BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036759
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 9/162 (5%)
Query: 5 LPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAEFLKTH 64
LPP GF LHLL P L L + GP+ LRLGL +V++S + E
Sbjct: 30 LPPLVPGF-----LHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIR 84
Query: 65 DLI-FASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEE 123
+ FA RP + + K +S + ++ ++ Y W+ +KL LL + + +P +
Sbjct: 85 KWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR-SSMEPWVDQL 143
Query: 124 LDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRS 165
E + A AP V I + S ++ ++ C + G K
Sbjct: 144 TQEFCERMRVQAGAP--VTIQKEFSLLTCSIICYLTFGNKED 183
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 11/168 (6%)
Query: 6 PPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTH 64
PPGP G+P++G + LGK P AL ++++ YG ++ +R+G +V+S + L
Sbjct: 13 PPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQALVRQ 72
Query: 65 DLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKIN---------Y 115
F RP L IS Q G W R+L QN L + I Y
Sbjct: 73 GDDFKGRPDLYTFTLISNGQSMSFSPDSGPVWAARRRLA-QNGLKSFSIASDPASSTSCY 131
Query: 116 FQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+ +E ++LI +E P + + N+ C + G++
Sbjct: 132 LEEHVSKEAEVLISTLQELMAGPGHFNPYRYVVVSVTNVICAICFGRR 179
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 13/175 (7%)
Query: 6 PPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTH 64
PP P G+P++G + LGK P AL ++++ YG ++ +R+G +V+S + L
Sbjct: 18 PPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQ 77
Query: 65 DLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKIN---------Y 115
F RP L + I+ Q G W R+L QN L I Y
Sbjct: 78 GDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLA-QNALNTFSIASDPASSSSCY 136
Query: 116 FQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK--RSDDE 168
+ +E LI +E P D ++ AN+ M G+ S DE
Sbjct: 137 LEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGAMCFGQHFPESSDE 191
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 12 FPIVGCLHLLGKFPPRALH------KLAKIYGPIMHLRLGLMTTIVVSSPQ-AAEFLKTH 64
P+VG L F PR H KL K YGPI +R+G TT++V Q A E L
Sbjct: 16 LPLVGSL----PFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKK 71
Query: 65 DLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLC 103
F+ RP + S +K A A G++W+ R+L
Sbjct: 72 GKDFSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRLA 110
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP FPI+G L + K ++L K ++ YGP+ + LG+ T+V+ +A E L
Sbjct: 11 LPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKEALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNLLT-NAKINYFQPIR 120
FA R + + +S K +A W+++R+ L +
Sbjct: 71 DLGEEFAGRGSVPILEKVS---KGLGIAFSNAKTWKEMRRFSLMTLRNFGMGKRSIEDRI 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK--RSDDEF 169
+EE L+E ++ +PC D + L N+ C ++ + D+EF
Sbjct: 128 QEEARCLVEELRKTNASPC--DPTFILGCAPCNVICSVIFHNRFDYKDEEF 176
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 6 PPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTH 64
PPGP +P++G +G+ + +LA+ YG + +RLG +V++ +A + L
Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70
Query: 65 DLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTN 110
FA RP + + +S ++ A Y +W K+++ +++ N
Sbjct: 71 GSAFADRPSFASFRVVS-GGRSMAFGHYSEHW-KVQRRAAHSMMRN 114
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 2 RKILPPGPKGFPIVGCLHLLG-KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-E 59
R LPPGP P++G + +G K ++L L+K+YGP+ L GL +V+ +A E
Sbjct: 9 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKE 68
Query: 60 FLKTHDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNLLT-NAKINYFQ 117
L F+ R + + + F + G W++IR+ L +
Sbjct: 69 ALIDLGEEFSGRGIFPLAERAN---RGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIE 125
Query: 118 PIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E ++ +PC D + L N+ C ++ K+
Sbjct: 126 DRVQEEARCLVEELRKTKASPC--DPTFILGCAPCNVICSIIFHKR 169
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 9/166 (5%)
Query: 2 RKILPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-E 59
R LPPGP P++G L + K ++L L+KIYGP+ L GL +V+ + E
Sbjct: 9 RGKLPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKE 68
Query: 60 FLKTHDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNLLT-NAKINYFQ 117
L F+ R + + + F + G W++IR+ L +
Sbjct: 69 ALIDLGEEFSGRGHFPLAERAN---RGFGIVFSNGKRWKEIRRFSLMTLRNFGMGKRSIE 125
Query: 118 PIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E ++ +PC D + L N+ C ++ K+
Sbjct: 126 DRVQEEARCLVEELRKTKASPC--DPTFILGCAPCNVICSIIFQKR 169
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 9/162 (5%)
Query: 6 PPGPKGFPIVGCLHLLG-KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKT 63
PPGP P++G + +G K ++L L+K+YGP+ L GL +V+ +A E L
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 64 HDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNLLT-NAKINYFQPIRK 121
F+ R + + + F + G W++IR+ L + +
Sbjct: 71 LGEEFSGRGIFPLAERAN---RGFGIVFSNGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQ 127
Query: 122 EELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
EE L+E ++ +PC D + L N+ C ++ K+
Sbjct: 128 EEARCLVEELRKTKASPC--DPTFILGCAPCNVICSIIFHKR 167
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 70/162 (43%), Gaps = 7/162 (4%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP PI+G L + K ++ +K+YGP+ + G+ +V +A E L
Sbjct: 11 LPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALI 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLT-NAKINYFQPIRK 121
+ F+ R ++ I+ ++ G W++IR+ L + +
Sbjct: 71 DNGEEFSGRGNSPISQRITKGLG--IISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRVQ 128
Query: 122 EELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
EE L+E ++ +PC D + L N+ C +V K+
Sbjct: 129 EEAHCLVEELRKTKASPC--DPTFILGCAPCNVICSVVFQKR 168
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P++G L + K R+ +L + YG + + LG +V+ A E L
Sbjct: 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK--LCTQNLLTNAKINYFQPIR 120
F+ R + I +Q A G WR +R+ L T K + + I
Sbjct: 71 DQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERI- 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E +++ A ++D + ++++N+ C +V GK+
Sbjct: 128 QEEARCLVEELRKSKGA--LLDNTLLFHSITSNIICSIVFGKR 168
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P++G L + K R+ +L + YG + + LG +V+ A E L
Sbjct: 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK--LCTQNLLTNAKINYFQPIR 120
F+ R + I +Q A G WR +R+ L T K + + I
Sbjct: 71 DQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERI- 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E +++ A ++D + ++++N+ C +V GK+
Sbjct: 128 QEEARCLVEELRKSKGA--LLDNTLLFHSITSNIICSIVFGKR 168
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P++G L + K R+ +L + YG + + LG +V+ A E L
Sbjct: 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK--LCTQNLLTNAKINYFQPIR 120
F+ R + I +Q A G WR +R+ L T K + + I
Sbjct: 71 DQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERI- 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E +++ A ++D + ++++N+ C +V GK+
Sbjct: 128 QEEARCLVEELRKSKGA--LLDNTLLFHSITSNIICSIVFGKR 168
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P++G L + K R+ +L + YG + + LG +V+ A E L
Sbjct: 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK--LCTQNLLTNAKINYFQPIR 120
F+ R + I +Q A G WR +R+ L T K + + I
Sbjct: 71 DQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERI- 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E +++ A ++D + ++++N+ C +V GK+
Sbjct: 128 QEEARCLVEELRKSKGA--LLDNTLLFHSITSNIICSIVFGKR 168
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 5 LPPGPKGFPIVG-CLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P++G L + K R+ +L + YG + + LG +V+ A E L
Sbjct: 11 LPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK--LCTQNLLTNAKINYFQPIR 120
F+ R + I +Q A G WR +R+ L T K + + I
Sbjct: 71 DQAEAFSGRGKIAVVDPI-FQGYGVIFA-NGERWRALRRFSLATMRDFGMGKRSVEERI- 127
Query: 121 KEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK 163
+EE L+E +++ A ++D + ++++N+ C +V GK+
Sbjct: 128 QEEARCLVEELRKSKGA--LLDNTLLFHSITSNIICSIVFGKR 168
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 26 PRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTHDLIFASRPPLQATKYISY-- 82
P +L + +G + L+L +V++ A E L TH A RPP+ T+ + +
Sbjct: 33 PYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGP 92
Query: 83 QQKNFAMAPYGSYWRKIRKLCTQNL--LTNAKINYFQPIRKEELDLLIEYFKEAARA--P 138
+ + +A YG WR+ R+ L L K + Q + +E L + + R P
Sbjct: 93 RSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRP 152
Query: 139 CVVDISAKLSAVSANMTC 156
+ + +S V A++TC
Sbjct: 153 NGL-LDKAVSNVIASLTC 169
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 26 PRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTHDLIFASRPPLQATKYISY-- 82
P +L + +G + L+L +V++ A E L TH A RPP+ T+ + +
Sbjct: 33 PYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGP 92
Query: 83 QQKNFAMAPYGSYWRKIRKLCTQNL--LTNAKINYFQPIRKEELDLLIEYFKEAARA--P 138
+ + +A YG WR+ R+ L L K + Q + +E L + + R P
Sbjct: 93 RSQGVFLARYGPAWREQRRFSVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRP 152
Query: 139 CVVDISAKLSAVSANMTC 156
+ + +S V A++TC
Sbjct: 153 NGL-LDKAVSNVIASLTC 169
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 5 LPPGPKGFPIVGCLHLLG-KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP PI+G L L K P++ +LA+ +GP+ L +G +V+ +A E L
Sbjct: 11 LPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALL 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNL 107
+ F+ R L A + +++ + G W+ IR+ L
Sbjct: 71 DYKDEFSGRGDLPA--FHAHRDRGIIFN-NGPTWKDIRRFSLTTL 112
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 15/169 (8%)
Query: 7 PGPKGFPIVGCL-HLLGKFPPRALH----KLAKIYGPIMHLRLGLMTTIVVSSPQAAEFL 61
PGP +P++G L + K + H + K YG I ++LG ++ + SP E L
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 62 KTHDLIFASRPPLQATK-YISYQQKNFA-MAPYGSYWRKIRKLCTQNLLTNAKI----NY 115
+ R ++ K Y ++ + + M G W+++R + L+ +I
Sbjct: 87 YRTESAHPQRLEIKPWKAYRDHRNEAYGLMILEGQEWQRVRSAFQKKLMKPVEIMKLDKK 146
Query: 116 FQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKR 164
+ + L+ + E E R P D+ ++L+ S C +VL +KR
Sbjct: 147 INEVLADFLERMDELCDERGRIP---DLYSELNKWSFESIC-LVLYEKR 191
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 13/172 (7%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKEALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + +A G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWLFKGYGVAFSNGERAKQLRRFSIATLRGFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKK--RSDDEF 169
+EE LI+ + A +D + LS +N+ +V G + D EF
Sbjct: 128 -QEEAGFLIDALRGTHGAN--IDPTFFLSRTVSNVISSIVFGDRFDYEDKEF 176
>pdb|3JXP|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(pqqb) From Pseudomonas Putida
Length = 321
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 116 FQPIRKEELDLLIEYFKEAAR---APCVVDISAKLSAVSANMTCRMVLGKKRSDDEFDER 172
F P + L L++E + + AP + + KL A+ C +V G DDE R
Sbjct: 175 FDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEMQRR 234
Query: 173 GFET 176
G T
Sbjct: 235 GVGT 238
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTHDLIFASRPPLQATKYIS 81
+ P + K +++YG I L LG ++T+V++ E L IFA RP L ++
Sbjct: 34 ELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT 93
Query: 82 YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARA--PC 139
+ + YG W R+L + Y Q + ++ ++F +A
Sbjct: 94 -KMGGLLNSRYGRGWVDHRRLAVNSF---RYFGYGQKSFESKILEETKFFNDAIETYKGR 149
Query: 140 VVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
D ++ +N+T ++ G++ + ++ D
Sbjct: 150 PFDFKQLITNAVSNITNLIIFGERFTYEDTD 180
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + + G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
+EE LI+ + A +D + LS +N+ +V G D FD
Sbjct: 128 -QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFG-----DRFD 170
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 7/151 (4%)
Query: 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLKTHDLIFASRPPLQATKYIS 81
+ P + K +++YG I L LG ++T+V++ E L IFA RP L ++
Sbjct: 34 ELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLFMKMT 93
Query: 82 YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARA--PC 139
+ + YG W R+L + Y Q + ++ ++F +A
Sbjct: 94 -KMGGLLNSRYGRGWVDHRRLAVNSF---RYFGYGQKSFESKILEETKFFNDAIETYKGR 149
Query: 140 VVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
D ++ +N+T ++ G++ + ++ D
Sbjct: 150 PFDFKQLITNAVSNITNLIIFGERFTYEDTD 180
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + + G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
+EE LI+ + A +D + LS +N+ +V G D FD
Sbjct: 128 -QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFG-----DRFD 170
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + + G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
+EE LI+ + A +D + LS +N+ +V G D FD
Sbjct: 128 -QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFG-----DRFD 170
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + + G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
+EE LI+ + A +D + LS +N+ +V G D FD
Sbjct: 128 -QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFG-----DRFD 170
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 5 LPPGPKGFPIVGC-LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAA-EFLK 62
LPPGP P +G L L + +L K+++ YGP+ + LG +V+ A E L
Sbjct: 11 LPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALV 70
Query: 63 THDLIFASRPPLQATKYISYQQKNFAMA-PYGSYWRKIRKLCTQNL--LTNAKINYFQPI 119
F+ R QAT + K + + G +++R+ L K + I
Sbjct: 71 DQAEEFSGRGE-QAT--FDWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVGKRGIEERI 127
Query: 120 RKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDDEFD 170
+EE LI+ + A +D + LS +N+ +V G D FD
Sbjct: 128 -QEEAGFLIDALRGTGGAN--IDPTFFLSRTVSNVISSIVFG-----DRFD 170
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 10/136 (7%)
Query: 36 YGPIMHLRLGLMTTIVVSSPQAAEFLKTHDLIFASR---PPLQATKYISYQQKNFA-MAP 91
YGPI +LG + ++ + P+ L + + R PP A Y Y QK +
Sbjct: 47 YGPIYREKLGNLESVYIIHPEDVAHLFKFEGSYPERYDIPPWLA--YHRYYQKPIGVLFK 104
Query: 92 YGSYWRKIRKLCTQNLLTNAKINYF----QPIRKEELDLLIEYFKEAARAPCVVDISAKL 147
W+K R + ++ I F P+ ++ + LL + K+ V DI L
Sbjct: 105 KSGTWKKDRVVLNTEVMAPEAIKNFIPLLNPVSQDFVSLLHKRIKQQGSGKFVGDIKEDL 164
Query: 148 SAVSANMTCRMVLGKK 163
+ ++ G++
Sbjct: 165 FHFAFESITNVMFGER 180
>pdb|1XTO|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein
(Pqqb) From Pseudomonas Putida, Northeast Structural
Genomics Target Ppr6
Length = 311
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 116 FQPIRKEELDLLIEYFKEAAR---APCVVDISAKLSAVSANMTCRMVLGKKRSDDEFDER 172
F P + L L +E + + AP + + KL A C +V G DDE R
Sbjct: 173 FDPHPGDNLGLXVEDTRTGGKLFYAPGLGQVDEKLLAXXHGADCLLVDGTLWEDDEXQRR 232
Query: 173 GFET 176
G T
Sbjct: 233 GVGT 236
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 24 FPP-RALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAEFLKTHDLIF-ASRPPLQATKYIS 81
FP RA+ K P +LR L T I ++ E + + S P L+A YI
Sbjct: 353 FPDERAMDDARKFAEP--YLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYID 410
Query: 82 YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINY--FQPIRKEELDLLIEYFKEAARA 137
N+ Y ++ L L AK+++ Q + +EEL LL ++KE+ A
Sbjct: 411 SYDDNYVWQRKTLY--RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA 466
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Query: 93 GSYWRKIRKLCTQNL--LTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAV 150
G+ W+ +R+ + K + + I +EE LIE +++ A ++D + ++
Sbjct: 99 GNRWKVLRRFSVTTMRDFGMGKRSVEERI-QEEAQCLIEELRKSKGA--LMDPTFLFQSI 155
Query: 151 SANMTCRMVLGKK--RSDDEF 169
+AN+ C +V GK+ D EF
Sbjct: 156 TANIICSIVFGKRFHYQDQEF 176
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 36 YGPIMHLRLGLMTTIVVSSPQAAEFLKTHDLIFASRPP----LQATKYISYQQKNFAMAP 91
YGPI +LG + ++ V P+ L+F S P +++Y Q + P
Sbjct: 42 YGPIYREKLGNVESVYVIDPEDVA------LLFKSEGPNPERFLIPPWVAYHQ--YYQRP 93
Query: 92 YG------SYWRKIRKLCTQNLLTNAKINYFQP----IRKEELDLLIEYFKEAARAPCVV 141
G + W+K R Q ++ F P + ++ + +L K+A
Sbjct: 94 IGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSG 153
Query: 142 DISAKLSAVSANMTCRMVLGKKRS 165
DIS L + ++ G+++
Sbjct: 154 DISDDLFRFAFESITNVIFGERQG 177
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 22/144 (15%)
Query: 36 YGPIMHLRLGLMTTIVVSSPQAAEFLKTHDLIFASRPP----LQATKYISYQQKNFAMAP 91
YGPI +LG + ++ V P+ L+F S P +++Y Q + P
Sbjct: 45 YGPIYREKLGNVESVYVIDPEDVA------LLFKSEGPNPERFLIPPWVAYHQ--YYQRP 96
Query: 92 YG------SYWRKIRKLCTQNLLTNAKINYFQP----IRKEELDLLIEYFKEAARAPCVV 141
G + W+K R Q ++ F P + ++ + +L K+A
Sbjct: 97 IGVLLKKSAAWKKDRVALNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSG 156
Query: 142 DISAKLSAVSANMTCRMVLGKKRS 165
DIS L + ++ G+++
Sbjct: 157 DISDDLFRFAFESITNVIFGERQG 180
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 71 RP--PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQN 106
RP P+ KY SY P GSYW I CTQ+
Sbjct: 324 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQD 359
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 71 RP--PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQN 106
RP P+ KY SY P GSYW I CTQ+
Sbjct: 324 RPYFPVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQD 359
>pdb|4AYD|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYD|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYD|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 R106a Mutant
pdb|4AYE|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYE|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYE|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 1 E283ae304a Mutant
pdb|4AYI|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 Wild Type
pdb|4AYI|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 Wild Type
pdb|4AYM|A Chain A, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|B Chain B, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|E Chain E, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
pdb|4AYM|F Chain F, Structure Of A Complex Between Ccps 6 And 7 Of Human
Complement Factor H And Neisseria Meningitidis Fhbp
Variant 3 P106a Mutant
Length = 125
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 73 PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA 111
P+ KY SY P GSYW I CTQ+ + A
Sbjct: 28 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 64
>pdb|2W80|A Chain A, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|B Chain B, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|E Chain E, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W80|G Chain G, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|A Chain A, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|B Chain B, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
pdb|2W81|E Chain E, Structure Of A Complex Between Neisseria Meningitidis
Factor H Binding Protein And Ccps 6-7 Of Human
Complement Factor H
Length = 123
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 73 PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA 111
P+ KY SY P GSYW I CTQ+ + A
Sbjct: 26 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 62
>pdb|2V8E|A Chain A, Crystal Structure Of Human Complement Factor H, Scr
Domains 6-8 (H402 Risk Variant), In Complex With Ligand
Length = 187
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 73 PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA 111
P+ KY SY P GSYW I CTQ+ + A
Sbjct: 27 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|2UWN|A Chain A, Crystal Structure Of Human Complement Factor H, Scr
Domains 6-8 (h402 Risk Variant), In Complex With Ligand
Length = 187
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 73 PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA 111
P+ KY SY P GSYW I CTQ+ + A
Sbjct: 27 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|2IC4|A Chain A, Solution Structure Of The His402 Allotype Of The Factor H
Scr6-Scr7-Scr8 Fragment
Length = 187
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 73 PLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA 111
P+ KY SY P GSYW I CTQ+ + A
Sbjct: 27 PVAVGKYYSYYCDEHFETPSGSYWDHIH--CTQDGWSPA 63
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In
Complex With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With
Bicalutamide Bound
Length = 456
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 33 AKIYGPIMHLRLGLMTTIVVSSPQAAE 59
AK YGP++ + + T+++V+SP++ +
Sbjct: 20 AKKYGPVVRVNVFHKTSVIVTSPESVK 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,118,329
Number of Sequences: 62578
Number of extensions: 183825
Number of successful extensions: 337
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 43
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)