Query 036759
Match_columns 176
No_of_seqs 142 out of 1782
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 08:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swz_A Steroid 17-alpha-hydrox 100.0 5.8E-29 2E-33 188.5 14.1 162 2-166 6-172 (494)
2 3nxu_A Cytochrome P450 3A4; al 100.0 3.6E-29 1.2E-33 189.2 11.7 159 3-166 13-173 (485)
3 3pm0_A Cypib1, cytochrome P450 100.0 6.6E-29 2.3E-33 188.5 12.2 164 2-167 7-177 (507)
4 3e6i_A CYPIIE1, P450-J, cytoch 99.9 1.6E-27 5.6E-32 179.6 12.8 160 2-167 8-171 (476)
5 2fdv_A Cytochrome P450 2A6; CY 99.9 2.1E-27 7.1E-32 179.3 13.3 160 2-166 8-171 (476)
6 1po5_A Cytochrome P450 2B4; ox 99.9 2.2E-27 7.4E-32 179.2 12.7 160 2-166 8-171 (476)
7 3tbg_A Cytochrome P450 2D6; mo 99.9 2.9E-27 1E-31 178.3 13.2 162 3-167 9-176 (479)
8 3k9v_A 1,25-dihydroxyvitamin D 99.9 4.4E-27 1.5E-31 177.5 12.9 161 2-165 22-193 (482)
9 2hi4_A Cytochrome P450 1A2; CY 99.9 1.1E-26 3.8E-31 176.2 12.7 163 2-166 12-187 (495)
10 3s79_A Cytochrome P450 19A1; o 99.9 4.1E-27 1.4E-31 178.6 10.1 162 2-166 43-210 (503)
11 3czh_A Cytochrome P450 2R1; vi 99.9 9.5E-27 3.3E-31 176.0 11.2 160 2-165 10-175 (481)
12 1r9o_A Cytochrome P450 2C9; mo 99.9 5.7E-27 2E-31 176.9 8.4 160 2-166 9-172 (477)
13 3gw9_A Sterol 14alpha-demethyl 99.9 4.5E-27 1.5E-31 176.1 7.4 158 2-165 1-162 (450)
14 3ld6_A Lanosterol 14-alpha dem 99.9 3E-27 1E-31 177.8 5.6 156 5-166 12-169 (461)
15 2ij2_A Cytochrome P450 BM3; mo 99.9 4.5E-25 1.5E-29 166.4 14.9 158 4-166 3-164 (470)
16 2ve3_A Putative cytochrome P45 99.9 2.9E-25 9.9E-30 166.4 11.0 152 1-161 9-161 (444)
17 3i3k_A Lanosterol 14-alpha dem 99.9 6.8E-26 2.3E-30 170.3 6.7 158 2-165 9-168 (461)
18 3n9y_A Cholesterol SIDE-chain 99.9 1.3E-24 4.3E-29 164.4 12.2 161 2-166 7-181 (487)
19 2cib_A Cytochrome P450 51; hem 99.9 4E-25 1.4E-29 166.1 8.5 155 3-166 3-159 (455)
20 3qz1_A Steroid 21-hydroxylase; 99.9 3.4E-25 1.2E-29 167.8 7.4 152 2-162 27-180 (496)
21 3dbg_A Putative cytochrome P45 99.9 2.7E-25 9.1E-30 167.5 5.8 153 3-166 22-177 (467)
22 2cd8_A Cytochrome P450 monooxy 99.9 1.6E-24 5.6E-29 162.0 8.2 157 1-165 23-186 (436)
23 3v8d_A Cholesterol 7-alpha-mon 99.9 1E-24 3.4E-29 165.2 5.2 162 1-166 10-177 (491)
24 1n97_A CYP175A1; electron tran 99.9 7.9E-24 2.7E-28 156.2 5.2 146 8-165 3-150 (389)
25 1jfb_A Nitric-oxide reductase 99.9 1.5E-22 5.2E-27 150.0 11.9 156 5-166 2-164 (404)
26 3awm_A Fatty acid alpha-hydrox 99.9 3.9E-22 1.3E-26 148.2 10.8 150 6-167 4-156 (415)
27 1izo_A P450bsbeta, cytochrome 99.9 3.2E-22 1.1E-26 148.8 9.6 146 12-167 8-157 (417)
28 3dsk_A Cytochrome P450 74A, ch 99.9 1.6E-22 5.3E-27 153.3 6.6 163 2-167 26-206 (495)
29 3mdm_A Cholesterol 24-hydroxyl 99.9 5.9E-21 2E-25 143.3 13.3 139 23-166 10-155 (456)
30 3dax_A Cytochrome P450 7A1; ch 99.9 5.8E-22 2E-26 149.9 7.3 160 2-166 11-177 (491)
31 1ued_A P450 OXYC, P450 monooxy 99.9 3.2E-21 1.1E-25 143.0 11.0 150 2-165 8-170 (406)
32 2zbx_A Cytochrome P450-SU1; be 99.8 1.5E-20 5.2E-25 139.6 11.3 155 2-165 3-168 (412)
33 3dan_A Cytochrome P450 74A2; A 99.8 4.8E-21 1.6E-25 144.3 8.1 162 2-166 7-187 (473)
34 3b6h_A Prostacyclin synthase; 99.8 3E-20 1E-24 140.9 10.7 158 2-166 16-177 (498)
35 3ivy_A Cytochrome P450 CYP125; 99.8 1.5E-19 5E-24 135.2 12.4 152 4-164 18-187 (433)
36 1cpt_A Cytochrome P450-TERP; o 99.8 1.9E-20 6.6E-25 139.7 7.6 153 1-166 3-176 (428)
37 1s1f_A Putative cytochrome P45 99.8 5.1E-20 1.7E-24 136.6 9.7 151 4-166 8-167 (406)
38 2zwu_A Camphor 5-monooxygenase 99.8 9.2E-20 3.2E-24 135.6 9.6 153 2-166 9-174 (415)
39 3b98_A Prostaglandin I2 syntha 99.8 4.3E-20 1.5E-24 139.2 5.6 154 2-163 16-174 (475)
40 3abb_A CYP105D6, cytochrome P4 99.8 5E-19 1.7E-23 131.3 11.2 137 20-165 21-167 (408)
41 3oo3_A OXY protein; cytochrome 99.8 4E-19 1.4E-23 130.8 9.9 139 21-166 10-153 (384)
42 3tyw_A Putative cytochrome P45 99.8 1.9E-18 6.5E-23 128.5 11.8 137 21-166 27-173 (417)
43 3aba_A Cytochrome P450; oxidor 99.8 1E-18 3.4E-23 129.5 10.0 136 21-165 17-160 (403)
44 2xbk_A PIMD protein; epoxidati 99.8 1E-17 3.4E-22 124.2 12.1 135 21-165 24-170 (404)
45 3a4g_A Vitamin D hydroxylase; 99.8 2.8E-18 9.7E-23 127.4 8.7 135 21-165 18-159 (411)
46 1odo_A Putative cytochrome P45 99.8 5.6E-18 1.9E-22 125.7 10.2 139 20-165 12-162 (408)
47 1z8o_A 6-deoxyerythronolide B 99.7 7E-18 2.4E-22 125.0 10.2 135 21-165 12-162 (404)
48 2wm5_A CYP124, putative cytoch 99.7 5.6E-18 1.9E-22 126.7 9.7 138 23-166 44-193 (435)
49 2y5n_A MYCG, P-450-like protei 99.7 8.2E-18 2.8E-22 125.2 9.9 136 21-165 35-176 (417)
50 3ejb_B Biotin biosynthesis cyt 99.7 6.7E-18 2.3E-22 125.0 9.1 135 22-165 12-152 (404)
51 2z36_A MOXA, cytochrome P450 t 99.7 1.8E-17 6.2E-22 123.2 10.6 137 21-165 20-169 (413)
52 2dkk_A Cytochrome P450; CYP158 99.7 1.6E-17 5.3E-22 123.4 9.9 134 23-165 27-169 (411)
53 3tkt_A Cytochrome P450; aromat 99.7 1.4E-17 4.7E-22 125.1 9.2 133 25-165 47-197 (450)
54 4fb2_A P450CIN; heme, monooxyg 99.7 3.5E-18 1.2E-22 126.4 5.7 137 20-165 16-156 (398)
55 2z3t_A Cytochrome P450; monoxy 99.7 4.2E-17 1.4E-21 121.6 10.7 133 23-165 20-170 (425)
56 1gwi_A CYP154C1, cytochrome P4 99.7 2.9E-17 9.8E-22 122.0 9.4 137 20-165 14-165 (411)
57 2uuq_A CYP130, cytochrome P450 99.7 3.5E-17 1.2E-21 121.6 9.6 132 23-165 25-168 (414)
58 2jjn_A Cytochrome P450 113A1; 99.7 1.7E-17 5.7E-22 123.2 7.8 129 23-166 28-158 (411)
59 2xkr_A CYP142, putative cytoch 99.7 3.9E-17 1.3E-21 120.8 6.8 130 22-166 17-148 (398)
60 1q5d_A P450 epoxidase; cytochr 99.7 2.1E-17 7.3E-22 123.0 5.3 134 21-166 24-168 (419)
61 3mgx_A Putative P450 monooxyge 99.7 1.9E-17 6.5E-22 123.1 4.3 134 23-165 37-178 (415)
62 3lxh_A Cytochrome P450; heme, 99.7 1.5E-16 5.2E-21 118.4 8.8 135 22-165 37-174 (421)
63 3r9b_A Cytochrome P450 164A2; 99.7 2E-16 6.7E-21 117.7 9.3 133 21-166 27-169 (418)
64 3oft_A Cytochrome P450, CYP101 99.7 2E-16 6.7E-21 116.9 8.0 136 20-165 21-158 (396)
65 3buj_A CALO2; heme, iron, meta 99.7 2.6E-16 9E-21 116.3 8.0 131 23-166 13-152 (397)
66 1lfk_A OXYB, P450 monooxygenas 99.6 1.9E-16 6.4E-21 117.2 6.6 130 28-165 18-161 (398)
67 1io7_A Cytochrome P450 CYP119; 99.6 4.3E-16 1.5E-20 114.1 8.2 128 25-166 1-140 (368)
68 1n40_A P450 MT2, cytochrome P4 99.6 9.5E-17 3.3E-21 118.7 3.9 132 21-165 14-155 (396)
69 3rwl_A Cytochrome P450 alkane 99.6 1.8E-15 6.2E-20 112.8 9.6 134 23-165 38-183 (426)
70 3nc3_A Cytochrome P450 CYPX; c 99.6 8.9E-17 3.1E-21 120.4 1.2 132 23-166 53-186 (441)
71 2rfb_A Cytochrome P450; heme, 99.6 2.3E-15 8E-20 109.2 5.2 113 34-165 2-116 (343)
72 2wiy_A XPLA-heme, cytochrome P 99.6 6E-15 2E-19 109.0 7.4 132 23-166 20-152 (394)
73 3b4x_A 367AA long hypothetical 99.5 9.2E-15 3.1E-19 107.0 7.1 122 25-163 1-134 (367)
74 4dnj_A Putative cytochrome P45 99.5 4.6E-14 1.6E-18 104.9 8.1 144 10-161 18-169 (412)
75 3p3o_A Cytochrome P450; monoox 99.5 9.9E-15 3.4E-19 108.5 3.5 131 22-165 32-171 (416)
76 4dxy_A Cytochrome P450, CYP101 99.3 8.2E-12 2.8E-16 92.9 7.9 133 23-164 37-172 (417)
77 2yjn_B Erycii, DTDP-4-keto-6-d 98.8 8.4E-12 2.9E-16 91.6 -8.7 133 5-166 35-181 (381)
78 1s79_A Lupus LA protein; RRM, 82.1 5.4 0.00019 23.0 6.7 48 14-63 15-71 (103)
79 3lqv_A PRE-mRNA branch site pr 79.1 7.3 0.00025 22.6 7.9 57 4-62 2-65 (115)
80 1iqt_A AUF1, heterogeneous nuc 77.2 6.1 0.00021 20.7 5.5 48 15-64 4-61 (75)
81 3d2w_A TAR DNA-binding protein 74.7 8.8 0.0003 21.3 5.8 50 10-61 11-65 (89)
82 2krb_A Eukaryotic translation 72.0 9.4 0.00032 20.5 7.2 50 14-63 5-66 (81)
83 2diu_A KIAA0430 protein; struc 70.9 13 0.00043 21.4 5.6 57 14-72 13-75 (96)
84 3beg_B Splicing factor, argini 69.1 15 0.0005 21.5 6.3 48 14-63 20-70 (115)
85 2mss_A Protein (musashi1); RNA 68.3 11 0.00038 19.7 6.0 47 15-63 4-60 (75)
86 3s7r_A Heterogeneous nuclear r 64.9 15 0.0005 19.9 5.2 49 14-64 15-73 (87)
87 4f25_A Polyadenylate-binding p 61.6 21 0.00073 20.7 6.1 48 14-63 9-64 (115)
88 2cqc_A Arginine/serine-rich sp 60.6 19 0.00065 19.8 7.0 50 12-63 17-76 (95)
89 1x4c_A Splicing factor, argini 58.8 23 0.00079 20.2 8.0 48 14-63 19-69 (108)
90 2nlw_A Eukaryotic translation 58.2 23 0.0008 20.1 7.4 51 13-63 18-80 (105)
91 2dnh_A Bruno-like 5, RNA bindi 57.0 24 0.00082 19.8 5.8 48 14-63 19-75 (105)
92 2jwn_A Embryonic polyadenylate 55.3 29 0.00099 20.3 5.6 46 14-61 40-95 (124)
93 4fxv_A ELAV-like protein 1; RN 55.2 26 0.00089 19.7 6.1 48 14-63 23-80 (99)
94 1whx_A Hypothetical protein ri 54.9 28 0.00097 20.0 6.5 55 14-70 14-73 (111)
95 2jvr_A Nucleolar protein 3; RN 54.3 30 0.001 20.2 6.1 48 14-63 32-86 (111)
96 2cpi_A CCR4-NOT transcription 53.8 20 0.00068 20.6 3.9 48 14-63 19-82 (111)
97 1whv_A Poly(A)-specific ribonu 53.4 15 0.00051 21.3 3.0 37 26-62 29-67 (100)
98 2cq4_A RNA binding motif prote 53.0 30 0.001 19.8 5.7 50 14-65 29-88 (114)
99 2cqb_A Peptidyl-prolyl CIS-tra 52.9 28 0.00096 19.4 4.7 49 13-63 15-73 (102)
100 1x4b_A Heterogeneous nuclear r 52.7 28 0.00096 20.0 4.5 48 14-63 31-88 (116)
101 1x4e_A RNA binding motif, sing 52.4 25 0.00087 18.8 5.2 49 12-62 7-65 (85)
102 3zzy_A Polypyrimidine tract-bi 52.0 37 0.0013 20.6 5.8 48 14-63 32-85 (130)
103 1p27_B RNA-binding protein 8A; 51.8 30 0.001 19.4 6.9 48 14-63 27-84 (106)
104 2cpf_A RNA binding motif prote 51.7 29 0.00098 19.2 6.1 49 13-63 8-69 (98)
105 2wbr_A GW182, gawky, LD47780P; 51.6 31 0.0011 19.5 7.5 49 12-62 9-61 (89)
106 2dgu_A Heterogeneous nuclear r 51.3 31 0.001 19.4 6.6 49 13-63 14-64 (103)
107 2voo_A Lupus LA protein; RNA-b 50.8 44 0.0015 21.6 5.5 48 14-63 113-169 (193)
108 2err_A Ataxin-2-binding protei 50.5 33 0.0011 19.6 4.7 48 14-63 33-88 (109)
109 2kxn_B Transformer-2 protein h 50.4 38 0.0013 20.2 7.7 50 12-63 48-107 (129)
110 1sjr_A Polypyrimidine tract-bi 50.2 46 0.0016 21.1 7.0 47 15-63 51-103 (164)
111 1oo0_B CG8781-PA, drosophila Y 50.0 34 0.0011 19.4 6.8 47 14-62 30-86 (110)
112 2fy1_A RNA-binding motif prote 49.9 36 0.0012 19.8 5.5 48 14-63 11-67 (116)
113 2d9p_A Polyadenylate-binding p 49.1 33 0.0011 19.1 6.3 50 12-63 17-74 (103)
114 1sjq_A Polypyrimidine tract-bi 49.0 37 0.0013 19.7 6.8 49 12-62 18-70 (105)
115 2cqi_A Nucleolysin TIAR; RNA r 48.2 35 0.0012 19.1 6.4 47 14-62 19-73 (103)
116 2xs2_A Deleted in azoospermia- 48.2 27 0.00092 19.5 3.8 47 14-62 13-68 (102)
117 2hvz_A Splicing factor, argini 47.4 35 0.0012 18.9 6.1 47 14-62 4-55 (101)
118 1whw_A Hypothetical protein ri 47.2 35 0.0012 18.8 6.8 48 14-63 12-69 (99)
119 2p22_C Protein SRN2; endosome, 46.6 59 0.002 21.3 6.3 58 93-151 110-168 (192)
120 1x4f_A Matrin 3; structural ge 45.7 44 0.0015 19.6 4.8 50 12-62 27-80 (112)
121 2rs2_A Musashi-1, RNA-binding 45.5 41 0.0014 19.2 5.7 49 14-64 29-87 (109)
122 2ad9_A Polypyrimidine tract-bi 45.3 46 0.0016 19.7 6.1 49 12-62 33-85 (119)
123 2dhg_A TRNA selenocysteine ass 45.3 39 0.0013 18.9 7.4 54 8-63 7-70 (104)
124 1p1t_A Cleavage stimulation fa 44.7 40 0.0014 18.8 5.2 48 14-63 12-69 (104)
125 2ywk_A Putative RNA-binding pr 44.7 38 0.0013 18.5 5.9 47 14-62 20-75 (95)
126 2cjk_A Nuclear polyadenylated 44.4 52 0.0018 20.0 5.9 48 14-63 91-148 (167)
127 2khc_A Testis-specific RNP-typ 44.0 45 0.0015 19.2 4.8 48 14-63 44-101 (118)
128 1l3k_A Heterogeneous nuclear r 43.9 58 0.002 20.5 6.0 50 14-65 17-76 (196)
129 3s8s_A Histone-lysine N-methyl 43.8 45 0.0016 19.2 6.1 49 13-63 9-67 (110)
130 1uaw_A Mouse-musashi-1; RNP-ty 43.3 35 0.0012 17.7 5.0 49 14-64 4-62 (77)
131 2cq0_A Eukaryotic translation 43.2 29 0.001 19.4 3.4 48 14-63 19-76 (103)
132 1nu4_A U1A RNA binding domain; 43.1 41 0.0014 18.4 6.5 51 13-63 11-70 (97)
133 1u6f_A Tcubp1, RNA-binding pro 42.8 52 0.0018 19.6 6.2 48 14-63 46-103 (139)
134 3pgw_S U1-70K; protein-RNA com 42.6 99 0.0034 23.0 6.9 49 13-63 105-163 (437)
135 1x4g_A Nucleolysin TIAR; struc 42.5 46 0.0016 18.8 6.9 48 14-63 29-80 (109)
136 1wf0_A TDP-43, TAR DNA-binding 42.3 40 0.0014 18.2 3.8 46 14-61 9-59 (88)
137 2cq1_A PTB-like protein L; RRM 41.6 48 0.0016 18.8 6.2 49 12-62 17-69 (101)
138 2dgo_A Cytotoxic granule-assoc 41.3 49 0.0017 18.9 6.1 48 14-63 19-76 (115)
139 1rk8_A CG8781-PA, CG8781-PA pr 41.1 63 0.0021 20.0 6.4 48 14-63 76-133 (165)
140 2la6_A RNA-binding protein FUS 41.0 46 0.0016 18.4 7.0 47 14-62 17-81 (99)
141 2dgx_A KIAA0430 protein; RRM d 40.7 46 0.0016 18.3 6.5 49 14-62 13-70 (96)
142 1x4h_A RNA-binding protein 28; 40.4 49 0.0017 18.6 8.5 50 12-63 17-76 (111)
143 3ex7_B RNA-binding protein 8A; 40.1 55 0.0019 19.1 6.9 53 14-68 26-89 (126)
144 4f02_A Polyadenylate-binding p 39.8 75 0.0026 20.6 6.1 48 14-63 19-76 (213)
145 3md1_A Nuclear and cytoplasmic 39.3 43 0.0015 17.6 5.7 47 15-63 6-62 (83)
146 2jvo_A Nucleolar protein 3; nu 39.3 53 0.0018 18.7 5.7 48 14-63 35-84 (108)
147 3ctr_A Poly(A)-specific ribonu 39.2 13 0.00043 21.6 1.3 38 26-63 19-58 (101)
148 2ghp_A U4/U6 snRNA-associated 39.2 76 0.0026 21.7 5.6 53 14-68 45-105 (292)
149 3md3_A Nuclear and cytoplasmic 39.0 64 0.0022 19.5 5.9 47 14-62 4-59 (166)
150 3s6e_A RNA-binding protein 39; 39.0 58 0.002 19.0 4.5 66 5-70 2-82 (114)
151 3n9u_C Cleavage and polyadenyl 38.7 69 0.0024 19.8 6.3 47 15-63 60-118 (156)
152 2cq3_A RNA-binding protein 9; 38.1 53 0.0018 18.3 7.5 48 14-63 19-74 (103)
153 2dnz_A Probable RNA-binding pr 37.9 50 0.0017 18.0 7.6 48 13-62 8-65 (95)
154 1wi8_A EIF-4B, eukaryotic tran 37.8 54 0.0018 18.3 6.0 46 13-61 18-74 (104)
155 3ucg_A Polyadenylate-binding p 37.8 48 0.0016 17.7 5.7 47 14-62 10-66 (89)
156 2do0_A HnRNP M, heterogeneous 37.3 58 0.002 18.5 5.8 48 13-62 18-74 (114)
157 3ulh_A THO complex subunit 4; 37.2 55 0.0019 18.3 6.4 48 14-63 33-89 (107)
158 2cqd_A RNA-binding region cont 37.1 59 0.002 18.6 6.5 48 14-63 21-78 (116)
159 2la4_A Nuclear and cytoplasmic 36.6 55 0.0019 18.1 5.9 48 14-63 31-82 (101)
160 1x5u_A Splicing factor 3B subu 36.3 57 0.002 18.2 8.5 48 14-63 19-76 (105)
161 2dis_A Unnamed protein product 36.1 59 0.002 18.3 6.5 48 14-63 12-71 (109)
162 2dnm_A SRP46 splicing factor; 36.0 57 0.002 18.1 7.1 48 14-63 17-74 (103)
163 3bs9_A Nucleolysin TIA-1 isofo 35.9 51 0.0018 17.5 5.7 48 14-63 10-67 (87)
164 1x5s_A Cold-inducible RNA-bind 35.4 58 0.002 18.0 7.1 49 13-63 15-73 (102)
165 1h2v_Z 20 kDa nuclear CAP bind 34.5 79 0.0027 19.3 6.1 48 14-63 43-100 (156)
166 2do4_A Squamous cell carcinoma 34.5 60 0.0021 17.9 7.3 48 14-63 21-77 (100)
167 2jrs_A RNA-binding protein 39; 34.3 66 0.0022 18.3 6.3 47 14-62 30-86 (108)
168 2dha_A FLJ20171 protein; RRM d 33.9 67 0.0023 19.0 4.0 49 14-64 27-88 (123)
169 2qfj_A FBP-interacting repress 33.7 93 0.0032 19.8 7.7 47 14-62 32-88 (216)
170 2pe8_A Splicing factor 45; RRM 33.2 70 0.0024 18.2 5.3 62 8-69 6-82 (105)
171 1x5t_A Splicing factor 3B subu 33.1 62 0.0021 17.6 5.0 47 14-62 9-66 (96)
172 3tyt_A Heterogeneous nuclear r 33.0 1E+02 0.0034 20.0 6.4 49 13-62 7-60 (205)
173 2d9o_A DNAJ (HSP40) homolog, s 32.6 71 0.0024 18.1 5.4 38 26-63 31-73 (100)
174 2dnq_A RNA-binding protein 4B; 32.6 62 0.0021 17.4 6.7 47 14-62 12-60 (90)
175 1wf1_A RNA-binding protein RAL 32.0 72 0.0025 18.0 6.8 48 14-63 31-81 (110)
176 1x5o_A RNA binding motif, sing 31.7 73 0.0025 18.1 4.7 48 14-63 29-85 (114)
177 1wg5_A Heterogeneous nuclear r 31.6 71 0.0024 17.9 6.9 54 14-69 19-82 (104)
178 2dnr_A Synaptojanin-1; RRM dom 31.6 73 0.0025 18.0 4.4 36 27-62 30-67 (91)
179 2f3j_A RNA and export factor b 31.4 1E+02 0.0034 19.5 6.7 48 14-63 92-148 (177)
180 4a8x_A RNA-binding protein wit 31.3 63 0.0021 17.1 6.8 48 14-63 8-66 (88)
181 3euj_B Chromosome partition pr 31.3 94 0.0032 19.2 4.2 39 109-150 57-95 (152)
182 2dgv_A HnRNP M, heterogeneous 31.3 65 0.0022 17.3 7.5 48 14-63 12-67 (92)
183 3r27_A HnRNP L, heterogeneous 29.9 81 0.0028 18.0 7.1 51 10-62 21-75 (100)
184 2dnp_A RNA-binding protein 14; 29.8 70 0.0024 17.2 7.7 50 12-63 11-62 (90)
185 2dh8_A DAZ-associated protein 29.4 77 0.0026 17.6 6.3 50 14-65 20-79 (105)
186 1fxl_A Paraneoplastic encephal 29.4 96 0.0033 18.7 6.1 48 14-63 6-63 (167)
187 3mdf_A Peptidyl-prolyl CIS-tra 29.4 67 0.0023 16.9 7.4 49 13-63 10-68 (85)
188 1x4a_A Splicing factor, argini 28.7 82 0.0028 17.7 7.7 47 14-62 26-79 (109)
189 2bz2_A Negative elongation fac 28.7 92 0.0031 18.2 5.9 46 14-63 43-92 (121)
190 2dgs_A DAZ-associated protein 28.6 78 0.0027 17.4 7.9 53 14-68 14-76 (99)
191 1x4d_A Matrin 3; structural ge 28.6 86 0.0029 17.8 5.7 54 8-62 13-70 (102)
192 2div_A TRNA selenocysteine ass 28.5 78 0.0027 17.3 5.8 49 13-63 12-71 (99)
193 3nmr_A Cugbp ELAV-like family 28.0 1.1E+02 0.0036 18.7 5.8 48 14-63 99-155 (175)
194 2ki2_A SS-DNA binding protein 27.7 76 0.0026 17.0 4.3 47 14-63 5-61 (90)
195 2hgn_A Heterogeneous nuclear r 27.6 94 0.0032 18.9 4.0 55 14-71 50-113 (139)
196 1b7f_A Protein (SXL-lethal pro 27.5 1.1E+02 0.0036 18.5 6.8 47 14-62 7-63 (168)
197 2dgt_A RNA-binding protein 30; 27.3 79 0.0027 17.0 7.0 48 14-63 14-63 (92)
198 1b35_D CRPV, protein (cricket 27.3 28 0.00096 17.1 1.2 10 11-20 30-39 (57)
199 3p5t_L Cleavage and polyadenyl 27.2 80 0.0027 17.0 4.7 47 14-62 5-63 (90)
200 2e5h_A Zinc finger CCHC-type a 27.1 80 0.0027 17.0 7.0 49 13-63 19-77 (94)
201 1wex_A Hypothetical protein (r 27.1 92 0.0031 17.7 7.1 49 12-62 17-69 (104)
202 2cpd_A Apobec-1 stimulating pr 27.1 84 0.0029 17.2 6.8 47 14-62 19-69 (99)
203 3ezq_A Tumor necrosis factor r 26.7 1.1E+02 0.0036 18.2 5.6 41 94-134 18-62 (115)
204 1x5p_A Negative elongation fac 26.7 85 0.0029 17.2 7.2 46 14-63 19-68 (97)
205 2x1f_A MRNA 3'-END-processing 26.6 84 0.0029 17.1 6.9 48 14-63 6-63 (96)
206 3cra_A Protein MAZG; tandem-re 26.4 95 0.0032 21.5 4.1 41 116-160 34-74 (265)
207 3q2s_C Cleavage and polyadenyl 25.9 1.1E+02 0.0039 20.2 4.5 47 14-62 72-130 (229)
208 2huj_A LIN2004 protein; hypoth 25.1 78 0.0027 19.5 3.2 41 108-148 17-57 (140)
209 1wel_A RNA-binding protein 12; 24.5 94 0.0032 18.0 3.5 47 14-62 29-85 (124)
210 2a3j_A U1 small nuclear ribonu 24.3 1.2E+02 0.004 18.0 5.9 50 14-63 33-91 (127)
211 2e44_A Insulin-like growth fac 23.9 96 0.0033 16.8 6.3 48 13-62 18-72 (96)
212 3oq9_A Tumor necrosis factor r 23.6 1E+02 0.0036 17.1 4.7 40 95-134 11-54 (86)
213 2kn4_A Immunoglobulin G-bindin 23.5 1.3E+02 0.0044 18.2 7.6 48 14-63 74-131 (158)
214 2lea_A Serine/arginine-rich sp 23.5 1.2E+02 0.0043 18.0 5.8 48 14-63 51-108 (135)
215 2dgp_A Bruno-like 4, RNA bindi 23.0 1.1E+02 0.0036 17.0 7.0 47 14-62 17-73 (106)
216 2cpx_A Hypothetical protein FL 22.9 1.1E+02 0.0038 17.2 5.9 49 13-63 28-86 (115)
217 2cph_A RNA binding motif prote 22.7 1.1E+02 0.0037 17.0 8.9 48 14-63 19-77 (107)
218 1ufw_A Synaptojanin 2; RNP dom 22.6 1.2E+02 0.004 17.3 4.3 38 27-64 39-78 (95)
219 2j76_E EIF-4B, EIF4B, eukaryot 22.4 1.1E+02 0.0037 16.9 4.8 49 14-65 23-82 (100)
220 2i2y_A Fusion protein consists 21.9 1.4E+02 0.0047 17.9 8.8 48 14-63 77-129 (150)
221 3v4m_A Splicing factor U2AF 65 21.7 1.2E+02 0.0041 17.2 5.5 44 27-70 30-86 (105)
222 3fgx_A Rbstp2171; structural g 21.7 62 0.0021 19.2 2.1 16 29-44 10-25 (114)
223 2cpj_A Non-POU domain-containi 21.5 1.1E+02 0.0038 16.7 5.5 48 14-63 19-70 (99)
224 2ek1_A RNA-binding protein 12; 21.3 95 0.0032 16.7 3.0 48 14-63 19-76 (95)
225 2kvi_A Nuclear polyadenylated 21.1 1.1E+02 0.0039 16.6 6.0 49 14-63 14-64 (96)
226 2e5i_A Heterogeneous nuclear r 21.0 1.4E+02 0.0048 17.7 6.2 46 15-62 30-80 (124)
227 2ytc_A PRE-mRNA-splicing facto 20.7 1.1E+02 0.0036 16.1 7.6 48 14-63 16-67 (85)
228 2lxi_A RNA-binding protein 10; 20.5 1.2E+02 0.004 16.5 4.9 47 15-63 6-63 (91)
229 2cqp_A RNA-binding protein 12; 20.5 97 0.0033 16.8 2.9 48 14-63 19-76 (98)
230 2cpz_A CUG triplet repeat RNA- 20.5 1.3E+02 0.0044 17.0 6.6 48 14-63 29-86 (115)
231 2dng_A Eukaryotic translation 20.2 1.2E+02 0.0042 16.7 5.3 47 12-61 17-73 (103)
232 3ns6_A Eukaryotic translation 20.1 1.2E+02 0.0042 16.7 5.8 49 14-62 10-72 (100)
233 2cpe_A RNA-binding protein EWS 20.1 1.3E+02 0.0044 16.9 4.4 48 14-63 19-84 (113)
No 1
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=99.96 E-value=5.8e-29 Score=188.51 Aligned_cols=162 Identities=24% Similarity=0.352 Sum_probs=136.3
Q ss_pred CCCCCCCCCCCceecccccCC--CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhh
Q 036759 2 RKILPPGPKGFPIVGCLHLLG--KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATK 78 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~--~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~ 78 (176)
..+.||||+++|++||++.+. +.++..+.+|+++|||||++++|+.++++++||++++ +|.++...|.+++......
T Consensus 6 ~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~~k~il~~~~~~f~~rp~~~~~~ 85 (494)
T 3swz_A 6 GAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKDFSGRPQMATLD 85 (494)
T ss_dssp ------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTBBCCCCHHHH
T ss_pred CCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCCCEEEECCHHHHHHHHHhCcHhhCCCCCcHHHH
Confidence 456899999999999998875 3578899999999999999999999999999999999 9998888899888765555
Q ss_pred HHhhcCcceEecCCChhHHHHHhhhhhhcCCh--HHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhh
Q 036759 79 YISYQQKNFAMAPYGSYWRKIRKLCTQNLLTN--AKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTC 156 (176)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 156 (176)
.....+.+++++++|+.|+.+|+++. ++|+. ..+..+.+.+.+++..+++.+.+. .+.++|+..++..+++|+|+
T Consensus 86 ~~~~~~~gl~~~~~g~~wr~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~t~dvi~ 162 (494)
T 3swz_A 86 IASNNRKGIAFADSGAHWQLHRRLAM-ATFALFKDGDQKLEKIICQEISTLCDMLATH--NGQSIDISFPVFVAVTNVIS 162 (494)
T ss_dssp HHTTTTCSSSSSCSSHHHHHHHHHHH-HHTTTTSSSTTCHHHHHHHHHHHHHHHHHHT--TTEEECCHHHHHHHHHHHHH
T ss_pred HhccCCCCeEeCCCCHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHc--CCCcccHHHHHHHHHHHHHH
Confidence 55544567777767999999999998 98874 456789999999999999999764 56789999999999999999
Q ss_pred hhhccccCCC
Q 036759 157 RMVLGKKRSD 166 (176)
Q Consensus 157 ~~~fG~~~~~ 166 (176)
.++||.+++.
T Consensus 163 ~~~fG~~~~~ 172 (494)
T 3swz_A 163 LICFNTSYKN 172 (494)
T ss_dssp HHHHSCCCCT
T ss_pred HHHcCCcCCC
Confidence 9999998864
No 2
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=99.96 E-value=3.6e-29 Score=189.16 Aligned_cols=159 Identities=19% Similarity=0.319 Sum_probs=137.4
Q ss_pred CCCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhC-CccccCCCchhhhhHH
Q 036759 3 KILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTH-DLIFASRPPLQATKYI 80 (176)
Q Consensus 3 ~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~-~~~~~~~~~~~~~~~~ 80 (176)
++.||||+++|++||++.+.++++.++.+|+++|||||++++++.++|+++||++++ ||.++ ...+.+++......
T Consensus 13 ~~~~PGP~~~PliGn~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~~f~~r~~~~~~~-- 90 (485)
T 3nxu_A 13 KLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG-- 90 (485)
T ss_dssp HHTCCCCCCBTTTBTGGGGGGCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTTTTTTTCCCCCCCSCCG--
T ss_pred hCCCCCCCCcCeecCcHHhhcChHHHHHHHHHHcCCeEEEEeCCCCEEEECCHHHHHHHHhccchhhccCCccccccc--
Confidence 356899999999999999888899999999999999999999999999999999999 99876 45666665432222
Q ss_pred hhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhc
Q 036759 81 SYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVL 160 (176)
Q Consensus 81 ~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~f 160 (176)
..+.++++.+ |+.|+++|++++ ++|++++++.+.+.+.++++.+++.+.+....+.++|+.+++..+++|+|+.++|
T Consensus 91 -~~~~~l~~~~-g~~w~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~g~~~d~~~~~~~~~~dvi~~~~f 167 (485)
T 3nxu_A 91 -FMKSAISIAE-DEEWKRLRSLLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSF 167 (485)
T ss_dssp -GGGGSTTTCC-HHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEHHHHHHHHHHHHHHHHHH
T ss_pred -ccccCccccC-CcHHHHHHhhcC-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcHHHHHHHHHHHHHHHHHc
Confidence 1234565565 999999999998 9999999999999999999999999987554567899999999999999999999
Q ss_pred cccCCC
Q 036759 161 GKKRSD 166 (176)
Q Consensus 161 G~~~~~ 166 (176)
|.+++.
T Consensus 168 G~~~~~ 173 (485)
T 3nxu_A 168 GVNIDS 173 (485)
T ss_dssp SCCCCG
T ss_pred CCcccc
Confidence 999874
No 3
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=99.96 E-value=6.6e-29 Score=188.55 Aligned_cols=164 Identities=22% Similarity=0.394 Sum_probs=120.3
Q ss_pred CCCCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHH
Q 036759 2 RKILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYI 80 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~ 80 (176)
+.+.||||+++|++||++.+.++++..+.+|+++||+||++++++.++++++||++++ ||.++...|.+++........
T Consensus 7 ~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~~~~~~~ 86 (507)
T 3pm0_A 7 SKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPSFASFRVV 86 (507)
T ss_dssp ---------------------CCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTSCBCCCCHHHHHG
T ss_pred CCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCcchHHHhh
Confidence 4678999999999999999888999999999999999999999999999999999999 998887888888765544433
Q ss_pred hhcCcceEecCCChhHHHHHhhhhhhcCChHHH------hhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhh
Q 036759 81 SYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKI------NYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANM 154 (176)
Q Consensus 81 ~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l------~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 154 (176)
. .+.+++++.+|+.|+.+|+++. +.|+.... +.+.+.+.++++.+++.+.+....+.++|+.+++..+++|+
T Consensus 87 ~-~g~~l~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dv 164 (507)
T 3pm0_A 87 S-GGRSMAFGHYSEHWKVQRRAAH-SMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDPRPLTVVAVANV 164 (507)
T ss_dssp G-GGTCSSSSCSSHHHHHHHHHHH-HHHHHSTTSSTTHHHHHHHHHHHHHHHHHHHHHHTTGGGCCBCCHHHHHHHHHHH
T ss_pred c-CCCceEECCCChHHHHHHHHHH-HHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHhhcccCCCcChHHHHHHHHHHH
Confidence 3 3457766666999999999998 86654332 34889999999999999987654567899999999999999
Q ss_pred hhhhhccccCCCc
Q 036759 155 TCRMVLGKKRSDD 167 (176)
Q Consensus 155 i~~~~fG~~~~~~ 167 (176)
++.++||.+++..
T Consensus 165 i~~~~fG~~~~~~ 177 (507)
T 3pm0_A 165 MSAVCFGCRYSHD 177 (507)
T ss_dssp HHHHHTSCCCCTT
T ss_pred HHHHHccccCCCC
Confidence 9999999998743
No 4
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=99.95 E-value=1.6e-27 Score=179.64 Aligned_cols=160 Identities=23% Similarity=0.375 Sum_probs=132.5
Q ss_pred CCCCCCCCCCCceecccccC-CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKGFPIVGCLHLL-GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.++||||+++|++||++.+ ..+++..+.+|+++||+||++++++.++++++||++++ ||.++...|.+++.......
T Consensus 8 ~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~~~~v~~il~~~~~~f~~r~~~~~~~~ 87 (476)
T 3e6i_A 8 KGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVKEALLDYKDEFSGRGDLPAFHA 87 (476)
T ss_dssp --CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTSTTTTCEECCCGGGGG
T ss_pred CCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcchHhhCCCCCCchhhe
Confidence 45789999999999999988 46889999999999999999999999999999999999 99887777877765444333
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChHHH--hhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKI--NYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
.. +.++++++ |+.|+++|+++. +.|+...+ ..+.+.+.++++.+++.+.+. .+.++|+..++..+++++|++
T Consensus 88 ~~--~~~l~~~~-g~~w~~~Rr~~~-~~l~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~dvi~~ 161 (476)
T 3e6i_A 88 HR--DRGIIFNN-GPTWKDIRRFSL-TTLRNYGMGKQGNESRIQREAHFLLEALRKT--QGQPFDPTFLIGCAPCNVIAD 161 (476)
T ss_dssp GT--TSSSTTCC-STTHHHHHHHHH-HHHHHTC-CCSHHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHTHHHHHHHHH
T ss_pred ec--CCCEEecC-CcHHHHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHHHHHHHh--CCCCcChHHHHHHHHHHHHHH
Confidence 32 22676666 999999999887 77665433 346789999999999999764 457899999999999999999
Q ss_pred hhccccCCCc
Q 036759 158 MVLGKKRSDD 167 (176)
Q Consensus 158 ~~fG~~~~~~ 167 (176)
++||.+++..
T Consensus 162 ~~fG~~~~~~ 171 (476)
T 3e6i_A 162 ILFRKHFDYN 171 (476)
T ss_dssp HHHSCCCCTT
T ss_pred HHcCCCCCCC
Confidence 9999998743
No 5
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=99.95 E-value=2.1e-27 Score=179.35 Aligned_cols=160 Identities=21% Similarity=0.350 Sum_probs=135.2
Q ss_pred CCCCCCCCCCCceecccccC-CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKGFPIVGCLHLL-GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
++++||||+++|++||+..+ ..+++..+.+++++||||+++++++.++++++||++++ ||.++...|.+++.......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~ 87 (476)
T 2fdv_A 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVREALVDQAEEFSGRGEQATFDW 87 (476)
T ss_dssp CCBCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCCHHHHH
T ss_pred cCCCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhcChHhhCCCCCcHHHhh
Confidence 44789999999999999888 46789999999999999999999888999999999999 99776667776654333332
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChHHH--hhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKI--NYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
.. .+.++++++ |+.|+.+|+++. ++|+...+ +.+.+.+.++++.+++.|.+. .+.++|+.+++..+++++|++
T Consensus 88 ~~-~~~~l~~~~-g~~~~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~ 162 (476)
T 2fdv_A 88 VF-KGYGVVFSN-GERAKQLRRFSI-ATLRDFGVGKRGIEERIQEEAGFLIDALRGT--GGANIDPTFFLSRTVSNVISS 162 (476)
T ss_dssp HH-TTCSSSSCC-HHHHHHHHHHHH-HHHHHTTTTSHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHH
T ss_pred hc-CCCCeEecC-chHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHH
Confidence 22 245777775 999999999998 99987766 789999999999999999764 456899999999999999999
Q ss_pred hhccccCCC
Q 036759 158 MVLGKKRSD 166 (176)
Q Consensus 158 ~~fG~~~~~ 166 (176)
++||.+++.
T Consensus 163 ~~fG~~~~~ 171 (476)
T 2fdv_A 163 IVFGDRFDY 171 (476)
T ss_dssp HHHSSCCCT
T ss_pred HHcCCcCCC
Confidence 999998863
No 6
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=99.95 E-value=2.2e-27 Score=179.23 Aligned_cols=160 Identities=23% Similarity=0.411 Sum_probs=133.6
Q ss_pred CCCCCCCCCCCceecccccC-CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKGFPIVGCLHLL-GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.+.||||+++|++||++.+ ..+++..+.+++++||||+++++++.+.|+++||++++ ||.++...|.+++.......
T Consensus 8 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~i~~il~~~~~~f~~~~~~~~~~~ 87 (476)
T 1po5_A 8 KGKLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDP 87 (476)
T ss_dssp -CCCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTTTTTCEECCGGGGCS
T ss_pred CCCCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhCcHhhCCCCCcHHHHh
Confidence 45789999999999999888 57889999999999999999999888899999999999 99776667776554322222
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChH--HHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA--KINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
.. .+.++++++ |+.|+++|+++. +.|+.. .++.+.+.+.++++.+++.|.+. .++++|+.+++..+++++|++
T Consensus 88 ~~-~~~~l~~~~-g~~w~~~Rr~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi~~ 162 (476)
T 1po5_A 88 IF-QGYGVIFAN-GERWRALRRFSL-ATMRDFGMGKRSVEERIQEEARCLVEELRKS--KGALLDNTLLFHSITSNIICS 162 (476)
T ss_dssp CC-SSCCCCCSS-HHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT--TTCCBCCHHHHHHHHHHHHHH
T ss_pred hc-CCCceEecC-CcHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHHH
Confidence 11 245777775 999999999998 888776 45778999999999999999764 456899999999999999999
Q ss_pred hhccccCCC
Q 036759 158 MVLGKKRSD 166 (176)
Q Consensus 158 ~~fG~~~~~ 166 (176)
++||.+++.
T Consensus 163 ~~fG~~~~~ 171 (476)
T 1po5_A 163 IVFGKRFDY 171 (476)
T ss_dssp HHHSSCCCT
T ss_pred HHcCCCCCC
Confidence 999998763
No 7
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=99.95 E-value=2.9e-27 Score=178.31 Aligned_cols=162 Identities=24% Similarity=0.406 Sum_probs=132.5
Q ss_pred CCCCCCCCCCceecccccCC-CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHH
Q 036759 3 KILPPGPKGFPIVGCLHLLG-KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYI 80 (176)
Q Consensus 3 ~~~ppgp~~~p~~G~~~~~~-~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~ 80 (176)
.++||||+++|++||++.+. ++++..+.+|+++|||||++++|+.++|+|+||++++ ||.+++..|++++.......+
T Consensus 9 ~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~~~vvv~~p~~i~~vl~~~~~~f~~r~~~~~~~~~ 88 (479)
T 3tbg_A 9 GKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQIL 88 (479)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTEEEEEEEHHHHHHHHHTTTGGGSCBCCCCGGGGGG
T ss_pred CCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCeeEEEECCHHHHHHHHHhCChhhcCCCchHHHHHh
Confidence 36999999999999998875 6788999999999999999999999999999999999 998888888888766555544
Q ss_pred hhc--CcceEecCCChhHHHHHhhhhhhcCChHHHh--hhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhh
Q 036759 81 SYQ--QKNFAMAPYGSYWRKIRKLCTQNLLTNAKIN--YFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTC 156 (176)
Q Consensus 81 ~~~--~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~--~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~ 156 (176)
... +.+++++.+|+.|+.+|+++. +.|+...+. .+...+......+...+... .+..+|+..++..+++++++
T Consensus 89 ~~~~~~~~~~~~~~g~~w~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 165 (479)
T 3tbg_A 89 GFGPRSQGVFLARYGPAWREQRRFSV-STLRNLGLGKKSLEQWVTEEAACLCAAFANH--SGRPFRPNGLLDKAVSNVIA 165 (479)
T ss_dssp TCBTTBCCSTTCCSSHHHHHHHHHHH-HHHHHTTSTTCHHHHHHHHHHHHHHHHHHTT--TTCCBCTHHHHHHHHHHHHH
T ss_pred ccCCCCCceeeCCCCHHHHHHHHHHH-HHhcchhhhHHHHHHHHHHHHHHHHHHHHhc--cCCcccHHHHHHHHHHHHHH
Confidence 322 345666667999999999998 888766654 34555666666666665554 45689999999999999999
Q ss_pred hhhccccCCCc
Q 036759 157 RMVLGKKRSDD 167 (176)
Q Consensus 157 ~~~fG~~~~~~ 167 (176)
.++||..++..
T Consensus 166 ~~~fg~~~~~~ 176 (479)
T 3tbg_A 166 SLTCGRRFEYD 176 (479)
T ss_dssp HHHHSCCCCTT
T ss_pred HhhcCCccccc
Confidence 99999988753
No 8
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=99.95 E-value=4.4e-27 Score=177.45 Aligned_cols=161 Identities=20% Similarity=0.332 Sum_probs=134.4
Q ss_pred CCCCCCCCCCCceecccccCC-----CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh
Q 036759 2 RKILPPGPKGFPIVGCLHLLG-----KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ 75 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~-----~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~ 75 (176)
+.+.+|||+++|++||++.+. ++++..+.+|+++|||||++++|+.+.++++||++++ |+.++ ..|.+++...
T Consensus 22 pl~~~PGP~~~p~iG~~~~~~~~~~~~~~~~~~~~l~~~YG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~~~~r~~~~ 100 (482)
T 3k9v_A 22 NVTDLPGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEALYRTE-SAHPQRLEIK 100 (482)
T ss_dssp EGGGCCCSCCCTTTBTHHHHHHTTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHTC-CSSCCCCCCH
T ss_pred CCCCCCCCCCCCccccHHHHhccCCcccHHHHHHHHHHHcCCEEEEccCCCCEEEEcCHHHHHHHHHhc-CCCCCCCCch
Confidence 345789999999999987762 4678899999999999999999999999999999999 99774 5677776432
Q ss_pred h---hhHHhhcCcceEecCCChhHHHHHhhhhhhcC-ChHHHhhhhHHHHHHHHHHHHHHHHHhc-CCCcccHHHHHHHH
Q 036759 76 A---TKYISYQQKNFAMAPYGSYWRKIRKLCTQNLL-TNAKINYFQPIRKEELDLLIEYFKEAAR-APCVVDISAKLSAV 150 (176)
Q Consensus 76 ~---~~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f-~~~~l~~~~~~i~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~ 150 (176)
. +......+.++++.+ |+.|+++|+.+. +.| +...++.+.+.+.++++.+++.+.+..+ .+.++|+.+++..+
T Consensus 101 ~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~~~-~~f~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~g~~vd~~~~~~~~ 178 (482)
T 3k9v_A 101 PWKAYRDHRNEAYGLMILE-GQEWQRVRSAFQ-KKLMKPVEIMKLDKKINEVLADFLERMDELCDERGRIPDLYSELNKW 178 (482)
T ss_dssp HHHHHHHHHTCCCCTTTCC-HHHHHHHHHHHH-HHHTCHHHHGGGHHHHHHHHHHHHHHHHHHCCTTSCCTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCCceeCC-CchHHHHHHHhh-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 2 222222346776665 999999999998 775 8889999999999999999999988643 45689999999999
Q ss_pred HhhhhhhhhccccCC
Q 036759 151 SANMTCRMVLGKKRS 165 (176)
Q Consensus 151 ~~~~i~~~~fG~~~~ 165 (176)
++|+|++++||.+++
T Consensus 179 t~dvi~~~~fG~~~~ 193 (482)
T 3k9v_A 179 SFESICLVLYEKRFG 193 (482)
T ss_dssp HHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHcccccC
Confidence 999999999999985
No 9
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=176.16 Aligned_cols=163 Identities=26% Similarity=0.437 Sum_probs=133.0
Q ss_pred CCCCC--CCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhh
Q 036759 2 RKILP--PGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATK 78 (176)
Q Consensus 2 ~~~~p--pgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~ 78 (176)
++++| |||+++|++|+++.+.++++..+.+|+++|||||++++++.++++++||++++ |+.++...|.+++......
T Consensus 12 ~~~lp~~PgP~~~p~~G~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~i~~il~~~~~~f~~r~~~~~~~ 91 (495)
T 2hi4_A 12 PKGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQALVRQGDDFKGRPDLYTST 91 (495)
T ss_dssp CTTCBCCCCCCCBTTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHTTTGGGSCBCCCCHHHH
T ss_pred CCCCCCCCCCCCCcceeeHHhcCccHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHHhcchhhCCCCCcHHHH
Confidence 34555 99999999999988878899999999999999999999998999999999999 9987766787776543322
Q ss_pred HHhhcCcceEec-CCChhHHHHHhhhhhhcCC---hHHH---h---hhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 036759 79 YISYQQKNFAMA-PYGSYWRKIRKLCTQNLLT---NAKI---N---YFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS 148 (176)
Q Consensus 79 ~~~~~~~~~~~~-~~g~~~~~~R~~~~~~~f~---~~~l---~---~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 148 (176)
... .+.+++++ ++|+.|+.+|++++ ++|+ ...+ + .+.+.+.++++.+++.|.+....++++|+.+++.
T Consensus 92 ~~~-~~~~l~~~~~~g~~w~~~Rr~~~-~~f~~~s~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~ 169 (495)
T 2hi4_A 92 LIT-DGQSLTFSTDSGPVWAARRRLAQ-NALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVV 169 (495)
T ss_dssp TST-TSCCTTTSSCCSHHHHHHHHHHH-HHHHHTTTSBCSSCSSCBHHHHHHHHHHHHHHHHHHHHHHTTSCBCHHHHHH
T ss_pred Hhc-CCCCEEEcCCCChHHHHHHHHHH-HHHHHhccCcccccchhhhHHHHHHHHHHHHHHHHHHhccCCCccchHHHHH
Confidence 221 24566666 45999999999998 8754 2222 2 6889999999999999987544567899999999
Q ss_pred HHHhhhhhhhhccccCCC
Q 036759 149 AVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 149 ~~~~~~i~~~~fG~~~~~ 166 (176)
.+++|+|++++||.+++.
T Consensus 170 ~~~~dvi~~~~fG~~~~~ 187 (495)
T 2hi4_A 170 VSVANVIGAMCFGQHFPE 187 (495)
T ss_dssp HHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 999999999999998763
No 10
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=99.94 E-value=4.1e-27 Score=178.63 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=134.1
Q ss_pred CCCCCCCCCCCceecccccCCC----CchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhh
Q 036759 2 RKILPPGPKGFPIVGCLHLLGK----FPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQA 76 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~~----~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~ 76 (176)
+++.||||+++|++||++.+.. .++..+.+|+++||||+++++++.+.++++||++++ +|.+ ..+.+++....
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~~~~vvv~~p~~~~~il~~--~~~~~r~~~~~ 120 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFHIMKH--NHYSSRFGSKL 120 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHHHHHHCHHHHHHHHHHHSCSEEEEESSSSEEEEECCHHHHHHHHHS--GGGCCCCCCHH
T ss_pred ccCCCCCCCCCceeeehhccccccccchhHHHHHHHHHhCCeEEEEeCCccEEEECCHHHHHHHHhc--CCCCCcchhhh
Confidence 4678999999999999987642 345688899999999999999999999999999999 9954 35666654332
Q ss_pred h-hHHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhh
Q 036759 77 T-KYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMT 155 (176)
Q Consensus 77 ~-~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 155 (176)
. ...+..+.++++..+|+.|+.+|++++ ++|+...++.+.+.+.+++.++++.|.+..+.++.+|+.+++..++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~vdl~~~~~~~~~~vi 199 (503)
T 3s79_A 121 GLQCIGMHEKGIIFNNNPELWKTTRPFFM-KALSGPGLVRMVTVCAESLKTHLDRLEEVTNESGYVDVLTLLRRVMLDTS 199 (503)
T ss_dssp HHHHHTCTTSSSTTCCCHHHHHHHHHHHH-HHTSTHHHHHHHHHHHHHHHHHHTTGGGTBCTTSCBCHHHHHHHHHHHHH
T ss_pred hhhhhccCCCceeeCCCccHHHHHHHhhh-HhhChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHHHHHH
Confidence 2 233333567766666999999999999 99999999999999999999999988765445678999999999999999
Q ss_pred hhhhccccCCC
Q 036759 156 CRMVLGKKRSD 166 (176)
Q Consensus 156 ~~~~fG~~~~~ 166 (176)
++++||.++++
T Consensus 200 ~~~~fG~~~~~ 210 (503)
T 3s79_A 200 NTLFLRIPLDE 210 (503)
T ss_dssp HHHHTCCCCCH
T ss_pred HHHHcCcccCc
Confidence 99999998864
No 11
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug metabolism, structural genomics, structural genomics consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens} SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Probab=99.94 E-value=9.5e-27 Score=175.99 Aligned_cols=160 Identities=24% Similarity=0.394 Sum_probs=131.4
Q ss_pred CCCCCCCCCCCceecccccCCCC---chHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhh
Q 036759 2 RKILPPGPKGFPIVGCLHLLGKF---PPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT 77 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~~~---~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~ 77 (176)
+.++||||+++|++|++..+... ++..+.+++++||||+++++++.++++++||++++ |+.++...|++++.....
T Consensus 10 ~~~lpPgP~~~p~~G~~~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~vl~~~~~~f~~~~~~~~~ 89 (481)
T 3czh_A 10 PMGFPPGPPGLPFIGNIYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPCLPLF 89 (481)
T ss_dssp --CCCCCCCCBTTTBHHHHHHHCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEEESHHHHHHHHTTTTTTTCBCCCCHHH
T ss_pred CCCCCCCCCCCcccccHhhcCcccCcHHHHHHHHHHHhCCEEEEEECCccEEEECCHHHHHHHHhhchHhhCCCCCcHHH
Confidence 45789999999999998776433 88999999999999999999988999999999999 998776678777654333
Q ss_pred hHHhhcCcceEecCCChhHHHHHhhhhhhcCChHHH--hhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhh
Q 036759 78 KYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKI--NYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMT 155 (176)
Q Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l--~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 155 (176)
..+.. +.++++..+|+.|+.+|++++ ++|+...+ ..+.+.+.++++.+++.+.+. .+.++|+.+++..+++++|
T Consensus 90 ~~~~~-~~~~~~~~~g~~w~~~R~~~~-~~f~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~~d~~~~~~~~~~~vi 165 (481)
T 3czh_A 90 MKMTK-MGGLLNSRYGRGWVDHRRLAV-NSFRYFGYGQKSFESKILEETKFFNDAIETY--KGRPFDFKQLITNAVSNIT 165 (481)
T ss_dssp HHHHT-TCSSTTCCSSHHHHHHHHHHH-HHHHHTTTTSTTHHHHHHHHHHHHHHHHHTT--TTCCBCCHHHHHHHHHHHH
T ss_pred HhhcC-CCCeEeCCCChHHHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHHHHHc--CCCCcCHHHHHHHHHHHHH
Confidence 33322 235555455999999999998 99876544 678999999999999999764 3567999999999999999
Q ss_pred hhhhccccCC
Q 036759 156 CRMVLGKKRS 165 (176)
Q Consensus 156 ~~~~fG~~~~ 165 (176)
++++||.+++
T Consensus 166 ~~~~fG~~~~ 175 (481)
T 3czh_A 166 NLIIFGERFT 175 (481)
T ss_dssp HHHHHSSCCC
T ss_pred HHHHcCCCCC
Confidence 9999999886
No 12
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=99.94 E-value=5.7e-27 Score=176.94 Aligned_cols=160 Identities=24% Similarity=0.410 Sum_probs=126.7
Q ss_pred CCCCCCCCCCCceecccccC-CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKGFPIVGCLHLL-GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.+.||||+++|++||++.+ ..+++..+.+++++||||+++++++.+.++++||++++ ||.++...|.+++.......
T Consensus 9 ~~~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~v~v~~~~~~~~il~~~~~~f~~~~~~~~~~~ 88 (477)
T 1r9o_A 9 RGKLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAER 88 (477)
T ss_dssp CCBCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEESSSCEEEEECSHHHHHHHHTTTTTTTCEECCCSCCCT
T ss_pred CCCCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEECCCcEEEECCHHHHHHHHhcccHhhCCCCcchhhhh
Confidence 34689999999999999887 35788999999999999999999888899999999999 99766666766553222221
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChH--HHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNA--KINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~--~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
.. .+.++++++ |+.|+++|+++. +.|+.. .++.+.+.+.++++.+++.|.+. .++++|+.+++..+++++|++
T Consensus 89 ~~-~~~~l~~~~-g~~w~~~Rr~~~-~~~~~~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~vi~~ 163 (477)
T 1r9o_A 89 AN-RGFGIVFSN-GKKWKEIRRFSL-MTLRNFGMGKRSIEDRVQEEARCLVEELRKT--KASPCDPTFILGCAPCNVICS 163 (477)
T ss_dssp TT-CTTSSTTCC-HHHHHHHHHHHH-HHHTTSSSCSSCHHHHHHHHHHHHHHHHHTT--TTSCBCTHHHHHHHHHHHHHH
T ss_pred cc-CCCceEecC-ChHHHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHHhc--CCCccChHHHHHHHHHHHHHH
Confidence 11 235666665 999999999998 888876 44678999999999999999764 356899999999999999999
Q ss_pred hhccccCCC
Q 036759 158 MVLGKKRSD 166 (176)
Q Consensus 158 ~~fG~~~~~ 166 (176)
++||.+++.
T Consensus 164 ~~fG~~~~~ 172 (477)
T 1r9o_A 164 IIFHKRFDY 172 (477)
T ss_dssp HHHSCCCCT
T ss_pred HHccCcCCC
Confidence 999998763
No 13
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=99.94 E-value=4.5e-27 Score=176.05 Aligned_cols=158 Identities=18% Similarity=0.265 Sum_probs=134.4
Q ss_pred CCCCCCCCC-CCceecccccCCCCchHHHHHHHHhhC-CeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhh
Q 036759 2 RKILPPGPK-GFPIVGCLHLLGKFPPRALHKLAKIYG-PIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATK 78 (176)
Q Consensus 2 ~~~~ppgp~-~~p~~G~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~ 78 (176)
+.++||||+ ++|++||++.+..+++.++.+|+++|| +||++++++.++++++||++++ ++.++...+.+++......
T Consensus 1 ~~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~~~~~yG~~i~~~~~~~~~~vvv~~p~~~~~il~~~~~~~~~~~~~~~~~ 80 (450)
T 3gw9_A 1 KGKLPPVYPVTVPILGHIIQFGKSPLGFMQECKRQLKSGIFTINIVGKRVTIVGDPHEHSRFFLPRNEVLSPREVYSFMV 80 (450)
T ss_dssp CCSCCCBCCCCSTTTBTHHHHHHCHHHHHHHHHHHHTCSEEEEEETTEEEEEECCGGGTHHHHSSCTTTEESTGGGGGGH
T ss_pred CCCCCCCCCCCcchhccHHHHccCHHHHHHHHHHHhCCCeEEEEECCEeEEEEeCHHHHHHHHhCChhhccchhhHHHHH
Confidence 357899965 599999998887889999999999999 9999999999999999999999 9988777777765443333
Q ss_pred HHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHH-HHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 79 YISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIE-YFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 79 ~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
... +.++++..+++.|+.+|+++. ++|+..+++.+.+.+.+++.++++ .|.+ .++.+|+.+++..++++++++
T Consensus 81 ~~~--g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~---~~~~vd~~~~~~~~~~~~i~~ 154 (450)
T 3gw9_A 81 PVF--GEGVAYAAPYPRMREQLNFLA-EELTIAKFQNFVPAIQHEVRKFMAANWDK---DEGEINLLEDCSTMIINTACQ 154 (450)
T ss_dssp HHH--CTTSGGGSCHHHHHHHHHHHH-HTTSGGGCTTHHHHHHHHHHHHHHHHSCS---SEEEEEHHHHHHHHHHHHHHH
T ss_pred HHh--cCCcccCCCcHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHH
Confidence 222 456666556999999999998 999999999999999999999998 5543 345799999999999999999
Q ss_pred hhccccCC
Q 036759 158 MVLGKKRS 165 (176)
Q Consensus 158 ~~fG~~~~ 165 (176)
++||.+++
T Consensus 155 ~~fG~~~~ 162 (450)
T 3gw9_A 155 CLFGEDLR 162 (450)
T ss_dssp HHSCHHHH
T ss_pred HHcCcchh
Confidence 99999875
No 14
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=99.93 E-value=3e-27 Score=177.85 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=130.9
Q ss_pred CCCCCC-CCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhh
Q 036759 5 LPPGPK-GFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISY 82 (176)
Q Consensus 5 ~ppgp~-~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~ 82 (176)
.||+|+ ++|++||++.+.++++.++.+++++|||||++++++.++|+++||++++ ++.++...+.+++........ .
T Consensus 12 ~PP~~~~~lP~iG~~~~~~~~~~~~~~~~~~kYG~i~~~~~~~~~~vvv~~~~~i~~il~~~~~~~~~~~~~~~~~~~-~ 90 (461)
T 3ld6_A 12 SPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTP-V 90 (461)
T ss_dssp CCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHHHH-H
T ss_pred CCCCCCCCcCeeeeHHHhhhCHHHHHHHHHHHhCCEEEEEECCccEEEEeCHHHHHHHHhCCccccCCCcchhhhhhc-c
Confidence 455554 4899999998888999999999999999999999999999999999999 998877777765543222211 1
Q ss_pred cCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccc
Q 036759 83 QQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGK 162 (176)
Q Consensus 83 ~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 162 (176)
.|.++++..+|+.|+.+|+++. ++|+...++.+.+.+.+.+.++++.|.+ +..+|+.+.+..++++++++++||.
T Consensus 91 ~g~~~~~~~~~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~fG~ 165 (461)
T 3ld6_A 91 FGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASHCLHGK 165 (461)
T ss_dssp HCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHHHHHTCH
T ss_pred CCCccccCCCcHHHHHHHHhcc-ccccHHHHhhhhHHHHHHHHHHHHHHhh----cCCccHHHHHHHHHHHHHHHHHcCc
Confidence 2466766666999999999998 9999999999999999999999888754 3578999999999999999999998
Q ss_pred cCCC
Q 036759 163 KRSD 166 (176)
Q Consensus 163 ~~~~ 166 (176)
++.+
T Consensus 166 ~~~~ 169 (461)
T 3ld6_A 166 EIRS 169 (461)
T ss_dssp HHHH
T ss_pred chhh
Confidence 7653
No 15
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=99.93 E-value=4.5e-25 Score=166.42 Aligned_cols=158 Identities=16% Similarity=0.213 Sum_probs=129.6
Q ss_pred CCCCCCCCCceecccccCC-CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHH-
Q 036759 4 ILPPGPKGFPIVGCLHLLG-KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYI- 80 (176)
Q Consensus 4 ~~ppgp~~~p~~G~~~~~~-~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~- 80 (176)
+.||||+++|++||++.+. .+++..+.+|+++||||+++++++.+.++++||++++ |+.+ ..|.+... .....+
T Consensus 3 ~~~PGP~~~p~iG~l~~~~~~~~~~~~~~~~~~yG~v~~~~~~~~~~v~v~~~~~~~~il~~--~~f~~~~~-~~~~~~~ 79 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDE--SRFDKNLS-QALKFVR 79 (470)
T ss_dssp CCCCCCCCCGGGTTGGGGCSSCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHTCT--TTEEECCC-HHHHHHH
T ss_pred CCCCCCCCCCccccHHHHhcccchHHHHHHHHHhCCeEEEecCCccEEEECCHHHHHHHHhh--cCcCcCch-hHHHHHH
Confidence 5689999999999998875 4788899999999999999999889999999999999 9953 23543222 122211
Q ss_pred hhcCcceEec-CCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhh
Q 036759 81 SYQQKNFAMA-PYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMV 159 (176)
Q Consensus 81 ~~~~~~~~~~-~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 159 (176)
...+.++++. .+|+.|+++|++++ ++|++.+++.+.+.+.+++.++++.|.+.. .+.++|+.+++..+++++|+.++
T Consensus 80 ~~~~~~l~~~~~~g~~w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~vd~~~~~~~~~~~vi~~~~ 157 (470)
T 2ij2_A 80 DFAGDGLFTSWTHEKNWKKAHNILL-PSFSQQAMKGYHAMMVDIAVQLVQKWERLN-ADEHIEVPEDMTRLTLDTIGLCG 157 (470)
T ss_dssp HHHTTSGGGSCTTSHHHHHHHHHHG-GGGSTTTHHHHHHHHHHHHHHHHHHHHTCC-TTCCEEHHHHHHHHHHHHHHHHH
T ss_pred HhcCCceEEcCCCchHHHHHHHHhc-cccCHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCeEEHHHHHHHHHHHHHHHHH
Confidence 1124566665 45999999999998 999999999999999999999999987532 34679999999999999999999
Q ss_pred ccccCCC
Q 036759 160 LGKKRSD 166 (176)
Q Consensus 160 fG~~~~~ 166 (176)
||.+++.
T Consensus 158 fG~~~~~ 164 (470)
T 2ij2_A 158 FNYRFNS 164 (470)
T ss_dssp HSCCCCG
T ss_pred cCCcccc
Confidence 9998864
No 16
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase, metal-binding, heme, iron; HET: HEM REA; 2.10A {Synechocystis SP} PDB: 2ve4_A*
Probab=99.92 E-value=2.9e-25 Score=166.37 Aligned_cols=152 Identities=20% Similarity=0.262 Sum_probs=125.8
Q ss_pred CCCCCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 1 NRKILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 1 ~~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
++.+.||||+++|++||++.+..++. ++.+++++|||||++++++.+.++++||++++ |+.++...+...... ....
T Consensus 9 ~~~~~pPgp~~~P~iG~~~~~~~~~~-~~~~~~~~yg~v~~~~~~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~-~~~~ 86 (444)
T 2ve3_A 9 NSLPIPPGDFGLPWLGETLNFLNDGD-FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPL-STRI 86 (444)
T ss_dssp CCCCCCCCCCCBTTTBTHHHHHHCTT-HHHHHHHHHCSSEEEEETTEEEEEECSHHHHHHHTSSCTTTEEEECCH-HHHH
T ss_pred CCCCCCCCCCCCCccccHHHHhcCcH-HHHHHHHHcCCeEEEeeCCCCEEEEcCHHHHHHHHhCCCcccccchhH-HHHH
Confidence 35678999999999999987766677 88899999999999998888899999999999 997665445532221 1122
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMV 159 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 159 (176)
.. +..+++..+ |+.|+.+|++++ ++|++.+++.+.+.+.++++.+++.|.+ ++++|+.+++..++++++++++
T Consensus 87 ~~-g~~~l~~~~-g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~vi~~~~ 159 (444)
T 2ve3_A 87 LL-GPNALATQM-GEIHRSRRKILY-QAFLPRTLDSYLPKMDGIVQGYLEQWGK----ANEVIWYPQLRRMTFDVAATLF 159 (444)
T ss_dssp HH-CTTSGGGCC-HHHHHHHHHHHH-GGGCHHHHHTTHHHHHHHHHHHHHHHHH----SSEEEHHHHHHHHHHHHHHHHH
T ss_pred Hh-CccccccCC-chHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhcC----CCcEeHHHHHHHHHHHHHHHHH
Confidence 21 122566555 999999999998 9999999999999999999999999864 3689999999999999999999
Q ss_pred cc
Q 036759 160 LG 161 (176)
Q Consensus 160 fG 161 (176)
||
T Consensus 160 fG 161 (444)
T 2ve3_A 160 MG 161 (444)
T ss_dssp TC
T ss_pred cC
Confidence 99
No 17
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=99.92 E-value=6.8e-26 Score=170.34 Aligned_cols=158 Identities=17% Similarity=0.163 Sum_probs=131.5
Q ss_pred CCCCCCC-CCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPG-PKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppg-p~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.++||| |+++|++||++.+..+++.++.+|+++|||||++++++.+.+++++++.++ ++.++...+.++.......
T Consensus 9 ~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~g~~~vvv~~~~~~~~il~~~~~~~~~~~~~~~~~- 87 (461)
T 3i3k_A 9 GVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLT- 87 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEESHHHHHHHH-
T ss_pred CCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEecCceEEEEeChHHHHHHHhccccccccchHHHHhh-
Confidence 4578999 889999999988878899999999999999999999999999999999999 9987665555432211111
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMV 159 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 159 (176)
....+.++++..+|+.|+.+|+++. +.|++..++.+.+.+.+++.++++.|.+ +..+|+.+.+..++++++++++
T Consensus 88 ~~~~g~g~~~~~~g~~w~~~Rr~~~-~~f~~~~l~~~~~~~~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~~~~~~ 162 (461)
T 3i3k_A 88 TPVFGKGVAYDVPNPVFLEQKKMLK-SGLNIAHFKQHVSIIEKETKEYFESWGE----SGEKNVFEALSELIILTASHCL 162 (461)
T ss_dssp HHHHCTTSGGGSCHHHHHHHHHHHH-HHSSHHHHHHHHHHHHHHHHHHGGGGCS----EEEEEHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCeeeeCCCcHHHHHHHHHHh-hhhCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCHHHHHHHHHHHHHHHHH
Confidence 1112467777656999999999998 9999999999999999999999988754 2468999999999999999999
Q ss_pred ccccCC
Q 036759 160 LGKKRS 165 (176)
Q Consensus 160 fG~~~~ 165 (176)
||.++.
T Consensus 163 ~G~~~~ 168 (461)
T 3i3k_A 163 HGKEIR 168 (461)
T ss_dssp TCHHHH
T ss_pred ccHhhh
Confidence 998764
No 18
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=99.92 E-value=1.3e-24 Score=164.38 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=129.5
Q ss_pred CCCCCCCCCCCceecccccCC-----CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh
Q 036759 2 RKILPPGPKGFPIVGCLHLLG-----KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ 75 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~-----~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~ 75 (176)
+.+.+|||++.++. +++.+. .+++..+.+|+++|||||++++|+.+.|+++||++++ |+.++ ..|.+++...
T Consensus 7 pL~~~PGP~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~kYG~i~~~~~g~~~~vvv~dp~~~~~il~~~-~~f~~r~~~~ 84 (487)
T 3n9y_A 7 PFNEIPSPGDNGWL-NLYHFWRETGTHKVHLHHVQNFQKYGPIYREKLGNVESVYVIDPEDVALLFKSE-GPNPERFLIP 84 (487)
T ss_dssp CGGGSCCSCSCHHH-HHHHHHHHTCGGGHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHHTC-CSSCCCCCCH
T ss_pred CHhhCCCCCCCChh-hHHHHHhcCCCcchhHHHHHHHHHcCceeeccCCCCCEEEEcCHHHHHHHHHhC-CCCCCCCCCc
Confidence 34568999988765 654441 3677899999999999999999999999999999999 99765 4677776543
Q ss_pred hhh---HHhhcCcceEecCCChhHHHHHhhhhhh-cCChHHHhhhhHHHHHHHHHHHHHHHHHh----cCCCcccHHHHH
Q 036759 76 ATK---YISYQQKNFAMAPYGSYWRKIRKLCTQN-LLTNAKINYFQPIRKEELDLLIEYFKEAA----RAPCVVDISAKL 147 (176)
Q Consensus 76 ~~~---~~~~~~~~~~~~~~g~~~~~~R~~~~~~-~f~~~~l~~~~~~i~~~~~~~~~~~~~~~----~~~~~~d~~~~~ 147 (176)
... .....+.+++..+ |+.|+.+|++++ + +|++++++.+.+.+.++++.+++.|.+.. ..+.++|+.+++
T Consensus 85 ~~~~~~~~~~~~~~l~~~~-g~~w~~~Rr~l~-~~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~vd~~~~~ 162 (487)
T 3n9y_A 85 PWVAYHQYYQRPIGVLLKK-SAAWKKDRVALN-QEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDL 162 (487)
T ss_dssp HHHHHHHHTTCCCCGGGCC-HHHHHHHHHHHH-HHHTSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTSSSEEECCHHHH
T ss_pred HHHHHHHHccccCCCccCC-cHHHHHHHHhcC-cccCCchHHHHhhhHHHHHHHHHHHHHHHHhcccccCCCCccHHHHH
Confidence 221 1222345666555 999999999998 7 59999999999999999999999997642 224579999999
Q ss_pred HHHHhhhhhhhhccccCCC
Q 036759 148 SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 148 ~~~~~~~i~~~~fG~~~~~ 166 (176)
..+++|+|++++||.+++.
T Consensus 163 ~~~t~dvi~~~~fG~~~~~ 181 (487)
T 3n9y_A 163 FRFAFESITNVIFGERQGM 181 (487)
T ss_dssp HHHHHHHHHHHHHSSCCCT
T ss_pred HHHHHHHHHHHHhcccccc
Confidence 9999999999999999863
No 19
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding, monooxygenase, NADP, oxidoreductase, protein-inhibitor complex; HET: HEM CM6; 1.50A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A* 2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A* 1e9x_A* 1u13_A*
Probab=99.92 E-value=4e-25 Score=166.09 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=113.0
Q ss_pred CCCCCC-CCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHH
Q 036759 3 KILPPG-PKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYI 80 (176)
Q Consensus 3 ~~~ppg-p~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~ 80 (176)
.++||| |+++|++||+..+..+++.++.+++++||||+++++++.++++++++++++ ++.++...|++++........
T Consensus 3 ~~~PPg~p~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~~~~~~~vv~~~~~~~~il~~~~~~~~~~~~~~~~~~~ 82 (455)
T 2cib_A 3 AVALPRVSGGHDEHGHLEEFRTDPIGLMQRVRDELGDVGTFQLAGKQVVLLSGSHANEFFFRAGDDDLDQAKAYPFMTPI 82 (455)
T ss_dssp --CCCBCSCCCBTTBTHHHHTTCHHHHHHHHHHHHCSEEEEEETTEEEEEECSHHHHHHHHHCCTTTEECTTSCGGGHHH
T ss_pred CCCCCCCCCCCCCccCHHHHhhChHHHHHHHHHHcCCEEEEEeCCceEEEECCHHHHHHHHhcCccccCcccchhHHHhh
Confidence 468898 889999999988878899999999999999999999988999999999999 997765567666543222222
Q ss_pred hhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhc
Q 036759 81 SYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVL 160 (176)
Q Consensus 81 ~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~f 160 (176)
. +.++ ..+ |+.|+.+|++++ ++|++.+++.+.+.+.++++.+++.|.+ ++++|+.+++..++++++++++|
T Consensus 83 ~--g~~~-~~~-~~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~~~~----~~~vd~~~~~~~~~~~vi~~~~f 153 (455)
T 2cib_A 83 F--GEGV-VFD-ASPERRKEMLHN-AALRGEQMKGHAATIEDQVRRMIADWGE----AGEIDLLDFFAELTIYTSSACLI 153 (455)
T ss_dssp H--C-----------------------CCHHHHHHHHHHHHHHHHHHHTTCCS----EEEEEHHHHHHHHHHHHHHHHHT
T ss_pred c--CCcc-ccC-cHHHHHHHhhhc-cccCHHHHHHHHHHHHHHHHHHHHHhCC----CCcEeHHHHHHHHHHHHHHHHHc
Confidence 1 2344 344 999999999998 9999999999999999999999988643 35799999999999999999999
Q ss_pred cccCCC
Q 036759 161 GKKRSD 166 (176)
Q Consensus 161 G~~~~~ 166 (176)
|.++++
T Consensus 154 G~~~~~ 159 (455)
T 2cib_A 154 GKKFRD 159 (455)
T ss_dssp CHHHHT
T ss_pred CCCcch
Confidence 998753
No 20
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=99.91 E-value=3.4e-25 Score=167.79 Aligned_cols=152 Identities=24% Similarity=0.395 Sum_probs=125.0
Q ss_pred CCCCCCCCCCCceecccccC-CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKGFPIVGCLHLL-GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.++||||++ ++.+ .++++..+.+|+++||||+++++++.++++++||++++ +|.++...|.+++.......
T Consensus 27 ~~~lPPGP~~------l~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~~f~~r~~~~~~~~ 100 (496)
T 3qz1_A 27 NLHLPPLVPG------FLHLLQPNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTIEEAMIRKWVDFAGRPQIPSYKL 100 (496)
T ss_dssp --CCCCBCSC------SCTTSSSCHHHHHHHGGGTSCSEEEECSSSSCEEEECSTTHHHHTTTTSCSTTCBCCCCTTTTT
T ss_pred CCCCCcCCcc------ccccCCCcchHHHHHHHHHhCCEEEEEeCCcCEEEECCHHHHHHHHHhCcHhhCCCCCcchHHH
Confidence 4578999886 3333 47899999999999999999999999999999999999 99887777887776543332
Q ss_pred HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhh
Q 036759 80 ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMV 159 (176)
Q Consensus 80 ~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 159 (176)
...+..+++++++|+.|+.+|++++ ++|+...++.+.+.+.++++.+++.+.+. .++++|+.+++..+++|+|++++
T Consensus 101 ~~~~~~~l~~~~~g~~w~~~Rr~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~dvi~~~~ 177 (496)
T 3qz1_A 101 VSQRCQDISLGDYSLLWKAHKKLTR-SALLLGTRSSMEPWVDQLTQEFCERMRVQ--AGAPVTIQKEFSLLTCSIICYLT 177 (496)
T ss_dssp SCTTCCCSSSSCCSHHHHHHHHHHH-HHHHC--CCCHHHHHHHHHHHHHHHHHTT--CSCCCHHHHHHTHHHHHHTTTTS
T ss_pred hcCCCCceEECCCCHHHHHHHHHHH-HHHhhccHhhHHHHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHHHHHHh
Confidence 2222237776655999999999998 99987777889999999999999999873 56789999999999999999999
Q ss_pred ccc
Q 036759 160 LGK 162 (176)
Q Consensus 160 fG~ 162 (176)
||.
T Consensus 178 fG~ 180 (496)
T 3qz1_A 178 FGN 180 (496)
T ss_dssp TTC
T ss_pred cCC
Confidence 998
No 21
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1, molecular mechanism, heme, iron, metal-binding, monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor A3} PDB: 3el3_A*
Probab=99.91 E-value=2.7e-25 Score=167.46 Aligned_cols=153 Identities=21% Similarity=0.303 Sum_probs=114.2
Q ss_pred CCCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccc-cCCCchhhhhHH
Q 036759 3 KILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIF-ASRPPLQATKYI 80 (176)
Q Consensus 3 ~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~-~~~~~~~~~~~~ 80 (176)
+..||||+++|++||++.+..+++.++.++++ ||||+++++++.++++++||++++ ++.++ .+ .+.+........
T Consensus 22 ~eppPgP~~~P~iG~~~~~~~~p~~~~~~l~~-yGpv~~~~~g~~~~~vv~~~~~i~~il~~~--~~~~~~~~~~~~~~~ 98 (467)
T 3dbg_A 22 REPPVAGGGVPLLGHGWRLARDPLAFMSQLRD-HGDVVRIKLGPKTVYAVTNPELTGALALNP--DYHIAGPLWESLEGL 98 (467)
T ss_dssp CBCCEECCCCSTTHHHHHHHHCHHHHHHHHGG-GCSEEEEEETTEEEEEECSHHHHHHHHHCT--TC-------------
T ss_pred CCCCCCCCCCCcccchHHhccCHHHHHHHHHH-hCCEEEEEeCCccEEEECCHHHHHHHHhCc--CcccccchHHHHHHh
Confidence 45688999999999998887899999999987 999999999999999999999999 99765 45 332222111111
Q ss_pred hhcC-cceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhh
Q 036759 81 SYQQ-KNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMV 159 (176)
Q Consensus 81 ~~~~-~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~ 159 (176)
.+ .+++..+ |+.|+++|++++ ++|++.+++.+.+.+.++++++++.|.+ +.++|+..++..++++++++++
T Consensus 99 --~g~~~l~~~d-g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~vi~~~~ 170 (467)
T 3dbg_A 99 --LGKEGVATAN-GPLHRRQRRTIQ-PAFRLDAIPAYGPIMEEEAHALTERWQP----GKTVDATSESFRVAVRVAARCL 170 (467)
T ss_dssp --------------------CGGGH-HHHSTTTSTTTHHHHHHHHHHHHHHSCT----TSCEEHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCcccCC-cHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhcc----CCcCcHHHHHHHHHHHHHHHHH
Confidence 12 4666665 999999999998 9999999999999999999999998853 4689999999999999999999
Q ss_pred ccccCCC
Q 036759 160 LGKKRSD 166 (176)
Q Consensus 160 fG~~~~~ 166 (176)
||.++++
T Consensus 171 ~g~~~~~ 177 (467)
T 3dbg_A 171 LRGQYMD 177 (467)
T ss_dssp SCSSCCH
T ss_pred hCCcccc
Confidence 9998874
No 22
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=99.91 E-value=1.6e-24 Score=162.03 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCceecccc-cCCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCchhhh
Q 036759 1 NRKILPPGPKGFPIVGCLH-LLGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT 77 (176)
Q Consensus 1 ~~~~~ppgp~~~p~~G~~~-~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~ 77 (176)
+.++.||||+++|++|++. .+..+++.++.++ ++||||+++++ ++.++|+++|+++++ ||.++ .|.+++.....
T Consensus 23 ~~~~~~PGP~~~p~lG~~~~~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~ 99 (436)
T 2cd8_A 23 RTQQGTTASPPVLDLGALGQDFAADPYPTYARL-RAEGPAHRVRTPEGDEVWLVVGYDRARAVLADP--RFSKDWRNSTT 99 (436)
T ss_dssp -----------CCBHHHHHHHHHHCCHHHHHHH-HTTCSEEEEECSSCCEEEEECSHHHHHHHHHCT--TEECCGGGCSS
T ss_pred hhccCCCCCCccccCCCCCcccccChHHHHHHH-HHhCCeeeeccCCCCeEEEEcCHHHHHHHHcCC--CCccccccccc
Confidence 3567899999999999975 4557899999999 89999999997 777899999999999 99765 56665431111
Q ss_pred hHH---hhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhh
Q 036759 78 KYI---SYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSAN 153 (176)
Q Consensus 78 ~~~---~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 153 (176)
... ...+.++++.+ |+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+. .++++|+..++ ..++++
T Consensus 100 ~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~--~~~~vd~~~~~~~~~~~~ 175 (436)
T 2cd8_A 100 PLTEAEAALNHNMLESD-PPRHTRLRKLVA-REFTMRRVELLRPRVQEIVDGLVDAMLAA--PDGRADLMESLAWPLPIT 175 (436)
T ss_dssp CCCTTGGGTCCSGGGCC-TTHHHHHHHHHG-GGSSHHHHHTTHHHHHHHHHHHHHHHHTC--TTSCEEHHHHTTTHHHHH
T ss_pred ccccccccccccccccC-chHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCcchHHHHHHHHHHH
Confidence 100 11235665554 999999999998 99999999999999999999999999852 35689999877 579999
Q ss_pred hhhhhhccccCC
Q 036759 154 MTCRMVLGKKRS 165 (176)
Q Consensus 154 ~i~~~~fG~~~~ 165 (176)
+|+. +||.+.+
T Consensus 176 vi~~-~~G~~~~ 186 (436)
T 2cd8_A 176 VISE-LLGVPEP 186 (436)
T ss_dssp HHHH-HHTCCGG
T ss_pred HHHH-HhCCCHH
Confidence 9998 6998764
No 23
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=99.90 E-value=1e-24 Score=165.21 Aligned_cols=162 Identities=14% Similarity=0.103 Sum_probs=128.5
Q ss_pred CCCCCCCCCCC-CceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh-hh
Q 036759 1 NRKILPPGPKG-FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ-AT 77 (176)
Q Consensus 1 ~~~~~ppgp~~-~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~-~~ 77 (176)
++.++||||++ +|++||++.+..+++.++.+++++|||||++++++.++|++++|++++ ++.+.. .+....... ..
T Consensus 10 ~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg~~~~vvv~~p~~v~~vl~~~~-~~~~~~~~~~~~ 88 (491)
T 3v8d_A 10 RQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGK-YFDWKKFHFALS 88 (491)
T ss_dssp CCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHSCCT-TEESSHHHHHHH
T ss_pred cCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEECCEEEEEEcCHHHHHHHHhcCC-ccchHHHHHHHH
Confidence 35678999998 699999999989999999999999999999999999999999999999 996543 232222111 11
Q ss_pred hHHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhc---CCCcccHHHHHHHHHhhh
Q 036759 78 KYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAAR---APCVVDISAKLSAVSANM 154 (176)
Q Consensus 78 ~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~ 154 (176)
... .+.+.+...+|+.|+++|+.+. ++|++.+++.+.+.+.+++.++++.+..... ....+++.+++..+++++
T Consensus 89 ~~~--~g~~~~~~~~g~~~~~~Rr~~~-~~f~~~~l~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (491)
T 3v8d_A 89 AKA--FGHRSIDPMDGNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HHH--HTCCCCCGGGSSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHSCCSSCGGGGCSCEEEEHHHHHHHHHHHH
T ss_pred HHh--cCCcccccccchhHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhhhcccCCCCCcccCHHHHHHHHHHHH
Confidence 111 1234444445999999999998 9999999999999999999999885432211 234689999999999999
Q ss_pred hhhhhccccCCC
Q 036759 155 TCRMVLGKKRSD 166 (176)
Q Consensus 155 i~~~~fG~~~~~ 166 (176)
++..+||.++.+
T Consensus 166 ~~~~~fG~~~~~ 177 (491)
T 3v8d_A 166 GYLTIFGRDLTR 177 (491)
T ss_dssp HHHHHHCBCCSC
T ss_pred HHHHHcCccccc
Confidence 999999998764
No 24
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Probab=99.89 E-value=7.9e-24 Score=156.19 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=124.0
Q ss_pred CCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCC-chhhhhHHhhcCc
Q 036759 8 GPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRP-PLQATKYISYQQK 85 (176)
Q Consensus 8 gp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~-~~~~~~~~~~~~~ 85 (176)
.++..|++||++.+..+++.++.+++++||||++ ++++.+.|+++||++++ ++.++ .|.+++ ......... +.
T Consensus 3 ~~~~~p~iGnl~~~~~~p~~~~~~l~~~yGpv~~-~~g~~~~vvv~~~~~i~~il~~~--~f~~~~~~~~~~~~~~--g~ 77 (389)
T 1n97_A 3 RLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFL-PLPRFPLALIFDPEGVEGALLAE--GTTKATFQYRALSRLT--GR 77 (389)
T ss_dssp ECCHHHHHHHHHHHHHCHHHHHHHHHHHCSEEEE-CCTTCCEEEECSHHHHHHHHHCT--TEECCSHHHHHHHHHH--CS
T ss_pred ccccccccccHHHHhhChHHHHHHHHHHcCCeeE-ecCCccEEEECCHHHHHHHHhcC--CCCCChhHHHHHHHHh--CC
Confidence 3556899999988777899999999999999999 88888999999999999 99765 677765 221222222 35
Q ss_pred ceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccccCC
Q 036759 86 NFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 86 ~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~~~ 165 (176)
+++..+ |+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|. ++++|+.+++..++++++++++||.+++
T Consensus 78 ~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~-----~~~~dl~~~~~~~~~~vi~~~~fG~~~~ 150 (389)
T 1n97_A 78 GLLTDW-GESWKEARKALK-DPFLPKNVRGYREAMEEEARAFFGEWR-----GEERDLDHEMLALSLRLLGRALFGKPLS 150 (389)
T ss_dssp STTTCC-HHHHHHHHHHHC-GGGSHHHHHTTHHHHHHHHHHHHHTCC-----SCCEEHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccccCC-cHHHHHHHHHhC-cccCHHHHHHHHHHHHHHHHHHHHHcc-----CCcCcHHHHHHHHHHHHHHHHHcCCcch
Confidence 666665 999999999998 999999999999999999999998876 4689999999999999999999999886
No 25
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR, atomic resolutio structural genomics/proteomics initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum} SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A* 1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A* 1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Probab=99.89 E-value=1.5e-22 Score=149.97 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=118.7
Q ss_pred CCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHhCC-ccccCCCchhhhhH--
Q 036759 5 LPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKTHD-LIFASRPPLQATKY-- 79 (176)
Q Consensus 5 ~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~~~-~~~~~~~~~~~~~~-- 79 (176)
.||||+++|++|++.. +|+..+.+|+ +||||+++.++ +...+++++++.++ +|.++. ..+..++.......
T Consensus 2 ~pPGp~~~P~~g~~~~---~p~~~~~~l~-~~Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~~~~~~~~r~~~~~~~~~~ 77 (404)
T 1jfb_A 2 MASGAPSFPFSRASGP---EPPAEFAKLR-ATNPVSQVKLFDGSLAWLVTKHKDVCFVATSEKLSKVRTRQGFPELSASG 77 (404)
T ss_dssp ----CCBSSCCCSSTT---SCCTHHHHHH-HHCSEEEEECTTSCEEEEECSHHHHHHHHHCTTEECCTTSTTCCCCSHHH
T ss_pred CCCCCCCCCCCCCcCC---CccHHHHHHH-HhCCeeeeecCCCCceEEEecHHHHHHHHcCCcccccccccCCccccccc
Confidence 5999999999999764 8999999996 69999998874 56778899999999 997652 22223332211110
Q ss_pred --HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhh
Q 036759 80 --ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 --~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~ 157 (176)
....+.++++++ |+.|+++|++++ ++|++.+++.+.+.+.++++++++.|.+....+.++|+...+...+.++++.
T Consensus 78 ~~~~~~~~~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~d~~~~~~~~~~~~i~~ 155 (404)
T 1jfb_A 78 KQAAKAKPTFVDMD-PPEHMHQRSMVE-PTFTPEAVKNLQPYIQRTVDDLLEQMKQKGCANGPVDLVKEFALPVPSYIIY 155 (404)
T ss_dssp HHHTTSCCCGGGCC-TTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCEEHHHHTTTHHHHHHHH
T ss_pred cchhcccCcccccC-chhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHH
Confidence 111223455555 999999999998 9999999999999999999999999987643456899999999999999999
Q ss_pred hhccccCCC
Q 036759 158 MVLGKKRSD 166 (176)
Q Consensus 158 ~~fG~~~~~ 166 (176)
.+||.++++
T Consensus 156 ~~~G~~~~~ 164 (404)
T 1jfb_A 156 TLLGVPFND 164 (404)
T ss_dssp HHHTCCGGG
T ss_pred HHcCCCHHH
Confidence 999987753
No 26
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase, oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas paucimobilis} PDB: 3awq_A* 3awp_A*
Probab=99.87 E-value=3.9e-22 Score=148.24 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=117.2
Q ss_pred CCCCCCCceecccccCCCCchHHHHHHHHhh-CCeEEEecCCeeEEEeccHHHHHHHHhCCccccCCCchhhhhHHh-hc
Q 036759 6 PPGPKGFPIVGCLHLLGKFPPRALHKLAKIY-GPIMHLRLGLMTTIVVSSPQAAEFLKTHDLIFASRPPLQATKYIS-YQ 83 (176)
Q Consensus 6 ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~y-g~i~~~~~~~~~~v~i~~~~~i~vl~~~~~~~~~~~~~~~~~~~~-~~ 83 (176)
|||| |++||+..+..+|+.++.+++++| |||+++.+++.++++++++++++++.+. ..|++.+.... .... ..
T Consensus 4 pPg~---P~iG~~~~~~~~p~~~~~~l~~~y~gpv~~~~~~g~~~~vv~~~~~~~~l~~~-~~f~~~~~~~~-~~~~~~~ 78 (415)
T 3awm_A 4 TPHT---KGPDETLSLLADPYRFISRQCQRLGANAFESRFLLKKTNCLKGAKAAEIFYDT-TRFEREGAMPV-AIQKTLL 78 (415)
T ss_dssp --------CCCCHHHHHHSTTTHHHHHHHHHTSSEEEEEETTEEEEEEESHHHHHHHTCT-TTEECTTCSCH-HHHTTTS
T ss_pred CCCC---CccchHHHHHhChHHHHHHHHHHhCCCeEEEecCCCcEEEEeCHHHHHHHhcc-cccccccccch-hhhhhcc
Confidence 6665 899999888788999999999999 7999999888899999999998844333 35655432211 1111 11
Q ss_pred C-cceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccc
Q 036759 84 Q-KNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGK 162 (176)
Q Consensus 84 ~-~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~ 162 (176)
+ .+++.. +|+.|+++|++++ ++|++++++.+.+.+.+.++++++.|.+. +++|+.+++..+++++++++ ||.
T Consensus 79 g~~~l~~~-dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~~~~~----~~vdl~~~~~~~~~~vi~~~-~G~ 151 (415)
T 3awm_A 79 GQGGVQGL-DGETHRHRKQMFM-GLMTPERVRALAQLFEAEWRRAVPGWTRK----GEIVFYDELHEPLTRAVCAW-AGV 151 (415)
T ss_dssp CSSSGGGC-CHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHHH----SEEEHHHHHHHHHHHHHHHH-HTC
T ss_pred CCcceeec-CcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHhhccC----CcEeHHHHHHHHHHHHHHHH-cCC
Confidence 2 355555 4999999999998 99999999999999999999999999763 57999999999999999999 899
Q ss_pred cCCCc
Q 036759 163 KRSDD 167 (176)
Q Consensus 163 ~~~~~ 167 (176)
++++.
T Consensus 152 ~~~~~ 156 (415)
T 3awm_A 152 PLPDD 156 (415)
T ss_dssp CCCGG
T ss_pred CCCcc
Confidence 87653
No 27
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid complex, riken structural genomics/proteomics initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Probab=99.87 E-value=3.2e-22 Score=148.81 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=118.1
Q ss_pred CceecccccCCCCchHHHHHHHHhhC-CeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh--hhhHHhhcCcce
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYG-PIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ--ATKYISYQQKNF 87 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (176)
.|++||+..+..+|+.++.+++++|| ||+++.+++.++|+++++++++ ++. ...+.+..... ....+. +..++
T Consensus 8 ~P~lG~~~~~~~~p~~~~~~l~~~yg~pv~~~~~~g~~~v~v~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~-g~~~l 84 (417)
T 1izo_A 8 DKSLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYD--TDRFQRQNALPKRVQKSLF-GVNAI 84 (417)
T ss_dssp CCCTTHHHHHHHHGGGHHHHHHHHTTSSEEEEEETTEEEEEECSHHHHHHHTC--TTTEECTTCSCHHHHTTTT-CTTCG
T ss_pred CCccchHHHHhhCcHHHHHHHHHHhCCCeEEeecCCccEEEECCHHHHHHHhc--ccccccccccccchhhhhc-cccce
Confidence 48999998887889999999999998 9999998888999999999999 663 23455433211 111111 11345
Q ss_pred EecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccccCCCc
Q 036759 88 AMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSDD 167 (176)
Q Consensus 88 ~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~~~~~ 167 (176)
+..+ |+.|+.+|++++ ++|++.+++.+.+.+.+.+.++++.|.+ ++++|+.+++..+++++|+++ ||.++++.
T Consensus 85 ~~~d-g~~h~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~vi~~~-~G~~~~~~ 157 (417)
T 1izo_A 85 QGMD-GSAHIHRKMLFL-SLMTPPHQKRLAELMTEEWKAAVTRWEK----ADEVVLFEEAKEILCRVACYW-AGVPLKET 157 (417)
T ss_dssp GGCC-HHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEHHHHHHHHHHHHHHHH-HTCCCCTT
T ss_pred eecC-ChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCeeHHHHHHHHHHHHHHHH-cCCCCCch
Confidence 5554 999999999998 9999999999999999999999999864 468999999999999999998 59988754
No 28
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid biosynthesis, heme, iron, synthesis, lyase, metal-binding, oxylipin biosynthesis; HET: HEM T25; 1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A* 3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Probab=99.87 E-value=1.6e-22 Score=153.32 Aligned_cols=163 Identities=13% Similarity=0.151 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCceecccccC-----CCCchHHHHHHHHhhCC-eEEEecCCeeE-------EEeccHHHHH-HHHhCC--
Q 036759 2 RKILPPGPKGFPIVGCLHLL-----GKFPPRALHKLAKIYGP-IMHLRLGLMTT-------IVVSSPQAAE-FLKTHD-- 65 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-----~~~~~~~~~~~~~~yg~-i~~~~~~~~~~-------v~i~~~~~i~-vl~~~~-- 65 (176)
+.+.||||+++|++|++..+ .++++.++.++.++||+ ||++++++.++ +++++++..+ ++....
T Consensus 26 p~~~pPGp~g~P~iG~~~~~~~~~~~~~~~~f~~~~~~kyG~~Vf~~~l~~~~~vv~~p~~v~~~~~~~~~~l~~~~~v~ 105 (495)
T 3dsk_A 26 PIRNIPGNYGLPIVGPIKDRWDYFYDQGAEEFFKSRIRKYNSTVYRVNMPPGAFIAENPQVVALLDGKSFPVLFDVDKVE 105 (495)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHTTSCHHHHHHHHHHHHTCSEEEEECSCCTTTCSCCEEEEECSTTTGGGGGCTTTEE
T ss_pred CCCCCCCCCCCCccchHHHHHHHHHhcCcHHHHHHHHHHhCCceEeecCCCCCCccCCCCEEEEeCCcceeeeccccccc
Confidence 45689999999999998766 47899999999999999 99999977666 6777887777 663311
Q ss_pred --ccccCCCchhhhhHHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccH
Q 036759 66 --LIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDI 143 (176)
Q Consensus 66 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~ 143 (176)
..+...... .....+..+...++..+|+.|+.+|+++. +.|++.. +.+.+.+.+.+.++++.|.+....++++|+
T Consensus 106 k~~~~~~~~~~-~~~l~g~~~~~~~~~~~g~~h~~~R~~~~-~~f~~~~-~~~~~~i~~~~~~ll~~~~~~~~~~~~vdl 182 (495)
T 3dsk_A 106 KKDLLTGTYMP-STELTGGYRILSYLDPSEPKHEKLKNLLF-FLLKSSR-NRIFPEFQATYSELFDSLEKELSLKGKADF 182 (495)
T ss_dssp CSSCTTSSSCC-CGGGGTTCCCGGGCCTTSHHHHHHHHHHH-HHHHHTT-TTHHHHHHHHHHHHHHHHHHHHHHHSSEES
T ss_pred ccccccccCCC-CccccCCCcceeeeCCCchHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCccH
Confidence 111111111 11222212122333335999999999998 9998754 889999999999999999874334568999
Q ss_pred HHHHHHHHhhhhhhhhccccCCCc
Q 036759 144 SAKLSAVSANMTCRMVLGKKRSDD 167 (176)
Q Consensus 144 ~~~~~~~~~~~i~~~~fG~~~~~~ 167 (176)
.+++..++++++++++||.++++.
T Consensus 183 ~~~~~~~~~~~i~~~~~G~~~~~~ 206 (495)
T 3dsk_A 183 GGSSDGTAFNFLARAFYGTNPADT 206 (495)
T ss_dssp HHHHHHHHHHHHHHHHHSCCGGGS
T ss_pred HHHHHHHHHHHHHHHHcCCCcchh
Confidence 999999999999999999887654
No 29
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide, monooxygenase, metab enzyme, oxidoreductase, heme, cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A* 4enh_A* 4fia_A*
Probab=99.86 E-value=5.9e-21 Score=143.27 Aligned_cols=139 Identities=16% Similarity=0.293 Sum_probs=115.7
Q ss_pred CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHH----h--hcCcceEecCCChh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYI----S--YQQKNFAMAPYGSY 95 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~g~~ 95 (176)
+.++..+.+|+++|||||++++++.+.++++||++++ +|.+ ..+.+++.. +... + ..+.++++..+|+.
T Consensus 10 ~~~~~~~~~~~~kyG~v~~~~~~~~~~vvv~~p~~~~~il~~--~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~g~~ 85 (456)
T 3mdm_A 10 RVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMS--TKYNKDSKM--YRALQTVFGERLFGQGLVSECNYER 85 (456)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEETTEEEEEECCHHHHHHHHTC--TTSCCCHHH--HHHHHEETTEESSTTSTTTCCCHHH
T ss_pred chHHHHHHHHHHHhCCeEEEEeCCCCEEEECCHHHHHHHHhh--ccccccchh--HHHHHHhhcccccCCCcccCCChHH
Confidence 4678899999999999999999999999999999999 9953 344443321 1111 1 12356666556999
Q ss_pred HHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccccCCC
Q 036759 96 WRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 96 ~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~~~~ 166 (176)
|+.+|++++ ++|++++++.+.+.+.++++.+++.+.+..+.+.++|+.+++..+++|++++++||.+++.
T Consensus 86 w~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~vd~~~~~~~~~~dvi~~~~fG~~~~~ 155 (456)
T 3mdm_A 86 WHKQRRVID-LAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSM 155 (456)
T ss_dssp HHHHHHHHG-GGGSHHHHHTTHHHHHHHHHHHHHHHHHTCSSSSCEEHHHHHHHHHHHHHHHHHHSCCCCG
T ss_pred HHHHHhhcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHHHHHHHHHHcCCChhh
Confidence 999999998 9999999999999999999999999988655567899999999999999999999999874
No 30
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=99.86 E-value=5.8e-22 Score=149.93 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=120.6
Q ss_pred CCCCCCCCCC-CceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh-hhh
Q 036759 2 RKILPPGPKG-FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ-ATK 78 (176)
Q Consensus 2 ~~~~ppgp~~-~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~-~~~ 78 (176)
+.+.||||++ +|++||++.+..+++.++.+|+++||+||++++++.++++++||++++ ++.++.. +..+.... ...
T Consensus 11 ~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g~~~~vvv~dp~~~~~il~~~~~-~~~~~~~~~~~~ 89 (491)
T 3dax_A 11 QTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKY-FDWKKFHFATSA 89 (491)
T ss_dssp CTTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGTHHHHSCCTT-EESSHHHHHHHH
T ss_pred CCCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEECCeEEEEEcChHHHHHHHcCCcc-CChHHHHHHHHH
Confidence 4568899887 899999998888899999999999999999999999999999999999 9965431 22222111 111
Q ss_pred HHhhcCcceE-ecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHh---cCCCcccHHHHHHHHHhhh
Q 036759 79 YISYQQKNFA-MAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAA---RAPCVVDISAKLSAVSANM 154 (176)
Q Consensus 79 ~~~~~~~~~~-~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~ 154 (176)
.. .+.+++ ..+ |+.|+.+|+.+. ++|+...++.+.+.+.+.+.++++...... .....+++...+..+++++
T Consensus 90 ~~--~g~~~~~~~~-g~~w~~~r~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 165 (491)
T 3dax_A 90 KA--FGHRSIDPMD-GNTTENINDTFI-KTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEA 165 (491)
T ss_dssp HH--HTCCCCCGGG-TSBCCCHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHC----------CCEEEEHHHHHHHHHHHH
T ss_pred HH--cCCCcccccc-hhHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHhhccCCcCCCCceeccHHHHHHHHHHHH
Confidence 11 134554 444 889999999998 899999999988888888888776653321 1123578999999999999
Q ss_pred hhhhhccccCCC
Q 036759 155 TCRMVLGKKRSD 166 (176)
Q Consensus 155 i~~~~fG~~~~~ 166 (176)
++.++||.+++.
T Consensus 166 ~~~~~fG~~~~~ 177 (491)
T 3dax_A 166 GYLTIFGRDLTR 177 (491)
T ss_dssp HHHHHHCBCSTT
T ss_pred hHHHHcCccccc
Confidence 999999988764
No 31
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A {Amycolatopsis orientalis} SCOP: a.104.1.1
Probab=99.85 E-value=3.2e-21 Score=143.05 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=117.7
Q ss_pred CCCCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEe----c-CC-eeEEEeccHHHHH-HH-HhCCccccCCCc
Q 036759 2 RKILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLR----L-GL-MTTIVVSSPQAAE-FL-KTHDLIFASRPP 73 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~----~-~~-~~~v~i~~~~~i~-vl-~~~~~~~~~~~~ 73 (176)
+.++||||+++|+. +..+++.++.+| ++||||++++ + ++ .++|+++|+++++ || .+. .+.+++.
T Consensus 8 ~~~lppgp~~~p~~-----~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~~~~~~vvv~~~~~i~~vl~~~~--~~~~~~~ 79 (406)
T 1ued_A 8 VAPLLREPANFQLR-----TNCDPHEDNFGL-RAHGPLVRIVGESSTQLGRDFVWQAHGYEVVRRILGDHE--HFTTRPQ 79 (406)
T ss_dssp CCCEEECCTTTTCE-----ETTEECHHHHHH-HTTCSEEEEESHHHHHTTSSCEEEECSHHHHHHHHHCCS--SEECCCC
T ss_pred CCCCcccCcccCCC-----CCCCcHHHHHHH-HHhCCeeeecccccCCCCCccEEEEcCHHHHHHHHhhCc--ccccccc
Confidence 35689999999987 447899999999 9999999999 6 77 8899999999999 99 443 3455443
Q ss_pred hhhhh-HHh---hcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q 036759 74 LQATK-YIS---YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSA 149 (176)
Q Consensus 74 ~~~~~-~~~---~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 149 (176)
..... .+. ..+.++++. +|+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+ .++++|+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~ 154 (406)
T 1ued_A 80 FTQSKSGAHVEAQFVGQISTY-DPPEHTRLRKMLT-PEFTVRRIRRMEPAIQSLIDDRLDLLEA---EGPSADLQGLFAD 154 (406)
T ss_dssp C---------CGGGTTCGGGC-CTTHHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHH---HCTTEEHHHHTHH
T ss_pred ccccccccccccccccccccC-CCHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHH
Confidence 11110 111 023456555 4999999999999 9999999999999999999999999985 3568999998875
Q ss_pred -HHhhhhhhhhccccCC
Q 036759 150 -VSANMTCRMVLGKKRS 165 (176)
Q Consensus 150 -~~~~~i~~~~fG~~~~ 165 (176)
+++++++. +||.+.+
T Consensus 155 ~~~~~vi~~-~~G~~~~ 170 (406)
T 1ued_A 155 PVGAHALCE-LLGIPRD 170 (406)
T ss_dssp HHHHHHHHH-HHTCCHH
T ss_pred HhHHHHHHH-HcCCCHH
Confidence 99999994 7998653
No 32
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.50A {Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A* 3cv9_A*
Probab=99.84 E-value=1.5e-20 Score=139.62 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=116.5
Q ss_pred CCCCCCCCCCCceecccccCCCCchHHHHHHHHhh-CCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCchhhhh
Q 036759 2 RKILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIY-GPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATK 78 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~y-g~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~ 78 (176)
....||+|+++|.+.....+..+|+..+.+| ++| |||+++.+ ++.+.|+++++++++ ||.++ .+++++....+.
T Consensus 3 ~~~~~~~~~~~P~~~~~~~~~~~p~~~~~~l-~~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~ 79 (412)
T 2zbx_A 3 DTATTPQTTDAPAFPSNRSCPYQLPDGYAQL-RDTPGPLHRVTLYDGRQAWVVTKHEAARKLLGDP--RLSSNRTDDNFP 79 (412)
T ss_dssp -----CCCCSSCBSSCCCSSTTSCCHHHHHH-HHSSSSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEECCTTSTTSC
T ss_pred CCCCCCCCCCCCCCCCCchhccChHHHHHHH-HhcCCCeEeeccCCCCcEEEEecHHHHHHHHcCc--ccccCccccccc
Confidence 4567888888886633344667999999999 788 99999997 788999999999999 99654 244433211111
Q ss_pred H-------HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HH
Q 036759 79 Y-------ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AV 150 (176)
Q Consensus 79 ~-------~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 150 (176)
. ....+.++++. +|+.|+++|++++ ++|++.+++.+.+.+.+.+.++++.|.+ .+.++|+..++. .+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~-~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~ 154 (412)
T 2zbx_A 80 ATSPRFEAVRESPQAFIGL-DPPEHGTRRRMTI-SEFTVKRIKGMRPEVEEVVHGFLDEMLA---AGPTADLVSQFALPV 154 (412)
T ss_dssp CCSGGGC----CCCCGGGC-CTTHHHHHHTTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHH
T ss_pred ccccccccccccccccccC-CcHHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHH
Confidence 0 00022355555 4999999999999 9999999999999999999999999985 356899998886 49
Q ss_pred HhhhhhhhhccccCC
Q 036759 151 SANMTCRMVLGKKRS 165 (176)
Q Consensus 151 ~~~~i~~~~fG~~~~ 165 (176)
++++++. +||.+.+
T Consensus 155 ~~~vi~~-~~G~~~~ 168 (412)
T 2zbx_A 155 PSMVICR-LLGVPYA 168 (412)
T ss_dssp HHHHHHH-HHTCCGG
T ss_pred HHHHHHH-HcCCCHH
Confidence 9999997 6998764
No 33
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty acid biosynthesis, heme, iron, lipid synthesis, lyase, metal-binding; HET: HEM; 1.80A {Parthenium argentatum} PDB: 3dam_A* 3dbm_A*
Probab=99.84 E-value=4.8e-21 Score=144.33 Aligned_cols=162 Identities=12% Similarity=0.095 Sum_probs=120.2
Q ss_pred CCCCCCCCCCCceecccccC-----CC-CchHHHHHHHHhhCC-eEEEecC-------CeeEEEeccHHHHH-HHHh---
Q 036759 2 RKILPPGPKGFPIVGCLHLL-----GK-FPPRALHKLAKIYGP-IMHLRLG-------LMTTIVVSSPQAAE-FLKT--- 63 (176)
Q Consensus 2 ~~~~ppgp~~~p~~G~~~~~-----~~-~~~~~~~~~~~~yg~-i~~~~~~-------~~~~v~i~~~~~i~-vl~~--- 63 (176)
|.+.||||.++|++|++..+ .. +++.++.++.++||+ ||+++++ +...+++++.+..+ ++..
T Consensus 7 Pl~~iPGp~g~P~iG~~~~~~~~~~~~g~~~~~~~~~~~kyG~~vf~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~ 86 (473)
T 3dan_A 7 PLREIPGSYGIPFFQPIKDRLEYFYGTGGRDEYFRSRMQKYQSTVFRANMPPGPFVSSNPKVIVLLDAKSFPILFDVSKV 86 (473)
T ss_dssp CBCCCCCCCCSTTHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSEEEEECTTCTTTCSCCEEEEECSTTTGGGGGCTTTE
T ss_pred CCCCCCCCCCCcchhhHHHHHHHHHhhcCchHHHHhHHHHhCCeEEEecCCCCCccccCCceEEeecccccceecCCcce
Confidence 55678999999999998764 45 789999999999999 9999885 34566667777666 5531
Q ss_pred -CCccccCCCchhhhhHHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCccc
Q 036759 64 -HDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVD 142 (176)
Q Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 142 (176)
+...+..... ......+......+...+|+.|+.+|++++ ++|+++ ++.+.+.+.+.++++++.|.+....++++|
T Consensus 87 ~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~h~~~R~~~~-~~f~~~-~~~~~~~i~~~~~~ll~~~~~~~~~~~~vd 163 (473)
T 3dan_A 87 EKKDLFTGTYM-PSTKLTGGYRVLSYLDPSEPRHAQLKNLLF-FMLKNS-SNRVIPQFETTYTELFEGLEAELAKNGKAA 163 (473)
T ss_dssp ECSSCTTSSSC-CCGGGGTTSCCGGGCCTTSHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHSCEE
T ss_pred ecccccccccc-CCccccCCCcceeeeCCCcHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 1111111111 111222211122233345999999999998 999984 899999999999999999986433346899
Q ss_pred HHHHHHHHHhhhhhhhhccccCCC
Q 036759 143 ISAKLSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 143 ~~~~~~~~~~~~i~~~~fG~~~~~ 166 (176)
+.+++..++++++++++||.++++
T Consensus 164 l~~~~~~~~~~~i~~~~~G~~~~~ 187 (473)
T 3dan_A 164 FNDVGEQAAFRFLGRAYFNSNPEE 187 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999998875
No 34
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=99.83 E-value=3e-20 Score=140.89 Aligned_cols=158 Identities=12% Similarity=0.028 Sum_probs=117.6
Q ss_pred CCCCCCCCCC-CceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKG-FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~-~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.+.||||++ +|++||++.+..+++.++.+|+++|||||++++++.++++++||++++ ++.++...+..++.. ...
T Consensus 16 ~~~~PPgp~~~~P~iG~~~~~~~~~~~~~~~l~~kYG~i~~v~lg~~~~vvv~~p~~~~~il~~~~~~~~~~~~~--~~~ 93 (498)
T 3b6h_A 16 RPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEKHGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYA--IFL 93 (498)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCGGGHHHHHTCCTTTEECCHHH--HHH
T ss_pred CCCCCCCCCCCCcchhhHHHhccCHHHHHHHHHHHcCCeEEEEECCeeEEEEcCHHHHHHHHhCccccCCchhhH--HHH
Confidence 5578999988 899999988877889999999999999999999999999999999999 996654323332211 111
Q ss_pred H-hhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhc-CCCcccHHHHHHHHHhhhhhh
Q 036759 80 I-SYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAAR-APCVVDISAKLSAVSANMTCR 157 (176)
Q Consensus 80 ~-~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~i~~ 157 (176)
. ...+.+++..+ ++.| |+++. ++|+...++.+.+.+.+.+...++....... ....+++...+..+++++++.
T Consensus 94 ~~~~~g~~~~~~~-~~~~---rr~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~vi~~~~~~ 168 (498)
T 3b6h_A 94 MERIFDVQLPHYS-PSDE---KARMK-LTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYL 168 (498)
T ss_dssp HHHTSCCCCTTCC-HHHH---HHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccccC-HHHH---HHHHH-HhhchHhHHHHHHHHHHHHHHHHhhcccccCCCcceecHHHHHHHHHHHHHHH
Confidence 1 11234444443 6665 56666 7888888888888888888777776543211 123578999999999999999
Q ss_pred hhccccCCC
Q 036759 158 MVLGKKRSD 166 (176)
Q Consensus 158 ~~fG~~~~~ 166 (176)
++||.++++
T Consensus 169 ~~fG~~~~~ 177 (498)
T 3b6h_A 169 TLYGIEALP 177 (498)
T ss_dssp HHHCBSCSS
T ss_pred hhcCccccc
Confidence 999998754
No 35
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=99.82 E-value=1.5e-19 Score=135.17 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=118.5
Q ss_pred CCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEe--------cCCeeEEEeccHHHHH-HHHhCCccccCCCch
Q 036759 4 ILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLR--------LGLMTTIVVSSPQAAE-FLKTHDLIFASRPPL 74 (176)
Q Consensus 4 ~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~--------~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~ 74 (176)
..||+|..++++........+|+.++.++ ++||||+++. +|+.++|++++++.++ ||.+. ..|++++..
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~~p~~~~~~l-r~~gPv~~~~~~~g~~~~lG~~~~~vv~~~~~v~~vl~~~-~~fs~~~~~ 95 (433)
T 3ivy_A 18 PSPNLPPGFDFTDPAIYAERLPVAEFAEL-RSAAPIWWNGQDPGKGGGFHDGGFWAITKLNDVKEISRHS-DVFSSYENG 95 (433)
T ss_dssp --CCCCTTCCTTCHHHHTTCCCHHHHHHH-HHHCSEEEEECCTTCSTTCCSSEEEEECSHHHHHHHHHCT-TTEESTTTC
T ss_pred CCCCCCCCCCCCCHHHhhcCCccHHHHHH-HhcCCEEecccccccccccCCCCEEEEecHHHHHHHHcCh-hhccCCccc
Confidence 45677777877766554446799999999 7899999998 4447899999999999 99543 567766543
Q ss_pred hhhh--------HHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH
Q 036759 75 QATK--------YISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK 146 (176)
Q Consensus 75 ~~~~--------~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~ 146 (176)
.... .....+.+++..+ |+.|+++|++++ ++|++..++.+.+.+.+.++++++.|... +++|+..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~~d~~~~ 169 (433)
T 3ivy_A 96 VIPRFKNDIAREDIEVQRFVMLNMD-APHHTRLRKIIS-RGFTPRAVGRLHDELQERAQKIAAEAAAA----GSGDFVEQ 169 (433)
T ss_dssp SCCCCCTTCCHHHHHGGGGSGGGCC-TTHHHHHHHHHG-GGSCHHHHHTTHHHHHHHHHHHHHHHHHH----CEEEHHHH
T ss_pred ccccccccccccccccccCCccccC-hHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhhC----CCeeHHHH
Confidence 2211 1222235666555 999999999998 99999999999999999999999999853 57999888
Q ss_pred H-HHHHhhhhhhhhccccC
Q 036759 147 L-SAVSANMTCRMVLGKKR 164 (176)
Q Consensus 147 ~-~~~~~~~i~~~~fG~~~ 164 (176)
+ ..+++++|+++ ||.+.
T Consensus 170 ~~~~~~~~vi~~l-~G~~~ 187 (433)
T 3ivy_A 170 VSCELPLQAIAGL-LGVPQ 187 (433)
T ss_dssp TTSHHHHHHHHHH-HTCCH
T ss_pred HHHHHHHHHHHHH-cCCCH
Confidence 7 99999999996 88653
No 36
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A {Pseudomonas SP} SCOP: a.104.1.1
Probab=99.82 E-value=1.9e-20 Score=139.69 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=119.3
Q ss_pred CCCCCCCCCCCCceecccccCC-----CCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCc
Q 036759 1 NRKILPPGPKGFPIVGCLHLLG-----KFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPP 73 (176)
Q Consensus 1 ~~~~~ppgp~~~p~~G~~~~~~-----~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~ 73 (176)
.|.++||| ++|++.... .+|+..+.++++ ||||+++++ |+.++|++++++.++ +|.+. ..|++++.
T Consensus 3 ~~~~~pp~-----~~g~l~~~~~~~~~~~p~~~~~~l~~-~gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~-~~fs~r~~ 75 (428)
T 1cpt_A 3 ARATIPEH-----IARTVILPQGYADDEVIYPAFKWLRD-EQPLAMAHIEGYDPMWIATKHADVMQIGKQP-GLFSNAEG 75 (428)
T ss_dssp TTCCSCHH-----HHHHHHSSGGGGCHHHHHHHHHHHHH-HCSEEEECCTTSCCEEEECSHHHHHHHHHCT-TTEESSSS
T ss_pred cccccchh-----hhcccCChhhhcccCCccHHHHHHHH-hCCeeeccccCCCCeEEEccHHHHHHHHcCc-hhccCccc
Confidence 36788898 888865542 357888999976 799999997 677899999999999 99654 46777654
Q ss_pred -hhhh---h---H---Hh---hcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCc
Q 036759 74 -LQAT---K---Y---IS---YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCV 140 (176)
Q Consensus 74 -~~~~---~---~---~~---~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (176)
.... . . .+ ..+.++++.+ |+.|+++|++++ ++|++.+++.+.+.+.++++++++.|.+ .+++
T Consensus 76 ~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~-g~~~~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~ 150 (428)
T 1cpt_A 76 SEILYDQNNEAFMRSISGGCPHVIDSLTSMD-PPTHTAYRGLTL-NWFQPASIRKLEENIRRIAQASVQRLLD---FDGE 150 (428)
T ss_dssp CSSCCCHHHHHHHHHHTTTSSCSSCCGGGCC-TTHHHHHHHHHH-TTSSHHHHGGGHHHHHHHHHHHHHHHHT---SSSE
T ss_pred cccCCcccccchhccccccccccccccccCC-hHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHH---hCCC
Confidence 2211 1 1 11 1123565555 999999999998 9999999999999999999999999976 3357
Q ss_pred ccHHHHH-HHHHhhhhhhhhccccCCC
Q 036759 141 VDISAKL-SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 141 ~d~~~~~-~~~~~~~i~~~~fG~~~~~ 166 (176)
+|+...+ ..+++++|+++ ||.+.++
T Consensus 151 ~d~~~~~~~~~~~~vi~~~-fG~~~~~ 176 (428)
T 1cpt_A 151 CDFMTDCALYYPLHVVMTA-LGVPEDD 176 (428)
T ss_dssp EEHHHHTTTTHHHHHHHHH-HTCCGGG
T ss_pred eehHHHHHhhhHHHHHHHH-cCCCHhH
Confidence 9998554 67999999999 9987653
No 37
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2, anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A {Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A* 2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Probab=99.82 E-value=5.1e-20 Score=136.58 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=118.7
Q ss_pred CCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEec-CCee-EEEeccHHHHH-HHHhCCccccCCCchhhhh--
Q 036759 4 ILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRL-GLMT-TIVVSSPQAAE-FLKTHDLIFASRPPLQATK-- 78 (176)
Q Consensus 4 ~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~-~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~-- 78 (176)
+.+|+|+++|+.++ +..+|+.++.+++ +||||+++.+ ++.+ .|+++++++++ ||.+ ..|.+++......
T Consensus 8 ~~~~~~~~~p~~~~---~~~~p~~~~~~l~-~~Gpv~~~~~~~g~~p~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~ 81 (406)
T 1s1f_A 8 QAVPPVRDWPAVDL---PGSDFDPVLTELM-REGPVTRISLPNGEGWAWLVTRHDDVRLVTND--PRFGREAVMDRQVTR 81 (406)
T ss_dssp CCSCCEEECCCCCC---CTTCCCHHHHHHH-HHCSEEEEECSBSBSCEEEECSHHHHHHHHTC--TTEESTTTTTTTBCB
T ss_pred hhccCCCCCCCCcc---cccCchHHHHHHH-hcCCeeeeccCCCcccEEEEcCHHHHHHHHcC--CCccCCcCCCCCccc
Confidence 56788888888777 3478999999995 7999999986 5666 99999999999 9965 3576665321111
Q ss_pred --H-HhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhh
Q 036759 79 --Y-ISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANM 154 (176)
Q Consensus 79 --~-~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~ 154 (176)
. ....+.++++.+ |+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+ .++++|+..++ ..+++++
T Consensus 82 ~~~~~~~~~~~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v 156 (406)
T 1s1f_A 82 LAPHFIPARGAVGFLD-PPDHTRLRRSVA-AAFTARGVERVRERSRGMLDELVDAMLR---AGPPADLTEAVLSPFPIAV 156 (406)
T ss_dssp SSSSCSSCTTSGGGCC-TTHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTHHHHHH
T ss_pred ccccccccccccccCC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHhhHhHHHH
Confidence 1 111245666665 999999999999 9999999999999999999999999985 24589998766 5799999
Q ss_pred hhhhhccccCCC
Q 036759 155 TCRMVLGKKRSD 166 (176)
Q Consensus 155 i~~~~fG~~~~~ 166 (176)
++. +||.+.++
T Consensus 157 i~~-~~G~~~~~ 167 (406)
T 1s1f_A 157 ICE-LMGVPATD 167 (406)
T ss_dssp HHH-HHTCCGGG
T ss_pred HHH-HhCCCHHH
Confidence 999 59987653
No 38
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron, metal-binding, oxidoreductase, substrate-soaking, cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB: 1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A* 2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A* 1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Probab=99.81 E-value=9.2e-20 Score=135.56 Aligned_cols=153 Identities=13% Similarity=0.051 Sum_probs=118.2
Q ss_pred CCCCCCCCCCCcee--ccccc-----CCCCchHHHHHHHHhhC--CeEEEecCCeeEEEeccHHHHH-HHHhCCccccCC
Q 036759 2 RKILPPGPKGFPIV--GCLHL-----LGKFPPRALHKLAKIYG--PIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASR 71 (176)
Q Consensus 2 ~~~~ppgp~~~p~~--G~~~~-----~~~~~~~~~~~~~~~yg--~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~ 71 (176)
+.++||||.+.|.. +.+.. +..+++.++.+|+ +|| ||+++...+ +.|+++++++++ +|.+ ...|+++
T Consensus 9 ~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~p~~~~~~l~-~~G~~pv~~~~~~g-~~vvv~~~~~v~~vl~~-~~~f~~~ 85 (415)
T 2zwu_A 9 NANLAPLPPHVPEHLVFDFDMYNPSNLSAGVQEAWAVLQ-ESNVPDLVWTRCNG-GHWIATRGQLIREAYED-YRHFSSE 85 (415)
T ss_dssp --CCCCCCTTSCGGGBCCCCTTSCTTGGGCHHHHHHGGG-STTSCSEEEECGGG-CEEEECSHHHHHHHHHC-TTTEETT
T ss_pred ccccCCCCCCCCcccccccCcCChhhcccChHHHHHHHH-hcCCCCeEEecCCC-CeEEEcCHHHHHHHHcC-ccccCCC
Confidence 56899999998864 43211 2357889999995 799 999998333 699999999999 9964 4467776
Q ss_pred C-chhhhhHHhhcCcc-eEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-H
Q 036759 72 P-PLQATKYISYQQKN-FAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-S 148 (176)
Q Consensus 72 ~-~~~~~~~~~~~~~~-~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 148 (176)
+ ...... ...+.+ +++.+ |+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+. +++|+..++ .
T Consensus 86 ~~~~~~~~--~~~~~~~l~~~~-g~~~~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~~~ 157 (415)
T 2zwu_A 86 CPFIPREA--GEAYDFIPTSMD-PPEQRQFRALAN-QVVGMPVVDKLENRIQELACSLIESLRPQ----GQCNFTEDYAE 157 (415)
T ss_dssp SCSSSHHH--HHHCCCTTTTCC-TTTTHHHHHHHH-HHHSHHHHHHHHHHHHHHHHHHHHHHGGG----TEEEHHHHTTT
T ss_pred cccCCCCc--cccccccCccCC-CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHH
Confidence 5 222221 111345 66665 999999999998 99999999999999999999999999763 379999765 7
Q ss_pred HHHhhhhhhhhccccCCC
Q 036759 149 AVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 149 ~~~~~~i~~~~fG~~~~~ 166 (176)
.+++++++++ ||.++++
T Consensus 158 ~~~~~vi~~~-~G~~~~~ 174 (415)
T 2zwu_A 158 PFPIRIFMLL-AGLPEED 174 (415)
T ss_dssp HHHHHHHHHH-HTCCGGG
T ss_pred HHHHHHHHHH-cCCCHHH
Confidence 8999999999 9998753
No 39
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=99.80 E-value=4.3e-20 Score=139.20 Aligned_cols=154 Identities=15% Similarity=0.114 Sum_probs=115.0
Q ss_pred CCCCCCCCCC-CceecccccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH
Q 036759 2 RKILPPGPKG-FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY 79 (176)
Q Consensus 2 ~~~~ppgp~~-~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~ 79 (176)
+.+.||||++ +|++||++.+..+++.++.+|+++|||||++++++.++++++++++++ ++.+... ++.++. ....
T Consensus 16 ~~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~il~~~~~-~~~~~~--~~~~ 92 (475)
T 3b98_A 16 RRNEPPLDKGMIPWLGHALEFGKDAAKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAVLSDVAS-LDQTSY--AQVL 92 (475)
T ss_dssp CTTCCCEECCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHHHTCTTT-EESHHH--HHHH
T ss_pred CCCCCCCCCCCcchHHhHHHHhhCHHHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHHHcCccc-CCchHH--HHHH
Confidence 4578999987 999999988877899999999999999999999999999999999999 9965432 332221 1111
Q ss_pred Hh-hcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHh-c-CCCcccHHHHHHHHHhhhhh
Q 036759 80 IS-YQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAA-R-APCVVDISAKLSAVSANMTC 156 (176)
Q Consensus 80 ~~-~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~d~~~~~~~~~~~~i~ 156 (176)
.. ..+.+++..+ ++.| |+++. ++|++..++.+.+.+.+++..+++.+.... . ....+++...+..+++++++
T Consensus 93 ~~~~~g~~~~~~~-~~~~---R~~~~-~~f~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (475)
T 3b98_A 93 MKRIFNMILPSHN-PESE---KKRAE-MHFQGASLTQLSNSMQNNLRLLMTPSEMGLKTSEWKKDGLFNLCYSLLFKTGY 167 (475)
T ss_dssp HHHTTCCCCTTCC-HHHH---HHHHH-HHTSHHHHHHHHHHHHHHHHHHSSTTTTTCSSCSCEEEEHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCC-hHHH---HHHHH-HHcChhhHHHHHHHHHHHHHHHHhhcccccCCCCceeehHHHHHHHHHHHHhh
Confidence 11 1234544443 6554 67887 899999999999999999998888764421 0 11246788888888888888
Q ss_pred hhhcccc
Q 036759 157 RMVLGKK 163 (176)
Q Consensus 157 ~~~fG~~ 163 (176)
...||.+
T Consensus 168 ~~~~g~~ 174 (475)
T 3b98_A 168 LTVFGAE 174 (475)
T ss_dssp HHHHCCT
T ss_pred hheeCCc
Confidence 8888854
No 40
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding; HET: HEM; 2.30A {Streptomyces avermitilis}
Probab=99.80 E-value=5e-19 Score=131.34 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=107.1
Q ss_pred cCCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCc---hhh---hhHH-hhcCcceEec
Q 036759 20 LLGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPP---LQA---TKYI-SYQQKNFAMA 90 (176)
Q Consensus 20 ~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~---~~~---~~~~-~~~~~~~~~~ 90 (176)
.+..+|+..+.+| ++||||+++++ ++.+.|+++++++++ +|.++ .+.+++. +.. .... ...+.++++.
T Consensus 21 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (408)
T 3abb_A 21 TCPYQPPKAYEER-RGESPLTQVTLFDGRPAWLITGHAEGRALLVDP--RLSSDWGHPDFPVVVRRTEDRGGLAFPLIGV 97 (408)
T ss_dssp SSTTSCCHHHHHH-CCSSSEEEEECTTSCEEEEECCHHHHHHHHTCT--TEECCTTSTTCCCCC---------CCTTTTC
T ss_pred ccccCchHHHHHH-HhcCCeeeeecCCCCcEEEEeCHHHHHHHHcCC--CcccccccccccccccCCccccccccccccC
Confidence 3557899999999 89999999997 788999999999999 99654 2444332 111 1100 0012355555
Q ss_pred CCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHhhhhhhhhccccCC
Q 036759 91 PYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AVSANMTCRMVLGKKRS 165 (176)
Q Consensus 91 ~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~~~~ 165 (176)
+|+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.. .+.++|+..++. .+++++++. +||.+.+
T Consensus 98 -~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 167 (408)
T 3abb_A 98 -DDPVHARQRRMLI-PSFGVKRMNAIRPRLQSLVDRLLDDMLA---KGPGADLVSAFALPVPSVAICE-LLGVPYG 167 (408)
T ss_dssp -CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred -CchHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 5999999999999 9999999999999999999999999985 456899998876 599999997 6998764
No 41
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes teichomyceticus} SCOP: a.104.1.0 PDB: 3o1a_A*
Probab=99.79 E-value=4e-19 Score=130.81 Aligned_cols=139 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecCC----eeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChh
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLGL----MTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSY 95 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~~----~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 95 (176)
+..+|+.++.++ ++||||+++++++ .++|+++||++++ +| ++...|++++...........+.++ +..+|+.
T Consensus 10 ~~~~p~~~~~~l-r~yGpv~~~~~~~~~~g~~~vvv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~-~~~~g~~ 86 (384)
T 3oo3_A 10 LRLDPVPEFEEL-QKAGPLHEYDTEPGMDGRKQWLVTGHDEVRAIL-ADHERFSSMRPVDDEADRALLPGIL-QAYDPPD 86 (384)
T ss_dssp ETTEECHHHHHH-HHTCSEECCCCC------CEEEECCHHHHHHHH-HCTTTEECSCCCC-----CCCTTCG-GGCCTTH
T ss_pred cccChhHHHHHH-HhcCCeeecccccccCCCCEEEEcCHHHHHHHH-hCchhccCCcccccccccccccccc-ccCCChh
Confidence 347899999999 5999999999876 7899999999999 99 4556788776543222212222334 4445999
Q ss_pred HHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccccCCC
Q 036759 96 WRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 96 ~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~~~~ 166 (176)
|+.+|++++ ++|++.+++.+.+.+.+.++++++.|.+ .++++|+..++...+.++++..+||.+.++
T Consensus 87 ~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~v~~~~~G~~~~~ 153 (384)
T 3oo3_A 87 HTRLRRTVA-PAYSARRMERLRPRIEEIVEECLDDFES---VGAPVDFVRHAAWPIPAYIACEFLGVPRDD 153 (384)
T ss_dssp HHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---SCSSEEHHHHTTTHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 999999998 9999999999999999999999999976 467899999999888777777789987653
No 42
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=99.78 E-value=1.9e-18 Score=128.54 Aligned_cols=137 Identities=17% Similarity=0.208 Sum_probs=110.5
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHhCCccccCCCchhhh---hH-H---hhcCcceEecC
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT---KY-I---SYQQKNFAMAP 91 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~---~~-~---~~~~~~~~~~~ 91 (176)
+..+|+.++.+|+++ |||++++++ |.+.|+++++++++ ||.++ .|++++....+ .. . ...+.+++..+
T Consensus 27 ~~~dp~~~~~~l~~~-Gpv~~~~~~~g~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 103 (417)
T 3tyw_A 27 CPFAAPAEYAALRTD-DPVARVTLPTRREAWVVTRYDDVRELLSDP--RVSADIRRPGFPALGEGEQEAGARFRPFIRTD 103 (417)
T ss_dssp STTSCCTHHHHHHHT-CTEEEEECTTSCEEEEECCHHHHHHHHHCT--TEECCSSSTTCCCSSTTTSTTSSSCCCGGGCC
T ss_pred cccCchHHHHHHHhh-CCeeeeecCCCCCeEEEcCHHHHHHHHcCC--CcccCCccccccccccccccccccccchhhcC
Confidence 457999999999988 999999986 58999999999999 99765 56654321111 11 0 01234566565
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~~ 166 (176)
|+.|+++|++++ ++|++.+++.+.+.+.+++.++++.|.+ .+.++|+..++ ..+++++++.+ ||.++++
T Consensus 104 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~g~~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 173 (417)
T 3tyw_A 104 -APEHTRYRRMLL-PAFTVRRVRAMRPAVQARVDEILDGMLA---AGGPVDLVSAYANAVSTSVICEL-LGIPRHD 173 (417)
T ss_dssp -HHHHHHHHHHHG-GGGCHHHHHHTHHHHHHHHHHHHHHHHH---HCSSEEHHHHTHHHHHHHHHHHH-HTCCTTT
T ss_pred -CcHHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 999999999998 9999999999999999999999999987 35679999987 58999999997 8998764
No 43
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide, filipi metal-binding, oxidoreductase-antibiotic complex; HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB: 3e5j_A* 3e5k_A* 3e5l_A*
Probab=99.78 E-value=1e-18 Score=129.53 Aligned_cols=136 Identities=14% Similarity=0.217 Sum_probs=108.2
Q ss_pred CCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCc--h-hhhhHHhh--cCcceEecCCC
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPP--L-QATKYISY--QQKNFAMAPYG 93 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~--~-~~~~~~~~--~~~~~~~~~~g 93 (176)
+..+|+.++.+| ++||||+++++ ++.+.|+++++++++ +|.++ .|++++. . ..+..... .+.++++. +|
T Consensus 17 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g 92 (403)
T 3aba_A 17 CPFLPPDGIADI-RAAAPVTRATFTSGHEAWLVTGYEEVRALLRDS--SFSVQVPHALHTQDGVVTQKPGRGSLLWQ-DE 92 (403)
T ss_dssp STTSCCTTHHHH-HHHCSEEEEECTTSCEEEEECCHHHHHHHHHCT--TEESCCSCCTTSSSCCCCCCCCTTCCTTC-CT
T ss_pred cccChhHHHHHH-HhcCCeeeeccCCCceEEEEcCHHHHHHHHcCC--CcccccccccccccccccccccccccccC-Cc
Confidence 457899999999 89999999997 788999999999999 99764 4666532 1 11100111 23456555 49
Q ss_pred hhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 94 SYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 94 ~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+.|+++|++++ ++|++.+++.+.+.+.+.++++++.|.+ .++++|+..++ ..+++++++. +||.+.+
T Consensus 93 ~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 160 (403)
T 3aba_A 93 PEHTSDRKLLA-KEFTVRRMQALRPNIQRIVDEHLDAIEA---RGGPVDLVKTFANAVPSMVISD-LFGVPVE 160 (403)
T ss_dssp THHHHHHHHHH-HHSCHHHHHTTHHHHHHHHHHHHHHHHH---HCSCEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred hhHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999999999 9999999999999999999999999985 24679998766 5799999998 6998765
No 44
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A {Streptomyces natalensis} PDB: 2x9p_A*
Probab=99.75 E-value=1e-17 Score=124.23 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=108.2
Q ss_pred CCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCchhh-hhHHhhcCcc--eEecCCC--
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQA-TKYISYQQKN--FAMAPYG-- 93 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~g-- 93 (176)
+..+|+.++.++ ++||||+++++ ++.+.|+++++++++ ||.++ .|.+++.... ..... .+.+ +++.+ |
T Consensus 24 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~-~~~~~~l~~~~-g~~ 98 (404)
T 2xbk_A 24 KMLKLSPLLRAL-QDRGPIHRVRTPAGDEAWLVTRHAELKQLLHDE--RIGRTHPDPPSAAQYV-RSPFLDLLISD-ADA 98 (404)
T ss_dssp BTTBCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHTTCT--TEESBCSSGGGSCCSS-CCHHHHTTCBC-SCH
T ss_pred cccCccHHHHHH-HhhCCEeeeccCCCceEEEEcCHHHHHHHHcCC--CCCCCccccccCCccc-ccccccceeeC-CCC
Confidence 446899999999 89999999996 788999999999999 99653 4666543211 11111 1344 55555 9
Q ss_pred ----hhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 94 ----SYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 94 ----~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+.|+++|++++ ++|++.+++.+.+.+.+++.++++.|.+ .+.++|+..++ ..+++++++. +||.+.+
T Consensus 99 ~~~~~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~g~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 170 (404)
T 2xbk_A 99 ESGRRQHAETRRLLT-PLFSARRVLEMQPKVEEAADTLLDAFIA---QGPPGDLHGELTVPFALTVLCE-VIGVPPQ 170 (404)
T ss_dssp HHHHHHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---TCSSEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred CCCCchHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCeeHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999999 9999999999999999999999999985 45689998766 5699999998 7898764
No 45
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox oxidoreductase; HET: HEM; 1.75A {Pseudonocardia autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Probab=99.75 E-value=2.8e-18 Score=127.41 Aligned_cols=135 Identities=15% Similarity=0.137 Sum_probs=107.9
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhh-----hHHhhcCcceEecCCCh
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT-----KYISYQQKNFAMAPYGS 94 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~ 94 (176)
+..+|+.++.+| ++||||+++++++.+.|+++++++++ +|.++ .|++++..... ......+.+++.. +|+
T Consensus 18 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~ 93 (411)
T 3a4g_A 18 FWQNPHPAYAAL-RAEDPVRKLALPDGPVWLLTRYADVREAFVDP--RLSKDWRHTLPEDQRADMPATPTPMMILM-DPP 93 (411)
T ss_dssp GTTCCHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHTCT--TEESCGGGGSCGGGCTTCCSCSSCCGGGC-CTT
T ss_pred hhcCchHHHHHH-HhcCCeeeccCCCCCEEEEecHHHHHHHHhCC--CcccccccccccccccccCcccccccccC-Cch
Confidence 457899999999 89999999999888999999999999 99764 37766532110 1111124556555 499
Q ss_pred hHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHhhhhhhhhccccCC
Q 036759 95 YWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK-LSAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 95 ~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~~~~ 165 (176)
.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+ ++++|+... ...+++++|+.+ ||.+.+
T Consensus 94 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~vd~~~~~~~~~~~~vi~~~-~G~~~~ 159 (411)
T 3a4g_A 94 DHTRLRKLVG-RSFTVRRMNELEPRITEIADGLLAGLPT----DGPVDLMREYAFQIPVQVICEL-LGVPAE 159 (411)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHSCS----SSCEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh----cCCccHHHHHHHHhHHHHHHHH-hCCCHH
Confidence 9999999999 9999999999999999999999999864 257999755 468999999975 898765
No 46
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase; HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.75 E-value=5.6e-18 Score=125.68 Aligned_cols=139 Identities=19% Similarity=0.258 Sum_probs=108.4
Q ss_pred cCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCc--hhhh-hH------Hh-hcCcceE
Q 036759 20 LLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPP--LQAT-KY------IS-YQQKNFA 88 (176)
Q Consensus 20 ~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~--~~~~-~~------~~-~~~~~~~ 88 (176)
.+..+++..+.+| ++||||+++++++.+.|+++|+++++ ||.++. +++++. +... .. .. ..+.+++
T Consensus 12 ~~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 88 (408)
T 1odo_A 12 PTGADHHTEHRTL-REGGPATWVDVLGVQAWSVSDPVLLKQLLTSSD--VSKDARAHWPAFGEVVGTWPLALWVAVENMF 88 (408)
T ss_dssp TTCTTHHHHHHHH-HTTCSEEEEEETTEEEEEECCHHHHHHHTTCTT--EESCHHHHCTTHHHHTTTCTTTHHHHCCSGG
T ss_pred cccCChHHHHHHH-HHhCCeEEeccCCCCEEEECCHHHHHHHHcCCC--ccccccccccccccccccccccccccccccc
Confidence 4557899999999 99999999998888999999999999 996542 343321 0100 00 00 0134555
Q ss_pred ecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHhhhhhhhhccccCC
Q 036759 89 MAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AVSANMTCRMVLGKKRS 165 (176)
Q Consensus 89 ~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~~~~ 165 (176)
.. +|+.|+++|++++ ++|++.+++.+.+.+.++++++++.|.+.. .++++|+..++. .+++++|+. +||.+.+
T Consensus 89 ~~-~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~~-~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 162 (408)
T 1odo_A 89 TA-YGPNHRKLRRLVA-PAFSARRVDAMRPAVEAMVTGLVDRLAELP-AGEPVDLRQELAYPLPIAVIGH-LMGVPQD 162 (408)
T ss_dssp GC-CHHHHHHHHHTTG-GGGSHHHHHHHHHHHHHHHHHHHHHHHHSC-TTSCEEHHHHTTTHHHHHHHHH-HHTCCHH
T ss_pred cc-CChHHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCcchHHHHhhhhHHHHHHH-HhCCCHH
Confidence 55 4999999999998 999999999999999999999999998641 356899998886 599999996 6898654
No 47
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin, oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A* 1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Probab=99.75 E-value=7e-18 Score=125.01 Aligned_cols=135 Identities=18% Similarity=0.256 Sum_probs=108.4
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCch--h----------hh-hHH-hhcCc
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPL--Q----------AT-KYI-SYQQK 85 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~--~----------~~-~~~-~~~~~ 85 (176)
+..+|+.++.+| ++||||+++++++.+.|++++++.++ +|.++ .|++++.. . .. ... ...+.
T Consensus 12 ~~~~p~~~~~~l-~~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (404)
T 1z8o_A 12 FHVDWYRTYAEL-RETAPVTPVRFLGQDAWLVTGYDEAKAALSDL--RLSSDPKKKYPGVEVEFPAYLGFPEDVRNYFAT 88 (404)
T ss_dssp GTSSHHHHHHHH-HHHCSEEEEEETTEEEEEECSHHHHHHHHHCT--TEECCTTCCCTTCCCCCGGGTTCCHHHHHHHSS
T ss_pred cccCcHHHHHHH-HhcCCeeeecCCCceEEEEcCHHHHHHHHcCC--Cccccccccccccccccccccccccchhhhccc
Confidence 446899999999 89999999999888999999999999 99765 56665432 1 11 110 01235
Q ss_pred ceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccC
Q 036759 86 NFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKR 164 (176)
Q Consensus 86 ~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~ 164 (176)
+++..+ |+.|+.+|++++ ++|++.+++.+.+.+.+.++++++.|.+ ++++|+..++ ..+++++|+.+ ||.+.
T Consensus 89 ~l~~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~ 161 (404)
T 1z8o_A 89 NMGTSD-PPTHTRLRKLVS-QEFTVRRVEAMRPRVEQITAELLDEVGD----SGVVDIVDRFAHPLPIKVICEL-LGVDE 161 (404)
T ss_dssp SGGGCC-TTHHHHHHHHHH-TTSCHHHHHHTHHHHHHHHHHHHHTSCS----SSEEEHHHHTTTHHHHHHHHHH-TTCCG
T ss_pred ccccCC-CcHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhhhh----cCCcchHHHHhHHHHHHHHHHH-hCCCH
Confidence 666565 999999999998 9999999999999999999999998864 4689998765 68999999985 89876
Q ss_pred C
Q 036759 165 S 165 (176)
Q Consensus 165 ~ 165 (176)
+
T Consensus 162 ~ 162 (404)
T 1z8o_A 162 K 162 (404)
T ss_dssp G
T ss_pred H
Confidence 4
No 48
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding, oxidoreductase, omega-hydroxylation, iron, heme, fatty acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium tuberculosis} PDB: 2wm4_A*
Probab=99.75 E-value=5.6e-18 Score=126.68 Aligned_cols=138 Identities=13% Similarity=0.169 Sum_probs=109.9
Q ss_pred CCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHhCCccccCCCch--h-hhhHHhhcCcceEecC
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKTHDLIFASRPPL--Q-ATKYISYQQKNFAMAP 91 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~ 91 (176)
.+|+.++.+|+ +||||+++.++ +.+.|+++++++++ ||.+. ..|++++.. . ....+...+.++++.+
T Consensus 44 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~~~~g~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~d 121 (435)
T 2wm5_A 44 DVRDGAFATLR-REAPISFWPTIELPGFVAGNGHWALTKYDDVFYASRHP-DIFSSYPNITINDQTPELAEYFGSMIVLD 121 (435)
T ss_dssp HHHHHHHHHHH-HHCSEEEECCCCC---CCCCCEEEECSHHHHHHHHHCT-TTEECSSCCSSSCCCHHHHHHHHGGGGCC
T ss_pred CChhHHHHHHH-hcCCeEecccccccccCCCCCeEEEcCHHHHHHHHcCc-ccccCccccccCccccchhhhccccccCC
Confidence 46888999995 68999999885 66899999999999 99764 467776531 1 1122221135666665
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~~ 166 (176)
|+.|+.+|++++ ++|++.+++.+.+.+.+.+.++++.|.+.. .+.++|+..++ ..+++++++++ ||.++++
T Consensus 122 -g~~h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~~-~~~~vd~~~~~~~~~~~~vi~~~-~G~~~~~ 193 (435)
T 2wm5_A 122 -DPRHQRLRSIVS-RAFTPKVVARIEAAVRDRAHRLVSSMIANN-PDRQADLVSELAGPLPLQIICDM-MGIPKAD 193 (435)
T ss_dssp -TTHHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEHHHHTTTHHHHHHHHHH-HTCCGGG
T ss_pred -cHHHHHHHHHhH-HhhCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCcEehHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 999999999998 999999999999999999999999998752 23479998766 78999999999 9998753
No 49
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis; HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB: 2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Probab=99.74 E-value=8.2e-18 Score=125.16 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCch-hhhhHHhh--cCcceEecCCChh
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPPL-QATKYISY--QQKNFAMAPYGSY 95 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~g~~ 95 (176)
+..+|+.++.+| ++||||+++++ ++.+.|+++++++++ ||.++ .|.+++.. ..+..+.. .+.++++. +|+.
T Consensus 35 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~i~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~ 110 (417)
T 2y5n_A 35 HGLTLAGRYGEL-QETEPVSRVRPPYGEEAWLVTRYEDVRAVLGDG--RFVRGPSMTRDEPRTRPEMVKGGLLSM-DPPE 110 (417)
T ss_dssp SSCCCCHHHHHH-HHHCSEEEEECSBSCCEEEECSHHHHHHHHTCT--TEESGGGGTSCCCBSSSSCCCCSGGGC-CTTH
T ss_pred hccCchHHHHHH-HhcCCeEeeccCCCceEEEECCHHHHHHHHcCC--CcccCccccccccccCcccccccCccC-CchH
Confidence 457899999999 89999999997 788999999999999 99653 45554322 11110111 23456555 4999
Q ss_pred HHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 96 WRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 96 ~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
|+++|++++ ++|++.+++.+.+.+.++++++++.|.+. +.++|+..++ ..+++++|+. +||.+.+
T Consensus 111 h~~~R~~l~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~---~~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 176 (417)
T 2y5n_A 111 HSRLRRLVV-KAFTARRAESLRPRAREIAHELVDQMAAT---GQPADLVAMFARQLPVRVICE-LLGVPSA 176 (417)
T ss_dssp HHHHHHHHH-HHSCHHHHHHTHHHHHHHHHHHHHHHHHH---CSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeeHHHHHHHHhHHHHHHH-HcCCCHH
Confidence 999999999 99999999999999999999999999852 2279998776 4699999998 6898765
No 50
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus subtilis} SCOP: a.104.1.0 PDB: 3ejd_B* 3eje_B*
Probab=99.74 E-value=6.7e-18 Score=125.04 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=107.0
Q ss_pred CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhh----hhHHhhcCcceEecCCChhH
Q 036759 22 GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQA----TKYISYQQKNFAMAPYGSYW 96 (176)
Q Consensus 22 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~ 96 (176)
..+|+.++.++ ++||||+++.+++.+.|++++++.++ +|.++ ..+++++.... .......+.++++.+ |+.|
T Consensus 12 ~~~p~~~~~~~-r~yGpv~~~~~~~~~~vvv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~h 88 (404)
T 3ejb_B 12 LKNPYSFYDTL-RAVHPIYKGSFLKYPGWYVTGYEETAAILKDA-RFKVRTPLPESSTKYQDLSHVQNQMMLFQN-QPDH 88 (404)
T ss_dssp HHCHHHHHHHH-HHHCSEEEEEETTEEEEEECCHHHHHHHHHCT-TEECCCSSCTTCCTTHHHHHHHHTSGGGCC-TTHH
T ss_pred ccCchHHHHHH-HhhCCEeeccCCCCCEEEEecHHHHHHHHhCc-ccccCcccccccccccchhhhhhcchhhcC-CchH
Confidence 36889999998 58999999999999999999999999 99766 56666653111 011111234665565 9999
Q ss_pred HHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 97 RKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 97 ~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+++|++++ ++|++.+++.+.+.+.+++..+++.|.+ ++.+|+...+ ..+++++++.+ ||.+.+
T Consensus 89 ~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 152 (404)
T 3ejb_B 89 RRLRTLAS-GAFTPRTTESYQPYIIETVHHLLDQVQG----KKKMEVISDFAFPLASFVIANI-IGVPEE 152 (404)
T ss_dssp HHHHHHHH-GGGSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTHHHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHhhh----cCCcchHHHHHHHHHHHHHHHH-cCCCHH
Confidence 99999998 9999999999999999999999998865 3578986554 56999999995 898764
No 51
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105, oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea recticatena}
Probab=99.73 E-value=1.8e-17 Score=123.17 Aligned_cols=137 Identities=21% Similarity=0.220 Sum_probs=108.1
Q ss_pred CCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCchhhh------hHHhh---cCcc-eE
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT------KYISY---QQKN-FA 88 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~------~~~~~---~~~~-~~ 88 (176)
+..+|+.++.+|+ +||||+++++ ++.+.|+++++++++ +|.+. .|++++..... ..... .+.+ ++
T Consensus 20 ~~~~p~~~~~~l~-~~Gpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (413)
T 2z36_A 20 CPFAPPAAYERLR-ERAPINKVRLTSGGQAWWVSGHEEARAVLADG--RFSSDKRKDGFPLFTLDAATLQQLRSQPPLML 96 (413)
T ss_dssp BTTBCCHHHHHHH-HHCSEEEEEETTSCEEEEECSHHHHHHHHHCT--TEECCTTSTTCCCSSCCHHHHHHHTTSCCCGG
T ss_pred cccCchHHHHHHH-HcCCeeEeecCCCceEEEEecHHHHHHHHcCC--CcccCccccCcccccccccccccccccccccc
Confidence 4568999999997 7899999997 788999999999999 99763 56665422111 11110 2456 55
Q ss_pred ecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHhhhhhhhhccccCC
Q 036759 89 MAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AVSANMTCRMVLGKKRS 165 (176)
Q Consensus 89 ~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~~~~ 165 (176)
+.+ |+.|+.+|++++ ++|++.+++.+.+.+.+++.++++.|.+. .++++|+...+. .+++++++.+ ||.+.+
T Consensus 97 ~~~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~--~~~~~d~~~~~~~~~~~~vi~~~-~G~~~~ 169 (413)
T 2z36_A 97 GMD-GAEHSAARRPVI-GEFTVKRLAALRPRIQDIVDHFIDDMLAT--DQRPVDLVQALSLPVPSLVICEL-LGVPYT 169 (413)
T ss_dssp GCC-HHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTTC--SCSSEEHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred ccC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccHHHHHhhhhHHHHHHHH-hCCCHH
Confidence 554 999999999999 99999999999999999999999999742 256899986664 6999999995 898765
No 52
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A {Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Probab=99.73 E-value=1.6e-17 Score=123.44 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=105.1
Q ss_pred CCchHHHHHHHHhhCCeEEEecCC--eeEEEeccHHHHH-HHHhCCccccCCCchhh----hhHHhhc-CcceEecCCCh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGL--MTTIVVSSPQAAE-FLKTHDLIFASRPPLQA----TKYISYQ-QKNFAMAPYGS 94 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~--~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~g~ 94 (176)
++|+.++.+++ +||||+++.+++ .+.|++++++.++ ||.+ ..|.+++.... ....... +.+++.. +|+
T Consensus 27 ~~p~~~~~~l~-~~Gpv~~~~~~~g~~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~-dg~ 102 (411)
T 2dkk_A 27 PEFDPVLAELM-REGPLTRVRLPHGEGWAWLATRYDDVKAITND--PRFGRAEVTQRQITRLAPHFKPRPGSLAFA-DQP 102 (411)
T ss_dssp SCCCHHHHHHH-TTCSEEEEECSBSBSCEEEECSHHHHHHHTTC--TTEESGGGGGSCBCBSSSCCCCCTTCSTTC-CTT
T ss_pred ccccHHHHHHH-hcCCeEeeecCCCceeEEEEcCHHHHHHHHcC--CCcccCCCCCCCccccccchhccccccccC-Cch
Confidence 45669999997 799999998754 6799999999999 9965 35665433210 0111001 3456555 499
Q ss_pred hHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHhhhhhhhhccccCC
Q 036759 95 YWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AVSANMTCRMVLGKKRS 165 (176)
Q Consensus 95 ~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~~~~ 165 (176)
.|+++|++++ ++|++.+++.+.+.+.+.++++++.|.+. +.++|+..++. .+++++|+. +||.+++
T Consensus 103 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~~---g~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 169 (411)
T 2dkk_A 103 DHNRLRRAVA-GAFTVGATKRLRPRAQEILDGLVDGILAE---GPPADLVERVLEPFPIAVVSE-VMGVPAA 169 (411)
T ss_dssp HHHHHHHHHG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHH---CSCEEHHHHTTTHHHHHHHHH-HHTCCSS
T ss_pred HHHHHHHHhh-HhhCHHHHHHHHHHHHHHHHHHHHHHHhc---CCCeehHHHHHHHHHHHHHHH-HhCCCHH
Confidence 9999999999 99999999999999999999999999873 45799998775 699999999 5998875
No 53
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans}
Probab=99.73 E-value=1.4e-17 Score=125.08 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=106.2
Q ss_pred chHHHHHHHHhhCCeE--EEe-cCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhH---------Hh----hcCcce
Q 036759 25 PPRALHKLAKIYGPIM--HLR-LGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKY---------IS----YQQKNF 87 (176)
Q Consensus 25 ~~~~~~~~~~~yg~i~--~~~-~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~---------~~----~~~~~~ 87 (176)
|+.++.++ ++||||+ ++. +++.+.|+|+++++++ ++.+. ..|++++....... .. ..+.++
T Consensus 47 p~~~~~~l-r~~gPV~~~~~~~~g~~~~~vvt~~~~v~~vl~~~-~~fs~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~l 124 (450)
T 3tkt_A 47 LLDRFDAL-RAEAPVAKVVAPDDEHEPFWLVSSFDGVMKASKDN-ATFLNNPKSTVFTLRVGEMMAKAITGGSPHLVESL 124 (450)
T ss_dssp HHHHHHHH-HHHCSEEEECCTTCSSCCEEEECSHHHHHHHHHCT-TTEESSSSCSSCCCHHHHHHHHHHHTSCSCSSCCG
T ss_pred chHHHHHH-HhcCCeecccccCCCCCCEEEEecHHHHHHHHhCc-ccccCCCccccccccccccccccccccccccccCc
Confidence 78888888 6789999 888 6778999999999999 99655 56777654322110 00 012355
Q ss_pred EecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 88 AMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 88 ~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+..+ |+.|+++|++++ ++|++.+++.+.+.+.++++++++.|.+ .++++|+..++ ..+++++|+++ ||.+.+
T Consensus 125 ~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~~~~~dl~~~~~~~~~~~vi~~l-~G~~~~ 197 (450)
T 3tkt_A 125 VQMD-APKHPKLRRLTQ-DWFMPKNLARLDGEIRKIANEAIDRMLG---AGEEGDFMALVAAPYPLHVVMQI-LGVPPE 197 (450)
T ss_dssp GGCC-TTHHHHHHHHHH-TTTSHHHHGGGHHHHHHHHHHHHHHHHH---TCSEEEHHHHTTTHHHHHHHHHH-TTCCGG
T ss_pred ccCC-CHHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCEeeHHHHHHHHHHHHHHHH-cCCChh
Confidence 5554 999999999998 9999999999999999999999999987 35789998887 69999999996 897654
No 54
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM EDO; 1.37A {Citrobacter braakii} PDB: 4fmx_A* 4fyz_A* 1t2b_A* 3bdz_A* 3be0_A*
Probab=99.72 E-value=3.5e-18 Score=126.36 Aligned_cols=137 Identities=15% Similarity=0.073 Sum_probs=106.2
Q ss_pred cCCCCchHHHHHHHHhh--CCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhH
Q 036759 20 LLGKFPPRALHKLAKIY--GPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYW 96 (176)
Q Consensus 20 ~~~~~~~~~~~~~~~~y--g~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 96 (176)
.+..+|+.++.+|+++| |||+++.+++ +.|++++++.++ ++ ++...|++++...........+.+++.. +|+.|
T Consensus 16 ~~~~~p~~~~~~l~~~Y~~Gpv~~~~~~~-~~~vv~~~~~v~~vl-~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 92 (398)
T 4fb2_A 16 GPDGTPHAFFEALRDEAETTPIGWSEAYG-GHWVVAGYKEIQAVI-QNTKAFSNKGVTFPRYETGEFELMMAGQ-DDPVH 92 (398)
T ss_dssp CTTSSSHHHHHHHHHHHTTCSEEEECGGG-CEEEECSHHHHHHHH-TCCSSEEGGGCSSSCC----CCCTTTTC-CTTHH
T ss_pred hhhcChhHHHHHHHhcCCCCCeEEecCCC-CEEEEccHHHHHHHH-hChhhccCCcccccCCCCcccccCcccC-CchHH
Confidence 34579999999999999 9999999876 599999999999 99 4445677665432211111122233344 59999
Q ss_pred HHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 97 RKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 97 ~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+.+|+++. ++|++.+++.+.+.+.+++.++++.|.+. +.+|+...+ ..++++++++ +||.+.+
T Consensus 93 ~~~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 156 (398)
T 4fb2_A 93 KKYRQLVA-KPFSPEATDLFTEQLRQSTNDLIDARIEL----GEGDAATWLANEIPARLTAI-LLGLPPE 156 (398)
T ss_dssp HHHHHHHH-TTTCHHHHHTTHHHHHHHHHHHHHTTTTT----TEEEHCCCCCTTHHHHHHHH-HTTSCGG
T ss_pred HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHhhc----CCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 99999998 99999999999999999999999988652 468875544 6899999999 6897654
No 55
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB: 2z3u_A* 3a1l_A*
Probab=99.72 E-value=4.2e-17 Score=121.59 Aligned_cols=133 Identities=11% Similarity=0.114 Sum_probs=106.3
Q ss_pred CCchHHHHHHHHhhCCeEEEecC--CeeEEEeccHHHHH-HHHhCCccccCCCch--------h-hhh-----HHhhcCc
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLG--LMTTIVVSSPQAAE-FLKTHDLIFASRPPL--------Q-ATK-----YISYQQK 85 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~--------~-~~~-----~~~~~~~ 85 (176)
.+|+.++.+++ +||||+++++| +.+.|++++++.++ ||.++ .|++++.. . ... .....+.
T Consensus 20 ~~p~~~~~~l~-~~Gpv~~~~~g~~~~~~~vv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 2z3t_A 20 ADPYPVYRRYR-EAAPVHRTASGPGKPDTYYVFTYDDVVRVLSNR--RLGRNARVASGDTDTAPVPIPTEHRALRTVVEN 96 (425)
T ss_dssp HCCHHHHHHHH-HHCSEEEECCCSSCCCEEEECSHHHHHHHHHCT--TEESSCCCC---------------CHHHHHHTT
T ss_pred cChHHHHHHHH-hcCCeEeccccCCCCCeEEEcCHHHHHHHHcCC--Ccccccccccccccccccccccccccccccccc
Confidence 58999999986 59999999986 67899999999999 99764 67776531 1 100 0111235
Q ss_pred ceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccC
Q 036759 86 NFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKR 164 (176)
Q Consensus 86 ~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~ 164 (176)
++++.+ |+.|+.+|++++ ++|++.+++.+.+.+.+.+.++++.|.+ . +++|+..++ ..+++++|+.+ ||.+.
T Consensus 97 ~l~~~d-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-g~~dl~~~~~~~~~~~vi~~~-~G~~~ 169 (425)
T 2z3t_A 97 WLVFLD-PPHHTELRSLLT-TEFSPSIVTGLRPRIAELASALLDRLRA---Q-RRPDLVEGFAAPLPILVISAL-LGIPE 169 (425)
T ss_dssp CGGGCC-HHHHHHHHHHHH-GGGSHHHHHHHHHHHHHHHHHHHHHHTT---S-SSCBHHHHTTTHHHHHHHHHH-HTCCG
T ss_pred ccccCC-chHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCccHHHHHHHHHHHHHHHHH-hCCCH
Confidence 666665 999999999998 9999999999999999999999999975 2 379998755 78999999998 99876
Q ss_pred C
Q 036759 165 S 165 (176)
Q Consensus 165 ~ 165 (176)
+
T Consensus 170 ~ 170 (425)
T 2z3t_A 170 E 170 (425)
T ss_dssp G
T ss_pred H
Confidence 5
No 56
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide antibiotics, 12- and 14- carbon macrolactone monooxygenase, heme; HET: HEM; 1.92A {Streptomyces coelicolor} SCOP: a.104.1.1
Probab=99.71 E-value=2.9e-17 Score=122.01 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=106.9
Q ss_pred cCCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCC-chhhhh---------HHh-hc-Cc
Q 036759 20 LLGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRP-PLQATK---------YIS-YQ-QK 85 (176)
Q Consensus 20 ~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~-~~~~~~---------~~~-~~-~~ 85 (176)
.+..+|+..+.++ ++||||+++++ ++.+.|+++++++++ +|.++. +++++ .+.... .+. .. +.
T Consensus 14 ~~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (411)
T 1gwi_A 14 PFVTDLDGESARL-RAAGPLAAVELPGGVPVWAVTHHAEAKALLTDPR--LVKDINVWGAWRRGEIPADWPLIGLANPGR 90 (411)
T ss_dssp TTCSCHHHHHHHH-HHTCSEEEEEETTTEEEEEECSHHHHHHHHTCTT--EECCGGGCHHHHTTCSCTTCTTHHHHSCCS
T ss_pred cccCChHHHHHHH-HHhCCeeeeecCCCccEEEEeCHHHHHHHHcCCc--cccCcccccccccccCCcccchhhhhcccc
Confidence 3557899999999 89999999997 788999999999999 996543 34433 111100 000 01 34
Q ss_pred ceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH-HHHhhhhhhhhccccC
Q 036759 86 NFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS-AVSANMTCRMVLGKKR 164 (176)
Q Consensus 86 ~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~i~~~~fG~~~ 164 (176)
++++. +|+.|+.+|++++ ++|++.+++.+.+.+.+.++++++.|.+ .++++|+..++. .+++++++. +||.+.
T Consensus 91 ~l~~~-~g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~ 164 (411)
T 1gwi_A 91 SMLTV-DGAEHRRLRTLVA-QALTVRRVEHMRGRITELTDRLLDELPA---DGGVVDLKAAFAYPLPMYVVAD-LMGIEE 164 (411)
T ss_dssp SGGGC-CHHHHHHHHHHHT-TTSCHHHHHTTHHHHHHHHHHHHHTSCC---SCCCEEHHHHTTTHHHHHHHHH-HHTCCG
T ss_pred ccccC-CcHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcchHHHHhhHHHHHHHHH-HhCCCH
Confidence 55555 4999999999999 9999999999999999999999998863 356899998876 599999996 699876
Q ss_pred C
Q 036759 165 S 165 (176)
Q Consensus 165 ~ 165 (176)
+
T Consensus 165 ~ 165 (411)
T 1gwi_A 165 A 165 (411)
T ss_dssp G
T ss_pred H
Confidence 4
No 57
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase, metal-binding, oxidoreductase, hypothetical protein; HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB: 2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Probab=99.71 E-value=3.5e-17 Score=121.65 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=106.7
Q ss_pred CCchHHHHHHHHhhCCeE-----EEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh-hhh--HH-h-hcCcceEecC
Q 036759 23 KFPPRALHKLAKIYGPIM-----HLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ-ATK--YI-S-YQQKNFAMAP 91 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~-----~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~-~~~--~~-~-~~~~~~~~~~ 91 (176)
.+|+.++.+++ +||||+ ++.+ .+.|+++++++++ +|.++ ..|++++... ... .+ . ..+.++++.+
T Consensus 25 ~~p~~~~~~l~-~~Gpv~~~~~~~~~~--~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (414)
T 2uuq_A 25 PNPWPMYRALR-DHDPVHHVVPPQRPE--YDYYVLSRHADVWSAARDH-QTFSSAQGLTVNYGELEMIGLHDTPPMVMQD 100 (414)
T ss_dssp TCCHHHHHHHH-HHCSEEEECCTTCGG--GCEEEECSHHHHHHHHHCT-TTEESTTCSSSCTTHHHHHTCSSSCCGGGCC
T ss_pred cCchHHHHHHH-hcCCEEcccccccCC--CCEEEEcCHHHHHHHHcCc-hhccCCCCcccccCcccccccccccccccCC
Confidence 68999999995 689999 8876 5799999999999 99765 5677765432 111 22 2 2245676665
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHhhhhhhhhccccCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDIS-AKLSAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i~~~~fG~~~~ 165 (176)
|+.|+.+|++++ ++|++.+++.+.+.+.++++++++.|.+. +++|+. +.+..+++++++. +||.+++
T Consensus 101 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~~----~~vdl~~~~~~~~~~~vi~~-~~G~~~~ 168 (414)
T 2uuq_A 101 -PPVHTEFRKLVS-RGFTPRQVETVEPTVRKFVVERLEKLRAN----GGGDIVTELFKPLPSMVVAH-YLGVPEE 168 (414)
T ss_dssp -TTHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHHHHHHHHT----TEEEHHHHTTTHHHHHHHHH-HTTCCGG
T ss_pred -chhHHHHHHHhh-hhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCccHHHHHHHHhHHHHHHH-HhCCCHH
Confidence 999999999998 99999999999999999999999999873 369997 5567999999999 6898775
No 58
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase, metal-binding, AN biosynthesis, TIE-ROD mechanism of action; HET: HEM; 1.59A {Saccharopolyspora erythraea} PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Probab=99.71 E-value=1.7e-17 Score=123.24 Aligned_cols=129 Identities=15% Similarity=0.114 Sum_probs=100.6
Q ss_pred CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHHh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK 101 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~ 101 (176)
.+|+.++.++++ |||| +.++.+.+++++++.++ +|.+. ..|++++... .......+.+++..+ |+.|+.+|+
T Consensus 28 ~~p~~~~~~l~~-~gpv---~~~~~~~~vv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~~~~~~~~~~~~-g~~~~~~R~ 100 (411)
T 2jjn_A 28 TALLDWLGTMRE-KQPV---WQDRYGVWHVFRHADVQTVLRDT-ATFSSDPTRV-IEGASPTPGMIHEID-PPEHRALRK 100 (411)
T ss_dssp HHHHHHHHHHHH-HCSE---EECTTSCEEECSHHHHHHHHHCT-TTEESCGGGG-STTCCCCTTCGGGCC-TTHHHHHHH
T ss_pred cChHHHHHHHHH-hCCc---ccCCCCeEEECCHHHHHHHHcCc-ccccCccccc-CCcccccccccccCC-chHHHHHHH
Confidence 478889999976 9998 34556799999999999 99764 4677765321 111112234555555 999999999
Q ss_pred hhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHhhhhhhhhccccCCC
Q 036759 102 LCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK-LSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 102 ~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~~~~~ 166 (176)
+++ ++|++.+++.+.+.+.++++++++. . ++++|+... ...+++++|+++ ||.+.++
T Consensus 101 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~--~----~~~~d~~~~~~~~~~~~vi~~~-fG~~~~~ 158 (411)
T 2jjn_A 101 VVS-SAFTPRTISDLEPRIRDVTRSLLAD--A----GESFDLVDVLAFPLPVTIVAEL-LGLPPMD 158 (411)
T ss_dssp HHH-HHSCHHHHHTTHHHHHHHHHHHHHT--S----CSEEEHHHHTTTHHHHHHHHHH-HTCCSCC
T ss_pred Hhh-hhcCHHHHHHHHHHHHHHHHHHHhc--C----CCceeHHHHHHHHHHHHHHHHH-cCCCHHH
Confidence 998 9999999999999999999999987 2 347999855 468999999998 9998754
No 59
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM; 1.60A {Mycobacterium tuberculosis}
Probab=99.68 E-value=3.9e-17 Score=120.76 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=104.1
Q ss_pred CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHH
Q 036759 22 GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIR 100 (176)
Q Consensus 22 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R 100 (176)
..+|+.++.++++ ||||+++.. +.|+++++++++ +|.+. ..|++++... .... .+.++++.+ |+.|+.+|
T Consensus 17 ~~~p~~~~~~l~~-~Gpv~~~~~---~~vvv~~~~~v~~vl~~~-~~f~~~~~~~-~~~~--~~~~l~~~~-g~~h~~~R 87 (398)
T 2xkr_A 17 SREARAAYRWMRA-NQPVFRDRN---GLAAASTYQAVIDAERQP-ELFSNAGGIR-PDQP--ALPMMIDMD-DPAHLLRR 87 (398)
T ss_dssp CTTHHHHHHHHHH-HCSEEECTT---CCEEECSHHHHHHHHTCT-TTEESTTCSS-TTSC--CCSSGGGCC-TTHHHHHH
T ss_pred ccChhHHHHHHHh-cCCeeecCC---CeEEEecHHHHHHHHhCc-ccccCccccC-Cccc--ccccccccC-chHHHHHH
Confidence 3689999999987 999997652 699999999999 99654 3677765422 1111 234565555 99999999
Q ss_pred hhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHhhhhhhhhccccCCC
Q 036759 101 KLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK-LSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 101 ~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~~~~~ 166 (176)
++++ ++|++.+++.+.+.+.+.+.++++.|.+ . +.+|+... +..+++++|+++ ||.+.++
T Consensus 88 ~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~~ 148 (398)
T 2xkr_A 88 KLVN-AGFTRKRVKDKEASIAALCDTLIDAVCE---R-GECDFVRDLAAPLPMAVIGDM-LGVRPEQ 148 (398)
T ss_dssp HHHG-GGSCHHHHHTTHHHHHHHHHHHHHTTTT---T-SEEEHHHHTTTHHHHHHHHHH-HTCCGGG
T ss_pred HHhh-hhhCHHHHHHHHHHHHHHHHHHHHhhhh---c-CCccHHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 9998 9999999999999999999999999865 2 47999844 568999999998 9998653
No 60
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase, heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A {Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A* 1pkf_A*
Probab=99.68 E-value=2.1e-17 Score=122.97 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=105.6
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCc-----hh-h--hhHHhhc-CcceEec
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPP-----LQ-A--TKYISYQ-QKNFAMA 90 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~-----~~-~--~~~~~~~-~~~~~~~ 90 (176)
+..+|+.++.++ ++||||++ + ++.+.|+++++++++ ||.++. |++++. .. . ...+... +.++++.
T Consensus 24 ~~~~p~~~~~~l-~~~Gpv~~-~-~~~~~vvv~~~~~v~~vl~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (419)
T 1q5d_A 24 YAEDPFPAIERL-REATPIFY-W-DEGRSWVLTRYHDVSAVFRDER--FAVSREEWESSAEYSSAIPELSDMKKYGLFGL 98 (419)
T ss_dssp TTTCCHHHHHHH-HHHCSEEE-E-TTTTEEEECSHHHHHHHHTCTT--EECCGGGSTTHHHHHHSSGGGHHHHHHSTTTS
T ss_pred hhhChHHHHHHH-HhhCCccc-c-CCCCEEEEecHHHHHHHHcCCC--ccccccccccccccccccchhhhhcccccccC
Confidence 457899999999 68999998 5 667899999999999 997653 777651 11 1 0111111 2455555
Q ss_pred CCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHhhhhhhhhccccCCC
Q 036759 91 PYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK-LSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 91 ~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~~~~~ 166 (176)
+ |+.|+.+|++++ ++|++.+++.+.+.+.+++.++++.|.+ . +++|+... +..+++++|+.+ ||.+.++
T Consensus 99 ~-g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-~~~d~~~~~~~~~~~~vi~~~-fG~~~~~ 168 (419)
T 1q5d_A 99 P-PEDHARVRKLVN-PSFTSRAIDLLRAEIQRTVDQLLDARSG---Q-EEFDVVRDYAEGIPMRAISAL-LKVPAEC 168 (419)
T ss_dssp C-HHHHHHHHHHHG-GGGSHHHHGGGHHHHHHHHHHHHHHHTT---S-SCEETTTTTGGGSHHHHHHHH-TTCCGGG
T ss_pred C-chHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCCCHHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 5 999999999998 9999999999999999999999999875 2 37998765 489999999998 9987653
No 61
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein, vancomycin biosynthes carrier protein, oxidoreductase; HET: HEM; 2.10A {Amycolatopsis balhimycina}
Probab=99.68 E-value=1.9e-17 Score=123.14 Aligned_cols=134 Identities=17% Similarity=0.140 Sum_probs=103.5
Q ss_pred CCchHHHHHHHHhhCCeEEEecCC--eeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhh---c-CcceEecCCChh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGL--MTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISY---Q-QKNFAMAPYGSY 95 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~--~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~g~~ 95 (176)
.+|+.++.++++ ||||+++...| .+.|++++++.++ +|.+ ...|++++.......... . +.+++.. +|+.
T Consensus 37 ~dp~~~~~~lr~-~gpV~~~~~~g~~~~~~vv~~~~~v~~vl~~-~~~fs~~~~~~~~~~~~~~~~~~~~~l~~~-dg~~ 113 (415)
T 3mgx_A 37 LERHARWRELAA-EDAMVWSDPGSSPSGFWSVFSHRACAAVLAP-SAPLTSEYGMMIGFDRDHPDNSGGRMMVVS-EHEQ 113 (415)
T ss_dssp TTHHHHHHHHHH-HTCCEEECSSSSSSCEEEECSHHHHHHHSCT-TSSEECTTCSSTTCCSSSCCTTTTTSGGGC-CHHH
T ss_pred CChhHHHHHHHh-cCCEeeccCCCCcCCEEEEecHHHHHHHHhC-hhhhcCCccccccccccccccccCCCcccc-CcHH
Confidence 589999999986 89999986444 6899999999999 9944 345776654322111000 1 2345555 4999
Q ss_pred HHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 96 WRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 96 ~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
|+++|++++ ++|++.+++.+.+.+.+.+.++++.|.+ . +++|+..++ ..+++++|+. +||.+.+
T Consensus 114 h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~---~-~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 178 (415)
T 3mgx_A 114 HRKLRKLVG-PLLSRAAARKLAERVRIEVGDVLGRVLD---G-EVCDAATAIGPRIPAAVVCE-ILGVPAE 178 (415)
T ss_dssp HHHHHHHHG-GGSSHHHHHHSHHHHHHHHHHHTTTSSS---S-SCEESTTTTTTHHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHhH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---c-CCcchHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999999998 9999999999999999999999998865 2 478998877 6799999998 5786543
No 62
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena oxidoreductase; HET: HEM; 2.20A {Novosphingobium aromaticivorans} SCOP: a.104.1.0 PDB: 3lxi_A*
Probab=99.67 E-value=1.5e-16 Score=118.43 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=102.9
Q ss_pred CCCchHHHHHHHHhhC-CeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHH
Q 036759 22 GKFPPRALHKLAKIYG-PIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKI 99 (176)
Q Consensus 22 ~~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 99 (176)
..+|+.++.++++.+| ||+++..++ +.|++++++.++ ||. +...|++++...........+.+++..+ |+.|+++
T Consensus 37 ~~dp~~~~~~lr~~~G~pv~~~~~~~-~~~vv~~~~~v~~vl~-~~~~f~~~~~~~~~~~~~~~~~~~~~~d-g~~h~~~ 113 (421)
T 3lxh_A 37 EQGFHEAWKRVQQPDTPPLVWTPFTG-GHWIATRGTLIDEIYR-SPERFSSRVIWVPREAGEAYDMVPTKLD-PPEHTPY 113 (421)
T ss_dssp GGCHHHHHHHHCCTTCCSEEEESSTT-SEEEECSHHHHHHHHT-CTTTEETTCCSSSHHHHHHCCCTTTTCC-TTTHHHH
T ss_pred hcChhHHHHHHHhcCCCCeEeccCCC-CeEEEcCHHHHHHHHc-ChhhccCCcccCCcccccccccCCccCC-cHHHHHH
Confidence 3589999999987655 899998766 489999999999 994 4457777663222222222234555555 9999999
Q ss_pred HhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 100 RKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 100 R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
|++++ ++|++.+++.+.+.+.+.++++++.|.+ ++.+|+...+ ..++.++++.+ ||.+.+
T Consensus 114 R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~d~~~~~~~~~~~~v~~~~-~G~~~~ 174 (421)
T 3lxh_A 114 RKAID-KGLNLAEIRKLEDQIRTIAVEIIEGFAD----RGHCEFGSEFSTVFPVRVFLAL-AGLPVE 174 (421)
T ss_dssp HHHHH-HHHSHHHHHTTHHHHHHHHHHHHHTTTT----TSEEEHHHHTTTTHHHHHHHHH-HTCCGG
T ss_pred HHHHh-hhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHHHHHHHHHH-cCCCHH
Confidence 99998 9999999999999999999999998865 2478876555 66888888764 787654
No 63
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12; 1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Probab=99.67 E-value=2e-16 Score=117.67 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=102.8
Q ss_pred CCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHh--------hcCcceEecC
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYIS--------YQQKNFAMAP 91 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 91 (176)
+..+|+.++.++ ++||||+++.++ .|++++++.++ ||.+. ..+++++......... ..+.+++..+
T Consensus 27 ~~~~p~~~~~~l-r~~gpv~~~~~g---~~vv~~~~~v~~vl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 101 (418)
T 3r9b_A 27 TRADPYPIYDRI-RRGGPLALPEAN---LAVFSSFSDCDDVLRHP-SSCSDRTKSTIFQRQLAAETQPRPQGPASFLFLD 101 (418)
T ss_dssp GTTCCHHHHHHH-HHHCCEEEGGGT---EEEECSHHHHHHHHHCT-TEECCGGGCHHHHHHHC---------CCCGGGCC
T ss_pred hccCchHHHHHH-HhcCCEEECCCC---eEEEecHHHHHHHHcCc-ccccCcccccccccccccccccccccccchhhcC
Confidence 457999999999 578999998765 99999999999 99653 3344444322222211 1234555565
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~~ 166 (176)
|+.|+++|++++ ++|++++++.+.+.+.+.++++++ +.+ ++.+|+...+ ..++++++++ +||.+.++
T Consensus 102 -g~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~-l~~----~~~~d~~~~~~~~~~~~vi~~-~~G~~~~~ 169 (418)
T 3r9b_A 102 -PPDHTRLRGLVS-KAFAPRVIKRLEPEITALVDQLLD-AVD----GPEFNLIDNLAYPLPVAVICR-LLGVPIED 169 (418)
T ss_dssp -TTHHHHHHHHHH-GGGSHHHHGGGHHHHHHHHHHHHH-TCC----SSEEEHHHHTTTHHHHHHHHH-HHTCCGGG
T ss_pred -CchHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHh-hhc----cCCeehHHHHhCcCCHHHHHH-HcCCCHHH
Confidence 999999999998 999999999999999999999999 753 3588986555 6899999999 89987753
No 64
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A {Novosphingobium aromaticivorans} PDB: 3ofu_A*
Probab=99.66 E-value=2e-16 Score=116.90 Aligned_cols=136 Identities=9% Similarity=-0.036 Sum_probs=104.2
Q ss_pred cCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHH
Q 036759 20 LLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRK 98 (176)
Q Consensus 20 ~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 98 (176)
.+..+|+.++.+|+++ |||+++..++ +.+++++++.++ ++.+. ..|++++...........+.+++.. +|+.|++
T Consensus 21 ~~~~~p~~~~~~l~~~-Gpv~~~~~~~-~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~-~g~~h~~ 96 (396)
T 3oft_A 21 GVEQDYFAAWKTLLDG-PGLVWSTANG-GHWIAARGDVVRELWGDA-ERLSSQCLAVTPGLGKVMQFIPLQQ-DGAEHKA 96 (396)
T ss_dssp TTTTCHHHHHHGGGGS-CSEEEECSTT-SEEEECSHHHHHHHHHCT-TTEESTTCCSSTTHHHHHCCTTTTC-CHHHHHH
T ss_pred hhhcChHHHHHHHHhc-CCeeeecCCC-CEEEEcCHHHHHHHHcCc-ccccCCcccCCCccccccccCcccc-CCcHHHH
Confidence 3457999999999988 9999998864 588999999999 99554 5677765322111112223344445 4999999
Q ss_pred HHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 99 IRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 99 ~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+|++++ ++|++.+++.+.+.+.+.++++++.|.+. +.+|+...+ ..++.++++. +||.+.+
T Consensus 97 ~R~~~~-~~f~~~~l~~~~~~i~~~~~~l~~~l~~~----~~~d~~~~~~~~~~~~v~~~-~~G~~~~ 158 (396)
T 3oft_A 97 FRTPVM-KGLASRFVVALEPKVQAVARKLMESLRPR----GSCDFVSDFAEILPLNIFLT-LIDVPLE 158 (396)
T ss_dssp HHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHGGG----SEEEHHHHTTTTHHHHHHHH-HTTCCGG
T ss_pred HHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhhhc----CCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 999998 99999999999999999999999999763 468886665 5677777776 5787553
No 65
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta binding protein; HET: HEM; 2.47A {Micromonospora echinospora}
Probab=99.65 E-value=2.6e-16 Score=116.31 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=102.2
Q ss_pred CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhh------HHhhc-CcceEecCCCh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATK------YISYQ-QKNFAMAPYGS 94 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~g~ 94 (176)
.+|+.++.++ ++||||++ + +.+.|+++++++++ +|.+ ..|++++...... ..... +.++++.+ |+
T Consensus 13 ~~p~~~~~~l-~~yGpv~~-~--g~~~~vv~~~~~v~~vl~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 85 (397)
T 3buj_A 13 RDPYPSYHWL-LRHDPVHR-G--AHRVWYVSRFADVRAVLGD--ERFARTGIRRFWTDLVGPGLLAEIVGDIILFQD-EP 85 (397)
T ss_dssp HCCHHHHHHH-HHHCSEEE-C--GGGCEEECSHHHHHHHHTC--TTEESHHHHHHHHHHHCSSHHHHHHTTCGGGCC-TT
T ss_pred cCchHHHHHH-HhcCCeee-C--CCCeEEEcCHHHHHHHHcC--CCcccCcccccccccccccccccccccccccCC-ch
Confidence 5788999887 58999998 6 56899999999999 9964 3565543211110 11111 45666665 99
Q ss_pred hHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHH-HHHHHhhhhhhhhccccCCC
Q 036759 95 YWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAK-LSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 95 ~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~i~~~~fG~~~~~ 166 (176)
.|+.+|++++ ++|++.+++.+.+.+.+++.++++.|.+ ++++|+... ...+++++++.+ ||.+.++
T Consensus 86 ~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~----~~~~dl~~~~~~~~~~~vi~~~-~G~~~~~ 152 (397)
T 3buj_A 86 DHGRLRGVVG-PAFSPSALRRLEPVIAGTVDDLLRPALA----RGAMDVVDELAYPLALRAVLGL-LGLPAAD 152 (397)
T ss_dssp HHHHHHHHHG-GGSSTTTTGGGHHHHHHHHHHHHHHHHT----TTEEEHHHHTHHHHHHHHHHHH-HTCCGGG
T ss_pred hHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHhh----cCCeehHHHHHHHhHHHHHHHH-hCCCHHH
Confidence 9999999999 9999999999999999999999999975 247998755 578999999998 9987753
No 66
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450 vancomycin, oxidoreductase; HET: HEM; 1.70A {Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A* 1lgf_A*
Probab=99.65 E-value=1.9e-16 Score=117.15 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=96.4
Q ss_pred HHHHHHHhhCCeEEEecC-Ce---eEEEeccHHHHH-HHHhCCccccCCCc------hhhhhHH--hhcCcceEecCCCh
Q 036759 28 ALHKLAKIYGPIMHLRLG-LM---TTIVVSSPQAAE-FLKTHDLIFASRPP------LQATKYI--SYQQKNFAMAPYGS 94 (176)
Q Consensus 28 ~~~~~~~~yg~i~~~~~~-~~---~~v~i~~~~~i~-vl~~~~~~~~~~~~------~~~~~~~--~~~~~~~~~~~~g~ 94 (176)
.+.+|+++ |||+++.++ +. ++|+++++++++ +|.++ ..|++++. ....... ...+.++++.+ |+
T Consensus 18 ~~~~l~~~-Gpv~~~~~~~g~~~~~~vvv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 94 (398)
T 1lfk_A 18 PADELLAA-GALTRVTIGSGADAETHWMATAHAVVRQVMGDH-QQFSTRRRWDPRDEIGGKGIFRPRELVGNLMDYD-PP 94 (398)
T ss_dssp ECHHHHTS-CSEEEEC------CCCEEEECSHHHHHHHHHCT-TTEEECTTCCC-------------CCTTCGGGCC-TT
T ss_pred hhHHHHhc-CCccccccCCCCcccceEEEecHHHHHHHHhhC-cccccccccccccccCCcccccccccccCccccC-CH
Confidence 44557666 999999875 45 799999999999 99433 24665543 1111111 11234666655 99
Q ss_pred hHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH-HHhhhhhhhhccccCC
Q 036759 95 YWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSA-VSANMTCRMVLGKKRS 165 (176)
Q Consensus 95 ~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~i~~~~fG~~~~ 165 (176)
.|+.+|++++ ++|++.+++.+.+.+.+++.++++.|.+ .++++|+.+++.. +++++++. +||.+++
T Consensus 95 ~~~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~l~~~l~~---~~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 161 (398)
T 1lfk_A 95 EHTRLRRKLT-PGFTLRKMQRMAPYIEQIVNDRLDEMER---AGSPADLIAFVADKVPGAVLCE-LVGVPRD 161 (398)
T ss_dssp HHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHHHHH---HCSSEEHHHHTTTTHHHHHHHH-HHTCCGG
T ss_pred HHHHHHHHHH-hhhCHHHHHHHHHHHHHHHHHHHHHHHh---cCCCccHHHHHHHHHHHHHHHH-HcCCCHH
Confidence 9999999999 9999999999999999999999999975 3467999999887 99999998 5898765
No 67
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.50A {Sulfolobus solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A* 1io9_A* 1io8_A*
Probab=99.64 E-value=4.3e-16 Score=114.11 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=100.3
Q ss_pred chHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCc--hhhhh-----H--Hhh-cCcceEecCCC
Q 036759 25 PPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPP--LQATK-----Y--ISY-QQKNFAMAPYG 93 (176)
Q Consensus 25 ~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~--~~~~~-----~--~~~-~~~~~~~~~~g 93 (176)
|+..+.++ ++||||+++ + +.|++++++.++ +|.+. ..|++++. ...+. . ... .+.++++.+ |
T Consensus 1 p~~~~~~l-r~~Gpv~~~--g--~~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-g 73 (368)
T 1io7_A 1 MYDWFSEM-RKKDPVYYD--G--NIWQVFSYRYTKEVLNNF-SKFSSDLTGYHERLEDLRNGKIRFDIPTRYTMLTSD-P 73 (368)
T ss_dssp CHHHHHHH-HHHCSEEEC--S--SCEEECSHHHHHHHHHCT-TTEECCCSSHHHHHHHHTTTCCCCSCGGGSSGGGCC-T
T ss_pred CCHHHHHH-HhcCCeEeE--C--CEEEEecHHHHHHHHcCc-ccccccccccccccccccccccccccccccccccCC-C
Confidence 46778888 589999987 3 489999999999 99764 46777764 10111 1 111 114565555 9
Q ss_pred hhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCCC
Q 036759 94 SYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 94 ~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~~ 166 (176)
+.|+++|++++ ++|++.+++.+.+.+.+.++++++.| + .+ ++|+..++ ..+++++|+++ ||.+.++
T Consensus 74 ~~h~~~R~~~~-~~f~~~~~~~~~~~i~~~~~~l~~~l-~---~g-~~d~~~~~~~~~~~~vi~~~-~G~~~~~ 140 (368)
T 1io7_A 74 PLHDELRSMSA-DIFSPQKLQTLETFIRETTRSLLDSI-D---PR-EDDIVKKLAVPLPIIVISKI-LGLPIED 140 (368)
T ss_dssp THHHHHHGGGT-TTTCHHHHHHHHHHHHHHHHHHHHTC-C---TT-SEEHHHHTTTHHHHHHHHHH-HTCCGGG
T ss_pred hHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHHHHh-h---cC-CccHHHHHHHHHHHHHHHHH-hCCCHHH
Confidence 99999999999 99999999999999999999999998 4 33 69999876 78999999999 9987653
No 68
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450 fold, structural genomics, PSI, protein structure initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis} SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A* 3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Probab=99.63 E-value=9.5e-17 Score=118.66 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=103.2
Q ss_pred CCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCcccc-C-CCch--hhhh--HH-hhcCcceEecC
Q 036759 21 LGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFA-S-RPPL--QATK--YI-SYQQKNFAMAP 91 (176)
Q Consensus 21 ~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~-~-~~~~--~~~~--~~-~~~~~~~~~~~ 91 (176)
+..+|+..+.+| ++||||+++++ ++.+.|+++++++++ +|.++ .|. + ++.. .... .+ ...+.++++.
T Consensus 14 ~~~~p~~~~~~l-~~yGpv~~~~~~g~~~~vvv~~~~~v~~vl~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 89 (396)
T 1n40_A 14 RGDRIPDAVAEL-RTREPIRKVRTITGAEAWLVSSYALCTQVLEDR--RFSMKETAAAGAPRLNALTVPPEVVNNMGNI- 89 (396)
T ss_dssp CSSSCCHHHHHH-HHHCSEEEEECTTSCEEEEECSHHHHHHHHTCT--TEESGGGGSTTCCCSSCCSSCGGGGGHHHHH-
T ss_pred cccCccHHHHHH-HHhCCeeEeecCCCceEEEEecHHHHHHHHhCC--CcccccCccccccccccccCCchhhhhhhhH-
Confidence 457899999999 99999999997 788999999999999 99654 355 4 3321 1110 00 1012345443
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
.|+.+|++++ ++|++. ++.+.+.+.+++.++++.|.+. ++++|+..++ ..+++++++. +||.+++
T Consensus 90 ---~h~~~R~~~~-~~fs~~-~~~~~~~i~~~~~~l~~~l~~~---~~~~d~~~~~~~~~~~~vi~~-~~G~~~~ 155 (396)
T 1n40_A 90 ---ADAGLRKAVM-KAITPK-APGLEQFLRDTANSLLDNLITE---GAPADLRNDFADPLATALHCK-VLGIPQE 155 (396)
T ss_dssp ---HHTTCHHHHH-HHTSSC-STTHHHHHHHHHHHHHHHHHHH---CSCEETTTTTHHHHHHHHHHH-HHTCCGG
T ss_pred ---HHHHHHHHHH-HhhChH-HHHhHHHHHHHHHHHHHHHHhc---CCCccHHHHHHHHhHHHHHHH-HhCCChh
Confidence 9999999999 999999 9999999999999999999862 4679998665 5899999999 8998775
No 69
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase, oxidoreductase; HET: HEM; 2.00A {Sphingopyxis macrogoltabida}
Probab=99.62 E-value=1.8e-15 Score=112.82 Aligned_cols=134 Identities=11% Similarity=0.068 Sum_probs=101.8
Q ss_pred CCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhCCccccCCCc---hhhhh-----H-HhhcCcceEecC
Q 036759 23 KFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTHDLIFASRPP---LQATK-----Y-ISYQQKNFAMAP 91 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~---~~~~~-----~-~~~~~~~~~~~~ 91 (176)
.+|+.++.+++++ |||+++.. ++.+.|+|++++.++ ++.+. ..|++++. ..... . ....+.+++..
T Consensus 38 ~~p~~~~~~lr~~-gpv~~~~~~~~~~~~vvt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 114 (426)
T 3rwl_A 38 DSVGEYFKRLRKD-DPVHYCADSAFGPYWSITKYNDIMHVDTNH-DIFSSDAGYGGIIIDDGIQKGGDGGLDLPNFIAM- 114 (426)
T ss_dssp TCHHHHHHHHHHH-CSEEEESCCTTCSEEEECSHHHHHHHHHCT-TTEECCGGGTCSSSSCCC-------CCCCCGGGC-
T ss_pred CCccHHHHHHHhc-CCeeeccCCCCCCEEEEcCHHHHHHHHcCC-cccccccccCCCCcccccccccccccccCccccc-
Confidence 5799999999876 99999987 456799999999999 99664 34555431 11111 0 11122344445
Q ss_pred CChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 92 YGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 92 ~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+|+.|+++|++++ ++|++.+++.+.+.+.+.+.++++.|. .++++|+...+ ..+++++++. +||.+.+
T Consensus 115 dg~~h~~~R~~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~----~~~~~dl~~~~~~~~~~~vi~~-l~G~~~~ 183 (426)
T 3rwl_A 115 DRPRHDEQRKAVS-PIVAPANLAALEGTIRERVSKTLDGLP----VGEEFDWVDRVSIEITTQMLAT-LFDFPFE 183 (426)
T ss_dssp CTTHHHHHHHHHG-GGGCHHHHHHHHHHHHHHHHHHHHTSC----SSSCEEHHHHTHHHHHHHHHHH-HHTCCGG
T ss_pred CchHHHHHHHHhh-hhhCHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchHHHHHHHHHHHHHHH-HcCCCHH
Confidence 4999999999998 999999999999999999999999883 35689987776 6788988886 8997654
No 70
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein, oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB: 3nc5_A* 3nc6_A* 3nc7_A*
Probab=99.61 E-value=8.9e-17 Score=120.37 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=93.3
Q ss_pred CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHHh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK 101 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~ 101 (176)
.+|+.++.++ ++||||+++..++ .|++++++.++ ||.+.. .|++++......... .+.+++..+ |+.|+++|+
T Consensus 53 ~~p~~~~~~l-r~~gpv~~~~~~~--~~vv~~~~~v~~vl~~~~-~f~~~~~~~~~~~~~-~~~~l~~~d-g~~h~~~Rr 126 (441)
T 3nc3_A 53 NNPYAYFSQL-REEDPVHYEESID--SYFISRYHDVRYILQHPD-IFTTKSLVERAEPVM-RGPVLAQMH-GKEHSAKRR 126 (441)
T ss_dssp HCGGGTHHHH-HHHCSEEEETTTT--EEEECCHHHHHHHHHCTT-TEECCCTTSCCCCSC-C--------------CCHH
T ss_pred cChHHHHHHH-HhcCCEEEeCCCC--EEEEcCHHHHHHHhcCcc-ccccccccccccccc-CCCccccCC-cHHHHHHHH
Confidence 5788888887 5899999987765 89999999999 997654 477665432221111 112455555 999999999
Q ss_pred hhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHhhhhhhhhccccCCC
Q 036759 102 LCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDIS-AKLSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 102 ~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~i~~~~fG~~~~~ 166 (176)
+++ ++|++.+++.+.+.+.+.++++++.|.+ ++.+|+. +....+++++++. +||.+.++
T Consensus 127 ~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l~~----~~~~dl~~~~~~~~~~~vi~~-l~G~~~~~ 186 (441)
T 3nc3_A 127 IVV-RSFIGDALDHLSPLIKQNAENLLAPYLE----RGKSDLVNDFGKTFAVCVTMD-MLGLDKRD 186 (441)
T ss_dssp HHH-HHHHHTHHHHHHHHHHHHHHHHHTTTTT----TTEEECCCCCHHHHHHHHHHH-HTTCCGGG
T ss_pred HHH-hhcCHHHHHHHHHHHHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHH-HcCCCHHH
Confidence 998 9999999999999999999999998864 3568875 4456699999999 58987643
No 71
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus} PDB: 2rfc_A*
Probab=99.56 E-value=2.3e-15 Score=109.22 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=90.4
Q ss_pred HhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHHhhhhhhcCChHH
Q 036759 34 KIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAK 112 (176)
Q Consensus 34 ~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~ 112 (176)
++||||+++ | .|+++++++++ +|.++ ..|++++....... .+.++++.+ |+.|+.+|++++ ++|++.+
T Consensus 2 r~~gpv~~~---g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~---~~~~l~~~~-g~~~~~~R~~~~-~~fs~~~ 70 (343)
T 2rfb_A 2 RLNDPVHYD---G--AWHVYKYSDVKHVLMND-KIFSSNPGNRYSNA---GGISFITMD-NPEHKEFRDISA-PYFLPSK 70 (343)
T ss_dssp -CCCCEEET---T--EEEECSHHHHHHHHHCT-TTEESSCSSCCC------CCGGGGCC-HHHHHHHHHHHH-HHHSHHH
T ss_pred CCcCCeeee---C--eEEEcCHHHHHHHHhCh-hhcccCCcCCCCCc---cccccccCC-chHHHHHHHHhh-hhcCHHH
Confidence 579999986 3 89999999999 99765 46777652111111 245666655 999999999998 9999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 113 INYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 113 l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
++.+.+.+.++++++++.|. ++|+..++ ..+++++++++ ||.+.+
T Consensus 71 l~~~~~~i~~~~~~l~~~l~-------~~d~~~~~~~~~~~~vi~~~-~G~~~~ 116 (343)
T 2rfb_A 71 INDYKDFIEETSNDLIKNID-------NKDIISEYAVRLPVNIISKI-LGIPDS 116 (343)
T ss_dssp HGGGHHHHHHHHHHHHTTCT-------TSCHHHHTTTHHHHHHHHHH-HTCCGG
T ss_pred HHHHHHHHHHHHHHHHHhcc-------ccCHHHHHhhhhhHHHHHHH-cCCCHH
Confidence 99999999999999998775 68998865 89999999998 998764
No 72
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX, bioremediation, electron transport; HET: HEM; 1.49A {Rhodococcus} PDB: 2wiv_A*
Probab=99.56 E-value=6e-15 Score=108.98 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHHh
Q 036759 23 KFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIRK 101 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~ 101 (176)
.+|+.++.++++ +|||+++..+ .|++++++.++ ++.+ ..|+.++...........+.+++.. +|+.|+++|+
T Consensus 20 ~dp~~~~~~lr~-~~pv~~~~~g---~~~v~~~~~v~~~l~d--~~fs~~~~~~~~~~~~~~~~~l~~~-dg~~h~~~R~ 92 (394)
T 2wiy_A 20 NNPYPWYRRLQQ-DHPVHKLEDG---TYLVSRYADVSHFAKL--PIMSVEPGWADAGPWAVASDTALGS-DPPHHTVLRR 92 (394)
T ss_dssp HCCHHHHHHHHH-HCSEEECTTS---CEEECCHHHHHHHTTS--TTEECHHHHHTCGGGGGGGGSGGGC-CTTHHHHHHH
T ss_pred cCccHHHHHHHh-cCCeEEecCC---eEEEcCHHHHHHHHcC--CCccccccccccccchhcccccccC-CchHHHHHHH
Confidence 589999999966 4899987643 79999999999 9954 2454432111111111112445445 5999999999
Q ss_pred hhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhccccCCC
Q 036759 102 LCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVLGKKRSD 166 (176)
Q Consensus 102 ~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~fG~~~~~ 166 (176)
+++ ++|++..++.+.+.+.+.+.++++.|.. ++++|+...+..+++++++..+||.+.++
T Consensus 93 ~~~-~~fs~~~~~~~~~~i~~~~~~l~~~~~~----~~~~d~~~~~~~~~~~vi~~~~~G~~~~~ 152 (394)
T 2wiy_A 93 QTN-KWFTPKLVDGWVRTTRELVGDLLDGVEA----GQVIEARRDLAVVPTHVTMARVLQLPEDD 152 (394)
T ss_dssp HHH-TTCSHHHHHHHTHHHHHHHHHHHHTCCT----TCCEEHHHHHTHHHHHHHHHHHHTCCCCC
T ss_pred HHH-hccCHHHHHHHHHHHHHHHHHHHHHHhc----cCCeeHHHHHHhhhHHHHHHHHcCCCHhH
Confidence 998 9999999999999999999999988753 46799999999999999999999987643
No 73
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron, metal-binding, monooxygenase, oxidoreductase; HET: HEM; 1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Probab=99.54 E-value=9.2e-15 Score=107.03 Aligned_cols=122 Identities=10% Similarity=0.087 Sum_probs=94.5
Q ss_pred chHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCc-hh-hh-----h-HHhhc--CcceEecCCC
Q 036759 25 PPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPP-LQ-AT-----K-YISYQ--QKNFAMAPYG 93 (176)
Q Consensus 25 ~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~-~~-~~-----~-~~~~~--~~~~~~~~~g 93 (176)
|+..+.+++ +||||+++. | .|++++++.++ +|.+. ..|++++. .. .. . .+... +.++++.+ |
T Consensus 1 p~~~~~~lr-~~gpv~~~~--g--~~vv~~~~~v~~vl~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 73 (367)
T 3b4x_A 1 MYDWFKQMR-KESPVYYDG--K--VWNLFKYEDCKMVLNDH-KRFSSNLTGYNDKLEMLRSGKVFFDIPTRYTMLTSD-P 73 (367)
T ss_dssp CHHHHHHHH-HHCSEEECS--S--SEEECSHHHHHHHHHCT-TTEECCCSSTTTTHHHHHHTCCCCCCGGGSSGGGCC-T
T ss_pred CCHHHHHHH-HcCCceeeC--C--EEEEecHHHHHHHHcCc-hhhccCcccccccccccccccchhhcccccccccCC-c
Confidence 466788884 799999987 3 89999999999 99765 46776642 11 11 1 11110 15666665 9
Q ss_pred hhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhcccc
Q 036759 94 SYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKK 163 (176)
Q Consensus 94 ~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~ 163 (176)
+.|+++|++++ ++|++.+++. +.+.+.++++++.|. | .+|+...+ ..+++++|+. +||.+
T Consensus 74 ~~h~~~R~~~~-~~fs~~~l~~--~~i~~~~~~l~~~l~-----g-~~d~~~~~~~~~~~~vi~~-~~G~~ 134 (367)
T 3b4x_A 74 PLHDELRNLTA-DAFNPSNLPV--DFVREVTVKLLSELD-----E-EFDVIESFAIPLPILVISK-MLGIN 134 (367)
T ss_dssp THHHHHHHTTG-GGGSGGGSCH--HHHHHHHHHHHHTCC-----S-EEEHHHHTTTHHHHHHHHH-HHTCC
T ss_pred hhHHHHHHHHH-HhcCHhhhcc--hHHHHHHHHHHHhcc-----C-CcchHHHHHHhhHHHHHHH-HcCCC
Confidence 99999999999 9999999988 999999999998875 3 49998765 7999999999 79988
No 74
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A {Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A* 4dnz_A*
Probab=99.50 E-value=4.6e-14 Score=104.85 Aligned_cols=144 Identities=15% Similarity=0.099 Sum_probs=101.0
Q ss_pred CCCceecc---cccCCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhh---hHHhh
Q 036759 10 KGFPIVGC---LHLLGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQAT---KYISY 82 (176)
Q Consensus 10 ~~~p~~G~---~~~~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~---~~~~~ 82 (176)
.++|.+|- ...+..||+.++.++++ +|||+++. +...|+|++++.|+ ||.+. ..|++....... .....
T Consensus 18 ~~~P~~~~dp~~~~~~~dP~~~~~~lR~-~gPV~~~~--~~~~~~vt~~~~v~~vl~d~-~~fs~~~~~~~~~~~~~~~~ 93 (412)
T 4dnj_A 18 AGVPHLGIDPFALDYFADPYPEQETLRE-AGPVVYLD--KWNVYGVARYAEVYAVLNDP-LTFCSSRGVGLSDFKKEKPW 93 (412)
T ss_dssp TTSCEECCCTTSHHHHHSCHHHHHHHHH-HCSSEEET--TTTEEEECSHHHHHHHHTCT-TTEESTTCSSSSCTTTSCCS
T ss_pred CCCCccCCCCCCHHHHhCcHHHHHHHHh-cCCEEEEC--CCCEEEECCHHHHHHHHcCC-ccccCCCccccccccccccc
Confidence 35777662 12233689999999965 69998764 34589999999999 99643 344433221111 11111
Q ss_pred cCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccH-HHHHHHHHhhhhhhhhcc
Q 036759 83 QQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDI-SAKLSAVSANMTCRMVLG 161 (176)
Q Consensus 83 ~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~i~~~~fG 161 (176)
...+.++..||+.|+++|++++ ++|++++++.+.+.+.+.++++++.+.+ .++.+|+ .+....+++++++.++..
T Consensus 94 ~~~~~~~~~Dg~~H~r~R~~~~-~~Fs~~~l~~~~~~i~~~~~~l~~~~~~---~~~~~D~v~~~~~~~~~~~i~~l~g~ 169 (412)
T 4dnj_A 94 RPPSLILEADPPAHTRTRAVLS-KVLSPATMKRLRDGFAAAADAKIDELLA---RGGNIDAIADLAEAYPLSVFPDAMGL 169 (412)
T ss_dssp SCCCTTTTCCTTHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHHHHH---TTSEEETCCCCCCHHHHHHHHHHHTC
T ss_pred cCCCccccCChHHHHHHHhhcc-cccCHHHHHHhhHHHHHHHHHHHHhhhc---cCCCceeHHHHHhhhhHhHHHHHcCC
Confidence 1123334445999999999998 9999999999999999999999999877 3456775 456677888888876543
No 75
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A {Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Probab=99.49 E-value=9.9e-15 Score=108.53 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=95.7
Q ss_pred CCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCch-hhh------hHHhhcCcceEecCCC
Q 036759 22 GKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPL-QAT------KYISYQQKNFAMAPYG 93 (176)
Q Consensus 22 ~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~g 93 (176)
..+|+.+ ..+ ++||||+++.+++.. |++++++.++ ||.+.. +...... ... ......+.+++..+ |
T Consensus 32 ~~~P~~~-~~l-r~~gpv~~~~~g~~~-~vv~~~~~v~~vL~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d-g 105 (416)
T 3p3o_A 32 PNFSWDS-PEV-AEAREKSWIARTPLA-LLVLRYAEADQLARDKR--LISGFRGLVDMVGTPEGPVRDFMVDFLQSLD-G 105 (416)
T ss_dssp TTCCTTS-HHH-HHHHHHCSEEECSSS-EEECSHHHHHHHHHCTT--EECSHHHHHHHHTCCSSHHHHHHHHSGGGCC-H
T ss_pred ccCCchH-HHH-HHhCCccccccCCCc-eEEeCHHHHHHHHcCcc--cccCCccccccccccccchhhhhcCccccCC-c
Confidence 3678888 555 579999988875545 9999999999 997653 3322110 000 00011123455554 9
Q ss_pred hhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccCC
Q 036759 94 SYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKRS 165 (176)
Q Consensus 94 ~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~~ 165 (176)
+.|+++|++++ ++|++.+++.+.+.+.+.+..+++.| . . +.+|+...+ ..+++++|+. +||.+.+
T Consensus 106 ~~h~~~Rr~~~-~~fs~~~l~~~~~~i~~~~~~ll~~l-~---~-g~~d~~~~~~~~~~~~vi~~-l~G~~~~ 171 (416)
T 3p3o_A 106 ADHRRLRGLAT-HPFTPRRITAVQPFVRSTVEQLIDKL-P---Q-GDFDFVQHFPHPLPALVMCQ-LLGFPLE 171 (416)
T ss_dssp HHHHHHHHTTC-GGGSHHHHHHHHHHHHHHHHHHHHTC-C---S-SSEEHHHHTTTHHHHHHHHH-HHTCCGG
T ss_pred hHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHhh-c---c-CCccHHHHHHHHHHHHHHHH-HhCCCHH
Confidence 99999999998 99999999999999999999999998 3 3 358976555 5699999998 5887654
No 76
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=99.29 E-value=8.2e-12 Score=92.90 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=93.8
Q ss_pred CCchHHHHHHHHhhC-CeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchhhhhHHhhcCcceEecCCChhHHHHH
Q 036759 23 KFPPRALHKLAKIYG-PIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQATKYISYQQKNFAMAPYGSYWRKIR 100 (176)
Q Consensus 23 ~~~~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~R 100 (176)
.+++..+.++++..+ +++....++ ..|+|++++.|+ ||.+. ..|++........ .......++...|++.|+++|
T Consensus 37 ~~~~~~~~~lr~~~~~~~~~~~~~g-g~W~vtr~~dv~~vl~d~-~~fs~~~~~~~~~-~~~~~~~~~~~~D~p~H~r~R 113 (417)
T 4dxy_A 37 DGYHEAWKKVQHPGIPDLIWTPFTG-GHWIATNGDTVKEVYSDP-TRFSSEVIFLPKE-AGEKAQMVPTKMDPPEHTPYR 113 (417)
T ss_dssp GCHHHHHHHHSCTTCCSEEEESSTT-SEEEECSHHHHHHHHTCT-TTEESSCCSSSTT-SSCSSCTTTTTCCTTTHHHHH
T ss_pred cChHHHHHHHHhhCCCCEEecCCCC-CEEEECCHHHHHHHHcCc-hhccCCCcccccc-cccccccCcccCCcHHHHHHH
Confidence 578889999976643 466554443 589999999999 99543 4566544321111 111122333444699999999
Q ss_pred hhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHHHhhhhhhhhccccC
Q 036759 101 KLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAVSANMTCRMVLGKKR 164 (176)
Q Consensus 101 ~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~~fG~~~ 164 (176)
++++ ++|++++++.+.+.|.+.++++++.+.+. +.+|+...+ ..+++.+++.+ +|...
T Consensus 114 rll~-~~Fs~~~l~~~~~~i~~~~~~lld~l~~~----g~~D~v~~~a~~l~~~vi~~l-lg~~~ 172 (417)
T 4dxy_A 114 KALD-KGLNLAKIRKVEDKVREVASSLIDSFAAR----GECDFAAEYAELFPVHVFMAL-ADLPL 172 (417)
T ss_dssp HHHH-HHHCHHHHHTTHHHHHHHHHHHHHHHHTT----SEEEHHHHTTTTHHHHHHHHH-TTCCG
T ss_pred HHhh-hhcCHHHHHHHHHHHHHHHHHHHHHhhhc----CCeeeHHHHHhhhHHHHHHHH-cCCCH
Confidence 9999 99999999999999999999999998763 568876555 55677777654 56554
No 77
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=98.83 E-value=8.4e-12 Score=91.62 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=86.1
Q ss_pred CCCC-CCCCceeccccc-----CCCCchHHHHHHHHhhCCeEEEecCCeeEEEeccHHHHH-HHHhCCccccCCCchh--
Q 036759 5 LPPG-PKGFPIVGCLHL-----LGKFPPRALHKLAKIYGPIMHLRLGLMTTIVVSSPQAAE-FLKTHDLIFASRPPLQ-- 75 (176)
Q Consensus 5 ~ppg-p~~~p~~G~~~~-----~~~~~~~~~~~~~~~yg~i~~~~~~~~~~v~i~~~~~i~-vl~~~~~~~~~~~~~~-- 75 (176)
+||| ++++|++|+... +..+|+.++.+++++ ||++.. ...|++++++.++ ||.+ ..|++++...
T Consensus 35 ~ppG~~~~~P~~G~~~~~~~~~~~~dp~~~~~~lr~~--pV~~~~---~~~~vv~~~~~v~~vl~d--~~f~~~~~~~~~ 107 (381)
T 2yjn_B 35 MIRGLHWGYGSNGDPYPMLLCGHDDDPQRRYRSMRES--GVRRSR---TETWVVADHATARQVLDD--PAFTRATGRTPE 107 (381)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTCCSCCHHHHHHHHHH--CEEECS---SSCEEECSHHHHHHHHHC--SSEESSCCCCCH
T ss_pred CCCcccccccccCCchhhcCchhccCchHHHHHHHhC--CceeCC---CCEEEEcCHHHHHHHHcC--CCcCCCcccccc
Confidence 4566 446799997533 456899999999865 999765 3589999999999 9975 3566553210
Q ss_pred hhh----HHhhcCcceEecCCChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHH-HHH
Q 036759 76 ATK----YISYQQKNFAMAPYGSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKL-SAV 150 (176)
Q Consensus 76 ~~~----~~~~~~~~~~~~~~g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~ 150 (176)
... .....+.+++..+ |+.| + ++|+ . .+.|.+.++++++.|. +.+|+..++ ..+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~d-g~~H-------~-~~Ft-----~-~~~i~~~~~~ll~~~~------g~~Dl~~~~a~~l 166 (381)
T 2yjn_B 108 WMRAAGAPPAEWAQPFRDVH-AASW-------E-GEVP-----D-VGELAESFAGLLPGAG------ARLDLVGDFAWQV 166 (381)
T ss_dssp HHHHHTCCHHHHTHHHHHHH-HCCC-------C-SCCC-----C-CSCHHHHTSTTSCC------------CCCCCCTHH
T ss_pred cccccccccchhhhhhhhCC-chhh-------h-hccC-----C-hHHHHHHHHHHHHhcc------CcchHHHHHHHHH
Confidence 100 0111124565665 8999 5 8888 3 7889999999988875 268888665 699
Q ss_pred HhhhhhhhhccccCCC
Q 036759 151 SANMTCRMVLGKKRSD 166 (176)
Q Consensus 151 ~~~~i~~~~fG~~~~~ 166 (176)
++++|+++ ||.+.++
T Consensus 167 ~~~vi~~l-~G~~~~~ 181 (381)
T 2yjn_B 167 PVQGMTAV-LGAAGVL 181 (381)
T ss_dssp HHHHHHTC------CC
T ss_pred HHHHHHHH-cCCCHHH
Confidence 99999995 9988754
No 78
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.06 E-value=5.4 Score=22.97 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++...||+|..+.+. |--+|...+++.++ ++..
T Consensus 15 fV~~Lp~--~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 15 YIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp EEECCCT--TCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred EEECCCC--CCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 4677653 23456788888999998776652 23566778999999 8853
No 79
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=79.12 E-value=7.3 Score=22.62 Aligned_cols=57 Identities=23% Similarity=0.340 Sum_probs=38.6
Q ss_pred CCCCCCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecC------CeeEEEeccHHHHH-HHH
Q 036759 4 ILPPGPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 4 ~~ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~------~~~~v~i~~~~~i~-vl~ 62 (176)
+.||.|...=++||+.. .-....+.++...||+|..+.+. |.-+|-..+++.+. ++.
T Consensus 2 r~~~~~~~~l~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPY--KITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp -CCTTCCSEEEEESCCT--TCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHH
Confidence 35566655557888764 23455678888999998777651 23567778888888 775
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=77.22 E-value=6.1 Score=20.75 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=31.7
Q ss_pred ecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhC
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~ 64 (176)
+|++.. .-....+.++..+||+|..+.+. |--+|-..+++.++ ++..+
T Consensus 4 v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~ 61 (75)
T 1iqt_A 4 VGGLSP--DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61 (75)
T ss_dssp ESCCCS--SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTS
T ss_pred EeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhC
Confidence 455543 23445678888999998776652 22456667888888 88543
No 81
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=74.66 E-value=8.8 Score=21.26 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=34.3
Q ss_pred CCCceecccccCCCCchHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HH
Q 036759 10 KGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FL 61 (176)
Q Consensus 10 ~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl 61 (176)
...=++|++.. .--...+.++..+||+|..+.+. |--+|-..+++.++ +.
T Consensus 11 ~~~l~V~~Lp~--~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 11 GSKVFVGRCTE--DMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp CCEEEEESCCT--TCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT
T ss_pred CCEEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc
Confidence 33345788754 33456788889999999887764 34566777888777 53
No 82
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=72.01 E-value=9.4 Score=20.47 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=33.8
Q ss_pred eecccccCCCC----chHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKF----PPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~----~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++..-..+ ....+.++..+||+|..+.+. |--+|-..+++.++ ++..
T Consensus 5 ~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~ 66 (81)
T 2krb_A 5 VVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 66 (81)
T ss_dssp EEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH
Confidence 46776542222 346788889999998877654 23466677888888 8753
No 83
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.88 E-value=13 Score=21.43 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=39.0
Q ss_pred eecccccCCCCc---hHHHHHHHHhhC-CeEEEecCCeeEEEeccHHHHH-HHHh-CCccccCCC
Q 036759 14 IVGCLHLLGKFP---PRALHKLAKIYG-PIMHLRLGLMTTIVVSSPQAAE-FLKT-HDLIFASRP 72 (176)
Q Consensus 14 ~~G~~~~~~~~~---~~~~~~~~~~yg-~i~~~~~~~~~~v~i~~~~~i~-vl~~-~~~~~~~~~ 72 (176)
+++||..- .+. ...+.+++.+|| +|..+ .+|.-+|...+.+.++ .+.. +...+..++
T Consensus 13 YV~NL~~~-~~~~~lk~~L~~lF~~yGG~Vl~V-tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 13 YVYNLPAN-KDGKSVSNRLRRLSDNCGGKVLSI-TGCSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp EEESCCTT-SCHHHHHHHHHHHHHTTTCCEEEC-CTTCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEeCCCCc-CCHHHHHHHHHHHHHHcCCeeEEE-ecCEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 48887642 222 234778999995 99877 4588899999999998 8754 444444443
No 84
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=69.13 E-value=15 Score=21.46 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=34.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~~~~i~-vl~~ 63 (176)
++|||.. .-..+.+.+++.+||+|..+.+. +--+|...+++.++ ++..
T Consensus 20 ~V~nLp~--~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 20 VVSGLPP--SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp EEEECCS--SCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 4788764 23345677888999998877763 44677778888888 7753
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=68.26 E-value=11 Score=19.72 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.0
Q ss_pred ecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
+|++.. .-....+.++..+||+|..+.+. |--+|-..+++.++ ++.-
T Consensus 4 v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 60 (75)
T 2mss_A 4 VGGLSV--NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60 (75)
T ss_dssp EECCCS--SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSS
T ss_pred EecCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHC
Confidence 556543 23455678888999998776652 12456667888888 8853
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=64.85 E-value=15 Score=19.91 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=33.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-----C----eeEEEeccHHHHH-HHHhC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----L----MTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~~ 64 (176)
++|++.. .-....+.++..+||+|..+.+. + --+|-..+++.++ ++..+
T Consensus 15 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 73 (87)
T 3s7r_A 15 FVGGLSW--DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQK 73 (87)
T ss_dssp EEECCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSS
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhC
Confidence 5788754 23456788888999998766542 1 2355667888888 87543
No 87
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=61.57 E-value=21 Score=20.69 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=33.4
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|+|.. .--...+.++..+||+|..+.+. |--+|-..+++.++ ++..
T Consensus 9 fV~nLp~--~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 9 FIKNLDK--SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCC--CCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 5788754 23456788899999998766542 12366778999988 8754
No 88
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.56 E-value=19 Score=19.77 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=33.3
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC------C---eeEEEeccHHHHH-HHHh
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG------L---MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~------~---~~~v~i~~~~~i~-vl~~ 63 (176)
.=+++++.. .-....+.++..+||+|..+.+. . .-+|-..+++.++ ++..
T Consensus 17 ~l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 17 CLGVFGLSL--YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CEEEESCCS--SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 345787754 23456788888999998766652 1 2355667888888 7753
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.84 E-value=23 Score=20.20 Aligned_cols=48 Identities=8% Similarity=-0.027 Sum_probs=35.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--~~~~v~i~~~~~i~-vl~~ 63 (176)
++|+|.. .-..+.+.+++.+||+|..+.+. +.-+|...+.+.++ ++..
T Consensus 19 ~V~nLp~--~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 19 VVSGLPP--SGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp EEESCCS--SCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHH
Confidence 4788763 34466788899999998777653 45677778888888 8754
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=58.21 E-value=23 Score=20.07 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=35.5
Q ss_pred ceecccccCCCC----chHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKF----PPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~----~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++..-..+ ....+.++..+||+|..+.+. |--+|-..+++.++ ++..
T Consensus 18 l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 18 IVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp EEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred EEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 357887753222 346788899999999877764 33466677888888 7754
No 91
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=57.03 E-value=24 Score=19.84 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 19 ~v~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 19 FVGMLNK--QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp EEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 5777754 23456788888999998776653 22355667888888 7753
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=55.28 E-value=29 Score=20.25 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=30.9
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FL 61 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl 61 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|...+.+.++ ++
T Consensus 40 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 95 (124)
T 2jwn_A 40 YVGNVDY--GSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV 95 (124)
T ss_dssp EEEEECT--TCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Confidence 4666643 23356788888999998766542 12356667888888 77
No 93
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=55.21 E-value=26 Score=19.72 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=31.9
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-----C----eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----L----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~ 63 (176)
++||+.. .-....+.++..+||+|..+.+. + --+|-..+++.++ ++..
T Consensus 23 fV~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 23 IVNYLPQ--NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 4677653 23356788888999998766542 1 1356667888888 7753
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=54.86 E-value=28 Score=20.02 Aligned_cols=55 Identities=11% Similarity=0.122 Sum_probs=36.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh-CCccccC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT-HDLIFAS 70 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~-~~~~~~~ 70 (176)
++||+.. .-....+.+++.+||+|..+.+. +.-+|...+++.++ ++.. +...+..
T Consensus 14 ~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 14 LAKNLPA--GTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4666643 33456788899999999877763 23566778888888 7753 3333433
No 95
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=54.30 E-value=30 Score=20.15 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=34.3
Q ss_pred eecccccCCCCchHHHHHHHHhhC-CeEEEecC-----CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYG-PIMHLRLG-----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~-----~~~~v~i~~~~~i~-vl~~ 63 (176)
++||+.. .-..+.+.++..+|| .|..+.+. |--+|-..+.+.++ ++..
T Consensus 32 ~VgnLp~--~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 32 TMKNLPE--GCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp EEECSSC--CCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 4788753 345667889999999 77666653 34577778899888 8754
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=53.82 E-value=20 Score=20.62 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=31.0
Q ss_pred eecccccCCCCchHHHH---HHHHhhCCeEEEecC------------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALH---KLAKIYGPIMHLRLG------------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~---~~~~~yg~i~~~~~~------------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++..- -....+. ++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 19 ~V~nLp~~--~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 19 FVVGLSQR--LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp EEEEECTT--TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred EEECCCCC--CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 57776542 2234455 788899998766542 23456667888888 7754
No 97
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=53.43 E-value=15 Score=21.25 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.3
Q ss_pred hHHHHHHHHhhCCeEEEecCCe-eEEEeccHHHHH-HHH
Q 036759 26 PRALHKLAKIYGPIMHLRLGLM-TTIVVSSPQAAE-FLK 62 (176)
Q Consensus 26 ~~~~~~~~~~yg~i~~~~~~~~-~~v~i~~~~~i~-vl~ 62 (176)
..-+.++++.||.|.--|+-.+ -.+++.+++.++ ++.
T Consensus 29 t~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHH
T ss_pred hHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHH
Confidence 5678899999998776677554 577778999999 986
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.05 E-value=30 Score=19.82 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhCC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTHD 65 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~~ 65 (176)
++|++.. .-....+.++..+||.|..+.+. +--+|-..+.+.++ ++.-+.
T Consensus 29 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g 88 (114)
T 2cq4_A 29 FCMQLAA--RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTG 88 (114)
T ss_dssp EEESCCT--TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCC
Confidence 4677653 23345688888999998877653 12456667888888 773343
No 99
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.93 E-value=28 Score=19.41 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=32.7
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 15 l~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 15 LYVGGLAE--EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp EEEESCCS--SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 35788754 23456788888999998766652 12355557888888 7743
No 100
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.68 E-value=28 Score=20.03 Aligned_cols=48 Identities=13% Similarity=0.189 Sum_probs=32.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++...||+|..+.+. +--+|...+.+.++ ++..
T Consensus 31 ~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 31 FIGGLSF--ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp EEECCTT--CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 4677653 23456678888999998665542 23456667888888 8854
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.44 E-value=25 Score=18.77 Aligned_cols=49 Identities=22% Similarity=0.169 Sum_probs=32.3
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
.=++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++.
T Consensus 7 ~l~v~nlp~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 7 GLYIRGLQP--GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp EEEEESCCT--TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 345787654 23445677888899998776542 12456677888888 774
No 102
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=51.98 E-value=37 Score=20.56 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.4
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC-----eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL-----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~-----~~~v~i~~~~~i~-vl~~ 63 (176)
++||+.. .--...+.+++.+||.|..+.+.. .-+|...+++.++ .+..
T Consensus 32 ~V~NL~~--~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 32 IVENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEESCCS--CCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH
T ss_pred EECCCCC--CCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH
Confidence 3788742 234557889999999987776532 2566777888777 6643
No 103
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=51.75 E-value=30 Score=19.43 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=32.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 27 ~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 27 FVTGVHE--EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp EEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 4777654 23456688888999998776652 22355667888888 7753
No 104
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.74 E-value=29 Score=19.18 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=33.1
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC------------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG------------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~------------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 8 l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 8 LFIKNLNF--STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp EEEESCCT--TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 35777654 23456778888999998766553 12355667888888 8864
No 105
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=51.58 E-value=31 Score=19.46 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=33.1
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
+=++||+.. +--...+.+++.+||+|..+.+. |--+|-..+++.+. +..
T Consensus 9 wL~VgNL~~--~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~ 61 (89)
T 2wbr_A 9 WLLLKNLTA--QIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQM 61 (89)
T ss_dssp EEEEECCCT--TCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred eEEEeCCCc--cCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHH
Confidence 335788754 33457889999999999877642 33466667887666 653
No 106
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=51.30 E-value=31 Score=19.37 Aligned_cols=49 Identities=14% Similarity=0.079 Sum_probs=34.6
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~ 63 (176)
=+++++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 14 l~V~nl~~--~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 14 LFVRNLAN--TVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp EEEECCCT--TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHH
Confidence 35777754 23456788888999999877764 33566678888888 7753
No 107
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=50.81 E-value=44 Score=21.60 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=32.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+.+.++ ++..
T Consensus 113 ~V~nLp~--~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~ 169 (193)
T 2voo_A 113 YIKGFPT--DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 169 (193)
T ss_dssp EEECCCT--TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC
T ss_pred EecCCCC--cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh
Confidence 4677653 34557788999999998766542 22455667888888 8854
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.49 E-value=33 Score=19.57 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=31.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+.+.++ ++..
T Consensus 33 ~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 33 HVSNIPF--RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp EEESCCT--TCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred EEECCCC--cCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 4666643 23456788888999998666552 23456667888888 7753
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=50.37 E-value=38 Score=20.17 Aligned_cols=50 Identities=20% Similarity=0.162 Sum_probs=33.8
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
.-+++++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 48 ~l~V~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 48 CLGVFGLSL--YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CBCEETCTT--SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 345777654 23455688888999998777652 12456667888888 8753
No 110
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=50.24 E-value=46 Score=21.12 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=32.4
Q ss_pred ecccccCCCCchHHHHHHHHhhCCeEEEecC-----CeeEEEeccHHHHH-HHHh
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~~~~v~i~~~~~i~-vl~~ 63 (176)
+||+.. .-....+.+++.+||.|-++.+. +.-+|-..+.+.++ .+..
T Consensus 51 VgNL~~--~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~ 103 (164)
T 1sjr_A 51 VENLFY--PVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS 103 (164)
T ss_dssp ECSCCS--CCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH
T ss_pred EeCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH
Confidence 677643 23456788999999998777653 23466677888888 7654
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=49.95 E-value=34 Score=19.43 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=33.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.+. ++.
T Consensus 30 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 30 FVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 5777654 23456688888999999877663 23466678888888 775
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=49.89 E-value=36 Score=19.75 Aligned_cols=48 Identities=23% Similarity=0.259 Sum_probs=33.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 11 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 67 (116)
T 2fy1_A 11 FIGGLNR--ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 (116)
T ss_dssp EEECCTT--TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 5677654 23456788888999998766552 23466678889888 8754
No 113
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.05 E-value=33 Score=19.15 Aligned_cols=50 Identities=20% Similarity=0.151 Sum_probs=33.5
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
-=++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 17 ~l~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 17 NLYVKNLDD--GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CEEEECCCT--TCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 345788754 23446678888899998776653 12356667888888 7753
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.02 E-value=37 Score=19.66 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=34.3
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.=++|||.. .-...-+.++..+||.|..+.+. |--+|-..+.+.++ ++.
T Consensus 18 ~LfV~nLp~--~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~ 70 (105)
T 1sjq_A 18 VIHIRKLPI--DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 70 (105)
T ss_dssp EEEECSCCT--TSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 345788754 23345688999999998777653 34577777888888 775
No 115
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.23 E-value=35 Score=19.08 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=32.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++.
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 19 YVGNLSR--DVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp EEESCCT--TCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHH
T ss_pred EEeCCCc--cCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHH
Confidence 5777754 23456788888999998776652 23466677888888 775
No 116
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=48.19 E-value=27 Score=19.51 Aligned_cols=47 Identities=9% Similarity=0.240 Sum_probs=31.4
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+.+.++ ++.
T Consensus 13 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 13 FVGGIDV--RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 4677653 23456678888999998766652 22355566888888 775
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=47.37 E-value=35 Score=18.95 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=31.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++.
T Consensus 4 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~ 55 (101)
T 2hvz_A 4 YVGNLGT--GAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVR 55 (101)
T ss_dssp EEECCCS--SCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHH
Confidence 3566543 23456678888999998766652 33466678888888 775
No 118
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.15 E-value=35 Score=18.85 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=33.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 12 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 69 (99)
T 1whw_A 12 FVRNLSY--TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69 (99)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 4677653 23455788888999999877762 23466678888888 7743
No 119
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=46.55 E-value=59 Score=21.28 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=40.2
Q ss_pred ChhHHHHHhhhhhhcCChHHHhhhhHHHHHHHHHHHHHHHHHhcCC-CcccHHHHHHHHH
Q 036759 93 GSYWRKIRKLCTQNLLTNAKINYFQPIRKEELDLLIEYFKEAARAP-CVVDISAKLSAVS 151 (176)
Q Consensus 93 g~~~~~~R~~~~~~~f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~ 151 (176)
-..|..+...++ ..|++.++..-......++++-.+.+.+....+ ...++.+++..|.
T Consensus 110 ~~k~q~~~~~ls-~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~~~e~dv~~Fl~~y~ 168 (192)
T 2p22_C 110 VASWQDYHSEFS-KKYGDIALKKKLEQNTKKLDEESSQLETTTRSIDSADDLDQFIKNYL 168 (192)
T ss_dssp HHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 345555557776 789999998777777777777777777654222 2578888886654
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.66 E-value=44 Score=19.56 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=33.6
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.=++||+..- .-...-+.+++.+||.|..+.+. +.-+|-..+.+.+. ++.
T Consensus 27 ~l~V~NLp~~-~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 27 VIHLSNLPHS-GYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp EEEEESCCCS-SCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHH
T ss_pred EEEEeCCCCc-cCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHH
Confidence 3457887641 02445688888999998777653 33466667888887 764
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=45.49 E-value=41 Score=19.19 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~ 64 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|...+.+.++ ++...
T Consensus 29 fV~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 29 FIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp EEESCCT--TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred EEeCCCC--CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 5677653 23455688888999998776652 12467778899888 88543
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.31 E-value=46 Score=19.72 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=33.6
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.=++|+|.. .-...-+.+++..||.|..+.+. +.-+|-..+.+.+. ++.
T Consensus 33 ~LfVgNLp~--~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 33 VIHIRKLPI--DVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp EEEEESCCT--TCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 345788764 23456788999999998766653 33566667888887 764
No 123
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.26 E-value=39 Score=18.85 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCCCCceecccccCCCCchHHHHHHHHh-hCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 8 GPKGFPIVGCLHLLGKFPPRALHKLAKI-YGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 8 gp~~~p~~G~~~~~~~~~~~~~~~~~~~-yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
.|..-=++|++.. .-....+.++..+ ||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 7 ~~~~~l~V~nLp~--~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 70 (104)
T 2dhg_A 7 GPEYSLFVGDLTP--DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE 70 (104)
T ss_dssp SCCCCEEEECCCT--TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCC--CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH
Confidence 3433446788764 2345567888888 9998776652 12356667889888 8754
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.73 E-value=40 Score=18.79 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=31.4
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++..
T Consensus 12 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 12 FVGNIPY--EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp EEESCCT--TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred EEeCCCC--cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4677653 23456688888999988665542 12355567888888 8753
No 125
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=44.70 E-value=38 Score=18.50 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=32.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC--------eeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL--------MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~~~~i~-vl~ 62 (176)
+++++.. .-....+.++..+||+|..+.+.. .-+|-..+++.++ ++.
T Consensus 20 ~v~nlp~--~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 20 FVGNLEA--RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp EEECCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 4677654 234567888899999987766521 2356667888888 775
No 126
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=44.37 E-value=52 Score=20.03 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=31.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+++.+. ++..
T Consensus 91 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 148 (167)
T 2cjk_A 91 FVGGIGP--DVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQN 148 (167)
T ss_dssp EEEEECT--TCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHC
T ss_pred EECCCCC--CCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhC
Confidence 3566543 23346678888999998766642 12456667899988 8853
No 127
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=43.96 E-value=45 Score=19.16 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=31.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++..
T Consensus 44 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 101 (118)
T 2khc_A 44 FIYHLPQ--EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 101 (118)
T ss_dssp EEECSCT--TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4566543 23356788888999998777653 12356667888888 7754
No 128
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=43.92 E-value=58 Score=20.46 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=34.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhCC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTHD 65 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~~ 65 (176)
++|++.. .-....+.++..+||+|..+.+. |.-+|...+++.++ ++..+.
T Consensus 17 ~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 76 (196)
T 1l3k_A 17 FIGGLSF--ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARP 76 (196)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCS
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCC
Confidence 5788764 23456788899999998765542 12467778999999 886543
No 129
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=43.77 E-value=45 Score=19.17 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=33.8
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC-----C----eeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----L----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+|..+.+. + --+|...+++.++ ++..
T Consensus 9 lfV~nL~~--~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 9 VTFARLND--NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC--CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 35788753 23456788899999998776642 1 2366778899888 7753
No 130
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.34 E-value=35 Score=17.68 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=29.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~ 64 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+++.++ ++...
T Consensus 4 ~v~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 4 FIGGLSW--QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp EEESCCS--SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 3566543 23345678888999987655431 12345556788888 77543
No 131
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.17 E-value=29 Score=19.39 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. .-+|-..+++.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (103)
T 2cq0_A 19 RVTNLSE--DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 76 (103)
T ss_dssp EEESCCT--TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 5777654 234556778888999987766521 2356667888888 8753
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=43.11 E-value=41 Score=18.44 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=32.8
Q ss_pred ceecccccCC--CCchHHHHHHHHhhCCeEEEecC------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLG--KFPPRALHKLAKIYGPIMHLRLG------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~--~~~~~~~~~~~~~yg~i~~~~~~------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++..-. .+....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 11 l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3578875421 11122344889999998877653 34577778888888 7753
No 133
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=42.84 E-value=52 Score=19.57 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=32.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-----C----eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----L----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. + --+|-..+.+.++ ++..
T Consensus 46 ~V~nLp~--~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 103 (139)
T 1u6f_A 46 MVNYIPT--TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG 103 (139)
T ss_dssp EEESCST--TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4677653 23345788888999998766552 1 2356667888888 8754
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=42.59 E-value=99 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.3
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
-++|||.. .-....+.+++.+||+|..+.+. |--+|...+++.+. ++..
T Consensus 105 lfV~nL~~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 105 LFVARVNY--DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred EEEeCCCC--CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 35777653 23345778888999998776652 22466677888888 7754
No 135
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.51 E-value=46 Score=18.85 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.+. ++..
T Consensus 29 ~V~nl~~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 29 YCGGIAS--GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp EEECCSS--CCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 4677654 23456778888999998777653 34567778888888 7743
No 136
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.35 E-value=40 Score=18.15 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=30.9
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FL 61 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl 61 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.++ +.
T Consensus 9 ~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 9 FVGRCTG--DMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp EEESCCS--SSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTT
T ss_pred EEeCCCC--CCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHh
Confidence 4677653 23456778888999998877763 23466667877777 54
No 137
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.61 E-value=48 Score=18.82 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=34.1
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.=++||+.. .-...-+.++...||.|..+.+. +.-+|-..+.+.+. ++.
T Consensus 17 ~l~V~nLp~--~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 17 VLHIRKLPG--EVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp EEEEESCCT--TCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 345788764 23455678888999998776653 34567777888888 774
No 138
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=41.27 E-value=49 Score=18.87 Aligned_cols=48 Identities=17% Similarity=0.147 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|...+.+.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (115)
T 2dgo_A 19 FVGDLSP--EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 76 (115)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 5777654 23456788888999998766552 12356667888888 8754
No 139
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=41.14 E-value=63 Score=20.04 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=33.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|+|.. .-....+.+++.+||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 76 ~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 133 (165)
T 1rk8_A 76 FVTSIHE--EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133 (165)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH
Confidence 5777754 33456788889999998766652 22456667888888 7753
No 140
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=41.00 E-value=46 Score=18.40 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=30.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEE--------EecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMH--------LRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~--------~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||.|.. +.+. |--+|...+.+.++ ++.
T Consensus 17 ~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 17 FVQGLGE--NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp EEECCCS--SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 5788754 2345677888899998765 4331 12355567888888 774
No 141
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.68 E-value=46 Score=18.35 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=31.0
Q ss_pred eecccccCC--CCchHHHHHHHHhhCCeEEEecC------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLG--KFPPRALHKLAKIYGPIMHLRLG------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~--~~~~~~~~~~~~~yg~i~~~~~~------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++..-. .+....+.++..+||+|..+.+. +.-+|-..+++.++ ++.
T Consensus 13 ~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~ 70 (96)
T 2dgx_A 13 QVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVN 70 (96)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHH
Confidence 578875421 11122334889999999877763 22466677888888 775
No 142
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.44 E-value=49 Score=18.65 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
.-++|++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++..
T Consensus 17 ~l~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 76 (111)
T 1x4h_A 17 TVFIRNLSF--DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA 76 (111)
T ss_dssp CEEEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH
Confidence 345788764 23456788888999998777653 12456667888888 7754
No 143
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=40.15 E-value=55 Score=19.06 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=35.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh-CCccc
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT-HDLIF 68 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~-~~~~~ 68 (176)
+++++.. .-....+.++..+||+|..+.+. +.-+|...+++.++ ++.. +...+
T Consensus 26 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 26 FVTGVHE--EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 5777753 23456788888999998877652 23467778999888 7753 43333
No 144
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=39.77 E-value=75 Score=20.57 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=33.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|+|.. .--...+.++..+||+|..+.+. |--+|-..+.+.+. ++..
T Consensus 19 fVgnLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 19 YVGDLHP--DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH
Confidence 5788754 23456788889999998766542 12466677888888 7754
No 145
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=39.33 E-value=43 Score=17.62 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=30.7
Q ss_pred ecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
+|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 6 V~nlp~--~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 6 VGDLNV--NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp EECCCT--TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 566543 23345678888999998766542 12366677888888 7753
No 146
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=39.32 E-value=53 Score=18.70 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=33.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+ -|--+|-..+.+.++ ++..
T Consensus 35 ~V~nLp~--~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 35 FVRPFPL--DVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp EECSSCT--TCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 4677643 2335568888899999876665 344566678888888 7753
No 147
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=39.25 E-value=13 Score=21.60 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhCCeEEEecCCe-eEEEeccHHHHH-HHHh
Q 036759 26 PRALHKLAKIYGPIMHLRLGLM-TTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 26 ~~~~~~~~~~yg~i~~~~~~~~-~~v~i~~~~~i~-vl~~ 63 (176)
..-+.++.+.||.|.--|+-.+ -.+++.+++.++ ++..
T Consensus 19 t~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 19 TSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp HHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred hHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHh
Confidence 5678888899998776677554 577889999999 9963
No 148
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=39.19 E-value=76 Score=21.65 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=35.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHhCCccc
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKTHDLIF 68 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~~~~~~ 68 (176)
++|++.. .-....+.++...||+|..+.+. +.-+|...+++.++ ++..+...+
T Consensus 45 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 105 (292)
T 2ghp_A 45 LVKNLPK--SYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 105 (292)
T ss_dssp EEEEECT--TCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEe
Confidence 5777654 23456788889999998766542 23467778999999 885443333
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=38.96 E-value=64 Score=19.48 Aligned_cols=47 Identities=19% Similarity=0.284 Sum_probs=31.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++.
T Consensus 4 ~V~nlp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~ 59 (166)
T 3md3_A 4 YVGNLDK--AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQ 59 (166)
T ss_dssp EEEEEET--TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHH
T ss_pred EECCCCC--cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHH
Confidence 3566553 23456678888999998776652 22466667888888 773
No 150
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=38.96 E-value=58 Score=19.03 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=38.2
Q ss_pred CCCCCCCCceecccccCC--CCc------hHHHHHHHHhhCCeEEEecC-----CeeEEEeccHHHHH-HHHh-CCcccc
Q 036759 5 LPPGPKGFPIVGCLHLLG--KFP------PRALHKLAKIYGPIMHLRLG-----LMTTIVVSSPQAAE-FLKT-HDLIFA 69 (176)
Q Consensus 5 ~ppgp~~~p~~G~~~~~~--~~~------~~~~~~~~~~yg~i~~~~~~-----~~~~v~i~~~~~i~-vl~~-~~~~~~ 69 (176)
.||.|..+=+|.|+..-. .++ ..-+.+...+||.|..+.+. |.-+|-..+++.++ .+.. ++..|.
T Consensus 2 ~~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 2 VQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356676666677765542 122 23445666889998766652 33455566888777 6643 444443
Q ss_pred C
Q 036759 70 S 70 (176)
Q Consensus 70 ~ 70 (176)
+
T Consensus 82 G 82 (114)
T 3s6e_A 82 G 82 (114)
T ss_dssp T
T ss_pred C
Confidence 3
No 151
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=38.72 E-value=69 Score=19.82 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=31.0
Q ss_pred ecccccCCCCchHHHHHHHHhhC--CeEEEecC-----C----eeEEEeccHHHHH-HHHh
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYG--PIMHLRLG-----L----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg--~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~ 63 (176)
+|+|.. .-....+.++..+|| +|..+.+. + --+|-..+.+.++ ++..
T Consensus 60 VgnLp~--~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ 118 (156)
T 3n9u_C 60 VGSFSW--WTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL 118 (156)
T ss_dssp EECCCT--TCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCC--CCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 555432 233467888889999 88766541 1 2466677888888 8855
No 152
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.09 E-value=53 Score=18.27 Aligned_cols=48 Identities=13% Similarity=0.230 Sum_probs=33.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 19 HVSNIPF--RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp EEESCCT--TCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 5777754 23455678888999998776652 23466678888888 7753
No 153
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.91 E-value=50 Score=17.96 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=33.1
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHH
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~ 62 (176)
=+++++.. .-....+.++..+||+|..+.+.. .-+|-..+++.++ ++.
T Consensus 8 l~v~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 8 LYVGSLHF--NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 35777754 234567888889999987766521 3466677888888 775
No 154
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.85 E-value=54 Score=18.31 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=31.4
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC----------CeeEEEeccHHHHH-HH
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----------LMTTIVVSSPQAAE-FL 61 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----------~~~~v~i~~~~~i~-vl 61 (176)
=++|++.. .-....+.++...|| |..+.+. +--+|-..+++.++ ++
T Consensus 18 l~V~nlp~--~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 18 AFLGNLPY--DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp EEEESCCS--SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH
T ss_pred EEEeCCCC--cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH
Confidence 35788754 234556788888999 8777653 12466678888888 77
No 155
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=37.78 E-value=48 Score=17.72 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=30.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++.
T Consensus 10 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 66 (89)
T 3ucg_A 10 YVGNVDY--GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 66 (89)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGG
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHh
Confidence 3566543 23445678888999998766542 12356667888888 773
No 156
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.31 E-value=58 Score=18.50 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=32.4
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecCC--------eeEEEeccHHHHH-HHH
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL--------MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~~~~i~-vl~ 62 (176)
=+++++.. .-....+.++..+||+|..+.+.. .-+|...+.+.++ ++.
T Consensus 18 l~V~nlp~--~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 74 (114)
T 2do0_A 18 VFVANLDY--KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAIS 74 (114)
T ss_dssp EEEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHH
Confidence 35777754 234567888899999987665421 2356667888888 775
No 157
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=37.24 E-value=55 Score=18.30 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=31.9
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 33 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 33 LVSNLDF--GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4677653 23456678888999998766543 12355667888888 7753
No 158
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.05 E-value=59 Score=18.57 Aligned_cols=48 Identities=23% Similarity=0.197 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 21 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 78 (116)
T 2cqd_A 21 FVGGLPY--HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78 (116)
T ss_dssp EEECCCS--SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 5777754 234567888889999987776532 2466678889888 8854
No 159
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=36.63 E-value=55 Score=18.09 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=31.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||.|..+.+. +--+|-..+.+.+. ++..
T Consensus 31 ~V~nlp~--~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 31 YIGNIPH--FATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEcCCCc--ccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 4677653 23456788888999998776653 33456667888777 7643
No 160
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.29 E-value=57 Score=18.16 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=34.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+++.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 19 YVGGLDE--KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 5788754 234567888899999998776532 2466778899988 8864
No 161
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.12 E-value=59 Score=18.26 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=33.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCC-eEEEecC----------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGP-IMHLRLG----------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~-i~~~~~~----------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+ |..+.+. +--+|-..+++.+. ++..
T Consensus 12 ~V~nLp~--~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 71 (109)
T 2dis_A 12 FIGGIPK--MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK 71 (109)
T ss_dssp EEECCCT--TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT
T ss_pred EEeCCCC--cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH
Confidence 5777753 2345677888899998 8776654 23466677898888 8853
No 162
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.04 E-value=57 Score=18.11 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=33.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 17 ~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 17 KVDNLTY--RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp EEESCCT--TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 5788754 23456788888999998877653 22466677888888 7753
No 163
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=35.88 E-value=51 Score=17.49 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=32.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 10 ~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 10 FVGDLSP--EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4677654 234566888889999987665421 2355667888888 7753
No 164
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.38 E-value=58 Score=18.00 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=32.8
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
=+++++.. .-....+.++..+||+|..+.+.. .-+|-..+++.++ ++..
T Consensus 15 l~v~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 15 LFVGGLSF--DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp EEEESCCT--TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred EEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 35777754 234566888889999987666532 2356667888888 7743
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=34.53 E-value=79 Score=19.25 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=33.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-----C----eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-----L----MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-----~----~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. + --+|...+++.++ ++..
T Consensus 43 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 43 YVGNLSF--YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 5677653 23456788889999998777651 1 2356667888888 8864
No 166
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.53 E-value=60 Score=17.89 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 21 ~v~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 21 FISGLPF--SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp EEESCCT--TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 5777654 23455688888999998776652 22456667888888 7744
No 167
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=34.31 E-value=66 Score=18.27 Aligned_cols=47 Identities=26% Similarity=0.354 Sum_probs=32.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+++.++ ++.
T Consensus 30 ~V~nLp~--~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 30 YVGSLHF--NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp EEECCCS--SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 4777754 23456678888999998766542 12356667888888 775
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.93 E-value=67 Score=19.02 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=30.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCe------EEEec---C---CeeEEEeccHHHHH-HHHhC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPI------MHLRL---G---LMTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i------~~~~~---~---~~~~v~i~~~~~i~-vl~~~ 64 (176)
++++|.. .-...-+.+++..||+| +++.. + |--+|...+++.++ ++..+
T Consensus 27 ~V~nLp~--~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~ 88 (123)
T 2dha_A 27 RMRGLPF--TATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKH 88 (123)
T ss_dssp EECSCCT--TCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhC
Confidence 4677653 34456788888999874 22221 1 12356667888888 88543
No 169
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=33.68 E-value=93 Score=19.84 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++.
T Consensus 32 ~V~nLp~--~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 32 YVGSIYY--ELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp EEECCCT--TCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHH
Confidence 4566543 23456788889999998777652 23467778999988 875
No 170
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=33.20 E-value=70 Score=18.24 Aligned_cols=62 Identities=8% Similarity=0.019 Sum_probs=35.9
Q ss_pred CCCCCceeccccc---CCCCchHHHHHHHHhhCCeEEEecC----------CeeEEEeccHHHHH-HHHh-CCcccc
Q 036759 8 GPKGFPIVGCLHL---LGKFPPRALHKLAKIYGPIMHLRLG----------LMTTIVVSSPQAAE-FLKT-HDLIFA 69 (176)
Q Consensus 8 gp~~~p~~G~~~~---~~~~~~~~~~~~~~~yg~i~~~~~~----------~~~~v~i~~~~~i~-vl~~-~~~~~~ 69 (176)
.|...=++.|+.. +..+...-+.+...+||+|..+.+. |.-+|-..+++.+. .... ++..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3444556777753 2234566778888999998766542 12345556888777 6643 444443
No 171
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.09 E-value=62 Score=17.60 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=31.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEE-ecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHL-RLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~-~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+ .+. +--+|-..+++.++ ++.
T Consensus 9 ~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 9 FIGNLDP--EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 4677654 23456788888999987554 331 23466678899888 885
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=32.97 E-value=1e+02 Score=20.02 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=34.6
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HHH
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl~ 62 (176)
=++||+... .--...+.++..+||+|..+.+. |.-+|...+++.++ ++.
T Consensus 7 l~V~nL~~~-~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 7 LMVYGLDQS-KMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp EEEECCCTT-TCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHH
T ss_pred EEEeCCCcc-cCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 357887521 22345788889999999887753 34678888998888 774
No 173
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.59 E-value=71 Score=18.13 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HHHh
Q 036759 26 PRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 26 ~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl~~ 63 (176)
...+.+++.+||+|..+.+. |--+|-..+++.+. ++..
T Consensus 31 e~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~ 73 (100)
T 2d9o_A 31 KDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN 73 (100)
T ss_dssp HHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh
Confidence 56788999999998877763 23466777888888 8754
No 174
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.55 E-value=62 Score=17.42 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++.
T Consensus 12 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 12 FIGNLPR--EATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp EEESCCS--SCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHH
Confidence 5777754 23456688889999998777653 34566778888888 774
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=31.96 E-value=72 Score=18.01 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=32.6
Q ss_pred eecccccCCC-CchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGK-FPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~-~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. . -....+.++..+||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 31 ~V~nl~~--~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 31 FIGNLNT--ALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp EECSCCC--SSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCc--ccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 5777654 2 3456788889999998776652 33456667888888 7743
No 176
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.74 E-value=73 Score=18.05 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=31.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC--------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL--------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 29 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 29 YISNLPL--SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp EEESCCT--TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4677653 234556788889999987766521 2355667888888 7753
No 177
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.61 E-value=71 Score=17.87 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=35.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEE-EecC--------CeeEEEeccHHHHH-HHHhCCcccc
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMH-LRLG--------LMTTIVVSSPQAAE-FLKTHDLIFA 69 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~-~~~~--------~~~~v~i~~~~~i~-vl~~~~~~~~ 69 (176)
++|+|.. .-....+.+++..||.|.. +.+. |--+|-..+++.++ ++..+...+.
T Consensus 19 ~V~nLp~--~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~ 82 (104)
T 1wg5_A 19 RLRGLPF--GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIG 82 (104)
T ss_dssp EEESCCT--TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhC
Confidence 5777654 3345678888899998654 4331 33577778999999 8865443333
No 178
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.60 E-value=73 Score=18.01 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=24.6
Q ss_pred HHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHH
Q 036759 27 RALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 27 ~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~ 62 (176)
.-+.+....||.|.-+++ .++-+|...+.+.+. ++.
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~ 67 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS 67 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG
T ss_pred HHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh
Confidence 445666678999887775 344566666877777 664
No 179
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=31.35 E-value=1e+02 Score=19.52 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=32.2
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.+++.+||+|..+.+. +.-+|...+.+.++ ++..
T Consensus 92 ~V~nLp~--~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 92 LVSNLDF--GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp EEECCCS--CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 3566543 23356688888999998776652 23466778888888 8753
No 180
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=31.32 E-value=63 Score=17.13 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=32.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC----------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 8 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 8 HIGRLTR--NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 4666643 23455678888999998766651 22466677888888 8753
No 181
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=31.31 E-value=94 Score=19.15 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=25.2
Q ss_pred ChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q 036759 109 TNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAV 150 (176)
Q Consensus 109 ~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 150 (176)
-...+..+...+.+.++.++..... .+.++|+...++.+
T Consensus 57 Eyee~~~i~eql~~~i~~~L~~y~~---~~~pldLg~VLrdy 95 (152)
T 3euj_B 57 EYESLTDVQTQIVTAIQAELAHFRN---TAQPINLGAVLQEQ 95 (152)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH---SSCCBCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---cCCCccHHHHHHHH
Confidence 3444556667778888888888777 67888887776654
No 182
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=31.28 E-value=65 Score=17.31 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=32.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+. +.-+|-..+.+.++ ++..
T Consensus 12 ~V~nlp~--~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 12 FVRNLPF--DFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp EECSCCT--TCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 4777754 33456788888999998766553 22355667888888 7753
No 183
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=29.86 E-value=81 Score=17.99 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=35.1
Q ss_pred CCCceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 10 KGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 10 ~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
...=++||+.. .--..-+.++..+||+|..+.+. |.-+|-..+.+.++ ++.
T Consensus 21 s~~l~V~NLp~--~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 21 SPVVHIRGLID--GVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CSEEEEESCCT--TCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred CcEEEEeCCCC--CCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 33456788763 23446778999999998766652 44577777888888 764
No 184
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.82 E-value=70 Score=17.19 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=34.8
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHh
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~ 63 (176)
-=++|++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 11 ~l~V~nlp~--~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 11 KIFVGNVSA--ACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CEEEESCCT--TCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 345788754 23456778888999998877764 33466678888888 7753
No 185
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.44 E-value=77 Score=17.60 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=33.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHhCC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKTHD 65 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~~~ 65 (176)
+++++.. .-....+.++..+||+|..+.+.. --+|-..+++.++ ++..+.
T Consensus 20 ~V~nlp~--~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~ 79 (105)
T 2dh8_A 20 FVGGLDW--STTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRP 79 (105)
T ss_dssp CCBSCCT--TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCC
Confidence 4677653 234567788889999987665421 2356667888888 886543
No 186
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=29.42 E-value=96 Score=18.65 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=32.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 6 ~v~nlp~--~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 6 IVNYLPQ--NMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 4566543 23456678888999998766542 22466678999988 8753
No 187
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=29.40 E-value=67 Score=16.88 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=33.3
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 10 l~V~nl~~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 10 LYVGGLAE--EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp EEEECCCT--TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred EEEECCCC--CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 35777754 23456778888999998877652 12466677888888 7743
No 188
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.73 E-value=82 Score=17.67 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=32.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC------eeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL------MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~------~~~v~i~~~~~i~-vl~ 62 (176)
+++++.. .-....+.++..+||+|..+.+.. --+|...+.+.++ ++.
T Consensus 26 ~V~nLp~--~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 26 YVGNLPP--DIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHH
Confidence 4777754 234567888999999987665421 2366777888888 774
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=28.66 E-value=92 Score=18.19 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++ .-....+.++..+||+|..+.+. +--+|...+.+.+. ++..
T Consensus 43 fVgnl----~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 43 YVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp EEECS----SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH
T ss_pred EEcCC----CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH
Confidence 56773 23456788889999998766553 33566667888888 7743
No 190
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.62 E-value=78 Score=17.35 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=35.4
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHhCCccc
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKTHDLIF 68 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~~~~~~ 68 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.++ ++.-+...+
T Consensus 14 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~ 76 (99)
T 2dgs_A 14 FVGGIPH--NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76 (99)
T ss_dssp EEESCCS--SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBS
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEE
Confidence 5777754 23456688888999998776652 22466678899888 885443333
No 191
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.60 E-value=86 Score=17.84 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=35.7
Q ss_pred CCCCCceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 8 GPKGFPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 8 gp~~~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.|...=++|||..- .-...-+.+++..||.|..+.+. +.-+|-..+.+.+. ++.
T Consensus 13 ~p~~~l~V~nLp~~-~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 13 ETRRVVHIMDFQRG-KNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCCEEEEESCCCS-SSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCC-cCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHH
Confidence 34444457887530 12345678888999999877764 23577777888888 764
No 192
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.46 E-value=78 Score=17.32 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=32.6
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeE-EEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIM-HLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~-~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+|. .+.+. +--+|-..+++.++ ++..
T Consensus 12 l~V~nLp~--~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 71 (99)
T 2div_A 12 LWMGDLEP--YMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71 (99)
T ss_dssp EEECSCCT--TCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT
T ss_pred EEEeCCCC--CCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH
Confidence 35788754 234567788889999987 66542 12355567888888 8753
No 193
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=27.99 E-value=1.1e+02 Score=18.67 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=31.3
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC--------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL--------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~--------~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+.. --+|-..+++.+. ++..
T Consensus 99 ~v~nl~~--~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 99 FIGMISK--KCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEESCCT--TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcCCCC--cCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 4555543 233467888889999987665421 1466667888888 7744
No 194
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=27.67 E-value=76 Score=16.96 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=28.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+ +. ++..
T Consensus 5 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~ 61 (90)
T 2ki2_A 5 YVGNLVY--SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK 61 (90)
T ss_dssp EEEEECT--TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT
T ss_pred EECCCCC--CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH
Confidence 3566543 23345677778889998766552 12355667888 66 6643
No 195
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=27.58 E-value=94 Score=18.86 Aligned_cols=55 Identities=7% Similarity=0.031 Sum_probs=34.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC--------CeeEEEeccHHHHH-HHHhCCccccCC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG--------LMTTIVVSSPQAAE-FLKTHDLIFASR 71 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~--------~~~~v~i~~~~~i~-vl~~~~~~~~~~ 71 (176)
++++|.. .-..+.+.++...|| +..+.+. +--+|...+++.++ ++..+...+..+
T Consensus 50 fV~nLp~--~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 50 HMRGLPY--KATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp ECCSCCT--TCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred EEeCCCC--CCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 4666653 234567888889999 4455542 12467778888888 774444344433
No 196
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=27.49 E-value=1.1e+02 Score=18.53 Aligned_cols=47 Identities=26% Similarity=0.284 Sum_probs=32.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+. |.-+|-..+++.++ ++.
T Consensus 7 ~v~nlp~--~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 63 (168)
T 1b7f_A 7 IVNYLPQ--DMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 63 (168)
T ss_dssp EEECCCT--TCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHH
Confidence 4666653 23356688888999998777653 23566678999988 775
No 197
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.32 E-value=79 Score=17.04 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=33.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC-eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL-MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~-~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. .-+|-..+++.++ ++..
T Consensus 14 ~V~nLp~--~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 14 HVGNISP--TCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp EEESCCS--SCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHH
Confidence 5788754 234567888899999987777643 3456667888888 7743
No 198
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1
Probab=27.30 E-value=28 Score=17.07 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=7.6
Q ss_pred CCceeccccc
Q 036759 11 GFPIVGCLHL 20 (176)
Q Consensus 11 ~~p~~G~~~~ 20 (176)
.+|++||++.
T Consensus 30 ~ipilgn~fs 39 (57)
T 1b35_D 30 HIPVLGNIFS 39 (57)
T ss_dssp CCCCSCCSSS
T ss_pred cccccccccc
Confidence 4789999765
No 199
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=27.16 E-value=80 Score=17.00 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=28.5
Q ss_pred eecccccCCCCchHHHHHHHHhhC--CeEEEecC-----C----eeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYG--PIMHLRLG-----L----MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg--~i~~~~~~-----~----~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+|| +|..+.+. + --+|...+.+.++ ++.
T Consensus 5 ~V~nL~~--~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~ 63 (90)
T 3p5t_L 5 YIGNLTW--WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 63 (90)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHH
Confidence 4566643 234566788889999 77555431 1 1355556888888 774
No 200
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.10 E-value=80 Score=17.01 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=33.7
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
=+++++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 19 l~V~nlp~--~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 19 VYVSNLPF--SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp EEEESCCT--TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH
T ss_pred EEEECCCC--CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 35788753 23456688888999998777652 12466778888888 7743
No 201
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.07 E-value=92 Score=17.68 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=34.0
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~ 62 (176)
.=++||+.. .-....+.+++.+||.|..+.+. +.-+|-..+.+.+. ++.
T Consensus 17 ~l~V~nLp~--~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 17 VVHVRGLCE--SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp EEEEESCCS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHH
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHH
Confidence 345788753 23456788999999998877653 33566777888887 764
No 202
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.07 E-value=84 Score=17.24 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=33.4
Q ss_pred eecccccCCCCchHHHHHHHHhh--CCeEEEecC-CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIY--GPIMHLRLG-LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~y--g~i~~~~~~-~~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+| |.|..+.+. +.-+|-..+++.++ ++.
T Consensus 19 ~V~nLp~--~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 19 YVRNLML--STSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 5777754 23456788889999 888877653 34566778888888 775
No 203
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=26.67 E-value=1.1e+02 Score=18.23 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=27.9
Q ss_pred hhHHHHHhhhhhhcCChHHHhhhhH----HHHHHHHHHHHHHHHH
Q 036759 94 SYWRKIRKLCTQNLLTNAKINYFQP----IRKEELDLLIEYFKEA 134 (176)
Q Consensus 94 ~~~~~~R~~~~~~~f~~~~l~~~~~----~i~~~~~~~~~~~~~~ 134 (176)
-.|+.++++..+-.++...+..... -..+...++++.|...
T Consensus 18 m~~~~wK~laR~LGlse~~Id~I~~d~~~d~~Eq~~qlLr~W~~~ 62 (115)
T 3ezq_A 18 MTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQL 62 (115)
T ss_dssp SCHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcCCCHhhHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 3466666666644588777775442 2568888899999875
No 204
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.66 E-value=85 Score=17.16 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.7
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++ .-....+.++..+||+|..+.+. +--+|-..+++.+. ++..
T Consensus 19 ~V~n~----~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 19 YVYGE----DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp EEECS----SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH
T ss_pred EEcCC----CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 57773 33456788889999999877763 33466677888888 7754
No 205
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=26.59 E-value=84 Score=17.10 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=32.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+.+.++ ++..
T Consensus 6 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 6 YLGSIPY--DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred EEECCCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4676653 23456688888999998877652 23466677888888 7743
No 206
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia coli} PDB: 3crc_A*
Probab=26.43 E-value=95 Score=21.52 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhhhhhhhhc
Q 036759 116 FQPIRKEELDLLIEYFKEAARAPCVVDISAKLSAVSANMTCRMVL 160 (176)
Q Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~f 160 (176)
+.+.+.+++-++++.+.+ +..-++.+.+..+.++|+..+-.
T Consensus 34 l~~yl~eE~~Ev~daI~~----~d~~~l~eELGDvLlqVvf~a~i 74 (265)
T 3cra_A 34 IAPYTLEETYEVLDAIAR----EDFDDLRGELGDLLFQVVFYAQM 74 (265)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555543 12334444444444444443333
No 207
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=25.87 E-value=1.1e+02 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.231 Sum_probs=31.3
Q ss_pred eecccccCCCCchHHHHHHHHhhC--CeEEEecC-----C----eeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYG--PIMHLRLG-----L----MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg--~i~~~~~~-----~----~~~v~i~~~~~i~-vl~ 62 (176)
++|||.. .--...+.+++.+|| .|..+.+. + --+|...+.+.++ ++.
T Consensus 72 fVgnL~~--~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 72 YIGNLTW--WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEeCCCC--CCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4666643 233567888899999 88766642 1 1366677888888 874
No 208
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=25.12 E-value=78 Score=19.55 Aligned_cols=41 Identities=5% Similarity=-0.063 Sum_probs=20.8
Q ss_pred CChHHHhhhhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Q 036759 108 LTNAKINYFQPIRKEELDLLIEYFKEAARAPCVVDISAKLS 148 (176)
Q Consensus 108 f~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 148 (176)
|.+..|..+...+.+....+..........+...|+...+.
T Consensus 17 ~~~~~L~~lteqLi~~~~e~~~ry~~~ke~~~e~DFy~eVK 57 (140)
T 2huj_A 17 FQGMELLIRTEQLLLQNEKNWELYLSNREEEKPFDFYKDMK 57 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCTTTTHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccc
Confidence 34445555555555555555555544433444444444333
No 209
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.50 E-value=94 Score=18.02 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=29.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeE---EEe--c-C---CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIM---HLR--L-G---LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~---~~~--~-~---~~~~v~i~~~~~i~-vl~ 62 (176)
++|+|.. .--...+.+++..||+|. .+. . + |--+|-..+.+.++ ++.
T Consensus 29 ~V~nLp~--~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 29 YLKGLPF--EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEECCCT--TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH
Confidence 5777753 233456778888999752 222 1 1 12456667888888 885
No 210
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.33 E-value=1.2e+02 Score=18.02 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred eecccccCCC--CchHHHHHHHHhhCCeEEEecC------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGK--FPPRALHKLAKIYGPIMHLRLG------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~--~~~~~~~~~~~~yg~i~~~~~~------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++..-.. +....+.+++.+||+|..+.+. |.-+|...+.+.+. ++..
T Consensus 33 fV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~ 91 (127)
T 2a3j_A 33 LITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91 (127)
T ss_dssp EEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH
Confidence 5788753211 1123466788999999776652 23567778888888 7744
No 211
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.90 E-value=96 Score=16.80 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=32.2
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCeEEEe-cC-----CeeEEEeccHHHHH-HHH
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPIMHLR-LG-----LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~-~~-----~~~~v~i~~~~~i~-vl~ 62 (176)
=++|++.. .-....+.++..+||+|..+. +. +.-+|-..+++.++ ++.
T Consensus 18 l~V~nlp~--~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 18 LQIRNIPP--HLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp EEEEEECS--SSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHH
T ss_pred EEEEcCCC--CCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHH
Confidence 35788764 234566788889999987762 31 12466677888888 774
No 212
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=23.58 E-value=1e+02 Score=17.10 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=27.1
Q ss_pred hHHHHHhhhhhhcCChHHHhhhhHH----HHHHHHHHHHHHHHH
Q 036759 95 YWRKIRKLCTQNLLTNAKINYFQPI----RKEELDLLIEYFKEA 134 (176)
Q Consensus 95 ~~~~~R~~~~~~~f~~~~l~~~~~~----i~~~~~~~~~~~~~~ 134 (176)
.|+.++++..+-.++...+...... ..+...+++..|...
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~~~~~~d~~Eq~~qmL~~W~~~ 54 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIMHDSIQDTAEQKVQLLLCWYQS 54 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHHHTCTTCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 3566666666445787777644322 457888999999886
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=23.50 E-value=1.3e+02 Score=18.19 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++...||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 74 ~v~nl~~--~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 74 KVDNLTY--RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp EEESCCT--TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4677653 234566788889999987776532 2466778889888 8854
No 214
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.47 E-value=1.2e+02 Score=17.96 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 51 ~V~nLp~--~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 51 KVDNLTY--RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp EEECCCS--SCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4777653 234567788889999987776532 2466778888888 8843
No 215
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=22.96 E-value=1.1e+02 Score=17.00 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=32.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~ 62 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++.
T Consensus 17 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (106)
T 2dgp_A 17 FIGQIPR--NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 73 (106)
T ss_dssp EEESCCT--TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 5777753 234567888889999987776532 2466667888888 774
No 216
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.89 E-value=1.1e+02 Score=17.23 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=31.1
Q ss_pred ceecccccCCCCchHHHHHHHHhhCCe----EEEecC-----CeeEEEeccHHHHH-HHHh
Q 036759 13 PIVGCLHLLGKFPPRALHKLAKIYGPI----MHLRLG-----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 13 p~~G~~~~~~~~~~~~~~~~~~~yg~i----~~~~~~-----~~~~v~i~~~~~i~-vl~~ 63 (176)
=++|++.. .-....+.++..+||+| +.+... +--+|-..+.+.++ ++..
T Consensus 28 l~V~nLp~--~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 86 (115)
T 2cpx_A 28 LYLKNLSP--RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 86 (115)
T ss_dssp EEEECCCT--TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH
T ss_pred EEEeCCCC--CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH
Confidence 35788753 23455677888889976 433321 23466678888888 8754
No 217
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=22.74 E-value=1.1e+02 Score=16.98 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=33.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC----------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL----------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~----------~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 77 (107)
T 2cph_A 19 LVRNIPF--QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 77 (107)
T ss_dssp EEESCCT--TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH
Confidence 5788754 234567888889999998777632 2456667888888 7754
No 218
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.64 E-value=1.2e+02 Score=17.35 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCeEEEec-CCeeEEEeccHHHHH-HHHhC
Q 036759 27 RALHKLAKIYGPIMHLRL-GLMTTIVVSSPQAAE-FLKTH 64 (176)
Q Consensus 27 ~~~~~~~~~yg~i~~~~~-~~~~~v~i~~~~~i~-vl~~~ 64 (176)
.-+.+....||.|.-+++ .++-+|...+.+.+. ++.-+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~ld 78 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVD 78 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHHGG
T ss_pred HHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHhcC
Confidence 345566677998776665 455455556877777 77533
No 219
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=22.45 E-value=1.1e+02 Score=16.89 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=30.9
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC----------CeeEEEeccHHHHH-HHHhCC
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----------LMTTIVVSSPQAAE-FLKTHD 65 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----------~~~~v~i~~~~~i~-vl~~~~ 65 (176)
++|++..- -....+.++..+|| |..+.+. |--+|-..+.+.++ ++.-+.
T Consensus 23 ~V~nLp~~--~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g 82 (100)
T 2j76_E 23 FLGNLPYD--VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 82 (100)
T ss_dssp EESCCSSC--CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTT
T ss_pred EEeCCCCC--CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCC
Confidence 46776532 22345677788899 8777652 12466677888888 773333
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=21.90 E-value=1.4e+02 Score=17.94 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=33.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC----CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~----~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. |--+|-..+.+.+. ++..
T Consensus 77 ~V~nl~~--~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 77 YVGNLGN--NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp EEESCCS--CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH
Confidence 5787754 23345678888999999877653 33566778888888 7753
No 221
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=21.68 E-value=1.2e+02 Score=17.16 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=27.8
Q ss_pred HHHHHHHHhhCCeEEEecC-----------CeeEEEeccHHHHH-HHHh-CCccccC
Q 036759 27 RALHKLAKIYGPIMHLRLG-----------LMTTIVVSSPQAAE-FLKT-HDLIFAS 70 (176)
Q Consensus 27 ~~~~~~~~~yg~i~~~~~~-----------~~~~v~i~~~~~i~-vl~~-~~~~~~~ 70 (176)
.-+.+...+||+|..+.+. |.-+|-..+++.++ .+.. ++..|..
T Consensus 30 ~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~G 86 (105)
T 3v4m_A 30 EDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFAN 86 (105)
T ss_dssp HHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred HHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4566777899999877753 22356667888877 6643 4444433
No 222
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=21.66 E-value=62 Score=19.19 Aligned_cols=16 Identities=25% Similarity=0.634 Sum_probs=12.9
Q ss_pred HHHHHHhhCCeEEEec
Q 036759 29 LHKLAKIYGPIMHLRL 44 (176)
Q Consensus 29 ~~~~~~~yg~i~~~~~ 44 (176)
-.++.++||.||++.+
T Consensus 10 ~~~lk~kygk~y~v~~ 25 (114)
T 3fgx_A 10 TDELKQKYGRVYEIRI 25 (114)
T ss_dssp HHHHHHHHSSEEEEEE
T ss_pred HHHHHHHhCceEEEEe
Confidence 4678899999998755
No 223
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.46 E-value=1.1e+02 Score=16.69 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=32.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +.-+|-..+++.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 19 FVGNLPP--DITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp EEESCCT--TCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH
Confidence 5777754 23456788888999998766653 33456667888888 7743
No 224
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=21.30 E-value=95 Score=16.74 Aligned_cols=48 Identities=10% Similarity=-0.054 Sum_probs=29.1
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEec-----C----CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRL-----G----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~-----~----~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+ . +--+|-..+++.++ ++..
T Consensus 19 ~V~nlp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 19 KVQNMPF--TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp EEECCCT--TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 4677653 2345567888889997632211 1 12355667888888 7753
No 225
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=21.14 E-value=1.1e+02 Score=16.61 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=34.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC-CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG-LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~-~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++..- .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 14 ~V~nlp~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 14 FIGNLPLK-NVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp EEESSTTS-CCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCcc-cCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHH
Confidence 57777520 12445678888999998777663 44567778899888 8754
No 226
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.05 E-value=1.4e+02 Score=17.70 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=31.0
Q ss_pred ecccccCCCCchHHHHHHHHhhCCeEEEecC---C-eeEEEeccHHHHH-HHH
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---L-MTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~-~~~v~i~~~~~i~-vl~ 62 (176)
+||+.. .--...+.+++.+||.|..+.+. | .-+|-..+.+.+. +..
T Consensus 30 V~NL~~--~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~ 80 (124)
T 2e5i_A 30 IQNPLY--PITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKA 80 (124)
T ss_dssp EESCCS--CCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHH
T ss_pred EcCcCC--CCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHH
Confidence 677653 23456789999999998666542 3 3566777887777 664
No 227
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.67 E-value=1.1e+02 Score=16.08 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=34.0
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecC---CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|..+.+. +--+|-..+++.++ ++..
T Consensus 16 ~V~~l~~--~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 16 YVGGLGD--TITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp EEECCTT--TSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT
T ss_pred EEcCCCC--CCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 5777754 23456778888999998776653 33566678899888 8753
No 228
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=20.54 E-value=1.2e+02 Score=16.50 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=30.0
Q ss_pred ecccccCCCCchHHHHHHHHhhC-CeEEEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 15 VGCLHLLGKFPPRALHKLAKIYG-PIMHLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 15 ~G~~~~~~~~~~~~~~~~~~~yg-~i~~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
+++|.. .-...-+.++..+|| +|..+.+. |--+|-..+++.++ ++..
T Consensus 6 v~nLp~--~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 6 LRMLPQ--AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp EETCCS--SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred EeCCCC--CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh
Confidence 555543 233567788889999 66555442 12456678889888 8853
No 229
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.49 E-value=97 Score=16.85 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=29.5
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEE---Ee--cC----CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMH---LR--LG----LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~---~~--~~----~~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|.. +. -. +--+|-..+++.++ ++..
T Consensus 19 ~v~nLp~--~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 19 KVQNMPF--TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp EEESCCT--TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4677653 2345667888899997631 11 11 22456667888888 8754
No 230
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=20.47 E-value=1.3e+02 Score=17.01 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=31.8
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeEEEecCC---------eeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIMHLRLGL---------MTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~~---------~~~v~i~~~~~i~-vl~~ 63 (176)
+++++.. .-....+.++..+||+|..+.+.. --+|-..+.+.++ ++..
T Consensus 29 ~V~nLp~--~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 29 FIYHLPQ--EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp EEESCCS--SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred EEeCCCC--CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 5777754 234567888889999986655421 2355667888888 7744
No 231
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.16 E-value=1.2e+02 Score=16.66 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=30.3
Q ss_pred CceecccccCCCCchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HH
Q 036759 12 FPIVGCLHLLGKFPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FL 61 (176)
Q Consensus 12 ~p~~G~~~~~~~~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl 61 (176)
.-++|++.. .-....+.++..+|| |..+.+. +--+|-..+++.++ ++
T Consensus 17 ~l~V~nLp~--~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 73 (103)
T 2dng_A 17 TAYVGNLPF--NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL 73 (103)
T ss_dssp EEEEESCCT--TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG
T ss_pred EEEEeCCCC--CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 345788754 234556788888886 7666542 12356667888888 77
No 232
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=20.14 E-value=1.2e+02 Score=16.68 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=32.3
Q ss_pred eecccccCCC----CchHHHHHHHHhhCCeEEEecC---------CeeEEEeccHHHHH-HHH
Q 036759 14 IVGCLHLLGK----FPPRALHKLAKIYGPIMHLRLG---------LMTTIVVSSPQAAE-FLK 62 (176)
Q Consensus 14 ~~G~~~~~~~----~~~~~~~~~~~~yg~i~~~~~~---------~~~~v~i~~~~~i~-vl~ 62 (176)
++|+++.... -....+.++..+||+|..+.+. |--+|...+++.++ ++.
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~ 72 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIK 72 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHH
Confidence 5677654321 1235677888999999877653 22466777888888 774
No 233
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.11 E-value=1.3e+02 Score=16.90 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=31.6
Q ss_pred eecccccCCCCchHHHHHHHHhhCCeE--------EEecC---------CeeEEEeccHHHHH-HHHh
Q 036759 14 IVGCLHLLGKFPPRALHKLAKIYGPIM--------HLRLG---------LMTTIVVSSPQAAE-FLKT 63 (176)
Q Consensus 14 ~~G~~~~~~~~~~~~~~~~~~~yg~i~--------~~~~~---------~~~~v~i~~~~~i~-vl~~ 63 (176)
++|++.. .-....+.++..+||+|. .+.+. +--+|-..+++.++ ++..
T Consensus 19 ~V~nLp~--~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 19 YVQGLND--SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp EEECCCT--TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred EEcCCCC--CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 5777753 234567888889999886 24432 12466667888888 7753
Done!