BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036760
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 134/279 (48%), Gaps = 33/279 (11%)
Query: 29 SSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFAS------LGS 82
+S + YG V SWK EE L++S+ A K +RGGIP+ FP F L
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 83 LESHGFARNRFW----SIDTDPPAFPTNSSSKAYIDLILRP---SEEDLKIWPHSFEFRL 135
L HG ARN W +PP + L+P + E K+WP + L
Sbjct: 79 LPQHGLARNSTWEFLGQTKENPPT----------VQFGLKPEIANPELTKLWPMDYLLIL 128
Query: 136 RVALTPGGDLMLIS-RVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQ 194
V L G D + + V NTS+ K F + +HTYF + DI V L + D L
Sbjct: 129 TVEL--GSDYLKTAIEVENTSS-SKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL 185
Query: 195 NKERFTEQGDAITFESEVDKIY--LSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDK 252
KE + ++ +TF E D IY +S I I+D + + +++ LPD VVWNPW +
Sbjct: 186 -KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIE 243
Query: 253 KAKAMADFGDDE-YKHMLCVEAAAVEKPITLKPGEEWKG 290
K++ MADF Y+ M+C+E V I+L PG++W
Sbjct: 244 KSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA 282
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/279 (33%), Positives = 134/279 (48%), Gaps = 33/279 (11%)
Query: 29 SSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFAS------LGS 82
+S + YG V SWK EE L++S+ A K +RGGIP+ FP F L
Sbjct: 20 TSVHILKYGATVYSWKLK-SEEQLWLSTAAKLDGSKPVRGGIPLVFPVFGKNSTDEHLSK 78
Query: 83 LESHGFARNRFW----SIDTDPPAFPTNSSSKAYIDLILRP---SEEDLKIWPHSFEFRL 135
L HG ARN W +PP + L+P + E K+WP + L
Sbjct: 79 LPQHGLARNSTWEFLGQTKENPPT----------VQFGLKPEIANPELTKLWPMDYLLIL 128
Query: 136 RVALTPGGDLMLIS-RVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDNLQ 194
V L G D + + V NTS+ K F + +HTYF + DI V L + D L
Sbjct: 129 TVEL--GSDYLKTAIEVENTSS-SKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLL 185
Query: 195 NKERFTEQGDAITFESEVDKIY--LSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDK 252
KE + ++ +TF E D IY +S I I+D + + +++ LPD VVWNPW +
Sbjct: 186 -KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVWNPWIE 243
Query: 253 KAKAMADFGDDE-YKHMLCVEAAAVEKPITLKPGEEWKG 290
K++ MADF Y+ M+C+E V I+L PG++W
Sbjct: 244 KSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA 282
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 127/278 (45%), Gaps = 17/278 (6%)
Query: 4 EKFLPVEFCKGNNGLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPP 63
E+ PV + + LD +V+ + A L G H+ SWK EE+L++S+ FK
Sbjct: 27 EQLTPVLSRRQLDDLDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTG 85
Query: 64 KAIRGGIPICFPQF--ASLGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSE 121
A+RGG+PIC+P F A+ L SHGFARN W++ + + L+ SE
Sbjct: 86 VALRGGVPICWPWFGPAAQQGLPSHGFARNLPWALKAH-----NEDDNGVMLTFELQSSE 140
Query: 122 EDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRV 181
K WPH F R + ++ L + F+ T A H+YF+V DI+ V+V
Sbjct: 141 ATRKYWPHDFTLLARFKVGKTCEIELEAH--------GEFATTSALHSYFNVGDIANVKV 192
Query: 182 EGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGL 241
GL ++D + + + TF D++YL+ I D RT +
Sbjct: 193 SGLGD-RFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHH 251
Query: 242 PDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAVEKP 279
+ V WNP + +M D DD YK +CVE P
Sbjct: 252 LNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 134/293 (45%), Gaps = 51/293 (17%)
Query: 15 NNGLDKVVLRESRGSSAEVYLYGGHVTSWK-NDHGEELLFVSSKATFKPPKAIRGGIPIC 73
+N + + L+ + G+ A++ L G + SWK + +++L++S FK AIRGG+PIC
Sbjct: 18 HNDIPVLHLKHAVGT-AKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPIC 76
Query: 74 FPQFASLGSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEF 133
+P F + +HG AR R W + S YI +
Sbjct: 77 YPWFGGVKQ-PAHGTARIRLWQL------------SHYYISV-----------------H 106
Query: 134 RLRVALTPGGDLMLI-SRVRNTSTDGKPFSFTF--------AYHTYFSVSDISEVRVEGL 184
++R+ DL +I ++V TD +FT A HTYF++ DI++V V+GL
Sbjct: 107 KVRLEFELFSDLNIIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGL 166
Query: 185 -ETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPD 243
ET ++L ++ I+ VD IY + + ILD RT +
Sbjct: 167 PETC--FNSLNQQQENVPSPRHIS--ENVDCIYSAENMQNQILDKSFNRTIALHHHNASQ 222
Query: 244 AVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAVEKPITLKPGEEWKGRLELSG 296
V+WNPW KK M++ G Y+ MLC+E A + L+ GE + L G
Sbjct: 223 FVLWNPWHKKTSGMSETG---YQKMLCLETARIHH--LLEFGESLSVEISLKG 270
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 72/167 (43%), Gaps = 22/167 (13%)
Query: 37 GGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFP--------QFASLGS---LES 85
GG VT W G+ +L+ + P ++RGGIPI FP QF G L+
Sbjct: 32 GGLVTEWTV-QGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYRLKQ 90
Query: 86 HGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDL 145
HGFAR+ W + + A +DL L ++ L+ +P +FE L G L
Sbjct: 91 HGFARDLPWEV------IGQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQ-GHSL 143
Query: 146 MLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEGLETLDYLDN 192
+ R+ N PFS F H YF + + + + DYLD
Sbjct: 144 RIEQRIANLGDQRXPFSLGF--HPYFFCREKLGITL-AIPANDYLDQ 187
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 26/107 (24%)
Query: 46 DHGEELLFVSSKATFKP------PKAIRGGIPICFPQFASLGS-----------LESHGF 88
DHG E+ V S T + P+ P+ FP L + L HGF
Sbjct: 16 DHGAEIQSVKSAHTDEEFXWQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQHGF 75
Query: 89 ARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRL 135
ARN F + +K I +L+ +EE K++P FEFR+
Sbjct: 76 ARN---------ADFEVENHTKESITFLLKDNEETRKVYPFKFEFRV 113
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 61/249 (24%)
Query: 86 HGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEED--LKIWPHSFEFRLRVALTPGG 143
HGF +N W++ KA ++++ ++E+ K + H F+F+L L+ G
Sbjct: 109 HGFIKNSKWTVHKKKI-----DQDKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSSKG 163
Query: 144 DLMLISRVRNTSTDGKPFSFTFAYHTYFSV-----SDISEVRVE------------GLET 186
L + V N S++ P S YH+ F+V S+ S RV+ L T
Sbjct: 164 -LKQTTSVVNLSSEEXPLSV--GYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPT 220
Query: 187 LDYLDNLQNKERFTEQGDAIT---FES--EVDKIYLSTPT-KIAILDHEKKRTFVIRKDG 240
+ ++ + E G A+ ES + I ++ T + A ++ K T V+ +
Sbjct: 221 GESFAPTGEQKEYLENGVAVASHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVYEXS 280
Query: 241 --LPDAVVWNPWDKKAKAMADFGDDEYKHMLCVE--AAAVEKP-----------ITLKPG 285
V+WN D GD +Y C+E + + P TLKP
Sbjct: 281 SEYKYLVIWN----------DXGDKKY---ACIEPQTSIINSPNVKLDRSVSGFKTLKPN 327
Query: 286 EEWKGRLEL 294
E W G +L
Sbjct: 328 ESWSGVCKL 336
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 32/136 (23%)
Query: 123 DLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHT------------- 169
+L++ P SF+ L + DL IS V T K F F+ Y+T
Sbjct: 82 ELELSPMSFDNVLASVQSGKADLA-ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA 140
Query: 170 -YFSVSDISEVRVEGL-----ETL--DYLDNL------QNKERFTE----QGDAITFESE 211
Y SV+D+++ +V ET+ D L N +N T+ Q DA+ FE
Sbjct: 141 TYQSVNDLAQKKVGAQKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEP 200
Query: 212 VDKIYLSTPTKIAILD 227
V K ++ +AI D
Sbjct: 201 VAKGFVENNPDLAIAD 216
>pdb|2PLJ|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLJ|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Putrescine From Vibrio Vulnificus
pdb|2PLK|A Chain A, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
pdb|2PLK|B Chain B, Crystal Structure Of LysineORNITHINE DECARBOXYLASE
COMPLEXED WITH Cadaverine From Vibrio Vulnificus
Length = 419
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 124 LKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDISEVRVEG 183
LK PH R +A DL V +++G P T H +DI + G
Sbjct: 85 LKPLPHPVVVRTLLAEGASFDLATTGEVELVASEGVPADLTIHTHPIKRDADIRDALAYG 144
Query: 184 LETLDYLDNLQNKERFTEQGDAI 206
+DNL E+F D +
Sbjct: 145 CNVF-VVDNLNELEKFKAYRDDV 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,106,606
Number of Sequences: 62578
Number of extensions: 426489
Number of successful extensions: 981
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 955
Number of HSP's gapped (non-prelim): 13
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)