Query 036760
Match_columns 315
No_of_seqs 206 out of 1252
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 3.3E-67 7.1E-72 452.7 30.2 294 7-305 12-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 1.1E-59 2.5E-64 427.7 31.3 265 21-295 2-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 2.3E-49 5.1E-54 348.1 23.4 262 15-297 21-285 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 2.4E-46 5.2E-51 340.8 25.3 247 19-294 2-270 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 1.1E-41 2.3E-46 312.9 26.6 244 21-296 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 3.1E-39 6.6E-44 294.5 23.8 228 32-295 4-273 (273)
7 PRK15172 putative aldose-1-epi 100.0 4E-37 8.7E-42 283.9 29.3 247 17-297 9-298 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 1.6E-36 3.5E-41 276.9 25.2 238 30-292 2-283 (284)
9 cd09022 Aldose_epim_Ec_YihR Al 100.0 2.4E-35 5.2E-40 270.3 25.9 236 29-294 1-284 (284)
10 PF01263 Aldose_epim: Aldose 1 100.0 2.4E-36 5.3E-41 278.4 18.8 253 19-295 1-300 (300)
11 cd09019 galactose_mutarotase_l 100.0 1.7E-34 3.8E-39 269.5 26.0 257 21-296 2-326 (326)
12 COG2017 GalM Galactose mutarot 100.0 2.7E-33 5.9E-38 258.9 27.2 254 15-298 9-307 (308)
13 PLN00194 aldose 1-epimerase; P 100.0 1.7E-31 3.7E-36 249.9 28.6 266 16-297 7-336 (337)
14 TIGR02636 galM_Leloir galactos 100.0 8.8E-32 1.9E-36 251.8 25.8 262 17-297 3-335 (335)
15 PRK11055 galM galactose-1-epim 100.0 1.9E-30 4.2E-35 242.7 27.4 262 16-297 7-340 (342)
16 PTZ00485 aldolase 1-epimerase; 100.0 3.5E-29 7.6E-34 235.3 29.0 277 8-305 4-375 (376)
17 KOG1604 Predicted mutarotase [ 99.9 2.8E-23 6.1E-28 186.8 24.2 270 11-299 13-352 (353)
18 cd09023 Aldose_epim_Ec_c4013 A 99.8 1.6E-19 3.5E-24 165.5 16.7 238 32-292 3-283 (284)
19 PF14486 DUF4432: Domain of un 99.3 6.1E-11 1.3E-15 109.4 17.6 251 16-296 2-302 (302)
20 cd09269 deoxyribose_mutarotase 99.2 3.5E-10 7.6E-15 103.8 13.9 189 82-293 61-291 (293)
21 PF14315 DUF4380: Domain of un 97.7 0.037 8.1E-07 50.5 27.0 127 18-165 4-144 (274)
22 TIGR03593 yidC_nterm membrane 91.9 3.4 7.4E-05 39.2 12.7 119 18-162 73-203 (366)
23 PF14849 YidC_periplas: YidC p 91.5 2.9 6.4E-05 37.6 11.3 121 20-163 1-131 (270)
24 PRK01318 membrane protein inse 89.4 10 0.00022 37.9 13.9 121 20-163 40-170 (521)
25 PF09095 DUF1926: Domain of un 85.5 11 0.00023 34.5 10.7 130 14-163 3-176 (278)
26 COG0832 UreB Urea amidohydrola 59.4 13 0.00028 28.3 3.3 31 136-171 12-42 (106)
27 PF05506 DUF756: Domain of unk 57.5 31 0.00068 25.4 5.3 40 127-171 5-44 (89)
28 cd00407 Urease_beta Urease bet 55.5 18 0.0004 27.6 3.6 30 137-171 13-42 (101)
29 PRK13203 ureB urease subunit b 55.5 18 0.0004 27.7 3.6 30 137-171 13-42 (102)
30 PF00699 Urease_beta: Urease b 55.4 19 0.00041 27.5 3.7 31 137-172 12-42 (100)
31 TIGR00192 urease_beta urease, 55.2 19 0.00042 27.5 3.7 30 137-171 13-42 (101)
32 PF02929 Bgal_small_N: Beta ga 52.9 1.2E+02 0.0025 27.6 9.3 116 22-154 1-121 (276)
33 PRK13201 ureB urease subunit b 47.8 27 0.00059 28.1 3.6 30 137-171 13-42 (136)
34 PRK13202 ureB urease subunit b 47.5 31 0.00067 26.5 3.7 30 137-171 13-43 (104)
35 PRK13205 ureB urease subunit b 46.0 29 0.00063 28.5 3.6 30 137-171 13-42 (162)
36 PRK13198 ureB urease subunit b 45.2 30 0.00066 28.5 3.6 42 125-171 28-70 (158)
37 PRK13204 ureB urease subunit b 45.1 31 0.00067 28.5 3.6 41 126-171 24-65 (159)
38 PRK05089 cytochrome C oxidase 33.5 3E+02 0.0065 23.7 8.1 53 110-166 62-115 (188)
39 PRK13192 bifunctional urease s 32.6 55 0.0012 28.4 3.4 40 127-171 111-151 (208)
40 PF06045 Rhamnogal_lyase: Rham 32.5 3.4E+02 0.0073 23.7 14.0 44 5-53 5-49 (203)
41 PF04744 Monooxygenase_B: Mono 30.7 77 0.0017 30.1 4.3 29 133-164 254-282 (381)
42 PRK13986 urease subunit alpha; 29.2 64 0.0014 28.3 3.3 30 137-171 118-147 (225)
43 PF12690 BsuPI: Intracellular 28.4 82 0.0018 23.0 3.4 19 144-164 1-19 (82)
44 cd06535 CIDE_N_CAD CIDE_N doma 26.6 20 0.00044 26.0 -0.1 22 267-290 56-77 (77)
45 PF10633 NPCBM_assoc: NPCBM-as 26.4 1E+02 0.0022 21.9 3.5 17 281-297 45-61 (78)
46 TIGR03079 CH4_NH3mon_ox_B meth 25.2 94 0.002 29.5 3.9 28 134-164 274-301 (399)
47 PF14310 Fn3-like: Fibronectin 23.1 1E+02 0.0023 21.5 3.1 22 279-300 26-47 (71)
48 PF14796 AP3B1_C: Clathrin-ada 22.7 3.2E+02 0.0068 22.5 6.1 20 280-299 124-143 (145)
49 cd01615 CIDE_N CIDE_N domain, 22.2 28 0.00061 25.4 -0.1 21 267-289 57-77 (78)
50 cd06536 CIDE_N_ICAD CIDE_N dom 21.2 28 0.0006 25.6 -0.3 21 267-289 59-79 (80)
51 PTZ00128 cytochrome c oxidase 20.9 6E+02 0.013 22.6 8.1 54 110-167 106-160 (232)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-67 Score=452.70 Aligned_cols=294 Identities=76% Similarity=1.307 Sum_probs=278.1
Q ss_pred cceEEEecCCCceEEEEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCCCCCCc
Q 036760 7 LPVEFCKGNNGLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLGSLESH 86 (315)
Q Consensus 7 ~~~~~~~~~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~~~~~H 86 (315)
-++++.++.+|++.|.|+++++.+|+|.++||+|+||+..+|+|+||.+..+.+++.+|||||+|+|||+||..+.+++|
T Consensus 12 ~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qH 91 (305)
T KOG1594|consen 12 MPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQFGNFGSLPQH 91 (305)
T ss_pred ccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeeccCCCCccccc
Confidence 34788899999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred eeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeee
Q 036760 87 GFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFA 166 (315)
Q Consensus 87 Gf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g 166 (315)
||||++.|.++......+ .-+.+.|.|.|.+++++.+.|||+|++++++.|.+ +.|+++.+|+|+ +++|+.|+++
T Consensus 92 GFaRn~~W~v~~~p~~lp--~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~-g~Lt~~~rV~Nt--d~KpFsF~~a 166 (305)
T KOG1594|consen 92 GFARNRFWEVENNPPPLP--SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGD-GELTLTSRVRNT--DSKPFSFSFA 166 (305)
T ss_pred ccccceeeEeccCCCCCC--cCCceeEEEEecCChhhhhhCCcceEEEEEEEEcC-CceEEEEEeecC--CCCceEEEeE
Confidence 999999999998764333 22457899999999999999999999999999997 899999999999 9999999999
Q ss_pred ccceeecCCcceeEEEcCCCCceeecCCccceeeecCCeeecCCCcceEEeCCCCeEEEEeCCCCcEEEEEeCCCCcEEE
Q 036760 167 YHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVV 246 (315)
Q Consensus 167 ~HpYF~~~~~~~~~i~gl~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~v~~~~~~~~vv 246 (315)
+|+||.++++.+++++|+++..|+|++....++.++.+.++|++++|++|++.+.+..|.|...+++|.|..+|+|+.||
T Consensus 167 lHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~g~pDaVV 246 (305)
T KOG1594|consen 167 LHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKEGLPDAVV 246 (305)
T ss_pred eeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEEeccCCCceEE
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred eCCccchhccccCCCCCCCCceEEEceeeecCceEeCCCCEEEEEEEEEEeecCCCCCC
Q 036760 247 WNPWDKKAKAMADFGDDEYKHMLCVEAAAVEKPITLKPGEEWKGRLELSGVPSSYCSGQ 305 (315)
Q Consensus 247 w~p~~~~~~~~~d~~~~~~~~fvCvEP~~~~~~~~L~PGe~~~~~~~i~~~~~~~~~~~ 305 (315)
||||.++++.|+||++++|++|+|||+..++.+++|+||++|++++.+.+.++++||+|
T Consensus 247 WNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 247 WNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred eChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=1.1e-59 Score=427.68 Aligned_cols=265 Identities=49% Similarity=0.835 Sum_probs=239.9
Q ss_pred EEEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCC---CCCCceeeecCCcEEe
Q 036760 21 VVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG---SLESHGFARNRFWSID 97 (315)
Q Consensus 21 ~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~---~~~~HGf~r~~~W~v~ 97 (315)
++|+|+ +++|+|.++||+|+||+.++++++||.++.+.|+..+++|||+|+|||||||+. ++++|||||++.|+|+
T Consensus 2 i~i~~~-~~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHP-GASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCC-CceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 679999 699999999999999998656999999999999999999999999999999986 6899999999999998
Q ss_pred ccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeeccceeecCCcc
Q 036760 98 TDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDIS 177 (315)
Q Consensus 98 ~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF~~~~~~ 177 (315)
+... +++..+++|.+.+++.++++|||+|+++++|+|.+ ++|+++++|+|+ ++++|||++|+||||+++++.
T Consensus 81 ~~~~-----~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~-~~L~~~l~v~N~--g~~~~p~~~g~HpYf~v~d~~ 152 (269)
T cd09020 81 EVSE-----DEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGF-DTLELELTVTNT--GDKPFSFTAALHTYFRVSDIE 152 (269)
T ss_pred eeec-----CCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcC-CcEEEEEEEECC--CCCCeEehhccCeeEecCCcc
Confidence 7642 23457889999888888899999999999999998 899999999999 999999999999999999999
Q ss_pred eeEEEcCCCCceeecCCccceeeecCCeeecCCCcceEEeCCCCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhccc
Q 036760 178 EVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAM 257 (315)
Q Consensus 178 ~~~i~gl~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~ 257 (315)
+++|.|+++..|+|++..... ..+.+.+.+.+++|++|.+.++.++|.|+..++.|+|..++++++||||||.+++++|
T Consensus 153 ~~~v~gl~~~~y~d~~~~~~~-~~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~ 231 (269)
T cd09020 153 QVRVEGLEGATYLDKLTDQRE-KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARM 231 (269)
T ss_pred ccEEeCCCCCceEEcCCCccc-cccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhcccc
Confidence 999999999899997754322 2234678888999999998888899999988999999999999999999999999999
Q ss_pred cCCCCCCCCceEEEceeeecCceEeCCCCEEEEEEEEE
Q 036760 258 ADFGDDEYKHMLCVEAAAVEKPITLKPGEEWKGRLELS 295 (315)
Q Consensus 258 ~d~~~~~~~~fvCvEP~~~~~~~~L~PGe~~~~~~~i~ 295 (315)
+||++++|++||||||++..++++|+|||+|+++++|+
T Consensus 232 ~d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 232 ADFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred ccCCccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 99999999999999999988899999999999999874
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-49 Score=348.06 Aligned_cols=262 Identities=37% Similarity=0.576 Sum_probs=222.4
Q ss_pred CCCceEEEEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCCC--CCCceeeecC
Q 036760 15 NNGLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLGS--LESHGFARNR 92 (315)
Q Consensus 15 ~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~~--~~~HGf~r~~ 92 (315)
++..+.+.+.+. -.+|.|+.+||+|.||++++++|+||.++.+.|+.+++||||+||||||||+... +|.|||||++
T Consensus 21 ~~~~~~~~~~h~-~~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~ 99 (287)
T COG0676 21 LDQLPLIVVDHP-LGSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNR 99 (287)
T ss_pred eeccCceEeecc-cceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcC
Confidence 666889999999 4999999999999999997678999999999999999999999999999999975 6999999999
Q ss_pred CcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeeccceee
Q 036760 93 FWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFS 172 (315)
Q Consensus 93 ~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF~ 172 (315)
+|++.+... +++...++|.|..+.. |+.|.++++++|.+ .|+++++..|. .+ |+.++||||+
T Consensus 100 ~W~l~~~~~-----~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g~--~le~~l~~~~~--~s----~~~AlHtYF~ 161 (287)
T COG0676 100 PWKLLEHDE-----DEDGVRVTFGLDLEDE-----PHDFTLRLTFRFGE--TLELELESYGE--ES----FQAALHTYFR 161 (287)
T ss_pred ceeeeehhc-----ccCceEEEEEeCCCcc-----ccceEEEEEeeccc--eEEEEEEecCh--hH----HHHhhcceEE
Confidence 999998863 4556788888886442 99999999999984 68888887766 44 9999999999
Q ss_pred cCCcceeEEEcCCCCceeecCCccceeeecCCeeecCCCcceEEeCCCCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccc
Q 036760 173 VSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDK 252 (315)
Q Consensus 173 ~~~~~~~~i~gl~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~ 252 (315)
+++++++.++|+++..+.+ ....+....+.+...|+++.|++|++.+....|.|+...|+|+|+..+.+.+|+||||.+
T Consensus 162 VgDi~qv~V~GL~~~~~~~-~~~~~~~v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~ 240 (287)
T COG0676 162 VGDIEQVEVSGLGGVCIDK-VLNAEEEVTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHA 240 (287)
T ss_pred ecchhheEeccCCceehhh-hhhceeeccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCcc
Confidence 9999999999998755444 322222122334478899999999998888999999889999999999999999999999
Q ss_pred hhccccCCCCCCCCceEEEceeeec-CceEeCCCCEEEEEEEEEEe
Q 036760 253 KAKAMADFGDDEYKHMLCVEAAAVE-KPITLKPGEEWKGRLELSGV 297 (315)
Q Consensus 253 ~~~~~~d~~~~~~~~fvCvEP~~~~-~~~~L~PGe~~~~~~~i~~~ 297 (315)
++..|+||.+++|+.|+||||..+. ....++|+ ..+..++|.+.
T Consensus 241 ~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~~ 285 (287)
T COG0676 241 KSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISVA 285 (287)
T ss_pred ccccccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeecc
Confidence 9999999999999999999999875 45677777 66676666654
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.4e-46 Score=340.83 Aligned_cols=247 Identities=29% Similarity=0.525 Sum_probs=205.7
Q ss_pred eEEEEecCC-CcEEEEE-cCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCC-----------CCCC
Q 036760 19 DKVVLRESR-GSSAEVY-LYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG-----------SLES 85 (315)
Q Consensus 19 ~~~~L~n~~-~~~a~I~-~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~-----------~~~~ 85 (315)
+.++|+++. +++++|. .+||+|+||+. +|+++||+++.+.++..+++|||+|+||||+||+. ++++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~ 80 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQ 80 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccC
Confidence 578899984 5888776 89999999997 57899999998888888899999999999999985 4789
Q ss_pred ceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEee
Q 036760 86 HGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTF 165 (315)
Q Consensus 86 HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~ 165 (315)
|||+|++.|+|++.. +...++|++.+.++.+.+|||+|+++++|+|.+ ++|+++++|+|+ ++++|||++
T Consensus 81 HGf~r~~~W~v~~~~--------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~ 149 (271)
T cd09025 81 HGFARDLPWEVELLG--------DGAGLTLTLRDNEATRAVYPFDFELELTYRLAG-NTLEIAQRVHNL--GDQPMPFSF 149 (271)
T ss_pred cccccCCCEEEEecC--------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeC-CEEEEEEEEEEC--CCCcEEEEE
Confidence 999999999998652 245788999877767889999999999999997 999999999999 999999999
Q ss_pred eccceeecCCcceeEEEcCCCCceeecCCccceeeecCCeeecCCCcceEEeCCCCeEEEEeCCCCcEEEEEeC-CCCcE
Q 036760 166 AYHTYFSVSDISEVRVEGLETLDYLDNLQNKERFTEQGDAITFESEVDKIYLSTPTKIAILDHEKKRTFVIRKD-GLPDA 244 (315)
Q Consensus 166 g~HpYF~~~~~~~~~i~gl~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~v~~~-~~~~~ 244 (315)
|+||||++++.+++.+.++. ..++|+..++.. ........+..++|++|.+++ .++|.+++.+++|.|..+ +++++
T Consensus 150 g~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~ 226 (271)
T cd09025 150 GFHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEA-NTPGQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNL 226 (271)
T ss_pred ecCceeeCCchhccEEEcCH-HHHhhhccCCcc-CCcccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceE
Confidence 99999999988888888763 556654433211 111223344568999998775 789999887899999987 48999
Q ss_pred EEeCCccchhccccCCCCCCCCceEEEceeee--------cCceEeCCCCEEEEEEEE
Q 036760 245 VVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV--------EKPITLKPGEEWKGRLEL 294 (315)
Q Consensus 245 vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~--------~~~~~L~PGe~~~~~~~i 294 (315)
|||||. ++.|||||||+. .++++|+|||+++++++|
T Consensus 227 vvw~p~--------------~~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i 270 (271)
T cd09025 227 VVWTDK--------------GKDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRI 270 (271)
T ss_pred EEecCC--------------CCcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEE
Confidence 999984 257999999962 467999999999999887
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.1e-41 Score=312.90 Aligned_cols=244 Identities=21% Similarity=0.347 Sum_probs=187.8
Q ss_pred EEEecCCCcEEEEEcCCeEEEEEEeC-CCeeEEEeCCCCCCCCCCCccccccEEccccCCCC-----------CCCCcee
Q 036760 21 VVLRESRGSSAEVYLYGGHVTSWKND-HGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG-----------SLESHGF 88 (315)
Q Consensus 21 ~~L~n~~~~~a~I~~~Ga~l~s~~~~-~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~-----------~~~~HGf 88 (315)
++|+|+. ++|+|..+||+|+||+.+ +|+|+||..+.++|. +++|+||||+||+. ++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4799995 999999999999999984 589999998876664 56899999999985 5789999
Q ss_pred eecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecc
Q 036760 89 ARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYH 168 (315)
Q Consensus 89 ~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~H 168 (315)
+|++.|+|.+.. ..+++|++.++++...+|||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+|
T Consensus 74 ~r~~~w~v~~~~---------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~H 141 (288)
T cd09024 74 ARDMEFEVVEQS---------DDSVTFELTDNEETLKVYPFDFELRVTYTLEG-NTLKVTYEVKNP--DDKTMPFSIGGH 141 (288)
T ss_pred cccCceEEEEcc---------CCEEEEEEccCcchhhcCCeEEEEEEEEEEeC-CEEEEEEEEEcC--CCCceEEEEeCC
Confidence 999999998763 35788999877767789999999999999997 999999999999 999999999999
Q ss_pred ceeecCCcc-----eeE--EEcCC-CCcee-e--c-CCccce-eeecCCeeecCCC-c-ceE--EeCCC-CeEEEEeCCC
Q 036760 169 TYFSVSDIS-----EVR--VEGLE-TLDYL-D--N-LQNKER-FTEQGDAITFESE-V-DKI--YLSTP-TKIAILDHEK 230 (315)
Q Consensus 169 pYF~~~~~~-----~~~--i~gl~-~~~~~-d--~-l~~~~~-~~~~~~~~~~~~~-~-D~~--y~~~~-~~~~l~d~~~ 230 (315)
|||++++.. +.. +...+ ...+. + . ++.+.. .......+.+... + |+. |.++. +.++|.+++.
T Consensus 142 pYF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 221 (288)
T cd09024 142 PAFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKT 221 (288)
T ss_pred ceEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCC
Confidence 999998642 433 43211 12221 2 1 232211 1111223344332 2 343 34443 5789988877
Q ss_pred CcEEEEEeCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee--------------cCceEeCCCCEEEEEEEEEE
Q 036760 231 KRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV--------------EKPITLKPGEEWKGRLELSG 296 (315)
Q Consensus 231 ~~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~--------------~~~~~L~PGe~~~~~~~i~~ 296 (315)
++.|+|..+++++++||+|... ++|||||||++ .++++|+|||+++.+++|++
T Consensus 222 ~~~v~l~~~~~~~l~vwt~~~~-------------~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 222 GHGVTVDFDDFPYLGIWSKPNG-------------APFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred CCEEEEEeCCCCEEEEeCCCCC-------------CCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 8899999888999999998521 47999999983 25799999999999999875
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=3.1e-39 Score=294.51 Aligned_cols=228 Identities=18% Similarity=0.268 Sum_probs=177.4
Q ss_pred EEEcCCeEEEEEEeCC-CeeEEEeCCCCCCCCCCCccccccEEccccCCCC--------------------CCCCceeee
Q 036760 32 EVYLYGGHVTSWKNDH-GEELLFVSSKATFKPPKAIRGGIPICFPQFASLG--------------------SLESHGFAR 90 (315)
Q Consensus 32 ~I~~~Ga~l~s~~~~~-g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~--------------------~~~~HGf~r 90 (315)
.|...||.|+||+..+ |.++||..+.+.. .+.++|+|+||||+||+. .+++|||+|
T Consensus 4 ~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ar 80 (273)
T cd09021 4 LAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGDGW 80 (273)
T ss_pred eCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccchh
Confidence 3468999999999843 5899998766542 234688999999999994 237999999
Q ss_pred cCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeeccce
Q 036760 91 NRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTY 170 (315)
Q Consensus 91 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpY 170 (315)
++.|+|+... .+.++|++...+.. +||+|+++++|+|.+ ++|+++++++|+ ++++|||++|+|||
T Consensus 81 ~~~w~v~~~~---------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~-~~L~i~~~~~N~--~~~~~~~~~g~H~Y 145 (273)
T cd09021 81 RRPWQVVAAS---------ADSAELQLDHEADD---PPWAYRAEQRFHLAG-DGLSITLSVTNR--GDRPMPAGLGFHPY 145 (273)
T ss_pred cCceEEEecc---------CCeEEEEEecCCCC---CCEeEEEEEEEEEcC-CCEEEEEEEEEC--CCCCceeeeecCcc
Confidence 9999998763 23577777654432 499999999999997 899999999999 99999999999999
Q ss_pred eecCCcceeEEEcCCCCcee---ecCCccceeeecCCeeec-------CCCcceEEeCCCCeEEEEeCCCCcEEEEEeCC
Q 036760 171 FSVSDISEVRVEGLETLDYL---DNLQNKERFTEQGDAITF-------ESEVDKIYLSTPTKIAILDHEKKRTFVIRKDG 240 (315)
Q Consensus 171 F~~~~~~~~~i~gl~~~~~~---d~l~~~~~~~~~~~~~~~-------~~~~D~~y~~~~~~~~l~d~~~~~~i~v~~~~ 240 (315)
|++++...+++.+.. .+. +.++++..... ..++| ..++|++|......+.+.++.+++.|+|.+++
T Consensus 146 F~~~~~~~l~v~~~~--~~~~d~~~lp~~~~~~~--~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~ 221 (273)
T cd09021 146 FPRTPDTRLQADADG--VWLEDEDHLPTGLRPHP--PDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADA 221 (273)
T ss_pred EecCCCCEEEEecce--EEecCCCcCCCcccCCC--cchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCC
Confidence 999987778877532 222 45554432111 11222 24799999866566888888889999999997
Q ss_pred -CCcEEEeCCccchhccccCCCCCCCCceEEEceeee----------cCceEeCCCCEEEEEEEEE
Q 036760 241 -LPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV----------EKPITLKPGEEWKGRLELS 295 (315)
Q Consensus 241 -~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~----------~~~~~L~PGe~~~~~~~i~ 295 (315)
++++|||||+. +.|||||||++ .+.++|+|||+++.+++|+
T Consensus 222 ~~~~~vvwtp~~--------------~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 222 PFSHLVVYRPPG--------------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred CCCEEEEEcCCC--------------CCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 99999999962 57999999972 2358999999999998874
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=4e-37 Score=283.86 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=187.6
Q ss_pred CceEEEEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCC---------------
Q 036760 17 GLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG--------------- 81 (315)
Q Consensus 17 ~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~--------------- 81 (315)
.-.+++|+|+. ++|+|..+||.|.+|+. +|+++++..+.+.+. ...+ .++|+||+|||.
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~-~~~~vv~~~~~~~~~---~~~~-g~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTF-QGRHLVIPHKPEEMP---LAHL-GKVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEE-CCEEEEecCCccccC---cccc-ccEecccCCeecCCEEEECCEEEECCC
Confidence 45689999995 99999999999999998 467887655544442 2223 378999999994
Q ss_pred -----CCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCC
Q 036760 82 -----SLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTST 156 (315)
Q Consensus 82 -----~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~ 156 (315)
.+++||+++.+.|+|.... .++++|++.+.+ ..+|||+|+++++|+|+++++|+++++++|+
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~---------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~-- 149 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT---------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNI-- 149 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec---------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEEC--
Confidence 1349999999999998653 235777776543 3689999999999999854799999999999
Q ss_pred CCccEEEeeeccceeecCC--cceeEEEcCCCCcee----ecCCccceeeecCCeeecCC-------CcceEEeCCCC--
Q 036760 157 DGKPFSFTFAYHTYFSVSD--ISEVRVEGLETLDYL----DNLQNKERFTEQGDAITFES-------EVDKIYLSTPT-- 221 (315)
Q Consensus 157 ~~~~~p~~~g~HpYF~~~~--~~~~~i~gl~~~~~~----d~l~~~~~~~~~~~~~~~~~-------~~D~~y~~~~~-- 221 (315)
++++|||++|+||||+++. +.+.++... ...++ +.+|++. ....+..++|.. ++|++|..+..
T Consensus 150 ~~~~~P~~~g~HpYFnl~~~~~~~~~L~~~-a~~~~~~d~~~iPtg~-~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~ 227 (300)
T PRK15172 150 GDVPAPYGVGIHPYLTCNLTSVDEYLLQLP-ANQVLAVDEHANPTTL-HHVDELDLDFSQAKKIAATKIDHTFKTANDLW 227 (300)
T ss_pred CCCceeeEEecCceEecCCCChhceEEEEe-CCeEEecCCCcCCCcc-ccCCCCCcCCCCCeECCCCCccCEEEcCCCce
Confidence 9999999999999999973 445444422 23333 2466652 222223344432 59999987654
Q ss_pred eEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee--------cCceEeCCCCEEEEEEE
Q 036760 222 KIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV--------EKPITLKPGEEWKGRLE 293 (315)
Q Consensus 222 ~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~--------~~~~~L~PGe~~~~~~~ 293 (315)
.++|.++.++++|++.++ .+.+|||+|... .+.+||||||+. .+.++|+|||+++.+++
T Consensus 228 ~~~l~~~~~g~~l~~~~~-~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~~ 294 (300)
T PRK15172 228 EVRITHPQQALSVSLCSD-QPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFFN 294 (300)
T ss_pred EEEEEeCCCCeEEEEEcC-CCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEEE
Confidence 789999999999999987 799999998421 147999999984 25799999999999988
Q ss_pred EEEe
Q 036760 294 LSGV 297 (315)
Q Consensus 294 i~~~ 297 (315)
|+..
T Consensus 295 i~~~ 298 (300)
T PRK15172 295 IGGQ 298 (300)
T ss_pred EEEE
Confidence 8764
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.6e-36 Score=276.91 Aligned_cols=238 Identities=21% Similarity=0.275 Sum_probs=180.5
Q ss_pred EEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCC------------------CCCCceeeec
Q 036760 30 SAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG------------------SLESHGFARN 91 (315)
Q Consensus 30 ~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~------------------~~~~HGf~r~ 91 (315)
+|+|..+||.|.+|+.++++++||..+........+.++|.|+||||+||+. .+++||++|.
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 6789999999999998544899998877544334567789999999999983 4689999999
Q ss_pred CCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 92 RFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 92 ~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
++|+++... ++.+.++|++...+... +|||+|+++++|+|.+ ++|+|+++|+|+ ++++|||++|+||||
T Consensus 82 ~~w~v~~~~-------~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~-~~L~i~~~v~N~--~~~~~p~~~g~HpyF 150 (284)
T cd01081 82 LPWRVVATD-------EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDA-DTLTITFTVTNL--GDEPMPFGLGWHPYF 150 (284)
T ss_pred CcEEEEEec-------cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeC-CeEEEEEEEEeC--CCCCcceeeecCceE
Confidence 999998763 12456788887655444 8999999999999998 999999999999 999999999999999
Q ss_pred ecCCc--ceeEEEcCCCCcee--e--cCCccceeee----cCCeeec-CCCcceEEeCCC-----CeEEEEeCCCCcEEE
Q 036760 172 SVSDI--SEVRVEGLETLDYL--D--NLQNKERFTE----QGDAITF-ESEVDKIYLSTP-----TKIAILDHEKKRTFV 235 (315)
Q Consensus 172 ~~~~~--~~~~i~gl~~~~~~--d--~l~~~~~~~~----~~~~~~~-~~~~D~~y~~~~-----~~~~l~d~~~~~~i~ 235 (315)
+++.. .++++.... ..+. + .++++..... ......+ ...+|++|.... ..+.|.++.+++.|+
T Consensus 151 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~ 229 (284)
T cd01081 151 GLPGVAIEDLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVE 229 (284)
T ss_pred ecCCCcccceEEEecC-CEEEecCCccCCCCccCCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEE
Confidence 99874 566665433 2333 2 2333221110 0111222 347899986442 378899988889999
Q ss_pred EEeCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee---------cCceEeC-CCCEEEEEE
Q 036760 236 IRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV---------EKPITLK-PGEEWKGRL 292 (315)
Q Consensus 236 v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~---------~~~~~L~-PGe~~~~~~ 292 (315)
+.++. |.++||+|.. +.++|||||||+. .+.++|+ |||+++.++
T Consensus 230 ~~~~~-~~~~v~t~~~------------~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 230 FETGW-PFWQVYTGDG------------GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EeCCC-CEEEEECCCC------------CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 99885 9999999852 1157999999984 1469999 999987664
No 9
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=2.4e-35 Score=270.33 Aligned_cols=236 Identities=19% Similarity=0.275 Sum_probs=173.6
Q ss_pred cEEEEEcCCeEEEEEEeCCCeeEEEeCCCCCCCCCCCccccccEEccccCCCC-----------CCC---------Ccee
Q 036760 29 SSAEVYLYGGHVTSWKNDHGEELLFVSSKATFKPPKAIRGGIPICFPQFASLG-----------SLE---------SHGF 88 (315)
Q Consensus 29 ~~a~I~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~-----------~~~---------~HGf 88 (315)
++|+|..+||.|++|+. +|+++||..+.... .... .| |+||||+||+. +++ +||+
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~--~~~~-~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEV--PPGA-AG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccC--Cccc-cc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 36889999999999998 67899986665432 1122 33 79999999994 233 9999
Q ss_pred eecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecc
Q 036760 89 ARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYH 168 (315)
Q Consensus 89 ~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~H 168 (315)
+|.+.|+++... .+.++|.+.+. ...+|||+|+++++|+|.+ ++|+++++|+|+ ++++|||++|+|
T Consensus 76 ~~~~~w~v~~~~---------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~~-~~L~i~~~v~N~--~~~~~p~~~g~H 141 (284)
T cd09022 76 VRWADWQLVEHT---------DSSVTLRTRIP--PQPGYPFTLELTVTYELDD-DGLTVTLTATNV--GDEPAPFGVGFH 141 (284)
T ss_pred eecceEEEeecc---------CCeEEEEEEeC--CccCCCceEEEEEEEEEcC-CcEEEEEEEEeC--CCCCeEeeeEec
Confidence 999999998763 24577777653 3578999999999999998 899999999999 999999999999
Q ss_pred ceeecCCc--ceeEEEcCCCCcee--e--cCCccceeeecCCeeecC-------CCcceEEeCCC------CeEEEEeCC
Q 036760 169 TYFSVSDI--SEVRVEGLETLDYL--D--NLQNKERFTEQGDAITFE-------SEVDKIYLSTP------TKIAILDHE 229 (315)
Q Consensus 169 pYF~~~~~--~~~~i~gl~~~~~~--d--~l~~~~~~~~~~~~~~~~-------~~~D~~y~~~~------~~~~l~d~~ 229 (315)
|||++++. .+.+|.-.. ..++ | .++++.. ...+..++|. .++|+.|.... ..++|.++.
T Consensus 142 pyF~l~~~~~~~~~L~~~a-~~~~~~d~~~lptg~~-~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~ 219 (284)
T cd09022 142 PYLSAGGAPLDECTLTLPA-DTWLPVDERLLPTGTE-PVAGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPD 219 (284)
T ss_pred ceEecCCCCcccEEEEEEC-ceEEecCCccCCCcCc-CCCCCCccCcCCccccCccccccccccccCCCCcEEEEEECCC
Confidence 99999853 555544212 2222 2 3555432 1122233442 26899986432 268888887
Q ss_pred CCcEEEEEeC-CCCcEEEeCCccchhccccCCCCCCCCceEEEceeee--------cCceEeCCCCEEEEEEEE
Q 036760 230 KKRTFVIRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV--------EKPITLKPGEEWKGRLEL 294 (315)
Q Consensus 230 ~~~~i~v~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~--------~~~~~L~PGe~~~~~~~i 294 (315)
+ +.|+|.++ ++|+++||+|..- +....++|||||||+. .+.++|+|||+++.+++|
T Consensus 220 ~-~~l~l~~~~~~~~~~vyt~~~~--------~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 220 G-RGVELWADESFPWVQVFTADTL--------PPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred C-CEEEEEECCCCCEEEEECCCCC--------CCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 6 89999985 6899999998421 0011257999999984 256899999999988875
No 10
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=2.4e-36 Score=278.40 Aligned_cols=253 Identities=25% Similarity=0.391 Sum_probs=172.6
Q ss_pred eEEEEecCCCcEEEEEcCCeEEEEEEeCC-CeeEEEeCCC--CCCCCCCCccccccEEccccCCC---------------
Q 036760 19 DKVVLRESRGSSAEVYLYGGHVTSWKNDH-GEELLFVSSK--ATFKPPKAIRGGIPICFPQFASL--------------- 80 (315)
Q Consensus 19 ~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~-g~evL~~~~~--~~~~~~~~irgG~pilfP~~gr~--------------- 80 (315)
++|+|+|+.+++|+|..+||+|.||+..+ ++++||..+. .++. .. .+.|+||||+||+
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~l~p~~~Ri~~g~~~~~g~~~~l~ 76 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWS-NS---FGGPILFPWPNRIRNGRFTFDGKPYCLP 76 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHH-ST---CTTCEECSCSSEEGGGEEEETTEEEEBS
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcc-cc---cceeeeecccceEECCEEEECCEEEEee
Confidence 47999998569999999999999999854 5999998887 2332 11 2236677777775
Q ss_pred ----CCCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCc-EEEEEEEEeCC
Q 036760 81 ----GSLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGD-LMLISRVRNTS 155 (315)
Q Consensus 81 ----~~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~-L~i~~~v~N~n 155 (315)
.++++|||+|++.|+|++.. + .++++|.+..+.++..+|||+|+++++|+|.+ ++ |+++++|+|.
T Consensus 77 ~~~~~~~~~HG~~~~~~w~v~~~~-------~-~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~-~~~L~i~~~v~n~- 146 (300)
T PF01263_consen 77 WNGPYPNPIHGFARNKPWEVEEQS-------E-DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDE-NGKLTITYEVTND- 146 (300)
T ss_dssp SSBTTTBEETBSGGGSB-EEEEEE-------E-TTEEEEEEEEEETTHHHSSSEEEEEEEEEEET-TEEEEEEEEEEES-
T ss_pred eccCCCcCCCCCcccccEEEEEec-------c-cceEEEEEEecCccceeeccceeeEEEEEECC-CCeEEEEEEEEec-
Confidence 25689999999999999884 1 24455555543344467999999999999998 88 9999999999
Q ss_pred CCCccEEEeeeccceeecC----CcceeEEEcCCCCceee-cCCccceeeecCC--------eeecCC-CcceEEeCCC-
Q 036760 156 TDGKPFSFTFAYHTYFSVS----DISEVRVEGLETLDYLD-NLQNKERFTEQGD--------AITFES-EVDKIYLSTP- 220 (315)
Q Consensus 156 ~~~~~~p~~~g~HpYF~~~----~~~~~~i~gl~~~~~~d-~l~~~~~~~~~~~--------~~~~~~-~~D~~y~~~~- 220 (315)
+ ++|||++|+||||+++ +...+.+.+.....+.+ .+|+++....... .+.... .+|++|....
T Consensus 147 -~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~~~~~ 224 (300)
T PF01263_consen 147 -G-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFVLDPP 224 (300)
T ss_dssp -S-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEEESSS
T ss_pred -C-ccEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeecccccccceEEEcCCC
Confidence 9 9999999999999999 45557776421111112 3454432221111 111122 5899998765
Q ss_pred CeEEEEeCCCCcEEEEEeC-CCCcEEEeCCccchhccccCCCCCCCCceEEEceee-------ec-CceEeCCCCEEEEE
Q 036760 221 TKIAILDHEKKRTFVIRKD-GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAA-------VE-KPITLKPGEEWKGR 291 (315)
Q Consensus 221 ~~~~l~d~~~~~~i~v~~~-~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~-------~~-~~~~L~PGe~~~~~ 291 (315)
...++.+...+++|.|... .+|.+|||+|+... +.+. ...+|+||++ .. +.++|+|||+++.+
T Consensus 225 ~~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~ 296 (300)
T PF01263_consen 225 GRPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYIC-------IEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFS 296 (300)
T ss_dssp SEEEEEEETTTEEEEEEEEESSSEEEEEEETTSS-TEET-------TCEEECEEESECECCCECCHEGEEEETTSEEEEE
T ss_pred ccEEEEeecccceEEEEecCCCCcEEEECCCCcc-cccC-------CcccccCCCeeecccccCCCCCEEECCCCEEEEE
Confidence 5555555556666666543 58999999996432 0011 1234444443 22 46999999999999
Q ss_pred EEEE
Q 036760 292 LELS 295 (315)
Q Consensus 292 ~~i~ 295 (315)
++|+
T Consensus 297 ~~~~ 300 (300)
T PF01263_consen 297 TRYT 300 (300)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9885
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=1.7e-34 Score=269.45 Aligned_cols=257 Identities=16% Similarity=0.263 Sum_probs=181.2
Q ss_pred EEEecCCCcEEEEEcCCeEEEEEEeC--CC--eeEEEeCC-CCCCCCCCCccccccEEccccCCCC-----------CC-
Q 036760 21 VVLRESRGSSAEVYLYGGHVTSWKND--HG--EELLFVSS-KATFKPPKAIRGGIPICFPQFASLG-----------SL- 83 (315)
Q Consensus 21 ~~L~n~~~~~a~I~~~Ga~l~s~~~~--~g--~evL~~~~-~~~~~~~~~irgG~pilfP~~gr~~-----------~~- 83 (315)
++|+|+++++|+|..+||.|.+|+.+ +| +++|+..+ .+.|....+..| +++.||+||+. ++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEEEEcc
Confidence 67999866999999999999999973 23 68988774 455654444444 56789999984 12
Q ss_pred ----------CCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEe
Q 036760 84 ----------ESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRN 153 (315)
Q Consensus 84 ----------~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N 153 (315)
..|||++ +.|++.... .++|+|++.+. +...+|||+|+++++|+|.++++|+++++++|
T Consensus 80 ~Ne~~~~LHGg~~G~~~-~~w~~~~~~---------~~~v~l~~~~~-~~~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~ 148 (326)
T cd09019 80 ANEGPNHLHGGPKGFDK-RVWDVEEVE---------ENSVTFSLVSP-DGEEGFPGNLTVTVTYTLTDDNELTIEYEATT 148 (326)
T ss_pred CCCCCcccCCCCccccC-cEEeEEecc---------CCEEEEEEECC-cccCCCCeEEEEEEEEEECCCCEEEEEEEEEe
Confidence 2366677 499998763 45788888876 45689999999999999996579999999875
Q ss_pred CCCCCccEEEeeeccceeecCC-----cceeEEEcCCCCcee----ecCCccceeeecCCeeec----------------
Q 036760 154 TSTDGKPFSFTFAYHTYFSVSD-----ISEVRVEGLETLDYL----DNLQNKERFTEQGDAITF---------------- 208 (315)
Q Consensus 154 ~n~~~~~~p~~~g~HpYF~~~~-----~~~~~i~gl~~~~~~----d~l~~~~~~~~~~~~~~~---------------- 208 (315)
+++|||++|+||||+++. +.+..|.- +...++ +.+|++......+..++|
T Consensus 149 ----~~~~p~~~g~HpyFnl~~~~~~~~~~~~L~~-~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~ 223 (326)
T cd09019 149 ----DKPTPVNLTNHSYFNLAGEGSGDILDHELQI-NADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQL 223 (326)
T ss_pred ----CCCeEecccceeeEecCCCCCCCccceEEEE-ecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhc
Confidence 489999999999999984 33444432 123333 246665432211111111
Q ss_pred --CCCcceEEe--CC----CCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee----
Q 036760 209 --ESEVDKIYL--ST----PTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV---- 276 (315)
Q Consensus 209 --~~~~D~~y~--~~----~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~---- 276 (315)
..++|++|. ++ ...++|.++.++++|+|.++ .|.+|||++.........+-.....+.+||||||+.
T Consensus 224 ~~~~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~ 302 (326)
T cd09019 224 KLGGGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAP 302 (326)
T ss_pred ccCCCcceEEEECCCCCccceeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcc
Confidence 237999996 33 23688999999999999886 899999998432110000000012367899999973
Q ss_pred ----cCceEeCCCCEEEEEEEEEE
Q 036760 277 ----EKPITLKPGEEWKGRLELSG 296 (315)
Q Consensus 277 ----~~~~~L~PGe~~~~~~~i~~ 296 (315)
.+.++|+|||+++..++|+|
T Consensus 303 n~~~~g~~~L~pge~~~~~~~y~f 326 (326)
T cd09019 303 NHPNFPSIILRPGETYRHTTVYRF 326 (326)
T ss_pred cccCCCCeEECCCCEEEEEEEEEC
Confidence 24689999999999998875
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=258.86 Aligned_cols=254 Identities=21% Similarity=0.295 Sum_probs=179.4
Q ss_pred CCCceEEEEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeCCC-CCCCCCCCccc-cccEEccccCCCC-----------
Q 036760 15 NNGLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVSSK-ATFKPPKAIRG-GIPICFPQFASLG----------- 81 (315)
Q Consensus 15 ~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~~~-~~~~~~~~irg-G~pilfP~~gr~~----------- 81 (315)
......+++.|+.++.++|..+||.|++|+. ++++++...+. +.+. ..++ +.++|+||+|||.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~---~~~~~~ga~l~p~anRI~~g~f~~~G~~y 84 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYP---ATRGYGGAILGPYANRISNGRFTLDGKTY 84 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhc---cccccccceecCccCcccCCEEEECCEEE
Confidence 4456788899987788888899999999998 67777654442 2221 1123 6788999999994
Q ss_pred -------CCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeC
Q 036760 82 -------SLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNT 154 (315)
Q Consensus 82 -------~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~ 154 (315)
+.++||+++..+|+|..... .+...++|.+.+. ..+|||+|+++++|+|.+ ++|+|+|+++|.
T Consensus 85 ~L~~N~~~~~lHG~~~~~~~~v~~~~~------~~~~~~~l~~~~~---~~gyP~~l~~~vtY~L~~-~~L~v~~~~~n~ 154 (308)
T COG2017 85 QLPPNEGGNALHGGARDFDWQVWEAEE------DDNAEFSLVLRDG---EDGYPGNLEATVTYTLNE-DGLTVTYEVTND 154 (308)
T ss_pred EeCCCCCCccccCCccCCCeeEEEEEe------ccCCEEEEEeccc---CCCCCceEEEEEEEEEcC-CCEEEEEEEEeC
Confidence 23599999999999998852 1222566666543 456999999999999998 669999999999
Q ss_pred CCCCccEEEeeeccceeecCCcce---eEEEcCCCCcee---e--cCCccce--e-eecCCeeecCCCcceEEeCC----
Q 036760 155 STDGKPFSFTFAYHTYFSVSDISE---VRVEGLETLDYL---D--NLQNKER--F-TEQGDAITFESEVDKIYLST---- 219 (315)
Q Consensus 155 n~~~~~~p~~~g~HpYF~~~~~~~---~~i~gl~~~~~~---d--~l~~~~~--~-~~~~~~~~~~~~~D~~y~~~---- 219 (315)
++++|||++|+||||+++...+ +... ....|+ + .++++.. . ......+.....+|+.|.-.
T Consensus 155 --~~~~~p~~~g~HpYFnl~~~~~~~~~~~~--~~~~~l~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~ 230 (308)
T COG2017 155 --GDEPTPFNLGNHPYFNLPGDGRLEHILAI--ASDYYLPVDDEEPIPTGDIKREPKPLEDDFAADDPYDHAFLLNGARG 230 (308)
T ss_pred --CCCcceecccccceEecCCCCCcccEEEe--cCCceEEcccCCCCCcccccccccccccccccccccccceeeccccC
Confidence 9999999999999999996543 2222 122333 1 2333210 0 00011111112257777422
Q ss_pred -CCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee-----c----CceEeCCCCEEE
Q 036760 220 -PTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV-----E----KPITLKPGEEWK 289 (315)
Q Consensus 220 -~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~-----~----~~~~L~PGe~~~ 289 (315)
...+.|.++.++++|+|.++ .|.++||+.... + .+.|+|||||+. + +.++|+|||+++
T Consensus 231 ~~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~-~----------~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~~~ 298 (308)
T COG2017 231 LKPAARLYDPDSGLSLEVETD-EPFVQLYTGNFL-A----------GRDGLCLEPQSGLPDAFNHPGFGLIVLEPGETYS 298 (308)
T ss_pred CcceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCC-C----------cCCeEEeeeccCCCCcCCCCCcccceeCCCCEEE
Confidence 34899999999999999987 677777765211 0 157999999982 2 347799999999
Q ss_pred EEEEEEEee
Q 036760 290 GRLELSGVP 298 (315)
Q Consensus 290 ~~~~i~~~~ 298 (315)
..++|++..
T Consensus 299 ~~~~~~~~~ 307 (308)
T COG2017 299 AETRFRFES 307 (308)
T ss_pred EEEEEEEec
Confidence 999999864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=100.00 E-value=1.7e-31 Score=249.90 Aligned_cols=266 Identities=15% Similarity=0.219 Sum_probs=183.8
Q ss_pred CCceEEEEecCCCcEEEEEcCCeEEEEEEe--CCC--eeEEEeCC-CCCCCCCCCccccccEEccccCCCC---------
Q 036760 16 NGLDKVVLRESRGSSAEVYLYGGHVTSWKN--DHG--EELLFVSS-KATFKPPKAIRGGIPICFPQFASLG--------- 81 (315)
Q Consensus 16 ~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~--~~g--~evL~~~~-~~~~~~~~~irgG~pilfP~~gr~~--------- 81 (315)
+.+..++|+|+. ++++|..+||.|++|+. ++| ++++...+ .+.+....+..| +++.||+|||.
T Consensus 7 ~~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~G--a~lgp~anRI~~g~~~~~G~ 83 (337)
T PLN00194 7 EKPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYFG--AIVGRVANRIKGAKFTLNGV 83 (337)
T ss_pred CeeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccC--CeeCCCCCceeCCEEEECCE
Confidence 456789999985 99999999999999986 234 56654333 322332234433 44889999984
Q ss_pred ---------CCCCceeee---cCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEE
Q 036760 82 ---------SLESHGFAR---NRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLIS 149 (315)
Q Consensus 82 ---------~~~~HGf~r---~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~ 149 (315)
...+||+.+ .+.|+|+... +++..+|+|++.+. +...+|||+|+++++|+|.++++|++++
T Consensus 84 ~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~------~~~~~~v~~~l~~~-~~~~gyP~~~~~~v~Y~L~~~~~L~i~~ 156 (337)
T PLN00194 84 TYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK------KGEKPSITFKYHSF-DGEEGFPGDLSVTVTYTLLSSNTLRLDM 156 (337)
T ss_pred EEEeccCCCCcccCCCCcccCceEEeEEEec------cCCCcEEEEEEECC-CcCCCCCEEEEEEEEEEECCCCeEEEEE
Confidence 234797543 3899998763 12346799999865 3578999999999999998548999999
Q ss_pred EEEeCCCCCccEEEeeeccceeecCC-----cceeEEEcCCCCcee----ecCCccceeeecCCeeecC-----------
Q 036760 150 RVRNTSTDGKPFSFTFAYHTYFSVSD-----ISEVRVEGLETLDYL----DNLQNKERFTEQGDAITFE----------- 209 (315)
Q Consensus 150 ~v~N~n~~~~~~p~~~g~HpYF~~~~-----~~~~~i~gl~~~~~~----d~l~~~~~~~~~~~~~~~~----------- 209 (315)
+++|. +++|||++|+||||+++. +.+..+.- ....++ +.+|+++.....+..++|.
T Consensus 157 ~~~n~---~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i-~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~ 232 (337)
T PLN00194 157 EAKPL---NKATPVNLAQHTYWNLAGHNSGDILSHKIQI-FGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINE 232 (337)
T ss_pred EEEEC---CCCeEEEccccceEEcCCCCCCCcCCeEEEE-ecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhcc
Confidence 99875 689999999999999974 33434432 223443 2467664332222222221
Q ss_pred --CCcceEEeC-------CCCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchh-ccccCCCCCCCCceEEEceeee---
Q 036760 210 --SEVDKIYLS-------TPTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKA-KAMADFGDDEYKHMLCVEAAAV--- 276 (315)
Q Consensus 210 --~~~D~~y~~-------~~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~-~~~~d~~~~~~~~fvCvEP~~~--- 276 (315)
.++|++|.- +...++|.++.++++|+|.++ .|.++||++..... .+... ..-..+.+||||||+.
T Consensus 233 ~~~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~~~~~~~~-~~~~~~~~i~lEpq~~pda 310 (337)
T PLN00194 233 LPKGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVNGVKGKGG-AVYGKHAGLCLETQGFPDA 310 (337)
T ss_pred ccCCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCCCccCCCC-CEeCCCCEEEEeccCCCCc
Confidence 268999961 122688999888999999998 79999999742110 00000 0001256999999973
Q ss_pred -c----CceEeCCCCEEEEEEEEEEe
Q 036760 277 -E----KPITLKPGEEWKGRLELSGV 297 (315)
Q Consensus 277 -~----~~~~L~PGe~~~~~~~i~~~ 297 (315)
+ +.++|+|||.++..++++|.
T Consensus 311 ~n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 311 VNQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred ccCCCCCCeEECCCCEEEEEEEEEEe
Confidence 2 45899999999999999885
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=100.00 E-value=8.8e-32 Score=251.76 Aligned_cols=262 Identities=15% Similarity=0.198 Sum_probs=181.4
Q ss_pred CceEEEEecCCCcEEEEEcCCeEEEEEEeC---CCeeEEE-eCCCCCCCCCCCccccccEEccccCCCC-----------
Q 036760 17 GLDKVVLRESRGSSAEVYLYGGHVTSWKND---HGEELLF-VSSKATFKPPKAIRGGIPICFPQFASLG----------- 81 (315)
Q Consensus 17 ~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~---~g~evL~-~~~~~~~~~~~~irgG~pilfP~~gr~~----------- 81 (315)
.+..++|+|.++++|+|..+||.|.+|+.+ +.++++. ..+.+.|....+. .|. ++.||+|||.
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~-~Ga-~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAY-LGA-TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCc-cCC-CcCCCCceecCCEEEECCEEE
Confidence 367899999888999999999999999962 2345653 3323334323333 333 4779999994
Q ss_pred -------CCCCceee---ecCCcEEec-cCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEE
Q 036760 82 -------SLESHGFA---RNRFWSIDT-DPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISR 150 (315)
Q Consensus 82 -------~~~~HGf~---r~~~W~v~~-~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~ 150 (315)
...+||+. +.+.|++.. .. ..+|+|.+.+.+ ...+||++++++++|+|+++++|+|+++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~---------~~~v~l~~~~~~-~~~gyPg~l~~~vtY~L~~~~~L~i~~~ 150 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE---------EVQVKFSLESPD-GDQGFPGNLTVSVTYTLTDDNELTIEYE 150 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC---------CCEEEEEEECCC-cCCCCCeEEEEEEEEEECCCCEEEEEEE
Confidence 23599998 778999976 42 346889888654 4789999999999999965589999999
Q ss_pred EEeCCCCCccEEEeeeccceeecCCc------ceeEEEcCCCCcee----ecCCccceeeecCCeeecC-----------
Q 036760 151 VRNTSTDGKPFSFTFAYHTYFSVSDI------SEVRVEGLETLDYL----DNLQNKERFTEQGDAITFE----------- 209 (315)
Q Consensus 151 v~N~n~~~~~~p~~~g~HpYF~~~~~------~~~~i~gl~~~~~~----d~l~~~~~~~~~~~~~~~~----------- 209 (315)
++ ++++|||++|+||||+++.. .+..+. +.+..++ +.+|+++.....+..++|.
T Consensus 151 a~----~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~-i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~ 225 (335)
T TIGR02636 151 AT----TDKATPFNLTNHVYFNLDGADAGSDVLSHELQ-LNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLA 225 (335)
T ss_pred EE----ECCceEEeccccceEEcCCCCCCCChhceEEE-EECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCccccc
Confidence 85 68999999999999999752 233333 1233443 2466664332222223322
Q ss_pred -------CCcceEEeC---C---CCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhcccc-CCCCCCCCceEEEceee
Q 036760 210 -------SEVDKIYLS---T---PTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMA-DFGDDEYKHMLCVEAAA 275 (315)
Q Consensus 210 -------~~~D~~y~~---~---~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~~-d~~~~~~~~fvCvEP~~ 275 (315)
.++|++|.- . ...++|.++.+++.|+|.++ .|.++||++..-... .. .-.....+..||||||+
T Consensus 226 ~~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~-~~~~g~~~~~~~gialE~q~ 303 (335)
T TIGR02636 226 NDQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTT-QPALQIYTGNFLAGT-PNRGGKKYVDHAGLALETQF 303 (335)
T ss_pred ccccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEecC-CCEEEEecCCCcCCc-cCCCCcEeCCCcEEEEeccc
Confidence 268999961 1 22588999999999999997 899999997321100 00 00001135789999998
Q ss_pred e----c----Cc--eEeCCCCEEEEEEEEEEe
Q 036760 276 V----E----KP--ITLKPGEEWKGRLELSGV 297 (315)
Q Consensus 276 ~----~----~~--~~L~PGe~~~~~~~i~~~ 297 (315)
. + +. ++|+|||.+...+.|+|.
T Consensus 304 ~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f~ 335 (335)
T TIGR02636 304 LPDSPNHPEWGDISCILSPGQEYQHQTRYQFI 335 (335)
T ss_pred CCCcccccCCCCCceEECCCCEEEEEEEEEEC
Confidence 3 1 22 359999999999999873
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.98 E-value=1.9e-30 Score=242.73 Aligned_cols=262 Identities=18% Similarity=0.258 Sum_probs=181.9
Q ss_pred CCceEEEEecCCCcEEEEEcCCeEEEEEEe--CCC--eeEE-EeCCCCCCCCCCCccccccEEccccCCCC---------
Q 036760 16 NGLDKVVLRESRGSSAEVYLYGGHVTSWKN--DHG--EELL-FVSSKATFKPPKAIRGGIPICFPQFASLG--------- 81 (315)
Q Consensus 16 ~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~--~~g--~evL-~~~~~~~~~~~~~irgG~pilfP~~gr~~--------- 81 (315)
..+..++|+|.++++|+|..+||.|++|+. ++| ++|+ -..+.+.|....+..| .++.||+|||.
T Consensus 7 ~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~G--a~iGr~anRI~~g~f~~~G~ 84 (342)
T PRK11055 7 QPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLG--ASVGRYANRIANSRFTLDGE 84 (342)
T ss_pred CeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccC--ceeCCcCCcccCCEEEECCE
Confidence 457789999987899999999999999996 345 4655 3333333432334444 45889999994
Q ss_pred ---------CCCCceee---ecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEE
Q 036760 82 ---------SLESHGFA---RNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLIS 149 (315)
Q Consensus 82 ---------~~~~HGf~---r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~ 149 (315)
...+||.. +.+.|+++... ..+|+|++.+. +...+|||++.++++|+|+++++|+|++
T Consensus 85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~---------~~~v~l~~~~~-~g~~GyPg~l~~~vtY~L~~~~~l~i~~ 154 (342)
T PRK11055 85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN---------DRQVTFSLSSP-DGDQGFPGNLGATVTYRLTDDNRVSITY 154 (342)
T ss_pred EEEcccCCCCcccCCCCcccCCcEEEEEEcc---------CCEEEEEEECC-CcCCCCCeEEEEEEEEEEcCCCeEEEEE
Confidence 24688875 45799997653 34688888865 4578999999999999999756888888
Q ss_pred EEEeCCCCCccEEEeeeccceeecCCc------ceeEEEcCCCCcee--e--cCCccceeeecCCeeecC----------
Q 036760 150 RVRNTSTDGKPFSFTFAYHTYFSVSDI------SEVRVEGLETLDYL--D--NLQNKERFTEQGDAITFE---------- 209 (315)
Q Consensus 150 ~v~N~n~~~~~~p~~~g~HpYF~~~~~------~~~~i~gl~~~~~~--d--~l~~~~~~~~~~~~~~~~---------- 209 (315)
++ + +++++||++|+||||+++.. .+..+. +.+..++ | .+|+++.....+..++|.
T Consensus 155 ~a--~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~-i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~ 229 (342)
T PRK11055 155 RA--T--VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQ-INADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFL 229 (342)
T ss_pred EE--E--cCCCeEEeccccceEECCCCCCCCCccceEEE-EecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccc
Confidence 75 5 78999999999999999741 122332 1233443 2 567664322222222221
Q ss_pred --------CCcceEEeC-C-----CCeEEEEeCCCCcEEEEEeCCCCcEEEeCCccchhccccCCCC--CCCCceEEEce
Q 036760 210 --------SEVDKIYLS-T-----PTKIAILDHEKKRTFVIRKDGLPDAVVWNPWDKKAKAMADFGD--DEYKHMLCVEA 273 (315)
Q Consensus 210 --------~~~D~~y~~-~-----~~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~--~~~~~fvCvEP 273 (315)
.++|++|.- . ...+.+.++.++++|+|.++ .|.++||++..-... . .... ...+..|||||
T Consensus 230 ~~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~lqvYT~n~~~~~-~-~~~g~~~~~~~gialE~ 306 (342)
T PRK11055 230 ADDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTT-APALQFYSGNFLAGT-P-SRGGGPYADYAGLALES 306 (342)
T ss_pred cchhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcC-CCEEEEecCCccCCc-c-CCCCcEeCCCceEEEEc
Confidence 368999942 1 12478889899999999997 899999997421100 0 0000 11246799999
Q ss_pred eee-------c---CceEeCCCCEEEEEEEEEEe
Q 036760 274 AAV-------E---KPITLKPGEEWKGRLELSGV 297 (315)
Q Consensus 274 ~~~-------~---~~~~L~PGe~~~~~~~i~~~ 297 (315)
|.. . +.++|+|||.+...+.++|.
T Consensus 307 q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 307 QFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred ccCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 973 1 26899999999999999885
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.97 E-value=3.5e-29 Score=235.34 Aligned_cols=277 Identities=12% Similarity=0.096 Sum_probs=189.5
Q ss_pred ceEEEecCCCceEEEEecCCCcEEEEEcCCeEEEEEEe--CC-C--eeEEE-eCC-CCCCCCCCCccccccEEccccCCC
Q 036760 8 PVEFCKGNNGLDKVVLRESRGSSAEVYLYGGHVTSWKN--DH-G--EELLF-VSS-KATFKPPKAIRGGIPICFPQFASL 80 (315)
Q Consensus 8 ~~~~~~~~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~--~~-g--~evL~-~~~-~~~~~~~~~irgG~pilfP~~gr~ 80 (315)
++++.. +.....++|+|++ ++++|..+||.|+|++. ++ | ++|+. ..+ .+.|....+. .|+ ++.||+|||
T Consensus 4 ~~~~~~-~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y-~Ga-~iGr~AnRI 79 (376)
T PTZ00485 4 GIEVEP-YGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDY-MGA-TVGRCAGRV 79 (376)
T ss_pred eeEEEe-cCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCc-cCc-EeCCCCCeE
Confidence 355655 8889999999995 99999999999999986 22 5 46543 432 3344333344 344 467999999
Q ss_pred C----------------------CCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEE
Q 036760 81 G----------------------SLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVA 138 (315)
Q Consensus 81 ~----------------------~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~ 138 (315)
. |.+.+||.+ +.|++.... +.+..+|+|++.+ ++..++||++++++++|+
T Consensus 80 ~~G~f~ldG~~YqL~~Neg~n~LHGG~~gf~~-~~W~v~~~~------~~~~~~V~f~~~~-~dg~~GfPG~l~v~vtYt 151 (376)
T PTZ00485 80 AGGVFTLDGVKYYTQKNRGENTCHCGDDAYHK-KHWGMKLIE------TANVIGVRFNYTS-PHMENGFPGELVSKVTYS 151 (376)
T ss_pred ECCEEEECCEEEEccCCCCCcccCCCCCccce-eeeeEEEec------cCCCcEEEEEEEC-CCcCCCCCEEEEEEEEEE
Confidence 3 234567876 899985432 1224579999987 457899999999999999
Q ss_pred EC--CCCcEEEE---EEEEeCCCCCccEEEeeeccceeecCCc-----------------ce--eEEEcCCCCcee--e-
Q 036760 139 LT--PGGDLMLI---SRVRNTSTDGKPFSFTFAYHTYFSVSDI-----------------SE--VRVEGLETLDYL--D- 191 (315)
Q Consensus 139 L~--~~~~L~i~---~~v~N~n~~~~~~p~~~g~HpYF~~~~~-----------------~~--~~i~gl~~~~~~--d- 191 (315)
|. ++++|+++ ++++|+ +++++|+++++|+|||++.. .+ ++|. ...++ |
T Consensus 152 L~~~~~~~L~i~y~a~~~~n~--~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~---a~~~l~~de 226 (376)
T PTZ00485 152 IERSKPNVLKTIYDSYIPETS--PADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVP---ASRVAEADR 226 (376)
T ss_pred EecCCCCEEEEEEEEEecccc--CCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEe---cCcEEEeCc
Confidence 96 24899999 777788 99999999999999999641 12 3333 23443 2
Q ss_pred -cCCccceeeecCCeeecC-------------------CCcceEEe-CC------CCeEEEEeCCCCcEEEEEeCCCCcE
Q 036760 192 -NLQNKERFTEQGDAITFE-------------------SEVDKIYL-ST------PTKIAILDHEKKRTFVIRKDGLPDA 244 (315)
Q Consensus 192 -~l~~~~~~~~~~~~~~~~-------------------~~~D~~y~-~~------~~~~~l~d~~~~~~i~v~~~~~~~~ 244 (315)
.+|+++.....+..++|. .++|++|. +. ...+.+.++.+|++|+|.++ .|.+
T Consensus 227 ~~IPTG~i~~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~-~P~~ 305 (376)
T PTZ00485 227 MAIPTGEFLSVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYST-FPCM 305 (376)
T ss_pred ccCccCceeccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEEC-CCEE
Confidence 467665322222222221 36899884 32 12478999999999999997 9999
Q ss_pred EEeCCccchhccccCCCCC--CCCceEEEceeee----c-----CceEeCCCCE-EEEEEEEEEeecCCCCCC
Q 036760 245 VVWNPWDKKAKAMADFGDD--EYKHMLCVEAAAV----E-----KPITLKPGEE-WKGRLELSGVPSSYCSGQ 305 (315)
Q Consensus 245 vvw~p~~~~~~~~~d~~~~--~~~~fvCvEP~~~----~-----~~~~L~PGe~-~~~~~~i~~~~~~~~~~~ 305 (315)
+||+......... ..... ..+..||+|||.. + ..++|+|||. +..++.++|.. -||.|
T Consensus 306 qiYT~n~l~~~~~-~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~~--~~~~~ 375 (376)
T PTZ00485 306 WVYTANNKPLPAS-GGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEFTV--ECSSK 375 (376)
T ss_pred EEECCCCCCcccc-CCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEEEe--eccCC
Confidence 9999732111000 00111 1246799999973 2 2489999999 88888888754 36655
No 17
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.8e-23 Score=186.76 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=184.0
Q ss_pred EEecCCCceEEEEecCCCcEEEEEcCCeEEEEEEeC--CCe--e-EEEeCCCCCCCC-CCCccccccEEccccCCCC---
Q 036760 11 FCKGNNGLDKVVLRESRGSSAEVYLYGGHVTSWKND--HGE--E-LLFVSSKATFKP-PKAIRGGIPICFPQFASLG--- 81 (315)
Q Consensus 11 ~~~~~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~--~g~--e-vL~~~~~~~~~~-~~~irgG~pilfP~~gr~~--- 81 (315)
+....+-+..++|.|+.+++|+|..+||.|+|++.. .|+ + +|...+-+.|.. .++..|. .+-.++|||+
T Consensus 13 ~~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGa--tvGRvANRI~~G~ 90 (353)
T KOG1604|consen 13 NTDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGA--TVGRVANRIAKGK 90 (353)
T ss_pred cccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecc--eehhhhhhcccce
Confidence 334456678999999988999999999999999963 332 3 465555555544 3344442 2446667763
Q ss_pred -------------------CCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCC
Q 036760 82 -------------------SLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPG 142 (315)
Q Consensus 82 -------------------~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~ 142 (315)
|.++-||.+ ..|++..... + . .++|++.+ +++.++||+++.++++|+|..+
T Consensus 91 F~ldgk~y~lt~N~g~n~lHgg~~gf~~-~~w~v~~~~~------~-~-~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~ 160 (353)
T KOG1604|consen 91 FSLDGKPYKLTVNNGKNTLHGGIKGFDK-VIWEVVKHQP------D-G-VIVFSHLS-PDGDEGFPGDLKVTVTYTLNVA 160 (353)
T ss_pred EEECCceEEecccCCCccccCCcccccc-eEEEEEEecC------C-C-EEEEEEEC-CCCCCCCCccEEEEEEEEEccC
Confidence 334556776 7999998852 2 2 27888887 6688999999999999999988
Q ss_pred CcEEEEEEEEeCCCCCccEEEeeeccceeecCCc-----c--eeEEEcCCCCceee-cCCccceeeecCCeeec------
Q 036760 143 GDLMLISRVRNTSTDGKPFSFTFAYHTYFSVSDI-----S--EVRVEGLETLDYLD-NLQNKERFTEQGDAITF------ 208 (315)
Q Consensus 143 ~~L~i~~~v~N~n~~~~~~p~~~g~HpYF~~~~~-----~--~~~i~gl~~~~~~d-~l~~~~~~~~~~~~~~~------ 208 (315)
++|.+.++.+-. ++++|+++++|+||||... . .++|.+..-...-+ -+|+|+........+++
T Consensus 161 n~l~i~~~A~~~---~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~l 237 (353)
T KOG1604|consen 161 NRLLIMMEATAL---DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITEVDDTLIPTGEITPVKGTTFDFRKPTVL 237 (353)
T ss_pred Ceeeeeehhhcc---CCCcceeeccceeEeccCCCCCCccceEEEEeecccEecCCccccccceEeccCccccccCCeec
Confidence 999999887533 7999999999999999742 2 24554322111111 35666643333333332
Q ss_pred -------C--CCcceEEe-C-C-C-----CeEEEEeCCCCcEEEEEeCCCCcEEEeCCcc---chhccccCCCCCCCCce
Q 036760 209 -------E--SEVDKIYL-S-T-P-----TKIAILDHEKKRTFVIRKDGLPDAVVWNPWD---KKAKAMADFGDDEYKHM 268 (315)
Q Consensus 209 -------~--~~~D~~y~-~-~-~-----~~~~l~d~~~~~~i~v~~~~~~~~vvw~p~~---~~~~~~~d~~~~~~~~f 268 (315)
. .+.|..|. + . + ..+.+.++.++|.|+|.+. .|.+++|+..- -+.+.-+- .....+
T Consensus 238 gd~~~~~~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~Tn-qPgvqfYTgn~~~~~~gk~g~~---y~k~g~ 313 (353)
T KOG1604|consen 238 GDRIKQFECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTN-QPGVQFYTGNFLPDIKGKKGAV---YPKHGG 313 (353)
T ss_pred cccccccccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeC-CCcEEEEeccccccccCCCceE---eeccce
Confidence 2 24666663 1 1 1 2477889999999999996 99999999510 00100000 012468
Q ss_pred EEEceeee----c----CceEeCCCCEEEEEEEEEEeec
Q 036760 269 LCVEAAAV----E----KPITLKPGEEWKGRLELSGVPS 299 (315)
Q Consensus 269 vCvEP~~~----~----~~~~L~PGe~~~~~~~i~~~~~ 299 (315)
+|+|++.. + ..++|+|||+|...+.++|...
T Consensus 314 ~cletq~~pda~n~~~fp~v~l~pGE~Y~h~~~y~Fsv~ 352 (353)
T KOG1604|consen 314 LCLETQYFPDAVNHPNFPSVILRPGETYTHETVYKFSVV 352 (353)
T ss_pred EEeecccCccccccCCCCceEecCCCeeeeEEEEEEecc
Confidence 99999974 2 2499999999999999998653
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.83 E-value=1.6e-19 Score=165.52 Aligned_cols=238 Identities=18% Similarity=0.177 Sum_probs=148.5
Q ss_pred EE-EcCCeEEEEEEeCCCeeEEEeCCCCC-----CC--CC---CCccccccEE--ccccCCC-----CCCCCceeeecCC
Q 036760 32 EV-YLYGGHVTSWKNDHGEELLFVSSKAT-----FK--PP---KAIRGGIPIC--FPQFASL-----GSLESHGFARNRF 93 (315)
Q Consensus 32 ~I-~~~Ga~l~s~~~~~g~evL~~~~~~~-----~~--~~---~~irgG~pil--fP~~gr~-----~~~~~HGf~r~~~ 93 (315)
+| ...|..|.++.. +|.++.|.++... +. .. ....||.-.- +++.|.- ..+++||.+++.+
T Consensus 3 ~vlp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~p 81 (284)
T cd09023 3 EVLPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNTP 81 (284)
T ss_pred eEcccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCCC
Confidence 44 478999999887 5899988764322 11 00 0112232222 3454532 2579999999999
Q ss_pred cEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeeccceeec
Q 036760 94 WSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFSV 173 (315)
Q Consensus 94 W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF~~ 173 (315)
|+++.... ++++...|+++....+....+|||.++.+++|+|.+ ++|+++++|+|+ |+++||+++++||||..
T Consensus 82 ~~~~~~~~----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~-~~l~i~~~VtN~--g~~~~P~~~~~H~n~~~ 154 (284)
T cd09023 82 AELVGVEE----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLGS-NEIRLEDRVTNE--GFRPTPHMLLYHVNFGY 154 (284)
T ss_pred cceEEEEe----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCC-ceEEEEEEEEeC--CCCCCcceEEeeEEcCC
Confidence 99988742 112344566655543334568999999999999998 999999999999 99999999999999987
Q ss_pred CCcc-eeEEEcCCCCcee--e-cCCccce-eeecCCeeecCCCcceEEe-------CCCCeEEEEeCCCCcEEEEEeC--
Q 036760 174 SDIS-EVRVEGLETLDYL--D-NLQNKER-FTEQGDAITFESEVDKIYL-------STPTKIAILDHEKKRTFVIRKD-- 239 (315)
Q Consensus 174 ~~~~-~~~i~gl~~~~~~--d-~l~~~~~-~~~~~~~~~~~~~~D~~y~-------~~~~~~~l~d~~~~~~i~v~~~-- 239 (315)
+... +.+|.... ..+. + ....+.. +.....+ .....+.+|. +....+.|.++..+..+.|..+
T Consensus 155 p~l~~~~~l~~p~-~~~~p~~~~~~~~~~~~~~~~~p--~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~ 231 (284)
T cd09023 155 PLLDEGARLEIPS-KEVTPRDAHAAEGLASWNTYLAP--TPGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTD 231 (284)
T ss_pred cccCCCCEEEecc-cccccCChhhcccccccccccCC--CCCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehh
Confidence 6322 33433211 1111 1 1110000 0000000 0011233332 1124688888887766666654
Q ss_pred CCCcEEEeCCccchhccccCCCCCCCCceEEEceeee-----------cCceEeCCCCEEEEEE
Q 036760 240 GLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV-----------EKPITLKPGEEWKGRL 292 (315)
Q Consensus 240 ~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~-----------~~~~~L~PGe~~~~~~ 292 (315)
.+|++++|+..... ...+||||++. .+++.|+|||+++.++
T Consensus 232 ~~p~~~~W~~~~~~------------~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 232 TLPYLTQWKNTGAG------------AYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred hCCHHHHHhccCCC------------ccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 59999999974211 35678999983 2469999999988664
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.34 E-value=6.1e-11 Score=109.42 Aligned_cols=251 Identities=17% Similarity=0.207 Sum_probs=131.3
Q ss_pred CCceEEEEecCCCcEEEEE-cCCeEEEEEEeCCCeeEEEeCCCC-----CCC--CC-CCcc--cc-ccEEcc-ccCCCC-
Q 036760 16 NGLDKVVLRESRGSSAEVY-LYGGHVTSWKNDHGEELLFVSSKA-----TFK--PP-KAIR--GG-IPICFP-QFASLG- 81 (315)
Q Consensus 16 ~~~~~~~L~n~~~~~a~I~-~~Ga~l~s~~~~~g~evL~~~~~~-----~~~--~~-~~ir--gG-~pilfP-~~gr~~- 81 (315)
.|+..++|+|+.+++++|. ..|.-|.+... +|.++-|.++.. +++ .+ ...+ +| ..-|-+ ..|.-.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 5789999999668999997 79999999998 689988876542 111 00 0000 01 111111 222211
Q ss_pred ----CCCCceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEE--CCCCcEEEEEEEEeCC
Q 036760 82 ----SLESHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVAL--TPGGDLMLISRVRNTS 155 (315)
Q Consensus 82 ----~~~~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L--~~~~~L~i~~~v~N~n 155 (315)
.+++||=..+.+|+.+.... .+++...+.++=.-.+ ...|-.+++++=++++ .. +.++|+.+|+|.
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~----~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~-~~i~i~d~VtN~- 152 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI----WDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGS-NTIRIEDRVTNL- 152 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE----ESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred cCCccccccccccCCCcceEEEEE----ecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCC-cEEEEEEEEEEC-
Confidence 36999999999998665531 1122334444322112 2345556666555555 65 899999999999
Q ss_pred CCCccEEEeeeccceeecC---CcceeEEEcCCCCcee---ecC----CccceeeecCCeeecCCCcceEEe-----CCC
Q 036760 156 TDGKPFSFTFAYHTYFSVS---DISEVRVEGLETLDYL---DNL----QNKERFTEQGDAITFESEVDKIYL-----STP 220 (315)
Q Consensus 156 ~~~~~~p~~~g~HpYF~~~---~~~~~~i~gl~~~~~~---d~l----~~~~~~~~~~~~~~~~~~~D~~y~-----~~~ 220 (315)
+..+||+.+.+|.-|-.+ +..++.... ..+. +.. .......... ...-+.||. +..
T Consensus 153 -~~~p~p~m~lyH~N~G~pll~eg~ri~~p~---~~~~~~~~~a~~~~~~~~~~~~P~-----~~~~E~Vy~~~~~~d~~ 223 (302)
T PF14486_consen 153 -GFQPMPLMYLYHMNFGYPLLDEGARIVAPT---KEVTPRDDRAAEGIADWDRMPAPQ-----PGFPEQVYFHDLLADED 223 (302)
T ss_dssp -SSS-EEEEEEEEEEE-TTT-STT-EEE--E---EEEEESSGGGGGGSTTTTB---S------TT---EEEEEEE---TT
T ss_pred -CCCCchhHHhhhhccCccccCCCcEEEcCc---ccccCCchhhhcCCccceecCCCC-----CCCCcEEEEecccccCC
Confidence 999999999999998877 333333221 1111 111 1111110000 011234552 122
Q ss_pred C--eEEEEeCCCCcEEEEE--eCCCCcEEEeCCccchhccccCCCCCCCCceEEEceeee----------c-CceEeCCC
Q 036760 221 T--KIAILDHEKKRTFVIR--KDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCVEAAAV----------E-KPITLKPG 285 (315)
Q Consensus 221 ~--~~~l~d~~~~~~i~v~--~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCvEP~~~----------~-~~~~L~PG 285 (315)
+ .+.|.++..+..+.|. ++.+|++..|-..... .+-++|||.+. + ..+.|+||
T Consensus 224 G~~~~~l~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~~------------~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pg 291 (302)
T PF14486_consen 224 GWAHAALVNPDGGLGFEVRFDTSQLPYLTQWKNYGGG------------EYVLGLEPATCRPEGRAAAREAGTLPMLAPG 291 (302)
T ss_dssp SEEEEEEE-SSSS-EEEEEEETTTS-EEEEEEEES-T-------------EEEEEEEESS-SS-HHHHHHTT--EEE-TT
T ss_pred CcEEEEEECCCCCcEEEEEEchHHCChhHhheeCCCC------------EeEEEEecccCCCCCHHHHHhCCCcceECCC
Confidence 3 4788888877777665 4579999999763221 35689999983 2 35899999
Q ss_pred CEEEEEEEEEE
Q 036760 286 EEWKGRLELSG 296 (315)
Q Consensus 286 e~~~~~~~i~~ 296 (315)
|+.+.++++.+
T Consensus 292 e~~~~~l~~~v 302 (302)
T PF14486_consen 292 ESREFSLEFGV 302 (302)
T ss_dssp -EEEEEEEEE-
T ss_pred CeEEEEEEecC
Confidence 99998888764
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.19 E-value=3.5e-10 Score=103.82 Aligned_cols=189 Identities=12% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCCCceee----ecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECC-CCcEEEEEEEEeCCC
Q 036760 82 SLESHGFA----RNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTP-GGDLMLISRVRNTST 156 (315)
Q Consensus 82 ~~~~HGf~----r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~-~~~L~i~~~v~N~n~ 156 (315)
.+++||-. +...|.++..+ ++...++++-. -....+||++|+++.+|+|.. ++.|+|+++|+|+
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d-------~~~~~l~l~g~--~~~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~-- 129 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGED-------ASGDYLALTGE--YEYVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNL-- 129 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEec-------CCCCEEEEEEE--EEeeeccCccEEEEEEEEEeCCCCEEEEEEEEEEC--
Confidence 57899994 44555555321 22344544433 223468999999999999974 3789999999999
Q ss_pred CCccEEEeeeccceeecCCcceeEEEcCC-CCceeecCCc-----c-c-e----eeecCC---eeecCCCc--ceEEe-C
Q 036760 157 DGKPFSFTFAYHTYFSVSDISEVRVEGLE-TLDYLDNLQN-----K-E-R----FTEQGD---AITFESEV--DKIYL-S 218 (315)
Q Consensus 157 ~~~~~p~~~g~HpYF~~~~~~~~~i~gl~-~~~~~d~l~~-----~-~-~----~~~~~~---~~~~~~~~--D~~y~-~ 218 (315)
++.|||+++++|+||......++...-+. .......++. . . . ..++.. .+.-.... ..||. .
T Consensus 130 g~~p~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~ 209 (293)
T cd09269 130 SAQPMPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFAD 209 (293)
T ss_pred CCCCChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEee
Confidence 99999999999999987543333321110 0000001110 0 0 0 000000 00001111 13342 1
Q ss_pred ------CCCeEEEEeCCCC-cEEEEEeCCCCcEEEeCCccchhccccCCCCCCCCceEEE-ceeee-----------cCc
Q 036760 219 ------TPTKIAILDHEKK-RTFVIRKDGLPDAVVWNPWDKKAKAMADFGDDEYKHMLCV-EAAAV-----------EKP 279 (315)
Q Consensus 219 ------~~~~~~l~d~~~~-~~i~v~~~~~~~~vvw~p~~~~~~~~~d~~~~~~~~fvCv-EP~~~-----------~~~ 279 (315)
....+.|.+++++ ..|+..++.+|++..|--.... .+-..+ ||.+. ...
T Consensus 210 ~~~~~~~~~~~~l~n~~g~~~~~~f~~~~lP~~~~W~~~~~~------------~~v~~~~~PaT~~p~g~~~ar~~G~l 277 (293)
T cd09269 210 DLGKYTGWAHFMMVHPDGDAFYTRFSTAEFPYATRWILYNGD------------QQVAAFALPATCRPEGYLAAKEAGTL 277 (293)
T ss_pred cccccCCcEEEEEECCCCCEEEEEEchhhCChhheehhcCCC------------cceEEEEccCCCCcCChHHHHHCCCc
Confidence 1146788887755 3344445679999999732111 223455 59983 235
Q ss_pred eEeCCCCEEEEEEE
Q 036760 280 ITLKPGEEWKGRLE 293 (315)
Q Consensus 280 ~~L~PGe~~~~~~~ 293 (315)
+.|+|||+++.+++
T Consensus 278 ~~L~pGe~~~f~l~ 291 (293)
T cd09269 278 RTLAPGETRRFSVT 291 (293)
T ss_pred ceeCCCCeEEEEEe
Confidence 89999999987654
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.71 E-value=0.037 Score=50.53 Aligned_cols=127 Identities=17% Similarity=0.168 Sum_probs=76.3
Q ss_pred ceEEEEecCCCcEEEEE-cCCeEEEEEEeCCCeeEEEeCCC---CCC---CCCCCccccccEEc--cc-cCCCC--CCCC
Q 036760 18 LDKVVLRESRGSSAEVY-LYGGHVTSWKNDHGEELLFVSSK---ATF---KPPKAIRGGIPICF--PQ-FASLG--SLES 85 (315)
Q Consensus 18 ~~~~~L~n~~~~~a~I~-~~Ga~l~s~~~~~g~evL~~~~~---~~~---~~~~~irgG~pilf--P~-~gr~~--~~~~ 85 (315)
..+++|+|+. .++.|. ..|++|+++...+|.++|+.... ... .......||. -+| |. .-|.. ..+.
T Consensus 4 ~~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~P 81 (274)
T PF14315_consen 4 GNCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPP 81 (274)
T ss_pred ceEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCC
Confidence 3689999995 999997 89999999988667788843322 111 1112233443 344 22 00100 0111
Q ss_pred ceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCc--EEEEEEEEeCCCCCccEEE
Q 036760 86 HGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGD--LMLISRVRNTSTDGKPFSF 163 (315)
Q Consensus 86 HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~--L~i~~~v~N~n~~~~~~p~ 163 (315)
--+..+.+|++... ...|+|+-..++ . ..++++.+|+|.+ ++ +.++.+++|. ++.+.++
T Consensus 82 d~~ld~~p~~~~~~----------~~~v~L~s~~~~--~----tgiq~~~~i~l~~-~~~~i~v~~~i~N~--~~~~~~~ 142 (274)
T PF14315_consen 82 DPVLDNGPYEVEID----------DDGVRLTSPPSP--K----TGIQKERTITLDA-DRPSIEVTHRITNI--GDWPVEW 142 (274)
T ss_pred cccccCCceeEEEc----------CCEEEEecCCCC--c----cCcEEEEEEEECC-CCCEEEEEEEEEeC--CCCccee
Confidence 11333566766652 345655543222 1 2478999999987 55 9999999999 8888765
Q ss_pred ee
Q 036760 164 TF 165 (315)
Q Consensus 164 ~~ 165 (315)
.+
T Consensus 143 a~ 144 (274)
T PF14315_consen 143 AP 144 (274)
T ss_pred ee
Confidence 44
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=91.91 E-value=3.4 Score=39.18 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=66.3
Q ss_pred ceEEEEecCCCcEEEEEcCCeEEEEEEeCCC--------eeEEEeCCCCCCCCCCCccccccEEcc-ccCCCCC-CCCce
Q 036760 18 LDKVVLRESRGSSAEVYLYGGHVTSWKNDHG--------EELLFVSSKATFKPPKAIRGGIPICFP-QFASLGS-LESHG 87 (315)
Q Consensus 18 ~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g--------~evL~~~~~~~~~~~~~irgG~pilfP-~~gr~~~-~~~HG 87 (315)
-..|+|+++. ++++|...||.|.++..++- ..+....+.. ...++ ..|.+.. .+.-.
T Consensus 73 ~~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~ 139 (366)
T TIGR03593 73 AKRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLA 139 (366)
T ss_pred CCeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCccc
Confidence 3579999995 99999999999999986311 2221111111 01111 1222211 11000
Q ss_pred -eeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCC-CcEEEEEEEEeCCCCCccEE
Q 036760 88 -FARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPG-GDLMLISRVRNTSTDGKPFS 162 (315)
Q Consensus 88 -f~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~-~~L~i~~~v~N~n~~~~~~p 162 (315)
...+..|++....-.+ .++...|+|++... ....++.+|+|.++ -.+.++++|+|. ++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~l---~~~~~~v~l~~~~~--------~G~~v~k~ytf~~~sY~i~v~~~v~N~--~~~~~~ 203 (366)
T TIGR03593 140 LPGHRTVWQAEGGEYTL---TPGQLPVTLTWDNS--------NGVTVTKTYTFDRDSYLIDVEYKVTNN--GDAPVS 203 (366)
T ss_pred CCCCCceEEeCCCceee---CCCCEEEEEEEECC--------CCeEEEEEEEEeCCeEEEEeEEEEEeC--CCCCee
Confidence 1334578776431000 11234577766532 23789999999873 268888889888 766554
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=91.47 E-value=2.9 Score=37.61 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=55.3
Q ss_pred EEEEecCCCcEEEEEcCCeEEEEEEeC--------CCeeE-EEeCCCCCCCCCCCccccccEEccccCCCCCCCCceeee
Q 036760 20 KVVLRESRGSSAEVYLYGGHVTSWKND--------HGEEL-LFVSSKATFKPPKAIRGGIPICFPQFASLGSLESHGFAR 90 (315)
Q Consensus 20 ~~~L~n~~~~~a~I~~~Ga~l~s~~~~--------~g~ev-L~~~~~~~~~~~~~irgG~pilfP~~gr~~~~~~HGf~r 90 (315)
.++|+|+. .+++|...||.|.++..+ ++.++ |....... .-+.-|.+.-........- .
T Consensus 1 ~v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~~---------~~~~~~~l~~~~~~~~~~~--~ 68 (270)
T PF14849_consen 1 RVTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDEE---------NYPLAFGLVFNTGGAQLPT--N 68 (270)
T ss_dssp -EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETTE---------EEEEEEEEESTT--TTSGG--S
T ss_pred CEEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCCc---------ceEEEEcccccCccccCCC--c
Confidence 37899995 999999999999999852 11122 21111100 0112223321110001111 5
Q ss_pred cCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECC-CCcEEEEEEEEeCCCCCccEEE
Q 036760 91 NRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTP-GGDLMLISRVRNTSTDGKPFSF 163 (315)
Q Consensus 91 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~-~~~L~i~~~v~N~n~~~~~~p~ 163 (315)
+..|++..... .-....+..+++|++.... .+.++.+|+|.+ +-.+.++++++|. ++.+...
T Consensus 69 ~~~f~~~~~~~-~l~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~--~~~~~~~ 131 (270)
T PF14849_consen 69 DLYFSVSQKSY-TLKEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNL--SDQPVSL 131 (270)
T ss_dssp --B-B-S-SEE-E--TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE----SSS-EEE
T ss_pred cceEEEcCCce-eeccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECC--CCCcccc
Confidence 56787765310 0000123566777766321 268999999985 2456677777777 7666555
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=89.44 E-value=10 Score=37.89 Aligned_cols=121 Identities=12% Similarity=0.169 Sum_probs=63.0
Q ss_pred EEEEecCCCcEEEEEcCCeEEEEEEeCC-----C--eeEEEeCCCCCCCCCCCccccccEEccccCCCCC--CCCceeee
Q 036760 20 KVVLRESRGSSAEVYLYGGHVTSWKNDH-----G--EELLFVSSKATFKPPKAIRGGIPICFPQFASLGS--LESHGFAR 90 (315)
Q Consensus 20 ~~~L~n~~~~~a~I~~~Ga~l~s~~~~~-----g--~evL~~~~~~~~~~~~~irgG~pilfP~~gr~~~--~~~HGf~r 90 (315)
.++++++. .+++|...||.|.++..++ + .++....+... ..-+.-+=|.|.-++ ...++
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~~--------~~y~~~~g~~~~~~~~~~~~~~--- 107 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPSTE--------HPYFAQSGLTGADGPDNVPNPD--- 107 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCCC--------cceeeeeccccCCCcccccCCC---
Confidence 78999995 9999999999999998631 1 12211111110 000111112211000 01111
Q ss_pred cCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCC-CcEEEEEEEEeCCCCCccEEE
Q 036760 91 NRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPG-GDLMLISRVRNTSTDGKPFSF 163 (315)
Q Consensus 91 ~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~-~~L~i~~~v~N~n~~~~~~p~ 163 (315)
+..|+.....- ...+.++...++|++... ..+.++.+|+|.++ -.+.++++|+|. ++.++..
T Consensus 108 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~~~~Y~~~~~~~v~n~--~~~~~~~ 170 (521)
T PRK01318 108 RTLYTADGDSL-VLADGQNELPVTLTWTNG--------NGLTFTKTYTLDRGDYMFTVEYSVNNN--SGAPVNL 170 (521)
T ss_pred Ccceeecccce-eeccCCCceEEEEEEECC--------CCeEEEEEEEEcCCceEEEEEEEEEcC--CCCceee
Confidence 35676652210 000112345577766431 23778999999862 347777778776 6665443
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=85.55 E-value=11 Score=34.50 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred cCCCceEEEEecCCCcEEEEEc-CCeEEEEEEeC-CCee---EEEeCCCCCCCCC-----CCcccccc------------
Q 036760 14 GNNGLDKVVLRESRGSSAEVYL-YGGHVTSWKND-HGEE---LLFVSSKATFKPP-----KAIRGGIP------------ 71 (315)
Q Consensus 14 ~~~~~~~~~L~n~~~~~a~I~~-~Ga~l~s~~~~-~g~e---vL~~~~~~~~~~~-----~~irgG~p------------ 71 (315)
+..|.+-+.+++++ +.+.|.. +||+|..|-.. ...+ .|....++|.... ..-..|+.
T Consensus 3 d~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~ 81 (278)
T PF09095_consen 3 DFDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEE 81 (278)
T ss_dssp SSSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HH
T ss_pred CCCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCcc
Confidence 36788999999995 9999985 59999999873 2333 4443444443321 00011111
Q ss_pred ----EEccccCCCC----------------CCC--CceeeecCCcEEeccCCCCCCCCCCceEEEEEeCCCcchhccCCc
Q 036760 72 ----ICFPQFASLG----------------SLE--SHGFARNRFWSIDTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPH 129 (315)
Q Consensus 72 ----ilfP~~gr~~----------------~~~--~HGf~r~~~W~v~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 129 (315)
+.+=|.-|.. ... -=|---+++|++.... ..++|.-.. . ..+.
T Consensus 82 ~~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~----------~~v~f~r~G---~--~~~~ 146 (278)
T PF09095_consen 82 LKEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR----------DEVTFERDG---G--VEGH 146 (278)
T ss_dssp HHTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES----------SEEEEEEEE---E--ESEE
T ss_pred ccccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC----------CceEEEEec---c--cccC
Confidence 0111111110 011 1122234788887663 126665331 1 1678
Q ss_pred ceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEE
Q 036760 130 SFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSF 163 (315)
Q Consensus 130 ~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~ 163 (315)
++.++-+|+|.+ ++|.++|+++ . ++.+..+
T Consensus 147 ~~~l~K~y~l~~-~~l~V~Y~l~-~--~~~~~~~ 176 (278)
T PF09095_consen 147 PITLEKRYRLTK-NGLQVDYRLT-E--SPEPISL 176 (278)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEE----ESS---E
T ss_pred ceEEEEEEEEcC-CEEEEEEEEE-E--CCCCcce
Confidence 899999999998 9999999999 5 4444443
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=59.36 E-value=13 Score=28.34 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=22.0
Q ss_pred EEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 136 RVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 136 ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
.++|.. .....+++|.|+ ||.|..+ |.|-+|
T Consensus 12 ~IelN~-gr~~~~i~V~Nt--GDRPIQV--GSHfHF 42 (106)
T COG0832 12 DIELNA-GRPTVTIEVANT--GDRPIQV--GSHFHF 42 (106)
T ss_pred cEEEeC-CCcceEEEEeec--CCCceEe--ecceee
Confidence 345665 678888899999 9887665 555555
No 27
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=57.52 E-value=31 Score=25.41 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCcceEEEEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 127 WPHSFEFRLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 127 ~P~~f~~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
=|+.++++..|.-.. . .+.+++.|. |..+..|.+--+.|-
T Consensus 5 l~~~~~v~~~~~~~~-g--~l~l~l~N~--g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 5 LPYAPEVTARYDPAT-G--NLRLTLSNP--GSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCCEEEEEEECCC-C--EEEEEEEeC--CCCcEEEEEEeCCcC
Confidence 467777888777654 4 445556698 999999999887773
No 28
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=55.52 E-value=18 Score=27.64 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. +.=.++++|+|+ +|.|.. .|-|-.|
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRpIQ--VGSH~HF 42 (101)
T cd00407 13 IELNA-GREAVTLKVKNT--GDRPIQ--VGSHYHF 42 (101)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceE--Eccccch
Confidence 35565 667788999999 887665 5566555
No 29
>PRK13203 ureB urease subunit beta; Reviewed
Probab=55.51 E-value=18 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. +.=.++++|+|+ +|.|.. .|-|-.|
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQ--VGSH~HF 42 (102)
T PRK13203 13 IELNA-GRETVTLTVANT--GDRPIQ--VGSHYHF 42 (102)
T ss_pred EEeCC-CCCEEEEEEEeC--CCCceE--Eccccch
Confidence 35565 666788999999 887665 5556555
No 30
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=55.37 E-value=19 Score=27.48 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeeccceee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYFS 172 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF~ 172 (315)
+.|.. +.=+++++|+|+ ||.|.. .|-|-.|.
T Consensus 12 I~lN~-gr~~~~l~V~N~--GDRPIQ--VGSH~HF~ 42 (100)
T PF00699_consen 12 IELNA-GRERITLEVTNT--GDRPIQ--VGSHYHFF 42 (100)
T ss_dssp EETTT-TSEEEEEEEEE---SSS-EE--EETTS-GG
T ss_pred EEecC-CCcEEEEEEEeC--CCcceE--EccccCHH
Confidence 45666 677889999999 887665 56666663
No 31
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=55.17 E-value=19 Score=27.48 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. +.=.++++|+|+ +|.|.. .|-|-.|
T Consensus 13 I~ln~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 42 (101)
T TIGR00192 13 ITINE-GRKTVSVKVKNT--GDRPIQ--VGSHFHF 42 (101)
T ss_pred EEeCC-CCcEEEEEEEeC--CCcceE--Eccccch
Confidence 45666 667788999999 887665 5566555
No 32
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=52.89 E-value=1.2e+02 Score=27.61 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=56.6
Q ss_pred EEecCCCcEEEEEcCCeEEEEEEeCCCeeEEEeC-CCCCCCCCCCc-cc-cccE-EccccCCCCCCCCceee-ecCCcEE
Q 036760 22 VLRESRGSSAEVYLYGGHVTSWKNDHGEELLFVS-SKATFKPPKAI-RG-GIPI-CFPQFASLGSLESHGFA-RNRFWSI 96 (315)
Q Consensus 22 ~L~n~~~~~a~I~~~Ga~l~s~~~~~g~evL~~~-~~~~~~~~~~i-rg-G~pi-lfP~~gr~~~~~~HGf~-r~~~W~v 96 (315)
+|+.+ +.++++...-|.|.||+. +|+++|... ....|.+.... ++ +.+. +-.|-. ...+=.. +...+++
T Consensus 1 tV~g~-~f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~~----ag~~~~~~~~~~~~~ 74 (276)
T PF02929_consen 1 TVSGK-DFSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWKD----AGLDRLVTRVRSVKV 74 (276)
T ss_dssp -EEET-TEEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHHH----TTTTCEEEEEEEEEE
T ss_pred CCccC-CEEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccccchhHHHHHH----cCccceeeEEeEEEE
Confidence 46777 488999877779999998 688887432 22333211000 01 0000 001211 1111111 2223444
Q ss_pred eccCCCCCCCCCCceEEEEEeCCCcchhccCCcceEEEEEEEECCCCcEEEEEEEEeC
Q 036760 97 DTDPPAFPTNSSSKAYIDLILRPSEEDLKIWPHSFEFRLRVALTPGGDLMLISRVRNT 154 (315)
Q Consensus 97 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~~~~ty~L~~~~~L~i~~~v~N~ 154 (315)
.... ++..+++....... .=+..+.++++|++..+..+.+++++.-.
T Consensus 75 ~~~~--------~~~~v~v~~~~~~~---~~~~~~~~~~~y~i~~dG~i~v~~~~~~~ 121 (276)
T PF02929_consen 75 EESD--------GDVAVTVTARYAAP---NKSWNFEVTITYTIYADGTIKVDMTFEPS 121 (276)
T ss_dssp EEEE--------SESEEEEEEEEEET---TCCEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred EecC--------CCceEEEEEEEeCC---CcceEEEEEEEEEEcCCCEEEEEEEEEeC
Confidence 4331 22323333322111 12223889999999986788888888644
No 33
>PRK13201 ureB urease subunit beta; Reviewed
Probab=47.81 E-value=27 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. ..=.+++.|+|+ ||.|+. .|-|-.|
T Consensus 13 I~lN~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 42 (136)
T PRK13201 13 VEINN-HHPETVIEVENT--GDRPIQ--VGSHFHF 42 (136)
T ss_pred eEeCC-CCCEEEEEEEeC--CCcceE--eccccch
Confidence 35665 666788999999 887666 5555555
No 34
>PRK13202 ureB urease subunit beta; Reviewed
Probab=47.54 E-value=31 Score=26.54 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=20.5
Q ss_pred EEECCCCc-EEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGD-LMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~-L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. +. =.++++|+|+ ||.|.. .|.|-.|
T Consensus 13 I~ln~-grr~~~~l~V~Nt--GDRPIQ--VGSHyHF 43 (104)
T PRK13202 13 IEMNA-AALSRLQMRIINA--GDRPVQ--VGSHVHL 43 (104)
T ss_pred EEeCC-CCCceEEEEEEeC--CCCceE--Eccccch
Confidence 35665 43 5788899999 887665 5556555
No 35
>PRK13205 ureB urease subunit beta; Reviewed
Probab=45.99 E-value=29 Score=28.54 Aligned_cols=30 Identities=20% Similarity=0.239 Sum_probs=21.5
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. ..=.++++|+|+ +|.|+. .|-|-.|
T Consensus 13 IelN~-GR~~i~L~V~Nt--GDRPIQ--VGSHyHF 42 (162)
T PRK13205 13 LTGNV-GREAKTIEIINT--GDRPVQ--IGSHFHF 42 (162)
T ss_pred eEeCC-CCcEEEEEEEeC--CCCceE--eccccch
Confidence 45665 667788999999 887665 5556555
No 36
>PRK13198 ureB urease subunit beta; Reviewed
Probab=45.25 E-value=30 Score=28.46 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=26.9
Q ss_pred ccCCcceEE-EEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 125 KIWPHSFEF-RLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 125 ~~~P~~f~~-~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
..-|+.+.+ .-.+.|.. +.=.+++.|+|+ ||.|+. .|-|-.|
T Consensus 28 ~~~pGei~~~~g~I~lN~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 70 (158)
T PRK13198 28 NTPLGGLVLAETPITFNE-NKPVTKVKVRNT--GDRPIQ--VGSHFHF 70 (158)
T ss_pred cCCCceEEeCCCCeEeCC-CCcEEEEEEEeC--CCCceE--eccccch
Confidence 344555433 22356776 677889999999 988666 5555555
No 37
>PRK13204 ureB urease subunit beta; Reviewed
Probab=45.10 E-value=31 Score=28.46 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=26.1
Q ss_pred cCCcceEE-EEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 126 IWPHSFEF-RLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 126 ~~P~~f~~-~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
.-|+.+.+ .-.+.|.. ..=.++++|+|+ ||.|+. .|-|-.|
T Consensus 24 ~~pGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 65 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQ-GRPRTTLTVRNT--GDRPIQ--IGSHFHF 65 (159)
T ss_pred CCCCeEEeCCCCeEeCC-CCcEEEEEEEeC--CCCceE--eccccch
Confidence 34554332 12356776 677889999999 887666 5555555
No 38
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=33.50 E-value=3e+02 Score=23.67 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCcchhccCCcceEEEE-EEEECCCCcEEEEEEEEeCCCCCccEEEeee
Q 036760 110 KAYIDLILRPSEEDLKIWPHSFEFRL-RVALTPGGDLMLISRVRNTSTDGKPFSFTFA 166 (315)
Q Consensus 110 ~~~v~l~l~~~~~~~~~~P~~f~~~~-ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g 166 (315)
+-.|+++++.+ ...+-||.|+-.. ..++.....-.+.|.++|. +++++.-...
T Consensus 62 ~R~I~V~F~a~--~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~--sd~~i~g~A~ 115 (188)
T PRK05089 62 SRTITVEFDAN--VNGGLPWEFKPEQRSVDVHPGELNLVFYEAENL--SDRPIVGQAI 115 (188)
T ss_pred CcEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECC--CCCcEEEEEe
Confidence 34566666543 3467899987533 3444443456678999999 9999875554
No 39
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=32.57 E-value=55 Score=28.38 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=26.3
Q ss_pred CCcceEE-EEEEEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 127 WPHSFEF-RLRVALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 127 ~P~~f~~-~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+|+.+.+ .=.+.|.. +.=.++++|+|+ ||.|.. .|-|-.|
T Consensus 111 ~PGei~~~~~~I~lN~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 151 (208)
T PRK13192 111 YPGEILPGDGEIELNA-GRPAVTLDVTNT--GDRPIQ--VGSHFHF 151 (208)
T ss_pred CCCEEEcCCCCeeeCC-CCCEEEEEEEeC--CCCcee--eccccch
Confidence 5665443 12356666 667788999999 888666 5556555
No 40
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=32.54 E-value=3.4e+02 Score=23.66 Aligned_cols=44 Identities=27% Similarity=0.198 Sum_probs=33.1
Q ss_pred cccceEEEecCCCceEEEEecCCCcEEEEEcCCeEEEEEEeCCCe-eEEE
Q 036760 5 KFLPVEFCKGNNGLDKVVLRESRGSSAEVYLYGGHVTSWKNDHGE-ELLF 53 (315)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~L~n~~~~~a~I~~~Ga~l~s~~~~~g~-evL~ 53 (315)
.-++|++.... ..++|.|+ -.+++|..-||.|++++- +|. ++|-
T Consensus 5 ~~~~V~L~~~~---~~VvldNG-iVqVtls~p~G~VtgIkY-nGi~NLle 49 (203)
T PF06045_consen 5 SSSGVTLTVQG---RQVVLDNG-IVQVTLSKPGGIVTGIKY-NGIDNLLE 49 (203)
T ss_pred cCCCeEEEEcC---CEEEEECC-EEEEEEcCCCceEEEEEE-CCEehhhc
Confidence 34557777632 34889999 599999999999999997 576 4553
No 41
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=30.68 E-value=77 Score=30.13 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=23.7
Q ss_pred EEEEEEECCCCcEEEEEEEEeCCCCCccEEEe
Q 036760 133 FRLRVALTPGGDLMLISRVRNTSTDGKPFSFT 164 (315)
Q Consensus 133 ~~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~ 164 (315)
...+|++-. .+|+++++|+|. +++|..++
T Consensus 254 ~~A~Y~vpg-R~l~~~l~VtN~--g~~pv~Lg 282 (381)
T PF04744_consen 254 TDATYRVPG-RTLTMTLTVTNN--GDSPVRLG 282 (381)
T ss_dssp EEEEEESSS-SEEEEEEEEEEE--SSS-BEEE
T ss_pred eccEEecCC-cEEEEEEEEEcC--CCCceEee
Confidence 356889887 999999999999 99887655
No 42
>PRK13986 urease subunit alpha; Provisional
Probab=29.17 E-value=64 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=21.9
Q ss_pred EEECCCCcEEEEEEEEeCCCCCccEEEeeecccee
Q 036760 137 VALTPGGDLMLISRVRNTSTDGKPFSFTFAYHTYF 171 (315)
Q Consensus 137 y~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~HpYF 171 (315)
+.|.. +.=.++++|+|+ ||.|.. .|.|-.|
T Consensus 118 I~lN~-gr~~~~l~V~Nt--GDRPIQ--VGSHyHF 147 (225)
T PRK13986 118 ITINA-GKKAVSVKVKNV--GDRPVQ--VGSHFHF 147 (225)
T ss_pred eecCC-CCcEEEEEEEeC--CCCcee--eccccch
Confidence 46666 667888999999 988666 5556555
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=28.38 E-value=82 Score=23.02 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=13.1
Q ss_pred cEEEEEEEEeCCCCCccEEEe
Q 036760 144 DLMLISRVRNTSTDGKPFSFT 164 (315)
Q Consensus 144 ~L~i~~~v~N~n~~~~~~p~~ 164 (315)
++.+.++|+|. ++++..+.
T Consensus 1 ~v~~~l~v~N~--s~~~v~l~ 19 (82)
T PF12690_consen 1 QVEFTLTVTNN--SDEPVTLQ 19 (82)
T ss_dssp -EEEEEEEEE---SSS-EEEE
T ss_pred CEEEEEEEEeC--CCCeEEEE
Confidence 36788999999 88887765
No 44
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=26.61 E-value=20 Score=26.03 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=17.8
Q ss_pred ceEEEceeeecCceEeCCCCEEEE
Q 036760 267 HMLCVEAAAVEKPITLKPGEEWKG 290 (315)
Q Consensus 267 ~fvCvEP~~~~~~~~L~PGe~~~~ 290 (315)
.|-|+++.+. .++|.|||+|++
T Consensus 56 yF~tLp~nT~--lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNTE--LVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCcE--EEEEcCCCccCC
Confidence 5778888874 689999999963
No 45
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=26.38 E-value=1e+02 Score=21.89 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=11.7
Q ss_pred EeCCCCEEEEEEEEEEe
Q 036760 281 TLKPGEEWKGRLELSGV 297 (315)
Q Consensus 281 ~L~PGe~~~~~~~i~~~ 297 (315)
.|+||++.+..+.+++-
T Consensus 45 ~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 45 SLPPGESVTVTFTVTVP 61 (78)
T ss_dssp -B-TTSEEEEEEEEEE-
T ss_pred cCCCCCEEEEEEEEECC
Confidence 89999998887777663
No 46
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=25.20 E-value=94 Score=29.55 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=23.0
Q ss_pred EEEEEECCCCcEEEEEEEEeCCCCCccEEEe
Q 036760 134 RLRVALTPGGDLMLISRVRNTSTDGKPFSFT 164 (315)
Q Consensus 134 ~~ty~L~~~~~L~i~~~v~N~n~~~~~~p~~ 164 (315)
..+|.+-+ .+|+++++|+|. ++++..++
T Consensus 274 ~a~Y~VPG-R~l~~~~~VTN~--g~~~vrlg 301 (399)
T TIGR03079 274 KANYDVPG-RALRVTMEITNN--GDQVISIG 301 (399)
T ss_pred ccEEecCC-cEEEEEEEEEcC--CCCceEEE
Confidence 34688877 899999999998 99887654
No 47
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=23.15 E-value=1e+02 Score=21.45 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.6
Q ss_pred ceEeCCCCEEEEEEEEEEeecC
Q 036760 279 PITLKPGEEWKGRLELSGVPSS 300 (315)
Q Consensus 279 ~~~L~PGe~~~~~~~i~~~~~~ 300 (315)
.+.|+|||+.+.++.|....++
T Consensus 26 rv~l~pGes~~v~~~l~~~~l~ 47 (71)
T PF14310_consen 26 RVSLAPGESKTVSFTLPPEDLA 47 (71)
T ss_dssp EEEE-TT-EEEEEEEEEHHHHE
T ss_pred EEEECCCCEEEEEEEECHHHEe
Confidence 4779999999999988765443
No 48
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=22.71 E-value=3.2e+02 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=16.7
Q ss_pred eEeCCCCEEEEEEEEEEeec
Q 036760 280 ITLKPGEEWKGRLELSGVPS 299 (315)
Q Consensus 280 ~~L~PGe~~~~~~~i~~~~~ 299 (315)
-.|+||++.+..+.|-|..+
T Consensus 124 ~~L~pg~s~t~~lgIDF~DS 143 (145)
T PF14796_consen 124 ESLEPGASVTVSLGIDFNDS 143 (145)
T ss_pred cccCCCCeEEEEEEEecccC
Confidence 57999999999998887643
No 49
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=22.16 E-value=28 Score=25.39 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=17.5
Q ss_pred ceEEEceeeecCceEeCCCCEEE
Q 036760 267 HMLCVEAAAVEKPITLKPGEEWK 289 (315)
Q Consensus 267 ~fvCvEP~~~~~~~~L~PGe~~~ 289 (315)
.|-|+++.+. .++|.|||.|+
T Consensus 57 YF~tLp~nT~--l~~l~~gq~W~ 77 (78)
T cd01615 57 YFQTLPDNTV--LMLLEPGQKWT 77 (78)
T ss_pred HHhcCCCCcE--EEEECCCCCcC
Confidence 5789998874 68999999985
No 50
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.25 E-value=28 Score=25.56 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=17.2
Q ss_pred ceEEEceeeecCceEeCCCCEEE
Q 036760 267 HMLCVEAAAVEKPITLKPGEEWK 289 (315)
Q Consensus 267 ~fvCvEP~~~~~~~~L~PGe~~~ 289 (315)
.|-|+++.+. .+.|.|||+|+
T Consensus 59 yF~tLp~nT~--l~~L~~gq~W~ 79 (80)
T cd06536 59 YFLCLPPNTK--FVLLAENEKWA 79 (80)
T ss_pred HHhhCCCCcE--EEEECCCCccC
Confidence 5778888873 68999999985
No 51
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=20.92 E-value=6e+02 Score=22.63 Aligned_cols=54 Identities=24% Similarity=0.317 Sum_probs=34.4
Q ss_pred ceEEEEEeCCCcchhccCCcceEEEE-EEEECCCCcEEEEEEEEeCCCCCccEEEeeec
Q 036760 110 KAYIDLILRPSEEDLKIWPHSFEFRL-RVALTPGGDLMLISRVRNTSTDGKPFSFTFAY 167 (315)
Q Consensus 110 ~~~v~l~l~~~~~~~~~~P~~f~~~~-ty~L~~~~~L~i~~~v~N~n~~~~~~p~~~g~ 167 (315)
.-.|++++..+ ...+-||.|+-.+ .+++.....-.+.|+++|. +++++.-....
T Consensus 106 ~R~I~V~F~a~--v~~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~--sd~~i~G~A~y 160 (232)
T PTZ00128 106 KRLIKIRFLAD--TGSTMPWEFEPLQKEVEVLPGETALAFYRAKNR--SDKPVIGVATY 160 (232)
T ss_pred ceEEEEEEecc--CCCCCCceEEeeeeEEEEcCCCeEEEEEEEECC--CCCcEEEEEec
Confidence 34566666543 3456788887533 3344443456678999999 99998755543
Done!