Query 036757
Match_columns 385
No_of_seqs 160 out of 257
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1961 Vacuolar sorting prote 100.0 7.1E-85 1.5E-89 667.2 32.7 340 25-384 1-377 (683)
2 PF04129 Vps52: Vps52 / Sac2 f 100.0 6.8E-69 1.5E-73 559.4 31.2 281 86-384 1-313 (508)
3 KOG2148 Exocyst protein Sec3 [ 99.9 3E-23 6.5E-28 215.8 24.3 198 73-288 192-437 (867)
4 PF09763 Sec3_C: Exocyst compl 99.9 1.9E-22 4.1E-27 217.9 31.5 281 71-384 2-346 (701)
5 PF06419 COG6: Conserved oligo 98.1 0.00066 1.4E-08 73.6 22.8 181 77-289 23-232 (618)
6 PF10475 DUF2450: Protein of u 96.8 0.47 1E-05 46.8 22.6 168 70-269 38-208 (291)
7 PF04124 Dor1: Dor1-like famil 96.4 0.84 1.8E-05 45.9 21.6 104 71-181 18-121 (338)
8 KOG3758 Uncharacterized conser 96.4 0.51 1.1E-05 51.1 20.5 157 101-289 73-266 (655)
9 PF04136 Sec34: Sec34-like fam 96.2 0.36 7.8E-06 43.7 16.2 126 110-253 15-143 (157)
10 PF11867 DUF3387: Domain of un 93.6 9.1 0.0002 38.5 19.2 195 60-293 25-230 (335)
11 PF06148 COG2: COG (conserved 90.2 0.27 5.8E-06 42.9 3.1 81 70-160 33-113 (133)
12 PF04108 APG17: Autophagy prot 90.1 26 0.00056 36.5 19.2 86 88-174 112-222 (412)
13 PF15469 Sec5: Exocyst complex 89.9 11 0.00024 34.3 13.6 94 81-181 2-101 (182)
14 PF06148 COG2: COG (conserved 89.6 0.51 1.1E-05 41.1 4.4 16 42-57 24-39 (133)
15 PF07889 DUF1664: Protein of u 88.9 6.4 0.00014 34.7 10.7 78 72-151 41-120 (126)
16 cd00011 BAR_Arfaptin_like The 87.8 26 0.00056 33.4 18.3 156 100-279 20-193 (203)
17 KOG2307 Low density lipoprotei 84.6 15 0.00033 39.9 12.5 113 33-161 21-138 (705)
18 PF08700 Vps51: Vps51/Vps67; 84.1 6.1 0.00013 31.4 7.5 68 53-120 12-79 (87)
19 COG4942 Membrane-bound metallo 83.8 34 0.00073 36.0 14.5 71 97-167 57-127 (420)
20 PF06785 UPF0242: Uncharacteri 81.7 37 0.00079 34.8 13.3 124 49-172 61-193 (401)
21 PRK04778 septation ring format 81.4 85 0.0018 34.0 20.4 164 101-292 291-462 (569)
22 TIGR00606 rad50 rad50. This fa 80.4 1.4E+02 0.003 35.8 23.1 66 89-154 958-1025(1311)
23 PF04048 Sec8_exocyst: Sec8 ex 80.0 25 0.00054 31.1 10.5 81 71-151 44-124 (142)
24 PF06456 Arfaptin: Arfaptin-li 78.0 68 0.0015 30.9 18.1 161 93-278 44-224 (229)
25 KOG1937 Uncharacterized conser 76.9 1.1E+02 0.0024 32.7 18.6 31 264-294 474-504 (521)
26 PF08317 Spc7: Spc7 kinetochor 76.0 42 0.00091 33.7 12.1 42 101-142 211-252 (325)
27 PRK09546 zntB zinc transporter 72.7 34 0.00075 34.0 10.5 108 74-181 157-287 (324)
28 KOG0018 Structural maintenance 72.6 1.4E+02 0.003 35.0 16.0 80 197-279 925-1013(1141)
29 KOG2604 Subunit of cis-Golgi t 71.7 1.8E+02 0.0038 32.7 20.8 49 200-251 183-232 (733)
30 PF12731 Mating_N: Mating-type 71.4 41 0.00089 27.9 9.0 35 118-152 61-95 (95)
31 PF11932 DUF3450: Protein of u 68.9 78 0.0017 30.4 11.7 61 101-168 51-111 (251)
32 PF07200 Mod_r: Modifier of ru 68.8 64 0.0014 28.3 10.3 29 153-181 94-123 (150)
33 KOG2391 Vacuolar sorting prote 67.9 1.1E+02 0.0024 31.5 12.6 19 200-218 331-350 (365)
34 KOG2176 Exocyst complex, subun 66.5 1.6E+02 0.0034 33.5 14.5 95 60-168 35-135 (800)
35 PF05384 DegS: Sensor protein 66.5 95 0.0021 28.4 11.0 42 101-142 114-155 (159)
36 PF14712 Snapin_Pallidin: Snap 66.2 30 0.00064 28.0 7.0 52 101-152 37-89 (92)
37 PF09748 Med10: Transcription 66.1 50 0.0011 28.9 8.8 18 164-181 59-76 (128)
38 PRK04778 septation ring format 65.9 2E+02 0.0044 31.2 18.5 82 122-218 378-460 (569)
39 PF04156 IncA: IncA protein; 64.7 94 0.002 28.2 10.9 24 103-126 127-150 (191)
40 PRK11637 AmiB activator; Provi 63.7 1.9E+02 0.0041 30.0 15.6 79 102-181 71-149 (428)
41 PF06320 GCN5L1: GCN5-like pro 62.0 61 0.0013 28.2 8.5 71 73-144 46-116 (121)
42 PRK10884 SH3 domain-containing 60.9 1.5E+02 0.0033 28.1 12.0 81 65-147 84-166 (206)
43 smart00787 Spc7 Spc7 kinetocho 60.8 1.1E+02 0.0023 31.0 11.2 68 98-165 188-256 (312)
44 PRK10328 DNA binding protein, 59.9 67 0.0015 28.6 8.6 73 93-174 3-75 (134)
45 cd07660 BAR_Arfaptin The Bin/A 58.8 1.7E+02 0.0037 27.9 18.4 47 230-279 143-190 (201)
46 PF11083 Streptin-Immun: Lanti 58.8 56 0.0012 27.8 7.4 64 105-171 8-93 (99)
47 COG0598 CorA Mg2+ and Co2+ tra 58.2 1.3E+02 0.0028 30.0 11.4 69 103-181 217-285 (322)
48 PF06657 Cep57_MT_bd: Centroso 57.4 53 0.0011 26.5 6.8 62 116-177 13-76 (79)
49 TIGR00606 rad50 rad50. This fa 56.9 4.2E+02 0.009 31.8 18.2 69 100-168 823-898 (1311)
50 cd07627 BAR_Vps5p The Bin/Amph 56.5 1.8E+02 0.0038 27.4 12.2 70 72-142 9-80 (216)
51 COG1579 Zn-ribbon protein, pos 56.2 2E+02 0.0044 28.0 13.7 45 98-142 88-132 (239)
52 TIGR00634 recN DNA repair prot 55.9 2.9E+02 0.0064 29.8 15.4 17 203-219 326-342 (563)
53 KOG0933 Structural maintenance 55.1 2E+02 0.0043 33.8 12.9 73 92-167 237-310 (1174)
54 PF05667 DUF812: Protein of un 54.7 2.8E+02 0.0062 30.6 14.0 67 94-160 323-389 (594)
55 PRK10947 global DNA-binding tr 54.6 93 0.002 27.7 8.6 73 93-174 3-75 (135)
56 KOG0996 Structural maintenance 54.2 4.6E+02 0.0099 31.5 19.0 162 69-251 372-565 (1293)
57 PF05008 V-SNARE: Vesicle tran 54.0 1E+02 0.0022 23.9 9.5 44 76-122 5-48 (79)
58 cd09236 V_AnPalA_UmRIM20_like 53.4 2.6E+02 0.0056 28.4 16.8 99 78-177 127-235 (353)
59 TIGR00383 corA magnesium Mg(2+ 52.7 1.7E+02 0.0036 28.7 11.0 31 151-181 251-281 (318)
60 KOG0963 Transcription factor/C 52.6 65 0.0014 35.5 8.5 63 78-141 296-358 (629)
61 PF15278 Sec3_C_2: Sec3 exocys 51.5 97 0.0021 25.2 7.3 63 78-140 21-83 (86)
62 KOG0804 Cytoplasmic Zn-finger 51.2 2.3E+02 0.0049 30.4 11.9 78 71-148 332-410 (493)
63 PF13166 AAA_13: AAA domain 50.8 3E+02 0.0065 30.1 13.7 58 111-168 415-472 (712)
64 PF10158 LOH1CR12: Tumour supp 50.7 1.8E+02 0.0039 25.8 10.7 66 103-172 53-120 (131)
65 KOG0994 Extracellular matrix g 50.0 1.1E+02 0.0025 36.3 10.1 100 63-162 1187-1295(1758)
66 PF10392 COG5: Golgi transport 49.6 1.8E+02 0.0038 25.3 12.1 98 68-165 27-124 (132)
67 KOG4603 TBP-1 interacting prot 49.1 84 0.0018 29.4 7.5 70 80-158 78-147 (201)
68 PRK10869 recombination and rep 47.5 3.2E+02 0.007 29.6 13.0 167 47-250 208-377 (553)
69 PRK03918 chromosome segregatio 46.3 4.8E+02 0.01 29.4 21.6 8 324-331 788-795 (880)
70 smart00787 Spc7 Spc7 kinetocho 44.5 3.5E+02 0.0076 27.3 12.9 80 71-152 176-257 (312)
71 PF10805 DUF2730: Protein of u 43.9 1.6E+02 0.0035 24.8 8.1 54 98-151 34-89 (106)
72 PF12761 End3: Actin cytoskele 43.9 1E+02 0.0022 29.3 7.4 35 127-161 160-194 (195)
73 PRK03918 chromosome segregatio 43.1 5.3E+02 0.011 29.0 15.6 26 92-117 348-373 (880)
74 PF06156 DUF972: Protein of un 42.3 1.1E+02 0.0024 26.1 6.9 50 113-162 8-57 (107)
75 TIGR01005 eps_transp_fam exopo 42.3 2.7E+02 0.0058 31.0 11.7 23 92-114 309-331 (754)
76 PRK13169 DNA replication intia 42.1 1.1E+02 0.0024 26.4 6.8 48 113-160 8-55 (110)
77 PF07106 TBPIP: Tat binding pr 41.6 1.5E+02 0.0032 26.7 8.1 51 101-151 81-133 (169)
78 PF07106 TBPIP: Tat binding pr 41.6 1.5E+02 0.0033 26.6 8.1 60 97-156 107-167 (169)
79 PRK04863 mukB cell division pr 41.4 7.7E+02 0.017 30.4 20.0 67 77-143 317-385 (1486)
80 PF12777 MT: Microtubule-bindi 40.8 1.1E+02 0.0023 31.1 7.7 53 100-152 229-281 (344)
81 COG2433 Uncharacterized conser 40.6 5.6E+02 0.012 28.6 13.4 70 99-168 429-508 (652)
82 KOG3046 Transcription factor, 40.3 2.9E+02 0.0062 25.1 12.5 41 137-181 44-84 (147)
83 PF04102 SlyX: SlyX; InterPro 39.9 1.6E+02 0.0035 22.9 6.9 48 99-146 4-51 (69)
84 PF05377 FlaC_arch: Flagella a 39.5 1.2E+02 0.0026 23.1 5.8 31 111-141 5-35 (55)
85 TIGR02169 SMC_prok_A chromosom 39.4 6.5E+02 0.014 28.9 24.4 18 202-219 954-971 (1164)
86 PF04065 Not3: Not1 N-terminal 38.9 1.9E+02 0.0042 28.1 8.7 82 88-179 120-204 (233)
87 PF12252 SidE: Dot/Icm substra 38.4 7.7E+02 0.017 29.5 17.3 66 68-133 1152-1220(1439)
88 PF11902 DUF3422: Protein of u 38.3 1.9E+02 0.0041 30.5 9.2 92 73-169 268-366 (420)
89 PRK04863 mukB cell division pr 38.2 4.5E+02 0.0097 32.3 13.3 44 99-142 355-398 (1486)
90 KOG4674 Uncharacterized conser 38.1 6.5E+02 0.014 31.7 14.4 58 104-161 835-892 (1822)
91 PF10473 CENP-F_leu_zip: Leuci 37.4 3.1E+02 0.0067 24.6 12.8 86 62-151 12-97 (140)
92 PF02252 PA28_beta: Proteasome 37.2 3.2E+02 0.0069 24.7 12.8 61 231-292 72-140 (150)
93 PRK11085 magnesium/nickel/coba 36.6 4.6E+02 0.01 26.4 11.8 32 150-181 248-279 (316)
94 KOG0250 DNA repair protein RAD 36.4 8E+02 0.017 29.1 15.2 53 99-151 668-720 (1074)
95 KOG2069 Golgi transport comple 36.0 6.3E+02 0.014 27.9 17.9 103 72-181 43-145 (581)
96 PF15188 CCDC-167: Coiled-coil 35.7 1.9E+02 0.004 24.0 6.9 55 100-156 6-70 (85)
97 PF12777 MT: Microtubule-bindi 35.3 50 0.0011 33.4 4.3 106 90-218 205-310 (344)
98 PRK11020 hypothetical protein; 35.1 1.5E+02 0.0033 25.8 6.5 45 98-142 4-53 (118)
99 PF09325 Vps5: Vps5 C terminal 35.0 3.7E+02 0.008 24.8 18.4 69 72-141 29-99 (236)
100 PF07793 DUF1631: Protein of u 34.2 6.7E+02 0.014 27.8 13.2 64 152-220 488-551 (729)
101 PF10498 IFT57: Intra-flagella 34.0 5.5E+02 0.012 26.5 11.7 17 41-57 188-204 (359)
102 TIGR03007 pepcterm_ChnLen poly 33.1 4.6E+02 0.0099 27.4 11.2 21 93-113 269-289 (498)
103 PF04642 DUF601: Protein of un 33.1 1E+02 0.0022 30.5 5.8 78 43-120 185-273 (311)
104 TIGR03185 DNA_S_dndD DNA sulfu 32.7 7E+02 0.015 27.4 18.3 11 366-376 623-633 (650)
105 COG1579 Zn-ribbon protein, pos 32.0 5E+02 0.011 25.4 10.9 76 90-166 28-104 (239)
106 COG3883 Uncharacterized protei 31.9 5.2E+02 0.011 25.7 10.5 27 129-155 75-101 (265)
107 KOG4643 Uncharacterized coiled 31.8 9.4E+02 0.02 28.6 15.1 54 98-151 480-533 (1195)
108 PF06248 Zw10: Centromere/kine 31.6 7E+02 0.015 27.0 16.4 48 203-251 123-173 (593)
109 PF14662 CCDC155: Coiled-coil 31.5 4.6E+02 0.01 24.9 10.9 57 101-160 83-139 (193)
110 PF11593 Med3: Mediator comple 31.1 1.5E+02 0.0033 30.8 6.9 86 37-140 1-92 (379)
111 KOG3478 Prefoldin subunit 6, K 30.5 3.7E+02 0.008 23.5 10.1 103 115-245 4-107 (120)
112 PF06005 DUF904: Protein of un 30.4 2.8E+02 0.0061 22.0 9.9 65 100-167 5-69 (72)
113 PF04163 Tht1: Tht1-like nucle 30.4 7.6E+02 0.016 27.1 20.4 8 244-251 453-460 (544)
114 KOG2346 Uncharacterized conser 30.3 5.2E+02 0.011 28.3 10.8 121 23-161 11-133 (636)
115 KOG2211 Predicted Golgi transp 30.2 8.6E+02 0.019 27.6 14.5 142 103-272 90-236 (797)
116 PF01544 CorA: CorA-like Mg2+ 30.2 4.7E+02 0.01 24.6 10.9 110 72-181 123-257 (292)
117 PF04859 DUF641: Plant protein 30.0 2.2E+02 0.0048 25.3 6.9 49 101-149 82-130 (131)
118 KOG0977 Nuclear envelope prote 30.0 7.8E+02 0.017 27.1 17.4 78 203-292 201-282 (546)
119 PF05478 Prominin: Prominin; 29.9 8.7E+02 0.019 27.6 14.8 142 127-289 558-740 (806)
120 PF04912 Dynamitin: Dynamitin 29.8 4.6E+02 0.01 26.9 10.4 52 91-142 314-365 (388)
121 PRK10884 SH3 domain-containing 29.7 4.9E+02 0.011 24.7 9.8 52 101-152 95-150 (206)
122 PF15011 CK2S: Casein Kinase 2 29.3 4.3E+02 0.0093 24.2 9.0 75 63-137 18-95 (168)
123 PF10168 Nup88: Nuclear pore c 29.2 6.4E+02 0.014 28.5 11.9 48 99-146 596-658 (717)
124 PF10779 XhlA: Haemolysin XhlA 29.0 2.4E+02 0.0051 21.9 6.3 32 118-149 4-35 (71)
125 PF11559 ADIP: Afadin- and alp 29.0 4E+02 0.0086 23.4 9.8 37 119-155 79-115 (151)
126 PF10481 CENP-F_N: Cenp-F N-te 29.0 6.1E+02 0.013 25.6 13.2 71 90-163 86-188 (307)
127 PF02994 Transposase_22: L1 tr 28.8 3E+02 0.0065 28.3 8.7 67 100-166 145-219 (370)
128 PRK11637 AmiB activator; Provi 28.5 6.8E+02 0.015 25.9 18.9 52 101-152 63-114 (428)
129 PRK02224 chromosome segregatio 28.4 8.3E+02 0.018 27.6 12.9 118 47-167 202-319 (880)
130 cd00890 Prefoldin Prefoldin is 28.1 1.8E+02 0.0038 24.4 5.9 23 195-219 78-100 (129)
131 PF06103 DUF948: Bacterial pro 28.1 3.1E+02 0.0068 21.9 9.5 44 108-151 21-64 (90)
132 PF01865 PhoU_div: Protein of 28.0 4.7E+02 0.01 23.9 11.8 44 206-249 125-173 (214)
133 COG2825 HlpA Outer membrane pr 28.0 3.3E+02 0.0071 25.0 8.0 59 104-162 35-95 (170)
134 PF03999 MAP65_ASE1: Microtubu 27.9 30 0.00065 37.9 1.4 101 68-172 78-184 (619)
135 PF11932 DUF3450: Protein of u 27.9 5.4E+02 0.012 24.6 16.5 64 99-165 56-119 (251)
136 PF12325 TMF_TATA_bd: TATA ele 27.1 4.2E+02 0.0092 23.1 9.3 60 101-160 18-77 (120)
137 PF04111 APG6: Autophagy prote 27.0 6.1E+02 0.013 25.5 10.4 113 87-201 38-154 (314)
138 cd08915 V_Alix_like Protein-in 26.9 6.5E+02 0.014 25.1 18.8 48 131-178 187-234 (342)
139 PRK09841 cryptic autophosphory 26.9 4.7E+02 0.01 29.2 10.5 10 366-375 632-641 (726)
140 PF07462 MSP1_C: Merozoite sur 26.8 8.9E+02 0.019 26.7 12.3 67 102-168 462-542 (574)
141 PRK00736 hypothetical protein; 26.6 3.1E+02 0.0068 21.4 6.8 45 98-142 4-48 (68)
142 PF08537 NBP1: Fungal Nap bind 26.5 3.9E+02 0.0084 27.3 8.8 43 99-141 175-217 (323)
143 KOG4809 Rab6 GTPase-interactin 26.2 9.2E+02 0.02 26.7 13.9 89 89-180 331-426 (654)
144 cd07651 F-BAR_PombeCdc15_like 26.2 5.6E+02 0.012 24.2 13.5 56 90-145 61-118 (236)
145 PRK14160 heat shock protein Gr 25.6 6E+02 0.013 24.3 11.2 76 99-179 54-130 (211)
146 KOG2856 Adaptor protein PACSIN 25.4 8.2E+02 0.018 25.8 16.6 32 90-121 74-107 (472)
147 PF02403 Seryl_tRNA_N: Seryl-t 24.3 4E+02 0.0087 21.9 7.9 61 101-161 31-94 (108)
148 KOG2662 Magnesium transporters 24.3 6.4E+02 0.014 26.7 10.1 81 88-168 240-356 (414)
149 PF15290 Syntaphilin: Golgi-lo 24.3 7.5E+02 0.016 25.0 11.4 89 104-218 73-164 (305)
150 PF05278 PEARLI-4: Arabidopsis 23.8 7.4E+02 0.016 24.7 13.7 51 101-151 202-252 (269)
151 PF06810 Phage_GP20: Phage min 23.7 5.4E+02 0.012 23.2 12.3 78 99-181 27-109 (155)
152 PRK14011 prefoldin subunit alp 23.5 1.8E+02 0.004 26.1 5.3 27 115-141 5-31 (144)
153 TIGR02680 conserved hypothetic 23.5 8.3E+02 0.018 29.7 12.2 147 20-166 195-351 (1353)
154 PF05377 FlaC_arch: Flagella a 23.4 3.4E+02 0.0074 20.7 6.4 33 116-148 3-35 (55)
155 COG4026 Uncharacterized protei 23.3 7.2E+02 0.016 24.4 12.5 79 93-171 129-211 (290)
156 cd00632 Prefoldin_beta Prefold 23.3 3.3E+02 0.0072 22.5 6.6 9 78-86 34-42 (105)
157 PF04728 LPP: Lipoprotein leuc 23.1 3.5E+02 0.0076 20.7 7.1 34 122-155 19-52 (56)
158 cd09237 V_ScBro1_like Protein- 22.9 8E+02 0.017 24.8 17.3 79 99-177 145-241 (356)
159 PF07028 DUF1319: Protein of u 22.9 4.2E+02 0.0091 23.5 7.3 68 101-174 41-108 (126)
160 PF13094 CENP-Q: CENP-Q, a CEN 22.8 5.4E+02 0.012 22.8 12.6 45 98-142 40-84 (160)
161 KOG0976 Rho/Rac1-interacting s 22.8 1.3E+03 0.027 27.1 17.3 48 153-218 196-244 (1265)
162 PF04518 Effector_1: Effector 22.8 4.1E+02 0.0089 27.8 8.3 16 202-217 297-312 (379)
163 TIGR03185 DNA_S_dndD DNA sulfu 22.8 1E+03 0.023 26.1 17.9 6 329-334 591-596 (650)
164 PF10018 Med4: Vitamin-D-recep 22.7 4.2E+02 0.009 24.4 7.8 49 93-141 16-64 (188)
165 COG2433 Uncharacterized conser 22.5 1E+03 0.022 26.6 11.5 53 99-151 415-467 (652)
166 PF11348 DUF3150: Protein of u 22.5 2.6E+02 0.0056 27.4 6.6 84 167-268 30-130 (257)
167 PF09074 Mer2: Mer2; InterPro 21.8 3.7E+02 0.0079 25.5 7.1 45 99-143 142-186 (190)
168 PRK11546 zraP zinc resistance 21.3 3.2E+02 0.0069 24.7 6.4 47 99-145 61-107 (143)
169 PF09074 Mer2: Mer2; InterPro 21.2 7.1E+02 0.015 23.6 10.3 35 45-84 20-54 (190)
170 KOG0018 Structural maintenance 20.8 9.6E+02 0.021 28.6 11.3 65 101-165 685-749 (1141)
171 COG1196 Smc Chromosome segrega 20.7 1.5E+03 0.032 27.0 22.3 29 203-235 946-974 (1163)
172 KOG0946 ER-Golgi vesicle-tethe 20.5 1.4E+03 0.03 26.7 17.4 102 60-165 629-730 (970)
173 COG5185 HEC1 Protein involved 20.4 1.1E+03 0.025 25.6 18.7 113 100-217 352-473 (622)
174 PRK06569 F0F1 ATP synthase sub 20.3 6.7E+02 0.014 22.9 9.4 74 91-166 35-110 (155)
175 PRK05771 V-type ATP synthase s 20.2 4.3E+02 0.0093 29.0 8.5 48 123-171 89-136 (646)
176 KOG2273 Membrane coat complex 20.2 1E+03 0.022 25.1 19.9 90 72-166 279-371 (503)
177 PF07426 Dynactin_p22: Dynacti 20.1 6.9E+02 0.015 23.0 12.5 48 117-174 34-85 (174)
178 TIGR02169 SMC_prok_A chromosom 20.1 1.3E+03 0.029 26.4 20.4 9 324-332 1074-1082(1164)
179 PF06160 EzrA: Septation ring 20.1 1.1E+03 0.024 25.5 22.0 65 114-181 307-371 (560)
No 1
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=7.1e-85 Score=667.23 Aligned_cols=340 Identities=57% Similarity=0.885 Sum_probs=330.6
Q ss_pred ccCcccccCcccccccCCCCChhchHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHH
Q 036757 25 DLGAFVGDLTFEEDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSL 104 (385)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~d~~~~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L 104 (385)
.+|+++||++|++|..++++.++++..++++|.++++|+++|+.|.|||+|+++|+++|+.++.++||+|+++++++++|
T Consensus 1 ~~~~~~~~~~~e~~~~~~~~~le~~~~~~~~~~~~e~v~~~lktg~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~l 80 (683)
T KOG1961|consen 1 ELGARVGDLAFEEDSRSEDISLEEVLSQLQECLDDELVKEALKTGDDLREYSKQVENELRKAERKSIQDYIKESENLASL 80 (683)
T ss_pred CccccccccccchhcchhHHHHHHHHHHHHHhcchHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCC
Q 036757 105 HDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWN 184 (385)
Q Consensus 105 ~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~ 184 (385)
|+||.+|+.+|++||++|++||++|++||+||..||+||+.|+++|+||++++.+|++||++++|||+||++|.+|+
T Consensus 81 hNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~lI~~I~~g~--- 157 (683)
T KOG1961|consen 81 HNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPELIKTIVDGD--- 157 (683)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHHHHHHHHcCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhcCCcccccCH-HHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH------------
Q 036757 185 PFYPIILICGGAFIQVNE-EYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF------------ 251 (385)
Q Consensus 185 ~~~~~~~~~~~~~~~v~e-~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f------------ 251 (385)
||| +|++++++|++|++.++.+++.++++|++|+.|+|++||.||++|||+|
T Consensus 158 ---------------vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~fRkp~ 222 (683)
T KOG1961|consen 158 ---------------VNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAFRKPM 222 (683)
T ss_pred ---------------CCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 996 9999999999999999877889999999999999999999999999999
Q ss_pred -------------------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccCCCccccccc-cccc
Q 036757 252 -------------------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLD-IATSSDLIGVEAR-STGL 310 (385)
Q Consensus 252 -------------------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~~-~~~~~dlig~~~~-~~gl 310 (385)
||++|++++|.|||+|||+||+|+|.+||++|+++|+|||.. .+++.|++|++.+ ++|+
T Consensus 223 tn~qi~~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF~sY~~~L~klq~~~iat~~D~~Gi~fn~skGl 302 (683)
T KOG1961|consen 223 TNYQIPQQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYFKSYIRRLTKLQFEEIATKEDLMGIEFNASKGL 302 (683)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCccH
Confidence 999999999999999999999999999999999999999986 9999999998866 4588
Q ss_pred ---ccCCCCCCCCCCCccCcccHHHHHhhcCCCCcchhhhhhcCCCCChhHHHHhHHHHHHHhhhhHHHhHHhhhhc
Q 036757 311 ---FSRGREPLKNRSAVFALGDRINILKEIDQPALIPHIAEASSLKYPYEVLFRSLHKLLMDTATSEYLVALLFEFV 384 (385)
Q Consensus 311 ---fs~~~~~~~~~~~~FsLg~R~~iL~~ld~p~ivp~iae~~~~ky~~E~iFRSl~~~LiDnat~EYlF~~~FF~~ 384 (385)
||+...++++++++|++|+|++||+++|+|+|+||+|+++ +||+|++|||+|+||+||||+||+||.+||.|
T Consensus 303 ~~~fsk~~~~l~~r~tvF~ig~R~~Iltq~d~p~lvphiae~~--k~~~E~lfrs~~~al~dn~tsEYlFl~efF~~ 377 (683)
T KOG1961|consen 303 FFFFSKLPEPLKNRSTVFTIGKRLQILTQLDAPILVPHIAEAN--KYYIEALFRSLHLALLDNATSEYLFLEEFFAV 377 (683)
T ss_pred HHHhccCcchhhcccceeehhhhhhhhhhccccchhhhHHhcC--CCcHHHHHHHHHHHHHhcchhHHHHHHHHHhh
Confidence 8888888999999999999999999999999999999998 99999999999999999999999999999965
No 2
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=100.00 E-value=6.8e-69 Score=559.35 Aligned_cols=281 Identities=53% Similarity=0.820 Sum_probs=263.7
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhh
Q 036757 86 VELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 86 le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~ 165 (385)
+|.++|+||+++++++++||.+|++||++|++||++|.+||++|+.+|+||..||+||..|+++|+|||.++++|++||+
T Consensus 1 ~e~~si~dy~~e~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~ 80 (508)
T PF04129_consen 1 VERESIQDYLKESENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFID 80 (508)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHH
Q 036757 166 DIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAV 245 (385)
Q Consensus 166 ~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav 245 (385)
+++|||++|+.|++|+ ||+.|++++.++.+|+.....++..++++|++|+.|+|++||.||+
T Consensus 81 ~i~ipP~lI~~I~~~~------------------v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~ 142 (508)
T PF04129_consen 81 DIVIPPDLIRSICEGP------------------VNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAV 142 (508)
T ss_pred HHcCCHHHHHhHhcCC------------------CCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999977777666664334567889999999999999999999
Q ss_pred HHhHHH------------------------------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 036757 246 SKVYYF------------------------------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIA 295 (385)
Q Consensus 246 ~rir~f------------------------------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~~~~ 295 (385)
+|||+| ||++|+|++|.|||++|++||||||.++|++|+++|+||+.+.+
T Consensus 143 ~rir~fl~~kI~~lr~~~tn~q~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~~~~ 222 (508)
T PF04129_consen 143 ERIRDFLLKKIKSLRKPKTNSQIIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQLRII 222 (508)
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999 99999999999999999999999999999999999999999988
Q ss_pred cCC-CcccccccccccccCCCCCCCCCCCccCcccHHHHHh-hcCCCCcchhhhhhcCCCCChhHHHHhHHHHHHHhhhh
Q 036757 296 TSS-DLIGVEARSTGLFSRGREPLKNRSAVFALGDRINILK-EIDQPALIPHIAEASSLKYPYEVLFRSLHKLLMDTATS 373 (385)
Q Consensus 296 ~~~-dlig~~~~~~glfs~~~~~~~~~~~~FsLg~R~~iL~-~ld~p~ivp~iae~~~~ky~~E~iFRSl~~~LiDnat~ 373 (385)
++. ||+|+++++.|.|.+++.+.++++++|+||+|++||+ ++++|+|+||+|++++.+||+|++|||++++|+||||+
T Consensus 223 ~~~~dL~g~~~~~~~~~~s~~~~~~~~~~~Fslg~R~~iL~~~~~~p~i~~~~a~~~~~k~~~E~iFRS~~~~L~Dn~t~ 302 (508)
T PF04129_consen 223 DSKDDLIGVEDSSKGGFFSSKSSLKNRSSVFSLGRRIDILNSELDAPIIVPQIAEDNSQKYPIEEIFRSLNKALIDNATS 302 (508)
T ss_pred cccccccCCCccccccccCCCcccccchhhhhhhHHHHHHhhcccCCccccchhhcccccCCHHHHHHHHHHHHHHhhhH
Confidence 887 9999998776544445556678899999999999999 89999999999999999999999999999999999999
Q ss_pred HHHhHHhhhhc
Q 036757 374 EYLVALLFEFV 384 (385)
Q Consensus 374 EYlF~~~FF~~ 384 (385)
||+|+.+||..
T Consensus 303 Ey~F~~~FF~~ 313 (508)
T PF04129_consen 303 EYLFISEFFSG 313 (508)
T ss_pred HHHHHHHHHcc
Confidence 99999999975
No 3
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3e-23 Score=215.76 Aligned_cols=198 Identities=22% Similarity=0.397 Sum_probs=188.3
Q ss_pred HHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 73 REYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 73 r~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
..|++++..+|+.||++|||+.|.+++.+..|++.|+++.+++++||..|+.|...|++++.+|+.+.+++..+.++.+|
T Consensus 192 eaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~N 271 (867)
T KOG2148|consen 192 EAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVN 271 (867)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccC-H-HHHHHHHHHHHHHHhhC---CCCccchh
Q 036757 153 RKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVN-E-EYMRSLEILSKKLKFIG---VDPMVKTS 227 (385)
Q Consensus 153 Rk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~-e-~~i~~l~~L~~kl~~i~---~~~~~~~~ 227 (385)
.+++.++|..+|+++.||.++|.++.+|+ ++ + +.++++..+-+.+..+- -+|..-.+
T Consensus 272 n~kL~eEl~kvin~L~vp~shi~aL~egd------------------f~~a~~~ieact~aA~al~q~~~~~ldp~~l~m 333 (867)
T KOG2148|consen 272 NKKLIEELDKVINRLDVPSSHIAALTEGD------------------FDEADQGIEACTWAAKALRQLMNPNLDPIYLNM 333 (867)
T ss_pred hHHHHHHHHHHHHhccCcHHHHHhcccCC------------------ccccchhHHHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 99999999999999999999999999999 77 3 59999999988888643 25677789
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHH-------------------------------------------HHhhcCHHHHHHH
Q 036757 228 KALKDVQPELEKLRQKAVSKVYYF-------------------------------------------FLKGHGKEIYNEV 264 (385)
Q Consensus 228 ~A~~Dv~~~LekLr~kav~rir~f-------------------------------------------FL~~~~~~~a~El 264 (385)
+|++|.+.+|++|+.+++.|+.+| |||..++..|.-|
T Consensus 334 ~Avkdqr~eleklk~~FvrrlssfLnnlF~~l~d~~ssd~~~hs~eL~lPnhs~~~r~l~pya~Lm~wlK~~d~k~~~~l 413 (867)
T KOG2148|consen 334 RAVKDQRAELEKLKATFVRRLSSFLNNLFASLGDFLSSDKSYHSTELTLPNHSDLHRKLRPYARLMQWLKGLDKKCYGGL 413 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHhhhhccccCCchHHHHhhhhHHHHHHHHhcCCccchhHH
Confidence 999999999999999999999987 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 265 RAAYIDTMNKVLSAHFRAYIQALE 288 (385)
Q Consensus 265 ~~aYv~tmsk~Y~~~Fr~Y~~~L~ 288 (385)
+++|++..+++|.+.+|.|+..|.
T Consensus 414 ~k~Y~dslnlLy~Re~rnFfe~lk 437 (867)
T KOG2148|consen 414 RKAYCDSLNLLYRREARNFFEELK 437 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997764
No 4
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=99.92 E-value=1.9e-22 Score=217.88 Aligned_cols=281 Identities=22% Similarity=0.335 Sum_probs=225.9
Q ss_pred ChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 036757 71 TLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL 150 (385)
Q Consensus 71 dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL 150 (385)
|..++.+++.++|..+|.++|++++.+++.+..|...|+.+...++.||..|+.|...|++++++|..++.+++.++++.
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~ 81 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS 81 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccC-HHHH----HHHHHHHHHHHhhCC-----
Q 036757 151 KNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVN-EEYM----RSLEILSKKLKFIGV----- 220 (385)
Q Consensus 151 ~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~-e~~i----~~l~~L~~kl~~i~~----- 220 (385)
.|++.+.++|..+++.+.|||+..+.|.+++ ++ +..+ +++..|.+.|..++.
T Consensus 82 ~N~k~L~~eL~~Ll~~l~i~~~~l~~L~~~~------------------l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~ 143 (701)
T PF09763_consen 82 ANQKLLLNELENLLDTLSIPEEHLEALRNAS------------------LSSPDGLEKIEEAAEALYKALKAIRPDLEKL 143 (701)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC------------------CCCcccHHHHHHHHHHHHHHHHhcccccccC
Confidence 9999999999999999999999999999999 75 3333 458889999999653
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHHhHHH---------------------------------------------HHhh
Q 036757 221 DPMVKTSKALKDVQPELEKLRQKAVSKVYYF---------------------------------------------FLKG 255 (385)
Q Consensus 221 ~~~~~~~~A~~Dv~~~LekLr~kav~rir~f---------------------------------------------FL~~ 255 (385)
+|+...+.|++|.+..+++++.+|+.|+.+| |||+
T Consensus 144 ~~~~~~M~Av~er~~~~~~~~~~F~~r~~~~l~~~F~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~L~~ys~Li~~lK~ 223 (701)
T PF09763_consen 144 DPGLGQMRAVKERREEYEKVSDKFCKRLSRFLNNMFKNLVDELLSDKDSFSQSGKLSLPKHSSLHNELLPYSGLILWLKE 223 (701)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCChHHHHHHHHHHHhHHHHHHHHHH
Confidence 3567789999999999999999999999988 9999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC-CcccccccccccccCCC--------CCCCCCCCccC
Q 036757 256 HGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQLDIATSS-DLIGVEARSTGLFSRGR--------EPLKNRSAVFA 326 (385)
Q Consensus 256 ~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~~~~~~~-dlig~~~~~~glfs~~~--------~~~~~~~~~Fs 326 (385)
.+|..|..|+++|+.+|+++|.+.|+.++..+.+.-.+..... +. .+|+.+. ..-+.+....
T Consensus 224 ~d~~~y~~L~~~Y~~~~~~ly~~e~~~~~~~~k~~~~k~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sr~~~~- 294 (701)
T PF09763_consen 224 VDPESYQALIKAYNSSMSKLYEREIRDFFEALKKSISKASGDENDE--------SLFTSSSPELSTEWISLRKSRKLTL- 294 (701)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhhh--------hcccccccchhcccccccccccccC-
Confidence 9999999999999999999999999999999877654322211 10 1111110 0000001100
Q ss_pred cccHHHHHhhcCCCCcchhhhhhcCCCCChhHHHHhHHHHHHHhhhhHHHhHHhhhhc
Q 036757 327 LGDRINILKEIDQPALIPHIAEASSLKYPYEVLFRSLHKLLMDTATSEYLVALLFEFV 384 (385)
Q Consensus 327 Lg~R~~iL~~ld~p~ivp~iae~~~~ky~~E~iFRSl~~~LiDnat~EYlF~~~FF~~ 384 (385)
.|...+...+ .+......+.+-.+-..|..+.--+...|..|=.||.+||+.
T Consensus 295 --~~s~~~~~~~----~~~~~~~~~~~~~~~~a~~~~L~el~pl~~~EQ~Fi~~FFhl 346 (701)
T PF09763_consen 295 --DRSKTLRNID----MWAPSPKSSGKLRFDEAFEQALEELEPLCIREQNFIIDFFHL 346 (701)
T ss_pred --CCCccchhcc----cccCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111111111 000012234555678889999999999999999999999985
No 5
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.09 E-value=0.00066 Score=73.59 Aligned_cols=181 Identities=19% Similarity=0.387 Sum_probs=144.5
Q ss_pred HHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 036757 77 KGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVA 156 (385)
Q Consensus 77 ~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~ 156 (385)
..||+++-......+++|=.-..++..+...++.-....+.|.+.|..-..+=+.+-.++..|+++...+..|-+
T Consensus 23 ~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~----- 97 (618)
T PF06419_consen 23 SDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKK----- 97 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 456777777777777777777777888888888888888888888888888888888899999888877777766
Q ss_pred HHHHHHhhhhhcCChHHHHHhhcC--CCCCCCcchhhhcCCcccccCHHHHHHHHHH---HHHHHhhCCCCccchhhhhh
Q 036757 157 ESKLAKFVEDIIIPPRMVDIIVDG--ENWNPFYPIILICGGAFIQVNEEYMRSLEIL---SKKLKFIGVDPMVKTSKALK 231 (385)
Q Consensus 157 ~~~L~~~V~~i~Ipp~lI~~I~~g--~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L---~~kl~~i~~~~~~~~~~A~~ 231 (385)
.|..|.++..++|+=+.+|..| + ||++|...+... +..-+.+- .....+|-.
T Consensus 98 --ll~~f~~~f~Ls~~E~~~L~~~~~~------------------v~~~FF~~L~r~~~I~~~c~~LL---~~~~~~ag~ 154 (618)
T PF06419_consen 98 --LLDAFLERFTLSEEEEDALTSGEEP------------------VDDEFFDALDRVQKIHEDCKILL---STENQRAGL 154 (618)
T ss_pred --HHHHHHHhCCCCHHHHHHHhCCCCC------------------CCHHHHHHHHHHHHHHHHHHHHh---CCCCchHHH
Confidence 8999999999999999999999 7 999999886554 33333321 112456778
Q ss_pred hHHHHHHHHHHHHHHHhHHH------------------------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 232 DVQPELEKLRQKAVSKVYYF------------------------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQAL 287 (385)
Q Consensus 232 Dv~~~LekLr~kav~rir~f------------------------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L 287 (385)
++.....+...+|-+|++.| +|+ +.|.++.++.+.|+.+=++.. +++|+.+|
T Consensus 155 ~iM~~~~~~~e~a~erl~~w~q~e~~~l~~~~~~~~~~l~~al~~L~-~rp~lf~~~l~~~~~~R~~~l---~~~F~~aL 230 (618)
T PF06419_consen 155 EIMEQMSKYLERAYERLYRWVQRECRSLNLDNPEVSPLLRRALRYLR-ERPVLFNYCLDEFAEARSKAL---LRRFLDAL 230 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcccchHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 88888999999999999998 564 569999999999999998876 45567777
Q ss_pred HH
Q 036757 288 EK 289 (385)
Q Consensus 288 ~K 289 (385)
..
T Consensus 231 t~ 232 (618)
T PF06419_consen 231 TR 232 (618)
T ss_pred cC
Confidence 54
No 6
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=96.83 E-value=0.47 Score=46.79 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=112.4
Q ss_pred CChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 036757 70 TTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLK 149 (385)
Q Consensus 70 ~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~k 149 (385)
..|..|...|+..|...=.+.=.+|.+.-.++.+|+.++..|...+..+-..|..=++.+..-+=+|-.++. +
T Consensus 38 ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~r-------k 110 (291)
T PF10475_consen 38 EKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQR-------K 110 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------H
Confidence 445566666677776666666677888888888999999999888888888887777777665555555544 4
Q ss_pred hhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCccchhhh
Q 036757 150 LKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKA 229 (385)
Q Consensus 150 L~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A 229 (385)
-+|-+.+...|..+-.-...-+.+-..+.+|+ |..++.-+..-.+.+. ..++..+
T Consensus 111 r~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d----------------------y~~Al~li~~~~~~l~---~l~~~~c 165 (291)
T PF10475_consen 111 RQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD----------------------YPGALDLIEECQQLLE---ELKGYSC 165 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHHHH---hcccchH
Confidence 45555666666665444444455555555555 7777776666555553 2345567
Q ss_pred hhhHHHHHHHHHHHHHHHhHHH---HHhhcCHHHHHHHHHHHH
Q 036757 230 LKDVQPELEKLRQKAVSKVYYF---FLKGHGKEIYNEVRAAYI 269 (385)
Q Consensus 230 ~~Dv~~~LekLr~kav~rir~f---FL~~~~~~~a~El~~aYv 269 (385)
++++...|+.+.....+++-.- -...-+|..|..|..||.
T Consensus 166 ~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~ 208 (291)
T PF10475_consen 166 VRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQ 208 (291)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777777766666666543 233567888888988884
No 7
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=96.41 E-value=0.84 Score=45.93 Aligned_cols=104 Identities=13% Similarity=0.237 Sum_probs=73.7
Q ss_pred ChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 036757 71 TLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL 150 (385)
Q Consensus 71 dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL 150 (385)
.|.+-...+..+++.+...+-..|++..+....+...+..+...++.+.+-|..++......+..-.. +....
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~-------~~~~r 90 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQK-------ISEER 90 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 34555778889999999999999999888888777777776666666666555555554444444433 33334
Q ss_pred hhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 151 KNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 151 ~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
+....+......+++-+.+|.=|=..|.+|.
T Consensus 91 ~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~ 121 (338)
T PF04124_consen 91 KKASLLLENHDRLLDILELPQLMDTCIRNGN 121 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence 4445566677788888889988888888887
No 8
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.51 Score=51.08 Aligned_cols=157 Identities=13% Similarity=0.345 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSI-------SSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRM 173 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~I-------S~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~l 173 (385)
+..+..+++.-...+..|-.--.++.+++.+. =.....++++...+..|.+ -+..|.++..++.+=
T Consensus 73 f~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~k-------ii~~Fl~~fqLs~~E 145 (655)
T KOG3758|consen 73 FKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKK-------IINAFLDNFQLSSEE 145 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcccChHH
Confidence 44445555555555555555555555555543 4567788888888888887 788999999999999
Q ss_pred HHHhhc-CCCCCCCcchhhhcCCcccccCHHHHHHH---HHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhH
Q 036757 174 VDIIVD-GENWNPFYPIILICGGAFIQVNEEYMRSL---EILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVY 249 (385)
Q Consensus 174 I~~I~~-g~~~~~~~~~~~~~~~~~~~v~e~~i~~l---~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir 249 (385)
.+.|.+ |+ ||+.|.+.| ++++.--+.+-..+. -.|.-++.....+...+|-+|+.
T Consensus 146 ~~~L~~~g~------------------i~e~FF~vL~rvqeIh~~~~~Ll~~~~---~~Ag~eime~M~~~~E~a~erl~ 204 (655)
T KOG3758|consen 146 LDLLTESGP------------------IDEDFFKVLDRVQEIHDNCRLLLQTPN---QTAGLEIMEKMALIQEGAYERLF 204 (655)
T ss_pred HHHHhcCCc------------------chHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 88 999888774 445444444211122 34666777777888888889988
Q ss_pred HH--------------------------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 250 YF--------------------------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEK 289 (385)
Q Consensus 250 ~f--------------------------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~K 289 (385)
+| ||. ..|.+++.+.+.|+..-++.. ++.|+.+|.+
T Consensus 205 r~~qs~e~~~l~~t~~~E~~~il~kA~~~L~-~~p~lfk~~ide~~~aR~~~L---~~~Fisaltr 266 (655)
T KOG3758|consen 205 RWSQSSECRNLTGTDSQEVSPILRKAFVFLS-SRPVLFKYLIDEVGTARSQSL---LRQFISALTR 266 (655)
T ss_pred HHhhhHhhcCCccccchhhHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHH---HHHHHHHHcc
Confidence 87 555 679999999999998888765 6778888854
No 9
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=96.24 E-value=0.36 Score=43.74 Aligned_cols=126 Identities=13% Similarity=0.212 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCC
Q 036757 110 DCDAILSQMETL---LSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPF 186 (385)
Q Consensus 110 ~cd~~L~~mE~~---L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~ 186 (385)
.|+.+|..+++. |+.-+..-..|++.=..+++.+..|-..=+.-..+-+.|..-+.-..-=+.+.+.+..+.
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~----- 89 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPG----- 89 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCC-----
Confidence 344444433333 455556667788888888888777776666556666666666666665556666665543
Q ss_pred cchhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 036757 187 YPIILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFFL 253 (385)
Q Consensus 187 ~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~fFL 253 (385)
| ...++.|..-|..|+..|.|+...|.++++.+ -...+..+..+|+.=||.||.
T Consensus 90 -~---------sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~~---Y~~rf~q~ltRAl~lIk~y~~ 143 (157)
T PF04136_consen 90 -S---------SVNSDSFKPMLSRLDECLEFLEEHPNFKEAEV---YLIRFRQCLTRALTLIKNYVV 143 (157)
T ss_pred -C---------cccchHHHHHHHHHHHHHHHHHHhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 1 10348999999999999999988787766543 234677888899999987743
No 10
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=93.56 E-value=9.1 Score=38.53 Aligned_cols=195 Identities=14% Similarity=0.254 Sum_probs=114.7
Q ss_pred HHHHHHhhcCCChHHHHHHHH-hhhHHhhhhhHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 036757 60 DVVANILSKGTTLREYTKGVE-NNLRQVELDSIQDYIK-----ESDNLVSLHDQIRDCDAILSQMETLLSGFQAEI---G 130 (385)
Q Consensus 60 ~~v~~~L~~g~dLr~ys~~ve-~eL~~le~~~Iq~yi~-----~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L---~ 130 (385)
+++++.+ +|.|+..|-..-. +.+..+ .+.+...+. ....|......+..+=.++.+-.. ...|..++ .
T Consensus 25 ~~~~~~~-~~~d~~~~~~~~~~~~l~~l-~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~~p~~~-a~~~~~d~~~f~ 101 (335)
T PF11867_consen 25 EILRDFF-HGFDYSKFFEASPFERLELL-DDAVDHILSLEDEERRKRFLKLVKELSKAYALCLPDPE-AEEYRDDIAFFQ 101 (335)
T ss_pred HHHHHHh-cCCChHHhcCCChHHHHHHH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHH
Confidence 7777777 9999988844322 222222 223333333 134455555566655554444333 45677777 4
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHH
Q 036757 131 SISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEI 210 (385)
Q Consensus 131 ~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~ 210 (385)
.|+.-|..+-..... .+...+..++.++|++-+.+..+++.+-.+.+..| |+++ ++++|++.+..
T Consensus 102 ~ir~~i~k~~~~~~~-----~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~--disi--------ld~eFl~~v~~ 166 (335)
T PF11867_consen 102 AIRAAIRKLYSDDDG-----PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKP--DISI--------LDDEFLEEVKK 166 (335)
T ss_pred HHHHHHHHhccCCCC-----CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCC--Chhh--------cCHHHHHHHHh
Confidence 455665555433221 46778899999999999999998776655432222 5555 78888766544
Q ss_pred HHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 036757 211 LSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHF--RAYIQALE 288 (385)
Q Consensus 211 L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~~F--r~Y~~~L~ 288 (385)
.. .+ . -.++.|+...-.+|+ =....+|.-|..+..-+-++|.+|-.... ..|+..|.
T Consensus 167 ~~--------~k---~--------~~~e~L~~~l~~~I~--~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi 225 (335)
T PF11867_consen 167 MK--------SK---N--------LKAELLEKLLRDEIK--VRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEELI 225 (335)
T ss_pred cc--------Cc---h--------HHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 41 11 1 122233333333333 22448888888999999999998876643 36667776
Q ss_pred Hhhhh
Q 036757 289 KLQLD 293 (385)
Q Consensus 289 KL~~~ 293 (385)
+|..+
T Consensus 226 ~la~e 230 (335)
T PF11867_consen 226 KLAKE 230 (335)
T ss_pred HHHHH
Confidence 66543
No 11
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=90.17 E-value=0.27 Score=42.88 Aligned_cols=81 Identities=27% Similarity=0.430 Sum_probs=27.1
Q ss_pred CChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 036757 70 TTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLK 149 (385)
Q Consensus 70 ~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~k 149 (385)
.||+.|.+.+.++|-.+=..+.++|++=+.+ +...+..+..|..-|..|+.++..+.++|...++ .++..
T Consensus 33 ~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~-------L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~---~i~~~ 102 (133)
T PF06148_consen 33 KDLRSYSKELKNELIELINDDYADFVSLSTN-------LVGMDEKIEELRKPLSQFREEVESVRDELDNTQE---EIEDK 102 (133)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHS-STTHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 4788888888888887777777766665554 4455556666777777777777777666655555 47777
Q ss_pred hhhHHHHHHHH
Q 036757 150 LKNRKVAESKL 160 (385)
Q Consensus 150 L~NRk~~~~~L 160 (385)
++.|+.+...-
T Consensus 103 l~~~~~l~~~k 113 (133)
T PF06148_consen 103 LEERKELREEK 113 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 12
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=90.14 E-value=26 Score=36.48 Aligned_cols=86 Identities=21% Similarity=0.304 Sum_probs=59.3
Q ss_pred hhhHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHH-------------------
Q 036757 88 LDSIQDYIKESDNLVSL----HDQIRDCDAILSQMETLLSGFQAEIGSISSDI--KILQEK------------------- 142 (385)
Q Consensus 88 ~~~Iq~yi~~~~~l~~L----~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI--~~LQe~------------------- 142 (385)
.-+..||+.+ +.+..| ...|++|..+-..++..+..|..+|..+++.+ ..+.+-
T Consensus 112 ~ktL~DFVd~-~~v~~L~~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s 190 (412)
T PF04108_consen 112 PKTLYDFVDE-DSVEILRENLKISIDELQAIQEQLDNSLLQFDNDLRKLKKQLINKRLKDYELLAPFQSSLGSSPSSSSS 190 (412)
T ss_pred CCcHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCcccc
Confidence 3456778876 678888 44556667777888999999999999999999 444332
Q ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhcCChHHH
Q 036757 143 SMDMGLKLKNRKVAESKLAKFVEDIIIPPRMV 174 (385)
Q Consensus 143 S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI 174 (385)
+..++.-++-...++..|..+++.++===|++
T Consensus 191 ~~~~~~i~~~l~~le~ema~lL~sLt~HfDqC 222 (412)
T PF04108_consen 191 NPLMSTILKELHSLEQEMASLLESLTNHFDQC 222 (412)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456666667777777777777665333333
No 13
>PF15469 Sec5: Exocyst complex component Sec5
Probab=89.86 E-value=11 Score=34.28 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=59.2
Q ss_pred hhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH
Q 036757 81 NNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAI------LSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK 154 (385)
Q Consensus 81 ~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~------L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk 154 (385)
.+|+.+=.++...|++-.+.+..+|.++...... ++.+++.|..=..--..+...|-. -..+..+-+
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~-------~~~k~~~l~ 74 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLE-------RREKADKLR 74 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHH
Confidence 3566667788899999999999999999765443 444444444322222222222222 222344445
Q ss_pred HHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 155 VAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 155 ~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
.+..-|..+=-=+.+|-.+.+.|..|+
T Consensus 75 ~~l~~l~r~~flF~LP~~L~~~i~~~d 101 (182)
T PF15469_consen 75 NALEFLQRNRFLFNLPSNLRECIKKGD 101 (182)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCc
Confidence 555555555555679999999999999
No 14
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=89.65 E-value=0.51 Score=41.13 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=0.0
Q ss_pred CCCChhchHHHHHhhh
Q 036757 42 DDISLEGLEQELEECK 57 (385)
Q Consensus 42 ~d~~~~~l~~~l~~~~ 57 (385)
.-.++++|-.+|..|.
T Consensus 24 ~~~~Le~L~~dL~~~~ 39 (133)
T PF06148_consen 24 RYVSLEDLRKDLRSYS 39 (133)
T ss_dssp ----------------
T ss_pred CCCCHHHHHHHHHHHH
Confidence 3456666666777665
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.95 E-value=6.4 Score=34.72 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=57.5
Q ss_pred hHHHHHHHHhhhHHhhh--hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 036757 72 LREYTKGVENNLRQVEL--DSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLK 149 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~--~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~k 149 (385)
|.+....|.++|.++.. ..-...+. .++..|-..+++|..+-..+.+-...-+.|+..|..++..+|..=..|..|
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLs--qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~k 118 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLS--QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGK 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554432 12223333 568889999999999999999999999999999999999999977777766
Q ss_pred hh
Q 036757 150 LK 151 (385)
Q Consensus 150 L~ 151 (385)
+.
T Consensus 119 i~ 120 (126)
T PF07889_consen 119 ID 120 (126)
T ss_pred HH
Confidence 64
No 16
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=87.75 E-value=26 Score=33.36 Aligned_cols=156 Identities=17% Similarity=0.185 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc------CCh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDI--KILQEKSMDMGLKLKNRKVAESKLAKFVEDII------IPP 171 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI--~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~------Ipp 171 (385)
.+..+-......-..+.+-+..|..|=.+||.-+.+. +.+.-=+..+..--+||..+...|.+|+.++. ||.
T Consensus 20 ~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~g~~ll~~l~~~~~~l~T~~~kai~D 99 (203)
T cd00011 20 SVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKNGETLLGAVNFFVSSINTLVTKAIED 99 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 3555555555566667777777777777777665444 12333333444555899999999999999874 333
Q ss_pred HHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhC--CCCcc-------chh-hhhhhHHHHHHHHH
Q 036757 172 RMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIG--VDPMV-------KTS-KALKDVQPELEKLR 241 (385)
Q Consensus 172 ~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~--~~~~~-------~~~-~A~~Dv~~~LekLr 241 (385)
... +|-.=.. .--+|...+-++ +... .+|.+ +.+ .-+++-+..++|||
T Consensus 100 T~l-TI~~ye~-----------------aR~EY~a~~l~~----ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr 157 (203)
T cd00011 100 TLL-TVKQYEA-----------------ARLEYDAYRLDL----KELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLR 157 (203)
T ss_pred HHH-HHHHHHH-----------------HHHhHHHHHHHH----HHhcccCCcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1111110 111233332222 2221 11211 111 12455566899999
Q ss_pred HHHHHHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Q 036757 242 QKAVSKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSAH 279 (385)
Q Consensus 242 ~kav~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~~ 279 (385)
.-++.|+. ||-++.-.+..---..|.++|..||..-
T Consensus 158 ~Dv~~Kl~--lL~~~r~~~l~~qL~~~~~al~~y~~~~ 193 (203)
T cd00011 158 GDVAIKLK--FLEENKIKVMHKQLLLFHNTVSAYFAGN 193 (203)
T ss_pred HHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999 9999888888888889999999998754
No 17
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.64 E-value=15 Score=39.89 Aligned_cols=113 Identities=24% Similarity=0.349 Sum_probs=71.5
Q ss_pred Cccccc-ccCCCCChhchHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHH
Q 036757 33 LTFEED-ASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDC 111 (385)
Q Consensus 33 ~~~~~~-~~~~d~~~~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~c 111 (385)
|-|+-+ ...+|||.|..=.+...+.+=+.++. |||-|-+.+.+.+-.|=.+---||+.=+.+++.|
T Consensus 21 LcFdk~eFmkedFdve~f~s~~R~~v~letLrd------dLrlylksl~~aMieLIN~DYADFVnLStnLVgl------- 87 (705)
T KOG2307|consen 21 LCFDKTEFMKEDFDVERFMSLARQKVDLETLRD------DLRLYLKSLQNAMIELINDDYADFVNLSTNLVGL------- 87 (705)
T ss_pred cccChhhhccccCCHHHHHHHHhccCCHHHHHH------HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccH-------
Confidence 345555 56778887775444444444455554 7888988888888777666666666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 112 DAILSQMETLLSGFQAEIGS----ISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 112 d~~L~~mE~~L~~Fq~~L~~----IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
|..|.+|+.=|..+..++.+ |+.-+..+++ .++.+..||+..+..+.
T Consensus 88 d~aln~i~qpL~qlreei~s~rgsV~ea~~alr~---q~se~~~~Re~k~~lld 138 (705)
T KOG2307|consen 88 DDALNKIEQPLNQLREEIKSTRGSVGEAERALRQ---QCSELCSNREKKIELLD 138 (705)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45555566666556555544 4555566664 47777778777665544
No 18
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=84.07 E-value=6.1 Score=31.39 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=41.0
Q ss_pred HHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 036757 53 LEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMET 120 (385)
Q Consensus 53 l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~ 120 (385)
..++..+-.++++...-..|+.-.+....+|+.+=..+-.+||..++.+..+...+..-...|..+..
T Consensus 12 ~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 12 FKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455555555666777777778888777777777777777666665555444444433333
No 19
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.77 E-value=34 Score=36.02 Aligned_cols=71 Identities=10% Similarity=0.190 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 97 ESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 97 ~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
..+....|..+|.+....+++++.-|..+..+|..++..|..+..+-..+..+-.+|+....++-..+...
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~ 127 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778899999999999999999999999999999999999999998888888866666665555555554
No 20
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.66 E-value=37 Score=34.82 Aligned_cols=124 Identities=11% Similarity=0.207 Sum_probs=81.6
Q ss_pred hHHHHHhhhCh---HHHHHHhhcCCChHHHHHHHHhhhHH---hhh---hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 036757 49 LEQELEECKNH---DVVANILSKGTTLREYTKGVENNLRQ---VEL---DSIQDYIKESDNLVSLHDQIRDCDAILSQME 119 (385)
Q Consensus 49 l~~~l~~~~~~---~~v~~~L~~g~dLr~ys~~ve~eL~~---le~---~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE 119 (385)
=|..|..-+.+ .-|+++.++...||...+.|++.-.. +.. .-........+-+...-..++.-...+...+
T Consensus 61 re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~ 140 (401)
T PF06785_consen 61 REKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLR 140 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34556555544 56788888999999998887753221 111 1111222222223333333444444444555
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChH
Q 036757 120 TLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPR 172 (385)
Q Consensus 120 ~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~ 172 (385)
+.=..++-.|..++.++....++|..++..|..-.+....|+..-..-.+||.
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~ 193 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQH 193 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 55567889999999999999999999999999999999999887777666664
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.39 E-value=85 Score=34.01 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISS-------DIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRM 173 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~-------eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~l 173 (385)
+..|+..|..-...-..++.-.......|..+.. +|..|++.-.--...+.+.+.+.+.|..+-..+. .+
T Consensus 291 Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~---~~ 367 (569)
T PRK04778 291 IDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD---EI 367 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH---HH
Confidence 4555555544433334444444444444444444 4444444333223346667888888888777776 24
Q ss_pred HHHhhcCCCCCCCcchhhhcCCcccccC-HHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHHH
Q 036757 174 VDIIVDGENWNPFYPIILICGGAFIQVN-EEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYFF 252 (385)
Q Consensus 174 I~~I~~g~~~~~~~~~~~~~~~~~~~v~-e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~fF 252 (385)
...+.... +. ..-.+.+..+.+++..+... -...++....|.+--..|..++..|
T Consensus 368 ~~~i~~~~------------------~~ysel~e~leel~e~leeie~e-----q~ei~e~l~~Lrk~E~eAr~kL~~~- 423 (569)
T PRK04778 368 TERIAEQE------------------IAYSELQEELEEILKQLEEIEKE-----QEKLSEMLQGLRKDELEAREKLERY- 423 (569)
T ss_pred HHHHHcCC------------------CCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44555555 33 33444455566666555321 1111111122222223333333322
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036757 253 LKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL 292 (385)
Q Consensus 253 L~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~ 292 (385)
+..-..+-..+++..+--+...|..+|..--..+.+|..
T Consensus 424 -~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 424 -RNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred -HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 111112333333444444455566666655555555553
No 22
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.40 E-value=1.4e+02 Score=35.80 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=53.2
Q ss_pred hhHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH
Q 036757 89 DSIQDYIKE--SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK 154 (385)
Q Consensus 89 ~~Iq~yi~~--~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk 154 (385)
..|++|+.. ..++..+...+......++.++.-+......+..++.+|..++.+-..+...+..|+
T Consensus 958 ~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~ 1025 (1311)
T TIGR00606 958 KDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK 1025 (1311)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777776 345777888888887888888888888888888889999999888888888888883
No 23
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=80.03 E-value=25 Score=31.13 Aligned_cols=81 Identities=15% Similarity=0.255 Sum_probs=68.6
Q ss_pred ChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 036757 71 TLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL 150 (385)
Q Consensus 71 dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL 150 (385)
.+++..+.++..|..+=.++-++|=+.=..+..+...|.+|..-+..+-..|..-...|+.-+.+++.|-.+|.....-+
T Consensus 44 ~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi 123 (142)
T PF04048_consen 44 EFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMI 123 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34455667778888777888888888888899999999999999999999999999999999999999999887755555
Q ss_pred h
Q 036757 151 K 151 (385)
Q Consensus 151 ~ 151 (385)
+
T Consensus 124 ~ 124 (142)
T PF04048_consen 124 E 124 (142)
T ss_pred H
Confidence 4
No 24
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=77.95 E-value=68 Score=30.89 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=105.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhh
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGS------ISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVED 166 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~------IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~ 166 (385)
+.-.....+..+...+...-..+...+..|..|=.+++. ++.++...-+ ....--+|+..+...|.+|+++
T Consensus 44 ~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~---~~~~~~~~~~~L~~~l~~~~~~ 120 (229)
T PF06456_consen 44 DTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGE---AQRSLAKQGETLLKALKRFLSD 120 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333445668888888888888899999999999999999 6777766655 4555668899999999999998
Q ss_pred hc------CChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCc-------cc-hhhhhhh
Q 036757 167 II------IPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPM-------VK-TSKALKD 232 (385)
Q Consensus 167 i~------Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~-------~~-~~~A~~D 232 (385)
+. ||..+ .+|-.=+. .=-+|-..+.++..--.-. +|. +. ...-+++
T Consensus 121 l~Tf~~kaI~DT~-~Tik~ye~-----------------aR~EY~ay~~~lke~~~e~--~~~~~~~~~~~r~~q~~~~~ 180 (229)
T PF06456_consen 121 LNTFRNKAIPDTL-LTIKKYED-----------------ARFEYDAYRLWLKEMSDEL--DPDTAKQEPKFRVAQGNYQE 180 (229)
T ss_dssp HHHHHHTHHHHHH-HHHHHHHH-----------------HHHHHHHHHHHHHHHH--T--STSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHH-----------------HHHHHHHHHHHHHHhhccc--CchhhcccchHHHHHHHHHH
Confidence 74 22211 12211110 1113333333332221111 121 11 0112345
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 036757 233 VQPELEKLRQKAVSKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSA 278 (385)
Q Consensus 233 v~~~LekLr~kav~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~ 278 (385)
-+..+++||.-.+.|+. +|-++.-.+...--..|..+|+.||..
T Consensus 181 ~k~rf~kLr~Dv~~Kl~--LL~~~rv~~~~~qL~~~~~al~~y~~~ 224 (229)
T PF06456_consen 181 AKERFDKLRSDVLVKLD--LLDENRVNVMSHQLVLFQNALAAYFSG 224 (229)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999999 999888777777788899999988864
No 25
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.91 E-value=1.1e+02 Score=32.70 Aligned_cols=31 Identities=23% Similarity=0.412 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 036757 264 VRAAYIDTMNKVLSAHFRAYIQALEKLQLDI 294 (385)
Q Consensus 264 l~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~~~ 294 (385)
++++-.+-=+++|....+.|..+|+|++.+.
T Consensus 474 ~~revrdlE~qI~~E~~k~~l~slEkl~~Dy 504 (521)
T KOG1937|consen 474 LKREVRDLESQIYVEEQKQYLKSLEKLHQDY 504 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 3444455567899999999999999999754
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.04 E-value=42 Score=33.70 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
+..+...|.+....++.+...|..-+..|..+...|+.+.++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444443
No 27
>PRK09546 zntB zinc transporter; Reviewed
Probab=72.71 E-value=34 Score=33.97 Aligned_cols=108 Identities=8% Similarity=0.171 Sum_probs=53.6
Q ss_pred HHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHhHHH
Q 036757 74 EYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQ-------------------AEIGSISS 134 (385)
Q Consensus 74 ~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq-------------------~~L~~IS~ 134 (385)
.+.+.+++++..+|......--...+++..|...+-.-...+.++...|..+. ..+..+.+
T Consensus 157 ~~l~~i~~~ld~lE~~l~~~~~~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~~ 236 (324)
T PRK09546 157 EFIEELHDKIIDLEDNLLDQQIPPRGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQDIADRLGRGLD 236 (324)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHH
Confidence 44556666666665433321000112455555555444444444444443332 22222334
Q ss_pred HHHHHHHHhhhh----hhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 135 DIKILQEKSMDM----GLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 135 eI~~LQe~S~~m----~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
++..+.++...+ ...+.||..-..++-+++.-|.+||.+|..|--=|
T Consensus 237 ~l~~~~~~~~~l~d~~~s~~s~~~N~~m~~Ltilt~IflPlT~IaGiyGMN 287 (324)
T PRK09546 237 DLDACIARTAVLADEIASVMAEAMNRRTYTMSLMAMVFLPTTFLTGLFGVN 287 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 554444433333 23344444333445667778889999999986655
No 28
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=72.62 E-value=1.4e+02 Score=35.04 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=44.3
Q ss_pred ccccCHHHH--HHHHHHHHHHHhhCCCCccch---hhh--hhhHHHHHHHHHHHHHHHhHH-H-HHhhcCHHHHHHHHHH
Q 036757 197 FIQVNEEYM--RSLEILSKKLKFIGVDPMVKT---SKA--LKDVQPELEKLRQKAVSKVYY-F-FLKGHGKEIYNEVRAA 267 (385)
Q Consensus 197 ~~~v~e~~i--~~l~~L~~kl~~i~~~~~~~~---~~A--~~Dv~~~LekLr~kav~rir~-f-FL~~~~~~~a~El~~a 267 (385)
|.++..+|. +.|++.+..|+.+ .|..+. ..+ .+++..+++..|.+|- ++++ | =.|.--.+.+.+...-
T Consensus 925 y~~L~~~y~L~~kl~e~~~~l~~~--~Pn~kA~~~~d~v~~~~~~~EfE~ark~ak-~ak~~F~~VK~~R~~~F~~~F~~ 1001 (1141)
T KOG0018|consen 925 YSGLPREYKLQQKLEEKQSVLNRI--APNLKALERLDEVRFQEINEEFEAARKEAK-KAKNAFNKVKKKRYERFMACFEH 1001 (1141)
T ss_pred cccccHHHHHHHHHHHHHHHHHHh--CcchHHHhhhhhHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344665665 3355555555555 243221 111 3455568888887664 4444 3 2344445666677766
Q ss_pred HHHHHHHHHHHH
Q 036757 268 YIDTMNKVLSAH 279 (385)
Q Consensus 268 Yv~tmsk~Y~~~ 279 (385)
-.+++..+|...
T Consensus 1002 va~~Id~IYK~L 1013 (1141)
T KOG0018|consen 1002 VADNIDRIYKEL 1013 (1141)
T ss_pred HHHHHHHHHHHh
Confidence 677788888544
No 29
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.72 E-value=1.8e+02 Score=32.71 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=39.1
Q ss_pred cC-HHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH
Q 036757 200 VN-EEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF 251 (385)
Q Consensus 200 v~-e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f 251 (385)
|+ ..|.+.|..|+..|.++..+|..++..|. .-...++-.||+.=|+.|
T Consensus 183 v~~~sF~~~l~~ld~ci~~l~en~~fkd~~~Y---~~k~kqcL~kA~~lik~y 232 (733)
T KOG2604|consen 183 VGKVSFKEMLAKLDECIMFLEENPDFKDAPAY---LGKYKQCLSKALGLIKTY 232 (733)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCchhhhHHH---HHHHHHHHHHHHHHHHHH
Confidence 45 68999999999999999888888776653 234666778888888888
No 30
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=71.38 E-value=41 Score=27.92 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 118 METLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 118 mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
-=..+.+|-.-+..|++.|-.++.....+..++.|
T Consensus 61 T~~~~~~fa~~V~~vss~mv~le~~~~~v~~~~~~ 95 (95)
T PF12731_consen 61 TLALLHSFASRVATVSSSMVELESAKDAVHDDFSN 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 34566899999999999999999998888877765
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=68.87 E-value=78 Score=30.39 Aligned_cols=61 Identities=13% Similarity=0.289 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
-..|..+++.-...++.++.+....+..+.+...+|..|++ ++.+.......|.|++.+++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~-------qi~~~~~~~~~l~p~m~~m~ 111 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ-------QIEQIEETRQELVPLMEQMI 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555544 67777777888888777654
No 32
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.79 E-value=64 Score=28.33 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhhhc-CChHHHHHhhcCC
Q 036757 153 RKVAESKLAKFVEDII-IPPRMVDIIVDGE 181 (385)
Q Consensus 153 Rk~~~~~L~~~V~~i~-Ipp~lI~~I~~g~ 181 (385)
...+...|..-+.... .+..++....+|+
T Consensus 94 ~~~l~~~L~~~~~e~eeeSe~lae~fl~g~ 123 (150)
T PF07200_consen 94 PDALLARLQAAASEAEEESEELAEEFLDGE 123 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-S-SSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344455555555554 5566666677777
No 33
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.92 E-value=1.1e+02 Score=31.51 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=13.2
Q ss_pred cC-HHHHHHHHHHHHHHHhh
Q 036757 200 VN-EEYMRSLEILSKKLKFI 218 (385)
Q Consensus 200 v~-e~~i~~l~~L~~kl~~i 218 (385)
|+ ++|+++++.|.++.=+.
T Consensus 331 i~l~~yLr~VR~lsReQF~~ 350 (365)
T KOG2391|consen 331 IDLDQYLRHVRLLSREQFIL 350 (365)
T ss_pred eeHHHHHHHHHHHHHHHHHH
Confidence 67 67777777777765444
No 34
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.54 E-value=1.6e+02 Score=33.55 Aligned_cols=95 Identities=11% Similarity=0.217 Sum_probs=59.5
Q ss_pred HHHHHHhhcCC------ChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 036757 60 DVVANILSKGT------TLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS 133 (385)
Q Consensus 60 ~~v~~~L~~g~------dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS 133 (385)
+.++.++..|. .|...++.-+.|+..+-....|+|+..-+++..+ ...+.++-..++.++..|..++
T Consensus 35 P~lRs~~d~~~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~V-------r~daq~Lks~vsd~N~rLQ~~g 107 (800)
T KOG2176|consen 35 PTLRSVYDGNQHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKV-------RGDAQKLKSQVSDTNRRLQESG 107 (800)
T ss_pred hHHHHHHccCCcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHhhhhhHHHHHH
Confidence 67777776652 3445555556677777777888888874444433 3344456667778888888887
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 134 SDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 134 ~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
.++-..-+ .|.+-+..+..+...|+-+.
T Consensus 108 ~eLiv~~e-------~lv~~r~~~rnit~ai~~l~ 135 (800)
T KOG2176|consen 108 KELIVKKE-------DLVRCRTQSRNITEAIELLT 135 (800)
T ss_pred HHHHHHHH-------HHHHHHHHHhhHHHHHHHHH
Confidence 77655544 34444555555555555544
No 35
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=66.47 E-value=95 Score=28.44 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
+..|...|.-++..+++|.-.|+--.+||+.++..|..++.+
T Consensus 114 l~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 114 LRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 678888899999999999999999999999999999999875
No 36
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=66.19 E-value=30 Score=27.95 Aligned_cols=52 Identities=12% Similarity=0.276 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETL-LSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~-L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
+..+...++.+..+....+-+ +..|..-|..++..|..++++...+..++.+
T Consensus 37 i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 37 IDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555566666666655555443 5559999999999999999998888877663
No 37
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=66.07 E-value=50 Score=28.92 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=15.4
Q ss_pred hhhhcCChHHHHHhhcCC
Q 036757 164 VEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 164 V~~i~Ipp~lI~~I~~g~ 181 (385)
+.++.||+++++-|-+|.
T Consensus 59 ~~~~~IP~evl~yID~Gr 76 (128)
T PF09748_consen 59 LQDIQIPLEVLEYIDDGR 76 (128)
T ss_pred cccCCCCHHHHHHHhCCC
Confidence 455889999999999986
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.89 E-value=2e+02 Score=31.15 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCCh-HHHHHhhcCCCCCCCcchhhhcCCccccc
Q 036757 122 LSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPP-RMVDIIVDGENWNPFYPIILICGGAFIQV 200 (385)
Q Consensus 122 L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp-~lI~~I~~g~~~~~~~~~~~~~~~~~~~v 200 (385)
.+..+..+..+..++..++.+-..+...+..-+..+.....-+..+.--= .+-+.|...+ .|. +
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~-----lpg----------i 442 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN-----LPG----------L 442 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC----------C
Confidence 35555566666666666666666666666655555444433333332111 2233333433 121 6
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 036757 201 NEEYMRSLEILSKKLKFI 218 (385)
Q Consensus 201 ~e~~i~~l~~L~~kl~~i 218 (385)
.+.|+..+..+..++..+
T Consensus 443 p~~y~~~~~~~~~~i~~l 460 (569)
T PRK04778 443 PEDYLEMFFEVSDEIEAL 460 (569)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 677777766666666654
No 39
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=64.70 E-value=94 Score=28.22 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 103 SLHDQIRDCDAILSQMETLLSGFQ 126 (385)
Q Consensus 103 ~L~~qI~~cd~~L~~mE~~L~~Fq 126 (385)
.....++..+.....+.+.+...+
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 40
>PRK11637 AmiB activator; Provisional
Probab=63.75 E-value=1.9e+02 Score=30.03 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 102 VSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 102 ~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
..+..+|...+..+..++..|+.-+.+|..+..+|..++.+-..+..++..++.....+-..+-.-- ....+..|...+
T Consensus 71 ~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g-~~~~l~vLl~a~ 149 (428)
T PRK11637 71 ASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG-EHTGLQLILSGE 149 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHhcCC
Confidence 3344444444444444444445555555555555555555544444455554444333332222211 122456666665
No 41
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=61.96 E-value=61 Score=28.20 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 036757 73 REYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSM 144 (385)
Q Consensus 73 r~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~ 144 (385)
..-.+.|+.+.+.|.. +...|-+..+....+.+.++.+...+.++|.+-..-..|+..|.+-|+.+.+.+.
T Consensus 46 ~~Nqk~ie~e~k~L~~-~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~~~~ 116 (121)
T PF06320_consen 46 YENQKKIEKEAKQLQR-NTAKLAKQTDQWLKLVDSFNDALKEIGDVENWAEMIERDLRVIEETLRYVYEGSE 116 (121)
T ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446678888888776 6778999999999999999999999999999999999999999999998887654
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=60.88 E-value=1.5e+02 Score=28.09 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=42.0
Q ss_pred HhhcCCChHHHHHHHHhhhHHhhhh--hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 65 ILSKGTTLREYTKGVENNLRQVELD--SIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 65 ~L~~g~dLr~ys~~ve~eL~~le~~--~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
.|.....++.-...+++++..+... ++.. ...+...++.+.+..++...+.+++-...-+..|...+.++..|+.+
T Consensus 84 ~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~--~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 84 QLSTTPSLRTRVPDLENQVKTLTDKLNNIDN--TWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666655421 1211 11233455555556666666666655555555555555555555554
Q ss_pred hhhhh
Q 036757 143 SMDMG 147 (385)
Q Consensus 143 S~~m~ 147 (385)
...+.
T Consensus 162 ~~~~~ 166 (206)
T PRK10884 162 LDDKQ 166 (206)
T ss_pred HHHHH
Confidence 43333
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.77 E-value=1.1e+02 Score=31.01 Aligned_cols=68 Identities=21% Similarity=0.291 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhh
Q 036757 98 SDNLVSLHDQIRDC-DAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 98 ~~~l~~L~~qI~~c-d~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~ 165 (385)
..++..+...|+.| -+.|..+-+-|.....++.....++..+|++-..+..+++....-..++..-|.
T Consensus 188 ~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 188 LRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666 345666666666666666666666666666666666666654444444444333
No 44
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=59.93 E-value=67 Score=28.59 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChH
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPR 172 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~ 172 (385)
+|++.=.++-+|....++| .|+.+|++|..|+.-+..-..+-...+.+ ..-|+....++...+..--|+|+
T Consensus 3 ~~lk~l~n~R~lra~~re~--~~e~Lee~~ekl~~vv~er~~~~~~~~~~-------~~er~~~l~~i~~~~~~~Git~e 73 (134)
T PRK10328 3 VMLQSLNNIRTLRAMAREF--SIDVLEEMLEKFRVVTKERREEEEQQQRE-------LAERQEKINTWLELMKADGINPE 73 (134)
T ss_pred HHHHHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhCCCHH
Confidence 5566666778888888877 57889999998888887777766666553 34466666677777777777776
Q ss_pred HH
Q 036757 173 MV 174 (385)
Q Consensus 173 lI 174 (385)
-+
T Consensus 74 eL 75 (134)
T PRK10328 74 EL 75 (134)
T ss_pred HH
Confidence 65
No 45
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=58.85 E-value=1.7e+02 Score=27.90 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHH
Q 036757 230 LKDVQPELEKLRQKAVSKVYYFFLKGHGKE-IYNEVRAAYIDTMNKVLSAH 279 (385)
Q Consensus 230 ~~Dv~~~LekLr~kav~rir~fFL~~~~~~-~a~El~~aYv~tmsk~Y~~~ 279 (385)
+++-+...+|||.-++.|+. ||-++.-. +..+| .-..++|+.||...
T Consensus 143 ~~~~k~kf~KLR~DV~~Kl~--lLeenrv~vm~~QL-~~f~~a~~ay~sgn 190 (201)
T cd07660 143 FQAHKDKYEKLRNDVSVKLK--FLEENKVKVMHKQL-LLFHNAISAYFSGN 190 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHH-HHHHHHHHHHHHhH
Confidence 45566789999999999999 99876543 33443 45667777766544
No 46
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=58.84 E-value=56 Score=27.75 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 036757 105 HDQIRDCDAILSQMETLLSGFQA----------------------EIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAK 162 (385)
Q Consensus 105 ~~qI~~cd~~L~~mE~~L~~Fq~----------------------~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~ 162 (385)
..++++-.+.|.+|-++|.+-++ -|+.|..+|..||++ ++..+..-..+..+|..
T Consensus 8 l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~q---L~~~ldeYE~~VrrLE~ 84 (99)
T PF11083_consen 8 LTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQ---LGLYLDEYEKLVRRLEK 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34667777788888888863332 256688999999995 88888999999999999
Q ss_pred hhhhhcCCh
Q 036757 163 FVEDIIIPP 171 (385)
Q Consensus 163 ~V~~i~Ipp 171 (385)
||..+.+..
T Consensus 85 fvkvLn~~k 93 (99)
T PF11083_consen 85 FVKVLNISK 93 (99)
T ss_pred HHHHHcccc
Confidence 999887543
No 47
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=58.18 E-value=1.3e+02 Score=30.02 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 103 SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 103 ~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
+....++++...+.++-+++..+++.|+.+.+...++ ++|+..-.-+.=..+.-+-+||.+|-.+--=|
T Consensus 217 ~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~----------is~~~N~imk~LTi~s~iflPpTlIagiyGMN 285 (322)
T COG0598 217 EDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSL----------INNNQNEIMKILTIVSTIFLPPTLITGFYGMN 285 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhHHHHcccccC
Confidence 3344455555555555555555555555555444433 34555555566678899999999999986555
No 48
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=57.40 E-value=53 Score=26.52 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh--hhHHHHHHHHHHhhhhhcCChHHHHHh
Q 036757 116 SQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL--KNRKVAESKLAKFVEDIIIPPRMVDII 177 (385)
Q Consensus 116 ~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL--~NRk~~~~~L~~~V~~i~Ipp~lI~~I 177 (385)
..+...|..-+.+++.++-+-..|+++-..|.-.. .-|+.+...|..+|..+-+=-+-|..+
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999999999998888887666 457899999999999987766666554
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.93 E-value=4.2e+02 Score=31.85 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKI-------LQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~-------LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
.+.+|...|..+...+..+..-+...+........+|.. +.+....+..++..|..++..|..+.+.+.
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~ 898 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ 898 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666644444444444444444444 455566666677777888888888877763
No 50
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=56.51 E-value=1.8e+02 Score=27.38 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHH
Q 036757 72 LREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQME--TLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE--~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
-++|...++..|..+.. .+...++...+++.-+..+-.|-..|..+| .-|+..-..++.+...+..++.+
T Consensus 9 ~k~~i~~Le~~Lk~l~~-~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 9 KKQYLDSLESQLKQLYK-SLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888887764 566778888899999999999999999999 67888888888888888888775
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.19 E-value=2e+02 Score=28.05 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
...+..|...++.+..-...++.-|..-...+..++.+|..++++
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444
No 52
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=55.88 E-value=2.9e+02 Score=29.77 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhC
Q 036757 203 EYMRSLEILSKKLKFIG 219 (385)
Q Consensus 203 ~~i~~l~~L~~kl~~i~ 219 (385)
+-++.++.+.+++..+.
T Consensus 326 ~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 326 EVLEYAEKIKEELDQLD 342 (563)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44455566666666653
No 53
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.09 E-value=2e+02 Score=33.80 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=56.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 92 QDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE-KSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 92 q~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe-~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
..|+.-+.....+..++.+....+..+.+.+..-+.++.++-.+|+.|++ +...|+..+ ++++.++...-+.+
T Consensus 237 ~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~---~~L~~~~~~~~~~~ 310 (1174)
T KOG0933|consen 237 YEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEV---KALEDKLDSLQNEI 310 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhh---hhHHHHHHHHHHHH
Confidence 46777888888888888888899999999999999999999999999965 666777777 45555555444433
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.67 E-value=2.8e+02 Score=30.56 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 94 YIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 94 yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
.-.....+.+|..+|++....+..++..+..++..++.+..++...+.....+...++-++.+...|
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566888888888888888888888888888888888888888887776666666554444333
No 55
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=54.63 E-value=93 Score=27.74 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=51.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChH
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPR 172 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~ 172 (385)
+|++.=.++-+|..+.++| .|+.+|++|.+|..-+..-..+-...+.+ ..-|.....++...+...-|+|+
T Consensus 3 ~~lk~l~niR~lra~~re~--~~e~Lee~~ekl~~vv~er~ee~~~~~~~-------~~er~~kl~~~r~~m~~~Gis~~ 73 (135)
T PRK10947 3 EALKILNNIRTLRAQAREC--TLETLEEMLEKLEVVVNERREEESAAAAE-------VEERTRKLQQYREMLIADGIDPN 73 (135)
T ss_pred HHHHHHHhHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCCHH
Confidence 4556666778888888887 57888999988888877777766665553 33455555677777777777776
Q ss_pred HH
Q 036757 173 MV 174 (385)
Q Consensus 173 lI 174 (385)
-+
T Consensus 74 eL 75 (135)
T PRK10947 74 EL 75 (135)
T ss_pred HH
Confidence 65
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.17 E-value=4.6e+02 Score=31.46 Aligned_cols=162 Identities=19% Similarity=0.261 Sum_probs=94.5
Q ss_pred CCChHHHHHHHH-------hhhHHhhhhhHH--HHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 036757 69 GTTLREYTKGVE-------NNLRQVELDSIQ--DYIKES-DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKI 138 (385)
Q Consensus 69 g~dLr~ys~~ve-------~eL~~le~~~Iq--~yi~~~-~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~ 138 (385)
+..++++++.+. .+++.++...+. .=++.. ..+..|.++|+......+.+|.++++.+.++....++|..
T Consensus 372 ~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~ 451 (1293)
T KOG0996|consen 372 KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQ 451 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHH
Confidence 444455544444 445555544332 222222 3477788888888888999999999999999999999998
Q ss_pred HHHHhhhhhhhhhh---------------HHHHHHHHHHhhhhhcC-------ChHHHHHhhcCCCCCCCcchhhhcCCc
Q 036757 139 LQEKSMDMGLKLKN---------------RKVAESKLAKFVEDIII-------PPRMVDIIVDGENWNPFYPIILICGGA 196 (385)
Q Consensus 139 LQe~S~~m~~kL~N---------------Rk~~~~~L~~~V~~i~I-------pp~lI~~I~~g~~~~~~~~~~~~~~~~ 196 (385)
|++.-...+..|.- +...+.+|.++..++.- ...=...+...
T Consensus 452 L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~---------------- 515 (1293)
T KOG0996|consen 452 LEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR---------------- 515 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 88876665555542 22334444444443321 11111111111
Q ss_pred ccccCHHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH
Q 036757 197 FIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF 251 (385)
Q Consensus 197 ~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f 251 (385)
-+..++.+..|..+|...... ......++.++.+.|..++.++.+.-.++
T Consensus 516 ----~~~~~~~~e~lk~~L~~~~~~-~~e~~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 516 ----HETGLKKVEELKGKLLASSES-LKEKKTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 124455566677776664321 11233456778888888888887777654
No 57
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=54.01 E-value=1e+02 Score=23.95 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036757 76 TKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLL 122 (385)
Q Consensus 76 s~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L 122 (385)
...+...+..+...+- -.....+......|++|+..|.+||--+
T Consensus 5 ~~~i~~~l~~~~~~~~---~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSG---EQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp HHHHHHHHHHGGGS-C---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555443331 1333456777777788888888877666
No 58
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=53.43 E-value=2.6e+02 Score=28.40 Aligned_cols=99 Identities=12% Similarity=0.151 Sum_probs=65.3
Q ss_pred HHHhhhHHhhhhhHHHHHHhhh----hHHHHHHHHHHHHHHHH----HHHHHHHHHH--HHHHhHHHHHHHHHHHhhhhh
Q 036757 78 GVENNLRQVELDSIQDYIKESD----NLVSLHDQIRDCDAILS----QMETLLSGFQ--AEIGSISSDIKILQEKSMDMG 147 (385)
Q Consensus 78 ~ve~eL~~le~~~Iq~yi~~~~----~l~~L~~qI~~cd~~L~----~mE~~L~~Fq--~~L~~IS~eI~~LQe~S~~m~ 147 (385)
.+..+|+. +...+..|+.++. .+...+.+++....+|. .++..+-.-. .....++..|..|.+--..++
T Consensus 127 ~~~~~l~~-~~~~~~~~L~~A~~sD~~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~ 205 (353)
T cd09236 127 EANPKLYT-QAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELD 205 (353)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHH
Confidence 33444432 3444555655443 35555666666555662 2333332111 112257888999999888999
Q ss_pred hhhhhHHHHHHHHHHhhhhhcCChHHHHHh
Q 036757 148 LKLKNRKVAESKLAKFVEDIIIPPRMVDII 177 (385)
Q Consensus 148 ~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I 177 (385)
.--+.|+.+.+.|..-+..-.|.|.++...
T Consensus 206 ~l~~eR~~~~~~Lk~k~~~DDI~~~ll~~~ 235 (353)
T cd09236 206 RLESRRRRKVERARTKARADDIRPEILREA 235 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 999999999999999999999999999764
No 59
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=52.74 E-value=1.7e+02 Score=28.70 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 151 KNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 151 ~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
.||..-.-+.=.++.-|-+||.+|-.|--=+
T Consensus 251 s~~~N~~mk~LTvvt~IflP~t~IaGiyGMN 281 (318)
T TIGR00383 251 NNKMNEIMKILTVVSTIFIPLTFIAGIYGMN 281 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444455677888999999999997766
No 60
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=52.58 E-value=65 Score=35.47 Aligned_cols=63 Identities=14% Similarity=0.316 Sum_probs=54.3
Q ss_pred HHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 78 GVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 78 ~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
++.+++..++.......-+...+|..|..++...+.+|+.|++.|.+| +|-..|..+++.|+.
T Consensus 296 ~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKA 358 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHH
Confidence 555667777777777777788889999999999999999999999998 899999999998875
No 61
>PF15278 Sec3_C_2: Sec3 exocyst complex subunit
Probab=51.50 E-value=97 Score=25.17 Aligned_cols=63 Identities=11% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036757 78 GVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQ 140 (385)
Q Consensus 78 ~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQ 140 (385)
+++..+...=..++....++.=+......++++|..-.+.+-+.|+-|.-+|..+=.+.-.++
T Consensus 21 ~~~~S~~~s~~~~VE~L~~~~~~~~~i~~~L~D~~~GC~si~STiNL~S~~LS~~L~~VIN~E 83 (86)
T PF15278_consen 21 QTEFSFNESMISNVENLFRQKMQAQNIQSQLQDCIAGCDSIFSTINLFSMSLSTVLNDVINME 83 (86)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHhhcccccc
Confidence 333333333344555566666667777788888888888888999999999888755544443
No 62
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=51.23 E-value=2.3e+02 Score=30.36 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=56.3
Q ss_pred ChHHHHHHHHhhhHHhhhhhHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 036757 71 TLREYTKGVENNLRQVELDSIQDYIKES-DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGL 148 (385)
Q Consensus 71 dLr~ys~~ve~eL~~le~~~Iq~yi~~~-~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~ 148 (385)
+-|.|-++.-.++.+.+..+...|.+.. .+..+|........+.-..+|..|..+|.-+..+..+.+.+++.++.|..
T Consensus 332 Sqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 332 SQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555556666666654 44566667777778888889999999999999999999999987666653
No 63
>PF13166 AAA_13: AAA domain
Probab=50.84 E-value=3e+02 Score=30.14 Aligned_cols=58 Identities=12% Similarity=0.281 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 111 CDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 111 cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
....+..++..+..+...+..+...+..++.+...+..++.|-......++..+..+-
T Consensus 415 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 415 YQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3344556666677777777778888888888888888888888888888888888873
No 64
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=50.73 E-value=1.8e+02 Score=25.76 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc--CChH
Q 036757 103 SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII--IPPR 172 (385)
Q Consensus 103 ~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~--Ipp~ 172 (385)
.|-+.|++.|..+..+-..+..-|.....-.+.++.+++ |+..|.+=+.+...+-+.++.+. +|++
T Consensus 53 ~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~e----ls~~L~~~~~lL~~~v~~ie~LN~~LP~~ 120 (131)
T PF10158_consen 53 ALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNE----LSQQLSRCQSLLNQTVPSIETLNEILPEE 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCChh
Confidence 344555666666666666666556666655555555555 55555555555666666666654 4543
No 65
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.99 E-value=1.1e+02 Score=36.30 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHhhcCCChHHHHHHHHhhhHHhh---------hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 036757 63 ANILSKGTTLREYTKGVENNLRQVE---------LDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS 133 (385)
Q Consensus 63 ~~~L~~g~dLr~ys~~ve~eL~~le---------~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS 133 (385)
++.|+++--+-.|...+.+--+.++ .-+-++.-+-...+.+|.++|.+...-|..+|..|+.-++.|....
T Consensus 1187 A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~ 1266 (1758)
T KOG0994|consen 1187 AKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAG 1266 (1758)
T ss_pred HHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhh
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 036757 134 SDIKILQEKSMDMGLKLKNRKVAESKLAK 162 (385)
Q Consensus 134 ~eI~~LQe~S~~m~~kL~NRk~~~~~L~~ 162 (385)
.++++||.....+..-.+--+.-.++|..
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 66
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=49.56 E-value=1.8e+02 Score=25.33 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=71.4
Q ss_pred cCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 036757 68 KGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMG 147 (385)
Q Consensus 68 ~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~ 147 (385)
...|+....+.+...++.++...=.......+.+..=-..+.....++..|+.-+..-+...+.++.+|..=-++-....
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35677777777777777777655555555556666666677777778888888888888888888888887777777777
Q ss_pred hhhhhHHHHHHHHHHhhh
Q 036757 148 LKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 148 ~kL~NRk~~~~~L~~~V~ 165 (385)
.+|+|=..+-..|...+.
T Consensus 107 ~~L~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 107 SQLERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788877777666665543
No 67
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=49.08 E-value=84 Score=29.42 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=43.5
Q ss_pred HhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 036757 80 ENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAES 158 (385)
Q Consensus 80 e~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~ 158 (385)
+.+|..++.+++. | ...+.+|.+.+...++.+..+.++|+ +..+..+|..|...-..+..+|+|=|+...
T Consensus 78 ~eel~~ld~~i~~-l---~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 78 DEELQVLDGKIVA-L---TEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred hHHHHHHhHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666654332 1 23455555555555666666655554 345778888888887788888887666544
No 68
>PRK10869 recombination and repair protein; Provisional
Probab=47.50 E-value=3.2e+02 Score=29.59 Aligned_cols=167 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred hchHHHHHhhhChHHHHHHhhcCCChHHHH---HHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 47 EGLEQELEECKNHDVVANILSKGTTLREYT---KGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLS 123 (385)
Q Consensus 47 ~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys---~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~ 123 (385)
++|+++.....+.+-+.+.+..-..+- +. ..+-..|..+- ..+....+-.+.+..+.+.+..+...|+.+...|.
T Consensus 208 eeL~~e~~~L~n~e~i~~~~~~~~~~L-~~~~~~~~~~~l~~~~-~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~ 285 (553)
T PRK10869 208 EQIDEEYKRLANSGQLLTTSQNALQLL-ADGEEVNILSQLYSAK-QLLSELIGMDSKLSGVLDMLEEALIQIQEASDELR 285 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccHHHHHHHHH-HHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHH
Q 036757 124 GFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEE 203 (385)
Q Consensus 124 ~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~ 203 (385)
.|-.++..=-.++..+++| +..=-+=.|+--..+..++....--..=+..+.+.+
T Consensus 286 ~~~~~~~~dp~~l~~ie~R---l~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e---------------------- 340 (553)
T PRK10869 286 HYLDRLDLDPNRLAELEQR---LSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQE---------------------- 340 (553)
T ss_pred HHHhhcCCCHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCH----------------------
Q ss_pred HHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHH
Q 036757 204 YMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYY 250 (385)
Q Consensus 204 ~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~ 250 (385)
..++.|.+++..+.. .+.+....|.+.|.+|..++..
T Consensus 341 --~~l~~Le~e~~~l~~--------~l~~~A~~LS~~R~~aA~~l~~ 377 (553)
T PRK10869 341 --DDLETLALAVEKHHQ--------QALETAQKLHQSRQRYAKELAQ 377 (553)
T ss_pred --HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
No 69
>PRK03918 chromosome segregation protein; Provisional
Probab=46.26 E-value=4.8e+02 Score=29.37 Aligned_cols=8 Identities=38% Similarity=0.700 Sum_probs=4.5
Q ss_pred ccCcccHH
Q 036757 324 VFALGDRI 331 (385)
Q Consensus 324 ~FsLg~R~ 331 (385)
.++-|.|.
T Consensus 788 ~lS~G~~~ 795 (880)
T PRK03918 788 FLSGGERI 795 (880)
T ss_pred hCCHhHHH
Confidence 45566655
No 70
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=44.48 E-value=3.5e+02 Score=27.31 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=51.9
Q ss_pred ChHHHHHHHHhhhHHhhhhhHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 036757 71 TLREYTKGVENNLRQVELDSIQDYIKE--SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGL 148 (385)
Q Consensus 71 dLr~ys~~ve~eL~~le~~~Iq~yi~~--~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~ 148 (385)
.|++.-..+..++..+... ++=+.. .+.+..+...|..-+..+..+-..|..++.+|..+...|+...++-..+..
T Consensus 176 ~l~~~~~~L~~e~~~L~~~--~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 176 KLRDRKDALEEELRQLKQL--EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHh--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666554332 222222 345777777777777777777777888888888888888877777666666
Q ss_pred hhhh
Q 036757 149 KLKN 152 (385)
Q Consensus 149 kL~N 152 (385)
.+..
T Consensus 254 ~I~~ 257 (312)
T smart00787 254 EIAE 257 (312)
T ss_pred HHHH
Confidence 6663
No 71
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.94 E-value=1.6e+02 Score=24.81 Aligned_cols=54 Identities=15% Similarity=0.373 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGF--QAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~F--q~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
.+.+..|.+.+..-+.=|..+|..+..- +.|+..+.-+|..+..+-..|+.+++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3667777777777777777777777666 66666666666666665555555554
No 72
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=43.88 E-value=1e+02 Score=29.30 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 127 AEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 127 ~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
.+|.+|+.+|..+++|=..+..-|.+|+.....|.
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788888999999988889999999999888774
No 73
>PRK03918 chromosome segregation protein; Provisional
Probab=43.09 E-value=5.3e+02 Score=29.00 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=12.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Q 036757 92 QDYIKESDNLVSLHDQIRDCDAILSQ 117 (385)
Q Consensus 92 q~yi~~~~~l~~L~~qI~~cd~~L~~ 117 (385)
..+.+..+.+..+...+......+..
T Consensus 348 ~~~~~~~~~l~~~~~~l~~~~~~~~~ 373 (880)
T PRK03918 348 KELEKRLEELEERHELYEEAKAKKEE 373 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444444433
No 74
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=42.27 E-value=1.1e+02 Score=26.10 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 036757 113 AILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAK 162 (385)
Q Consensus 113 ~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~ 162 (385)
..+..||.-|..-..+++.+...|..|-+.+..+.....+-|....++.+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888999999999999999999998888765555555544
No 75
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.25 E-value=2.7e+02 Score=31.01 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=14.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 036757 92 QDYIKESDNLVSLHDQIRDCDAI 114 (385)
Q Consensus 92 q~yi~~~~~l~~L~~qI~~cd~~ 114 (385)
..|-...+.+..+..+|.+....
T Consensus 309 ~~y~~~hP~v~~l~~qi~~l~~~ 331 (754)
T TIGR01005 309 TTMLANHPRVVAAKSSLADLDAQ 331 (754)
T ss_pred HhhCCCCHHHHHHHHHHHHHHHH
Confidence 35666667777777777666544
No 76
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.11 E-value=1.1e+02 Score=26.37 Aligned_cols=48 Identities=19% Similarity=0.277 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 113 AILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 113 ~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
..+.+||.-|..-..+++.+...|..|-+++..+.+...+-|....++
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788899999999999999999999999999988877555444443
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.63 E-value=1.5e+02 Score=26.65 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhhhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEI--GSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L--~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
+..|..++..-......++..|....+.+ ..+...|..|+++...|..+|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544 2346666666666555555555
No 78
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.63 E-value=1.5e+02 Score=26.62 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhhhhhhhhhhHHHH
Q 036757 97 ESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSI-SSDIKILQEKSMDMGLKLKNRKVA 156 (385)
Q Consensus 97 ~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~I-S~eI~~LQe~S~~m~~kL~NRk~~ 156 (385)
+.+...+|...|......+..|++.|..++..-..| ..++..+...-..+...-+-||.+
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777778888888888888888888755555 347777777766666666666653
No 79
>PRK04863 mukB cell division protein MukB; Provisional
Probab=41.45 E-value=7.7e+02 Score=30.42 Aligned_cols=67 Identities=10% Similarity=0.142 Sum_probs=28.2
Q ss_pred HHHHhhhHHhhh--hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 036757 77 KGVENNLRQVEL--DSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKS 143 (385)
Q Consensus 77 ~~ve~eL~~le~--~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S 143 (385)
+.++..+..|+. +....|.....+...+...+......++.++..+..+...|.....++..++.+-
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEl 385 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARA 385 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444432 2233444444433333444444444444444444444444444444443333333
No 80
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=40.77 E-value=1.1e+02 Score=31.06 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
++.....++..+...|..++..|...+.++...-.+...|+.+-.....+|..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35555556666666666666666666666666666666666655555555543
No 81
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=5.6e+02 Score=28.57 Aligned_cols=70 Identities=10% Similarity=0.251 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSI----------SSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~I----------S~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
..+..|..++.+-...+..|+..+....+.|..+ ..+|+.++.+-..+..+|.|.+.-.+.|..=++.+-
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444443 567888899999999999998877777766555543
No 82
>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]
Probab=40.30 E-value=2.9e+02 Score=25.10 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=28.6
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 137 KILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 137 ~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
..|+++-..+-.-|.|-- +++.=++++.||-+++.-|-+|.
T Consensus 44 ~~L~qrl~tLv~~L~~l~----~~s~k~n~i~IPleVl~yIddGr 84 (147)
T KOG3046|consen 44 DALNQRLNTLVRGLQDLD----KLSSKLNDIQIPLEVLEYIDDGR 84 (147)
T ss_pred HHHHHHHHHHHHHhhhhH----HHHHhhccccCcHHHHHHHhcCC
Confidence 455665555555555444 34444578999999999999997
No 83
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.94 E-value=1.6e+02 Score=22.89 Aligned_cols=48 Identities=10% Similarity=0.325 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDM 146 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m 146 (385)
+.+.+|-..+.--+..++.+...+..-+..|..+...++.|.+|-..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777777777777777777777776654444
No 84
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.54 E-value=1.2e+02 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 111 CDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 111 cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
-.+.+.+++..+++-++++..||.+++.+.+
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554
No 85
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=39.37 E-value=6.5e+02 Score=28.94 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 036757 202 EEYMRSLEILSKKLKFIG 219 (385)
Q Consensus 202 e~~i~~l~~L~~kl~~i~ 219 (385)
+...+.+..|..+|..+.
T Consensus 954 ~~l~~~l~~l~~~i~~l~ 971 (1164)
T TIGR02169 954 EDVQAELQRVEEEIRALE 971 (1164)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 355566788888888763
No 86
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=38.86 E-value=1.9e+02 Score=28.06 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=40.2
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhh---
Q 036757 88 LDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFV--- 164 (385)
Q Consensus 88 ~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V--- 164 (385)
..-+.+||++ .+.+|..|++.+...++.+.....+= ..-+.....+..|+. .+.+.+-=..+|..++
T Consensus 120 k~e~~~wl~~--~Id~L~~QiE~~E~E~E~L~~~~kKk-k~~~~~~~r~~~l~~-------~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 120 KEEARDWLKD--SIDELNRQIEQLEAEIESLSSQKKKK-KKDSTKQERIEELES-------RIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccC-ccCccchhHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3445566653 46777777777777776665532110 111233444444444 3333333333443332
Q ss_pred hhhcCChHHHHHhhc
Q 036757 165 EDIIIPPRMVDIIVD 179 (385)
Q Consensus 165 ~~i~Ipp~lI~~I~~ 179 (385)
+.=.|+|+-|..|-+
T Consensus 190 ~N~~l~~e~V~~ike 204 (233)
T PF04065_consen 190 DNDELDPEQVEDIKE 204 (233)
T ss_pred HcCCCCHHHHHHHHH
Confidence 223466666665543
No 87
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=38.44 E-value=7.7e+02 Score=29.55 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=35.7
Q ss_pred cCCChHHH--HHHHHhhhHHhhhhhHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 036757 68 KGTTLREY--TKGVENNLRQVELDSIQDYIKES-DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS 133 (385)
Q Consensus 68 ~g~dLr~y--s~~ve~eL~~le~~~Iq~yi~~~-~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS 133 (385)
.|.|--+| .+.+|++|+.++.---..|+-+- .++..|.+.+-.-...+..|.+-+...-.++..+.
T Consensus 1152 ~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKnltdvK~missf~d~laeiE~Lr 1220 (1439)
T PF12252_consen 1152 SGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKNLTDVKSMISSFNDRLAEIEFLR 1220 (1439)
T ss_pred cCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHhhhhHHHHHH
Confidence 35554555 36788888887776666665542 34444444343334445555544444444444443
No 88
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=38.30 E-value=1.9e+02 Score=30.51 Aligned_cols=92 Identities=18% Similarity=0.372 Sum_probs=66.5
Q ss_pred HHHHHHHHhhhHHhhhhh------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHhhh
Q 036757 73 REYTKGVENNLRQVELDS------IQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIK-ILQEKSMD 145 (385)
Q Consensus 73 r~ys~~ve~eL~~le~~~------Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~-~LQe~S~~ 145 (385)
+.|..-|++.|..+..+- +.+|+.. .|.=-++.|...-.+++.+=.+...--+=+++-+. .+|.|+..
T Consensus 268 ~AY~~iV~~RL~eLrE~~i~g~~tl~eF~~R-----Rl~PAmrTC~a~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~ 342 (420)
T PF11902_consen 268 RAYYEIVEQRLAELREERIPGYQTLSEFLER-----RLTPAMRTCEAVERRQEDLSRRVARATDLLRTRVDVELEQQNQD 342 (420)
T ss_pred HHHHHHHHHHHHHhcccccCCCCcHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 466666666666665443 3444443 35556888988888888877776666555666665 47888999
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhcC
Q 036757 146 MGLKLKNRKVAESKLAKFVEDIII 169 (385)
Q Consensus 146 m~~kL~NRk~~~~~L~~~V~~i~I 169 (385)
+=..++-|-.+.=+|.+-|+-+.|
T Consensus 343 LL~SM~rRa~lQLrLQqtVEGLSV 366 (420)
T PF11902_consen 343 LLASMDRRARLQLRLQQTVEGLSV 366 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999888764
No 89
>PRK04863 mukB cell division protein MukB; Provisional
Probab=38.15 E-value=4.5e+02 Score=32.35 Aligned_cols=44 Identities=9% Similarity=0.265 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
..+.+|...++.....+...+..+...+.++..+..++..++.+
T Consensus 355 ~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeq 398 (1486)
T PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQ 398 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
No 90
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=38.07 E-value=6.5e+02 Score=31.66 Aligned_cols=58 Identities=22% Similarity=0.377 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 104 LHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 104 L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
+-.++..+...++.+...+..-..+|..+++.|..|+.+...|+.+++--+.=..-+.
T Consensus 835 ~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~ 892 (1822)
T KOG4674|consen 835 LEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLLNLD 892 (1822)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Confidence 3345555556666666666677777777777777777777777777765444444444
No 91
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=37.40 E-value=3.1e+02 Score=24.64 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=50.4
Q ss_pred HHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 62 VANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 62 v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
++.+=.....|.+....++.+|...+..--.. +.+.. .-...|..-...++.|-.-|+.+..+|.+++++-..|-.
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~-~~daE---n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECL-ILDAE---NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444566777888888888887665432221 11111 112223333445555666666677777777777777777
Q ss_pred Hhhhhhhhhh
Q 036757 142 KSMDMGLKLK 151 (385)
Q Consensus 142 ~S~~m~~kL~ 151 (385)
.+..+..+..
T Consensus 88 ~lq~~q~kv~ 97 (140)
T PF10473_consen 88 ELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 92
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=37.24 E-value=3.2e+02 Score=24.74 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHH--------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036757 231 KDVQPELEKLRQKAVSKVYYF--------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEKLQL 292 (385)
Q Consensus 231 ~Dv~~~LekLr~kav~rir~f--------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~KL~~ 292 (385)
.|.-...-.-|.+++.|+..| .+.+++..-+..+|..+.+ ||..|...+---...++|+..
T Consensus 72 ~~~i~~Y~~~Ra~~v~k~~K~p~v~DY~~~v~e~Dek~~~~lr~~~~e-lRn~Y~~l~D~i~KN~eKi~~ 140 (150)
T PF02252_consen 72 LDQISKYFSARAKAVSKAAKYPHVEDYRQAVHELDEKEYISLRLIVLE-LRNNYATLYDIISKNFEKIKK 140 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTBTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHhcC
Confidence 344455566788999999876 8888999989999888876 567777777777788888874
No 93
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=36.60 E-value=4.6e+02 Score=26.43 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 150 LKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 150 L~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
+.||..-.-++=..+.-+-+||.+|-.|--=+
T Consensus 248 i~~~~N~~mk~lTv~s~if~pptliagiyGMN 279 (316)
T PRK11085 248 INIEQNRIIKIFSVVSVVFLPPTLVASSYGMN 279 (316)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45666677777788899999999999987655
No 94
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=36.38 E-value=8e+02 Score=29.15 Aligned_cols=53 Identities=11% Similarity=0.204 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
..+..|.++|..|.......|..|..|+..+..++.+|.+++.+-......+.
T Consensus 668 ~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~ 720 (1074)
T KOG0250|consen 668 REASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMT 720 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999999999999886544444433
No 95
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.03 E-value=6.3e+02 Score=27.87 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=71.8
Q ss_pred hHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 72 LREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
|++=++.+..+++++...+-.+|+.-+..+...+.....++.-+..+= ..+-...+.+..-+.++..++-.-+
T Consensus 43 La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~-------l~~~~L~s~~~~f~~~~~~i~e~~~ 115 (581)
T KOG2069|consen 43 LAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELS-------LQLPELTSPCKRFQDFAEEISEHRR 115 (581)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHH-------HhhHHhhhHHHHHHHHHHHhhHhHH
Confidence 566677888888888888888888877776666666655543333221 1444455555555566656655555
Q ss_pred hHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 152 NRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 152 NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
-.+.......+..+.+.+|.-|=+.|..|.
T Consensus 116 ~~~~~l~~~~~l~ellelp~lM~~cir~~~ 145 (581)
T KOG2069|consen 116 LNSLTLDKHPQLLELLELPQLMDRCIRNGY 145 (581)
T ss_pred HHHHHHhhcchhHHHHhHHHHHHHHHHhhh
Confidence 556677788888899999999999999988
No 96
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.66 E-value=1.9e+02 Score=23.97 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHH
Q 036757 100 NLVSLHDQIRDCDAILSQMETLL----------SGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVA 156 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L----------~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~ 156 (385)
++..+-+.|..|..-|+.+|..| .....++..+.+.+...+.+-..+.. .|||..
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk--ENrK~~ 70 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK--ENRKSM 70 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH--hhhhhH
Confidence 35556666667777777777666 23445555555555555555444433 566654
No 97
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=35.30 E-value=50 Score=33.40 Aligned_cols=106 Identities=16% Similarity=0.281 Sum_probs=75.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcC
Q 036757 90 SIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIII 169 (385)
Q Consensus 90 ~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~I 169 (385)
++..|..-...+.-+...+..+...|...+..|..-+..|..+...+..|+.+- ......+..++..+...-..+.-
T Consensus 205 A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~---~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 205 AMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEY---EEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcc
Confidence 456677777777778888888888888888888888999999888888888853 33344455555555555555554
Q ss_pred ChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhh
Q 036757 170 PPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFI 218 (385)
Q Consensus 170 pp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i 218 (385)
...++..+.+.. ..|-+.+..|..++..+
T Consensus 282 A~~Li~~L~~E~--------------------~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 282 AEKLISGLSGEK--------------------ERWSEQIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHCCHHHH--------------------HCCHCHHHHHHHHHHHH
T ss_pred HHHHHhhhcchh--------------------hhHHHHHHHHHHHhccc
Confidence 444444433322 47889999998888876
No 98
>PRK11020 hypothetical protein; Provisional
Probab=35.10 E-value=1.5e+02 Score=25.85 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH
Q 036757 98 SDNLVSLHDQIRDCDAILSQME-----TLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE-----~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
-.++..|++.++.|..-+...+ +++..|..++..+..+|..|..+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999998888886 57899999999999999999664
No 99
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=35.05 E-value=3.7e+02 Score=24.85 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=48.3
Q ss_pred hHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHH
Q 036757 72 LREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETL--LSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~--L~~Fq~~L~~IS~eI~~LQe 141 (385)
.++|...++..|..+. ...+..++...++..-+.++-.+-..|...|.- |+..-..++.+-..+..+.+
T Consensus 29 ~~~~~~~le~~Lk~l~-~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~ 99 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLY-KSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLE 99 (236)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3677777888888774 456677777888888888888888888888777 65555555555555555443
No 100
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=34.18 E-value=6.7e+02 Score=27.84 Aligned_cols=64 Identities=14% Similarity=0.287 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhCC
Q 036757 152 NRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIGV 220 (385)
Q Consensus 152 NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~ 220 (385)
-|+.+...|..-+....||+.+..-|.. . |.-..=.++...|+ -.+.|.+.+..+..=+-.+..
T Consensus 488 Ar~~v~~~l~~~l~~~~~P~~v~~fL~~-~-W~~vL~~~~lr~G~---~s~~w~~~~~~~~~Liws~~~ 551 (729)
T PF07793_consen 488 ARQQVAQELNERLAGRQLPEVVRDFLDG-G-WADVLVLALLREGE---DSEDWQEALALVDDLIWSVQP 551 (729)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH-H-HHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHHhCc
Confidence 3566778888888888888877665554 3 32222223334554 568999998888777777743
No 101
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.01 E-value=5.5e+02 Score=26.52 Aligned_cols=17 Identities=12% Similarity=0.138 Sum_probs=8.7
Q ss_pred CCCCChhchHHHHHhhh
Q 036757 41 GDDISLEGLEQELEECK 57 (385)
Q Consensus 41 ~~d~~~~~l~~~l~~~~ 57 (385)
...+|-.+-..++++-+
T Consensus 188 es~vd~~eWklEvERV~ 204 (359)
T PF10498_consen 188 ESKVDPAEWKLEVERVL 204 (359)
T ss_pred cccCCHHHHHHHHHHHh
Confidence 33555555555555443
No 102
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.13 E-value=4.6e+02 Score=27.44 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=10.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 036757 93 DYIKESDNLVSLHDQIRDCDA 113 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~ 113 (385)
.|-.+++.+..+..+|.....
T Consensus 269 ~y~~~hP~v~~l~~qi~~l~~ 289 (498)
T TIGR03007 269 RYTDKHPDVIATKREIAQLEE 289 (498)
T ss_pred HhcccChHHHHHHHHHHHHHH
Confidence 455555555555555554433
No 103
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=33.08 E-value=1e+02 Score=30.51 Aligned_cols=78 Identities=22% Similarity=0.383 Sum_probs=54.2
Q ss_pred CCChhchHHHHHhhh-ChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHH----------HHHHhhhhHHHHHHHHHHH
Q 036757 43 DISLEGLEQELEECK-NHDVVANILSKGTTLREYTKGVENNLRQVELDSIQ----------DYIKESDNLVSLHDQIRDC 111 (385)
Q Consensus 43 d~~~~~l~~~l~~~~-~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq----------~yi~~~~~l~~L~~qI~~c 111 (385)
.--+.+.|++|+.|. ..+-=..+..+-..++.-.+..|-.++.||-.++. .|+..-++=..+...|..|
T Consensus 185 e~~l~dkekEl~sfK~sEeeNar~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~ac 264 (311)
T PF04642_consen 185 EDQLSDKEKELESFKRSEEENARAVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNAC 264 (311)
T ss_pred ccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHH
Confidence 334788899999998 22222234455556777788888888888766653 5666666667777788888
Q ss_pred HHHHHHHHH
Q 036757 112 DAILSQMET 120 (385)
Q Consensus 112 d~~L~~mE~ 120 (385)
..-+..||+
T Consensus 265 EEkl~kmeE 273 (311)
T PF04642_consen 265 EEKLKKMEE 273 (311)
T ss_pred HHHHhcccH
Confidence 888877776
No 104
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.73 E-value=7e+02 Score=27.40 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=5.7
Q ss_pred HHHHhhhhHHH
Q 036757 366 LLMDTATSEYL 376 (385)
Q Consensus 366 ~LiDnat~EYl 376 (385)
.|-+.++.||.
T Consensus 623 ~l~~~i~~~y~ 633 (650)
T TIGR03185 623 LLKPNISHEYL 633 (650)
T ss_pred HHHHHhhhheE
Confidence 34445566653
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=32.02 E-value=5e+02 Score=25.43 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=44.9
Q ss_pred hHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhh
Q 036757 90 SIQDYIKES-DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVED 166 (385)
Q Consensus 90 ~Iq~yi~~~-~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~ 166 (385)
+++.+++.. ..+..+.+.+.+....++.|+...+.++.+|..++..|...+.+. .-....+-.+++..++...-++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHH
Confidence 344333332 335555566666666777777777777777777777777777766 3333344455555555544433
No 106
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.88 E-value=5.2e+02 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=11.4
Q ss_pred HHhHHHHHHHHHHHhhhhhhhhhhHHH
Q 036757 129 IGSISSDIKILQEKSMDMGLKLKNRKV 155 (385)
Q Consensus 129 L~~IS~eI~~LQe~S~~m~~kL~NRk~ 155 (385)
...+..+|+.|+.+=..+..++.+|+.
T Consensus 75 i~~~~~eik~l~~eI~~~~~~I~~r~~ 101 (265)
T COG3883 75 IDQSKAEIKKLQKEIAELKENIVERQE 101 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 107
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.84 E-value=9.4e+02 Score=28.60 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
......|+.+|+.|...|..=..+|++..........+++.++.+....+.++.
T Consensus 480 ~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~e 533 (1195)
T KOG4643|consen 480 EAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLE 533 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777776666666666666666666666666555555543
No 108
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.65 E-value=7e+02 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHHHHHH---HHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH
Q 036757 203 EYMRSLEILS---KKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF 251 (385)
Q Consensus 203 ~~i~~l~~L~---~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f 251 (385)
.|+.+++.|. ..|+.+.. +...+.+..+.+..++..+|......+.+.
T Consensus 123 ~~~~Aa~~L~~~~~~L~~l~~-~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~ 173 (593)
T PF06248_consen 123 NYLDAADLLEELKSLLDDLKS-SKFEELKILKLLKDEYSELRENLQYQLSEE 173 (593)
T ss_pred CHHHHHHHHHHHHHHHHhcCc-CcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777755554 44444422 333456777778888888888888888775
No 109
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.55 E-value=4.6e+02 Score=24.91 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
=..|+.+-+.....-..+..-+..+|..-+.+..++.-++.++..+.. ....+...|
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~---~~~~Lq~Ql 139 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT---EKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH---hhHHHHHHH
Confidence 456777777777777778888888888888888888888888887766 333444444
No 110
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.10 E-value=1.5e+02 Score=30.77 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred ccccCCCCChhchHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 036757 37 EDASGDDISLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILS 116 (385)
Q Consensus 37 ~~~~~~d~~~~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~ 116 (385)
+++.+.++.||+||+.|. .+|. ++..-.+....-.++|.=.--.=.+|..++..| +--...+
T Consensus 1 ~~il~~~~~LeeLe~kLa--~~d~---------------~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I-e~~~~~s 62 (379)
T PF11593_consen 1 SEILTPNLKLEELEEKLA--SNDN---------------SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI-EEMNNKS 62 (379)
T ss_pred CCcccCCCcHHHHHHHHh--cCCc---------------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-hcccccC
Q ss_pred HHHHHH------HHHHHHHHhHHHHHHHHH
Q 036757 117 QMETLL------SGFQAEIGSISSDIKILQ 140 (385)
Q Consensus 117 ~mE~~L------~~Fq~~L~~IS~eI~~LQ 140 (385)
++|.+| -.++..|..+|++++.||
T Consensus 63 ~qeKFl~IR~KlleL~~~lQ~lS~df~~Lq 92 (379)
T PF11593_consen 63 PQEKFLLIRSKLLELYNKLQELSSDFQKLQ 92 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 111
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=3.7e+02 Score=23.49 Aligned_cols=103 Identities=24% Similarity=0.361 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcC
Q 036757 115 LSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICG 194 (385)
Q Consensus 115 L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~ 194 (385)
-.+||+.-..||.-=..++.-+...|. |.++|.-.+.+..+|..+=.| .-|-.+. || . |
T Consensus 4 ~~kmee~~~kyq~LQk~l~k~~~~rqk----le~qL~Enk~V~~Eldlle~d-----~~VYKli-Gp-------v-L--- 62 (120)
T KOG3478|consen 4 QKKMEEEANKYQNLQKELEKYVESRQK----LETQLQENKIVLEELDLLEED-----SNVYKLI-GP-------V-L--- 62 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHhccc-----chHHHHh-cc-------h-h---
Confidence 356777777777665556666665555 888888888888888553322 2222222 22 0 1
Q ss_pred CcccccCHHHHHHHHHHHHHHHhhCCCCccc-hhhhhhhHHHHHHHHHHHHH
Q 036757 195 GAFIQVNEEYMRSLEILSKKLKFIGVDPMVK-TSKALKDVQPELEKLRQKAV 245 (385)
Q Consensus 195 ~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~-~~~A~~Dv~~~LekLr~kav 245 (385)
|-.+--++=.-..++|.||.. .++ -..+..|.+..+++-|...+
T Consensus 63 -----vkqel~EAr~nV~kRlefI~~--Eikr~e~~i~d~q~e~~k~R~~v~ 107 (120)
T KOG3478|consen 63 -----VKQELEEARTNVGKRLEFISK--EIKRLENQIRDSQEEFEKQREAVI 107 (120)
T ss_pred -----hHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333444456777777732 222 23456777777777775543
No 112
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=30.36 E-value=2.8e+02 Score=22.03 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
.+..|...|+.+...+.-+..-+..-+..-...+++...|++.+..+. ..|......|..++..+
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~---~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK---QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 466777777887777777777777777777777788888887766665 56777777777777654
No 113
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=30.35 E-value=7.6e+02 Score=27.06 Aligned_cols=8 Identities=25% Similarity=0.173 Sum_probs=3.4
Q ss_pred HHHHhHHH
Q 036757 244 AVSKVYYF 251 (385)
Q Consensus 244 av~rir~f 251 (385)
...+++.|
T Consensus 453 ~~~~~~~~ 460 (544)
T PF04163_consen 453 ILLKSSKF 460 (544)
T ss_pred HHHHHHHH
Confidence 33344444
No 114
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=5.2e+02 Score=28.28 Aligned_cols=121 Identities=18% Similarity=0.325 Sum_probs=59.6
Q ss_pred ccccCcccccCcc-cccccCCCCChhc-hHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhh
Q 036757 23 VFDLGAFVGDLTF-EEDASGDDISLEG-LEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDN 100 (385)
Q Consensus 23 ~~~~~~~~~~~~~-~~~~~~~d~~~~~-l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~ 100 (385)
++.+|-++|--.. -.|+++-+||-+- |++-+.+|. +...+...+|.-.-.+.++.+++.+==+|-.-|+.-.+.
T Consensus 11 gea~g~pagpdplsptDlngahFDpEvyldkL~REcp----LaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdT 86 (636)
T KOG2346|consen 11 GEALGLPAGPDPLSPTDLNGAHFDPEVYLDKLPRECP----LAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDT 86 (636)
T ss_pred CcccCCCCCCCCCCccccCCCCCCHHHHHHHhhhcCC----HHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchH
Confidence 3444444443322 2346666676554 333344443 222333444444444555555555544455555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
+. +|.+-..+-..+..+.+..|..+|.+|..++.-|-.++....+|+
T Consensus 87 ir--------------kmk~~f~~me~eMd~L~~~ms~i~~~s~~l~g~L~ekre~I~kLg 133 (636)
T KOG2346|consen 87 IR--------------KMKSNFFGMEQEMDGLEEVMSSIQSKSDGLAGSLFEKRELIKKLG 133 (636)
T ss_pred HH--------------HHHhhhhhhcchhhhHHHHHHHHhhhhccccchhHHhHHHHHHhc
Confidence 43 344444444445555566666666666666666665555555554
No 115
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.21 E-value=8.6e+02 Score=27.63 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCC
Q 036757 103 SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGEN 182 (385)
Q Consensus 103 ~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~ 182 (385)
+||.++..=-..|-.=-+-+..+...|.+....+..||+.-.++-.+++|-.+....=+..+..+.+-.++++.+...-
T Consensus 90 qLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt~vl~rLhva~~lLrrsgr~l- 168 (797)
T KOG2211|consen 90 QLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRRSGRAL- 168 (797)
T ss_pred HHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred CCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH-----HHhhcC
Q 036757 183 WNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF-----FLKGHG 257 (385)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f-----FL~~~~ 257 (385)
.|.+||+...+.+...-.+|.+-......-+..+=..-|-.- |+-+-.
T Consensus 169 ---------------------------~LskkL~~l~~~~~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~~s~ 221 (797)
T KOG2211|consen 169 ---------------------------ELSKKLASLNSSMVVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSS 221 (797)
T ss_pred ---------------------------HHHHHHHhhhccCCHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHH
Q 036757 258 KEIYNEVRAAYIDTM 272 (385)
Q Consensus 258 ~~~a~El~~aYv~tm 272 (385)
+++.++-...-..+|
T Consensus 222 ~evrN~a~~vLe~gl 236 (797)
T KOG2211|consen 222 PEVRNKALPVLEAGL 236 (797)
T ss_pred HHHHHHHHHHHHHHH
No 116
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=30.16 E-value=4.7e+02 Score=24.58 Aligned_cols=110 Identities=18% Similarity=0.258 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhhHHhhhhh--------HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Q 036757 72 LREYTKGVENNLRQVELDS--------IQDYIKESDNLVSLHDQIRDCDAILSQMET-------------LLSGFQAEIG 130 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~~~--------Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~-------------~L~~Fq~~L~ 130 (385)
...+.+.+++++..+|... .++...-...+..++..+.....++.++-. .+..-..++.
T Consensus 123 ~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (292)
T PF01544_consen 123 YFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIE 202 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 3444555555555555443 344444444555555555555555522211 1233333333
Q ss_pred hHHHHHHHHHHHhhhh----hhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 131 SISSDIKILQEKSMDM----GLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 131 ~IS~eI~~LQe~S~~m----~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
.+.+.+..++++...+ ..++.+|..-.-+.=.++.-+-+|..+|..+-.=+
T Consensus 203 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~LT~~t~iflPlt~i~g~fGMN 257 (292)
T PF01544_consen 203 RLLERAESLRERLESLQDLYQSKLSNRQNRVMKVLTIVTAIFLPLTFITGIFGMN 257 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3333333333333222 22333343333344466677778888888776554
No 117
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.05 E-value=2.2e+02 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLK 149 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~k 149 (385)
+.+++..|+.-...+..++.-+..=+.++..+..++..+...+..|+.|
T Consensus 82 ~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 82 IQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455555555555555555555555555566655555555544433
No 118
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.00 E-value=7.8e+02 Score=27.06 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHH----HHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH
Q 036757 203 EYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAV----SKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSA 278 (385)
Q Consensus 203 ~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav----~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~ 278 (385)
++.-.++.|.+.|.|..... ..++.-++.++. .+.|+||=.+-...+ .|+|..|=..|...=..
T Consensus 201 d~~n~~q~Lleel~f~~~~h-----------~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai-~eiRaqye~~~~~nR~d 268 (546)
T KOG0977|consen 201 DLQNRVQTLLEELAFLKRIH-----------KQEIEEERRKARRDTTADNREYFKNELALAI-REIRAQYEAISRQNRKD 268 (546)
T ss_pred HHHhHHHHHHHHHHHHHhcc-----------HHHHHHHHHHHhhcccccchHHHHHHHHHHH-HHHHHHHHHHHHHhHHH
Confidence 45555777888888764311 123333333333 455777755544444 68888887766554433
Q ss_pred HHHHHHHHHHHhhh
Q 036757 279 HFRAYIQALEKLQL 292 (385)
Q Consensus 279 ~Fr~Y~~~L~KL~~ 292 (385)
.=..|-..+.+++.
T Consensus 269 iE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 269 IESWYKRKIQEIRT 282 (546)
T ss_pred HHHHHHHHHHHHHh
Confidence 33367777777774
No 119
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.95 E-value=8.7e+02 Score=27.61 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh------cCChHHHHHhhcCCCCCCCcchhhhcCCccccc
Q 036757 127 AEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI------IIPPRMVDIIVDGENWNPFYPIILICGGAFIQV 200 (385)
Q Consensus 127 ~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i------~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v 200 (385)
+++-.++.-...++++...+++.+.|-..+..+-..-++++ .+.-.....-+..+ ...+
T Consensus 558 ~~~~~i~~~~~~i~~~~~~~~v~l~~i~lL~~~~~~~L~~~~~s~l~~~~~~~~~~~l~~~---------------~t~~ 622 (806)
T PF05478_consen 558 NELLNISQYTDEIQSEFESLNVDLSNITLLTPEEKRNLEDLRNSGLSDIDFSLYLEQLCKP---------------LTPV 622 (806)
T ss_pred HHHhhHHHHhhhHHHHHHHhccCcccccccCHHHHHHHHHHHhCCCccCCHHHHHHHHhCC---------------CCCC
Q ss_pred C-HHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH----------------------------
Q 036757 201 N-EEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF---------------------------- 251 (385)
Q Consensus 201 ~-e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f---------------------------- 251 (385)
| +.+...|+.+...+.... -..+.+.....|.++-...+..+..-
T Consensus 623 dL~~~a~~L~~la~~~~~~~------~~~~L~~~a~~l~~~~~~~v~pl~~~~~~L~~~l~~L~~~~~~l~~~i~~ll~~ 696 (806)
T PF05478_consen 623 DLPSLANQLEALANSLPNGW------LRNALKNEAQNLRAIQKELVSPLEQLVSKLNQSLKKLDSLSSNLQNSINILLDA 696 (806)
T ss_pred CHHHHHHHHHHHHHhcCCCc------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Q ss_pred ------HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 252 ------FLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEK 289 (385)
Q Consensus 252 ------FL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~K 289 (385)
||..+.+.+..+..+.|++++..+..+|...=..+++.
T Consensus 697 v~~aq~fL~~~~~~ii~~~~~~~~~~~~~~~~qY~~~v~~~~~~ 740 (806)
T PF05478_consen 697 VQRAQDFLRNNGSEIINNESKNFTDRILGYFDQYIDWVISEITN 740 (806)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 120
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=29.85 E-value=4.6e+02 Score=26.88 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=38.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 91 IQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 91 Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
+...+..=..+..||.+...+-..|..+|.....-+..|..-..-+..++++
T Consensus 314 lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 314 LPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555777788888888888888887777777777777777777776
No 121
>PRK10884 SH3 domain-containing protein; Provisional
Probab=29.70 E-value=4.9e+02 Score=24.68 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETL----LSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~----L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
+..|..++.+....|+.+..- ...-+..+....+.|..|++++..+..++..
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433322 2333444444555555566666666655554
No 122
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=29.26 E-value=4.3e+02 Score=24.18 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHhhcCCChHHHHHHHHhhhHHhhhhhHHHH-HHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 036757 63 ANILSKGTTLREYTKGVENNLRQVELDSIQDY-IKESDNLV--SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIK 137 (385)
Q Consensus 63 ~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~y-i~~~~~l~--~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~ 137 (385)
++++.....+-.-.-.+-.+|+.+.......= +..-+++. -.++++...+.++..|.+.|..|+.--.+++....
T Consensus 18 ~~~~~~~~~~l~sl~nL~eqL~al~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l~~v~~~l~~~~~ 95 (168)
T PF15011_consen 18 DSALSRCLPLLSSLANLAEQLQALQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEELQKVRDSLSRQVR 95 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666666665544432 44444443 35677778888888888888888765555544433
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.17 E-value=6.4e+02 Score=28.52 Aligned_cols=48 Identities=13% Similarity=0.373 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHhhhh
Q 036757 99 DNLVSLHDQIRDC-DAILSQMETLL--------------SGFQAEIGSISSDIKILQEKSMDM 146 (385)
Q Consensus 99 ~~l~~L~~qI~~c-d~~L~~mE~~L--------------~~Fq~~L~~IS~eI~~LQe~S~~m 146 (385)
+.+++-++.+.+- ..+..+++.+| ..|..+|..++.+++.|+.+-..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~l 658 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQL 658 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 44455566665 455666666666666665543333
No 124
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=29.02 E-value=2.4e+02 Score=21.94 Aligned_cols=32 Identities=9% Similarity=0.195 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh
Q 036757 118 METLLSGFQAEIGSISSDIKILQEKSMDMGLK 149 (385)
Q Consensus 118 mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~k 149 (385)
+.+.|......|..++..+..|+.++.....+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444454444444444444
No 125
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=28.98 E-value=4e+02 Score=23.36 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHH
Q 036757 119 ETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155 (385)
Q Consensus 119 E~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~ 155 (385)
++-+..-+..+.........++.+.......++.-+.
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333443333
No 126
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=28.97 E-value=6.1e+02 Score=25.55 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=56.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------------------------HHHH
Q 036757 90 SIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS--------------------------------SDIK 137 (385)
Q Consensus 90 ~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS--------------------------------~eI~ 137 (385)
.-+++--.+..|.-|-.|+..|..-++.+|..|..+..+|.... +-.+
T Consensus 86 lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e 165 (307)
T PF10481_consen 86 LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYE 165 (307)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHH
Confidence 34555556677999999999999999999999999999997642 3456
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHh
Q 036757 138 ILQEKSMDMGLKLKNRKVAESKLAKF 163 (385)
Q Consensus 138 ~LQe~S~~m~~kL~NRk~~~~~L~~~ 163 (385)
.|+++ .+..+.-||.++.++..+
T Consensus 166 ~L~ek---ynkeveerkrle~e~k~l 188 (307)
T PF10481_consen 166 ELQEK---YNKEVEERKRLEAEVKAL 188 (307)
T ss_pred HHHHH---HHHHHHHHhhHHHHHHHH
Confidence 66774 777888899999888654
No 127
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.80 E-value=3e+02 Score=28.31 Aligned_cols=67 Identities=13% Similarity=0.313 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh--------hHHHHHHHHHHhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK--------NRKVAESKLAKFVED 166 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~--------NRk~~~~~L~~~V~~ 166 (385)
.+.++-..|.+...-+..|+..+..-...+..+.+.+..|+.+|.+.++++- +.+.+..-|..+|..
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg~e~~~k~~~~~l~~ii~e 219 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEGEEEEGKGPENFLEEIIPE 219 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----TT--HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCCccccccCHHHHHHHHHHH
Confidence 3555555566666666666666666666666677778888888888888772 334444555444443
No 128
>PRK11637 AmiB activator; Provisional
Probab=28.52 E-value=6.8e+02 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
+..+..++......+..++.-|..-+..|..+..+|..++.+-..+..++..
T Consensus 63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~ 114 (428)
T PRK11637 63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAK 114 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555554444444443
No 129
>PRK02224 chromosome segregation protein; Provisional
Probab=28.40 E-value=8.3e+02 Score=27.57 Aligned_cols=118 Identities=12% Similarity=0.191 Sum_probs=0.0
Q ss_pred hchHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 47 EGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQ 126 (385)
Q Consensus 47 ~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq 126 (385)
..+...|.... .-+.++-..-..+..-...+..++..+. +.+..+-.....+..+..++..-..-+...+..+..+.
T Consensus 202 ~~l~~~l~~~~--~~l~el~~~i~~~~~~~~~l~~~l~~l~-~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~ 278 (880)
T PRK02224 202 KDLHERLNGLE--SELAELDEEIERYEEQREQARETRDEAD-EVLEEHEERREELETLEAEIEDLRETIAETEREREELA 278 (880)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 127 AEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 127 ~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
..+......+..++.+-..+...+.........|..-.+++
T Consensus 279 ~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l 319 (880)
T PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL 319 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
No 130
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=28.12 E-value=1.8e+02 Score=24.41 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=12.8
Q ss_pred CcccccCHHHHHHHHHHHHHHHhhC
Q 036757 195 GAFIQVNEEYMRSLEILSKKLKFIG 219 (385)
Q Consensus 195 ~~~~~v~e~~i~~l~~L~~kl~~i~ 219 (385)
|.|+-.+ .-++...|.+++..++
T Consensus 78 ~~~ve~~--~~eA~~~l~~r~~~l~ 100 (129)
T cd00890 78 GVYVEKS--LEEAIEFLKKRLETLE 100 (129)
T ss_pred CEEEEec--HHHHHHHHHHHHHHHH
Confidence 4444333 3345666777777663
No 131
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.06 E-value=3.1e+02 Score=21.87 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 108 IRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 108 I~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
+......++.++..+..-+.++..+..++..+-.+.+.+....+
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~ 64 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVN 64 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666666666666666666666666665555544443
No 132
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=28.02 E-value=4.7e+02 Score=23.94 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhCCC--Cccc---hhhhhhhHHHHHHHHHHHHHHHhH
Q 036757 206 RSLEILSKKLKFIGVD--PMVK---TSKALKDVQPELEKLRQKAVSKVY 249 (385)
Q Consensus 206 ~~l~~L~~kl~~i~~~--~~~~---~~~A~~Dv~~~LekLr~kav~rir 249 (385)
++++.+...++.+... +..+ ....++.+....+++..++..+++
T Consensus 125 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~I~~~E~~~D~l~~~~~~~lf 173 (214)
T PF01865_consen 125 EAIEELVEAIEELKSILESSFEEKELIKEINKLEEEADKLYRRLIKKLF 173 (214)
T ss_dssp HHHHHHHHHHCCCCCCCCS-HCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555431 1222 222334444456666666666665
No 133
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=27.96 E-value=3.3e+02 Score=25.01 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--hhhhhhhHHHHHHHHHH
Q 036757 104 LHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMD--MGLKLKNRKVAESKLAK 162 (385)
Q Consensus 104 L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~--m~~kL~NRk~~~~~L~~ 162 (385)
+..+......+...+|++...++.+|..+..++..+..+-.. ....+.+|.+.+.....
T Consensus 35 i~~~~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~~~~~~~~~~d~~k~e~~~~~ 95 (170)
T COG2825 35 IFQESPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKK 95 (170)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHH
Confidence 333344446788899999999999999999999998887655 55566777777776655
No 134
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=27.87 E-value=30 Score=37.87 Aligned_cols=101 Identities=14% Similarity=0.268 Sum_probs=0.0
Q ss_pred cCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHhhh
Q 036757 68 KGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS--SDIKILQEKSMD 145 (385)
Q Consensus 68 ~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS--~eI~~LQe~S~~ 145 (385)
++..|.++...+...+..+.. .+.+.-.+|..|..+++..-..|......+..|..+-..++ ..|..|+.+-..
T Consensus 78 ~~~~L~~~~~~L~~~le~l~~----~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~ 153 (619)
T PF03999_consen 78 KSMPLKEQLPKLRPQLEELRK----EKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQR 153 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHH
Confidence 445666666666666665532 22223345666666666655555444444443434444444 344444444444
Q ss_pred hhhhhhhH----HHHHHHHHHhhhhhcCChH
Q 036757 146 MGLKLKNR----KVAESKLAKFVEDIIIPPR 172 (385)
Q Consensus 146 m~~kL~NR----k~~~~~L~~~V~~i~Ipp~ 172 (385)
+......| ..+...|..+...+-++|.
T Consensus 154 L~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~ 184 (619)
T PF03999_consen 154 LQEEKERRLEEVRELREEIISLMEELGIDPE 184 (619)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44444444 4456677788888888886
No 135
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.85 E-value=5.4e+02 Score=24.58 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~ 165 (385)
.++..|..+++.-....+.++..+..=+..+..+..+|..++.....+.--+. .....|..||.
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~---~m~~~L~~~v~ 119 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME---QMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 44677777888888888888888888888888888888888876555544333 34445555554
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.13 E-value=4.2e+02 Score=23.07 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
+..|..+|+..+..+..+...+......=...+.+|-.|-.++..+....+....++..+
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el 77 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQEL 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666665555544444444444444
No 137
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.00 E-value=6.1e+02 Score=25.48 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH----HHHHHHHH
Q 036757 87 ELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK----VAESKLAK 162 (385)
Q Consensus 87 e~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk----~~~~~L~~ 162 (385)
+...-.+.-.-..++..|..+-......|..+|.--..-..+|..+..+...|+++-...-...++-+ ....++..
T Consensus 38 ~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~s 117 (314)
T PF04111_consen 38 ESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDS 117 (314)
T ss_dssp ----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccC
Q 036757 163 FVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVN 201 (385)
Q Consensus 163 ~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~ 201 (385)
+-.++...-+.+..+...+.++--..| -|+|.|-+||
T Consensus 118 l~~q~~~~~~~L~~L~ktNv~n~~F~I--~hdG~fGTIN 154 (314)
T PF04111_consen 118 LKNQYEYASNQLDRLRKTNVYNDTFHI--WHDGPFGTIN 154 (314)
T ss_dssp HHHHHHHHHHHHHCHHT--TTTTT--E--EEETTEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCchhceeeE--eecCCeeeEC
No 138
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=26.94 E-value=6.5e+02 Score=25.15 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhh
Q 036757 131 SISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIV 178 (385)
Q Consensus 131 ~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~ 178 (385)
.++..+..|+.--..++.--+.|+.+...|..-+..-.|.|.++..--
T Consensus 187 ~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~~~~ddI~~~ll~~~~ 234 (342)
T cd08915 187 EVSEVVSSLRPLLNEVSELEKERERFISELEIKSRNNDILPKLITEYK 234 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHhh
Confidence 456778888888888888889999999999999999999999997763
No 139
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=26.92 E-value=4.7e+02 Score=29.24 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.2
Q ss_pred HHHHhhhhHH
Q 036757 366 LLMDTATSEY 375 (385)
Q Consensus 366 ~LiDnat~EY 375 (385)
-+++.+..+|
T Consensus 632 ~ll~~l~~~y 641 (726)
T PRK09841 632 QLLEWANDHY 641 (726)
T ss_pred HHHHHHHhcC
Confidence 3444444444
No 140
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=26.75 E-value=8.9e+02 Score=26.67 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh--h------------hhhhhhHHHHHHHHHHhhhhh
Q 036757 102 VSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMD--M------------GLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 102 ~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~--m------------~~kL~NRk~~~~~L~~~V~~i 167 (385)
.+.-+.|..+..-++-...|..-|..+|..|...|+.++..-.. . ..++.-.+.=.++.-||+++|
T Consensus 462 ~SIdkDi~tAnDGl~YynKM~elYK~~L~aVn~~Ik~ie~~~~~e~~kK~~~~~~~~~~~~q~~~~k~E~~KYLPFLnsi 541 (574)
T PF07462_consen 462 ASIDKDIATANDGLAYYNKMGELYKKHLDAVNEQIKEIEDEINDEEEKKIPSEPPKTAPKNQLNAKKEELEKYLPFLNSI 541 (574)
T ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhccCCcccccchhhhhHHHHHHhhhhhHHHHH
Confidence 45556677777888888999999999999999999988875332 1 112334445555666777765
Q ss_pred c
Q 036757 168 I 168 (385)
Q Consensus 168 ~ 168 (385)
-
T Consensus 542 q 542 (574)
T PF07462_consen 542 Q 542 (574)
T ss_pred H
Confidence 3
No 141
>PRK00736 hypothetical protein; Provisional
Probab=26.59 E-value=3.1e+02 Score=21.36 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
++++..|-..+---+..++.+-..+..-|..|..+...++.|.+|
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777788888888888888888888887777777777664
No 142
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=26.53 E-value=3.9e+02 Score=27.34 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
|.+.-|...+++-+.-|..++..|..=+.+|....+...-||.
T Consensus 175 D~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~Llqs 217 (323)
T PF08537_consen 175 DRVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQS 217 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888887777777777666666655555444443333
No 143
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.20 E-value=9.2e+02 Score=26.68 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=60.9
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHH-------HHH
Q 036757 89 DSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAES-------KLA 161 (385)
Q Consensus 89 ~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~-------~L~ 161 (385)
+-|..|-++...+. ..|+.....|..=|+-|-.|++.-.++.+.+..++.+-.++.+-|...+.=-. +-.
T Consensus 331 EeIe~~~ke~kdLk---Ekv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 331 EEIESFRKENKDLK---EKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667766655554 45555555777888888899999999999888888887777777765543222 334
Q ss_pred HhhhhhcCChHHHHHhhcC
Q 036757 162 KFVEDIIIPPRMVDIIVDG 180 (385)
Q Consensus 162 ~~V~~i~Ipp~lI~~I~~g 180 (385)
+..++-.+.|.+-+.|.+-
T Consensus 408 ~~~ddar~~pe~~d~i~~l 426 (654)
T KOG4809|consen 408 NIEDDARMNPEFADQIKQL 426 (654)
T ss_pred HhhHhhhcChhhHHHHHHH
Confidence 5566667777777766653
No 144
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.18 E-value=5.6e+02 Score=24.16 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=42.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 036757 90 SIQDYIKESDNLVSLHDQIRDCD--AILSQMETLLSGFQAEIGSISSDIKILQEKSMD 145 (385)
Q Consensus 90 ~Iq~yi~~~~~l~~L~~qI~~cd--~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~ 145 (385)
+...++.+.+.++..|.++.... .+..++..+..........+..++..++..=..
T Consensus 61 a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~ 118 (236)
T cd07651 61 SLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQD 118 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999999998863 456777777777777777777777777765333
No 145
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.56 E-value=6e+02 Score=24.33 Aligned_cols=76 Identities=5% Similarity=0.092 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc-CChHHHHHh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII-IPPRMVDII 177 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~-Ipp~lI~~I 177 (385)
..+..|...+..+...+..++..+..++..+-....++.....|...=-.... ......|+.+|. |=..+-+++
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~-----~~a~e~~~~~LLpVlDnLerAl 128 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIY-----SDACEDVLKELLPVLDNLERAA 128 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhHHhHHHHHH
Confidence 34667777777777778888888888888888888887777776443222222 223444555554 334444555
Q ss_pred hc
Q 036757 178 VD 179 (385)
Q Consensus 178 ~~ 179 (385)
..
T Consensus 129 ~~ 130 (211)
T PRK14160 129 AV 130 (211)
T ss_pred hc
Confidence 43
No 146
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=25.43 E-value=8.2e+02 Score=25.81 Aligned_cols=32 Identities=19% Similarity=0.437 Sum_probs=25.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHH--HHHHHHHHHH
Q 036757 90 SIQDYIKESDNLVSLHDQIRDC--DAILSQMETL 121 (385)
Q Consensus 90 ~Iq~yi~~~~~l~~L~~qI~~c--d~~L~~mE~~ 121 (385)
.-..+|.+++.+-.||..+++| +.+++++-++
T Consensus 74 aW~~~~teaerlS~lH~evKd~L~nd~~e~iktw 107 (472)
T KOG2856|consen 74 AWNAFMTEAERLSELHLEVKDNLINDDVEKIKTW 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3568999999999999999998 5566665543
No 147
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.35 E-value=4e+02 Score=21.87 Aligned_cols=61 Identities=16% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISS---DIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~---eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
+..|+.+-+.+...++.+-..-+.....+|.... +...|..+...+..+++.-..-...+.
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444444432 344444455555555544333333333
No 148
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=24.32 E-value=6.4e+02 Score=26.66 Aligned_cols=81 Identities=14% Similarity=0.245 Sum_probs=55.9
Q ss_pred hhhHHHHHHhhhhHHHHHHHHH----------------HH----------------HHHHHHHHHHHHHHHHHHHhHHHH
Q 036757 88 LDSIQDYIKESDNLVSLHDQIR----------------DC----------------DAILSQMETLLSGFQAEIGSISSD 135 (385)
Q Consensus 88 ~~~Iq~yi~~~~~l~~L~~qI~----------------~c----------------d~~L~~mE~~L~~Fq~~L~~IS~e 135 (385)
.+.+.+.+++.+.+++++=.=+ .+ .+-.+.||-.|..|-..+.++...
T Consensus 240 RDeLe~LLddd~Dma~mYLT~K~~~~~~~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEMLLEaYf~qiD~~~nk 319 (414)
T KOG2662|consen 240 RDELEELLDDDDDMAEMYLTRKLAQASSPESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEMLLEAYFMQIDSTLNK 319 (414)
T ss_pred HHHHHHHhcChHHHHHHHHhHHhhhccccccCCCCccccCCccchhhcccchhccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888875544 11 356788999999888887776555
Q ss_pred HHHHHHH----hhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 136 IKILQEK----SMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 136 I~~LQe~----S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
+..|.+- -.-++++|.|+|.-.-.|+=.+.--.
T Consensus 320 ~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT 356 (414)
T KOG2662|consen 320 LESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGT 356 (414)
T ss_pred HHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 5444332 12588999999988887776655433
No 149
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.26 E-value=7.5e+02 Score=24.99 Aligned_cols=89 Identities=18% Similarity=0.377 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 104 LHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGL--KLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 104 L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~--kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
|...++++..-|..=|..+..-...|+.++++- ++|.-++..- .||--|+=.+.|.++|+. |-..|.+.+
T Consensus 73 LkakLkes~~~l~dRetEI~eLksQL~RMrEDW--IEEECHRVEAQLALKEARkEIkQLkQvieT------mrssL~ekD 144 (305)
T PF15290_consen 73 LKAKLKESENRLHDRETEIDELKSQLARMREDW--IEEECHRVEAQLALKEARKEIKQLKQVIET------MRSSLAEKD 144 (305)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhhhchhh
Confidence 333344444333333333333344444443332 2333333333 344444444555555553 345556666
Q ss_pred CCCCCcchhhhcCCcccccC-HHHHHHHHHHHHHHHhh
Q 036757 182 NWNPFYPIILICGGAFIQVN-EEYMRSLEILSKKLKFI 218 (385)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~-e~~i~~l~~L~~kl~~i 218 (385)
-+ ..|.-.+.+=++||+.+
T Consensus 145 ------------------kGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 145 ------------------KGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred ------------------hhHHHHHhhhhhhHhHHHHH
Confidence 55 57777777777777764
No 150
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.75 E-value=7.4e+02 Score=24.73 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
+......+..+...|...|.-+..++.-+..+...+..|+.+|..|+..+.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666667777777777777777777777777777777777776554
No 151
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.73 E-value=5.4e+02 Score=23.18 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHhhhhh-cCChHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSM----DMGLKLKNRKVAESKLAKFVEDI-IIPPRM 173 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~----~m~~kL~NRk~~~~~L~~~V~~i-~Ipp~l 173 (385)
.++..+-.||...+..|..+..- ..+...+..+|..||.+.. ....++.+++. ...|...+... .--|..
T Consensus 27 ~e~~~~k~ql~~~d~~i~~Lk~~----~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~-~~ai~~al~~akakn~~a 101 (155)
T PF06810_consen 27 EERDNLKTQLKEADKQIKDLKKS----AKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKK-DSAIKSALKGAKAKNPKA 101 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCHHH
Confidence 45666666777777766665551 3478888889999998777 44445544332 33444444332 245677
Q ss_pred HHHhhcCC
Q 036757 174 VDIIVDGE 181 (385)
Q Consensus 174 I~~I~~g~ 181 (385)
|..+++-+
T Consensus 102 v~allD~d 109 (155)
T PF06810_consen 102 VKALLDLD 109 (155)
T ss_pred HHHhcCHH
Confidence 77777655
No 152
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.54 E-value=1.8e+02 Score=26.08 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 115 LSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 115 L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
|..+-..|.-|+..+..++.+|..|+.
T Consensus 5 lq~~~~~l~~~~~qie~L~~si~~L~~ 31 (144)
T PRK14011 5 LQNQFMALEVYNQQVQKLQEELSSIDM 31 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666666555
No 153
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.54 E-value=8.3e+02 Score=29.68 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred CCCccccCc-ccccCcccccccCCCCChhchHHHHHhhhCh-HHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHh
Q 036757 20 PKNVFDLGA-FVGDLTFEEDASGDDISLEGLEQELEECKNH-DVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKE 97 (385)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~l~~~l~~~~~~-~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~ 97 (385)
++-.+++.+ -..||--+...+-++++++.|-+.++.+-+. +.+...-..=..|..+......=.+..-....+.|+..
T Consensus 195 P~Ls~~~~~~~l~~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~ 274 (1353)
T TIGR02680 195 PQLSKKPDEGVLSDALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSA 274 (1353)
T ss_pred CCCCCCCChHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh--------hhhhhHHHHHHHHHHhhhh
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMG--------LKLKNRKVAESKLAKFVED 166 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~--------~kL~NRk~~~~~L~~~V~~ 166 (385)
...+..+..++..+...++..+.-+..-+.++..+..++..++.+-..+. .++.+-+.-...+..-..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~ 351 (1353)
T TIGR02680 275 QTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAAD 351 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.41 E-value=3.4e+02 Score=20.70 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 036757 116 SQMETLLSGFQAEIGSISSDIKILQEKSMDMGL 148 (385)
Q Consensus 116 ~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~ 148 (385)
+.+|.-+.+....++++.++++.|.+.-..|..
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655555555555555555555554444433
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.34 E-value=7.2e+02 Score=24.44 Aligned_cols=79 Identities=13% Similarity=0.246 Sum_probs=37.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH----HHHHHHHHhhhhhc
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK----VAESKLAKFVEDII 168 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk----~~~~~L~~~V~~i~ 168 (385)
.|+.=.....++...+++....-..+-..|..-+..+..+...++.|......++.+++-+- .+..++..+-..+-
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 34433333333333333333333333344445555566666666666665555555555433 34444555444444
Q ss_pred CCh
Q 036757 169 IPP 171 (385)
Q Consensus 169 Ipp 171 (385)
+|.
T Consensus 209 l~e 211 (290)
T COG4026 209 LPE 211 (290)
T ss_pred chH
Confidence 444
No 156
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.27 E-value=3.3e+02 Score=22.52 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.4
Q ss_pred HHHhhhHHh
Q 036757 78 GVENNLRQV 86 (385)
Q Consensus 78 ~ve~eL~~l 86 (385)
.+.++|..+
T Consensus 34 ~v~~EL~~l 42 (105)
T cd00632 34 KALEELEKL 42 (105)
T ss_pred HHHHHHHcC
Confidence 444455544
No 157
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.11 E-value=3.5e+02 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.336 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHH
Q 036757 122 LSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKV 155 (385)
Q Consensus 122 L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~ 155 (385)
...-..|...+..++...++.-.+-+.||.|+-.
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~ 52 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAARANQRLDNIAQ 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3334567778888888888888899999988643
No 158
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=22.90 E-value=8e+02 Score=24.79 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH--------hHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQ----------AEIG--------SISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq----------~~L~--------~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
..+..+...+.....+|..=...|..|- +-|. +++..|..|++--..++.--..|..+.+.|
T Consensus 145 ~~l~~~~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~L 224 (356)
T cd09237 145 EKLFSLVDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDL 224 (356)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666633333344443 2221 378889999998889999999999999999
Q ss_pred HHhhhhhcCChHHHHHh
Q 036757 161 AKFVEDIIIPPRMVDII 177 (385)
Q Consensus 161 ~~~V~~i~Ipp~lI~~I 177 (385)
..-+..-.|.|.++..-
T Consensus 225 k~k~~~DDI~~~ll~~~ 241 (356)
T cd09237 225 KQKIHNDDISDILILNS 241 (356)
T ss_pred HHHHhccchHHHHHHhc
Confidence 99999999999998654
No 159
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=22.88 E-value=4.2e+02 Score=23.51 Aligned_cols=68 Identities=16% Similarity=0.360 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMV 174 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI 174 (385)
.....+.|..|..+...-+.-|..-...|..+++++..|+.. -+++|=...+....+|-.|.=-|.+|
T Consensus 41 ~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~------~l~rRPLtk~dVeeLV~~IseQPK~I 108 (126)
T PF07028_consen 41 QKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKE------YLERRPLTKEDVEELVLRISEQPKFI 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcCCCCHHHHHHHHHHHHhCcHHH
Confidence 345556777888888887777777888888888888888774 56667666777777776665555554
No 160
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.78 E-value=5.4e+02 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
.+.+..|..+++.-...+++.+..|..|+........+++...++
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355777777777777778888877777777777766666666553
No 161
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=22.76 E-value=1.3e+03 Score=27.07 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcchhhhcCCcccccC-HHHHHHHHHHHHHHHhh
Q 036757 153 RKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVN-EEYMRSLEILSKKLKFI 218 (385)
Q Consensus 153 Rk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~-e~~i~~l~~L~~kl~~i 218 (385)
.+.++.++.+|=+++..-.+.+..+.+.. .+ .+-++.+.+|.....++
T Consensus 196 n~~le~k~~k~~e~~~~nD~~sle~~~~q------------------~~tq~vl~ev~QLss~~q~l 244 (1265)
T KOG0976|consen 196 KKALEEKLEKFKEDLIEKDQKSLELHKDQ------------------ENTQKVLKEVMQLSSQKQTL 244 (1265)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHH------------------HHHHHHHHHHHHHHHhHhhh
Confidence 45677777888888877777776666665 55 45666677777776665
No 162
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=22.75 E-value=4.1e+02 Score=27.78 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 036757 202 EEYMRSLEILSKKLKF 217 (385)
Q Consensus 202 e~~i~~l~~L~~kl~~ 217 (385)
+.|+..|+.|+..+-.
T Consensus 297 ~~Wi~~L~~lE~~vv~ 312 (379)
T PF04518_consen 297 DDWIPTLQILESFVVS 312 (379)
T ss_pred hhHHHHHHHHHHHHHc
Confidence 6999999999998876
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.75 E-value=1e+03 Score=26.08 Aligned_cols=6 Identities=33% Similarity=0.601 Sum_probs=2.5
Q ss_pred cHHHHH
Q 036757 329 DRINIL 334 (385)
Q Consensus 329 ~R~~iL 334 (385)
.|.+++
T Consensus 591 ~r~~l~ 596 (650)
T TIGR03185 591 HRENLV 596 (650)
T ss_pred HHHHHH
Confidence 444443
No 164
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.74 E-value=4.2e+02 Score=24.42 Aligned_cols=49 Identities=8% Similarity=0.227 Sum_probs=35.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
.-++.-..-..+|..|......+..++..+..+...|.....+|..+-.
T Consensus 16 ~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~ 64 (188)
T PF10018_consen 16 SALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPD 64 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556677777777778888888888888888888888877763
No 165
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.53 E-value=1e+03 Score=26.60 Aligned_cols=53 Identities=11% Similarity=0.266 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
..+....+.|..|...++.++.-.+.-+..|.....+|..|..+-..+.-+..
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777666555444433
No 166
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.51 E-value=2.6e+02 Score=27.38 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=53.8
Q ss_pred hcCChHHHHHhhcCCCCCCCcchhhhcCCcccccCHHHHHHHHHHHHHHHh-hCCC-----Ccc-chhhhhhhHHHHHHH
Q 036757 167 IIIPPRMVDIIVDGENWNPFYPIILICGGAFIQVNEEYMRSLEILSKKLKF-IGVD-----PMV-KTSKALKDVQPELEK 239 (385)
Q Consensus 167 i~Ipp~lI~~I~~g~~~~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~-i~~~-----~~~-~~~~A~~Dv~~~Lek 239 (385)
-.+||+-+-++-.-.. +|++.++-.+.|.++.+. +... .++ -....+.++..+|++
T Consensus 30 ~~lpp~~laslGsKri-----------------~dp~~L~~f~~lk~~A~r~~~~~G~rFlgG~aVP~~~~~~l~~~L~~ 92 (257)
T PF11348_consen 30 DELPPEDLASLGSKRI-----------------CDPDALKPFSKLKKRAERLCLKVGVRFLGGYAVPEDKAEELAEELED 92 (257)
T ss_pred ccCCHHHHHhcCceee-----------------eChHHcCHHHHHHHHHHHHHHHcCCcccceeEcCHHHHHHHHHHHHH
Confidence 3578887766554441 677777776666666554 2110 111 112335677788999
Q ss_pred HHHHHHHHhHHH----------HHhhcCHHHHHHHHHHH
Q 036757 240 LRQKAVSKVYYF----------FLKGHGKEIYNEVRAAY 268 (385)
Q Consensus 240 Lr~kav~rir~f----------FL~~~~~~~a~El~~aY 268 (385)
++..+.....+| |..+| |+.+.-||++.
T Consensus 93 i~~eF~~~k~~Fl~~Yd~~i~~w~~~~-pew~~~Ir~~~ 130 (257)
T PF11348_consen 93 IKTEFEQEKQDFLANYDQAIEEWIDRH-PEWADIIRRAA 130 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-hHHHHHHHhcC
Confidence 999998888887 88875 88887777643
No 167
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=21.75 E-value=3.7e+02 Score=25.50 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKS 143 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S 143 (385)
+.-....+.++.....|-.|..-|..+..-|+++|.++..|..|-
T Consensus 142 ~~q~~~~ks~~~tq~~l~N~~~QLe~~~~vl~smS~~L~~L~~Rq 186 (190)
T PF09074_consen 142 DRQQKIMKSFDCTQEMLFNVSCQLEDMNEVLGSMSKDLQNLSDRQ 186 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445566677777788888888888888888899999998877653
No 168
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.27 E-value=3.2e+02 Score=24.69 Aligned_cols=47 Identities=11% Similarity=0.107 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMD 145 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~ 145 (385)
++...|+.+|..-...|..+-.-=.-=+.-+..++.||..|+.+-..
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e 107 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDE 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888777765322222234477788899988885433
No 169
>PF09074 Mer2: Mer2; InterPro: IPR015159 Meiotic recombination 2 protein (Mer2) also known as Rec107, forms part of a complex that is required for meiotic double strand DNA break formation. Mer2 increases in abundance and is phosphorylated during the prophase phase of cell division []. MER2 is not required for mitosis and mitotic DNA repair mechanisms and is a component of the MER2-MEI4-REC114 complex which seems to be required for meiotic double-strand break (DSB) formation []. ; GO: 0007131 reciprocal meiotic recombination, 0000794 condensed nuclear chromosome
Probab=21.16 E-value=7.1e+02 Score=23.59 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=21.3
Q ss_pred ChhchHHHHHhhhChHHHHHHhhcCCChHHHHHHHHhhhH
Q 036757 45 SLEGLEQELEECKNHDVVANILSKGTTLREYTKGVENNLR 84 (385)
Q Consensus 45 ~~~~l~~~l~~~~~~~~v~~~L~~g~dLr~ys~~ve~eL~ 84 (385)
.+++-|+.|-+++.-=.+ -.+|||+=+..+..=|.
T Consensus 20 ~l~EADkQILeWAgKLEL-----ESidLrEks~~L~~lL~ 54 (190)
T PF09074_consen 20 QLDEADKQILEWAGKLEL-----ESIDLREKSSKLINLLN 54 (190)
T ss_pred ccchHHHHHHHHHHHhhh-----hhhhhhhhHHHHHHHHH
Confidence 677777777776642111 35788887666555443
No 170
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.84 E-value=9.6e+02 Score=28.61 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhh
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~ 165 (385)
+..|...|......+..+-.-|...+.+|+.+-++|..++-+...+..++.||..-...|..=++
T Consensus 685 i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n 749 (1141)
T KOG0018|consen 685 IHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMN 749 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555666666666666666666666666666666666655555554444
No 171
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=20.66 E-value=1.5e+03 Score=26.99 Aligned_cols=29 Identities=21% Similarity=0.404 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCccchhhhhhhHHH
Q 036757 203 EYMRSLEILSKKLKFIGVDPMVKTSKALKDVQP 235 (385)
Q Consensus 203 ~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~ 235 (385)
+|-..+..+..++..+.. -+..|..+...
T Consensus 946 ~~~~~i~~le~~i~~lg~----VN~~Aiee~e~ 974 (1163)
T COG1196 946 ELEREIERLEEEIEALGP----VNLRAIEEYEE 974 (1163)
T ss_pred HHHHHHHHHHHHHHhccC----CChhHHHHHHH
Confidence 567778888888776632 12455554443
No 172
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.53 E-value=1.4e+03 Score=26.66 Aligned_cols=102 Identities=18% Similarity=0.149 Sum_probs=70.6
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 036757 60 DVVANILSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKIL 139 (385)
Q Consensus 60 ~~v~~~L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~L 139 (385)
-+++.++.+..+...-++-.++.+..++. .++.|-. -+.++..++..|......|+..-...+..++.--++..+|
T Consensus 629 ~~i~k~ls~~~eee~~~~~~~k~~e~l~~-~~~kyK~---lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql 704 (970)
T KOG0946|consen 629 GLIAKLLSSKTEEEEQTQLAEKYHEELDD-IQQKYKG---LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQL 704 (970)
T ss_pred HHHHHHhcCCCccchhhHHHHHHHHHHHH-HHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888877777777775442 3344433 3667777888888777777777777777888778888888
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHhhh
Q 036757 140 QEKSMDMGLKLKNRKVAESKLAKFVE 165 (385)
Q Consensus 140 Qe~S~~m~~kL~NRk~~~~~L~~~V~ 165 (385)
.++-..+..+|.|-..-...+.+-.+
T Consensus 705 ~~q~~~Lk~qLg~~~~~~~~~~q~~e 730 (970)
T KOG0946|consen 705 KDQLDLLKNQLGIISSKQRDLLQGAE 730 (970)
T ss_pred HHHHHHHHHHhcccccchhhHHhHHH
Confidence 88888888888754443333433333
No 173
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.42 E-value=1.1e+03 Score=25.63 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHhhhhhcCChH
Q 036757 100 NLVSLHDQIRDCDAILSQMETLL---SGFQAEIGSISSDIKILQ----EKSMDMGLKLKNRKVAESKLAKFVEDIIIPPR 172 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L---~~Fq~~L~~IS~eI~~LQ----e~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~ 172 (385)
+...||.||+.-+..-+++|.|- ..-..+|..|..++..|- ++-....-..+.-.+....+..++..|.+.|.
T Consensus 352 ~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~ 431 (622)
T COG5185 352 NIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS 431 (622)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 35667777777666666666665 455677887766665553 33333333444444555577788999999998
Q ss_pred HHHHhhcCCCC--CCCcchhhhcCCcccccCHHHHHHHHHHHHHHHh
Q 036757 173 MVDIIVDGENW--NPFYPIILICGGAFIQVNEEYMRSLEILSKKLKF 217 (385)
Q Consensus 173 lI~~I~~g~~~--~~~~~~~~~~~~~~~~v~e~~i~~l~~L~~kl~~ 217 (385)
.|..=.+|-+. +|++|- .-|-|+++.-.+.+.+|..++.-
T Consensus 432 ~i~~~~nd~~l~iN~E~~~-----~~~sg~~~~I~~~i~eln~~i~~ 473 (622)
T COG5185 432 QIGHNVNDSSLKINIEQLF-----PKGSGINESIKKSILELNDEIQE 473 (622)
T ss_pred HHhhcCCCCceeeccccCC-----ccccCchHhHHHHHHHHhHHHHH
Confidence 77776666544 455443 22344667777778888877764
No 174
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=20.28 E-value=6.7e+02 Score=22.90 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=51.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--hhhhhhhhhhHHHHHHHHHHhhhh
Q 036757 91 IQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK--SMDMGLKLKNRKVAESKLAKFVED 166 (385)
Q Consensus 91 Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~--S~~m~~kL~NRk~~~~~L~~~V~~ 166 (385)
|..+++++. ....+.|+.+...-...+.....|+..|...+.+-..+..+ ..-...-...|+.++..|...+++
T Consensus 35 I~~iLe~R~--~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~ 110 (155)
T PRK06569 35 AEEIFNNRQ--TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQ 110 (155)
T ss_pred HHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 23455777888888888888889999999998888888554 344455566778888877766543
No 175
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.24 E-value=4.3e+02 Score=29.02 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCCh
Q 036757 123 SGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPP 171 (385)
Q Consensus 123 ~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp 171 (385)
.....++..+.+++..++++-..+..+++.-+...+.|.++- ++.+|.
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~~~~-~ld~~l 136 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG-NFDLDL 136 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-cCCCCH
Confidence 344455666666666666666666666666666666666642 244443
No 176
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.20 E-value=1e+03 Score=25.07 Aligned_cols=90 Identities=21% Similarity=0.254 Sum_probs=57.3
Q ss_pred hHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhhhhhh
Q 036757 72 LREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMET---LLSGFQAEIGSISSDIKILQEKSMDMGL 148 (385)
Q Consensus 72 Lr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~---~L~~Fq~~L~~IS~eI~~LQe~S~~m~~ 148 (385)
+.++...++..+..+.. .++........+...+.++..+-..|..++. -|+.....+..+-+.+..+.++-.
T Consensus 279 ~~~~i~~l~~~l~~l~~-~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~~~---- 353 (503)
T KOG2273|consen 279 KKEKIDKLEQQLKKLSK-QVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEKLT---- 353 (503)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 34445555555555333 3334666677788888888888777777777 677777777777777777766543
Q ss_pred hhhhHHHHHHHHHHhhhh
Q 036757 149 KLKNRKVAESKLAKFVED 166 (385)
Q Consensus 149 kL~NRk~~~~~L~~~V~~ 166 (385)
-.+....+...+..|+..
T Consensus 354 ~~~~~~~~~~~l~~~i~~ 371 (503)
T KOG2273|consen 354 AEKDSKKLAEQLREYIRY 371 (503)
T ss_pred hhhhHHHhHHHHHHHHHH
Confidence 334445555566666665
No 177
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=20.12 E-value=6.9e+02 Score=23.03 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhHHH---HHHHHHHHhhhhhhhhhhHHHHHHHHHH-hhhhhcCChHHH
Q 036757 117 QMETLLSGFQAEIGSISS---DIKILQEKSMDMGLKLKNRKVAESKLAK-FVEDIIIPPRMV 174 (385)
Q Consensus 117 ~mE~~L~~Fq~~L~~IS~---eI~~LQe~S~~m~~kL~NRk~~~~~L~~-~V~~i~Ipp~lI 174 (385)
++-..|..++..|+++.+ .|+.+-.+...+ .+-|.| |++.+.+|..+=
T Consensus 34 ~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL----------~~YLDP~~~e~~~l~~~~K 85 (174)
T PF07426_consen 34 KVIDSLLSVQSALNSAASKRERIKELFKRIEEL----------NKYLDPNFIEEIQLPDSAK 85 (174)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH----------HHHcCchhhhhcccchHHH
Confidence 345567788888888743 344333332222 223333 777788887653
No 178
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.08 E-value=1.3e+03 Score=26.37 Aligned_cols=9 Identities=11% Similarity=0.209 Sum_probs=4.9
Q ss_pred ccCcccHHH
Q 036757 324 VFALGDRIN 332 (385)
Q Consensus 324 ~FsLg~R~~ 332 (385)
.+|-|.|.-
T Consensus 1074 ~lSgge~~~ 1082 (1164)
T TIGR02169 1074 AMSGGEKSL 1082 (1164)
T ss_pred hcCcchHHH
Confidence 455566653
No 179
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.07 E-value=1.1e+03 Score=25.48 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 114 ILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 114 ~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
-+..+.+.|......-..+..++..+++.-.--...+.+.+.+.+.|..+-... +.+...|.++.
T Consensus 307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~---~~~~~~i~~~~ 371 (560)
T PF06160_consen 307 NLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRY---EDLEERIEEQQ 371 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH---HHHHHHHHcCC
Confidence 344455555555555555566666666655444456667777777777776666 55666677766
Done!