Query 036757
Match_columns 385
No_of_seqs 160 out of 257
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m1j_C Fibrinogen gamma chain; 82.5 12 0.00041 37.7 12.2 79 76-155 33-126 (409)
2 4hpq_C ATG17, KLTH0D15642P; au 78.1 54 0.0019 33.0 15.3 92 89-181 119-227 (413)
3 1i4d_A Arfaptin 2, partner of 76.4 48 0.0016 30.6 15.8 160 99-289 24-205 (224)
4 3hnw_A Uncharacterized protein 73.8 38 0.0013 28.9 11.1 62 90-151 66-127 (138)
5 1vcs_A Vesicle transport throu 63.8 20 0.00068 28.9 6.9 23 100-122 39-61 (102)
6 2p22_C Protein SRN2; endosome, 62.9 56 0.0019 29.4 10.4 30 151-180 124-154 (192)
7 3ghg_A Fibrinogen alpha chain; 60.3 24 0.00082 36.6 8.2 106 66-181 56-164 (562)
8 2p22_A Suppressor protein STP2 60.2 94 0.0032 27.6 11.4 25 117-141 60-84 (174)
9 3ghg_C Fibrinogen gamma chain; 56.2 1.7E+02 0.0057 29.4 13.5 34 118-151 89-122 (411)
10 1t7s_A BAG-1 cochaperone; stru 55.7 11 0.00038 32.5 4.1 76 54-129 48-135 (137)
11 4ev6_A Magnesium transport pro 53.7 91 0.0031 29.7 10.9 31 151-181 272-302 (339)
12 4emc_A Monopolin complex subun 52.4 31 0.001 31.2 6.6 71 106-179 13-83 (190)
13 3oja_A Leucine-rich immune mol 50.3 48 0.0016 32.9 8.5 58 101-158 409-466 (487)
14 2iub_A CORA, divalent cation t 48.2 92 0.0031 30.0 10.0 33 149-181 294-326 (363)
15 3na7_A HP0958; flagellar bioge 48.0 1.7E+02 0.0057 26.9 14.5 19 192-210 200-218 (256)
16 3ghg_A Fibrinogen alpha chain; 45.6 86 0.0029 32.6 9.4 103 68-174 79-199 (562)
17 1i6z_A BAG-family molecular ch 44.5 21 0.00071 30.7 4.0 78 55-142 50-129 (135)
18 2v71_A Nuclear distribution pr 43.0 1.9E+02 0.0064 26.0 14.1 53 115-167 90-146 (189)
19 1m1j_B Fibrinogen beta chain; 43.0 2.9E+02 0.0098 28.2 13.0 35 103-137 125-159 (464)
20 2xz3_A Maltose ABC transporter 42.0 79 0.0027 31.1 8.6 45 116-160 375-420 (463)
21 4gkw_A Spindle assembly abnorm 41.8 1.3E+02 0.0046 25.7 8.6 79 101-179 34-119 (167)
22 1m1j_B Fibrinogen beta chain; 41.3 3E+02 0.01 28.0 13.1 53 101-153 130-187 (464)
23 1fxk_C Protein (prefoldin); ar 41.1 1.2E+02 0.0041 24.8 8.4 100 115-244 3-118 (133)
24 2qyw_A Vesicle transport throu 38.8 1.5E+02 0.0051 23.7 8.8 24 99-122 49-72 (102)
25 1deq_A Fibrinogen (alpha chain 38.3 2.3E+02 0.008 28.2 11.0 20 68-87 61-80 (390)
26 3hnw_A Uncharacterized protein 36.4 1.7E+02 0.0057 24.8 8.6 38 115-152 98-135 (138)
27 2dfs_A Myosin-5A; myosin-V, in 35.7 3.1E+02 0.01 30.8 12.8 58 110-167 981-1042(1080)
28 3pe0_A Plectin; cytoskeleton, 34.7 2.8E+02 0.0095 25.8 10.7 24 123-146 160-183 (283)
29 3onj_A T-snare VTI1; helix, HA 33.4 1.8E+02 0.006 23.0 9.3 25 100-124 35-59 (97)
30 3mq9_A Bone marrow stromal ant 33.4 3.5E+02 0.012 26.4 14.5 98 60-160 359-469 (471)
31 2w6a_A ARF GTPase-activating p 33.0 1.5E+02 0.0051 22.0 7.6 42 105-146 19-60 (63)
32 2no2_A HIP-I, huntingtin-inter 32.9 2E+02 0.0067 23.4 10.6 73 70-142 25-97 (107)
33 2c5k_T Syntaxin TLG1, T-snare 32.5 1.9E+02 0.0064 23.0 7.8 49 116-167 39-87 (95)
34 3ghg_B Fibrinogen beta chain; 32.3 2.8E+02 0.0096 28.3 10.7 29 132-160 161-189 (461)
35 3swf_A CGMP-gated cation chann 31.7 1.4E+02 0.0046 23.1 6.4 44 113-163 7-51 (74)
36 2w6b_A RHO guanine nucleotide 31.7 85 0.0029 22.9 4.9 36 132-167 15-50 (56)
37 3ghg_C Fibrinogen gamma chain; 31.3 1.7E+02 0.0057 29.4 8.9 61 88-151 76-136 (411)
38 3nr7_A DNA-binding protein H-N 30.4 1.9E+02 0.0066 22.6 7.3 75 91-174 4-78 (86)
39 3vkg_A Dynein heavy chain, cyt 29.7 2.1E+02 0.007 36.2 10.8 54 101-154 2023-2076(3245)
40 1deq_A Fibrinogen (alpha chain 29.7 4.3E+02 0.015 26.3 12.1 101 67-171 81-199 (390)
41 3a7o_A Autophagy protein 16; c 29.4 1.9E+02 0.0066 22.1 7.9 53 100-152 19-71 (75)
42 3fb2_A Spectrin alpha chain, b 29.0 2.2E+02 0.0075 24.6 8.5 59 101-161 121-179 (218)
43 1jcd_A Major outer membrane li 28.2 1.7E+02 0.0057 21.0 6.7 46 100-152 5-50 (52)
44 1avo_B 11S regulator; proteaso 27.9 2.8E+02 0.0095 23.6 8.6 77 202-291 52-136 (140)
45 2v71_A Nuclear distribution pr 27.2 3.4E+02 0.012 24.3 13.4 47 93-139 35-82 (189)
46 1hx1_B BAG-1, BAG-family molec 26.4 40 0.0014 28.1 2.8 72 46-117 27-108 (114)
47 3s4r_A Vimentin; alpha-helix, 26.3 1.5E+02 0.0051 23.4 6.1 44 243-289 20-63 (93)
48 3r6n_A Desmoplakin; spectrin r 25.7 3.5E+02 0.012 27.1 10.3 120 47-168 136-269 (450)
49 3r84_A Mediator of RNA polymer 25.5 2.5E+02 0.0085 22.1 8.3 43 99-141 15-72 (86)
50 3a7p_A Autophagy protein 16; c 24.6 3.5E+02 0.012 23.5 10.5 54 98-151 67-120 (152)
51 2w83_C C-JUN-amino-terminal ki 24.0 2.5E+02 0.0086 21.7 8.3 56 91-150 11-67 (77)
52 1gl2_D Syntaxin 8, vesicle tra 22.9 1.4E+02 0.0046 21.6 5.0 44 99-142 9-52 (65)
53 1x79_B RAB GTPase binding effe 21.9 3.4E+02 0.012 22.4 7.9 50 98-150 44-93 (112)
54 1sfc_A VAMP 2, protein (synapt 21.8 3E+02 0.01 21.7 8.0 46 98-151 29-75 (96)
55 1l4a_A Synaptobrevin; snare, s 21.5 2.6E+02 0.009 21.1 6.6 47 98-152 14-61 (80)
56 1n7s_D SNAP-25A; neuronal snar 21.2 2.1E+02 0.0072 20.6 5.7 35 127-161 10-44 (66)
57 3t97_C Nuclear pore glycoprote 21.2 2.3E+02 0.008 21.0 5.9 40 93-132 6-48 (64)
58 3ol1_A Vimentin; structural ge 21.0 3.4E+02 0.012 22.1 8.3 44 98-141 68-115 (119)
59 1lwu_C Fibrinogen gamma chain; 20.7 2.5E+02 0.0085 27.2 7.7 38 104-141 17-54 (323)
60 1ic2_A Tropomyosin alpha chain 20.5 2.8E+02 0.0096 20.9 8.0 52 100-151 21-72 (81)
61 2lf0_A Uncharacterized protein 20.3 1.6E+02 0.0053 24.8 5.2 44 99-142 10-58 (123)
62 2bid_A Protein (BID); programm 20.2 4.1E+02 0.014 23.9 8.3 30 256-289 164-193 (197)
No 1
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=82.48 E-value=12 Score=37.68 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=49.2
Q ss_pred HHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 036757 76 TKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDC---------------DAILSQMETLLSGFQAEIGSISSDIKILQ 140 (385)
Q Consensus 76 s~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~c---------------d~~L~~mE~~L~~Fq~~L~~IS~eI~~LQ 140 (385)
-+.|.++|+.|| ..++..-.....+..|.+.|+.| ......|.+.+..++..+......|..||
T Consensus 33 e~~V~~~l~~LE-~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~ 111 (409)
T 1m1j_C 33 RLTTDGELLEIE-GLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLT 111 (409)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334445555552 23334444444455555556555 44566777778888888888888888888
Q ss_pred HHhhhhhhhhhhHHH
Q 036757 141 EKSMDMGLKLKNRKV 155 (385)
Q Consensus 141 e~S~~m~~kL~NRk~ 155 (385)
++-..++.++.+-+.
T Consensus 112 ~~~~~~~~~i~~l~~ 126 (409)
T 1m1j_C 112 DMHIMNSNKITQLKQ 126 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHH
Confidence 887777666664433
No 2
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=78.08 E-value=54 Score=32.96 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHH-----HHHHHhHHHHHHHHH-----HHhhhhhhhhh
Q 036757 89 DSIQDYIKESDNLVSLHDQIRDC-------DAILSQMETLLSGF-----QAEIGSISSDIKILQ-----EKSMDMGLKLK 151 (385)
Q Consensus 89 ~~Iq~yi~~~~~l~~L~~qI~~c-------d~~L~~mE~~L~~F-----q~~L~~IS~eI~~LQ-----e~S~~m~~kL~ 151 (385)
.+.-||+.+ +++..|.+-|++| +++..+.+.++.+| +++|..+..++...- +.+...+.-++
T Consensus 119 k~L~DFIs~-~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~~l~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ll~ 197 (413)
T 4hpq_C 119 SKLGDFISR-DSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQLVESRMKGLRDEFSSKFGDQCRENLKLNEEFTN 197 (413)
T ss_dssp CTTTTSSCC-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHH
T ss_pred CcHHHHcCH-hhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCCCCccccchhhhhhH
Confidence 455566665 6666777777777 45666777777777 555555555553211 11111233566
Q ss_pred hHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 152 NRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 152 NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
-...++..|..+++.++===+.+..+.+.+
T Consensus 198 el~~le~elA~~L~SLT~HyDqC~~l~~~~ 227 (413)
T 4hpq_C 198 EADQLEQELADFLKSFTDHFDKCSALSSRS 227 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677888888888888776666666666655
No 3
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=76.40 E-value=48 Score=30.63 Aligned_cols=160 Identities=16% Similarity=0.197 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHh
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKIL-QEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDII 177 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~L-Qe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I 177 (385)
..+..+-..+...--.|.+-+.-|..|=.+|+.-+.+.... ..=+.....--+|+..+...|.+|+.++. ++
T Consensus 24 ~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~g~~Ll~~L~~f~s~l~-------T~ 96 (224)
T 1i4d_A 24 ESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSIN-------TL 96 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HH
Confidence 33555555555555666666666666666665543221111 11122334445788999999999999874 23
Q ss_pred hcCCCCCCCcchhhhcCCcccccCH-------------HHHHHHHHHHHHHHhhCCC-----C--ccchh-hhhhhHHHH
Q 036757 178 VDGENWNPFYPIILICGGAFIQVNE-------------EYMRSLEILSKKLKFIGVD-----P--MVKTS-KALKDVQPE 236 (385)
Q Consensus 178 ~~g~~~~~~~~~~~~~~~~~~~v~e-------------~~i~~l~~L~~kl~~i~~~-----~--~~~~~-~A~~Dv~~~ 236 (385)
++.- |.+ +|...+..+ +..+.. | .+..+ ..+++-+..
T Consensus 97 ~~ka------------------I~DT~lTIk~ye~aR~EY~ay~~~~----ee~~~~~~~~~~l~rve~~q~~~~~ak~k 154 (224)
T 1i4d_A 97 VTKT------------------MEDTLMTVKQYEAARLEYDAYRTDL----EELSLGPRDAGTRGRLESAQATFQAHRDK 154 (224)
T ss_dssp HHTH------------------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHC------------CHHHHHHHHHHHH
T ss_pred HhHh------------------ccHHHHHHHHHHHHhHhHHHHHhhH----HHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3222 222 233332222 222111 1 11111 123444567
Q ss_pred HHHHHHHHHHHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 237 LEKLRQKAVSKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEK 289 (385)
Q Consensus 237 LekLr~kav~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~K 289 (385)
++|||.-++.|+. ||-++.=.+..---..|.++|+.||...-..+-..|.-
T Consensus 155 f~kLR~DV~~Kle--LLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~ 205 (224)
T 1i4d_A 155 YEKLRGDVAIKLK--FLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQ 205 (224)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999999999999 99776666656666788999988887665555444433
No 4
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.84 E-value=38 Score=28.91 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=43.7
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 90 SIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 90 ~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
..++|++.......|..++...+..+..+-.-|...+..+..+..++..|+++-..+..++.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777788888888888887777777777777777777776666666666555544443
No 5
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=63.80 E-value=20 Score=28.92 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 036757 100 NLVSLHDQIRDCDAILSQMETLL 122 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L 122 (385)
.+......|++|+.+|.+||--+
T Consensus 39 ~i~~ie~~l~EA~ell~qMelE~ 61 (102)
T 1vcs_A 39 MVANVEKQLEEARELLEQMDLEV 61 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888888888887655
No 6
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=62.91 E-value=56 Score=29.40 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHhhhhhc-CChHHHHHhhcC
Q 036757 151 KNRKVAESKLAKFVEDII-IPPRMVDIIVDG 180 (385)
Q Consensus 151 ~NRk~~~~~L~~~V~~i~-Ipp~lI~~I~~g 180 (385)
-|...+..+|..-+.... .+..++....+|
T Consensus 124 ~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~ 154 (192)
T 2p22_C 124 YGDIALKKKLEQNTKKLDEESSQLETTTRSI 154 (192)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456667777777777665 666666666665
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.31 E-value=24 Score=36.65 Aligned_cols=106 Identities=9% Similarity=0.101 Sum_probs=53.0
Q ss_pred hhcCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 036757 66 LSKGTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMD 145 (385)
Q Consensus 66 L~~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~ 145 (385)
+++..|+..-...|.++|.++... +=....-+..+++.|+.-...-...+.. |..--..+...|..|+++
T Consensus 56 dkqErDltkrINELKnqLEdlsKn----sKdseqy~k~~~E~Lr~rq~q~~dNdNt---ynE~S~ELRRrIqyLKek--- 125 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQKN----NKDSHSLTTNIMEILRGDFSSANNRDNT---YNRVSEDLRSRIEVLKRK--- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHH----HHHHHHHHHHHHHTTSSHHHHHHHHHHH---HHHTTHHHHHHHHHHHHH---
T ss_pred HhhcCcHHHHHHHHHHHHHHHHhh----chhHHHHHHHHHHHHHHHHHhhhccchh---HHHHHHHHHHHHHHHHHH---
Confidence 355666666666666666554221 1111112334444444333333344443 333333445566666664
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhc---CChHHHHHhhcCC
Q 036757 146 MGLKLKNRKVAESKLAKFVEDII---IPPRMVDIIVDGE 181 (385)
Q Consensus 146 m~~kL~NRk~~~~~L~~~V~~i~---Ipp~lI~~I~~g~ 181 (385)
++.++.|-++|+..|...+.+|. +-=++-..-|.|+
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 56666666666666666655443 4444444556666
No 8
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=60.15 E-value=94 Score=27.64 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 117 QMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 117 ~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
.|+.+...-..+...+...|..|++
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 9
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.17 E-value=1.7e+02 Score=29.43 Aligned_cols=34 Identities=26% Similarity=0.217 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 118 METLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 118 mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
|=+....|+..|....+.|..||..-...+.++.
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~ 122 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIV 122 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3333445577777777777777776555555554
No 10
>1t7s_A BAG-1 cochaperone; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.80A {Caenorhabditis elegans} SCOP: a.7.7.1
Probab=55.65 E-value=11 Score=32.47 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=48.9
Q ss_pred HhhhChHHHHHHhhc-CCChHHHHHHHHhhhHHhhhhhHHH-------HHHhhh----hHHHHHHHHHHHHHHHHHHHHH
Q 036757 54 EECKNHDVVANILSK-GTTLREYTKGVENNLRQVELDSIQD-------YIKESD----NLVSLHDQIRDCDAILSQMETL 121 (385)
Q Consensus 54 ~~~~~~~~v~~~L~~-g~dLr~ys~~ve~eL~~le~~~Iq~-------yi~~~~----~l~~L~~qI~~cd~~L~~mE~~ 121 (385)
.-|.+.+...+++++ --.+..++++.-+.|..+++-+|+. +-..+. =+..++..+..||.....+..+
T Consensus 48 kGFL~k~l~~ea~kkldKrik~~~E~~MK~LE~LDsl~i~~~~t~~~q~~~~R~KRK~lV~~IQ~~L~~~D~l~~~i~~~ 127 (137)
T 1t7s_A 48 RGFLEKPKQVEMGKKLEKKVKYFNEEAERHLETLDGMNIITETTPENQAKRNREKRKTLVNGIQTLLNQNDALLRRLQEY 127 (137)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccHhHHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHH
Confidence 467777777777753 3456678999999999998877664 222111 1566777788888888888777
Q ss_pred HHHHHHHH
Q 036757 122 LSGFQAEI 129 (385)
Q Consensus 122 L~~Fq~~L 129 (385)
++..|+++
T Consensus 128 ~~~~~~~~ 135 (137)
T 1t7s_A 128 QSVLNGDI 135 (137)
T ss_dssp TC------
T ss_pred HHHHhccc
Confidence 77766654
No 11
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=53.68 E-value=91 Score=29.69 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 151 KNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 151 ~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
.||..-.-+.=.++.-|-+||.+|-.|--=|
T Consensus 272 s~~~N~~mk~LTiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 272 NIKMNQIMKILTMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHHHHHHHHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 4444444556677888899999999998666
No 12
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.36 E-value=31 Score=31.24 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhc
Q 036757 106 DQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVD 179 (385)
Q Consensus 106 ~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~ 179 (385)
++++.++..+..+-.....-...|..-.++|+.||++...+..+. +.....+++-.+.+-|..+|...++.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~---~~~~~~~~~~~e~i~i~~DL~e~LTG 83 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV---KELKTQTSQQAENSEVIKDLYEYLCN 83 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHhhhHHHHHHHHccC
Confidence 344455555555554444444555555556666665544444333 23455556666667777777776653
No 13
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.27 E-value=48 Score=32.94 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAES 158 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~ 158 (385)
+..++..++.-......+|.....+..+...++++|+.|.++...+...+.+-.....
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 5557788888888888888888888899899999999988876666555554433333
No 14
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=48.19 E-value=92 Score=30.00 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCC
Q 036757 149 KLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGE 181 (385)
Q Consensus 149 kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~ 181 (385)
.+.||..-.-+.=..+.-|-+||.+|-.|--=|
T Consensus 294 ~is~~~N~imk~LTiit~IflP~T~IaGiyGMN 326 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 445566556666677888889999998875544
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.98 E-value=1.7e+02 Score=26.86 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=15.0
Q ss_pred hcCCcccccCHHHHHHHHH
Q 036757 192 ICGGAFIQVNEEYMRSLEI 210 (385)
Q Consensus 192 ~~~~~~~~v~e~~i~~l~~ 210 (385)
+|||=|..|+++.+..+..
T Consensus 200 ~C~GC~~~lppq~~~~i~~ 218 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLT 218 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHH
T ss_pred ccCCCCeeeCHHHHHHHHC
Confidence 6899999999887766653
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=45.64 E-value=86 Score=32.62 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=62.1
Q ss_pred cCCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 036757 68 KGTTLREYTKGVENNLRQVELDSIQDYIKESDNLV-SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDM 146 (385)
Q Consensus 68 ~g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~-~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m 146 (385)
+-.+...|.+.+.+.|+.--. ...+.-+.-.++. +|..+|..-+..++.-=..|..-|..|..+..+|+.|+- ++
T Consensus 79 nsKdseqy~k~~~E~Lr~rq~-q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv---DI 154 (562)
T 3ghg_A 79 NNKDSHSLTTNIMEILRGDFS-SANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV---DI 154 (562)
T ss_dssp HHHHHHHHHHHHHHTTSSHHH-HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred hchhHHHHHHHHHHHHHHHHH-hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344556666666666642221 1113333333344 666666666444444337788888888888899988876 44
Q ss_pred hhhh-----------------hhHHHHHHHHHHhhhhhcCChHHH
Q 036757 147 GLKL-----------------KNRKVAESKLAKFVEDIIIPPRMV 174 (385)
Q Consensus 147 ~~kL-----------------~NRk~~~~~L~~~V~~i~Ipp~lI 174 (385)
.+|+ +.-..+++.|.+++..=..|+.-+
T Consensus 155 diqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~p~~~~ 199 (562)
T 3ghg_A 155 DIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLLPSRDR 199 (562)
T ss_dssp HHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCCCSCCC
T ss_pred HHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccCCcccc
Confidence 4444 446677778888776666664433
No 17
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=44.46 E-value=21 Score=30.71 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=44.0
Q ss_pred hhhChHHHHHHhhc-CCChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Q 036757 55 ECKNHDVVANILSK-GTTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDC-DAILSQMETLLSGFQAEIGSI 132 (385)
Q Consensus 55 ~~~~~~~v~~~L~~-g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~c-d~~L~~mE~~L~~Fq~~L~~I 132 (385)
-|.+.+.+.+++++ -..+..++++.-+-|..++.-+|.. ++. ..+.+ ...++.+...|..-+.-...|
T Consensus 50 GFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~------~~~----~~R~kRK~lV~~iQ~~L~~~D~l~~~~ 119 (135)
T 1i6z_A 50 GFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPE------QFK----DSRLKRKNLVKKVQVFLAECDTVEQYI 119 (135)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS------CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCc------cHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666643 3455667777888888887766652 111 22233 344455555555555555556
Q ss_pred HHHHHHHHHH
Q 036757 133 SSDIKILQEK 142 (385)
Q Consensus 133 S~eI~~LQe~ 142 (385)
+.++..||.+
T Consensus 120 ~~~~~~~q~~ 129 (135)
T 1i6z_A 120 CQETERLQST 129 (135)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHhhh
Confidence 6666666553
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=42.99 E-value=1.9e+02 Score=26.03 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH----HHHHHHHHhhhhh
Q 036757 115 LSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK----VAESKLAKFVEDI 167 (385)
Q Consensus 115 L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk----~~~~~L~~~V~~i 167 (385)
.+.++.-++..+.....+...|..|+..+-++..+..+-. .++.+++..|+..
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5555555555566666666666666666666665555433 3344555555543
No 19
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.96 E-value=2.9e+02 Score=28.17 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 036757 103 SLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIK 137 (385)
Q Consensus 103 ~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~ 137 (385)
.|...+..-+..+..++..+..|...|..+...|+
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 34444444455555666666666666655544443
No 20
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=41.98 E-value=79 Score=31.07 Aligned_cols=45 Identities=9% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh-hhhhhhHHHHHHHH
Q 036757 116 SQMETLLSGFQAEIGSISSDIKILQEKSMDM-GLKLKNRKVAESKL 160 (385)
Q Consensus 116 ~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m-~~kL~NRk~~~~~L 160 (385)
...+.++...+.+|..+.+.|.+||.+-..+ ++-+.|||.+.-..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (463)
T 2xz3_A 375 QRLTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLY 420 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 3567888999999999999999999875554 57789999876543
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.80 E-value=1.3e+02 Score=25.71 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh------hHHHH-HHHHHHhhhhhcCChHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK------NRKVA-ESKLAKFVEDIIIPPRM 173 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~------NRk~~-~~~L~~~V~~i~Ipp~l 173 (385)
+.-.-+-+.+-...+++|...=.-.|.+|+.++.++..+|..-..-...|+ |++.+ ..+|..+=-++---..|
T Consensus 34 L~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsM 113 (167)
T 4gkw_A 34 LEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSM 113 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHH
Confidence 333444555666667777777778888888888888888764333333222 23332 24555555555555555
Q ss_pred HHHhhc
Q 036757 174 VDIIVD 179 (385)
Q Consensus 174 I~~I~~ 179 (385)
|..+++
T Consensus 114 Ve~LT~ 119 (167)
T 4gkw_A 114 VESLTE 119 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 22
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.35 E-value=3e+02 Score=27.99 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHhhhhhhhhhhH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIG-----SISSDIKILQEKSMDMGLKLKNR 153 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~-----~IS~eI~~LQe~S~~m~~kL~NR 153 (385)
+.....++.+-...+....+.|..-+..+. .+.+.|..|+.....+..++.+-
T Consensus 130 lk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l 187 (464)
T 1m1j_B 130 LVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKL 187 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555544444333 34677777777766666666543
No 23
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=41.08 E-value=1.2e+02 Score=24.80 Aligned_cols=100 Identities=12% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCChHHHHHhhcCCCCCCCcc------
Q 036757 115 LSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIPPRMVDIIVDGENWNPFYP------ 188 (385)
Q Consensus 115 L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp~lI~~I~~g~~~~~~~~------ 188 (385)
+.++...+..|+.++..+...+..|+..-..+..-+. .++.+...++....+|
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e---------------------~l~~l~~~~~~~~lvplg~~~y 61 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK---------------------TLSDIQGKDGSETLVPVGAGSF 61 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHTTCTTCEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHhcccCCCCeEEEEcCCCcE
Q ss_pred ----------hhhhcCCcccccCHHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHH
Q 036757 189 ----------IILICGGAFIQVNEEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKA 244 (385)
Q Consensus 189 ----------~~~~~~~~~~~v~e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~ka 244 (385)
+++--|..|- |--..=+++..|.+|++.+ ......+...++.++...
T Consensus 62 v~a~i~~~~~V~v~lG~g~~-vE~~~~eA~~~l~~r~~~l--------~~~~~~l~~~l~~l~~~i 118 (133)
T 1fxk_C 62 IKAELKDTSEVIMSVGAGVA-IKKNFEDAMESIKSQKNEL--------ESTLQKMGENLRAITDIM 118 (133)
T ss_dssp EEEECCSTTEEEEEEETTEE-EEEEHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCEEEEEcCCCEE-EEeeHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
No 24
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=38.80 E-value=1.5e+02 Score=23.67 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLL 122 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L 122 (385)
..+.+....|++|+.+|.+||--+
T Consensus 49 ~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 49 KLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888888888765
No 25
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.29 E-value=2.3e+02 Score=28.18 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=9.8
Q ss_pred cCCChHHHHHHHHhhhHHhh
Q 036757 68 KGTTLREYTKGVENNLRQVE 87 (385)
Q Consensus 68 ~g~dLr~ys~~ve~eL~~le 87 (385)
...+++.-.+.|.++|..+.
T Consensus 61 ~er~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 34455544555555555443
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=36.36 E-value=1.7e+02 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 115 LSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 115 L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
|......+..-..++..+..++..||.+-..+...+++
T Consensus 98 l~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444444444444444444444444
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.71 E-value=3.1e+02 Score=30.81 Aligned_cols=58 Identities=10% Similarity=0.154 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh----hhhhhhhhHHHHHHHHHHhhhhh
Q 036757 110 DCDAILSQMETLLSGFQAEIGSISSDIKILQEKSM----DMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 110 ~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~----~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
.....+..+++.+..-..++.....+.+.++++.. ++..+++|-+....+|.+=++++
T Consensus 981 ~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444433333333322 34445555555555555555443
No 28
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=34.73 E-value=2.8e+02 Score=25.79 Aligned_cols=24 Identities=4% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhhh
Q 036757 123 SGFQAEIGSISSDIKILQEKSMDM 146 (385)
Q Consensus 123 ~~Fq~~L~~IS~eI~~LQe~S~~m 146 (385)
..|..+|..-...|..|++++..+
T Consensus 160 ~~le~~l~~~~~~i~~L~~~a~~l 183 (283)
T 3pe0_A 160 QDEKEQLNEYKGHLSGLAKRAKAV 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666655
No 29
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=33.42 E-value=1.8e+02 Score=22.95 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSG 124 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~ 124 (385)
.+......+++|+.+|.+||--+.+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~ 59 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNN 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666677777777777655433
No 30
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.41 E-value=3.5e+02 Score=26.39 Aligned_cols=98 Identities=14% Similarity=0.202 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhHHh--------hhhhHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 60 DVVANILSKGTTLREYTKGVENNLRQV--------ELDSIQDYI-----KESDNLVSLHDQIRDCDAILSQMETLLSGFQ 126 (385)
Q Consensus 60 ~~v~~~L~~g~dLr~ys~~ve~eL~~l--------e~~~Iq~yi-----~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq 126 (385)
+.+.+++..+.+..+-.+.+.++++.+ |..++.+.| +-.+++.++..|-..|...+-.+..-|..=-
T Consensus 359 ~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (471)
T 3mq9_A 359 TAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEK 438 (471)
T ss_dssp HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 344555555666665555554444322 222222222 2235566666666666555544444443322
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 127 AEIGSISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 127 ~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
.. -...|+.|+.+-..++.+|+|.++-.+++
T Consensus 439 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 439 AQ---GQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 12467777777777788888777655554
No 31
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.00 E-value=1.5e+02 Score=21.98 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 036757 105 HDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDM 146 (385)
Q Consensus 105 ~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m 146 (385)
-+-+..+++.+.++=..=+.-..+|.-+.+.|..||..+..+
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 334444454444444444455566777777777777655433
No 32
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=32.94 E-value=2e+02 Score=23.37 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=54.4
Q ss_pred CChHHHHHHHHhhhHHhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 70 TTLREYTKGVENNLRQVELDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 70 ~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
.++-...+.++.++..+...++..--.....+..|...|......|..+-.-|+..+..=..+++.+..++..
T Consensus 25 ~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~E 97 (107)
T 2no2_A 25 VDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKE 97 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788888888887777777777888888888888888888887777776666666666666666553
No 33
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.49 E-value=1.9e+02 Score=22.95 Aligned_cols=49 Identities=8% Similarity=0.283 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 116 SQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 116 ~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
..++..|..-+.+|..++..|..++.. -...+.+||.....+..=|+.|
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~i~e~~---~~~EI~~Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSIIVMKRD---ENEDVSGREAQVKNIKQQLDAL 87 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555666666665532 5667888998888887766654
No 34
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=32.28 E-value=2.8e+02 Score=28.26 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 036757 132 ISSDIKILQEKSMDMGLKLKNRKVAESKL 160 (385)
Q Consensus 132 IS~eI~~LQe~S~~m~~kL~NRk~~~~~L 160 (385)
+-+.|+.||..-..+..++.+-+.....+
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555566655555555555444443333
No 35
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=31.66 E-value=1.4e+02 Score=23.07 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhH-HHHHHHHHHh
Q 036757 113 AILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNR-KVAESKLAKF 163 (385)
Q Consensus 113 ~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NR-k~~~~~L~~~ 163 (385)
..+.+||..|..-|.-+..+=.+..+-|. ||+-| -.++..+.+.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~ssQ~-------KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYESMQQ-------KLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccc
Confidence 34555555555555555555555554444 55555 3444555543
No 36
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=31.66 E-value=85 Score=22.87 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhh
Q 036757 132 ISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDI 167 (385)
Q Consensus 132 IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i 167 (385)
+.+++..|++....|..-+..-+.+...|..+|..+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666676666666666665555555555555443
No 37
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=31.29 E-value=1.7e+02 Score=29.44 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=39.5
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 88 LDSIQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 88 ~~~Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
.++|..+.+.+..+.+ ++..-...+...+..+...|..+.+.++.|..|.+....+..+..
T Consensus 76 ~~n~~~~~q~Skkml~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 76 PNMIDAATLKSRKMLE---EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp TTCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcchhhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666554433 333336667777777777777788888888888877666655543
No 38
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.38 E-value=1.9e+02 Score=22.64 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=48.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhcCC
Q 036757 91 IQDYIKESDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDIIIP 170 (385)
Q Consensus 91 Iq~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~Ip 170 (385)
+.++++.=.++-+|....++| .++.+|++|.+|+.-+..-..+-...+..-.. |..=..++...+..--|+
T Consensus 4 Ms~~lk~L~niR~LRA~arel--~le~Lee~leKl~~VveERree~~~~~~~~~e-------r~~Kl~~~~e~l~~~GI~ 74 (86)
T 3nr7_A 4 MSEALKILNNIRTLRAQARES--TLETLEEMLEKLEVVVNERREEESAAAAEVEE-------RTRKLQQYREMLIADGID 74 (86)
T ss_dssp -CCHHHHHTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCCC
Confidence 344555566777788887777 68889999999988887777776665543222 222233555555555577
Q ss_pred hHHH
Q 036757 171 PRMV 174 (385)
Q Consensus 171 p~lI 174 (385)
|+-.
T Consensus 75 ~eeL 78 (86)
T 3nr7_A 75 PNEL 78 (86)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.74 E-value=2.1e+02 Score=36.24 Aligned_cols=54 Identities=11% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRK 154 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk 154 (385)
+.....++.++...|..+|+.|...+.+....-.+.+.|+.+-.....||..-.
T Consensus 2023 l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2023 ANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555555555555544333
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=29.67 E-value=4.3e+02 Score=26.29 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=52.7
Q ss_pred hcCCChHHHHHHHHhhhHHhhh---hhHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 67 SKGTTLREYTKGVENNLRQVEL---DSIQDYIKESDNLVSLHDQIRDC-DAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 67 ~~g~dLr~ys~~ve~eL~~le~---~~Iq~yi~~~~~l~~L~~qI~~c-d~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
+.-.+...|++.+.+-|+.-.. ++-..|-+-++ +|..+|..- ..+-+++. .|..-|..|..+..+|+.|+..
T Consensus 81 ~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~---eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~ 156 (390)
T 1deq_A 81 KNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINE---DLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVD 156 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH---HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777666665553321 11112222222 233333333 33444555 6777778888888888888753
Q ss_pred --------------hhhhhhhhhhHHHHHHHHHHhhhhhcCCh
Q 036757 143 --------------SMDMGLKLKNRKVAESKLAKFVEDIIIPP 171 (385)
Q Consensus 143 --------------S~~m~~kL~NRk~~~~~L~~~V~~i~Ipp 171 (385)
+....+-+++....++.|.+++..=..|.
T Consensus 157 Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a~~llP~ 199 (390)
T 1deq_A 157 IDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIAINLLPS 199 (390)
T ss_pred HHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhhhccccc
Confidence 22233345556666666666555444443
No 41
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=29.37 E-value=1.9e+02 Score=22.12 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
.++.|.+.+..-+....++++.+.-=..+...+-+||-++-=.+.-++.||.+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888887777777777664
No 42
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=29.01 E-value=2.2e+02 Score=24.62 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 101 LVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 101 l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
+..+...+.....-|..-|..|... ++|.--.++..+..+-..+...+..+..-...|.
T Consensus 121 l~~F~~d~~~~~~WL~~~e~~L~~~--~~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~ 179 (218)
T 3fb2_A 121 LQLFHRDCEQAENWMAAREAFLNTE--DKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQ 179 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3344444555555566666666553 4554444455555555555555554443333333
No 43
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.18 E-value=1.7e+02 Score=21.00 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
.+.+|-.+++.--..++.+.. |...+.+++..-++.-.+-+.||.|
T Consensus 5 ki~~Lss~V~~L~~kVdqLss-------dV~al~~~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN-------DANAARSDAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455555555555555555443 7778888888888888888888876
No 44
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=27.91 E-value=2.8e+02 Score=23.57 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccchhhhhhhHHHHHHHHHHHHHHHhHHH--------HHhhcCHHHHHHHHHHHHHHHH
Q 036757 202 EEYMRSLEILSKKLKFIGVDPMVKTSKALKDVQPELEKLRQKAVSKVYYF--------FLKGHGKEIYNEVRAAYIDTMN 273 (385)
Q Consensus 202 e~~i~~l~~L~~kl~~i~~~~~~~~~~A~~Dv~~~LekLr~kav~rir~f--------FL~~~~~~~a~El~~aYv~tms 273 (385)
++-++.+..++.+..... |.-...=.-|.++++|+..| .+.+++..-|..++...++ ||
T Consensus 52 eevl~~l~~v~~~~~~~~------------~~i~~Y~~~Ra~~v~K~~k~p~v~Dy~~~v~e~Dek~~~~lr~~~~e-lR 118 (140)
T 1avo_B 52 EKVFELMTSLHTKLEGFH------------TQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVME-IR 118 (140)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHCTTBTHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 566666666665555431 22233444567788887654 7888888888888887776 56
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 036757 274 KVLSAHFRAYIQALEKLQ 291 (385)
Q Consensus 274 k~Y~~~Fr~Y~~~L~KL~ 291 (385)
..|...+--+...++|+.
T Consensus 119 n~Y~~l~D~i~KN~eKi~ 136 (140)
T 1avo_B 119 NAYAVLYDIILKNFEKLK 136 (140)
T ss_dssp HHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhHHHhc
Confidence 667777777777788875
No 45
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.16 E-value=3.4e+02 Score=24.30 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=24.6
Q ss_pred HHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 036757 93 DYIKESDNL-VSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKIL 139 (385)
Q Consensus 93 ~yi~~~~~l-~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~L 139 (385)
+|..++..+ ..|-.+|..|..-...+...+.....++..........
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555 34555555555555555555555555554444333333
No 46
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=26.42 E-value=40 Score=28.14 Aligned_cols=72 Identities=19% Similarity=0.313 Sum_probs=45.1
Q ss_pred hhchHHHHH----hhhChHHHHHHhhc-CCChHHHHHHHHhhhHHhhhhhHHHHHHhhh-----hHHHHHHHHHHHHHHH
Q 036757 46 LEGLEQELE----ECKNHDVVANILSK-GTTLREYTKGVENNLRQVELDSIQDYIKESD-----NLVSLHDQIRDCDAIL 115 (385)
Q Consensus 46 ~~~l~~~l~----~~~~~~~v~~~L~~-g~dLr~ys~~ve~eL~~le~~~Iq~yi~~~~-----~l~~L~~qI~~cd~~L 115 (385)
+++++++|. -|.+.+...+++++ -..+..++++.-+.|.+++.-+|+.=.+.+. -|..++..+..||.+.
T Consensus 27 l~~~~~el~~iekGFL~kel~~eal~kldKrik~~~E~~MK~LE~lDsl~i~e~~~~~R~kRK~lV~~iQ~~l~~cD~l~ 106 (114)
T 1hx1_B 27 LEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAECDTVE 106 (114)
T ss_dssp HHHHHHHHHHHHHSCSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 455555555 46677888888854 4456678888889999888766653222111 1555666666666655
Q ss_pred HH
Q 036757 116 SQ 117 (385)
Q Consensus 116 ~~ 117 (385)
..
T Consensus 107 ~~ 108 (114)
T 1hx1_B 107 QN 108 (114)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 47
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=26.32 E-value=1.5e+02 Score=23.41 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 243 KAVSKVYYFFLKGHGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEK 289 (385)
Q Consensus 243 kav~rir~fFL~~~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~K 289 (385)
-.++||| ||-..+..+-.++...+-...+.++ ..|..|+..|.+
T Consensus 20 syIdKVR--~LEqqN~~Le~~i~~l~~~~~~~~~-~~ye~~i~~Lr~ 63 (93)
T 3s4r_A 20 NLIDKVR--FLEQQNKILLAELEQLKGQGKSRLG-DLYEEEMRELRR 63 (93)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhhccCCCcH-HHHHHHHHHHHH
Confidence 4677888 8888888888888877766666555 356667766655
No 48
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=25.74 E-value=3.5e+02 Score=27.10 Aligned_cols=120 Identities=11% Similarity=0.092 Sum_probs=61.4
Q ss_pred hchHHHHHhhhChHHHHHHhhcCCCh-----------HHHHHHHHhhhHHhhh--hhHHHHHHhhhhHHHHHHHHHHHHH
Q 036757 47 EGLEQELEECKNHDVVANILSKGTTL-----------REYTKGVENNLRQVEL--DSIQDYIKESDNLVSLHDQIRDCDA 113 (385)
Q Consensus 47 ~~l~~~l~~~~~~~~v~~~L~~g~dL-----------r~ys~~ve~eL~~le~--~~Iq~yi~~~~~l~~L~~qI~~cd~ 113 (385)
..++.+|... .+.+..+...|..| +++...+...-..+.. +....-++++..+...+...+++.+
T Consensus 136 q~l~~EL~~~--e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~Eaes 213 (450)
T 3r6n_A 136 SIRMSQLEVK--EKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEA 213 (450)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--hHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455555532 35666666665544 3444444333333322 3345556666666666666677777
Q ss_pred HHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhhhhhc
Q 036757 114 ILSQMETLLSGF-QAEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLAKFVEDII 168 (385)
Q Consensus 114 ~L~~mE~~L~~F-q~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~~~V~~i~ 168 (385)
-|...+..|..= ..|.|.=-.....|..+-..+...+..-+.....|..--..++
T Consensus 214 WL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~~l~~~~~~I~~L~~qA~~l~ 269 (450)
T 3r6n_A 214 YLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKEREKILEYKRQVQNLVNKSKKIV 269 (450)
T ss_dssp HHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776666666432 1133322222334444444455566655555555555555543
No 49
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=25.47 E-value=2.5e+02 Score=22.13 Aligned_cols=43 Identities=21% Similarity=0.374 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhH----HHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILS-----------QMETLLSGFQAEIGSI----SSDIKILQE 141 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~-----------~mE~~L~~Fq~~L~~I----S~eI~~LQe 141 (385)
.++++|..+...|-..|. ++++--..|...|.+| +.||+.|.+
T Consensus 15 ~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdE 72 (86)
T 3r84_A 15 TQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777766665 3778888888888887 555555555
No 50
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.56 E-value=3.5e+02 Score=23.51 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
.+.+..|...+......+.+++..|..=...+..+.+++..||-+-..+..+++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888877777777788888887777666666655
No 51
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.00 E-value=2.5e+02 Score=21.71 Aligned_cols=56 Identities=11% Similarity=0.329 Sum_probs=32.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 036757 91 IQDYIKESDNLVSLHDQIRDC-DAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL 150 (385)
Q Consensus 91 Iq~yi~~~~~l~~L~~qI~~c-d~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL 150 (385)
|...|.+..++..-++-++-. ++.+.+++++=+ +=..++.++.++++-...+..++
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~----E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTC----EKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777888888888877 666677766432 22334445555554444444333
No 52
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.94 E-value=1.4e+02 Score=21.64 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
+++..|+..+..-...-..|.+.|..-..-|..+..++...+.+
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~ 52 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544443
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.92 E-value=3.4e+02 Score=22.39 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKL 150 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL 150 (385)
..+|..|..+++.+...|..|..-.+-++++ ++.+|..|..--..++.+|
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL 93 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEEL 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3559999999999999999998877777754 4455555544333333333
No 54
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.80 E-value=3e+02 Score=21.72 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDC-DAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 98 ~~~l~~L~~qI~~c-d~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
.+.+..+..+|++. +...+.|+.+|.+ .+.|..|.+++..|...-.
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeR--------GEkLd~L~dkse~L~~~S~ 75 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLER--------DQKLSELDDRADALQAGAS 75 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHH
Confidence 45677777777777 3344556665554 4555556666555554443
No 55
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=21.55 E-value=2.6e+02 Score=21.14 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhh
Q 036757 98 SDNLVSLHDQIRDCD-AILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLKN 152 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd-~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~N 152 (385)
.+.+..+..+|++.. ...+.|+.+|.+ .+.|..|.++|..|+..-..
T Consensus 14 ~d~l~~vq~el~ev~~iM~~NI~~vLeR--------GekLd~L~~kt~~L~~~s~~ 61 (80)
T 1l4a_A 14 SKRLQQTQAQVEEVVDIMRVNVDKVLER--------DSKISELDDRADALQAGASQ 61 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTTTTTSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH
Confidence 456777777777773 344556665554 67788888888888766544
No 56
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=21.24 E-value=2.1e+02 Score=20.64 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 036757 127 AEIGSISSDIKILQEKSMDMGLKLKNRKVAESKLA 161 (385)
Q Consensus 127 ~~L~~IS~eI~~LQe~S~~m~~kL~NRk~~~~~L~ 161 (385)
..|..+|.-+..|..-+..|+..+..+-.+...|.
T Consensus 10 ~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~ 44 (66)
T 1n7s_D 10 ENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIM 44 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444433
No 57
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=21.20 E-value=2.3e+02 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=29.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhH
Q 036757 93 DYIKESDNLVSLHDQIRDCDAILSQMETLL---SGFQAEIGSI 132 (385)
Q Consensus 93 ~yi~~~~~l~~L~~qI~~cd~~L~~mE~~L---~~Fq~~L~~I 132 (385)
..++..+.+..||..+..|...=..||.-| ...|.+|+.+
T Consensus 6 ~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~ 48 (64)
T 3t97_C 6 TLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDL 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778889999999999888877777665 3445555543
No 58
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.04 E-value=3.4e+02 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHH
Q 036757 98 SDNLVSLHDQIRDCDAILSQMETLLSGFQAEIGSIS----SDIKILQE 141 (385)
Q Consensus 98 ~~~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS----~eI~~LQe 141 (385)
+.+++.|.+.++++--.-..+|..+.+-+.+|..+. .||+.||.
T Consensus 68 E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~heeEl~eLq~ 115 (119)
T 3ol1_A 68 ENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888777667777777777777777763 46666664
No 59
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.72 E-value=2.5e+02 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 036757 104 LHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQE 141 (385)
Q Consensus 104 L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe 141 (385)
|...|......+..|+..|..-+..|..+...|..|++
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=20.51 E-value=2.8e+02 Score=20.94 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhh
Q 036757 100 NLVSLHDQIRDCDAILSQMETLLSGFQAEIGSISSDIKILQEKSMDMGLKLK 151 (385)
Q Consensus 100 ~l~~L~~qI~~cd~~L~~mE~~L~~Fq~~L~~IS~eI~~LQe~S~~m~~kL~ 151 (385)
....+...+..+.......|.-+...+.-+..+..++...+++-...+.+|.
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555444444443
No 61
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.26 E-value=1.6e+02 Score=24.77 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH
Q 036757 99 DNLVSLHDQIRDCDAILSQME-----TLLSGFQAEIGSISSDIKILQEK 142 (385)
Q Consensus 99 ~~l~~L~~qI~~cd~~L~~mE-----~~L~~Fq~~L~~IS~eI~~LQe~ 142 (385)
.++..|++.++.|..-+...+ .++..|..++..+..+|..|..+
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999998888775 57899999999999999999764
No 62
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=20.23 E-value=4.1e+02 Score=23.87 Aligned_cols=30 Identities=20% Similarity=0.534 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036757 256 HGKEIYNEVRAAYIDTMNKVLSAHFRAYIQALEK 289 (385)
Q Consensus 256 ~~~~~a~El~~aYv~tmsk~Y~~~Fr~Y~~~L~K 289 (385)
|.|.+-..|...=++-++. .+++|++.|-+
T Consensus 164 htPSLLrdVF~TTVnfInq----Nl~aYvr~L~R 193 (197)
T 2bid_A 164 HTPSLLRDVFHTTVNFINQ----NLRTYVRSLAR 193 (197)
T ss_dssp HCTTCHHHHHHHHHHHHHT----TTHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 8999877777666655554 45566666654
Done!