Query 036761
Match_columns 897
No_of_seqs 846 out of 4185
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8E-100 2E-104 885.7 51.1 838 16-889 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.2E-64 9E-69 621.3 49.2 631 155-857 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-44 2.9E-49 384.8 17.3 281 160-442 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.2E-23 9.2E-28 257.3 15.5 331 518-872 116-463 (968)
5 PLN03210 Resistant to P. syrin 99.9 1.9E-22 4.2E-27 250.8 18.6 344 501-874 592-968 (1153)
6 KOG0444 Cytoskeletal regulator 99.9 4.7E-25 1E-29 232.1 -4.5 327 501-855 35-379 (1255)
7 PLN00113 leucine-rich repeat r 99.9 2.2E-22 4.8E-27 250.9 15.7 332 517-871 161-509 (968)
8 KOG4194 Membrane glycoprotein 99.9 2.9E-22 6.4E-27 210.2 5.5 345 517-895 99-485 (873)
9 KOG0444 Cytoskeletal regulator 99.8 2.4E-23 5.3E-28 219.3 -5.6 331 515-875 27-376 (1255)
10 KOG4194 Membrane glycoprotein 99.8 2E-21 4.4E-26 204.0 -1.4 269 521-824 150-426 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 1.8E-21 3.8E-26 195.8 -2.2 326 512-849 198-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.5E-20 3.2E-25 189.2 -8.6 332 516-872 87-539 (565)
13 KOG0618 Serine/threonine phosp 99.7 7.4E-19 1.6E-23 195.1 -4.5 235 615-872 242-487 (1081)
14 KOG0618 Serine/threonine phosp 99.7 1.4E-18 3E-23 192.9 -6.2 323 521-871 46-462 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.7E-15 3.6E-20 174.7 13.7 255 500-826 203-457 (788)
16 KOG0617 Ras suppressor protein 99.6 9.2E-18 2E-22 149.6 -4.4 167 510-697 23-192 (264)
17 PRK15387 E3 ubiquitin-protein 99.6 8.6E-15 1.9E-19 168.9 10.3 255 521-849 202-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.5 2.5E-14 5.3E-19 166.4 10.3 113 524-650 182-294 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 1.6E-14 3.4E-19 168.0 8.2 241 506-825 186-426 (754)
20 KOG0617 Ras suppressor protein 99.5 1.6E-15 3.5E-20 135.4 -3.0 161 531-739 22-183 (264)
21 KOG4658 Apoptotic ATPase [Sign 99.5 2.6E-14 5.5E-19 168.9 5.9 318 504-857 529-866 (889)
22 PRK04841 transcriptional regul 99.4 1.2E-11 2.5E-16 154.0 24.6 298 149-487 8-333 (903)
23 KOG4237 Extracellular matrix p 99.4 8.7E-15 1.9E-19 148.0 -4.2 145 503-650 51-199 (498)
24 KOG4237 Extracellular matrix p 99.4 1E-14 2.2E-19 147.6 -4.7 122 528-653 54-178 (498)
25 PRK00411 cdc6 cell division co 99.3 2.2E-10 4.7E-15 127.7 25.0 296 155-467 30-358 (394)
26 cd00116 LRR_RI Leucine-rich re 99.3 1.6E-12 3.4E-17 140.9 2.9 36 753-789 219-261 (319)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.9E-09 4.2E-14 113.3 23.9 181 174-362 41-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.2 6.9E-11 1.5E-15 121.7 12.3 195 157-357 1-233 (234)
29 KOG4341 F-box protein containi 99.2 8.5E-13 1.8E-17 135.0 -2.0 302 543-895 139-462 (483)
30 cd00116 LRR_RI Leucine-rich re 99.2 4E-12 8.6E-17 137.8 2.9 214 563-791 47-291 (319)
31 TIGR02928 orc1/cdc6 family rep 99.2 3.2E-09 7E-14 117.0 25.4 295 155-467 15-350 (365)
32 COG2909 MalT ATP-dependent tra 99.1 2.7E-09 5.9E-14 119.8 18.2 300 146-488 10-340 (894)
33 PF14580 LRR_9: Leucine-rich r 99.1 8.1E-11 1.7E-15 111.5 5.3 114 531-650 8-124 (175)
34 TIGR00635 ruvB Holliday juncti 99.1 9.5E-09 2.1E-13 110.1 20.9 273 155-467 4-289 (305)
35 PRK00080 ruvB Holliday junctio 99.1 2.8E-08 6E-13 107.1 23.2 273 155-467 25-310 (328)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 109.2 4.2 130 515-649 14-150 (175)
37 KOG3207 Beta-tubulin folding c 99.0 9.8E-11 2.1E-15 120.8 1.3 109 539-649 118-232 (505)
38 PF05729 NACHT: NACHT domain 99.0 3.1E-09 6.7E-14 102.8 11.8 142 177-326 1-163 (166)
39 KOG4341 F-box protein containi 98.9 4E-11 8.6E-16 123.0 -3.9 105 521-625 139-253 (483)
40 KOG0532 Leucine-rich repeat (L 98.9 8.4E-11 1.8E-15 125.0 -2.0 169 523-714 101-270 (722)
41 COG3899 Predicted ATPase [Gene 98.9 4E-08 8.7E-13 117.4 17.9 311 156-488 1-388 (849)
42 PRK06893 DNA replication initi 98.9 1.8E-08 3.8E-13 102.2 11.6 153 175-359 38-204 (229)
43 KOG1259 Nischarin, modulator o 98.8 7.6E-10 1.7E-14 108.4 1.0 129 566-741 283-411 (490)
44 PRK13342 recombination factor 98.8 2E-07 4.3E-12 103.6 18.0 175 155-360 12-198 (413)
45 KOG0532 Leucine-rich repeat (L 98.8 1.2E-09 2.5E-14 116.5 0.1 168 522-715 77-245 (722)
46 KOG3207 Beta-tubulin folding c 98.8 2.1E-09 4.5E-14 111.2 1.5 159 518-693 119-286 (505)
47 PRK04195 replication factor C 98.8 2.5E-07 5.5E-12 104.9 18.5 243 155-442 14-272 (482)
48 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.2E-07 2.6E-12 96.8 12.1 173 155-360 15-203 (226)
49 KOG2120 SCF ubiquitin ligase, 98.7 1.6E-09 3.5E-14 106.3 -2.2 84 593-690 187-272 (419)
50 COG4886 Leucine-rich repeat (L 98.7 1.5E-08 3.2E-13 113.1 4.5 177 539-768 113-290 (394)
51 PTZ00112 origin recognition co 98.7 4.9E-07 1.1E-11 102.8 16.2 204 155-362 755-986 (1164)
52 PRK07003 DNA polymerase III su 98.7 6E-07 1.3E-11 101.8 16.7 179 155-360 16-223 (830)
53 COG4886 Leucine-rich repeat (L 98.6 2.4E-08 5.2E-13 111.4 5.2 156 518-694 114-271 (394)
54 COG2256 MGS1 ATPase related to 98.6 2.1E-06 4.5E-11 89.1 18.6 221 155-406 24-266 (436)
55 KOG1259 Nischarin, modulator o 98.6 4.3E-09 9.3E-14 103.2 -0.8 131 516-652 280-412 (490)
56 PRK05564 DNA polymerase III su 98.6 1E-06 2.2E-11 94.3 17.1 176 155-357 4-189 (313)
57 TIGR02903 spore_lon_C ATP-depe 98.6 4.7E-06 1E-10 96.5 23.5 203 155-361 154-398 (615)
58 KOG2120 SCF ubiquitin ligase, 98.6 1.8E-09 4E-14 105.9 -4.6 87 614-715 185-271 (419)
59 PRK12402 replication factor C 98.6 6.6E-07 1.4E-11 97.6 14.7 195 155-357 15-225 (337)
60 PRK14949 DNA polymerase III su 98.6 7.1E-07 1.5E-11 103.3 14.7 180 155-358 16-220 (944)
61 KOG1909 Ran GTPase-activating 98.6 5.1E-08 1.1E-12 98.5 4.3 140 676-824 155-308 (382)
62 PRK14961 DNA polymerase III su 98.6 1.5E-06 3.3E-11 94.6 16.2 189 155-355 16-217 (363)
63 COG1474 CDC6 Cdc6-related prot 98.5 5.6E-06 1.2E-10 89.1 19.4 200 155-358 17-238 (366)
64 PF13173 AAA_14: AAA domain 98.5 2E-07 4.3E-12 85.2 7.1 120 176-318 2-127 (128)
65 PRK00440 rfc replication facto 98.5 1.8E-06 3.9E-11 93.4 15.4 180 155-356 17-201 (319)
66 PRK14960 DNA polymerase III su 98.5 1.4E-06 3E-11 97.9 14.0 191 155-356 15-217 (702)
67 PF05496 RuvB_N: Holliday junc 98.5 8.9E-07 1.9E-11 85.8 10.9 173 153-362 22-225 (233)
68 PRK14963 DNA polymerase III su 98.5 1.9E-06 4E-11 96.9 15.1 191 155-355 14-214 (504)
69 cd00009 AAA The AAA+ (ATPases 98.5 9.7E-07 2.1E-11 83.3 11.0 123 158-297 1-131 (151)
70 PTZ00202 tuzin; Provisional 98.5 9.2E-06 2E-10 85.9 18.7 166 151-326 258-434 (550)
71 cd01128 rho_factor Transcripti 98.5 4.2E-07 9E-12 92.2 8.6 93 174-268 14-114 (249)
72 PRK08727 hypothetical protein; 98.5 1.2E-06 2.6E-11 89.0 12.1 168 155-355 19-201 (233)
73 PRK14962 DNA polymerase III su 98.5 2.6E-06 5.7E-11 94.9 15.7 185 155-362 14-223 (472)
74 PLN03025 replication factor C 98.5 1.5E-06 3.2E-11 93.2 13.3 179 155-354 13-196 (319)
75 PRK12323 DNA polymerase III su 98.5 1.4E-06 3.1E-11 97.5 13.1 196 155-358 16-225 (700)
76 PRK14956 DNA polymerase III su 98.5 2.2E-06 4.8E-11 93.7 14.0 189 155-354 18-218 (484)
77 KOG1909 Ran GTPase-activating 98.4 7.4E-08 1.6E-12 97.3 2.1 116 673-790 180-310 (382)
78 PRK07471 DNA polymerase III su 98.4 6.7E-06 1.4E-10 88.7 17.2 195 154-358 18-238 (365)
79 PF13191 AAA_16: AAA ATPase do 98.4 3.7E-07 8E-12 90.0 7.0 48 156-203 1-51 (185)
80 PRK06645 DNA polymerase III su 98.4 5E-06 1.1E-10 93.0 16.1 193 155-355 21-226 (507)
81 PRK08084 DNA replication initi 98.4 1.7E-06 3.8E-11 88.0 11.5 172 155-358 22-209 (235)
82 PRK07940 DNA polymerase III su 98.4 7.3E-06 1.6E-10 89.1 16.3 186 155-358 5-213 (394)
83 PRK14957 DNA polymerase III su 98.4 4E-06 8.7E-11 94.3 14.7 182 155-360 16-223 (546)
84 PF13855 LRR_8: Leucine rich r 98.4 2.9E-07 6.4E-12 71.5 3.8 56 568-624 2-59 (61)
85 PRK05896 DNA polymerase III su 98.4 4.5E-06 9.7E-11 93.9 14.5 193 155-359 16-222 (605)
86 PF13855 LRR_8: Leucine rich r 98.4 3E-07 6.6E-12 71.4 3.7 60 542-603 1-61 (61)
87 PLN03150 hypothetical protein; 98.4 7.3E-07 1.6E-11 104.2 8.5 105 544-650 420-526 (623)
88 TIGR02397 dnaX_nterm DNA polym 98.4 9.6E-06 2.1E-10 89.1 16.7 180 155-358 14-218 (355)
89 PF13401 AAA_22: AAA domain; P 98.4 7.3E-07 1.6E-11 82.2 6.6 116 175-295 3-125 (131)
90 KOG2028 ATPase related to the 98.4 5.2E-06 1.1E-10 84.3 12.8 174 155-353 138-331 (554)
91 PRK07994 DNA polymerase III su 98.4 3.9E-06 8.5E-11 95.8 13.5 193 155-358 16-220 (647)
92 TIGR00678 holB DNA polymerase 98.3 1.4E-05 3E-10 78.7 15.6 159 166-354 3-187 (188)
93 PRK09112 DNA polymerase III su 98.3 6.3E-06 1.4E-10 88.4 13.9 197 153-359 21-241 (351)
94 PRK13341 recombination factor 98.3 5.3E-06 1.1E-10 97.0 14.0 169 155-353 28-212 (725)
95 PRK14951 DNA polymerase III su 98.3 7.6E-06 1.7E-10 93.4 14.9 194 155-357 16-224 (618)
96 PRK14958 DNA polymerase III su 98.3 6.3E-06 1.4E-10 93.0 13.8 179 155-356 16-218 (509)
97 PRK14964 DNA polymerase III su 98.3 8.3E-06 1.8E-10 90.4 14.3 178 155-355 13-214 (491)
98 COG3903 Predicted ATPase [Gene 98.3 8.1E-07 1.8E-11 92.8 5.8 292 175-488 13-316 (414)
99 PRK08691 DNA polymerase III su 98.3 4.5E-06 9.7E-11 94.8 12.2 178 155-356 16-218 (709)
100 KOG0531 Protein phosphatase 1, 98.3 6.8E-08 1.5E-12 107.8 -2.3 213 541-788 71-287 (414)
101 PRK09087 hypothetical protein; 98.3 1E-05 2.3E-10 81.4 13.3 140 175-358 43-195 (226)
102 PRK14955 DNA polymerase III su 98.3 8.5E-06 1.8E-10 89.9 13.3 196 155-355 16-225 (397)
103 PLN03150 hypothetical protein; 98.2 2.3E-06 5.1E-11 100.0 8.7 83 568-651 419-502 (623)
104 TIGR01242 26Sp45 26S proteasom 98.2 1E-05 2.2E-10 88.5 13.2 171 155-352 122-328 (364)
105 PRK08903 DnaA regulatory inact 98.2 7E-06 1.5E-10 83.6 10.8 172 155-362 18-203 (227)
106 KOG0989 Replication factor C, 98.2 1E-05 2.2E-10 81.0 11.1 181 155-352 36-224 (346)
107 PRK09111 DNA polymerase III su 98.2 1.9E-05 4.1E-10 90.5 14.8 194 155-357 24-232 (598)
108 PRK14970 DNA polymerase III su 98.2 2.8E-05 6.1E-10 85.5 15.9 178 155-355 17-206 (367)
109 PRK14969 DNA polymerase III su 98.2 1.3E-05 2.8E-10 91.1 13.4 181 155-358 16-221 (527)
110 PF14516 AAA_35: AAA-like doma 98.2 0.00024 5.3E-09 76.3 22.5 199 156-365 12-246 (331)
111 PRK14959 DNA polymerase III su 98.2 1.9E-05 4E-10 89.5 14.3 196 155-362 16-225 (624)
112 KOG0531 Protein phosphatase 1, 98.2 2.5E-07 5.5E-12 103.2 -0.7 102 519-625 94-197 (414)
113 KOG1859 Leucine-rich repeat pr 98.2 1E-07 2.2E-12 104.6 -3.8 161 509-691 98-292 (1096)
114 KOG2982 Uncharacterized conser 98.2 5.9E-07 1.3E-11 88.6 1.8 106 680-786 175-287 (418)
115 PRK05642 DNA replication initi 98.2 6.4E-06 1.4E-10 83.7 9.1 151 176-358 45-208 (234)
116 PRK14952 DNA polymerase III su 98.2 3E-05 6.5E-10 88.3 14.9 197 155-362 13-224 (584)
117 PRK09376 rho transcription ter 98.2 4.5E-06 9.7E-11 88.1 7.6 98 167-267 159-266 (416)
118 PRK14954 DNA polymerase III su 98.1 3.3E-05 7.2E-10 88.6 14.7 200 155-358 16-229 (620)
119 PRK07133 DNA polymerase III su 98.1 3.7E-05 8E-10 88.5 14.6 187 155-358 18-220 (725)
120 PRK07764 DNA polymerase III su 98.1 3.5E-05 7.6E-10 91.4 14.7 189 155-355 15-218 (824)
121 TIGR00767 rho transcription te 98.1 1.1E-05 2.4E-10 85.6 9.4 94 174-268 166-266 (415)
122 PRK08451 DNA polymerase III su 98.1 6E-05 1.3E-09 84.5 15.6 176 155-358 14-218 (535)
123 PRK14953 DNA polymerase III su 98.1 6.9E-05 1.5E-09 84.1 16.2 179 155-357 16-219 (486)
124 PRK06305 DNA polymerase III su 98.1 6.9E-05 1.5E-09 83.6 16.0 179 155-358 17-223 (451)
125 COG2255 RuvB Holliday junction 98.1 0.00061 1.3E-08 67.7 20.4 214 155-405 26-278 (332)
126 PRK14087 dnaA chromosomal repl 98.1 2.3E-05 5E-10 87.4 12.1 169 176-361 141-322 (450)
127 PRK14950 DNA polymerase III su 98.1 6.7E-05 1.5E-09 87.0 16.2 193 155-358 16-221 (585)
128 PF00308 Bac_DnaA: Bacterial d 98.1 2.2E-05 4.9E-10 78.7 10.7 159 176-356 34-206 (219)
129 TIGR02881 spore_V_K stage V sp 98.1 3.2E-05 7E-10 80.4 12.0 153 155-328 6-193 (261)
130 PRK14948 DNA polymerase III su 98.1 9.2E-05 2E-09 85.6 16.5 194 155-358 16-222 (620)
131 PRK14971 DNA polymerase III su 98.1 6.7E-05 1.5E-09 86.7 15.4 177 155-355 17-219 (614)
132 TIGR03345 VI_ClpV1 type VI sec 98.1 5.9E-05 1.3E-09 90.7 15.5 179 155-351 187-389 (852)
133 PRK03992 proteasome-activating 98.0 6.7E-05 1.5E-09 82.4 14.7 170 155-351 131-336 (389)
134 KOG2227 Pre-initiation complex 98.0 0.00041 8.8E-09 73.8 19.0 193 154-350 149-360 (529)
135 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 58.7 3.5 34 592-625 2-35 (44)
136 PHA02544 44 clamp loader, smal 98.0 0.00014 3.1E-09 78.3 16.2 145 155-324 21-171 (316)
137 TIGR02880 cbbX_cfxQ probable R 98.0 0.0001 2.2E-09 77.3 14.4 132 178-328 60-210 (284)
138 PRK11331 5-methylcytosine-spec 98.0 4E-05 8.7E-10 82.9 11.3 69 155-225 175-243 (459)
139 PF05621 TniB: Bacterial TniB 98.0 0.00026 5.6E-09 72.4 16.4 190 164-356 46-259 (302)
140 CHL00181 cbbX CbbX; Provisiona 98.0 0.00017 3.6E-09 75.5 15.1 133 177-328 60-211 (287)
141 PRK15386 type III secretion pr 97.9 2.7E-05 5.9E-10 83.2 8.6 63 564-632 49-112 (426)
142 KOG2982 Uncharacterized conser 97.9 1.6E-06 3.5E-11 85.6 -0.5 65 728-794 198-265 (418)
143 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.4E-10 57.2 3.8 40 567-607 1-40 (44)
144 PRK06647 DNA polymerase III su 97.9 0.00021 4.6E-09 81.6 16.0 191 155-356 16-218 (563)
145 TIGR00362 DnaA chromosomal rep 97.9 0.00025 5.5E-09 79.0 16.1 159 176-356 136-308 (405)
146 PRK14088 dnaA chromosomal repl 97.9 8.2E-05 1.8E-09 82.9 12.1 159 176-355 130-302 (440)
147 PTZ00361 26 proteosome regulat 97.9 9.3E-05 2E-09 81.3 12.3 171 155-351 183-388 (438)
148 PRK05563 DNA polymerase III su 97.9 0.0003 6.5E-09 80.8 16.4 189 155-355 16-217 (559)
149 PTZ00454 26S protease regulato 97.9 0.00031 6.7E-09 76.8 15.5 172 155-352 145-351 (398)
150 PRK14965 DNA polymerase III su 97.9 0.00016 3.5E-09 83.3 14.0 194 155-360 16-223 (576)
151 PF05673 DUF815: Protein of un 97.9 0.00054 1.2E-08 67.8 15.4 52 151-202 23-78 (249)
152 TIGR02639 ClpA ATP-dependent C 97.8 0.0001 2.2E-09 88.0 12.5 154 155-326 182-358 (731)
153 KOG1859 Leucine-rich repeat pr 97.8 9.2E-07 2E-11 97.4 -4.6 129 517-651 161-291 (1096)
154 PRK05707 DNA polymerase III su 97.8 0.00039 8.4E-09 74.1 15.0 95 256-358 105-203 (328)
155 PRK15386 type III secretion pr 97.8 3.4E-05 7.3E-10 82.5 6.8 83 518-611 50-135 (426)
156 COG0466 Lon ATP-dependent Lon 97.8 0.0017 3.7E-08 73.0 20.1 158 155-326 323-508 (782)
157 PRK06620 hypothetical protein; 97.8 8.1E-05 1.7E-09 74.3 9.1 133 177-355 45-186 (214)
158 PRK00149 dnaA chromosomal repl 97.8 0.00012 2.6E-09 82.6 11.6 159 176-356 148-320 (450)
159 TIGR00763 lon ATP-dependent pr 97.8 0.0012 2.6E-08 79.5 20.5 158 155-326 320-505 (775)
160 KOG1947 Leucine rich repeat pr 97.8 5.2E-06 1.1E-10 95.7 0.3 36 541-576 187-223 (482)
161 PRK12422 chromosomal replicati 97.8 0.00074 1.6E-08 75.1 16.8 151 177-351 142-306 (445)
162 CHL00095 clpC Clp protease ATP 97.8 0.00011 2.5E-09 88.8 11.1 154 155-325 179-353 (821)
163 PRK14086 dnaA chromosomal repl 97.7 0.00083 1.8E-08 76.0 16.5 158 177-355 315-485 (617)
164 PRK07399 DNA polymerase III su 97.7 0.001 2.2E-08 70.6 16.2 195 155-358 4-221 (314)
165 KOG2543 Origin recognition com 97.7 0.00025 5.5E-09 73.3 11.0 163 155-326 6-193 (438)
166 KOG4579 Leucine-rich repeat (L 97.7 5.8E-06 1.3E-10 72.3 -0.6 107 524-633 31-141 (177)
167 COG1222 RPT1 ATP-dependent 26S 97.7 0.00099 2.1E-08 68.6 14.6 193 157-378 153-392 (406)
168 KOG3665 ZYG-1-like serine/thre 97.6 3E-05 6.5E-10 90.3 3.7 141 541-691 121-263 (699)
169 PRK10865 protein disaggregatio 97.6 0.00039 8.4E-09 84.1 13.0 154 155-326 178-354 (857)
170 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00057 1.2E-08 83.1 14.6 155 155-326 173-349 (852)
171 PRK08769 DNA polymerase III su 97.6 0.0018 3.9E-08 68.3 15.9 180 162-359 11-209 (319)
172 PRK11034 clpA ATP-dependent Cl 97.6 0.00064 1.4E-08 80.2 13.9 155 155-326 186-362 (758)
173 COG3267 ExeA Type II secretory 97.6 0.0052 1.1E-07 60.6 17.2 184 174-361 49-248 (269)
174 TIGR01241 FtsH_fam ATP-depende 97.6 0.0015 3.2E-08 74.8 15.7 171 155-351 55-259 (495)
175 KOG1644 U2-associated snRNP A' 97.6 8.5E-05 1.8E-09 69.8 4.5 101 521-623 43-149 (233)
176 PRK08058 DNA polymerase III su 97.6 0.0014 3.1E-08 70.3 14.6 145 156-325 6-181 (329)
177 PF00004 AAA: ATPase family as 97.5 0.00028 6E-09 64.9 8.0 22 179-200 1-22 (132)
178 KOG2004 Mitochondrial ATP-depe 97.5 0.0029 6.2E-08 70.8 16.7 158 155-326 411-596 (906)
179 KOG3665 ZYG-1-like serine/thre 97.5 6E-05 1.3E-09 87.9 4.0 128 520-651 122-262 (699)
180 COG0593 DnaA ATPase involved i 97.5 0.001 2.2E-08 71.6 12.9 135 175-330 112-261 (408)
181 PRK08116 hypothetical protein; 97.5 0.00015 3.2E-09 75.1 6.3 103 177-296 115-221 (268)
182 PRK06871 DNA polymerase III su 97.5 0.0041 9E-08 65.7 16.7 176 163-355 10-200 (325)
183 TIGR03689 pup_AAA proteasome A 97.5 0.00089 1.9E-08 74.9 11.9 162 155-328 182-380 (512)
184 PRK10787 DNA-binding ATP-depen 97.4 0.0022 4.7E-08 76.5 15.6 158 155-326 322-506 (784)
185 smart00382 AAA ATPases associa 97.4 0.00042 9E-09 64.6 8.0 89 176-270 2-91 (148)
186 TIGR00602 rad24 checkpoint pro 97.4 0.00062 1.3E-08 78.2 10.3 47 154-200 83-134 (637)
187 KOG4579 Leucine-rich repeat (L 97.4 4.5E-05 9.8E-10 66.8 0.7 88 521-611 54-143 (177)
188 PF04665 Pox_A32: Poxvirus A32 97.4 0.00068 1.5E-08 67.7 9.0 36 177-214 14-49 (241)
189 KOG1514 Origin recognition com 97.4 0.0045 9.8E-08 69.4 16.0 196 156-358 397-621 (767)
190 CHL00176 ftsH cell division pr 97.4 0.0024 5.3E-08 74.0 14.8 169 155-350 183-386 (638)
191 PRK10536 hypothetical protein; 97.4 0.00054 1.2E-08 68.7 7.9 55 155-211 55-109 (262)
192 PRK08118 topology modulation p 97.4 0.00035 7.7E-09 66.8 6.4 35 177-211 2-37 (167)
193 COG1373 Predicted ATPase (AAA+ 97.4 0.003 6.5E-08 69.5 14.4 136 160-322 22-163 (398)
194 PF13177 DNA_pol3_delta2: DNA 97.3 0.0016 3.5E-08 62.0 10.5 136 159-314 1-162 (162)
195 COG5238 RNA1 Ran GTPase-activa 97.3 4.4E-05 9.6E-10 74.7 -0.2 113 676-789 155-283 (388)
196 PRK06090 DNA polymerase III su 97.3 0.008 1.7E-07 63.4 16.4 162 163-358 11-201 (319)
197 PF10443 RNA12: RNA12 protein; 97.3 0.0057 1.2E-07 65.6 15.1 199 160-370 1-290 (431)
198 KOG0741 AAA+-type ATPase [Post 97.3 0.0045 9.7E-08 66.8 13.9 144 175-348 537-704 (744)
199 PRK06964 DNA polymerase III su 97.3 0.012 2.6E-07 62.8 17.0 91 256-358 131-225 (342)
200 KOG1947 Leucine rich repeat pr 97.2 0.00013 2.9E-09 84.0 2.3 243 564-831 185-444 (482)
201 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0044 9.6E-08 68.0 13.4 171 155-351 190-395 (802)
202 PRK12608 transcription termina 97.2 0.0019 4.2E-08 68.5 10.6 103 164-267 120-230 (380)
203 PRK07993 DNA polymerase III su 97.2 0.009 2E-07 63.9 15.7 175 163-356 10-202 (334)
204 PRK12377 putative replication 97.2 0.00067 1.4E-08 68.9 6.6 74 175-267 100-173 (248)
205 PRK07261 topology modulation p 97.2 0.00079 1.7E-08 64.8 6.8 65 178-267 2-67 (171)
206 KOG2739 Leucine-rich acidic nu 97.2 0.00019 4.2E-09 70.6 2.5 63 563-625 61-127 (260)
207 COG2812 DnaX DNA polymerase II 97.1 0.0014 3.1E-08 72.7 8.7 186 155-352 16-214 (515)
208 KOG0991 Replication factor C, 97.1 0.0011 2.5E-08 63.5 6.4 67 155-221 27-93 (333)
209 TIGR02639 ClpA ATP-dependent C 97.1 0.0033 7.1E-08 75.4 11.9 101 155-268 454-564 (731)
210 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0048 1E-07 69.2 12.1 173 155-352 228-429 (489)
211 KOG1644 U2-associated snRNP A' 97.1 0.00059 1.3E-08 64.3 4.1 78 544-625 44-124 (233)
212 PRK06835 DNA replication prote 97.0 0.0074 1.6E-07 64.2 12.9 38 176-215 183-220 (329)
213 PRK08181 transposase; Validate 97.0 0.0013 2.8E-08 67.8 6.8 105 169-296 101-209 (269)
214 TIGR02640 gas_vesic_GvpN gas v 97.0 0.011 2.3E-07 61.5 13.7 55 163-224 10-64 (262)
215 PF00448 SRP54: SRP54-type pro 97.0 0.0023 5E-08 62.8 8.2 89 176-266 1-92 (196)
216 TIGR01243 CDC48 AAA family ATP 97.0 0.0049 1.1E-07 74.2 12.6 173 155-353 178-382 (733)
217 KOG2228 Origin recognition com 97.0 0.008 1.7E-07 61.5 11.9 171 155-327 24-220 (408)
218 PRK07952 DNA replication prote 97.0 0.0018 3.9E-08 65.6 7.3 88 163-268 84-173 (244)
219 COG0542 clpA ATP-binding subun 96.9 0.019 4E-07 66.8 15.6 115 155-279 491-617 (786)
220 KOG2123 Uncharacterized conser 96.9 9.5E-05 2.1E-09 72.7 -2.4 100 541-645 18-123 (388)
221 KOG2123 Uncharacterized conser 96.9 0.0001 2.3E-09 72.4 -2.3 77 568-648 20-97 (388)
222 TIGR01243 CDC48 AAA family ATP 96.9 0.015 3.3E-07 69.9 15.3 172 155-352 453-657 (733)
223 PRK04132 replication factor C 96.9 0.014 2.9E-07 69.4 14.1 156 181-357 569-730 (846)
224 PRK06921 hypothetical protein; 96.8 0.0022 4.7E-08 66.3 6.7 39 175-214 116-154 (266)
225 PF01695 IstB_IS21: IstB-like 96.8 0.00061 1.3E-08 65.8 2.3 74 175-268 46-119 (178)
226 KOG0744 AAA+-type ATPase [Post 96.8 0.0033 7.2E-08 63.6 7.2 81 176-268 177-261 (423)
227 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0016 3.5E-08 68.9 5.3 56 156-211 52-118 (361)
228 COG0470 HolB ATPase involved i 96.8 0.0072 1.6E-07 65.5 10.6 141 156-315 2-170 (325)
229 KOG2739 Leucine-rich acidic nu 96.8 0.00084 1.8E-08 66.3 2.6 84 520-605 43-130 (260)
230 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0054 1.2E-07 74.7 9.9 60 155-216 565-633 (852)
231 PRK09183 transposase/IS protei 96.7 0.0035 7.6E-08 64.7 7.1 26 175-200 101-126 (259)
232 PRK10865 protein disaggregatio 96.7 0.011 2.3E-07 71.9 12.2 60 155-216 568-636 (857)
233 PRK06526 transposase; Provisio 96.7 0.0016 3.4E-08 66.8 4.3 27 175-201 97-123 (254)
234 PF13207 AAA_17: AAA domain; P 96.7 0.0013 2.7E-08 59.4 3.3 23 178-200 1-23 (121)
235 PRK08699 DNA polymerase III su 96.7 0.021 4.5E-07 60.9 12.6 25 176-200 21-45 (325)
236 TIGR02012 tigrfam_recA protein 96.7 0.0045 9.8E-08 65.1 7.4 86 175-267 54-143 (321)
237 PRK09361 radB DNA repair and r 96.6 0.0079 1.7E-07 61.1 9.0 46 175-223 22-67 (225)
238 COG2607 Predicted ATPase (AAA+ 96.6 0.0077 1.7E-07 58.6 8.1 49 153-201 58-110 (287)
239 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.011 2.3E-07 60.7 10.0 92 175-267 18-125 (235)
240 PF14532 Sigma54_activ_2: Sigm 96.6 0.0013 2.9E-08 60.8 2.9 43 158-200 1-45 (138)
241 cd00983 recA RecA is a bacter 96.6 0.0046 1E-07 65.0 7.2 86 175-267 54-143 (325)
242 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0048 1E-07 74.6 8.3 46 155-200 566-620 (852)
243 COG1223 Predicted ATPase (AAA+ 96.6 0.036 7.8E-07 54.6 12.4 169 155-351 121-318 (368)
244 KOG1969 DNA replication checkp 96.6 0.0052 1.1E-07 69.1 7.5 72 175-268 325-398 (877)
245 PRK09354 recA recombinase A; P 96.6 0.006 1.3E-07 64.7 7.7 86 175-267 59-148 (349)
246 PRK08939 primosomal protein Dn 96.6 0.0049 1.1E-07 65.0 7.1 116 159-295 135-260 (306)
247 PRK12727 flagellar biosynthesi 96.6 0.07 1.5E-06 59.5 16.1 89 175-267 349-438 (559)
248 PF07693 KAP_NTPase: KAP famil 96.6 0.069 1.5E-06 57.7 16.3 44 160-203 1-47 (325)
249 TIGR02237 recomb_radB DNA repa 96.6 0.0073 1.6E-07 60.6 8.0 48 175-225 11-58 (209)
250 KOG0730 AAA+-type ATPase [Post 96.6 0.1 2.2E-06 58.6 17.1 165 156-342 435-631 (693)
251 cd01393 recA_like RecA is a b 96.5 0.019 4.2E-07 58.3 11.2 92 175-267 18-124 (226)
252 CHL00095 clpC Clp protease ATP 96.5 0.0039 8.5E-08 75.7 6.9 104 155-268 509-622 (821)
253 PF03215 Rad17: Rad17 cell cyc 96.5 0.01 2.2E-07 67.1 9.3 56 155-214 19-79 (519)
254 COG1484 DnaC DNA replication p 96.5 0.01 2.2E-07 60.9 8.7 91 159-268 87-178 (254)
255 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.018 3.9E-07 53.8 9.3 117 177-297 3-139 (159)
256 COG2884 FtsE Predicted ATPase 96.5 0.012 2.6E-07 55.2 8.0 126 174-303 26-204 (223)
257 KOG0728 26S proteasome regulat 96.4 0.14 3.1E-06 50.0 15.2 180 157-361 148-366 (404)
258 PRK06762 hypothetical protein; 96.4 0.025 5.5E-07 54.2 10.6 25 176-200 2-26 (166)
259 PRK15455 PrkA family serine pr 96.4 0.0036 7.8E-08 69.6 5.1 46 155-200 76-127 (644)
260 cd01394 radB RadB. The archaea 96.4 0.022 4.8E-07 57.5 10.6 43 175-219 18-60 (218)
261 PF08423 Rad51: Rad51; InterP 96.4 0.022 4.8E-07 58.6 10.4 91 175-266 37-142 (256)
262 KOG0733 Nuclear AAA ATPase (VC 96.4 0.086 1.9E-06 58.4 14.8 153 175-351 544-717 (802)
263 PRK06696 uridine kinase; Valid 96.4 0.0046 1E-07 62.5 5.2 43 159-201 2-47 (223)
264 cd01133 F1-ATPase_beta F1 ATP 96.4 0.014 3E-07 59.7 8.5 92 174-267 67-173 (274)
265 TIGR01425 SRP54_euk signal rec 96.3 0.22 4.7E-06 54.8 17.9 27 175-201 99-125 (429)
266 PRK05541 adenylylsulfate kinas 96.3 0.011 2.5E-07 57.3 7.4 36 175-212 6-41 (176)
267 PRK04296 thymidine kinase; Pro 96.3 0.0057 1.2E-07 60.0 5.2 113 177-297 3-117 (190)
268 TIGR02238 recomb_DMC1 meiotic 96.3 0.03 6.4E-07 59.3 10.8 91 175-266 95-200 (313)
269 TIGR03499 FlhF flagellar biosy 96.2 0.02 4.3E-07 60.0 9.1 88 175-266 193-281 (282)
270 cd01120 RecA-like_NTPases RecA 96.2 0.022 4.7E-07 54.4 8.8 40 178-219 1-40 (165)
271 PRK05800 cobU adenosylcobinami 96.2 0.0027 5.9E-08 60.7 2.4 83 177-266 2-85 (170)
272 PRK11034 clpA ATP-dependent Cl 96.2 0.0073 1.6E-07 71.5 6.3 46 155-200 458-512 (758)
273 PRK00771 signal recognition pa 96.2 0.029 6.4E-07 62.0 10.6 89 175-266 94-184 (437)
274 KOG0736 Peroxisome assembly fa 96.2 0.2 4.3E-06 57.3 16.7 169 155-349 672-876 (953)
275 COG0542 clpA ATP-binding subun 96.1 0.044 9.5E-07 63.8 11.8 157 155-326 170-346 (786)
276 PRK07132 DNA polymerase III su 96.1 0.21 4.6E-06 52.4 15.8 166 164-357 5-184 (299)
277 TIGR00959 ffh signal recogniti 96.1 0.024 5.3E-07 62.4 9.3 92 175-267 98-192 (428)
278 KOG0734 AAA+-type ATPase conta 96.1 0.017 3.6E-07 62.6 7.6 46 156-201 305-362 (752)
279 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.04 8.7E-07 56.3 10.3 49 175-227 20-68 (237)
280 PRK10867 signal recognition pa 96.0 0.025 5.4E-07 62.3 9.2 28 174-201 98-125 (433)
281 KOG2035 Replication factor C, 96.0 0.21 4.6E-06 50.0 14.4 209 155-381 13-261 (351)
282 COG0464 SpoVK ATPases of the A 96.0 0.083 1.8E-06 60.7 13.9 151 156-329 243-426 (494)
283 cd01131 PilT Pilus retraction 96.0 0.0083 1.8E-07 59.3 4.9 109 177-298 2-111 (198)
284 COG1618 Predicted nucleotide k 96.0 0.007 1.5E-07 55.2 3.8 28 176-203 5-32 (179)
285 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.6E-08 37.4 0.8 19 593-611 2-20 (22)
286 PRK13531 regulatory ATPase Rav 96.0 0.018 3.8E-07 63.5 7.7 51 155-207 20-70 (498)
287 COG0572 Udk Uridine kinase [Nu 96.0 0.018 4E-07 56.2 7.0 79 175-258 7-85 (218)
288 cd03115 SRP The signal recogni 96.0 0.022 4.8E-07 55.0 7.7 88 178-267 2-92 (173)
289 KOG0735 AAA+-type ATPase [Post 96.0 0.015 3.3E-07 65.1 7.1 73 175-267 430-504 (952)
290 PLN03187 meiotic recombination 96.0 0.032 6.9E-07 59.6 9.3 59 175-234 125-187 (344)
291 cd03238 ABC_UvrA The excision 96.0 0.034 7.5E-07 53.5 8.8 123 175-310 20-161 (176)
292 COG5238 RNA1 Ran GTPase-activa 96.0 0.012 2.7E-07 58.1 5.6 189 587-788 88-313 (388)
293 cd01121 Sms Sms (bacterial rad 96.0 0.035 7.6E-07 60.2 9.7 84 175-266 81-167 (372)
294 PRK04301 radA DNA repair and r 95.9 0.064 1.4E-06 57.5 11.5 58 175-233 101-162 (317)
295 PRK06547 hypothetical protein; 95.9 0.011 2.3E-07 56.8 5.0 34 167-200 6-39 (172)
296 PRK14722 flhF flagellar biosyn 95.9 0.029 6.2E-07 60.4 8.7 89 175-267 136-225 (374)
297 PRK10733 hflB ATP-dependent me 95.9 0.069 1.5E-06 62.9 12.7 170 156-351 153-356 (644)
298 TIGR02239 recomb_RAD51 DNA rep 95.9 0.049 1.1E-06 57.9 10.3 59 175-234 95-157 (316)
299 cd00544 CobU Adenosylcobinamid 95.9 0.019 4.2E-07 54.7 6.5 39 178-221 1-39 (169)
300 PF13306 LRR_5: Leucine rich r 95.9 0.017 3.7E-07 52.7 5.9 102 538-647 8-111 (129)
301 PRK06067 flagellar accessory p 95.8 0.052 1.1E-06 55.5 10.0 88 175-267 24-130 (234)
302 COG1102 Cmk Cytidylate kinase 95.8 0.027 5.8E-07 51.5 6.7 45 178-235 2-46 (179)
303 PF10236 DAP3: Mitochondrial r 95.8 0.23 5E-06 52.7 15.1 49 307-355 258-306 (309)
304 PF13306 LRR_5: Leucine rich r 95.8 0.019 4.2E-07 52.3 6.1 115 519-642 11-129 (129)
305 COG1875 NYN ribonuclease and A 95.8 0.02 4.2E-07 59.4 6.5 51 159-210 228-280 (436)
306 PF00485 PRK: Phosphoribulokin 95.7 0.047 1E-06 53.9 8.9 82 178-261 1-87 (194)
307 KOG0727 26S proteasome regulat 95.7 2.4 5.2E-05 41.9 21.3 45 156-200 156-213 (408)
308 PLN00020 ribulose bisphosphate 95.7 0.033 7E-07 58.8 7.7 27 174-200 146-172 (413)
309 PRK11889 flhF flagellar biosyn 95.7 0.05 1.1E-06 58.2 9.1 89 175-267 240-330 (436)
310 PHA00729 NTP-binding motif con 95.7 0.014 2.9E-07 57.9 4.7 34 167-200 8-41 (226)
311 COG4608 AppF ABC-type oligopep 95.7 0.049 1.1E-06 54.8 8.6 126 174-304 37-178 (268)
312 PRK04328 hypothetical protein; 95.7 0.049 1.1E-06 56.0 9.0 41 175-217 22-62 (249)
313 COG1066 Sms Predicted ATP-depe 95.7 0.069 1.5E-06 56.6 9.9 94 165-267 80-178 (456)
314 COG0541 Ffh Signal recognition 95.7 1 2.2E-05 48.7 18.6 58 175-235 99-158 (451)
315 TIGR00708 cobA cob(I)alamin ad 95.7 0.071 1.5E-06 50.5 9.2 117 176-297 5-141 (173)
316 PF13238 AAA_18: AAA domain; P 95.7 0.0085 1.8E-07 54.6 3.0 22 179-200 1-22 (129)
317 KOG0729 26S proteasome regulat 95.6 0.1 2.2E-06 51.5 10.4 45 156-200 178-235 (435)
318 cd03247 ABCC_cytochrome_bd The 95.6 0.047 1E-06 53.0 8.4 127 175-310 27-169 (178)
319 PRK10463 hydrogenase nickel in 95.6 0.039 8.4E-07 56.9 7.8 96 167-268 95-195 (290)
320 KOG0731 AAA+-type ATPase conta 95.6 0.27 6E-06 57.0 15.2 175 155-355 311-521 (774)
321 TIGR03881 KaiC_arch_4 KaiC dom 95.6 0.097 2.1E-06 53.2 10.9 41 175-217 19-59 (229)
322 PRK09270 nucleoside triphospha 95.6 0.016 3.4E-07 58.9 5.0 28 174-201 31-58 (229)
323 PF07728 AAA_5: AAA domain (dy 95.6 0.025 5.5E-07 52.4 5.9 43 179-226 2-44 (139)
324 cd02019 NK Nucleoside/nucleoti 95.6 0.0099 2.1E-07 47.2 2.7 23 178-200 1-23 (69)
325 COG0468 RecA RecA/RadA recombi 95.6 0.062 1.3E-06 55.3 9.1 90 175-267 59-151 (279)
326 KOG0652 26S proteasome regulat 95.6 0.15 3.3E-06 50.1 11.1 53 148-200 161-229 (424)
327 PRK07667 uridine kinase; Provi 95.5 0.018 3.9E-07 56.7 4.9 37 165-201 4-42 (193)
328 cd03246 ABCC_Protease_Secretio 95.5 0.043 9.3E-07 53.0 7.5 26 175-200 27-52 (173)
329 PRK12723 flagellar biosynthesi 95.5 0.067 1.4E-06 58.2 9.5 89 175-267 173-264 (388)
330 TIGR02236 recomb_radA DNA repa 95.5 0.076 1.6E-06 56.8 10.0 58 175-233 94-155 (310)
331 cd03216 ABC_Carb_Monos_I This 95.5 0.022 4.9E-07 54.3 5.3 114 175-298 25-144 (163)
332 cd03222 ABC_RNaseL_inhibitor T 95.5 0.033 7.1E-07 53.7 6.4 27 174-200 23-49 (177)
333 PF00154 RecA: recA bacterial 95.5 0.075 1.6E-06 55.9 9.5 87 175-268 52-142 (322)
334 PRK12726 flagellar biosynthesi 95.5 0.073 1.6E-06 56.8 9.4 89 175-267 205-295 (407)
335 PRK08233 hypothetical protein; 95.5 0.012 2.7E-07 57.4 3.6 25 176-200 3-27 (182)
336 TIGR00064 ftsY signal recognit 95.5 0.069 1.5E-06 55.5 9.2 91 174-267 70-164 (272)
337 COG4088 Predicted nucleotide k 95.4 0.014 3.1E-07 55.3 3.6 25 177-201 2-26 (261)
338 cd03223 ABCD_peroxisomal_ALDP 95.4 0.089 1.9E-06 50.4 9.4 115 175-299 26-151 (166)
339 cd01124 KaiC KaiC is a circadi 95.4 0.057 1.2E-06 52.9 8.3 45 178-226 1-45 (187)
340 PRK12724 flagellar biosynthesi 95.4 0.053 1.1E-06 58.8 8.4 25 176-200 223-247 (432)
341 PF13671 AAA_33: AAA domain; P 95.4 0.013 2.8E-07 54.6 3.4 23 178-200 1-23 (143)
342 cd03228 ABCC_MRP_Like The MRP 95.4 0.06 1.3E-06 51.9 8.1 127 174-310 26-167 (171)
343 PLN03186 DNA repair protein RA 95.4 0.1 2.2E-06 55.8 10.5 59 175-234 122-184 (342)
344 PRK14974 cell division protein 95.4 0.1 2.2E-06 55.7 10.2 90 175-267 139-232 (336)
345 COG1136 SalX ABC-type antimicr 95.3 0.025 5.4E-07 55.9 5.2 124 174-302 29-209 (226)
346 TIGR01069 mutS2 MutS2 family p 95.3 0.12 2.6E-06 61.9 11.9 25 175-199 321-345 (771)
347 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.06 1.3E-06 50.1 7.5 105 174-300 24-131 (144)
348 cd01129 PulE-GspE PulE/GspE Th 95.3 0.042 9E-07 56.9 7.0 105 158-274 62-166 (264)
349 cd02027 APSK Adenosine 5'-phos 95.3 0.082 1.8E-06 49.5 8.4 24 178-201 1-24 (149)
350 TIGR00390 hslU ATP-dependent p 95.3 0.042 9.2E-07 59.3 7.1 46 155-200 12-71 (441)
351 PTZ00035 Rad51 protein; Provis 95.3 0.18 3.8E-06 54.2 11.9 58 175-233 117-178 (337)
352 PRK05917 DNA polymerase III su 95.3 0.4 8.7E-06 49.7 13.9 38 163-200 5-43 (290)
353 PF00158 Sigma54_activat: Sigm 95.3 0.084 1.8E-06 50.4 8.4 68 157-227 1-70 (168)
354 PF12775 AAA_7: P-loop contain 95.3 0.029 6.2E-07 58.3 5.7 57 165-224 23-79 (272)
355 PF03308 ArgK: ArgK protein; 95.3 0.031 6.6E-07 55.9 5.5 63 164-226 15-79 (266)
356 PRK05480 uridine/cytidine kina 95.2 0.017 3.7E-07 57.9 3.9 27 174-200 4-30 (209)
357 KOG0743 AAA+-type ATPase [Post 95.2 0.49 1.1E-05 51.1 14.7 149 177-364 236-416 (457)
358 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.083 1.8E-06 54.7 8.9 40 175-216 35-74 (259)
359 cd03214 ABC_Iron-Siderophores_ 95.2 0.07 1.5E-06 51.9 7.9 120 175-299 24-161 (180)
360 PF06745 KaiC: KaiC; InterPro 95.2 0.033 7.1E-07 56.6 5.8 89 175-267 18-125 (226)
361 PRK05986 cob(I)alamin adenolsy 95.2 0.12 2.7E-06 49.6 9.2 119 175-297 21-159 (191)
362 PRK09519 recA DNA recombinatio 95.2 0.052 1.1E-06 63.8 8.0 86 175-267 59-148 (790)
363 KOG0739 AAA+-type ATPase [Post 95.2 0.43 9.2E-06 48.3 13.0 91 155-268 133-236 (439)
364 PTZ00301 uridine kinase; Provi 95.1 0.018 3.8E-07 57.1 3.5 25 176-200 3-27 (210)
365 COG1428 Deoxynucleoside kinase 95.1 0.035 7.6E-07 53.5 5.3 48 176-228 4-51 (216)
366 TIGR00150 HI0065_YjeE ATPase, 95.1 0.034 7.4E-07 50.2 5.0 39 163-201 7-47 (133)
367 COG0563 Adk Adenylate kinase a 95.1 0.033 7.1E-07 53.6 5.2 24 178-201 2-25 (178)
368 TIGR00235 udk uridine kinase. 95.1 0.019 4E-07 57.4 3.6 26 175-200 5-30 (207)
369 TIGR00554 panK_bact pantothena 95.1 0.12 2.6E-06 53.8 9.7 27 174-200 60-86 (290)
370 COG1703 ArgK Putative periplas 95.1 0.024 5.1E-07 57.5 4.2 65 165-229 38-104 (323)
371 PTZ00088 adenylate kinase 1; P 95.1 0.024 5.3E-07 57.0 4.4 23 178-200 8-30 (229)
372 PRK13765 ATP-dependent proteas 95.1 0.036 7.8E-07 64.2 6.3 75 154-232 30-104 (637)
373 PF01583 APS_kinase: Adenylyls 95.1 0.023 5E-07 52.9 3.8 35 176-212 2-36 (156)
374 PF00006 ATP-synt_ab: ATP synt 95.1 0.11 2.5E-06 51.5 9.0 87 175-267 14-115 (215)
375 PRK08533 flagellar accessory p 95.0 0.15 3.3E-06 51.6 10.0 53 175-232 23-75 (230)
376 PRK08972 fliI flagellum-specif 95.0 0.06 1.3E-06 58.9 7.4 90 175-268 161-263 (444)
377 PRK05703 flhF flagellar biosyn 95.0 0.072 1.6E-06 59.1 8.3 87 176-266 221-308 (424)
378 PF00560 LRR_1: Leucine Rich R 95.0 0.012 2.6E-07 34.5 1.2 22 568-590 1-22 (22)
379 TIGR01360 aden_kin_iso1 adenyl 95.0 0.019 4.1E-07 56.4 3.4 26 175-200 2-27 (188)
380 PRK11823 DNA repair protein Ra 95.0 0.077 1.7E-06 59.4 8.4 84 175-266 79-165 (446)
381 KOG3864 Uncharacterized conser 95.0 0.0029 6.3E-08 59.9 -2.3 40 777-827 150-189 (221)
382 PF00910 RNA_helicase: RNA hel 95.0 0.015 3.2E-07 50.9 2.3 23 179-201 1-23 (107)
383 TIGR02030 BchI-ChlI magnesium 95.0 0.037 8.1E-07 59.1 5.6 47 154-200 3-49 (337)
384 cd03230 ABC_DR_subfamily_A Thi 95.0 0.037 8E-07 53.5 5.2 119 175-300 25-159 (173)
385 PRK03839 putative kinase; Prov 95.0 0.019 4.1E-07 56.0 3.1 23 178-200 2-24 (180)
386 PF08433 KTI12: Chromatin asso 95.0 0.052 1.1E-06 56.1 6.5 25 177-201 2-26 (270)
387 cd02025 PanK Pantothenate kina 94.9 0.096 2.1E-06 52.6 8.2 24 178-201 1-24 (220)
388 PF07726 AAA_3: ATPase family 94.9 0.014 3.1E-07 51.7 1.9 27 179-207 2-28 (131)
389 COG4618 ArpD ABC-type protease 94.9 0.04 8.8E-07 59.8 5.5 27 174-200 360-386 (580)
390 KOG3347 Predicted nucleotide k 94.9 0.035 7.6E-07 49.8 4.2 103 176-301 7-109 (176)
391 PRK13407 bchI magnesium chelat 94.9 0.03 6.5E-07 59.7 4.6 48 153-200 6-53 (334)
392 PF13481 AAA_25: AAA domain; P 94.9 0.11 2.5E-06 51.1 8.6 42 176-217 32-81 (193)
393 PF07724 AAA_2: AAA domain (Cd 94.9 0.024 5.3E-07 54.2 3.5 43 176-219 3-45 (171)
394 PF06309 Torsin: Torsin; Inte 94.8 0.045 9.7E-07 48.4 4.8 45 156-200 26-77 (127)
395 PTZ00494 tuzin-like protein; P 94.8 1.7 3.7E-05 47.0 17.0 162 155-326 371-544 (664)
396 PRK04040 adenylate kinase; Pro 94.8 0.024 5.1E-07 55.4 3.4 25 176-200 2-26 (188)
397 cd01135 V_A-ATPase_B V/A-type 94.8 0.15 3.2E-06 52.2 9.0 95 174-268 67-177 (276)
398 COG1419 FlhF Flagellar GTP-bin 94.8 0.24 5.3E-06 53.0 10.9 87 175-266 202-290 (407)
399 CHL00081 chlI Mg-protoporyphyr 94.8 0.03 6.6E-07 59.7 4.3 46 155-200 17-62 (350)
400 PRK05973 replicative DNA helic 94.8 0.16 3.5E-06 51.1 9.2 50 174-227 62-111 (237)
401 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.057 1.2E-06 51.2 5.8 116 175-301 24-145 (157)
402 TIGR00764 lon_rel lon-related 94.7 0.078 1.7E-06 61.8 7.9 75 154-232 17-91 (608)
403 PF03205 MobB: Molybdopterin g 94.7 0.037 8E-07 51.0 4.3 39 177-216 1-39 (140)
404 TIGR00416 sms DNA repair prote 94.7 0.14 3E-06 57.5 9.5 40 175-216 93-132 (454)
405 COG3640 CooC CO dehydrogenase 94.7 0.052 1.1E-06 53.0 5.2 50 178-235 2-51 (255)
406 PRK00625 shikimate kinase; Pro 94.7 0.024 5.2E-07 54.4 3.0 23 178-200 2-24 (173)
407 TIGR03574 selen_PSTK L-seryl-t 94.6 0.054 1.2E-06 55.9 5.8 24 178-201 1-24 (249)
408 PRK05201 hslU ATP-dependent pr 94.6 0.075 1.6E-06 57.5 6.8 46 155-200 15-74 (443)
409 PF08298 AAA_PrkA: PrkA AAA do 94.6 0.046 1E-06 57.4 5.1 46 155-200 61-112 (358)
410 TIGR01359 UMP_CMP_kin_fam UMP- 94.6 0.022 4.8E-07 55.7 2.7 23 178-200 1-23 (183)
411 TIGR03575 selen_PSTK_euk L-ser 94.6 0.18 3.8E-06 53.8 9.4 23 179-201 2-24 (340)
412 KOG0738 AAA+-type ATPase [Post 94.6 0.27 5.8E-06 51.7 10.2 46 155-200 212-269 (491)
413 PF00625 Guanylate_kin: Guanyl 94.6 0.045 9.8E-07 53.4 4.7 37 176-214 2-38 (183)
414 PRK14721 flhF flagellar biosyn 94.5 0.19 4.1E-06 55.1 9.8 61 175-235 190-251 (420)
415 PF02562 PhoH: PhoH-like prote 94.5 0.038 8.2E-07 54.1 4.0 52 160-213 5-56 (205)
416 TIGR02655 circ_KaiC circadian 94.5 0.21 4.6E-06 56.9 10.6 96 166-266 251-362 (484)
417 KOG1051 Chaperone HSP104 and r 94.5 0.14 3E-06 60.7 9.1 101 155-268 562-671 (898)
418 PF13504 LRR_7: Leucine rich r 94.5 0.024 5.3E-07 30.7 1.4 16 592-607 2-17 (17)
419 PRK12597 F0F1 ATP synthase sub 94.5 0.14 2.9E-06 56.9 8.5 93 174-267 141-247 (461)
420 PRK00131 aroK shikimate kinase 94.5 0.033 7.1E-07 53.9 3.5 26 175-200 3-28 (175)
421 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.1 2.2E-06 51.8 7.0 25 175-199 25-49 (200)
422 TIGR02858 spore_III_AA stage I 94.4 0.34 7.3E-06 50.1 10.8 115 174-299 109-232 (270)
423 PRK05439 pantothenate kinase; 94.4 0.27 5.9E-06 51.6 10.2 27 174-200 84-110 (311)
424 COG0467 RAD55 RecA-superfamily 94.4 0.08 1.7E-06 55.0 6.4 51 174-228 21-71 (260)
425 cd02023 UMPK Uridine monophosp 94.4 0.028 6E-07 55.8 2.8 23 178-200 1-23 (198)
426 COG1936 Predicted nucleotide k 94.4 0.03 6.6E-07 52.0 2.8 20 178-197 2-21 (180)
427 PRK10751 molybdopterin-guanine 94.4 0.036 7.9E-07 52.6 3.4 27 175-201 5-31 (173)
428 PRK15429 formate hydrogenlyase 94.4 0.098 2.1E-06 62.6 7.9 60 155-216 376-437 (686)
429 cd02024 NRK1 Nicotinamide ribo 94.4 0.028 6.1E-07 54.4 2.7 23 178-200 1-23 (187)
430 PRK13543 cytochrome c biogenes 94.4 0.2 4.3E-06 50.3 9.0 28 174-201 35-62 (214)
431 PRK06002 fliI flagellum-specif 94.3 0.2 4.4E-06 55.1 9.4 90 174-267 163-264 (450)
432 COG1124 DppF ABC-type dipeptid 94.3 0.055 1.2E-06 53.3 4.5 27 174-200 31-57 (252)
433 TIGR02902 spore_lonB ATP-depen 94.3 0.063 1.4E-06 61.7 5.8 45 155-199 65-109 (531)
434 PRK06217 hypothetical protein; 94.3 0.033 7.1E-07 54.4 3.0 34 177-211 2-37 (183)
435 TIGR02322 phosphon_PhnN phosph 94.3 0.036 7.8E-07 53.9 3.3 24 177-200 2-25 (179)
436 PRK10416 signal recognition pa 94.3 0.22 4.7E-06 53.0 9.3 27 175-201 113-139 (318)
437 PRK12678 transcription termina 94.3 0.12 2.6E-06 57.7 7.5 93 174-267 414-513 (672)
438 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.031 6.7E-07 55.9 2.8 23 176-198 29-51 (213)
439 cd00227 CPT Chloramphenicol (C 94.2 0.039 8.5E-07 53.4 3.4 25 176-200 2-26 (175)
440 PRK06995 flhF flagellar biosyn 94.2 0.18 4E-06 56.2 9.0 59 176-234 256-315 (484)
441 KOG1532 GTPase XAB1, interacts 94.2 0.047 1E-06 54.2 3.8 60 175-234 18-86 (366)
442 cd00071 GMPK Guanosine monopho 94.2 0.041 8.9E-07 50.6 3.2 23 178-200 1-23 (137)
443 PF12061 DUF3542: Protein of u 94.2 0.098 2.1E-06 52.9 5.9 73 15-95 301-373 (402)
444 cd02021 GntK Gluconate kinase 94.1 0.035 7.5E-07 52.2 2.7 23 178-200 1-23 (150)
445 KOG1970 Checkpoint RAD17-RFC c 94.1 0.21 4.7E-06 54.8 8.8 48 161-212 88-142 (634)
446 PRK08149 ATP synthase SpaL; Va 94.1 0.26 5.5E-06 54.2 9.6 90 174-267 149-251 (428)
447 PF06414 Zeta_toxin: Zeta toxi 94.1 0.081 1.8E-06 52.4 5.4 91 174-268 13-103 (199)
448 PF13245 AAA_19: Part of AAA d 94.1 0.087 1.9E-06 42.5 4.6 26 175-200 9-35 (76)
449 cd02020 CMPK Cytidine monophos 94.1 0.035 7.5E-07 52.0 2.6 23 178-200 1-23 (147)
450 PRK08927 fliI flagellum-specif 94.1 0.15 3.2E-06 56.1 7.7 90 174-267 156-258 (442)
451 COG3598 RepA RecA-family ATPas 94.1 0.17 3.8E-06 51.7 7.5 60 177-236 90-158 (402)
452 cd02028 UMPK_like Uridine mono 94.1 0.037 8.1E-07 53.6 2.8 24 178-201 1-24 (179)
453 PRK09280 F0F1 ATP synthase sub 94.0 0.21 4.6E-06 55.2 8.9 93 174-267 142-248 (463)
454 KOG0726 26S proteasome regulat 94.0 0.68 1.5E-05 46.7 11.4 45 156-200 186-243 (440)
455 PRK05922 type III secretion sy 94.0 0.17 3.6E-06 55.6 8.0 91 174-268 155-258 (434)
456 PRK07276 DNA polymerase III su 94.0 1.6 3.5E-05 45.5 14.8 66 256-323 103-172 (290)
457 PF03193 DUF258: Protein of un 94.0 0.078 1.7E-06 49.6 4.7 35 163-200 25-59 (161)
458 TIGR00665 DnaB replicative DNA 94.0 4.6 9.9E-05 45.5 20.0 54 175-231 194-247 (434)
459 COG0396 sufC Cysteine desulfur 94.0 0.21 4.5E-06 48.8 7.6 59 247-308 152-216 (251)
460 PRK13947 shikimate kinase; Pro 94.0 0.043 9.3E-07 52.9 3.1 23 178-200 3-25 (171)
461 PRK00889 adenylylsulfate kinas 93.9 0.056 1.2E-06 52.4 3.8 27 175-201 3-29 (175)
462 PF08477 Miro: Miro-like prote 93.9 0.051 1.1E-06 48.6 3.3 23 179-201 2-24 (119)
463 COG0465 HflB ATP-dependent Zn 93.9 0.48 1E-05 53.9 11.5 173 155-354 150-357 (596)
464 TIGR00073 hypB hydrogenase acc 93.9 0.056 1.2E-06 54.0 3.9 31 170-200 16-46 (207)
465 PRK06851 hypothetical protein; 93.9 1.2 2.6E-05 48.0 14.0 53 158-215 200-252 (367)
466 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.36 7.9E-06 48.1 9.7 27 174-200 32-58 (207)
467 PRK14723 flhF flagellar biosyn 93.9 0.24 5.2E-06 58.2 9.3 87 176-267 185-273 (767)
468 TIGR03263 guanyl_kin guanylate 93.8 0.047 1E-06 53.2 3.2 24 177-200 2-25 (180)
469 COG0003 ArsA Predicted ATPase 93.8 0.088 1.9E-06 55.6 5.2 49 176-226 2-50 (322)
470 PRK13949 shikimate kinase; Pro 93.8 0.052 1.1E-06 52.0 3.3 24 177-200 2-25 (169)
471 PRK14530 adenylate kinase; Pro 93.8 0.047 1E-06 54.9 3.1 24 177-200 4-27 (215)
472 COG1763 MobB Molybdopterin-gua 93.8 0.048 1E-06 51.0 2.9 36 176-213 2-37 (161)
473 PF13086 AAA_11: AAA domain; P 93.8 0.085 1.8E-06 53.8 5.1 35 164-200 7-41 (236)
474 TIGR03305 alt_F1F0_F1_bet alte 93.8 0.21 4.6E-06 55.0 8.3 94 174-268 136-243 (449)
475 COG1224 TIP49 DNA helicase TIP 93.7 0.13 2.8E-06 53.3 6.0 53 155-207 39-96 (450)
476 PRK00409 recombination and DNA 93.7 0.17 3.8E-06 60.7 8.2 180 174-380 325-527 (782)
477 PRK12339 2-phosphoglycerate ki 93.7 0.06 1.3E-06 52.9 3.6 25 176-200 3-27 (197)
478 PRK15453 phosphoribulokinase; 93.7 0.3 6.5E-06 50.1 8.6 27 174-200 3-29 (290)
479 KOG2170 ATPase of the AAA+ sup 93.7 0.21 4.5E-06 50.7 7.3 45 157-201 84-135 (344)
480 cd01122 GP4d_helicase GP4d_hel 93.7 0.36 7.9E-06 50.5 9.8 53 175-230 29-81 (271)
481 PTZ00185 ATPase alpha subunit; 93.7 0.35 7.5E-06 53.6 9.6 95 174-268 187-300 (574)
482 COG1121 ZnuC ABC-type Mn/Zn tr 93.7 0.19 4.1E-06 50.7 7.1 122 175-299 29-202 (254)
483 COG0714 MoxR-like ATPases [Gen 93.7 0.13 2.8E-06 55.5 6.4 65 155-226 24-88 (329)
484 PRK06936 type III secretion sy 93.7 0.19 4.2E-06 55.1 7.7 90 174-267 160-262 (439)
485 TIGR03498 FliI_clade3 flagella 93.6 0.18 3.9E-06 55.4 7.3 90 174-267 138-240 (418)
486 PF03266 NTPase_1: NTPase; In 93.6 0.05 1.1E-06 51.9 2.8 23 179-201 2-24 (168)
487 TIGR01420 pilT_fam pilus retra 93.6 0.094 2E-06 56.8 5.2 111 175-297 121-231 (343)
488 cd01132 F1_ATPase_alpha F1 ATP 93.6 0.25 5.3E-06 50.6 7.8 88 175-268 68-172 (274)
489 TIGR02868 CydC thiol reductant 93.6 0.21 4.6E-06 58.0 8.5 28 174-201 359-386 (529)
490 PRK14527 adenylate kinase; Pro 93.6 0.064 1.4E-06 52.8 3.6 26 175-200 5-30 (191)
491 PRK00300 gmk guanylate kinase; 93.6 0.064 1.4E-06 53.5 3.6 26 175-200 4-29 (205)
492 PHA02774 E1; Provisional 93.5 0.17 3.7E-06 56.9 7.0 50 162-215 419-469 (613)
493 cd00464 SK Shikimate kinase (S 93.5 0.054 1.2E-06 51.1 2.9 22 179-200 2-23 (154)
494 cd01136 ATPase_flagellum-secre 93.5 0.39 8.5E-06 50.8 9.4 90 174-267 67-169 (326)
495 cd00820 PEPCK_HprK Phosphoenol 93.5 0.067 1.5E-06 46.1 3.1 23 175-197 14-36 (107)
496 PRK14737 gmk guanylate kinase; 93.5 0.072 1.6E-06 51.9 3.7 26 175-200 3-28 (186)
497 PF02374 ArsA_ATPase: Anion-tr 93.5 0.076 1.6E-06 56.2 4.1 45 177-223 2-46 (305)
498 TIGR01313 therm_gnt_kin carboh 93.5 0.05 1.1E-06 52.0 2.5 22 179-200 1-22 (163)
499 COG2019 AdkA Archaeal adenylat 93.5 0.072 1.6E-06 49.0 3.3 48 176-235 4-51 (189)
500 cd03213 ABCG_EPDR ABCG transpo 93.4 0.28 6E-06 48.4 7.9 27 174-200 33-59 (194)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.7e-100 Score=885.75 Aligned_cols=838 Identities=41% Similarity=0.686 Sum_probs=698.7
Q ss_pred HHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036761 16 FNRCLDCFLGEAAYVRNLQENVEALKYELERLIAIKGDVEDRVRNAERQQMMTRLNQVQRWLKRVDAVTAEANELIRDGS 95 (897)
Q Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~wl~~~~~~~~~~ed~ld~~~ 95 (897)
++++++++.+++..+.++++++..|++++..|+.++.| |++++ .....+..|.+.+++++|+++|+++.|.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d-------~~a~~--~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALED-------LDAKR--DDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHhhc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999988 55554 4556788999999999999999999987
Q ss_pred hhhh----------------hhhccCCCCCCchhhhhHHHHHHHHHHHHHHHHhcCCcceecc-cccccccccCCCCCC-
Q 036761 96 QEIE----------------KLCLGGYCSKNCKSSYKFGKQVAKKLRDVRTLMAEGSFEVVAV-RAAESVADERPIEPT- 157 (897)
Q Consensus 96 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 157 (897)
.+.. +.|..++|.......|.+++++.+++++++.+..++.|..+.. ..+....+.+|....
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 5432 1233456666777778899999999999999988876766543 222222333333333
Q ss_pred -ccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhccc-CCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC
Q 036761 158 -VGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFL-GQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 158 -vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (897)
||.+..++++.+.|.+++..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...++.+|++.++...
T Consensus 160 ~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~ 239 (889)
T KOG4658|consen 160 DVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLD 239 (889)
T ss_pred cccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCC
Confidence 99999999999999998889999999999999999999999998 8999999999999999999999999999999877
Q ss_pred chhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhh-cCCCceEEcCCCC
Q 036761 236 DSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW-MGAHKNFEVGCLS 314 (897)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~-~~~~~~~~l~~L~ 314 (897)
..+.....++.+..|.+.|+++||+|||||||+..+|+.++.++|...+| |||++|||+.+||.. +++...++++.|+
T Consensus 240 ~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g-~KvvlTTRs~~V~~~~m~~~~~~~v~~L~ 318 (889)
T KOG4658|consen 240 EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENG-SKVVLTTRSEEVCGRAMGVDYPIEVECLT 318 (889)
T ss_pred cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCC-eEEEEEeccHhhhhccccCCccccccccC
Confidence 66666667899999999999999999999999999999999999998776 999999999999998 8888899999999
Q ss_pred hHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHccc-CCCCCCChHHHH
Q 036761 315 ANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQTS-ASEFPGLENDVL 393 (897)
Q Consensus 315 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~v~ 393 (897)
++|||.||++.++......++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++++.+.+. ..+.+++.+.++
T Consensus 319 ~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 319 PEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred ccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 9999999999999886566677999999999999999999999999999999999999999999888 666677788999
Q ss_pred HHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcc-hhhhhHHHHHHHHHHhccccccC----
Q 036761 394 RVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKY-EVQDKGHTILGNIVHACLLEEEG---- 468 (897)
Q Consensus 394 ~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~-~~~~~~~~~l~~L~~~~ll~~~~---- 468 (897)
+++++||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+.... .++++|+.|+++|++++|++...
T Consensus 399 ~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~ 477 (889)
T KOG4658|consen 399 PILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGR 477 (889)
T ss_pred HhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccc
Confidence 999999999995 999999999999999999999999999999999986544 89999999999999999999863
Q ss_pred CceEEechhHHHHHHHHHhccCccchhhcccccEEEEcCCCccCCCcccccccceEeecccccccccccccCCccceeee
Q 036761 469 DDVVKMHDLIRDMTLWIARDTEKTEDTEKQKENYLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLF 548 (897)
Q Consensus 469 ~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~ 548 (897)
..+|+|||+||++|.+++++ .++.++++++..+.+....+....|...|++++.+|.+..++....+++|++|.
T Consensus 478 ~~~~kmHDvvRe~al~ias~------~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLl 551 (889)
T KOG4658|consen 478 KETVKMHDVVREMALWIASD------FGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLL 551 (889)
T ss_pred eeEEEeeHHHHHHHHHHhcc------ccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEE
Confidence 47999999999999999997 666667777777767777888889999999999999999999889999999999
Q ss_pred hhcccc-ccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccc
Q 036761 549 LIFNEE-LEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFL 627 (897)
Q Consensus 549 l~~~~~-l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l 627 (897)
+.++.. +..++..+|..|+.|++|||++|..+.++|++|++|.|||||+++++.|+.+|.++++|++|.+|++..+..+
T Consensus 552 l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 552 LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 995542 8889999999999999999999989999999999999999999999999999999999999999999999876
Q ss_pred cccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccce
Q 036761 628 ITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQ 707 (897)
Q Consensus 628 ~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 707 (897)
..+| ++...|++|++|.+..... ..+.....++.++.+|+.+.+.......+..+.....+.+..+
T Consensus 632 ~~~~-~i~~~L~~Lr~L~l~~s~~-------------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 632 ESIP-GILLELQSLRVLRLPRSAL-------------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred cccc-chhhhcccccEEEeecccc-------------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 6665 4477799999999987541 1234477788899999998887665533333333334444455
Q ss_pred eEEEeccCCCcccccccccccCCCCceeeeecCCccEEEeccc----CcC-CCCccEEEEeCCCCCCCCcccccCCCccE
Q 036761 708 ALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQ----PFD-FRSLKKIQIYGCHRLKDLTFLLFAPNLKS 782 (897)
Q Consensus 708 ~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~----~~~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 782 (897)
.+.+.++.. ......+..+.+|+.|.|.+|...+.. ..+. ... |+++..+.+.+|.....+.|....|+|+.
T Consensus 698 ~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~-~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~ 774 (889)
T KOG4658|consen 698 SLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIV-IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTS 774 (889)
T ss_pred hhhhccccc--ceeecccccccCcceEEEEcCCCchhh-cccccccchhhhHHHHHHHHhhccccccccchhhccCcccE
Confidence 555543222 222346778999999999999876421 1111 122 67889999999999999988889999999
Q ss_pred EEEecCchhhhhhcccccCCccccccCCCccccccee-ecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCcc
Q 036761 783 IEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSL-RLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSA 861 (897)
Q Consensus 783 L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~ 861 (897)
|.+..|..++++++...... ........|+++..+ .+.+.+.+..+......+++|+.+.+..||++..+|......
T Consensus 775 l~l~~~~~~e~~i~~~k~~~--~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 775 LSLVSCRLLEDIIPKLKALL--ELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EEEecccccccCCCHHHHhh--hcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 99999999999876332211 111124566777777 577777777777766778889999999999999999876543
Q ss_pred cc---cceEEEehhhhhcccccccccccccc
Q 036761 862 KE---RKIVIRGYRKWWEQLKWVDQDTKNAF 889 (897)
Q Consensus 862 ~~---~~l~i~~c~~~~~~l~~~~~~~~~~~ 889 (897)
.. ..+....+.+|.+.++|+++.++..+
T Consensus 853 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 853 IVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeccccceeecCCccceeeEEehhhhhhhhc
Confidence 22 23333344567889999999887665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.2e-64 Score=621.35 Aligned_cols=631 Identities=22% Similarity=0.336 Sum_probs=436.7
Q ss_pred CCCccchHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe---CCc-----------C
Q 036761 155 EPTVGMQSQLDKVWSCLV--EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV---SKD-----------L 218 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---~~~-----------~ 218 (897)
+++|||+..++++..+|. .+++++|+||||||+||||||+++|++. ..+|+..+|+.. +.. +
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~ 261 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL--SRQFQSSVFIDRAFISKSMEIYSSANPDDY 261 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH--hhcCCeEEEeeccccccchhhccccccccc
Confidence 679999999999998874 3578999999999999999999999987 678988888742 111 0
Q ss_pred C-HHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChh
Q 036761 219 Q-IEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 219 ~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+ ...+.+.++.++...... .... ...+++.++++|+||||||||+...|+.+.......+.| |+||||||+..
T Consensus 262 ~~~~~l~~~~l~~il~~~~~-~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~G-srIIiTTrd~~ 335 (1153)
T PLN03210 262 NMKLHLQRAFLSEILDKKDI-KIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSG-SRIIVITKDKH 335 (1153)
T ss_pred chhHHHHHHHHHHHhCCCCc-ccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCC-cEEEEEeCcHH
Confidence 1 122334444443211100 0111 245778899999999999999999998887655444555 99999999999
Q ss_pred HhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHH
Q 036761 298 VCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKV 377 (897)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~ 377 (897)
++..++..++|+++.++.++||+||+++||... .+++++.+++++|+++|+|+|||++++|++|++ ++..+|+.+++.
T Consensus 336 vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~ 413 (1153)
T PLN03210 336 FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPR 413 (1153)
T ss_pred HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 988777788999999999999999999998765 344568899999999999999999999999997 578999999999
Q ss_pred HcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHHHHH
Q 036761 378 LQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTILGN 457 (897)
Q Consensus 378 l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~~ 457 (897)
++... +..|..+|++||+.|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++.
T Consensus 414 L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~~ 474 (1153)
T PLN03210 414 LRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLKN 474 (1153)
T ss_pred HHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChHH
Confidence 87642 3589999999999998746899999999999886553 4677877764432 223899
Q ss_pred HHHhccccccCCceEEechhHHHHHHHHHhccCccc----------h--------hhccc-ccE----------------
Q 036761 458 IVHACLLEEEGDDVVKMHDLIRDMTLWIARDTEKTE----------D--------TEKQK-ENY---------------- 502 (897)
Q Consensus 458 L~~~~ll~~~~~~~~~mHdlv~~~a~~~~~~~~~~~----------~--------~~~~~-~~~---------------- 502 (897)
|+++||++.. .+.+.|||++|++|+++++++.... + .+..+ +.+
T Consensus 475 L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 475 LVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 9999999886 4689999999999999997753100 0 00000 000
Q ss_pred ---------EEEcCCC--------ccCCCcccc-cccceEeecccccccccccccCCccceeeehhccccccccchhhhc
Q 036761 503 ---------LVYTGAG--------LTKPPNVRE-WENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFK 564 (897)
Q Consensus 503 ---------~~~~~~~--------~~~~~~~~~-~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 564 (897)
+...... ..-+..+.. ..++|.|.+.++.+..+|....+.+|+.|++. ++.+..++.. +.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~~-~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWDG-VH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc-Cccccccccc-cc
Confidence 0000000 000001111 13567777777777777766667888888888 5667777766 67
Q ss_pred CCCcccEEEccCCCCCcccCccccCccCCCEeeccCC-CccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccce
Q 036761 565 SMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGT-AIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIV 643 (897)
Q Consensus 565 ~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 643 (897)
.+++|++|+|++|..++.+| .++.+++|++|+|++| .+..+|..++++++|++|++++|..++.+|.+ + ++++|++
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCE
Confidence 88889999998876777787 5788888999999887 57788888888899999999988878888875 3 7888888
Q ss_pred eeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhc------------------------
Q 036761 644 LRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKS------------------------ 699 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------------------------ 699 (897)
|++++|..... .+. ..++|+.|+++.|.+..++.....
T Consensus 709 L~Lsgc~~L~~---------------~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 709 LNLSGCSRLKS---------------FPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred EeCCCCCCccc---------------ccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 88888754321 110 124555566655554443321100
Q ss_pred ---hhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCccccc
Q 036761 700 ---KELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLF 776 (897)
Q Consensus 700 ---~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~ 776 (897)
....++|+.|++++|.....++ ..+.++++|+.|++++|..++.++.. ..+++|++|+|++|..+..+|.+
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP-~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~-- 844 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELP-SSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDI-- 844 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccC-hhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccccc--
Confidence 0012244444554444333333 12444555555555555444443221 13445555555555444443321
Q ss_pred CCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCC
Q 036761 777 APNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPL 856 (897)
Q Consensus 777 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~ 856 (897)
.++|+.|+|+++ .++.+ +..+..+++|+.|++++|++++.++.....+++|+.|++++|++|+.++.
T Consensus 845 ~~nL~~L~Ls~n-~i~~i------------P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 845 STNISDLNLSRT-GIEEV------------PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccccCEeECCCC-CCccC------------hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 244555555442 23333 33567788888999988888888888878888888888999988887765
Q ss_pred C
Q 036761 857 D 857 (897)
Q Consensus 857 ~ 857 (897)
.
T Consensus 912 ~ 912 (1153)
T PLN03210 912 N 912 (1153)
T ss_pred C
Confidence 3
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-44 Score=384.83 Aligned_cols=281 Identities=34% Similarity=0.630 Sum_probs=231.6
Q ss_pred chHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch
Q 036761 160 MQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS 237 (897)
Q Consensus 160 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 237 (897)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++...+.+|+.++|+.++...+...++..|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 7899999999999999999999999966689999999999999999999999999999877543
Q ss_pred h-ccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhhcCC-CceEEcCCCCh
Q 036761 238 W-MKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWMGA-HKNFEVGCLSA 315 (897)
Q Consensus 238 ~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 315 (897)
. ...+.++....+.+.++++++||||||||+...|+.+...++....+ ++||||||+..++..+.. ...|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~-~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSG-SKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS--EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhccccceeeeeeeccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 3 45677889999999999999999999999999999988877776666 999999999998776654 67899999999
Q ss_pred HHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHcccCCCCCCChHHHHHH
Q 036761 316 NDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQTSASEFPGLENDVLRV 395 (897)
Q Consensus 316 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~ 395 (897)
+||++||.+.++.......+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999765423345556789999999999999999999999766678899999988887765444455789999
Q ss_pred HHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccC
Q 036761 396 LKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVT 442 (897)
Q Consensus 396 l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 442 (897)
+.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|+|...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 899999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=4.2e-23 Score=257.26 Aligned_cols=331 Identities=18% Similarity=0.173 Sum_probs=213.6
Q ss_pred ccccceEeecccccccccccccCCccceeeehhcccccc-ccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEe
Q 036761 518 EWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELE-MITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHL 596 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L 596 (897)
.+.++++|++++|.+....+...+++|++|+++ ++.+. .+|.. ++++++|++|+|++|.....+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 456778888877777644334567778888888 44444 34443 7788888888888884445677778888888888
Q ss_pred eccCCCcc-ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhc
Q 036761 597 DLSGTAIR-ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALR 675 (897)
Q Consensus 597 ~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (897)
++++|.+. .+|..++++++|++|++++|.+...+|.. ++++++|++|++++|.... ..+..++
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~---------------~~p~~l~ 257 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTG---------------PIPSSLG 257 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceecc---------------ccChhHh
Confidence 88888776 56778888888888888888766667765 7888888888887765432 1556677
Q ss_pred CCCCCCEEEEEeCCccc-HHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCC
Q 036761 676 GLEHLEVLSLTLNNFQD-LQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDF 754 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l 754 (897)
++++|+.|+++.|.+.. .+.. ...+.+|+.|++++|......+ ..+.++++|+.|++++|.....+ +.. ...+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~-~~~l 331 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-PVA-LTSL 331 (968)
T ss_pred CCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-Chh-HhcC
Confidence 77888888887776643 2211 2234577777777765433332 34566777888887777544332 222 4467
Q ss_pred CCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhccccc-C----------Cc-cccccCCCcccccceeec
Q 036761 755 RSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKF-A----------DV-PEVMANLKPFAQLYSLRL 821 (897)
Q Consensus 755 ~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~-~----------~~-~~~~~~~~~~~~L~~L~l 821 (897)
++|+.|+|++|.....+| .++.+++|+.|++++|.....++..... . .+ ...+..+..+++|+.|++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 778888887774433444 4666777777777776433222210000 0 00 012224556788888888
Q ss_pred ccccccccccCCCCCCCCcceeeecCCccCCCCCCCCC-cccccceEEEehh
Q 036761 822 GGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSN-SAKERKIVIRGYR 872 (897)
Q Consensus 822 ~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~-~~~~~~l~i~~c~ 872 (897)
++|.....+|..+..+++|+.|++++|.--..+|.... ..+++.+++.+|.
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 88776666776777788888888888754444454332 2344778887773
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.9e-22 Score=250.78 Aligned_cols=344 Identities=17% Similarity=0.178 Sum_probs=251.2
Q ss_pred cEEEEcCCCccCCCcccccccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 501 NYLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
+++...+..+...|......+++.|++.++.+..++. ...+++|+.|+|++++.+..+|. ++.+++|+.|+|++|..
T Consensus 592 r~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 592 RLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS 669 (1153)
T ss_pred EEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC
Confidence 3445555566666665567899999999999988764 57899999999997777888885 78899999999999988
Q ss_pred CcccCccccCccCCCEeeccCC-CccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC
Q 036761 580 MSSFPLGISVLVSLQHLDLSGT-AIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK 658 (897)
Q Consensus 580 ~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
+..+|.+++++.+|++|++++| .++.+|..+ ++++|++|++++|..+..+|. ..++|++|++.++.+..++...
T Consensus 670 L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 670 LVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred ccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccc
Confidence 8999999999999999999997 788999876 799999999999987777775 2467888888887654432110
Q ss_pred CCCcc------------ccCc--cchhHHhcCCCCCCEEEEEeCCc-ccHHHHHhchhccccceeEEEeccCCCcccccc
Q 036761 659 NDSDL------------FSGG--DLLVEALRGLEHLEVLSLTLNNF-QDLQCVLKSKELRRCTQALYLYSFKRSEPLDVS 723 (897)
Q Consensus 659 ~~~~~------------~~~~--~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 723 (897)
...+. +.+. ...+......++|+.|++++|.. ..++. ....+++|+.|++++|...+.++..
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~---si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS---SIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---hhhCCCCCCEEECCCCCCcCeeCCC
Confidence 00000 0000 00011122346889999988753 23333 2344668999999999877766532
Q ss_pred cccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCC
Q 036761 724 ALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFAD 802 (897)
Q Consensus 724 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~ 802 (897)
+ ++++|+.|++++|..+..++ ...++|+.|+|++| .++.+| ++..+++|+.|+|++|+.++.++.
T Consensus 822 -~-~L~sL~~L~Ls~c~~L~~~p-----~~~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~------ 887 (1153)
T PLN03210 822 -I-NLESLESLDLSGCSRLRTFP-----DISTNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL------ 887 (1153)
T ss_pred -C-CccccCEEECCCCCcccccc-----ccccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc------
Confidence 2 68999999999998887542 23579999999998 677777 678899999999999999988765
Q ss_pred ccccccCCCcccccceeecccccccccccCCC-------------CCCCCcceeeecCCccCCCCCCCCCcccccceEEE
Q 036761 803 VPEVMANLKPFAQLYSLRLGGLTVLKSIYKRP-------------LPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIR 869 (897)
Q Consensus 803 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------------~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~ 869 (897)
....+++|+.|++++|++++.++... ..+|+...+.+.+|.+|..-+..........+.+.
T Consensus 888 ------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~ 961 (1153)
T PLN03210 888 ------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQSIFKQLILS 961 (1153)
T ss_pred ------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccccceEEECC
Confidence 56788999999999999998665321 13455566788899888765543222222344455
Q ss_pred eh--hhh
Q 036761 870 GY--RKW 874 (897)
Q Consensus 870 ~c--~~~ 874 (897)
|. +.|
T Consensus 962 g~evp~~ 968 (1153)
T PLN03210 962 GEEVPSY 968 (1153)
T ss_pred CccCchh
Confidence 54 454
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.7e-25 Score=232.14 Aligned_cols=327 Identities=20% Similarity=0.237 Sum_probs=213.2
Q ss_pred cEEEEcCCCccCCC-cccccccceEeecccccccccc-cccCCccceeeehhccccc--cccchhhhcCCCcccEEEccC
Q 036761 501 NYLVYTGAGLTKPP-NVREWENARRFSLMETQIRTLS-AVPTCLHLLTLFLIFNEEL--EMITSDFFKSMPRLKVLNLSG 576 (897)
Q Consensus 501 ~~~~~~~~~~~~~~-~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~l--~~l~~~~~~~l~~L~~L~Ls~ 576 (897)
.|+......+...| .+..+.++.||++.+|++..+. .++.++.||.+.+. .|++ ..+|+++| .|..|.+||||+
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R-~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR-DNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh-ccccccCCCCchhc-ccccceeeecch
Confidence 46666555555554 4566789999999999987764 56889999999999 5544 46888855 699999999999
Q ss_pred CCCCcccCccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCC
Q 036761 577 ARRMSSFPLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPN 655 (897)
Q Consensus 577 ~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 655 (897)
| .+++.|..+..-+++-.|+||+|+|..+|.. +-+|+.|-+|||++|+ +..+|+. +..|.+|++|.++++....+
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hf- 188 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHF- 188 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHH-
Confidence 9 8999999999999999999999999999986 5689999999999998 6999998 99999999999999765332
Q ss_pred CCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCcee
Q 036761 656 GKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLW 735 (897)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~ 735 (897)
-+..+..+++|+.|.+++.+-+ +..+......+.+|+.++++.|.. ..++ ..+-.+++|+.|+
T Consensus 189 --------------QLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~L-p~vP-ecly~l~~LrrLN 251 (1255)
T KOG0444|consen 189 --------------QLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENNL-PIVP-ECLYKLRNLRRLN 251 (1255)
T ss_pred --------------HHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccccCC-Ccch-HHHhhhhhhheec
Confidence 2333444455555555544321 111111122233555555554431 1121 2344555666666
Q ss_pred eeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhh-hhcc-----------cccCC
Q 036761 736 IHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEE-IISE-----------AKFAD 802 (897)
Q Consensus 736 l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~-i~~~-----------~~~~~ 802 (897)
+++|. ++.+... .....+|++|+++.| .++.+| .+..++.|+.|.+.++..--+ +|.. .....
T Consensus 252 LS~N~-iteL~~~--~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 252 LSGNK-ITELNMT--EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred cCcCc-eeeeecc--HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 66552 3322221 223445666666655 455554 344555555555554321111 1110 00111
Q ss_pred ccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCC
Q 036761 803 VPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLP 855 (897)
Q Consensus 803 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp 855 (897)
++-++..++.|++|+.|.|+. +.|-.+|..+.-+|.|+.|+++.+|+|.--|
T Consensus 328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 222334677788888888865 5677777777778888888888888887544
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.2e-22 Score=250.85 Aligned_cols=332 Identities=20% Similarity=0.168 Sum_probs=154.3
Q ss_pred cccccceEeecccccccc-cc-cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 517 REWENARRFSLMETQIRT-LS-AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 517 ~~~~~lr~L~l~~~~~~~-l~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
..+.+++.|++++|.+.. +| .+.++++|++|++++|.....+|.. ++++++|++|+|++|.....+|..++++++|+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 344556666666555432 22 2345556666666532222233332 55566666666666533334555566666666
Q ss_pred EeeccCCCcc-ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH
Q 036761 595 HLDLSGTAIR-ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 595 ~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
+|++++|.++ .+|..++++++|++|++++|.+...+|.. +.++++|++|++++|.... ..+..
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~---------------~~p~~ 303 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSG---------------EIPEL 303 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeecc---------------CCChh
Confidence 6666666554 45555666666666666666544445544 5556666666665554321 13344
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcC
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFD 753 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 753 (897)
+.++++|+.|++++|.+.... ......+++|+.|++++|......+ ..+..+++|+.|++++|.....+ +.+ ...
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~-p~~-~~~ 378 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEI-PEG-LCS 378 (968)
T ss_pred HcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeC-Chh-HhC
Confidence 455555555555555543211 0111223355555555554322222 23444555555555554322211 111 223
Q ss_pred CCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccc-----------cCCcc-ccccCCCcccccceee
Q 036761 754 FRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAK-----------FADVP-EVMANLKPFAQLYSLR 820 (897)
Q Consensus 754 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~-----------~~~~~-~~~~~~~~~~~L~~L~ 820 (897)
+++|+.|++++|.....+| .+..+++|+.|++++|.....++.... ...+. ..+.....+++|+.|+
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 3444444444443222222 233444444444444432211111000 00000 0011234566666666
Q ss_pred cccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCcc-cccceEEEeh
Q 036761 821 LGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSA-KERKIVIRGY 871 (897)
Q Consensus 821 l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~-~~~~l~i~~c 871 (897)
+++|.....+|... ..++|+.|++++|.-...+|...... +++.+++++|
T Consensus 459 L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 509 (968)
T PLN00113 459 LARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN 509 (968)
T ss_pred CcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC
Confidence 66665554444332 34666777776665444555433322 2366666655
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.9e-22 Score=210.20 Aligned_cols=345 Identities=19% Similarity=0.223 Sum_probs=185.9
Q ss_pred cccccceEeecccccccccccccCC-ccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCC
Q 036761 517 REWENARRFSLMETQIRTLSAVPTC-LHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQ 594 (897)
Q Consensus 517 ~~~~~lr~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~ 594 (897)
.++.+++.+.+..|.+..+|.+... .+|+.|+|. +|.|..+....++.++.||.||||.| .+.++|. ++..-.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~-~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR-HNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeee-ccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCce
Confidence 3445666677777777777666443 347777777 66666666666666777777777777 6666553 244445677
Q ss_pred EeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH
Q 036761 595 HLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 595 ~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
+|+|++|.|+.+-. .|..|.+|..|.|+.|++ ..+|...|.+|++|+.|++..+.+... .-..
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdLnrN~iriv---------------e~lt 240 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDLNRNRIRIV---------------EGLT 240 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhccccceeee---------------hhhh
Confidence 77777777776643 366666777777777763 666666666677777777766553221 1122
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecC-------------
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECE------------- 740 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~------------- 740 (897)
|+.|++|+.|.+..|++..+..... -.+..++.|+|..|. +..+....+-+++.|+.|+++.|.
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~F--y~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAF--YGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcce--eeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 4445555555555555444332211 112244444444443 122222234444455555554442
Q ss_pred ----------CccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCcccccc
Q 036761 741 ----------ELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMA 808 (897)
Q Consensus 741 ----------~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 808 (897)
.++.+++.. +..++.|+.|+|++| .+..+. .+..+.+|+.|+|+++. +.-.+. ....
T Consensus 318 kL~~LdLs~N~i~~l~~~s-f~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IE--------Daa~ 386 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGS-FRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIE--------DAAV 386 (873)
T ss_pred cceeEeccccccccCChhH-HHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEe--------cchh
Confidence 222222211 333444444444444 333332 23345555555555532 211111 1122
Q ss_pred CCCcccccceeecccccccccccC-CCCCCCCcceeeecCCccCCCCC-CCCCcccccceE------EEeh-----hhhh
Q 036761 809 NLKPFAQLYSLRLGGLTVLKSIYK-RPLPFPCLRDLTVNSCDELRKLP-LDSNSAKERKIV------IRGY-----RKWW 875 (897)
Q Consensus 809 ~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~i~~C~~L~~lp-~~~~~~~~~~l~------i~~c-----~~~~ 875 (897)
.+.++|+|+.|.+.+ ++++.++. .+..+++|+.|++.+++ +.++. ..+....+++|. +.+| ..|.
T Consensus 387 ~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHHHHHH
Confidence 566799999999999 68888886 45669999999999854 55543 233333333333 3356 2333
Q ss_pred cccccc-cccccccccCCccc
Q 036761 876 EQLKWV-DQDTKNAFLPCFRS 895 (897)
Q Consensus 876 ~~l~~~-~~~~~~~~~~~~~~ 895 (897)
.+...+ ....+...+++++.
T Consensus 465 ~~~~lq~sv~a~CayPe~Lad 485 (873)
T KOG4194|consen 465 YRRKLQSSVIAKCAYPEPLAD 485 (873)
T ss_pred HhcccccceeeeccCCccccc
Confidence 332222 22445556666653
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=2.4e-23 Score=219.30 Aligned_cols=331 Identities=19% Similarity=0.275 Sum_probs=259.1
Q ss_pred cccccccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc--ccCccccCcc
Q 036761 515 NVREWENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS--SFPLGISVLV 591 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~--~lp~~i~~L~ 591 (897)
+...+..++.|.+....+..+|. +..|.+|+.|.+. .|.+..+... ++.++.||.+++..| +++ -+|..|..|.
T Consensus 27 ~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~-HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA-HNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLK 103 (1255)
T ss_pred hHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhh-hhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhcccc
Confidence 45567789999999999988884 6889999999999 6777777766 889999999999998 554 4899999999
Q ss_pred CCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchh
Q 036761 592 SLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLV 671 (897)
Q Consensus 592 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (897)
.|..||||+|++++.|..+..-+|+-+|+|++|+ +..+|..++-+|+.|-.|+++.+..-. .|
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~----------------LP 166 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEM----------------LP 166 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhh----------------cC
Confidence 9999999999999999999999999999999998 499999999999999999999987432 78
Q ss_pred HHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCC-cccccccccccCCCCceeeeecCCccEEEeccc
Q 036761 672 EALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRS-EPLDVSALAGLKHLNRLWIHECEELEELEMARQ 750 (897)
Q Consensus 672 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 750 (897)
..+..|.+|++|.+++|.+..++ +.....+++|..|.+++.+.. ..++ .++..+.+|..++++.| .+..+|..
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N-~Lp~vPec-- 240 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSEN-NLPIVPEC-- 240 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcccccchhhcCC-Cchhhhhhhhhcccccc-CCCcchHH--
Confidence 88999999999999999876543 222333457777777776532 2223 36778899999999966 55544333
Q ss_pred CcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhc-------------ccccCCccccccCCCccccc
Q 036761 751 PFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIIS-------------EAKFADVPEVMANLKPFAQL 816 (897)
Q Consensus 751 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~-------------~~~~~~~~~~~~~~~~~~~L 816 (897)
...+++|+.|+|++| .++.+. ..+...+|++|++|.+ .++.+|. ..+.-.+.++++.++.+..|
T Consensus 241 ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 457899999999999 677766 4566789999999995 5555543 12222344566677777777
Q ss_pred ceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCcccc-cceEEEehhhhh
Q 036761 817 YSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKE-RKIVIRGYRKWW 875 (897)
Q Consensus 817 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~-~~l~i~~c~~~~ 875 (897)
+.+...+ ++|+-+|.+.+.|+.|+.|.+. |+.|-+||..+..+.- +.|++...+++.
T Consensus 319 evf~aan-N~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 319 EVFHAAN-NKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHHHhhc-cccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCcc
Confidence 7777776 6777788888888888888885 5788889988765544 778887776553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2e-21 Score=203.98 Aligned_cols=269 Identities=21% Similarity=0.280 Sum_probs=124.3
Q ss_pred cceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEee
Q 036761 521 NARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLD 597 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~ 597 (897)
.+|.|+++.|.+.+++ .++.-.+++.|+|+ +|.|+.+..+.|.++.+|-.|.|+.| .++.+|. .|.+|++|+.|+
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhh
Confidence 4455555555554443 23444445555555 44455554444555555555555555 4444442 233355555555
Q ss_pred ccCCCcccc-ChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcC
Q 036761 598 LSGTAIREL-PKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRG 676 (897)
Q Consensus 598 L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (897)
|..|.|... --.|..|.+|+.|.+..|.+ ..+..++|..|.++++|++..+..... ....+-+
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I-~kL~DG~Fy~l~kme~l~L~~N~l~~v---------------n~g~lfg 291 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDI-SKLDDGAFYGLEKMEHLNLETNRLQAV---------------NEGWLFG 291 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCc-ccccCcceeeecccceeecccchhhhh---------------hcccccc
Confidence 555544433 12344455555555555542 444444455555555555554443221 1223445
Q ss_pred CCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCC
Q 036761 677 LEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRS 756 (897)
Q Consensus 677 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 756 (897)
|+.|+.|+++.|.+..+. .....+...|+.|+|+.|. ++.++..++..+..|++|++++|. +..+ ....+..+++
T Consensus 292 Lt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l-~e~af~~lss 366 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS-IDHL-AEGAFVGLSS 366 (873)
T ss_pred cchhhhhccchhhhheee--cchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc-hHHH-HhhHHHHhhh
Confidence 555556666655554332 1122334455666665554 333444445555555555555552 2211 1112344555
Q ss_pred ccEEEEeCCCC---CCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccc
Q 036761 757 LKKIQIYGCHR---LKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGL 824 (897)
Q Consensus 757 L~~L~L~~c~~---l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 824 (897)
|++|+|++|.- +++-. .+..+++|+.|++.+ ++++.++. ..+.+|++|++|+|.++
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-----------rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-----------RAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch-----------hhhccCcccceecCCCC
Confidence 55555555421 11111 233455555555555 34444433 13445555555555553
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=1.8e-21 Score=195.78 Aligned_cols=326 Identities=21% Similarity=0.234 Sum_probs=207.8
Q ss_pred CCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCcc
Q 036761 512 KPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLV 591 (897)
Q Consensus 512 ~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~ 591 (897)
-++....+.++..|.+..|.+..+|.|+.|..|..|.+. .|.++.+|....+++.+|.+|||.+| .++++|..++.+.
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g-~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLr 275 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG-ENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLR 275 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc-ccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhh
Confidence 355677788899999999999999999999999999999 89999999998889999999999999 9999999999999
Q ss_pred CCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCc--cceeeccc-cCCCCCCCCCCCCccccCcc
Q 036761 592 SLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSS--LIVLRMFG-VGDWSPNGKKNDSDLFSGGD 668 (897)
Q Consensus 592 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~--L~~L~l~~-~~~~~~~~~~~~~~~~~~~~ 668 (897)
+|.+||+|+|.|+.+|.++++| .|+.|-+.||.. ..+-.+++.+=++ |++|.-.. +...+...+... ....+..
T Consensus 276 sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e-~~~t~~~ 352 (565)
T KOG0472|consen 276 SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE-TAMTLPS 352 (565)
T ss_pred hhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc-ccCCCCC
Confidence 9999999999999999999999 999999999984 6665554433221 33332210 111100000000 0011111
Q ss_pred chhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEec
Q 036761 669 LLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMA 748 (897)
Q Consensus 669 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 748 (897)
........+.+.+.|+++.-+.+.+|.-........-....+++.++.. .++ ..+..+..+.+.-+..++.+.. +.
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elP-k~L~~lkelvT~l~lsnn~isf--v~ 428 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELP-KRLVELKELVTDLVLSNNKISF--VP 428 (565)
T ss_pred CcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhh-hhhHHHHHHHHHHHhhcCcccc--ch
Confidence 1223344455677777777777666543333222223455566555421 111 1122222222222222323331 11
Q ss_pred ccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcc-----------cccCCccccc-cCCCcccc
Q 036761 749 RQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISE-----------AKFADVPEVM-ANLKPFAQ 815 (897)
Q Consensus 749 ~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~-----------~~~~~~~~~~-~~~~~~~~ 815 (897)
.....+++|..|+|++| .+.++| .++.+..|+.|+|+.+ ....+|.. .....+.++. +.+..+.+
T Consensus 429 ~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred HHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 12445666666666666 455555 3555666666666664 22222210 0001111222 24778889
Q ss_pred cceeecccccccccccCCCCCCCCcceeeecCCc
Q 036761 816 LYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 816 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~ 849 (897)
|..|++.+ +.+..+|...+.|.+|++|++.++|
T Consensus 507 L~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 507 LTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 99999987 6788999999999999999999976
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.74 E-value=1.5e-20 Score=189.18 Aligned_cols=332 Identities=19% Similarity=0.255 Sum_probs=184.7
Q ss_pred ccccccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 516 VREWENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
..+..++.++..++|++..+|. ......|+.|+.+ .+.+..++++ ++.+..|..|+..+| .+..+|.+++++..|.
T Consensus 87 ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s-~n~~~el~~~-i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~ 163 (565)
T KOG0472|consen 87 IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS-SNELKELPDS-IGRLLDLEDLDATNN-QISSLPEDMVNLSKLS 163 (565)
T ss_pred HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc-ccceeecCch-HHHHhhhhhhhcccc-ccccCchHHHHHHHHH
Confidence 3334444555555555555442 3444555555555 4444455544 444555555555555 5555555555555555
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCC-CCCCC--ccccC---cc
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNG-KKNDS--DLFSG---GD 668 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~--~~~~~---~~ 668 (897)
.|++.+|+++++|+..-+++.|++||...|. ++.+|++ ++.|.+|..|++..+++...+. .+.+. ....+ -.
T Consensus 164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~-lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNL-LETLPPE-LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE 241 (565)
T ss_pred HhhccccchhhCCHHHHHHHHHHhcccchhh-hhcCChh-hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH
Confidence 5555555555555554445555555555553 4555555 5555555555555554433220 00000 00000 01
Q ss_pred chhHH-hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccE---
Q 036761 669 LLVEA-LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEE--- 744 (897)
Q Consensus 669 ~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~--- 744 (897)
..+.+ +.++++|..|++..|++..+|.-.. ..++|..|+++++.. ..++ ..++++ +|+.|-+.|++.-+-
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~c---lLrsL~rLDlSNN~i-s~Lp-~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---LLRSLERLDLSNNDI-SSLP-YSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHH---HhhhhhhhcccCCcc-ccCC-cccccc-eeeehhhcCCchHHHHHH
Confidence 13333 4589999999999999888765433 445888999998863 3333 256777 788887776642110
Q ss_pred E-------------------E--------------eccc---CcCCCC--------------------------ccEEEE
Q 036761 745 L-------------------E--------------MARQ---PFDFRS--------------------------LKKIQI 762 (897)
Q Consensus 745 l-------------------~--------------~~~~---~~~l~~--------------------------L~~L~L 762 (897)
+ . +.+. .....+ .+..++
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 0 0 0000 000011 233333
Q ss_pred eCCC-----------------------CCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccce
Q 036761 763 YGCH-----------------------RLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYS 818 (897)
Q Consensus 763 ~~c~-----------------------~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~ 818 (897)
+.|. .+..+| .+..+++|..|++++ +.+.++|. ..+.+-.|+.
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~------------e~~~lv~Lq~ 462 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE------------EMGSLVRLQT 462 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch------------hhhhhhhhhe
Confidence 3331 222222 345789999999998 46777765 4555666777
Q ss_pred eecccc----------------------cccccccC-CCCCCCCcceeeecCCccCCCCCCCCCcccc-cceEEEehh
Q 036761 819 LRLGGL----------------------TVLKSIYK-RPLPFPCLRDLTVNSCDELRKLPLDSNSAKE-RKIVIRGYR 872 (897)
Q Consensus 819 L~l~~~----------------------~~l~~~~~-~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~-~~l~i~~c~ 872 (897)
|+++.+ ..+..++. ++..|.+|..|++.+ ..+..+|......+. +.++++|.+
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 777753 22333333 255688999999987 679999987765554 999999873
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=7.4e-19 Score=195.07 Aligned_cols=235 Identities=20% Similarity=0.234 Sum_probs=128.8
Q ss_pred cCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCC-------ccccCccchhHHhcCCCCCCEEEEEe
Q 036761 615 NLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDS-------DLFSGGDLLVEALRGLEHLEVLSLTL 687 (897)
Q Consensus 615 ~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l~~L~~L~l~~ 687 (897)
+|++++++.|+ +..+|. .++.+.+|+.|....+............ .....-...+..+..+++|++|++..
T Consensus 242 nl~~~dis~n~-l~~lp~-wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNN-LSNLPE-WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhh-hhcchH-HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 44555555554 355663 3666666666666655432210000000 00000112344455677777788877
Q ss_pred CCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCC
Q 036761 688 NNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHR 767 (897)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~ 767 (897)
|++..++...... ....++.|..+.+... ..+...=..++.|+.|.+.+|.......+. ..++.+|+.|+|++| .
T Consensus 320 N~L~~lp~~~l~v-~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~--l~~~~hLKVLhLsyN-r 394 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAV-LNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPV--LVNFKHLKVLHLSYN-R 394 (1081)
T ss_pred ccccccchHHHhh-hhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhh--hccccceeeeeeccc-c
Confidence 7776665522111 1112333333333211 111111123456777777776443322222 557888899999888 7
Q ss_pred CCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeee
Q 036761 768 LKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTV 845 (897)
Q Consensus 768 l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i 845 (897)
+..+| .+.+++.|+.|+||+ +.++.++. .+..++.|++|...+ +.+..+| ....+|.|+.+++
T Consensus 395 L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~------------tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 395 LNSFPASKLRKLEELEELNLSG-NKLTTLPD------------TVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cccCCHHHHhchHHhHHHhccc-chhhhhhH------------HHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEec
Confidence 77777 466788888889988 46777654 556667777777766 4555666 5556777777777
Q ss_pred cCCccCCCC--CCCCCcccccceEEEehh
Q 036761 846 NSCDELRKL--PLDSNSAKERKIVIRGYR 872 (897)
Q Consensus 846 ~~C~~L~~l--p~~~~~~~~~~l~i~~c~ 872 (897)
+ |++|+.+ |.....+.++.|+++|..
T Consensus 460 S-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 460 S-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred c-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 5 4666653 333333445777777664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.4e-18 Score=192.90 Aligned_cols=323 Identities=23% Similarity=0.248 Sum_probs=193.4
Q ss_pred cceEeecccccccccc-cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLS-AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 599 (897)
++.+|++++|.+..+| .+..+++|+.|.++ ++.+..+|.. ..+|++|++|+|.+| .+..+|.++..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s-~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLS-RNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccc-hhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccc
Confidence 4677777777776665 34566777777777 6777777754 667777777777777 677777777777777777777
Q ss_pred CCCccccChhhhcCCc----------------------------------------CcE-ecCCCCccccccChhhhhcC
Q 036761 600 GTAIRELPKELNALEN----------------------------------------LQC-LNLEETHFLITIPRQLISSF 638 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~----------------------------------------L~~-L~L~~~~~l~~lp~~~~~~l 638 (897)
+|.+..+|..+..++. |++ |+|++|.+. .+. ...+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~-~~d---ls~~ 198 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME-VLD---LSNL 198 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh-hhh---hhhc
Confidence 7777666643322222 222 444444321 000 1111
Q ss_pred --------------------Cccceeecccc-------CCCC--CCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCC
Q 036761 639 --------------------SSLIVLRMFGV-------GDWS--PNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNN 689 (897)
Q Consensus 639 --------------------~~L~~L~l~~~-------~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (897)
++|+.|+...| .... ........+.+. ..+..+..+.+|+.+.+..|.
T Consensus 199 ~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS---NLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred cchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh---cchHHHHhcccceEecccchh
Confidence 12222322221 0000 000000111111 156778888999999999888
Q ss_pred cccHHHHHhch--------------------hccccceeEEEeccCCCcccccccccccC-CCCceeeeecCCccEEEec
Q 036761 690 FQDLQCVLKSK--------------------ELRRCTQALYLYSFKRSEPLDVSALAGLK-HLNRLWIHECEELEELEMA 748 (897)
Q Consensus 690 ~~~~~~~~~~~--------------------~~~~~L~~L~L~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~ 748 (897)
+..++.-.... ...++|++|+|..+.. ..++...+..+. .|+.|+.+.+ .+..++ .
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp-~ 352 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSN-KLSTLP-S 352 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhc-cccccc-c
Confidence 76554322111 1123455555544431 111111111111 1333333322 222221 1
Q ss_pred ccCcCCCCccEEEEeCCCCCCC--CcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccc
Q 036761 749 RQPFDFRSLKKIQIYGCHRLKD--LTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTV 826 (897)
Q Consensus 749 ~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 826 (897)
.....++.|+.|++.+| .+++ +|.+.++++|+.|+|++| .+..+|. ..+.+++.|+.|+|++ +.
T Consensus 353 ~~e~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa-----------s~~~kle~LeeL~LSG-Nk 418 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA-----------SKLRKLEELEELNLSG-NK 418 (1081)
T ss_pred ccchhhHHHHHHHHhcC-cccccchhhhccccceeeeeeccc-ccccCCH-----------HHHhchHHhHHHhccc-ch
Confidence 11345678999999998 5554 667889999999999994 5666654 2577899999999999 78
Q ss_pred cccccCCCCCCCCcceeeecCCccCCCCCCCCCcccccceEEEeh
Q 036761 827 LKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGY 871 (897)
Q Consensus 827 l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c 871 (897)
|+.+|.....+++|++|...+ +.|..+|.......++.++++..
T Consensus 419 L~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 419 LTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred hhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccc
Confidence 999998888899999998876 67888996656666688888754
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=1.7e-15 Score=174.73 Aligned_cols=255 Identities=22% Similarity=0.239 Sum_probs=159.2
Q ss_pred ccEEEEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 500 ENYLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
...+...+..+..+|.. -..+++.|.+..|+++.+|.. .++|++|+++ +|.++.+|.. .++|+.|+|++| .
T Consensus 203 ~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~l----p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPVL----PPGLLELSIFSN-P 273 (788)
T ss_pred CcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccCc----ccccceeeccCC-c
Confidence 34444455555555431 124678888888888887754 4778888888 6677777742 467888888888 6
Q ss_pred CcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCC
Q 036761 580 MSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKN 659 (897)
Q Consensus 580 ~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 659 (897)
++.+|.. ..+|+.|++++|+++.+|.. +++|++|++++|.+ ..+|.. . .+|+.|++++|....
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l-p---~~L~~L~Ls~N~L~~------ 336 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL-P---SELCKLWAYNNQLTS------ 336 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC-c---ccccccccccCcccc------
Confidence 7777753 25677888888888888763 46788888888864 556642 2 356677777665432
Q ss_pred CCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeec
Q 036761 660 DSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHEC 739 (897)
Q Consensus 660 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 739 (897)
++. + ..+|+.|++++|++..++.. ..+|+.|++++|.. ..++ . .+.+|+.|++++|
T Consensus 337 ----------LP~-l--p~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N~L-~~LP--~--l~~~L~~LdLs~N 392 (788)
T PRK15387 337 ----------LPT-L--PSGLQELSVSDNQLASLPTL------PSELYKLWAYNNRL-TSLP--A--LPSGLKELIVSGN 392 (788)
T ss_pred ----------ccc-c--ccccceEecCCCccCCCCCC------Ccccceehhhcccc-ccCc--c--cccccceEEecCC
Confidence 111 1 14688888888887765432 23566677766542 2222 1 1246777777766
Q ss_pred CCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCccccccee
Q 036761 740 EELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSL 819 (897)
Q Consensus 740 ~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L 819 (897)
. ++.++ ..+++|+.|++++| .++.+|.+ +.+|+.|++++| .++.+|. .+..+++|+.|
T Consensus 393 ~-Lt~LP-----~l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~------------sl~~L~~L~~L 450 (788)
T PRK15387 393 R-LTSLP-----VLPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE------------SLIHLSSETTV 450 (788)
T ss_pred c-ccCCC-----CcccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh------------HHhhccCCCeE
Confidence 3 33332 12457777777777 46666532 346777777764 3444443 45567777777
Q ss_pred ecccccc
Q 036761 820 RLGGLTV 826 (897)
Q Consensus 820 ~l~~~~~ 826 (897)
+|++++.
T Consensus 451 dLs~N~L 457 (788)
T PRK15387 451 NLEGNPL 457 (788)
T ss_pred ECCCCCC
Confidence 7777553
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=9.2e-18 Score=149.58 Aligned_cols=167 Identities=23% Similarity=0.389 Sum_probs=147.5
Q ss_pred ccCCCcccccccceEeecccccccccc-cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcccc
Q 036761 510 LTKPPNVREWENARRFSLMETQIRTLS-AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGIS 588 (897)
Q Consensus 510 ~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 588 (897)
+.+.+.+..++++.+|.+++|.+..+| .+..+.+|++|+++ ++.++.+|.. +++++.||.|+++-| .+..+|..|+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 345566777789999999999998875 56889999999999 9999999987 899999999999988 7889999999
Q ss_pred CccCCCEeeccCCCcc--ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccC
Q 036761 589 VLVSLQHLDLSGTAIR--ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSG 666 (897)
Q Consensus 589 ~L~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 666 (897)
.++-|+.|||.+|++. .+|..|..++.|+-|.+++|.+ +.+|++ ++++++|+.|.+.++...+
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~d-vg~lt~lqil~lrdndll~------------- 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPD-VGKLTNLQILSLRDNDLLS------------- 164 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChh-hhhhcceeEEeeccCchhh-------------
Confidence 9999999999999887 7899999999999999999986 888988 9999999999999887554
Q ss_pred ccchhHHhcCCCCCCEEEEEeCCcccHHHHH
Q 036761 667 GDLLVEALRGLEHLEVLSLTLNNFQDLQCVL 697 (897)
Q Consensus 667 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 697 (897)
.+.+++.++.|++|++.+|.+..++.-+
T Consensus 165 ---lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 165 ---LPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred ---CcHHHHHHHHHHHHhcccceeeecChhh
Confidence 7889999999999999999988766543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.55 E-value=8.6e-15 Score=168.87 Aligned_cols=255 Identities=20% Similarity=0.191 Sum_probs=192.8
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
+-..|+++.+.+..+|... .++|+.|++. +|.++.+|.. +++|++|+|++| .++.+|.. .++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~-~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIP-DNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEcc-CCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 4557889999998888632 3589999999 7888888852 689999999999 88888853 46899999999
Q ss_pred CCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 601 TAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 601 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
|.++.+|... .+|+.|++++|. +..+|.. +++|++|++++|....+ +. -..+|
T Consensus 272 N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~L----------------p~---lp~~L 324 (788)
T PRK15387 272 NPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL----------------PA---LPSEL 324 (788)
T ss_pred Cchhhhhhch---hhcCEEECcCCc-ccccccc----ccccceeECCCCccccC----------------CC---Ccccc
Confidence 9999988643 678899999997 4778752 47899999999865431 11 12467
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEE
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKI 760 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 760 (897)
+.|++++|.+..++.+ ..+|+.|+|++|.. ..++. ..++|+.|++++| .+..++ ..+++|+.|
T Consensus 325 ~~L~Ls~N~L~~LP~l------p~~Lq~LdLS~N~L-s~LP~----lp~~L~~L~Ls~N-~L~~LP-----~l~~~L~~L 387 (788)
T PRK15387 325 CKLWAYNNQLTSLPTL------PSGLQELSVSDNQL-ASLPT----LPSELYKLWAYNN-RLTSLP-----ALPSGLKEL 387 (788)
T ss_pred cccccccCcccccccc------ccccceEecCCCcc-CCCCC----CCcccceehhhcc-ccccCc-----ccccccceE
Confidence 8889999988776532 34799999998763 23321 1357888999876 455442 235689999
Q ss_pred EEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCc
Q 036761 761 QIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCL 840 (897)
Q Consensus 761 ~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 840 (897)
+|++| .++.+|.. .++|+.|++++|. +..+|. .+.+|+.|++++ +.++.+|..+..+++|
T Consensus 388 dLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~---------------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L 447 (788)
T PRK15387 388 IVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM---------------LPSGLLSLSVYR-NQLTRLPESLIHLSSE 447 (788)
T ss_pred EecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc---------------chhhhhhhhhcc-CcccccChHHhhccCC
Confidence 99998 67777643 4789999999964 554432 135788999988 5688899888889999
Q ss_pred ceeeecCCc
Q 036761 841 RDLTVNSCD 849 (897)
Q Consensus 841 ~~L~i~~C~ 849 (897)
+.|++++++
T Consensus 448 ~~LdLs~N~ 456 (788)
T PRK15387 448 TTVNLEGNP 456 (788)
T ss_pred CeEECCCCC
Confidence 999999976
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=2.5e-14 Score=166.42 Aligned_cols=113 Identities=25% Similarity=0.381 Sum_probs=49.2
Q ss_pred EeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCc
Q 036761 524 RFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAI 603 (897)
Q Consensus 524 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i 603 (897)
.|.+.++.+..+|.. -.++|+.|+++ +|.++.+|...+ ++|++|++++| .++.+|..+. .+|+.|+|++|.+
T Consensus 182 ~L~L~~~~LtsLP~~-Ip~~L~~L~Ls-~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 182 ELRLKILGLTTIPAC-IPEQITTLILD-NNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred EEEeCCCCcCcCCcc-cccCCcEEEec-CCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCcc
Confidence 344444444444321 01344555554 344444444322 24555555554 4444444332 2455555555555
Q ss_pred cccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 604 RELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 604 ~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+.+|..+. .+|+.|++++|.+ ..+|.. +. ++|++|++++|.
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~-l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKI-SCLPEN-LP--EELRYLSVYDNS 294 (754)
T ss_pred CcCChhHh--CCCCEEECcCCcc-Cccccc-cC--CCCcEEECCCCc
Confidence 55544433 3455555554432 344433 11 245555554443
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=1.6e-14 Score=168.00 Aligned_cols=241 Identities=20% Similarity=0.203 Sum_probs=147.2
Q ss_pred cCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL 585 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~ 585 (897)
.+.++...|.. -..+++.|++++|.+..+|.. .+++|++|+++ +|.++.+|..+. .+|+.|+|++| .+..+|.
T Consensus 186 ~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls-~N~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~ 258 (754)
T PRK15370 186 KILGLTTIPAC-IPEQITTLILDNNELKSLPEN-LQGNIKTLYAN-SNQLTSIPATLP---DTIQEMELSIN-RITELPE 258 (754)
T ss_pred CCCCcCcCCcc-cccCCcEEEecCCCCCcCChh-hccCCCEEECC-CCccccCChhhh---ccccEEECcCC-ccCcCCh
Confidence 34444444431 124678888888888877653 23578888888 666777776532 46888888888 6777877
Q ss_pred cccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCcccc
Q 036761 586 GISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFS 665 (897)
Q Consensus 586 ~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 665 (897)
.+. .+|++|++++|+++.+|..+. .+|++|++++|. +..+|.. +. ++|+.|++++|....
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~------------ 318 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTA------------ 318 (754)
T ss_pred hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcccc------------
Confidence 664 478888888888888887664 578888888886 4667654 22 456777777665332
Q ss_pred CccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEE
Q 036761 666 GGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEEL 745 (897)
Q Consensus 666 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 745 (897)
.+..+ .++|+.|+++.|.+..++ ..+ +++|+.|++++|. +..+
T Consensus 319 ----LP~~l--~~sL~~L~Ls~N~Lt~LP----------------------------~~l--~~sL~~L~Ls~N~-L~~L 361 (754)
T PRK15370 319 ----LPETL--PPGLKTLEAGENALTSLP----------------------------ASL--PPELQVLDVSKNQ-ITVL 361 (754)
T ss_pred ----CCccc--cccceeccccCCccccCC----------------------------hhh--cCcccEEECCCCC-CCcC
Confidence 11111 135666666555443221 011 2567777777764 3433
Q ss_pred EecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccc
Q 036761 746 EMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLT 825 (897)
Q Consensus 746 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 825 (897)
+. . .+++|+.|+|++| .++.+|.- ..++|+.|++++| .+..+|. .++.....+|++..|++.+++
T Consensus 362 P~-~---lp~~L~~LdLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~--------sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 362 PE-T---LPPTITTLDVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLPE--------SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred Ch-h---hcCCcCEEECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCch--------hHHHHhhcCCCccEEEeeCCC
Confidence 22 1 2467888888887 56666531 1246788888875 3444433 111223445777788887754
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.6e-15 Score=135.37 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=136.9
Q ss_pred cccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhh
Q 036761 531 QIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKEL 610 (897)
Q Consensus 531 ~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i 610 (897)
++.+++.+..+.+++.|.|+ .+.++.+|+. +..+.+|++|++++| .++++|.+++.++.|+.|++.-|++..+|.+|
T Consensus 22 sf~~~~gLf~~s~ITrLtLS-HNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgf 98 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLS-HNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGF 98 (264)
T ss_pred cHhhcccccchhhhhhhhcc-cCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence 34556777888999999999 8889999998 789999999999999 99999999999999999999999999999999
Q ss_pred hcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCC
Q 036761 611 NALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNN 689 (897)
Q Consensus 611 ~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 689 (897)
+.++-|+.||+.+|+..+ .+|.+ |-.++.|+-|+++++..- ..+..++++++|+.|.+..|.
T Consensus 99 gs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe----------------~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 99 GSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE----------------ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred CCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc----------------cCChhhhhhcceeEEeeccCc
Confidence 999999999999997544 46766 778999999999987632 277889999999999999888
Q ss_pred cccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeec
Q 036761 690 FQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHEC 739 (897)
Q Consensus 690 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 739 (897)
+.+++. .++.++.|++|+|.++
T Consensus 162 ll~lpk----------------------------eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 162 LLSLPK----------------------------EIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhCcH----------------------------HHHHHHHHHHHhcccc
Confidence 655432 3455667777777766
No 21
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-14 Score=168.86 Aligned_cols=318 Identities=22% Similarity=0.276 Sum_probs=197.8
Q ss_pred EEcCCCccCCCcccccccceEeeccccc--cccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 504 VYTGAGLTKPPNVREWENARRFSLMETQ--IRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
+..+......+......+++.|-+..|. +..++. |..++.|++|+|++|..+..+|.. ++++-+||||+|+++ .
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~ 606 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-G 606 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-C
Confidence 3333333334444444578999998886 666665 788999999999998889999987 899999999999999 8
Q ss_pred CcccCccccCccCCCEeeccCCC-ccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC
Q 036761 580 MSSFPLGISVLVSLQHLDLSGTA-IRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK 658 (897)
Q Consensus 580 ~~~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
+..+|.++++|..|.+||+..+. +..+|..+..|.+|++|.+..... ......++.+.+|++|....+...+.
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~--~~~~~~l~el~~Le~L~~ls~~~~s~---- 680 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL--SNDKLLLKELENLEHLENLSITISSV---- 680 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc--ccchhhHHhhhcccchhhheeecchh----
Confidence 99999999999999999999984 445566677799999999987641 11122255556666665544332210
Q ss_pred CCCccccCccchhHHhcCCCCCCE----EEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccc--cc--ccc-ccC
Q 036761 659 NDSDLFSGGDLLVEALRGLEHLEV----LSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLD--VS--ALA-GLK 729 (897)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~--~~--~l~-~l~ 729 (897)
.....+..++.|.. +.+..+.. ...........+|+.|.+.+|...+... .. ... .++
T Consensus 681 ----------~~~e~l~~~~~L~~~~~~l~~~~~~~---~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 681 ----------LLLEDLLGMTRLRSLLQSLSIEGCSK---RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred ----------HhHhhhhhhHHHHHHhHhhhhccccc---ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 12222333333332 22211111 1112223344577888888776532211 00 111 255
Q ss_pred CCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCcccccc
Q 036761 730 HLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMA 808 (897)
Q Consensus 730 ~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~ 808 (897)
++..+.+.+|..... +.| ....++|+.|.+..|..++++. ....+..++.+.+..+ .+.... ...
T Consensus 748 ~l~~~~~~~~~~~r~--l~~-~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~----------~~~ 813 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRD--LTW-LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR----------MLC 813 (889)
T ss_pred HHHHHHhhccccccc--cch-hhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce----------eee
Confidence 777888888887773 444 3468999999999998877654 3444555555444332 222110 001
Q ss_pred CCCcccccceeecccccccccccCCC----CCCCCcceeeecCC-ccCCCCCCC
Q 036761 809 NLKPFAQLYSLRLGGLTVLKSIYKRP----LPFPCLRDLTVNSC-DELRKLPLD 857 (897)
Q Consensus 809 ~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~i~~C-~~L~~lp~~ 857 (897)
..+.||++..+.+.+ +.+..+.... ..+|.+.++.+.+| +++..+|.+
T Consensus 814 ~l~~l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 814 SLGGLPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred cCCCCceeEecccCc-cchhheehhcCcccccCccccccceeccccceeecCCc
Confidence 333444444444443 2233333322 45688889999997 899999976
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=1.2e-11 Score=154.04 Aligned_cols=298 Identities=15% Similarity=0.178 Sum_probs=184.0
Q ss_pred cccCCCCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeC-CcCCHHHHHHHH
Q 036761 149 ADERPIEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVS-KDLQIEKIQEII 227 (897)
Q Consensus 149 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 227 (897)
.+|+....+|-|+.-.+.+-+. ...+++.|+|++|.||||++.++.+.. +.++|+++. .+.+...+...+
T Consensus 8 ~~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 8 SRPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHHH
Confidence 3444456778888666655322 467899999999999999999988543 258999986 445666677777
Q ss_pred HHHhCCCCch-----------hccccHHHHHHHHHHHhc--cCceEEEEecccccc--ccccccccCCCCCCCCcEEEEe
Q 036761 228 GKKVGLFNDS-----------WMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV--AFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 228 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iivT 292 (897)
+..++..... ....+.......+...+. +.+++|||||+.... ....+...+.....++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7776421110 000122333333444443 678999999995432 2222222222222223789899
Q ss_pred cCChhHh---hhcCCCceEEcC----CCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcC
Q 036761 293 TRSTEVC---GWMGAHKNFEVG----CLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACK 365 (897)
Q Consensus 293 tR~~~v~---~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~ 365 (897)
||...-. .........++. +|+.+|+.+||....+... -.+.+.+|.+.|+|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9984211 111112234555 9999999999988765432 13457889999999999999988777543
Q ss_pred CC-hHHHHHHHHHHcccCCCCCCChHHHHHHH-HHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCC
Q 036761 366 KT-PEEWRDAIKVLQTSASEFPGLENDVLRVL-KFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTG 443 (897)
Q Consensus 366 ~~-~~~w~~~~~~l~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~ 443 (897)
.. ... ....+.. . ....+...+ .-.++.||+ ..+.++...|+++ .++.+ +... +..
T Consensus 233 ~~~~~~---~~~~~~~----~--~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~~-----l~~--- 290 (903)
T PRK04841 233 NSSLHD---SARRLAG----I--NASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIVR-----VTG--- 290 (903)
T ss_pred CCchhh---hhHhhcC----C--CchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHHH-----HcC---
Confidence 21 111 1111100 0 012354443 334789999 8999999999986 23322 2221 111
Q ss_pred cchhhhhHHHHHHHHHHhccccc-c--CCceEEechhHHHHHHHHHh
Q 036761 444 KYEVQDKGHTILGNIVHACLLEE-E--GDDVVKMHDLIRDMTLWIAR 487 (897)
Q Consensus 444 ~~~~~~~~~~~l~~L~~~~ll~~-~--~~~~~~mHdlv~~~a~~~~~ 487 (897)
.+.+...+++|.+.+++.. . +...|+.|++++++.+....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 2345778999999999653 2 33579999999999987653
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=8.7e-15 Score=147.97 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=96.8
Q ss_pred EEEcCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++.++|.- -......+.+..|.|+.+|+ |..+++||.|+|+ +|.|+.|.++.|.+++.|-.|-+.++..|
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 33445555555421 11355667777777777763 5677777777777 67777777777777777777766664477
Q ss_pred cccCcc-ccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 581 SSFPLG-ISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+.+|.. |++|..|+.|.+.-|++..++. .+..|++|..|.+.+|.+ ..++.+.+..+..++++.+..+.
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCc
Confidence 777754 6777777777777777776554 467777777777777763 66676667777777777666544
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.39 E-value=1e-14 Score=147.57 Aligned_cols=122 Identities=27% Similarity=0.334 Sum_probs=100.3
Q ss_pred ccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc-cCccccCccCCCEeeccC-CCccc
Q 036761 528 METQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS-FPLGISVLVSLQHLDLSG-TAIRE 605 (897)
Q Consensus 528 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~-~~i~~ 605 (897)
.+..+.++|.- --+.-..+.|. .|.|+.+|+..|+.+++||.||||+| .|+. -|..|.+|.+|..|-+-+ |+|+.
T Consensus 54 r~~GL~eVP~~-LP~~tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 54 RGKGLTEVPAN-LPPETVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cCCCcccCccc-CCCcceEEEec-cCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 34455555531 12345677787 88999999999999999999999999 6665 588899999998887776 89999
Q ss_pred cChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCC
Q 036761 606 LPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWS 653 (897)
Q Consensus 606 lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 653 (897)
+|.. |++|..|+.|.+.-|+ +.-++.+.+..|++|..|.++++.+..
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhh
Confidence 9986 8999999999999998 477888889999999999999987544
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=2.2e-10 Score=127.70 Aligned_cols=296 Identities=13% Similarity=0.081 Sum_probs=171.4
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
+.++||++++++|...+.+ ...+.+.|+|++|+|||++++.++++.......-..+++++....+...++..+..+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 6789999999999988743 345678899999999999999999987433323456777777777888999999999
Q ss_pred hCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc------ccccccccCCCCCCCCcEEEEecCChhHhhhc
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV------AFTTVGVPIPPRDKSASKVVFTTRSTEVCGWM 302 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~ 302 (897)
+..........+.++....+.+.+. +++.+||||+++... .+..+.............+|.++....+....
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence 8752211123345667777777775 456899999997532 12222221111111013366666654432211
Q ss_pred C-------CCceEEcCCCChHHHHHHHHHHhCCC---ccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhh--h--cC---
Q 036761 303 G-------AHKNFEVGCLSANDARELFRQNVGEE---TLNGHPDIRELSETVTKECGSLPLALIITGRAM--A--CK--- 365 (897)
Q Consensus 303 ~-------~~~~~~l~~L~~~e~~~lf~~~~~~~---~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l--~--~~--- 365 (897)
. ....+.+++++.++..+++..++... ..-.+..++.+++......|..+.|+.++-.+. + ..
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 12467999999999999999876321 111222223333333333466777776654322 1 11
Q ss_pred CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhcc-CC-CCcccChhhHHHHH--HhcCcccc
Q 036761 366 KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCL-FP-EDYRIYKENLIDCW--IGEGFLKV 441 (897)
Q Consensus 366 ~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~-fp-~~~~i~~~~li~~w--~aeg~i~~ 441 (897)
-+.+....+.+... .....-.+..||. +.|..+..++. .. ....+...++.... +++.+-..
T Consensus 270 I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 270 VTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred cCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 24555555554331 1233446789997 44444333331 21 11234555544321 22111000
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccc
Q 036761 442 TGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 442 ~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
.-.......|++.|...+++...
T Consensus 336 ---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 ---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 01124456689999999998753
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=1.6e-12 Score=140.95 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=18.0
Q ss_pred CCCCccEEEEeCCCCCCCCc--ccc-----cCCCccEEEEecCc
Q 036761 753 DFRSLKKIQIYGCHRLKDLT--FLL-----FAPNLKSIEVSSCF 789 (897)
Q Consensus 753 ~l~~L~~L~L~~c~~l~~l~--~l~-----~l~~L~~L~L~~c~ 789 (897)
.+++|++|++++| .+++.. .+. ..+.|++|++++|.
T Consensus 219 ~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 219 SLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 4556666666666 333211 111 12566666666653
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.9e-09 Score=113.32 Aligned_cols=181 Identities=13% Similarity=0.186 Sum_probs=114.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
...+++.|+|++|+||||+++.+++.... ..+ ...|+ +....+..+++..++..++.+.. ..+.......+...
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELEDF 114 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHHH
Confidence 44568999999999999999999988742 211 22333 33345778899999999887542 12222333333332
Q ss_pred -----hccCceEEEEecccccc--ccccccccC---CCCCCCCcEEEEecCChhHhhhc----------CCCceEEcCCC
Q 036761 254 -----LKEKKFVLLLDDVWQRV--AFTTVGVPI---PPRDKSASKVVFTTRSTEVCGWM----------GAHKNFEVGCL 313 (897)
Q Consensus 254 -----l~~~~~LlVlDdv~~~~--~~~~~~~~l---~~~~~~~s~iivTtR~~~v~~~~----------~~~~~~~l~~L 313 (897)
..+++.++|+||++... .++.+.... ...... ..|++|.... ....+ .....+.++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~-~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL-LQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCe-EEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 25788999999998642 344432111 111111 3456665442 21111 11345789999
Q ss_pred ChHHHHHHHHHHhCCCccCC-CCcHHHHHHHHHHHcCCcchHHHHHHhhh
Q 036761 314 SANDARELFRQNVGEETLNG-HPDIRELSETVTKECGSLPLALIITGRAM 362 (897)
Q Consensus 314 ~~~e~~~lf~~~~~~~~~~~-~~~~~~~~~~i~~~~~glPlai~~~~~~l 362 (897)
+.+|..+++...+....... ..-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999988764322111 12235789999999999999999888776
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.22 E-value=6.9e-11 Score=121.73 Aligned_cols=195 Identities=20% Similarity=0.237 Sum_probs=102.7
Q ss_pred CccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH----------
Q 036761 157 TVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI---------- 226 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~---------- 226 (897)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++++.+... ..-..++|+..............
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~--~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK--EKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh--hcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 689999999999999877789999999999999999999999872 21123444444443322221111
Q ss_pred ---HHHHhCCCCc-h---hccccHHHHHHHHHHHhc--cCceEEEEecccccc-cc-------ccc---cccCCCCCCCC
Q 036761 227 ---IGKKVGLFND-S---WMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV-AF-------TTV---GVPIPPRDKSA 286 (897)
Q Consensus 227 ---i~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~~-------~~~---~~~l~~~~~~~ 286 (897)
+...+..... . ............+.+.+. +++++||+||+.... .. ..+ ........+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 156 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN-- 156 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT--
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC--
Confidence 1111111000 0 011122223333444443 345999999996544 11 111 112222222
Q ss_pred cEEEEecCChhHhhh--------cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 287 SKVVFTTRSTEVCGW--------MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 287 s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
..+|+++........ .+....+.+++|+.+++++++...+... ... +.-.+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555555444322 2233459999999999999999976433 111 22345579999999999998764
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=8.5e-13 Score=135.04 Aligned_cols=302 Identities=17% Similarity=0.196 Sum_probs=135.7
Q ss_pred cceeeehhccccccccc-hhhhcCCCcccEEEccCCCCCccc--CccccCccCCCEeeccCC-Cccc--cChhhhcCCcC
Q 036761 543 HLLTLFLIFNEELEMIT-SDFFKSMPRLKVLNLSGARRMSSF--PLGISVLVSLQHLDLSGT-AIRE--LPKELNALENL 616 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~Ls~~~~~~~l--p~~i~~L~~L~~L~L~~~-~i~~--lp~~i~~L~~L 616 (897)
.|+.|.+.++.....-+ ..+...++++..|++.+|..+++- -..-..+.+|++|++..| .|+. |-.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45666666554433322 123455667777777776544431 111134556666666664 4442 11123345666
Q ss_pred cEecCCCCccccccC-hhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHH
Q 036761 617 QCLNLEETHFLITIP-RQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQC 695 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 695 (897)
++|+++.|..+..-. .....++.+|+.+...+| .-..++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC---------------------------------------~e~~le~ 259 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC---------------------------------------LELELEA 259 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc---------------------------------------ccccHHH
Confidence 666666664322100 011233334444433333 2222222
Q ss_pred HHhchhccccceeEEEeccCCCcccccccc-cccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--
Q 036761 696 VLKSKELRRCTQALYLYSFKRSEPLDVSAL-AGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-- 772 (897)
Q Consensus 696 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-- 772 (897)
+........-+..+++..|..+++...-.+ ..+..|+.|..++|....+........+.++|+.|.+++|..+++..
T Consensus 260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence 222222222233333334433333221111 13445555665555554432222223345566666666665444332
Q ss_pred ccc-cCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccc-----cCCCCCCCCcceeeec
Q 036761 773 FLL-FAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSI-----YKRPLPFPCLRDLTVN 846 (897)
Q Consensus 773 ~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~~~~~~l~~L~~L~i~ 846 (897)
.++ +.+.|+.|++..|..+.+. .+.....++|.|+.|.+++|...+.- .....++..|+.+.+.
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~----------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG----------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhhcCChhhhhhcccccceehhh----------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 122 3556666666665544332 01112345566666666666554433 1122334556666666
Q ss_pred CCccCCCCCCCC--CcccccceEEEehh----hhhcccccccccccccccCCccc
Q 036761 847 SCDELRKLPLDS--NSAKERKIVIRGYR----KWWEQLKWVDQDTKNAFLPCFRS 895 (897)
Q Consensus 847 ~C~~L~~lp~~~--~~~~~~~l~i~~c~----~~~~~l~~~~~~~~~~~~~~~~~ 895 (897)
+||.+++--... ....++.+++.+|. +-..++.-.-+++| ++.||++
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~--v~a~~a~ 462 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIK--VHAYFAP 462 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccce--ehhhccC
Confidence 666665532221 11223556666662 33344444445555 3455544
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=4e-12 Score=137.81 Aligned_cols=214 Identities=21% Similarity=0.162 Sum_probs=99.9
Q ss_pred hcCCCcccEEEccCCCCCc-------ccCccccCccCCCEeeccCCCcc-ccChhhhcCCc---CcEecCCCCcccc---
Q 036761 563 FKSMPRLKVLNLSGARRMS-------SFPLGISVLVSLQHLDLSGTAIR-ELPKELNALEN---LQCLNLEETHFLI--- 628 (897)
Q Consensus 563 ~~~l~~L~~L~Ls~~~~~~-------~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~--- 628 (897)
+...+.|+.|+++++ .+. .++..+..+++|++|++++|.+. ..+..+..+.+ |++|++++|.+..
T Consensus 47 l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 47 LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 334445555555554 222 12233444555555555555544 22333333333 5555555554321
Q ss_pred -ccChhhhhcC-CccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc--HHHHHhchhccc
Q 036761 629 -TIPRQLISSF-SSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD--LQCVLKSKELRR 704 (897)
Q Consensus 629 -~lp~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~ 704 (897)
.+... +..+ ++|+.|++++|..... +.......+..+++|+.|++++|.+.. +..+.......+
T Consensus 126 ~~l~~~-l~~~~~~L~~L~L~~n~l~~~-----------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~ 193 (319)
T cd00116 126 RLLAKG-LKDLPPALEKLVLGRNRLEGA-----------SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC 193 (319)
T ss_pred HHHHHH-HHhCCCCceEEEcCCCcCCch-----------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC
Confidence 11111 3333 5555555555443210 001123334445555555555555442 111111111223
Q ss_pred cceeEEEeccCCCcccc---cccccccCCCCceeeeecCCccEEEeccc----CcCCCCccEEEEeCCCCCCCC------
Q 036761 705 CTQALYLYSFKRSEPLD---VSALAGLKHLNRLWIHECEELEELEMARQ----PFDFRSLKKIQIYGCHRLKDL------ 771 (897)
Q Consensus 705 ~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~l~~l~~~~~----~~~l~~L~~L~L~~c~~l~~l------ 771 (897)
+|+.|++++|....... ...+..+++|++|++++|.. ........ ....+.|++|++++| .+++.
T Consensus 194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~ 271 (319)
T cd00116 194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLA 271 (319)
T ss_pred CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHH
Confidence 55555555553211100 11345678888999888743 21111110 112478999999998 45421
Q ss_pred cccccCCCccEEEEecCchh
Q 036761 772 TFLLFAPNLKSIEVSSCFAM 791 (897)
Q Consensus 772 ~~l~~l~~L~~L~L~~c~~l 791 (897)
..+..+++|++|++++|..-
T Consensus 272 ~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 272 EVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcCCCccEEECCCCCCc
Confidence 12345688999999886543
No 31
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=3.2e-09 Score=117.03 Aligned_cols=295 Identities=14% Similarity=0.108 Sum_probs=170.4
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCC-CCC---CEEEEEEeCCcCCHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ-GDF---DFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~~~~~~~~~~~~~ 226 (897)
+.++||++++++|..++.+ ...+.+.|+|++|+|||++++.+++..... ... -..+|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 5789999999999998864 345689999999999999999999875321 111 24677888777788899999
Q ss_pred HHHHhC---CCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc-c----ccccccc--CCCCCCCCcEEEEecC
Q 036761 227 IGKKVG---LFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV-A----FTTVGVP--IPPRDKSASKVVFTTR 294 (897)
Q Consensus 227 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~~s~iivTtR 294 (897)
|++++. ...+. ...+..+....+.+.+. +++++||||+++... . +..+... ..........+|++|.
T Consensus 95 i~~~l~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPT-TGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 22111 12244555566666664 567899999997641 1 1122111 1111111145566665
Q ss_pred ChhHhhhcC-------CCceEEcCCCChHHHHHHHHHHhCC--CccCCCCcHHHHHHHHHHHcCCcchHHH-HHHhhh--
Q 036761 295 STEVCGWMG-------AHKNFEVGCLSANDARELFRQNVGE--ETLNGHPDIRELSETVTKECGSLPLALI-ITGRAM-- 362 (897)
Q Consensus 295 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~glPlai~-~~~~~l-- 362 (897)
.......+. ....+.+++++.+|..+++..++.. ....-+++..+....++....|.|-.+. ++-.+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211110 1246899999999999999988741 1111233333455566777778875443 222211
Q ss_pred h--c---CCChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccC--CCCcccChhhHHHHHH-
Q 036761 363 A--C---KKTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLF--PEDYRIYKENLIDCWI- 434 (897)
Q Consensus 363 ~--~---~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~li~~w~- 434 (897)
. . .-+.+..+.+.+.+. .....-++..||. +.+..+..+... ..+..+...++...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 1 1 124444444444331 1223446678887 555444443311 1334456666655331
Q ss_pred -hcCccccCCcchhhhhHHHHHHHHHHhcccccc
Q 036761 435 -GEGFLKVTGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 435 -aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
++.+ .. ..........+++.|...|++...
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 2211 10 112346677788999999998764
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.10 E-value=2.7e-09 Score=119.81 Aligned_cols=300 Identities=15% Similarity=0.174 Sum_probs=194.1
Q ss_pred ccccccCCCCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHH
Q 036761 146 ESVADERPIEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQ 224 (897)
Q Consensus 146 ~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~ 224 (897)
+..+.|.+....|-|..-++.+.+. ...+.+.|..|+|.|||||+.+.+... ..-..+.|.+++.. .++..+.
T Consensus 10 sk~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~ 83 (894)
T COG2909 10 SKLVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFL 83 (894)
T ss_pred cccCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHH
Confidence 3344455556677777555544332 378999999999999999999998733 33467999998754 5788888
Q ss_pred HHHHHHhCCCCch-----------hccccHHHHHHHHHHHhc--cCceEEEEecccc---cc---ccccccccCCCCCCC
Q 036761 225 EIIGKKVGLFNDS-----------WMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQ---RV---AFTTVGVPIPPRDKS 285 (897)
Q Consensus 225 ~~i~~~l~~~~~~-----------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~---~~---~~~~~~~~l~~~~~~ 285 (897)
.-++..++.-.+. ....+...+...+...+. .++..+||||..- +. ....+....| .+
T Consensus 84 ~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~ 160 (894)
T COG2909 84 SYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---EN 160 (894)
T ss_pred HHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CC
Confidence 8888888632211 112233444555555444 3689999999742 21 2223333333 33
Q ss_pred CcEEEEecCChhHhh---hcCCCceEEc----CCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 286 ASKVVFTTRSTEVCG---WMGAHKNFEV----GCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 286 ~s~iivTtR~~~v~~---~~~~~~~~~l----~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
-.+|||||+..-.. .--....+++ =.++.+|+-++|....+..- -+.-.+.+.+...|-+-|+..+
T Consensus 161 -l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 161 -LTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred -eEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHH
Confidence 88999999975321 1111122222 36889999999998864332 1334788999999999999988
Q ss_pred HhhhhcCCChHHHHHHHHHHcccCCCCCCChHHHHH-HHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcC
Q 036761 359 GRAMACKKTPEEWRDAIKVLQTSASEFPGLENDVLR-VLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEG 437 (897)
Q Consensus 359 ~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~-~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg 437 (897)
+=.++.+.+.+.-... +.+....+.. ...--++.||+ .++.+++-||+++.- -.+|+..-
T Consensus 234 aLa~~~~~~~~q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~L---- 294 (894)
T COG2909 234 ALALRNNTSAEQSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNAL---- 294 (894)
T ss_pred HHHccCCCcHHHHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHH----
Confidence 8777743333322211 1111122222 33446789999 899999999998532 12333322
Q ss_pred ccccCCcchhhhhHHHHHHHHHHhcccccc---CCceEEechhHHHHHHHHHhc
Q 036761 438 FLKVTGKYEVQDKGHTILGNIVHACLLEEE---GDDVVKMHDLIRDMTLWIARD 488 (897)
Q Consensus 438 ~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~~ 488 (897)
+.++.+...+++|.+++|+-.. ....|+.|.+..||-+.-...
T Consensus 295 --------tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 --------TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred --------hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 3356677889999999997643 678999999999998866544
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=8.1e-11 Score=111.54 Aligned_cols=114 Identities=27% Similarity=0.401 Sum_probs=25.1
Q ss_pred cccccccccCCccceeeehhccccccccchhhhc-CCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChh
Q 036761 531 QIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFK-SMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKE 609 (897)
Q Consensus 531 ~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~ 609 (897)
.++..+...++.+++.|+|. ++.+..+.. ++ .+.+|+.|+|++| .++.++ .+..+++|++|++++|.|+.++..
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~-~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLR-GNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -----------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccccc-ccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 33444444444555555555 444444432 22 3455555555555 555554 455555555555555555555444
Q ss_pred h-hcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccC
Q 036761 610 L-NALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 610 i-~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~ 650 (897)
+ ..+++|++|++++|.+ ..+.. ..+..+++|++|++.+|.
T Consensus 83 l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCc
Confidence 3 2455555555555543 22111 114455555555555544
No 34
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.08 E-value=9.5e-09 Score=110.08 Aligned_cols=273 Identities=14% Similarity=0.106 Sum_probs=150.9
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.+|||+++.+++|..++.. .....+.|+|++|+|||+||+.+++... ..+ ..+..+.......+ ...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~l-~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGDL-AAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchhH-HHHHH
Confidence 4689999999999888862 3456788999999999999999999873 222 12222111122222 22223
Q ss_pred HhCCCC----chhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhhc--C
Q 036761 230 KVGLFN----DSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWM--G 303 (897)
Q Consensus 230 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~--~ 303 (897)
.++... +.....+ ......+...+.+.+..+|+|+..+...+.. .++ .. +-|..||+...+.... .
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~---~~-~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLP---PF-TLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cCC---Ce-EEEEecCCccccCHHHHhh
Confidence 332211 0001111 1233456666777777778877655544432 122 12 6667777765442211 1
Q ss_pred CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHcccCC
Q 036761 304 AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQTSAS 383 (897)
Q Consensus 304 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 383 (897)
....+.+++++.+|..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. .......
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCc
Confidence 2346799999999999999988864332222 4567889999999997665444432 11100 0000000
Q ss_pred CCCCChHHHHHHHHHhhCCCCCccchhhhh-hhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHHHH-HHHHh
Q 036761 384 EFPGLENDVLRVLKFSYDSLPDDTTRSCLL-YCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTILG-NIVHA 461 (897)
Q Consensus 384 ~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~~~ 461 (897)
. ...-......+...|..+++ +.+..+. ....++.+ .+..+++.... | .....++..++ .|+++
T Consensus 218 t-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 218 N-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred C-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHc
Confidence 0 00001222224556777877 5555454 43555433 34444333322 1 12345566677 69999
Q ss_pred cccccc
Q 036761 462 CLLEEE 467 (897)
Q Consensus 462 ~ll~~~ 467 (897)
+|++..
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999764
No 35
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=2.8e-08 Score=107.08 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=148.3
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
++|+|+++.++.+..++.. ...+.+.|+|++|+||||||+.+++.... .+ .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-cccChHHHHHHHH
Confidence 6789999999998877642 34567899999999999999999998732 21 122211 1111122233333
Q ss_pred HhCCCC----chhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhhc--C
Q 036761 230 KVGLFN----DSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWM--G 303 (897)
Q Consensus 230 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~--~ 303 (897)
.+.... +.....+ ....+.+...+.+.+..+|+|+..+...+.. .++. . +-|..|+|...+.... .
T Consensus 99 ~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~~---~-~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLPP---F-TLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCccccceee---cCCC---c-eEEeecCCcccCCHHHHHh
Confidence 332111 0000000 1122334555566666667766544332211 1111 2 5666777754432211 1
Q ss_pred CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHcccCC
Q 036761 304 AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQTSAS 383 (897)
Q Consensus 304 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 383 (897)
....+.+++++.++..+++...+.......+ .+....|++.|+|.|-.+..+...+. .|.... .....
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCC
Confidence 2346899999999999999998865442222 35689999999999965554443321 121110 00000
Q ss_pred CCCCChHHHHHHHHHhhCCCCCccchhhhh-hhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHHHH-HHHHh
Q 036761 384 EFPGLENDVLRVLKFSYDSLPDDTTRSCLL-YCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTILG-NIVHA 461 (897)
Q Consensus 384 ~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~-~L~~~ 461 (897)
. ...-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.++..++ .|++.
T Consensus 239 ~-~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 239 T-KEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLIQQ 304 (328)
T ss_pred C-HHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHHHc
Confidence 0 00011233445556777776 4555553 55566654 34444443322 1 12334444556 78888
Q ss_pred cccccc
Q 036761 462 CLLEEE 467 (897)
Q Consensus 462 ~ll~~~ 467 (897)
+|++..
T Consensus 305 ~li~~~ 310 (328)
T PRK00080 305 GFIQRT 310 (328)
T ss_pred CCcccC
Confidence 888754
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=1.8e-10 Score=109.19 Aligned_cols=130 Identities=32% Similarity=0.359 Sum_probs=56.5
Q ss_pred cccccccceEeeccccccccccccc-CCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccc-cCccC
Q 036761 515 NVREWENARRFSLMETQIRTLSAVP-TCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGI-SVLVS 592 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~L~~ 592 (897)
...+..+++.|++.+|.+..+..+. .+.+|++|+++ +|.++.++. +..++.|+.|++++| .++.++..+ ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCc
Confidence 3334457899999999999998886 58899999999 888998875 888999999999999 888887655 46899
Q ss_pred CCEeeccCCCccccC--hhhhcCCcCcEecCCCCccccccC---hhhhhcCCccceeecccc
Q 036761 593 LQHLDLSGTAIRELP--KELNALENLQCLNLEETHFLITIP---RQLISSFSSLIVLRMFGV 649 (897)
Q Consensus 593 L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp---~~~~~~l~~L~~L~l~~~ 649 (897)
|++|++++|+|..+- ..+..+++|++|++.+|++.. .+ .-++..+++|+.|+-...
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence 999999999988664 357789999999999998643 23 235788999999987654
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.8e-11 Score=120.83 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=53.2
Q ss_pred cCCccceeeehhccccccccch-hhhcCCCcccEEEccCCCCCcc---cCccccCccCCCEeeccCCCccccChh--hhc
Q 036761 539 PTCLHLLTLFLIFNEELEMITS-DFFKSMPRLKVLNLSGARRMSS---FPLGISVLVSLQHLDLSGTAIRELPKE--LNA 612 (897)
Q Consensus 539 ~~~~~L~~L~l~~~~~l~~l~~-~~~~~l~~L~~L~Ls~~~~~~~---lp~~i~~L~~L~~L~L~~~~i~~lp~~--i~~ 612 (897)
+++++|+...|. +..+...+. .....|++++.||||.| .+.. +-.-...|++|+.|+|+.|++...-.+ -..
T Consensus 118 sn~kkL~~IsLd-n~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLD-NYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeec-CccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 345566666666 444443332 23455666666666666 3332 222234566666666666655422211 224
Q ss_pred CCcCcEecCCCCccccccChhhhhcCCccceeecccc
Q 036761 613 LENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGV 649 (897)
Q Consensus 613 L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 649 (897)
++.|+.|.|++|.+...--......+++|..|++..|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 4555666666665322111112344555555555554
No 38
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=3.1e-09 Score=102.79 Aligned_cols=142 Identities=16% Similarity=0.249 Sum_probs=89.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCEEEEEEeCCcCCHH---HHHHHHHHHhCCCCchhccccHHHHHHH
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGD----FDFLIWVVVSKDLQIE---KIQEIIGKKVGLFNDSWMKKNLAERAVD 249 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 249 (897)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...|..+..... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 58999999999999999999988764333 4466777766544332 34444444433211 11111 1
Q ss_pred HHHH-hccCceEEEEeccccccc---------ccccc-ccCCCCCCCCcEEEEecCChhH---hhhcCCCceEEcCCCCh
Q 036761 250 IYNV-LKEKKFVLLLDDVWQRVA---------FTTVG-VPIPPRDKSASKVVFTTRSTEV---CGWMGAHKNFEVGCLSA 315 (897)
Q Consensus 250 l~~~-l~~~~~LlVlDdv~~~~~---------~~~~~-~~l~~~~~~~s~iivTtR~~~v---~~~~~~~~~~~l~~L~~ 315 (897)
+... -..++++||+|++++... +..+. ..++.....+.++|||+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 256899999999975322 11111 1222212223899999999766 33344556799999999
Q ss_pred HHHHHHHHHHh
Q 036761 316 NDARELFRQNV 326 (897)
Q Consensus 316 ~e~~~lf~~~~ 326 (897)
++..+++.+..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.94 E-value=4e-11 Score=122.99 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=74.8
Q ss_pred cceEeeccccccccccc----ccCCccceeeehhccccccccc-hhhhcCCCcccEEEccCCCCCccc--CccccCccCC
Q 036761 521 NARRFSLMETQIRTLSA----VPTCLHLLTLFLIFNEELEMIT-SDFFKSMPRLKVLNLSGARRMSSF--PLGISVLVSL 593 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~Ls~~~~~~~l--p~~i~~L~~L 593 (897)
.++.|++.++.-....+ ...|++++.|.+.++..+++.. ..+-..++.|++|+|..|..++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777765433322 2689999999999887766544 233467899999999998777753 2234578999
Q ss_pred CEeeccCC-Cccc--cChhhhcCCcCcEecCCCCc
Q 036761 594 QHLDLSGT-AIRE--LPKELNALENLQCLNLEETH 625 (897)
Q Consensus 594 ~~L~L~~~-~i~~--lp~~i~~L~~L~~L~L~~~~ 625 (897)
+||++++| .|+. +-.-...+.+|+.+.+.||.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 99999998 4553 43445667778888888884
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=8.4e-11 Score=124.99 Aligned_cols=169 Identities=28% Similarity=0.352 Sum_probs=82.1
Q ss_pred eEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 601 (897)
..+.+..|.+..+|. ..++..|.+|+|+ .|.+..+|.. ++.| -|++|-+++| +++.+|..++.+.+|..||.+.|
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls-~NqlS~lp~~-lC~l-pLkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~n 176 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLS-SNQLSHLPDG-LCDL-PLKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKN 176 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhc-cchhhcCChh-hhcC-cceeEEEecC-ccccCCcccccchhHHHhhhhhh
Confidence 333444444444432 2344445555555 4444444444 2222 2455555555 45555555555555555555555
Q ss_pred CccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCC
Q 036761 602 AIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLE 681 (897)
Q Consensus 602 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 681 (897)
.+..+|..++.|.+|+.|+++.|+ +..+|.+ +..| .|..|+++.|++.. ++..|.+|++|+
T Consensus 177 ei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~----------------iPv~fr~m~~Lq 237 (722)
T KOG0532|consen 177 EIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISY----------------LPVDFRKMRHLQ 237 (722)
T ss_pred hhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceee----------------cchhhhhhhhhe
Confidence 555555555555555555555554 3445544 3322 35555555544322 455566666666
Q ss_pred EEEEEeCCcccHHHHHhchhccccceeEEEecc
Q 036761 682 VLSLTLNNFQDLQCVLKSKELRRCTQALYLYSF 714 (897)
Q Consensus 682 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 714 (897)
+|.|.+|.+.+-+.-........-.+.|+...|
T Consensus 238 ~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 238 VLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 666666666554444333333333344444444
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.88 E-value=4e-08 Score=117.39 Aligned_cols=311 Identities=16% Similarity=0.191 Sum_probs=178.8
Q ss_pred CCccchHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcccCC-CCCCEEEEEEeCCcC---CHHHHHHHHH
Q 036761 156 PTVGMQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ-GDFDFLIWVVVSKDL---QIEKIQEIIG 228 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~~~~~---~~~~~~~~i~ 228 (897)
+++||+.+++.|...+.+ +...++.+.|..|||||+|++.|......+ +.|-...+-...... ...+.+++++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 368999999999988864 567799999999999999999999877432 222111111111221 2223344444
Q ss_pred HHh-------------------CCCCch--------------------hccccHHH-----HHHHHHHHh-ccCceEEEE
Q 036761 229 KKV-------------------GLFNDS--------------------WMKKNLAE-----RAVDIYNVL-KEKKFVLLL 263 (897)
Q Consensus 229 ~~l-------------------~~~~~~--------------------~~~~~~~~-----~~~~l~~~l-~~~~~LlVl 263 (897)
.++ +..... ..+...+. ....+..+. +.|+.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 433 111100 00001111 111222333 356999999
Q ss_pred ecc-ccc-cccccccccCCCC---CCCCcEEEEe--cCCh--hHhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCC
Q 036761 264 DDV-WQR-VAFTTVGVPIPPR---DKSASKVVFT--TRST--EVCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGH 334 (897)
Q Consensus 264 Ddv-~~~-~~~~~~~~~l~~~---~~~~s~iivT--tR~~--~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~ 334 (897)
||+ |-+ ..++-+......- ......|..+ .+.. .+.........|.|.||+..+.-.+.....+...
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999 532 2222111111000 0000123333 3322 1222233446799999999999999999987643
Q ss_pred CcHHHHHHHHHHHcCCcchHHHHHHhhhhcC------CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccc
Q 036761 335 PDIRELSETVTKECGSLPLALIITGRAMACK------KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTT 408 (897)
Q Consensus 335 ~~~~~~~~~i~~~~~glPlai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~ 408 (897)
+...+..+.|+++..|+|+.+..+-..+... .+...|..-...+.. ++..++|...+..-.+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HH
Confidence 2234568999999999999999998888763 344555443322221 12223466678889999998 89
Q ss_pred hhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHHHHHHHHhcccccc-------CCce---EEechhH
Q 036761 409 RSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTILGNIVHACLLEEE-------GDDV---VKMHDLI 478 (897)
Q Consensus 409 k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-------~~~~---~~mHdlv 478 (897)
++.+-..+++... ++...|...|-. .....+....+.|....++... .... -..||.|
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 9999999998644 445555554421 1234455555555555554321 1222 2688998
Q ss_pred HHHHHHHHhc
Q 036761 479 RDMTLWIARD 488 (897)
Q Consensus 479 ~~~a~~~~~~ 488 (897)
++.|...-.+
T Consensus 379 qqaaY~~i~~ 388 (849)
T COG3899 379 QQAAYNLIPE 388 (849)
T ss_pred HHHHhccCch
Confidence 8887655433
No 42
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=1.8e-08 Score=102.20 Aligned_cols=153 Identities=12% Similarity=0.144 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
..+.+.|+|++|+|||+||+.+++....+ ...+.|+.+.... ... ..+.+.+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~-----------------------~~~~~~~ 89 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFS-----------------------PAVLENL 89 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhh-----------------------HHHHhhc
Confidence 44678999999999999999999986322 3345666653110 000 0111122
Q ss_pred ccCceEEEEeccccc---ccccc-ccccCCCCCCCCcEEE-EecCC---------hhHhhhcCCCceEEcCCCChHHHHH
Q 036761 255 KEKKFVLLLDDVWQR---VAFTT-VGVPIPPRDKSASKVV-FTTRS---------TEVCGWMGAHKNFEVGCLSANDARE 320 (897)
Q Consensus 255 ~~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~ii-vTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~ 320 (897)
+ +.-+|++||+|.. ..|+. +...+......+..+| +|++. +.+.+++.....+++++++.++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 2 2348999999863 34442 2222222111124554 45544 3556666667789999999999999
Q ss_pred HHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 321 LFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 321 lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
++++.+.......+ +++..-|++.+.|..-.+..+-
T Consensus 169 iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 169 VLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 99998864432222 4567888888887766554433
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=7.6e-10 Score=108.36 Aligned_cols=129 Identities=24% Similarity=0.264 Sum_probs=96.3
Q ss_pred CCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceee
Q 036761 566 MPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLR 645 (897)
Q Consensus 566 l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~ 645 (897)
.+.|..||||+| .++.+..++.-++.++.|++|+|.|..+.. +..|++|++|||++|. +..+.. .-.+|.|.++|.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~G-wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVG-WHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhh-hHhhhcCEeeee
Confidence 356888899988 888888888888889999999998888754 8888899999999886 355543 256788888888
Q ss_pred ccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccc
Q 036761 646 MFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSAL 725 (897)
Q Consensus 646 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l 725 (897)
+.+|.+- ....++.|-+|..|+++.|++..+... ..+
T Consensus 359 La~N~iE-----------------~LSGL~KLYSLvnLDl~~N~Ie~ldeV--------------------------~~I 395 (490)
T KOG1259|consen 359 LAQNKIE-----------------TLSGLRKLYSLVNLDLSSNQIEELDEV--------------------------NHI 395 (490)
T ss_pred hhhhhHh-----------------hhhhhHhhhhheeccccccchhhHHHh--------------------------ccc
Confidence 8876543 455677777888888888887765432 245
Q ss_pred cccCCCCceeeeecCC
Q 036761 726 AGLKHLNRLWIHECEE 741 (897)
Q Consensus 726 ~~l~~L~~L~l~~~~~ 741 (897)
+++|.|+.|.+.+|+.
T Consensus 396 G~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 396 GNLPCLETLRLTGNPL 411 (490)
T ss_pred ccccHHHHHhhcCCCc
Confidence 6667777777766653
No 44
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=2e-07 Score=103.57 Aligned_cols=175 Identities=14% Similarity=0.151 Sum_probs=106.4
Q ss_pred CCCccchHHHHH---HHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDK---VWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 230 (897)
+++||++..+.. +.+++..+..+.+.|+|++|+||||+|+.+++.. ...| +.++... .... .+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~~-----~~l~a~~~~~~~-ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT--DAPF-----EALSAVTSGVKD-LREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh--CCCE-----EEEecccccHHH-HHHHH--
Confidence 678999988766 8888877777888999999999999999999876 3332 2222111 1111 11111
Q ss_pred hCCCCchhccccHHHHHHHHHH-HhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEE--ecCChhH---hhhc
Q 036761 231 VGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVF--TTRSTEV---CGWM 302 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiv--TtR~~~v---~~~~ 302 (897)
..... ...+++.+|++|+++.. ...+.+...+.. + ..++| ||.+... ....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~-~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---G-TITLIGATTENPSFEVNPALL 140 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---C-cEEEEEeCCCChhhhccHHHh
Confidence 11111 12457889999999853 333444333322 3 44444 3444321 1112
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHh
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGR 360 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 360 (897)
.....+.+.+++.++.+.++.+.+........+-..+..+.|++.|+|.|..+..+..
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2236789999999999999998764321000022246678899999999876654433
No 45
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=1.2e-09 Score=116.49 Aligned_cols=168 Identities=24% Similarity=0.279 Sum_probs=109.8
Q ss_pred ceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 522 ARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 522 lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
....+++.|.+.++|. +..|..|..+.|. .|.+..+|.. +.++..|.+|||+.| .+..+|..++.|+ |+.|-+++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy-~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILY-HNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHH-hccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEec
Confidence 3445566666666653 4556666777666 5556666655 667777777777777 6677777776664 77777777
Q ss_pred CCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 601 TAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 601 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
|+++.+|..++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..+.... .+.++..|+ |
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~----------------lp~El~~Lp-L 213 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLED----------------LPEELCSLP-L 213 (722)
T ss_pred CccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhh----------------CCHHHhCCc-e
Confidence 7777777777777777777777776 3666666 6777777777766655432 556666554 6
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccC
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFK 715 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 715 (897)
..|+++.|++..++.-+ ..++.|+.|.|.+|+
T Consensus 214 i~lDfScNkis~iPv~f---r~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPVDF---RKMRHLQVLQLENNP 245 (722)
T ss_pred eeeecccCceeecchhh---hhhhhheeeeeccCC
Confidence 66777777776655322 234467777777665
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-09 Score=111.20 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=111.4
Q ss_pred ccccceEeecccccccccc---cccCCccceeeehhccccccccc--hhhhcCCCcccEEEccCCCCCcccCcc--ccCc
Q 036761 518 EWENARRFSLMETQIRTLS---AVPTCLHLLTLFLIFNEELEMIT--SDFFKSMPRLKVLNLSGARRMSSFPLG--ISVL 590 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~l~~l~--~~~~~~l~~L~~L~Ls~~~~~~~lp~~--i~~L 590 (897)
.++++|.+++.++.+...+ ....|++++.|+|+ .|-+..+- ..+...+++|+.|+|+.| .+...-++ -..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS-~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLS-RNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecch-hhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 3457888888888776665 35789999999999 55444332 345788999999999999 44332222 2467
Q ss_pred cCCCEeeccCCCcc--ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCcc
Q 036761 591 VSLQHLDLSGTAIR--ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGD 668 (897)
Q Consensus 591 ~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 668 (897)
.+|+.|.|+.|+++ .+-..+..+++|+.|+|..|.....-... ..-+..|+.|+++++....+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~------------- 262 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFD------------- 262 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccc-------------
Confidence 89999999999988 44445667899999999999432221111 456778999999998765431
Q ss_pred chhHHhcCCCCCCEEEEEeCCcccH
Q 036761 669 LLVEALRGLEHLEVLSLTLNNFQDL 693 (897)
Q Consensus 669 ~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (897)
.....+.++.|+.|+++.+.+.++
T Consensus 263 -~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 263 -QGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred -cccccccccchhhhhccccCcchh
Confidence 223456778888888888776654
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.76 E-value=2.5e-07 Score=104.86 Aligned_cols=243 Identities=17% Similarity=0.176 Sum_probs=137.7
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
.+++|.++.++++.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.++..+...+. .++..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~i~-~~i~~ 87 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADVIE-RVAGE 87 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHHHH-HHHHH
Confidence 5689999999999998864 1267899999999999999999999872 33 3334444433333222 22221
Q ss_pred hCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc------ccccccccCCCCCCCCcEEEEecCChh-Hh--hh
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV------AFTTVGVPIPPRDKSASKVVFTTRSTE-VC--GW 301 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~~~~l~~~~~~~s~iivTtR~~~-v~--~~ 301 (897)
..... .....++-+||+|+++... .+..+...+.. .+ ..||+|+.+.. .. ..
T Consensus 88 ~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~-~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 88 AATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AK-QPIILTANDPYDPSLREL 148 (482)
T ss_pred hhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CC-CCEEEeccCccccchhhH
Confidence 11100 0111367799999997532 13333333322 22 45666665432 11 11
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCC---ChHHHHHHHHHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKK---TPEEWRDAIKVL 378 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~---~~~~w~~~~~~l 378 (897)
......+.+.+++.++....+...+.......+ .+....|++.++|..-.+......+.... +.+....+.
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~--- 222 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLG--- 222 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhh---
Confidence 223457899999999999998887754432222 45688999999997766544333343321 222222211
Q ss_pred cccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccC
Q 036761 379 QTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVT 442 (897)
Q Consensus 379 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~ 442 (897)
. .+...+++.++..-+..=....+...+..+. ++. +.+-.|+.+.+....
T Consensus 223 -~-----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~~ 272 (482)
T PRK04195 223 -R-----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKEY 272 (482)
T ss_pred -c-----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhcccccc
Confidence 1 1112356666665554222212333222221 222 357789999987654
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.2e-07 Score=96.76 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=104.8
Q ss_pred CCCc--cchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTV--GMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~v--Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
++|+ +.+..++.+.+++.......|.|+|++|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH-----
Confidence 4455 3455777787776556678899999999999999999998763 2333455665443211 00
Q ss_pred CCCchhccccHHHHHHHHHHHhccCceEEEEecccccc---ccc-cccccCCCC-CCCCcEEEEecCChh---------H
Q 036761 233 LFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---AFT-TVGVPIPPR-DKSASKVVFTTRSTE---------V 298 (897)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~-~~~~~l~~~-~~~~s~iivTtR~~~---------v 298 (897)
..+...+.+. -+||+||++... .|. .+...+... ..+ .++|+||+... +
T Consensus 82 ---------------~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L 144 (226)
T TIGR03420 82 ---------------PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDL 144 (226)
T ss_pred ---------------HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHH
Confidence 0111122222 389999997532 222 232222211 223 57888888532 2
Q ss_pred hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHh
Q 036761 299 CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGR 360 (897)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~ 360 (897)
...+.....+++++++.++...+++..+....... -.+..+.+++.++|.|..+..+..
T Consensus 145 ~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 145 RTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 22333345789999999999999987653222112 235567888889998887765543
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.6e-09 Score=106.25 Aligned_cols=84 Identities=29% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCEeeccCCCcc--ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccch
Q 036761 593 LQHLDLSGTAIR--ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLL 670 (897)
Q Consensus 593 L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 670 (897)
|++|||++..|+ .+..-+..+.+|+.|.|.++.....+-.. +.+-.+|+.|+++.|...+ ....
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t-------------~n~~ 252 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT-------------ENAL 252 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc-------------hhHH
Confidence 455555554444 33333445555555555555433333322 4445555555555544321 1112
Q ss_pred hHHhcCCCCCCEEEEEeCCc
Q 036761 671 VEALRGLEHLEVLSLTLNNF 690 (897)
Q Consensus 671 ~~~l~~l~~L~~L~l~~~~~ 690 (897)
---+.+++.|..|++++|..
T Consensus 253 ~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHHhhhhHhhcCchHhhc
Confidence 23345555666666665554
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.66 E-value=1.5e-08 Score=113.10 Aligned_cols=177 Identities=26% Similarity=0.354 Sum_probs=90.8
Q ss_pred cCCccceeeehhccccccccchhhhcCCC-cccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCc
Q 036761 539 PTCLHLLTLFLIFNEELEMITSDFFKSMP-RLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQ 617 (897)
Q Consensus 539 ~~~~~L~~L~l~~~~~l~~l~~~~~~~l~-~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~ 617 (897)
...+.+..|.+. ++.+..+++. ...+. +|+.|++++| .+..+|..++.+++|+.|++++|+++.+|...+.+++|+
T Consensus 113 ~~~~~l~~L~l~-~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLD-NNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecC-CcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 334455555555 4455555543 23332 5555555555 555555555555555555555555555555555555555
Q ss_pred EecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHH
Q 036761 618 CLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVL 697 (897)
Q Consensus 618 ~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 697 (897)
.|++++|. +..+|.. +..+..|++|.+.++.... .+..+.++.++..+.+..|.+..+
T Consensus 190 ~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~----------------~~~~~~~~~~l~~l~l~~n~~~~~---- 247 (394)
T COG4886 190 NLDLSGNK-ISDLPPE-IELLSALEELDLSNNSIIE----------------LLSSLSNLKNLSGLELSNNKLEDL---- 247 (394)
T ss_pred heeccCCc-cccCchh-hhhhhhhhhhhhcCCccee----------------cchhhhhcccccccccCCceeeec----
Confidence 55555555 2555543 3344445555555542111 233344444444444443333221
Q ss_pred hchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCC
Q 036761 698 KSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRL 768 (897)
Q Consensus 698 ~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l 768 (897)
...+..+++|+.|++++| .+..+.. ...+.+|+.|+++++...
T Consensus 248 ------------------------~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 ------------------------PESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ------------------------cchhccccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 123455666777777766 3333322 445677777777777433
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.66 E-value=4.9e-07 Score=102.80 Aligned_cols=204 Identities=14% Similarity=0.138 Sum_probs=120.6
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccC---CCCC--CEEEEEEeCCcCCHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLG---QGDF--DFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f--~~~~wv~~~~~~~~~~~~ 224 (897)
+.+.|||+++++|...|.. ....++.|+|++|+|||+.++.|.+.... +... -.+++|.+....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 5678999999999988754 23357889999999999999999876532 1111 236778887777888999
Q ss_pred HHHHHHhCCCCchhccccHHHHHHHHHHHhc---cCceEEEEecccccc--ccccccccC--CCCCCCCcEEEE--ecCC
Q 036761 225 EIIGKKVGLFNDSWMKKNLAERAVDIYNVLK---EKKFVLLLDDVWQRV--AFTTVGVPI--PPRDKSASKVVF--TTRS 295 (897)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~--~~~~~~~~l--~~~~~~~s~iiv--TtR~ 295 (897)
..|.+++....+. ......+....+...+. +...+||||+++... .-+.+...+ +. ..+ ++|+| +|..
T Consensus 835 qvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~-~s~-SKLiLIGISNd 911 (1164)
T PTZ00112 835 QVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT-KIN-SKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh-ccC-CeEEEEEecCc
Confidence 9999988533221 22233345555555542 224589999997422 111111111 11 122 44443 4433
Q ss_pred hh--------HhhhcCCCceEEcCCCChHHHHHHHHHHhCCCc-cCCCCcHHHHHHHHHHHcCCcchHHHHHHhhh
Q 036761 296 TE--------VCGWMGAHKNFEVGCLSANDARELFRQNVGEET-LNGHPDIRELSETVTKECGSLPLALIITGRAM 362 (897)
Q Consensus 296 ~~--------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~-~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 362 (897)
.+ +...++ ...+..++++.++..+++..++.... .-.+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 912 lDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22 222222 22367799999999999999886321 11222233344444444455556665554443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=6e-07 Score=101.81 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=111.3
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 214 (897)
+++||.+..++.|.+++..+.+ ..+.++|..|+||||+|+.+.+...-.. .|..++++..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 5679999999999999987664 4668999999999999999888663111 1111222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH----hccCceEEEEeccccc--cccccccccCCCCCCCCcE
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASK 288 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ 288 (897)
+... ..+++...+... ..++.-++|||+++.. ..+..+...+...... .+
T Consensus 96 as~r-----------------------gVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~-v~ 151 (830)
T PRK07003 96 ASNR-----------------------GVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH-VK 151 (830)
T ss_pred cccc-----------------------cHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC-eE
Confidence 2111 112222111111 1245558899999753 3455555444433334 78
Q ss_pred EEEecCChhH-h-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc-hHHHHHHh
Q 036761 289 VVFTTRSTEV-C-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP-LALIITGR 360 (897)
Q Consensus 289 iivTtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 360 (897)
+|+||++..- . ........+.++.++.++..+.+.+.+..+.... -.+....|++.++|.. -|+..+-.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8877776532 1 1122346799999999999999998876543222 2456788999998865 45555433
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2.4e-08 Score=111.45 Aligned_cols=156 Identities=29% Similarity=0.417 Sum_probs=129.9
Q ss_pred ccccceEeecccccccccccccCCc--cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCE
Q 036761 518 EWENARRFSLMETQIRTLSAVPTCL--HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQH 595 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 595 (897)
....+..+++..+.+..++...... +|+.|+++ .+.+..+|.. +..+++|+.|++++| .+..+|...+.+.+|+.
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhccccccc-ccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3457899999999999998876654 89999999 8888888644 789999999999999 89999988879999999
Q ss_pred eeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhc
Q 036761 596 LDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALR 675 (897)
Q Consensus 596 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (897)
|++++|+++.+|..+..+..|++|.+++|.. ...+.. +.++.++..|.+..+.... .+..++
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~----------------~~~~~~ 252 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED----------------LPESIG 252 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee----------------ccchhc
Confidence 9999999999999888888899999999964 344443 8889999888876655321 256677
Q ss_pred CCCCCCEEEEEeCCcccHH
Q 036761 676 GLEHLEVLSLTLNNFQDLQ 694 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~ 694 (897)
.+++|+.|+++.|.+..+.
T Consensus 253 ~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 253 NLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cccccceeccccccccccc
Confidence 8888999999998877654
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.1e-06 Score=89.10 Aligned_cols=221 Identities=17% Similarity=0.230 Sum_probs=124.2
Q ss_pred CCCccchHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHH
Q 036761 155 EPTVGMQSQL---DKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 230 (897)
+++||.+.-+ .-|.+.+..+.+.-..+||++|+||||||+.++... ...|. .++... +++++...+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~--~~~f~-----~~sAv~~gvkdlr~i~--- 93 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT--NAAFE-----ALSAVTSGVKDLREII--- 93 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh--CCceE-----EeccccccHHHHHHHH---
Confidence 4566665544 234455666788888899999999999999999876 44443 222222 222222211
Q ss_pred hCCCCchhccccHHHHHHHH-HHHhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEE--ecCChhH---hhhc
Q 036761 231 VGLFNDSWMKKNLAERAVDI-YNVLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVF--TTRSTEV---CGWM 302 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiv--TtR~~~v---~~~~ 302 (897)
+.- .....+++.+|.+|.|.. ..+.+.+ +|.-..| .-|+| ||.++.. ....
T Consensus 94 -----------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G-~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 94 -----------------EEARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENG-TIILIGATTENPSFELNPALL 152 (436)
T ss_pred -----------------HHHHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCC-eEEEEeccCCCCCeeecHHHh
Confidence 111 223348999999999953 4444444 3333444 55554 6666543 2223
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCcc--C-CCCcH-HHHHHHHHHHcCCcchHHHHH---HhhhhcCC---ChHHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETL--N-GHPDI-RELSETVTKECGSLPLALIIT---GRAMACKK---TPEEWR 372 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~--~-~~~~~-~~~~~~i~~~~~glPlai~~~---~~~l~~~~---~~~~w~ 372 (897)
....++.+++|+.++-..++.+.+..... . ....+ ++....+++.++|---++-.. +..+.... ..+..+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 44578999999999999999985432210 1 11112 446778888888875543222 22222211 233333
Q ss_pred HHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCc
Q 036761 373 DAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDD 406 (897)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~ 406 (897)
+.+..-.....+..+..-++.+++.-|...-.++
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 3332211111111122236778888888887663
No 55
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=4.3e-09 Score=103.21 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=99.3
Q ss_pred ccccccceEeecccccccccccc-cCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 516 VREWENARRFSLMETQIRTLSAV-PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
...|+.+..+++++|.|+.+... .-.|.+|.|+++ .|.+..+.. +..+++|..||||+| .++++-..-.+|-|.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 34577888899999988887643 557888999998 667776665 677888899999988 6776655556677888
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCC
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDW 652 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~ 652 (897)
+|.|++|.|..+ +++++|.+|..||+++|++ ..+.. .-|++|+.|++|.+.+|...
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcc
Confidence 888988888877 5788888889999988875 43321 22788888888888776643
No 56
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1e-06 Score=94.31 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=115.3
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhccc----CCCCCCEEEEEE-eCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFL----GQGDFDFLIWVV-VSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~~~wv~-~~~~~~~~~~~~~i~ 228 (897)
.+++|.+..++.+.+.+..+.. ....++|+.|+||||+|+.+++..- ...|+|...|.. -+....+.++. ++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHH
Confidence 4678999999999999977655 5668999999999999999988542 245667666654 23333333322 233
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccc--cccccccccccCCCCCCCCcEEEEecCChhHh--hhcCC
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVW--QRVAFTTVGVPIPPRDKSASKVVFTTRSTEVC--GWMGA 304 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~--~~~~~ 304 (897)
+.+.... ..+++-++|+|+++ +...+..+...+.....+ +.+|++|.+.+.. .....
T Consensus 83 ~~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~-t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 83 EEVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKG-VFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCC-eEEEEEeCChHhCcHHHHhh
Confidence 3322111 12345566667664 556677777667665555 8888888765431 11223
Q ss_pred CceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 305 HKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 305 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
...+.+.++++++....+.+...... .+.+..++..++|.|.-+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 46789999999999888876643211 23367888999998875543
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.62 E-value=4.7e-06 Score=96.51 Aligned_cols=203 Identities=13% Similarity=0.029 Sum_probs=117.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC---CEEEEEEeCC---cCCHHHHHHHH-
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF---DFLIWVVVSK---DLQIEKIQEII- 227 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~~~---~~~~~~~~~~i- 227 (897)
++++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ll 233 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLL 233 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhc
Confidence 5689999999998888766667789999999999999999998766432222 1223444322 11222221111
Q ss_pred --------------HHHhCCCCch---------------hccccHHHHHHHHHHHhccCceEEEEecccc--cccccccc
Q 036761 228 --------------GKKVGLFNDS---------------WMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ--RVAFTTVG 276 (897)
Q Consensus 228 --------------~~~l~~~~~~---------------~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~ 276 (897)
+...+..... ....-....+..+.+.++++++.++-|+.|. ...|+.+.
T Consensus 234 g~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik 313 (615)
T TIGR02903 234 GSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIK 313 (615)
T ss_pred CCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhh
Confidence 1111111000 0011123356778888888898888777664 34577766
Q ss_pred ccCCCCCCCCcEEEE--ecCChhH-hhh-cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 277 VPIPPRDKSASKVVF--TTRSTEV-CGW-MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 277 ~~l~~~~~~~s~iiv--TtR~~~v-~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
..+...... ..|++ ||++... ... ......+.+.+++.+|.+.++.+.+.......+ .++.+.|.+.+..-+
T Consensus 314 ~~~~~~~~~-~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gR 389 (615)
T TIGR02903 314 KLFEEGAPA-DFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIEGR 389 (615)
T ss_pred hhcccCccc-eEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHH
Confidence 555554444 44444 5665432 111 112346789999999999999998754321111 344555555555445
Q ss_pred hHHHHHHhh
Q 036761 353 LALIITGRA 361 (897)
Q Consensus 353 lai~~~~~~ 361 (897)
-|+..++..
T Consensus 390 raln~L~~~ 398 (615)
T TIGR02903 390 KAVNILADV 398 (615)
T ss_pred HHHHHHHHH
Confidence 565555443
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.8e-09 Score=105.85 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=52.2
Q ss_pred CcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccH
Q 036761 614 ENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDL 693 (897)
Q Consensus 614 ~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (897)
+.||+|||+...+...--.++++.+++|+.|.+.+.... ..+...+..-.+|+.|+++.++.-..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld---------------D~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD---------------DPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC---------------cHHHHHHhccccceeeccccccccch
Confidence 458888888876544444455777888888888775532 22556677777888888877654332
Q ss_pred HHHHhchhccccceeEEEeccC
Q 036761 694 QCVLKSKELRRCTQALYLYSFK 715 (897)
Q Consensus 694 ~~~~~~~~~~~~L~~L~L~~~~ 715 (897)
.........++.|..|+|++|.
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhh
Confidence 2222222333445555555554
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.59 E-value=6.6e-07 Score=97.57 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=109.0
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-CEEEEEEeCCcCCHHHHHHHHH-----
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF-DFLIWVVVSKDLQIEKIQEIIG----- 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~----- 228 (897)
++++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.... ..+ ...+.++++...+. ....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQ--GKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhc--chhhhhcCcch
Confidence 678999999999999988777678899999999999999999887632 222 22344444321100 000000
Q ss_pred -HHhCCCCchhccccHHHHHHHHHHHh-----ccCceEEEEecccccc--ccccccccCCCCCCCCcEEEEecCChh-Hh
Q 036761 229 -KKVGLFNDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQRV--AFTTVGVPIPPRDKSASKVVFTTRSTE-VC 299 (897)
Q Consensus 229 -~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iivTtR~~~-v~ 299 (897)
..++... .......+.....+.... .+.+-+||+||+.... ....+...+...... +++|+||.+.. +.
T Consensus 92 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~-~~~Il~~~~~~~~~ 169 (337)
T PRK12402 92 AHFLGTDK-RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRT-CRFIIATRQPSKLI 169 (337)
T ss_pred hhhhhhhh-hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCC-CeEEEEeCChhhCc
Confidence 0000000 000001111111111111 1344589999996432 222333222222233 67887775432 21
Q ss_pred h-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 300 G-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 300 ~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
. .......+++.+++.++...++.+.+....... -.+..+.+++.++|.+-.+..
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 1 112235688999999999999988765433222 245688889999887655443
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=7.1e-07 Score=103.29 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=110.1
Q ss_pred CCCccchHHHHHHHHHhccCCceE-EEEEcCCCCcHHHHHHHHHhcccCCCC-------------------CCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGI-VGLYGMGGVGKTTLLTHLHNKFLGQGD-------------------FDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 214 (897)
.++||.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++....... |.-++++..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 568999999999999998776654 589999999999999999987632111 111122211
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHH-HHhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEE
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIY-NVLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVF 291 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiv 291 (897)
+....+.. ..++...+. .-..+++-++|||++.. ...+..+...+-..... .++|+
T Consensus 96 as~~kVDd--------------------IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~-vrFIL 154 (944)
T PRK14949 96 ASRTKVDD--------------------TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH-VKFLL 154 (944)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC-eEEEE
Confidence 11111111 111111111 11246677999999964 34455554444433333 66666
Q ss_pred ecCC-hhHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 292 TTRS-TEVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 292 TtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+|.+ ..+. ........|++++++.++....+.+.+...... .-.+....|++.++|.|--+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5554 3332 112234679999999999999998877543211 22456788999999988644433
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.55 E-value=5.1e-08 Score=98.50 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEeCCcccHHH--HHhchhccccceeEEEeccCCCcc---cccccccccCCCCceeeeecCCccEE--Eec
Q 036761 676 GLEHLEVLSLTLNNFQDLQC--VLKSKELRRCTQALYLYSFKRSEP---LDVSALAGLKHLNRLWIHECEELEEL--EMA 748 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~l~~l--~~~ 748 (897)
.-++|+.+....|.+.+... +.......+.|+.+.+..+..... .-...+..+++|+.|++.+|.....- ...
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34556666666665543221 112222233455555554432111 11124556677777777766322110 001
Q ss_pred ccCcCCCCccEEEEeCCCCCCCCcc-------cccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeec
Q 036761 749 RQPFDFRSLKKIQIYGCHRLKDLTF-------LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRL 821 (897)
Q Consensus 749 ~~~~~l~~L~~L~L~~c~~l~~l~~-------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l 821 (897)
.....+++|+.|++++| .+++=.. -...|+|+.|.+.+|..-.+-.. .+.......|.|+.|+|
T Consensus 235 kaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~--------~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL--------ALAACMAEKPDLEKLNL 305 (382)
T ss_pred HHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH--------HHHHHHhcchhhHHhcC
Confidence 11345667777777777 4443211 12367777777777543222111 00112233566666666
Q ss_pred ccc
Q 036761 822 GGL 824 (897)
Q Consensus 822 ~~~ 824 (897)
++|
T Consensus 306 ngN 308 (382)
T KOG1909|consen 306 NGN 308 (382)
T ss_pred Ccc
Confidence 664
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.5e-06 Score=94.62 Aligned_cols=189 Identities=16% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
++++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+++......... ..+...-.....+......
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHhcCCCC
Confidence 6789999999999998877654 4678999999999999999988763111100 0000000011111110000
Q ss_pred CCc---hhccccHHHHHHHHHHHh-----ccCceEEEEecccccc--ccccccccCCCCCCCCcEEEEecCChh-Hhhh-
Q 036761 234 FND---SWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQRV--AFTTVGVPIPPRDKSASKVVFTTRSTE-VCGW- 301 (897)
Q Consensus 234 ~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iivTtR~~~-v~~~- 301 (897)
... .......++ ...+.+.+ .+++-++|+|++.... .+..+...+...... .++|++|.+.. +...
T Consensus 89 d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~-~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 89 DLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH-IKFILATTDVEKIPKTI 166 (363)
T ss_pred ceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEEEcCChHhhhHHH
Confidence 000 000011111 11222221 2345699999997533 355554444443334 67777765532 3211
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
.+....+++.+++.++..+.+...+......- -.+.+..|++.++|.|-.+
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 22246789999999999998888664332111 2355788999999988643
No 63
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.6e-06 Score=89.08 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=127.3
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
+.+.+||.+++++...|.. +...-+.|+|..|+|||+.++.+.+.......=..+++|++-...+..+++..|+.+
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 4588999999999987753 333449999999999999999999988542221228899999999999999999999
Q ss_pred hCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccccc--ccccccCCCCCCCCcEE--EEecCChhH------
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRVAF--TTVGVPIPPRDKSASKV--VFTTRSTEV------ 298 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~~--~~~~~~l~~~~~~~s~i--ivTtR~~~v------ 298 (897)
++.... ......+....+.+.+. ++.+++|||+++....- +-+...+.......++| |..+-+...
T Consensus 97 ~~~~p~--~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 97 LGKVPL--TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred cCCCCC--CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 963221 34455666677777775 47899999999753221 11111111111112443 444444332
Q ss_pred --hhhcCCCceEEcCCCChHHHHHHHHHHhC---CCccCCCCcHHHHHHHHHHHcC-CcchHHHHH
Q 036761 299 --CGWMGAHKNFEVGCLSANDARELFRQNVG---EETLNGHPDIRELSETVTKECG-SLPLALIIT 358 (897)
Q Consensus 299 --~~~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~~~-glPlai~~~ 358 (897)
.+.++... +..++.+.+|-...+..++. ... ..++..-++...++..-+ ---.|+..+
T Consensus 175 rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 175 RVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 23333333 88999999999999998873 222 223333333444444444 444555443
No 64
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=2e-07 Score=85.22 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
.+++.|.|+.|+|||||+++++++.. ....+++++..+....... ..+ ....+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhhc
Confidence 46899999999999999999998873 3456777766553221100 000 2233334444
Q ss_pred cCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhh------cCCCceEEcCCCChHHH
Q 036761 256 EKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW------MGAHKNFEVGCLSANDA 318 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 318 (897)
.++.+++||++....+|......+.+.... .+|++|+.+...... .+....+++.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~-~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPN-IKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccC-ceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 477889999998888887776666554444 799999998766422 12234689999998773
No 65
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.51 E-value=1.8e-06 Score=93.36 Aligned_cols=180 Identities=15% Similarity=0.140 Sum_probs=105.6
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-EEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD-FLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
++++|+++.++.+.+++..+..+.+.|+|+.|+||||+|+.+++...... +. ..+-+..+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHHHHHHHHHHhc
Confidence 56899999999999999877777789999999999999999998763222 21 11112222222211111111110000
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hhh-hcCCCceEE
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VCG-WMGAHKNFE 309 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~~-~~~~~~~~~ 309 (897)
. ......+-++++|+++.. .....+...+...... +++|+++.... +.. .......++
T Consensus 96 -~----------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~-~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 96 -A----------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQN-TRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred -C----------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCC-CeEEEEeCCccccchhHHHHhheee
Confidence 0 000123568999998643 2233333333332333 67777764422 111 112234689
Q ss_pred cCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 310 VGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 310 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+.+++.++....+...+......- -.+....+++.++|.+--+.
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 999999999999988775433221 24568888999999876543
No 66
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=1.4e-06 Score=97.93 Aligned_cols=191 Identities=14% Similarity=0.106 Sum_probs=108.9
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.++||.+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++...-.. ++.. ..++.-...+.+...-..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVNEGRFI 87 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHhcCCCC
Confidence 5689999999999999987654 5779999999999999999988763111 1000 000111111111100000
Q ss_pred CC---chhccccHHHHHHHHHH----HhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hh-hhc
Q 036761 234 FN---DSWMKKNLAERAVDIYN----VLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWM 302 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~ 302 (897)
.- +.......++....+.. -..+++-++|+|++... .....+...+...... .++|++|.+.. +. ...
T Consensus 88 DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~-v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 88 DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH-VKFLFATTDPQKLPITVI 166 (702)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC-cEEEEEECChHhhhHHHH
Confidence 00 00001112221111111 12356678999999743 3444454444443334 67777776532 21 112
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
.....+++++++.++....+.+.+....... -.+....|++.++|.+-.+.
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 3346799999999999999988775443222 24557889999999775443
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.50 E-value=8.9e-07 Score=85.76 Aligned_cols=173 Identities=15% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCCCCccchHHHHHHHHHhc-----cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHH
Q 036761 153 PIEPTVGMQSQLDKVWSCLV-----EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 153 ~~~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (897)
..++|||.++-++.+.-++. .+...-+.+||++|+||||||.-+++.. ...|. +.+...-....++. .+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg~~i~k~~dl~-~i 95 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSGPAIEKAGDLA-AI 95 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEECCC--SCHHHH-HH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccchhhhhHHHHH-HH
Confidence 34789999998888754443 2457789999999999999999999988 33332 22221111111111 11
Q ss_pred HHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cc-------ccc---------------ccccCCCCC
Q 036761 228 GKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VA-------FTT---------------VGVPIPPRD 283 (897)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~-------~~~---------------~~~~l~~~~ 283 (897)
+.. ++ ++-+|.+|++..- .. .+. +...+|.
T Consensus 96 l~~-----------------------l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~-- 149 (233)
T PF05496_consen 96 LTN-----------------------LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP-- 149 (233)
T ss_dssp HHT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----
T ss_pred HHh-----------------------cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC--
Confidence 111 11 2335555666421 10 011 1111111
Q ss_pred CCCcEEEEecCChhHhhhcCCC--ceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhh
Q 036761 284 KSASKVVFTTRSTEVCGWMGAH--KNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRA 361 (897)
Q Consensus 284 ~~~s~iivTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 361 (897)
- +-|=.|||...+..-+... -..+++..+.+|-..+..+.+..-.. +--++.+.+|++++.|-|--+.-+-+.
T Consensus 150 -F-TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 150 -F-TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred -c-eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 1 4566788876554333332 23589999999999999887754321 223567999999999999766554444
Q ss_pred h
Q 036761 362 M 362 (897)
Q Consensus 362 l 362 (897)
.
T Consensus 225 v 225 (233)
T PF05496_consen 225 V 225 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.9e-06 Score=96.90 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=109.1
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
++++|.+..++.|..++..+... .+.++|++|+||||+|+.+++.....+.+...+|.+.+... +..-...-...++.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~el~~ 92 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVLEIDA 92 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceEEecc
Confidence 56799999999999998876654 56999999999999999998876422222222222211100 00000000000000
Q ss_pred CCchhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCC-hhHhhh-cCC
Q 036761 234 FNDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRS-TEVCGW-MGA 304 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~~-~~~ 304 (897)
. .....+.. ..+.+.+ .+++-++|+|+++.. ..+..+...+...... +.+|++|.. ..+... ...
T Consensus 93 ~----~~~~vd~i-R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~-t~~Il~t~~~~kl~~~I~SR 166 (504)
T PRK14963 93 A----SNNSVEDV-RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEH-VIFILATTEPEKMPPTILSR 166 (504)
T ss_pred c----ccCCHHHH-HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCC-EEEEEEcCChhhCChHHhcc
Confidence 0 01111111 1122222 345668999999743 3455555444443333 555555543 333221 223
Q ss_pred CceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 305 HKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 305 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
...+++.+++.++....+.+.+....... -.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 45799999999999999998875433221 2456788999999988544
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=9.7e-07 Score=83.30 Aligned_cols=123 Identities=22% Similarity=0.202 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch
Q 036761 158 VGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS 237 (897)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 237 (897)
+|++..++.+...+.....+.+.|+|++|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 47889999999988776678899999999999999999999873 222456666655433222211111000
Q ss_pred hccccHHHHHHHHHHHhccCceEEEEeccccc-----cccccccccCCCC---CCCCcEEEEecCChh
Q 036761 238 WMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR-----VAFTTVGVPIPPR---DKSASKVVFTTRSTE 297 (897)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----~~~~~~~~~l~~~---~~~~s~iivTtR~~~ 297 (897)
............++.++|+||++.. ..+......+... ..+ ..||+||....
T Consensus 72 -------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~ii~~~~~~~ 131 (151)
T cd00009 72 -------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDREN-VRVIGATNRPL 131 (151)
T ss_pred -------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCC-eEEEEecCccc
Confidence 0011112223456789999999852 1222222222111 233 78888888653
No 70
>PTZ00202 tuzin; Provisional
Probab=98.48 E-value=9.2e-06 Score=85.95 Aligned_cols=166 Identities=17% Similarity=0.073 Sum_probs=100.4
Q ss_pred cCCCCCCccchHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHH
Q 036761 151 ERPIEPTVGMQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 151 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (897)
|.+...|+||+.+...|...|.+ +..+++.|+|++|+|||||++.+..... ....+++.. +..++++.+
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHH
Confidence 34457899999999999998864 2456999999999999999999997652 112222222 679999999
Q ss_pred HHHhCCCCchhccccHHHHHHHHHHHh-c-cCceEEEEecccccccccccc---ccCCCCCCCCcEEEEecCChhHhh--
Q 036761 228 GKKVGLFNDSWMKKNLAERAVDIYNVL-K-EKKFVLLLDDVWQRVAFTTVG---VPIPPRDKSASKVVFTTRSTEVCG-- 300 (897)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~s~iivTtR~~~v~~-- 300 (897)
+.+|+.+.......-...+.+.+.+.- . +++.+||+-== +-.++..+. ..+.....- |.|++----+...-
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lr-eg~~l~rvyne~v~la~drr~-ch~v~evpleslt~~~ 407 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLR-EGSSLQRVYNEVVALACDRRL-CHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEec-CCCcHHHHHHHHHHHHccchh-heeeeeehHhhcchhc
Confidence 999998543211222233334433322 2 56666666321 111111110 112222222 67776544433311
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 301 -WMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
....-..|.+++++.++|.++..+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 11223468899999999998887764
No 71
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.48 E-value=4.2e-07 Score=92.16 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=64.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc--CCHHHHHHHH-----HHHhCCCCchhccccHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD--LQIEKIQEII-----GKKVGLFNDSWMKKNLAER 246 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~~~~~~~~~ 246 (897)
.....++|+|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+ +.+++.+... ........
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHH
Confidence 456789999999999999999999988644 8999999997776 7899999998 3333321110 00111112
Q ss_pred HHHHHHH-hccCceEEEEecccc
Q 036761 247 AVDIYNV-LKEKKFVLLLDDVWQ 268 (897)
Q Consensus 247 ~~~l~~~-l~~~~~LlVlDdv~~ 268 (897)
......+ -.+++.++++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 2222222 347899999999953
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.48 E-value=1.2e-06 Score=88.97 Aligned_cols=168 Identities=12% Similarity=0.063 Sum_probs=97.5
Q ss_pred CCCccch-HHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQ-SQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~-~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+.||+.. ..+..+...........+.|+|..|+|||+|++.+++.... ....+.|++..+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~--~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ--AGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEeHHH------hhhhHH-----
Confidence 4565443 34444444433334457999999999999999999887632 233555665322 111110
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEecccccc---ccccc-cccCCCC-CCCCcEEEEecCCh---------hHh
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---AFTTV-GVPIPPR-DKSASKVVFTTRST---------EVC 299 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~-~~~l~~~-~~~~s~iivTtR~~---------~v~ 299 (897)
...+.+ .+.-+||+||+.... .|... ...+... ..+ ..||+|++.. ++.
T Consensus 86 ---------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 ---------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHH
Confidence 011112 133589999996432 23221 1111111 123 5799999863 223
Q ss_pred hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 300 GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 300 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
+++.....+++++++.++-.+++.+++.......+ ++...-|++.++|-.-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 34444567899999999999999987743322222 456778888887665544
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=2.6e-06 Score=94.91 Aligned_cols=185 Identities=19% Similarity=0.184 Sum_probs=107.5
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCC-------------------CCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGD-------------------FDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 214 (897)
+++||.+..++.|...+..+.. +.+.++|++|+||||+|+.+++....... +..++.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5789999998888888877766 46899999999999999999887532110 001222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEe
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivT 292 (897)
+...+...+. .+.+.... .-..+++-++|+|++... ...+.+...+...... ..+|++
T Consensus 94 a~~~gid~iR-~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~-vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEIR-KIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSH-VVFVLA 153 (472)
T ss_pred cccCCHHHHH-HHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCc-EEEEEE
Confidence 2221221111 11111100 012345679999999642 3344444444332223 555544
Q ss_pred cCC-hhHhhh-cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC-cchHHHHHHhhh
Q 036761 293 TRS-TEVCGW-MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS-LPLALIITGRAM 362 (897)
Q Consensus 293 tR~-~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~~l 362 (897)
|.+ ..+... ......+++.+++.++....+.+.+......-+ .+....|++.++| .+.|+..+-.+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444 333221 223467899999999999999887743321111 3557788887755 466766665543
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.47 E-value=1.5e-06 Score=93.20 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=105.2
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-EEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD-FLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|.++.++.|.+++..+..+.+.++|++|+||||+|+.+++.... ..|. .++-++.++..+...+ +.+++.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~~v-r~~i~~~~~ 90 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGIDVV-RNKIKMFAQ 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHHHH-HHHHHHHHh
Confidence 567999999999988887777777889999999999999999987632 1222 2222233332222221 111111100
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCCh-hHhh-hcCCCceEE
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRST-EVCG-WMGAHKNFE 309 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~-~v~~-~~~~~~~~~ 309 (897)
... ..-.++.-++++|+++.. .....+...+...... +++|+++... .+.. .......++
T Consensus 91 ~~~---------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~-t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 91 KKV---------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNT-TRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred ccc---------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCC-ceEEEEeCCccccchhHHHhhhccc
Confidence 000 000234668999999753 2223332222222233 6777776543 2211 111235689
Q ss_pred cCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 310 VGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 310 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
+++++.++....+...+......-+ .+....|++.++|..-.
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHH
Confidence 9999999999999888754432222 35578889999886643
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1.4e-06 Score=97.48 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=108.9
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH---
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK--- 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--- 230 (897)
+++||.+..++.|.+.+..+++. .+.++|+.|+||||+|+.+.+...-... +..--+. +..+..-...+.|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p-~~~~g~~-~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGEGGIT-AQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc-cccccCC-CCCCcccHHHHHHHcCCCC
Confidence 56799999999999999877654 5689999999999999999876632100 0000000 0000001111111100
Q ss_pred --hCCCCchhccccHHHHHHHHHHH----hccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC-hhHh-h
Q 036761 231 --VGLFNDSWMKKNLAERAVDIYNV----LKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS-TEVC-G 300 (897)
Q Consensus 231 --l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~-~ 300 (897)
+.+... .....+++.+.+... ..++.-++|||+++. ...+..+...+-..... .++|++|.+ ..+. .
T Consensus 94 DviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~-v~FILaTtep~kLlpT 170 (700)
T PRK12323 94 DYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH-VKFILATTDPQKIPVT 170 (700)
T ss_pred cceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCC-ceEEEEeCChHhhhhH
Confidence 000000 011122222221111 235566999999974 34455555544443333 565555544 4442 1
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 301 WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.......+.++.++.++..+.+.+.+....... -.+..+.|++.++|.|.....+
T Consensus 171 IrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 171 VLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 122235689999999999999988775433221 1345688999999998654433
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.2e-06 Score=93.70 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=109.0
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+..+..|..++..+..+ .+.++|+.|+||||+|+.+++...-...... ..+.....- ..+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC----~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSC----LEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHH----HHHHccCCc
Confidence 56799999999999999877754 5899999999999999999987632111000 001111111 111111110
Q ss_pred CC---chhccccHH---HHHHHHHH-HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC-hhHh-hhc
Q 036761 234 FN---DSWMKKNLA---ERAVDIYN-VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS-TEVC-GWM 302 (897)
Q Consensus 234 ~~---~~~~~~~~~---~~~~~l~~-~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~-~~~ 302 (897)
.. +.......+ ++...+.. -..++.-++|+|++.. ...+..+...+-..... ..+|++|.. ..+. ...
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~-viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAH-IVFILATTEFHKIPETIL 169 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCc-eEEEeecCChhhccHHHH
Confidence 00 000011111 22222221 1235667999999974 34566665544433333 565555544 3332 222
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
.....|.+.+++.++..+.+.+.+......- -.+....|++.++|.+--
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHH
Confidence 2345699999999999999988775433211 245678899999998754
No 77
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=7.4e-08 Score=97.35 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=55.7
Q ss_pred HhcCCCCCCEEEEEeCCccc--HHHHHhchhccccceeEEEeccCCCccccc---ccccccCCCCceeeeecCCccEEEe
Q 036761 673 ALRGLEHLEVLSLTLNNFQD--LQCVLKSKELRRCTQALYLYSFKRSEPLDV---SALAGLKHLNRLWIHECEELEELEM 747 (897)
Q Consensus 673 ~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~l~~l~~ 747 (897)
.++..+.|+.+.+..|.+.. ...+......+++|+.|+|.+|........ ..++.+++|+.|++++|. ++.-..
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga 258 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGA 258 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccH
Confidence 34444455555555444321 112222333344555555554432111110 135556677777777773 221000
Q ss_pred ----cccCcCCCCccEEEEeCCCCCCCC------cccccCCCccEEEEecCch
Q 036761 748 ----ARQPFDFRSLKKIQIYGCHRLKDL------TFLLFAPNLKSIEVSSCFA 790 (897)
Q Consensus 748 ----~~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~ 790 (897)
.......|+|+.|.+.+|. ++.= .+....|.|+.|+|++|..
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0002346778888888773 3321 1233467888888888643
No 78
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=6.7e-06 Score=88.69 Aligned_cols=195 Identities=8% Similarity=-0.031 Sum_probs=110.7
Q ss_pred CCCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEE---EEeCCcCCHHHHHHHHHH
Q 036761 154 IEPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIW---VVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w---v~~~~~~~~~~~~~~i~~ 229 (897)
..+++|.++.++.+.+.+..+.++ .+.++|+.|+||+|+|..+++..--......... .............+.+..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 367899999999999999887655 6889999999999999988776532111000000 000000000011111111
Q ss_pred HhCCCC---------chh----ccccHHHHHHHHHHHhc-----cCceEEEEecccc--ccccccccccCCCCCCCCcEE
Q 036761 230 KVGLFN---------DSW----MKKNLAERAVDIYNVLK-----EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKV 289 (897)
Q Consensus 230 ~l~~~~---------~~~----~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~i 289 (897)
. ..+. +.. .....++ +..+.+++. +.+-++|+||++. ......+...+.....+ +.+
T Consensus 98 ~-~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~-~~~ 174 (365)
T PRK07471 98 G-AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR-SLF 174 (365)
T ss_pred c-CCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC-eEE
Confidence 0 0000 000 0112223 333444443 4567999999964 33444444444433334 667
Q ss_pred EEecCChh-Hh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 290 VFTTRSTE-VC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 290 ivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
|++|.+.. +. ........+.+.+++.++..+++.+...... ......+++.++|.|..+..+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 77776653 22 1123346799999999999999988653211 122267899999999876554
No 79
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.44 E-value=3.7e-07 Score=89.99 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=34.0
Q ss_pred CCccchHHHHHHHHHhc---cCCceEEEEEcCCCCcHHHHHHHHHhcccCC
Q 036761 156 PTVGMQSQLDKVWSCLV---EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ 203 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 203 (897)
.||||+++++++...+. ....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999983 2467899999999999999999999888544
No 80
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5e-06 Score=92.98 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=108.3
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCE-EEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDF-LIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
.++||.+..+..|...+..+.. +.+.++|+.|+||||+|+.+++...-...... .-+..+.. -.....+.....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~----C~~C~~i~~~~h 96 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ----CTNCISFNNHNH 96 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC----ChHHHHHhcCCC
Confidence 5679999999999887776654 57889999999999999999887632111000 00000000 000111110000
Q ss_pred CCC---chhccccHHHHHHHHHH----HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEE-ecCChhHhhh-
Q 036761 233 LFN---DSWMKKNLAERAVDIYN----VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVF-TTRSTEVCGW- 301 (897)
Q Consensus 233 ~~~---~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiv-TtR~~~v~~~- 301 (897)
... +.......+++...+.. -+.+++-++|+|+++. ...+..+...+...... +.+|+ ||+...+...
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~-~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH-IIFIFATTEVQKIPATI 175 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC-EEEEEEeCChHHhhHHH
Confidence 000 00001112222221111 1235677899999975 34466665444443333 56654 5554454332
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
......+++++++.++....+...+......- -.+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 22345789999999999999998885443111 1345677999999877443
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.42 E-value=1.7e-06 Score=87.99 Aligned_cols=172 Identities=12% Similarity=0.116 Sum_probs=100.9
Q ss_pred CCCc-cc-hHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTV-GM-QSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~v-Gr-~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
++|+ |. ...+..+.++......+.+.|+|+.|+|||+|++.+++.... ....+.++.+.....
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~------------- 86 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAW------------- 86 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhh-------------
Confidence 3443 63 334445555544455578999999999999999999987632 234556665532100
Q ss_pred CCCchhccccHHHHHHHHHHHhccCceEEEEeccccc---ccccccc-ccCCCC-CCCCcEEEEecCCh---------hH
Q 036761 233 LFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR---VAFTTVG-VPIPPR-DKSASKVVFTTRST---------EV 298 (897)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~-~~l~~~-~~~~s~iivTtR~~---------~v 298 (897)
...+. .+.+.. --+|++||+... ..|+... ..+... ..|..++|+||+.. +.
T Consensus 87 ---------~~~~~----~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ---------FVPEV----LEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ---------hhHHH----HHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 00111 111111 247899999642 2333221 111111 12224799999864 33
Q ss_pred hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 299 CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 299 ~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+++.....++++++++++-.+++.+++.......+ +++..-|++.+.|..-++..+
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 455566678999999999999999886643322222 456788888888766554433
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=7.3e-06 Score=89.14 Aligned_cols=186 Identities=8% Similarity=-0.010 Sum_probs=102.4
Q ss_pred CCCccchHHHHHHHHHhccCC----------ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEP----------VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
++++|.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++..--...- +..+ +.-...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~C----g~C~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGC----GECRAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCC----CCCHHH
Confidence 467899999999999987653 4568899999999999999987754211100 0000 000000
Q ss_pred HHHHHHhCCC----CchhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec
Q 036761 225 EIIGKKVGLF----NDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT 293 (897)
Q Consensus 225 ~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt 293 (897)
+.+...-... .+.......+++ ..+.+.+ .+++-++|+|+++.. .....+...+.....+ ..+|++|
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~-~~fIL~a 154 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPR-TVWLLCA 154 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC-CeEEEEE
Confidence 0110000000 000000111221 1222222 244558888999753 3333343333333334 5566655
Q ss_pred CCh-hHhhh-cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 294 RST-EVCGW-MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 294 R~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+. .+... ......+.+++++.++..+.+.+..+.. .+.+..+++.++|.|.....+
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~~--------~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGVD--------PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCCC--------HHHHHHHHHHcCCCHHHHHHH
Confidence 554 33221 2234679999999999998887543211 245778999999999765443
No 83
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4e-06 Score=94.31 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=108.8
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 214 (897)
.++||.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++...-.. .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5679999999999999977655 4578999999999999999987552110 1212222222
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH-HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEE
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVF 291 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiv 291 (897)
.....+.+ ..++...+.. -..+++-++|+|++.. ...+..+...+...... +.+|+
T Consensus 96 as~~gvd~--------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~-v~fIL 154 (546)
T PRK14957 96 ASRTGVEE--------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY-VKFIL 154 (546)
T ss_pred ccccCHHH--------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC-ceEEE
Confidence 11111111 1122222211 1235667999999964 33455555445443334 65554
Q ss_pred -ecCChhHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHHHh
Q 036761 292 -TTRSTEVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIITGR 360 (897)
Q Consensus 292 -TtR~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~ 360 (897)
||....+. ........+++++++.++....+.+.+...... --.+....|++.++|.+- |+..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 54433332 222334679999999999988888766433211 124556789999999664 4444433
No 84
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.9e-07 Score=71.48 Aligned_cols=56 Identities=32% Similarity=0.567 Sum_probs=23.6
Q ss_pred cccEEEccCCCCCcccCc-cccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCC
Q 036761 568 RLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEET 624 (897)
Q Consensus 568 ~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~ 624 (897)
+|++|++++| .++.+|. .+.++++|++|++++|.++.+|. .|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444 3333332 33444444444444444444432 2344444444444444
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=4.5e-06 Score=93.91 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=106.3
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|++..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++...-.. |... ..++.-...+.+......
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINTNQSV 88 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHcCCCC
Confidence 5689999999999999877554 4688999999999999999988763111 1110 011111111111111000
Q ss_pred CCchh---ccccHHHHHHHHHHH-----hccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecC-ChhHh-hh
Q 036761 234 FNDSW---MKKNLAERAVDIYNV-----LKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTR-STEVC-GW 301 (897)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR-~~~v~-~~ 301 (897)
..-.. .....+++. .+.+. ..+++-++|+|+++. ...+..+...+...... +.+|++|. ...+. ..
T Consensus 89 DiieIdaas~igVd~IR-eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 89 DIVELDAASNNGVDEIR-NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEFQKIPLTI 166 (605)
T ss_pred ceEEeccccccCHHHHH-HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCChHhhhHHH
Confidence 00000 001111111 11111 123344699999964 33445554444333333 55655554 33332 12
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIITG 359 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~ 359 (897)
......+++.+++.++....+...+......-+ .+.+..+++.++|.+- |+..+-
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 233457899999999999988887643321111 3457889999999664 444443
No 86
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=3e-07 Score=71.39 Aligned_cols=60 Identities=37% Similarity=0.509 Sum_probs=51.0
Q ss_pred ccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCCc
Q 036761 542 LHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTAI 603 (897)
Q Consensus 542 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i 603 (897)
|+|++|+++ ++.+..+|.+.|.++++|++|++++| .++.+| ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEET-SSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578889999 66888999888999999999999988 667665 4688999999999999875
No 87
>PLN03150 hypothetical protein; Provisional
Probab=98.37 E-value=7.3e-07 Score=104.20 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=67.3
Q ss_pred ceeeehhcccccc-ccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCcc-ccChhhhcCCcCcEecC
Q 036761 544 LLTLFLIFNEELE-MITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIR-ELPKELNALENLQCLNL 621 (897)
Q Consensus 544 L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L 621 (897)
++.|+|+ ++.+. .+|.. +..+++|++|+|++|.....+|..++.+.+|++|+|++|+++ .+|..+++|++|++|+|
T Consensus 420 v~~L~L~-~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLD-NQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECC-CCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 5666776 44443 34443 677777777777777333467777777777777777777776 56777777777777777
Q ss_pred CCCccccccChhhhhcCCccceeeccccC
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
++|.+.+.+|..+-..+.++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 77776666776522223455566655543
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.36 E-value=9.6e-06 Score=89.11 Aligned_cols=180 Identities=14% Similarity=0.168 Sum_probs=107.8
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCC--------------------CCCCEEEEEE
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQ--------------------GDFDFLIWVV 213 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~ 213 (897)
.+++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.++...... .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 5679999999999999977654 467899999999999999988765311 12222 2222
Q ss_pred eCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 036761 214 VSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVF 291 (897)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiv 291 (897)
.+....... .+.+...+... -..+++-++|+|+++.. .....+...+...... +.+|+
T Consensus 93 ~~~~~~~~~-~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~-~~lIl 152 (355)
T TIGR02397 93 AASNNGVDD-IREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH-VVFIL 152 (355)
T ss_pred ccccCCHHH-HHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc-eeEEE
Confidence 211111111 11111111100 01244558899998643 3344444444333333 67777
Q ss_pred ecCChh-Hhh-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 292 TTRSTE-VCG-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 292 TtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+|.+.. +.. .......+++.+++.++....+...+.......+ .+.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHH
Confidence 765543 221 1223457899999999999999887643321111 356888999999988765444
No 89
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.36 E-value=7.3e-07 Score=82.18 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC---CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ---GDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (897)
+.+++.|+|.+|+|||++++.+++..... ..-..++|+.+....+...+...|+.+++..... ..+.+++...+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34689999999999999999999876310 0135677999988889999999999999876532 356677778888
Q ss_pred HHhccCce-EEEEeccccc-c--ccccccccCCCCCCCCcEEEEecCC
Q 036761 252 NVLKEKKF-VLLLDDVWQR-V--AFTTVGVPIPPRDKSASKVVFTTRS 295 (897)
Q Consensus 252 ~~l~~~~~-LlVlDdv~~~-~--~~~~~~~~l~~~~~~~s~iivTtR~ 295 (897)
+.+...+. +||+|++... . .++.+... .+ ..+ .+||+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~-~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESN-IKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCB-EEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCC-CeEEEEECh
Confidence 88877655 9999999654 1 22333222 22 333 677776665
No 90
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.36 E-value=5.2e-06 Score=84.29 Aligned_cols=174 Identities=16% Similarity=0.196 Sum_probs=106.9
Q ss_pred CCCccchHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQL---DKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
.+.||.+..+ ..|.+.+.++..+-+.+||++|+||||||+.+.+...... ..||..|....-..-.++|.++-
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHH
Confidence 3456665544 2345566678889999999999999999999998874322 55666665543333334443322
Q ss_pred CCCCchhccccHHHHHHHHHHHhccCceEEEEeccc--cccccccccccCCCCCCCCcEEE--EecCChhH---hhhcCC
Q 036761 232 GLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVW--QRVAFTTVGVPIPPRDKSASKVV--FTTRSTEV---CGWMGA 304 (897)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~ii--vTtR~~~v---~~~~~~ 304 (897)
. =...+.++|.+|.+|.|. +..+.+.+ +|...+| .-++ .||.++.. +.....
T Consensus 214 q-----------------~~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G-~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 214 Q-----------------NEKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENG-DITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred H-----------------HHHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccC-ceEEEecccCCCccchhHHHHhc
Confidence 1 012356788999999995 34444444 4444455 5444 46777643 233344
Q ss_pred CceEEcCCCChHHHHHHHHHHh---CCCcc--CCCCc-----HHHHHHHHHHHcCCcch
Q 036761 305 HKNFEVGCLSANDARELFRQNV---GEETL--NGHPD-----IRELSETVTKECGSLPL 353 (897)
Q Consensus 305 ~~~~~l~~L~~~e~~~lf~~~~---~~~~~--~~~~~-----~~~~~~~i~~~~~glPl 353 (897)
..++.|++|..++...++.+.. +.... ..-++ ...+.+-++..|.|-.-
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 5679999999999999888743 22111 01111 23466677777887654
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=3.9e-06 Score=95.85 Aligned_cols=193 Identities=13% Similarity=0.100 Sum_probs=108.9
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.++||.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..--...+. +..+..-...+.|...-..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~~~ 88 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGRFV 88 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCCCC
Confidence 57899999999999999876654 468999999999999999987763211000 0011111222222110000
Q ss_pred CC---chhccccHHH---HHHHHHH-HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC-hhHh-hhc
Q 036761 234 FN---DSWMKKNLAE---RAVDIYN-VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS-TEVC-GWM 302 (897)
Q Consensus 234 ~~---~~~~~~~~~~---~~~~l~~-~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~-~~~ 302 (897)
.. +.......++ +...+.. -..+++-++|+|++.. ......+...+-..... .++|++|.+ ..+. ...
T Consensus 89 D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~-v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 89 DLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC-eEEEEecCCccccchHHH
Confidence 00 0000011122 1111111 1245677999999974 33455554444333333 566655554 3332 112
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.....|.+++++.++....+.+.+...... .-.+....|++.++|.+-.+..+
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 234679999999999999998876433211 12355678999999987644433
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.34 E-value=1.4e-05 Score=78.70 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=92.4
Q ss_pred HHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCC--------------------CCCCEEEEEEe-CCcCCHHHH
Q 036761 166 KVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQ--------------------GDFDFLIWVVV-SKDLQIEKI 223 (897)
Q Consensus 166 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~f~~~~wv~~-~~~~~~~~~ 223 (897)
.+.+.+..+.. ..+.++|+.|+||||+|+.+....... .+.+.. ++.. +.....+.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHH
Confidence 45556656655 678999999999999999998776322 111222 2211 111111111
Q ss_pred HHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCCh-hHhh
Q 036761 224 QEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRST-EVCG 300 (897)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~-~v~~ 300 (897)
+.+.+.+... -..+.+-++|+||+... ..++.+...+...... +.+|++|++. .+..
T Consensus 82 -~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 82 -RELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPN-TLFILITPSPEKLLP 141 (188)
T ss_pred -HHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhChH
Confidence 1111111110 01245668999999643 3344554444443334 6677777654 2211
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 301 -WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
.......+++.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i---~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G--I---S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C--C---C---HHHHHHHHHHcCCCccc
Confidence 1123457999999999999988887 2 1 1 35688999999998853
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=6.3e-06 Score=88.36 Aligned_cols=197 Identities=12% Similarity=0.062 Sum_probs=112.2
Q ss_pred CCCCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCC--CCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 153 PIEPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGD--FDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 153 ~~~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
....++|.++..+.+...+..+.. ..+.|+|+.|+||||+|..+++..-.... +... ............+.+..
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 346789999999999999987664 46899999999999999999887632110 1111 01111111122333322
Q ss_pred Hh-------CCCC-ch----hccccHHHHHHHHHHHhc-----cCceEEEEecccc--ccccccccccCCCCCCCCcEEE
Q 036761 230 KV-------GLFN-DS----WMKKNLAERAVDIYNVLK-----EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVV 290 (897)
Q Consensus 230 ~l-------~~~~-~~----~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii 290 (897)
.- ..+. .. ......+++ ..+.+++. +++-++|+|+++. ......+...+...... ..+|
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~-~~fi 175 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR-ALFI 175 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC-ceEE
Confidence 21 0000 00 011122332 34444443 4667999999974 33334443333333333 4544
Q ss_pred -EecCChhHhh-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 291 -FTTRSTEVCG-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 291 -vTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
+|++...+.. .......+++.+++.++..+++.+..... . --.+....+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444433321 11223579999999999999998843211 1 113456789999999998765443
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=5.3e-06 Score=96.96 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCCccchHHHH---HHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQLD---KVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
++++|.+..+. .+.+.+..+..+.+.|+|++|+||||||+.+++.. ..+|. .++.+. ....+
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~--~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT--RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh--cCcce---eehhhh-hhhHH---------
Confidence 56899998874 56667777777788999999999999999999876 33441 111110 00111
Q ss_pred CCCCchhccccHHHHHHHHHHHh--ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEE--ecCChh--Hhh-hc
Q 036761 232 GLFNDSWMKKNLAERAVDIYNVL--KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVF--TTRSTE--VCG-WM 302 (897)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iiv--TtR~~~--v~~-~~ 302 (897)
..+......+.+ .+++.+++|||++. ...++.+...+. .+ +.++| ||.+.. +.. ..
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g-~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NG-TITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---Cc-eEEEEEecCCChHhhhhhHhh
Confidence 111111121112 24677999999964 334444433222 23 44554 344432 211 11
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCc----cCCCCcHHHHHHHHHHHcCCcch
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEET----LNGHPDIRELSETVTKECGSLPL 353 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~glPl 353 (897)
.....+.+++++.++...++.+.+.... .....--++....|++.+.|.--
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2245689999999999999988764110 00111124566788888887643
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7.6e-06 Score=93.37 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=108.0
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCC--CEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDF--DFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
+++||-+..++.|.+++..+.. ..+.++|+.|+||||+|+.+++..--.... ..... ..++.-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 5789999999999999987766 566899999999999999997665211100 00000 0111111111121100
Q ss_pred CCCC---chhccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC-hhHh-
Q 036761 232 GLFN---DSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS-TEVC- 299 (897)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~- 299 (897)
.... +.......++..+.+ +.. .++.-++|||+++. ...+..+...+...... .++|++|.+ ..+.
T Consensus 92 h~D~~eldaas~~~Vd~iReli-~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~-~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLL-EQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY-LKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHHHHHH-HHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCC-eEEEEEECCchhhhH
Confidence 0000 000011122222111 211 23455899999974 33455555444443333 566655543 3332
Q ss_pred hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 300 GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 300 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
........+++++++.++....+.+.+....... -.+....|++.++|.+--+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 2233346799999999999999988775443222 135578888999987754433
No 96
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=6.3e-06 Score=92.96 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=106.5
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 214 (897)
+++||-+..++.|.+++..+.++ .+.++|+.|+||||+|+.+++..--.. .|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 56899999999999999877665 578999999999999999988663211 1111233332
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEe
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivT 292 (897)
+....+.++ +.+++.+.. .-..++.-++|+|++.. ......+...+...... +++|++
T Consensus 96 as~~~v~~i-R~l~~~~~~------------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~-~~fIla 155 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPY------------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH-VKFILA 155 (509)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC-eEEEEE
Confidence 222222221 112221111 01134566899999974 33444444444443333 666665
Q ss_pred cCCh-hHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 293 TRST-EVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 293 tR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
|.+. .+. ........+++++++.++....+.+.+....... -.+....|++.++|.+.-+.
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHH
Confidence 5443 332 1122235688999999998887777764433111 13456788889998775443
No 97
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=8.3e-06 Score=90.40 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=108.4
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCC-------------------CCCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQ-------------------GDFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~f~~~~wv~~ 214 (897)
+++||.+..++.|.+.+..+... .+.++|+.|+||||+|+.++....-. +.+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 56899999999999888777665 79999999999999999998743100 11112333333
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEe
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivT 292 (897)
+....+.++. .+.+.... .-..+++-++|+|++... ..+..+...+...... +++|++
T Consensus 93 as~~~vddIR-~Iie~~~~------------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~-v~fIla 152 (491)
T PRK14964 93 ASNTSVDDIK-VILENSCY------------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPH-VKFILA 152 (491)
T ss_pred ccCCCHHHHH-HHHHHHHh------------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCC-eEEEEE
Confidence 3333332221 12111110 001245668999999642 3344454444443344 666665
Q ss_pred cC-ChhHhh-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 293 TR-STEVCG-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 293 tR-~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
|. ...+.. .......+++++++.++....+.+.+......- -.+....|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 54 344422 223346789999999999999998875543221 2355778999998877543
No 98
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.30 E-value=8.1e-07 Score=92.82 Aligned_cols=292 Identities=17% Similarity=0.157 Sum_probs=180.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-CEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF-DFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..+-+.++|.|||||||++-.+.. . ...| +.+.++....-.+...+.-.+...++.+.. .-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~--~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A--ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H--hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 568899999999999999999988 4 4556 667777777777777777777777776431 223344566777
Q ss_pred hccCceEEEEeccccccc-cccccccCCCCCCCCcEEEEecCChhHhhhcCCCceEEcCCCChH-HHHHHHHHHhCCCc-
Q 036761 254 LKEKKFVLLLDDVWQRVA-FTTVGVPIPPRDKSASKVVFTTRSTEVCGWMGAHKNFEVGCLSAN-DARELFRQNVGEET- 330 (897)
Q Consensus 254 l~~~~~LlVlDdv~~~~~-~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~- 330 (897)
..++|.++|+||..+..+ -......+..+... -.|+.|+|.... ........+.+|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~-~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPR-LAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchh-hhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 888999999999865321 11111112222222 568888887532 334456778888865 78999887764221
Q ss_pred -cCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHH----HHHHHcccCCCCCCChHHHHHHHHHhhCCCCC
Q 036761 331 -LNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRD----AIKVLQTSASEFPGLENDVLRVLKFSYDSLPD 405 (897)
Q Consensus 331 -~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~----~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~ 405 (897)
..-...-...+.+|.++..|.|++|..+++..+.- ...+-.. -...+........--+....+.+..||.-|..
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11222335678899999999999999999887752 2222221 11222221111111123567789999999988
Q ss_pred ccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHHHHHHHHhcccccc---CCceEEechhHHHHH
Q 036761 406 DTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTILGNIVHACLLEEE---GDDVVKMHDLIRDMT 482 (897)
Q Consensus 406 ~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a 482 (897)
..+.-|--++.|...+... ...|.+.|-... .........+..+++.+++... ....|+.-+-+|.|+
T Consensus 240 -we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 -WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7888888888887765543 334544442211 1223344446677777776543 233444445555555
Q ss_pred HHHHhc
Q 036761 483 LWIARD 488 (897)
Q Consensus 483 ~~~~~~ 488 (897)
..+-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 544433
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=4.5e-06 Score=94.84 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCC-------------------CCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGD-------------------FDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------f~~~~wv~~ 214 (897)
.++||.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++...-... |-.++.+..
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 5679999999999999987665 46899999999999999999876521111 111112221
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH-HhccCceEEEEecccccc--ccccccccCCCCCCCCcEEEE
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQRV--AFTTVGVPIPPRDKSASKVVF 291 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iiv 291 (897)
+....+.. ..++...... -..+++-++|+|++.... ....+...+...... +++|+
T Consensus 96 As~~gVd~--------------------IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~-v~fIL 154 (709)
T PRK08691 96 ASNTGIDN--------------------IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFIL 154 (709)
T ss_pred cccCCHHH--------------------HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC-cEEEE
Confidence 11111111 1111111100 023566789999996432 233343333332233 66776
Q ss_pred ecCChh-Hh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 292 TTRSTE-VC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 292 TtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+|.+.. +. ...+....+.+++++.++....+.+.+......- -.+....|++.++|.+.-+.
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHH
Confidence 665432 21 1112234588999999999999988875443221 23567889999998875443
No 100
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.30 E-value=6.8e-08 Score=107.85 Aligned_cols=213 Identities=24% Similarity=0.248 Sum_probs=104.5
Q ss_pred CccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEec
Q 036761 541 CLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLN 620 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 620 (897)
+..+..+.+. .+.+..+-.. +..+++|.+|++.+| .+..+...+..+++|++|++++|.|+.+ ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~-~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLR-QNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccc-hhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhhe
Confidence 3344444444 3334432222 455666666666666 5555553356666666666666666665 2455556666666
Q ss_pred CCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH--hcCCCCCCEEEEEeCCcccHHHHHh
Q 036761 621 LEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA--LRGLEHLEVLSLTLNNFQDLQCVLK 698 (897)
Q Consensus 621 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~ 698 (897)
+.+|.+ ..++. +..+++|+.++++++.+.. ... +..+.+|+.+.+..|.+..+..+..
T Consensus 147 l~~N~i-~~~~~--~~~l~~L~~l~l~~n~i~~-----------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~ 206 (414)
T KOG0531|consen 147 LSGNLI-SDISG--LESLKSLKLLDLSYNRIVD-----------------IENDELSELISLEELDLGGNSIREIEGLDL 206 (414)
T ss_pred eccCcc-hhccC--CccchhhhcccCCcchhhh-----------------hhhhhhhhccchHHHhccCCchhcccchHH
Confidence 666653 44443 4556666666666655432 111 3555566666666665544332111
Q ss_pred chhccccceeEEEeccCCCcccccccccccC--CCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCccccc
Q 036761 699 SKELRRCTQALYLYSFKRSEPLDVSALAGLK--HLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLF 776 (897)
Q Consensus 699 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~ 776 (897)
. ..+..+++..+... ....+..+. +|+.+++++++.... + .....+.++..|++.++ .+..+..+..
T Consensus 207 ~----~~l~~~~l~~n~i~---~~~~l~~~~~~~L~~l~l~~n~i~~~-~--~~~~~~~~l~~l~~~~n-~~~~~~~~~~ 275 (414)
T KOG0531|consen 207 L----KKLVLLSLLDNKIS---KLEGLNELVMLHLRELYLSGNRISRS-P--EGLENLKNLPVLDLSSN-RISNLEGLER 275 (414)
T ss_pred H----HHHHHhhcccccce---eccCcccchhHHHHHHhcccCccccc-c--ccccccccccccchhhc-cccccccccc
Confidence 0 11111122222210 011122222 267777776654431 0 11345667777777766 4444444444
Q ss_pred CCCccEEEEecC
Q 036761 777 APNLKSIEVSSC 788 (897)
Q Consensus 777 l~~L~~L~L~~c 788 (897)
.+.+..+....+
T Consensus 276 ~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 276 LPKLSELWLNDN 287 (414)
T ss_pred cchHHHhccCcc
Confidence 555555555543
No 101
>PRK09087 hypothetical protein; Validated
Probab=98.28 E-value=1e-05 Score=81.38 Aligned_cols=140 Identities=15% Similarity=0.117 Sum_probs=86.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
..+.+.|+|+.|+|||+|++.+++... ..+++.. .+...+.. .+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-----------------------~~ 86 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-----------------------AA 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH-----------------------hh
Confidence 346799999999999999999887642 1133221 11111111 11
Q ss_pred ccCceEEEEeccccc----cccccccccCCCCCCCCcEEEEecCC---------hhHhhhcCCCceEEcCCCChHHHHHH
Q 036761 255 KEKKFVLLLDDVWQR----VAFTTVGVPIPPRDKSASKVVFTTRS---------TEVCGWMGAHKNFEVGCLSANDAREL 321 (897)
Q Consensus 255 ~~~~~LlVlDdv~~~----~~~~~~~~~l~~~~~~~s~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~l 321 (897)
.+ -+|++||+... ..+-.+...+.. .| ..||+|++. ++..+++.....+++++++.++-.++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVRQ--AG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHHh--CC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 11 27888999532 222222222222 23 678888874 33445556677899999999999999
Q ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 322 FRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+++++.......+ +++..-|++.+.|..-++..+
T Consensus 162 L~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 162 IFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 9998854332222 456788888888777666543
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=8.5e-06 Score=89.94 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=108.4
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE-eCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV-VSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~ 232 (897)
++++|.+..++.|.+++.++.++ .+.++|+.|+||||+|+.+++...-...+....|.. .......-...+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 67899999999999999877665 588999999999999999988763221111111110 0011111111111111100
Q ss_pred CCCchh---ccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhhh
Q 036761 233 LFNDSW---MKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCGW 301 (897)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~~ 301 (897)
..-... .....+++.+ +.+.+ .+++-++|+|++... ..+..+...+...... +.+|++| +...+...
T Consensus 96 ~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~-t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 96 LNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPH-AIFIFATTELHKIPAT 173 (397)
T ss_pred CCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHHhHHH
Confidence 000000 0111222222 22323 245568899999643 3455555444443334 6666555 43333221
Q ss_pred -cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 302 -MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 302 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
......+++.+++.++....+...+...... --.+.+..|++.++|.+--+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 1123468999999999998888876432211 12456889999999977544
No 103
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2.3e-06 Score=100.01 Aligned_cols=83 Identities=30% Similarity=0.446 Sum_probs=64.7
Q ss_pred cccEEEccCCCCCcccCccccCccCCCEeeccCCCcc-ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeec
Q 036761 568 RLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIR-ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRM 646 (897)
Q Consensus 568 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l 646 (897)
.++.|+|++|.....+|..++.+.+|++|+|++|.++ .+|..++.+++|+.|+|++|.+.+.+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 3677888888444567878888888888888888877 77878888888888888888776677765 788888888888
Q ss_pred cccCC
Q 036761 647 FGVGD 651 (897)
Q Consensus 647 ~~~~~ 651 (897)
++|..
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 87653
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=1e-05 Score=88.52 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=98.2
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|+++.+++|.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~----~ 190 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVG----S 190 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecch----H
Confidence 4568999999999886632 124568999999999999999999977 3333 22211 1
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc----------------ccccccccCCC-CC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV----------------AFTTVGVPIPP-RD 283 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 283 (897)
.+.... ++ . .......+.+.. ...+.+|++||++... .+..+...+.. ..
T Consensus 191 ~l~~~~---~g--------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 191 ELVRKY---IG--------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred HHHHHh---hh--------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 111110 00 0 111122222222 3467899999986421 01111111111 11
Q ss_pred CCCcEEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 284 KSASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 284 ~~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.++.+||.||..... .........+.++..+.++..++|+.++.......... ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 223788888886533 11112345789999999999999998875543222222 356667776654
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.22 E-value=7e-06 Score=83.62 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=97.0
Q ss_pred CCCc-cchHH-HHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTV-GMQSQ-LDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~v-Gr~~~-~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
++|+ |.... +..+.++... ...+.+.|+|..|+|||+||+.+++..... . ....+++..... ..+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~------~~~---- 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPL------LAF---- 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhH------HHH----
Confidence 4555 55433 3444444332 345678999999999999999999875321 2 234444433211 000
Q ss_pred CCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc--cccccccCCCC-CCCCcEEEEecCChhHh--------h
Q 036761 232 GLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA--FTTVGVPIPPR-DKSASKVVFTTRSTEVC--------G 300 (897)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~~~~l~~~-~~~~s~iivTtR~~~v~--------~ 300 (897)
... ...-+||+||+..... ...+...+... ..+...||+|++..... +
T Consensus 86 --------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 86 --------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred --------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 011 2334788999964322 12222222111 12213477777654321 1
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhh
Q 036761 301 WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAM 362 (897)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 362 (897)
.+.....+++++++.++-..++.+.+....... -++....+++.+.|.+..+..+...+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 333346789999999887777776543222122 24567888888999998877665554
No 106
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.22 E-value=1e-05 Score=80.96 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=113.5
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEE-EEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLI-WVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|.+..++-|.+.+.....++...+|++|.|||+-|..++...-..+-|.+.+ -.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Ki------ 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKI------ 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhh------
Confidence 56799999999999998877889999999999999999999888775445564443 23444433222111111
Q ss_pred CCchhccccHHHHHHHHHHHh--ccCc-eEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChhHh-h-hcCCCc
Q 036761 234 FNDSWMKKNLAERAVDIYNVL--KEKK-FVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTEVC-G-WMGAHK 306 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~-~-~~~~~~ 306 (897)
.+.+.+........ ..++ -.+|||+++. .+.|..++..+...... ++.|+.+...... . ......
T Consensus 110 -------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~-trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 110 -------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRT-TRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred -------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccc-eEEEEEcCChhhCChHHHhhHH
Confidence 11111111110000 0123 3788999975 46788876665554444 6666655554321 1 111224
Q ss_pred eEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 307 NFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 307 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.+..++|.+++...-++..+..+...-+ .+..+.|++.++|--
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 5889999999999999988866553333 355788999998853
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.9e-05 Score=90.46 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=108.5
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCC--EEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFD--FLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
.++||.+..++.|.+.+..+... .+.++|+.|+||||+|+.+++...-..... ...+- .+..-.-.+.|...-
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCC
Confidence 56799999999999999877654 689999999999999999988763211110 00000 001111111121111
Q ss_pred CCCCch---hccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhh
Q 036761 232 GLFNDS---WMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG 300 (897)
Q Consensus 232 ~~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~ 300 (897)
....-. ......+++. .+.+.+ .+++-++|+|++... .....+...+...... +.+|++| ....+..
T Consensus 100 h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~-~~fIl~tte~~kll~ 177 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-VKFIFATTEIRKVPV 177 (598)
T ss_pred CCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCC-eEEEEEeCChhhhhH
Confidence 000000 0011122222 122222 244557899999643 3344444444333333 6666555 4333321
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 301 -WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
.......+++..++.++....+.+.+......-+ .+....|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 1223457899999999999999887754331111 35678889999998865543
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.8e-05 Score=85.46 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=102.8
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCC------CCCCEE-EEEEeCCcCCHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQ------GDFDFL-IWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~f~~~-~wv~~~~~~~~~~~~~~ 226 (897)
++++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ..|... +-+......+..++ +.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HH
Confidence 5789999999999999987654 488899999999999999998765321 112111 11111111111111 11
Q ss_pred HHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhh-hc
Q 036761 227 IGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG-WM 302 (897)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~-~~ 302 (897)
+.+.+... -..+++-++++|++... ..+..+...+...... +.+|++| ....+.. ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~-~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAH-AIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCc-eEEEEEeCCcccCCHHHH
Confidence 11111100 01244558999998643 2344443333332233 5555555 3333321 12
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
.....++.++++.++....+...+......-+ .+....+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 23457899999999999988887654332122 356788888999866533
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.3e-05 Score=91.12 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=105.6
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 214 (897)
+++||.+..++.+.+++..+..+ .+.++|+.|+||||+|+.+++..--.. .|.-.+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 56899999999999999876654 568999999999999999987762111 1111222221
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEe
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivT 292 (897)
+....+.++ +.+...... .-..+++-++|+|+++.. .....+...+...... +.+|++
T Consensus 96 ~~~~~vd~i-r~l~~~~~~------------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~-~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDAM-RELLDNAQY------------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILA 155 (527)
T ss_pred cccCCHHHH-HHHHHHHhh------------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC-EEEEEE
Confidence 111111111 111111100 001355679999999743 2344444444443333 666665
Q ss_pred cCCh-hHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 293 TRST-EVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 293 tR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
|.+. .+. ........+++++++.++....+.+.+...... .-.+....|++.++|.+- |+..+
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5443 221 111123568999999999998888876433211 123456888999999775 44443
No 110
>PF14516 AAA_35: AAA-like domain
Probab=98.20 E-value=0.00024 Score=76.27 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=118.8
Q ss_pred CCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-----CCHHHHH----HH
Q 036761 156 PTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-----LQIEKIQ----EI 226 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~----~~ 226 (897)
-.|.|...-+++.+.+.+ ....+.|.|+-.+|||+|..++.+..... . ...+++++... .+....+ ..
T Consensus 12 ~Yi~R~~~e~~~~~~i~~-~G~~~~I~apRq~GKTSll~~l~~~l~~~-~-~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQ-PGSYIRIKAPRQMGKTSLLLRLLERLQQQ-G-YRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred cccCchHHHHHHHHHHhc-CCCEEEEECcccCCHHHHHHHHHHHHHHC-C-CEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 447998667777777754 34689999999999999999998888432 3 44557776542 2445444 44
Q ss_pred HHHHhCCCCch---hc--cccHHHHHHHHHHHh---ccCceEEEEeccccccc--------------cccccccCCCCCC
Q 036761 227 IGKKVGLFNDS---WM--KKNLAERAVDIYNVL---KEKKFVLLLDDVWQRVA--------------FTTVGVPIPPRDK 284 (897)
Q Consensus 227 i~~~l~~~~~~---~~--~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~ 284 (897)
+.+++++...- +. ..........+.+.+ .+++.+|++|+++.... |..-+..-+....
T Consensus 89 i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~ 168 (331)
T PF14516_consen 89 ISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQK 168 (331)
T ss_pred HHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccce
Confidence 55555554311 11 112223333444432 25899999999974321 1111111111111
Q ss_pred CCcEEEEecCChhH-h----hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 285 SASKVVFTTRSTEV-C----GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 285 ~~s~iivTtR~~~v-~----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
= +-|++.+..... . +-......+.|++++.+|...|+.++-..-. ....++|...+||+|.-+..++
T Consensus 169 L-~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~~~~ 240 (331)
T PF14516_consen 169 L-RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQKAC 240 (331)
T ss_pred E-EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHHHHH
Confidence 1 112222211111 1 1123345789999999999999987743211 2238999999999999999999
Q ss_pred hhhhcC
Q 036761 360 RAMACK 365 (897)
Q Consensus 360 ~~l~~~ 365 (897)
..+...
T Consensus 241 ~~l~~~ 246 (331)
T PF14516_consen 241 YLLVEE 246 (331)
T ss_pred HHHHHc
Confidence 999764
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.9e-05 Score=89.54 Aligned_cols=196 Identities=11% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCCccchHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEP-VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++..--....+. ..++.-...+.|......
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCCCC
Confidence 567999999999999887765 467889999999999999999887632111000 011111111111111000
Q ss_pred CCchh---ccccHHHHHHHHHHH-----hccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCC-hhHhhh-
Q 036761 234 FNDSW---MKKNLAERAVDIYNV-----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRS-TEVCGW- 301 (897)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~~- 301 (897)
..... .....++. ..+.+. ..+++-++|+|++... ..+..+...+...... ..+|++|.+ ..+...
T Consensus 89 Dv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~-~ifILaTt~~~kll~TI 166 (624)
T PRK14959 89 DVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPAR-VTFVLATTEPHKFPVTI 166 (624)
T ss_pred ceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCC-EEEEEecCChhhhhHHH
Confidence 00000 00111111 112222 2356679999999643 3344554444332233 556665554 333211
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc-hHHHHHHhhh
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP-LALIITGRAM 362 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~~l 362 (897)
......+++++++.++....+...+......- -.+.+..|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22235689999999999999988764432111 2456788999999865 6777666544
No 112
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=2.5e-07 Score=103.25 Aligned_cols=102 Identities=26% Similarity=0.400 Sum_probs=60.1
Q ss_pred cccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEee
Q 036761 519 WENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLD 597 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 597 (897)
+.++..+++.+|.+..+.. +..+++|++|+++ .|.|+.+.. +..++.|+.|++++| .+..++ .+..+.+|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecc-ccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhccc
Confidence 3456666666666666655 5556666666666 555555554 455555666666666 555544 444466666666
Q ss_pred ccCCCccccChh-hhcCCcCcEecCCCCc
Q 036761 598 LSGTAIRELPKE-LNALENLQCLNLEETH 625 (897)
Q Consensus 598 L~~~~i~~lp~~-i~~L~~L~~L~L~~~~ 625 (897)
+++|.++.++.. +..+.+|+.+.+.+|.
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666666655443 4555666666666664
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1e-07 Score=104.65 Aligned_cols=161 Identities=27% Similarity=0.310 Sum_probs=93.8
Q ss_pred CccCCCcccccccceEeecccccccccccc---------------------------------cCCccceeeehhccccc
Q 036761 509 GLTKPPNVREWENARRFSLMETQIRTLSAV---------------------------------PTCLHLLTLFLIFNEEL 555 (897)
Q Consensus 509 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~---------------------------------~~~~~L~~L~l~~~~~l 555 (897)
+.+++..+..+..+|+|-+.++++....++ ...-.|.+.+++ +|.+
T Consensus 98 ~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fs-yN~L 176 (1096)
T KOG1859|consen 98 DPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFS-YNRL 176 (1096)
T ss_pred CCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcc-hhhH
Confidence 334445566677888888888776543222 111223333444 3444
Q ss_pred cccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhh
Q 036761 556 EMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQL 634 (897)
Q Consensus 556 ~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~ 634 (897)
..+... +.-++.|+.|||++| .+++.. .+..|++|++|||++|.+..+|.- ...+ +|+.|++++|. ++.+-.
T Consensus 177 ~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g-- 249 (1096)
T KOG1859|consen 177 VLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG-- 249 (1096)
T ss_pred HhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--
Confidence 333332 555667777777777 555554 666677777777777777766642 2233 37777777775 355543
Q ss_pred hhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcc
Q 036761 635 ISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQ 691 (897)
Q Consensus 635 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 691 (897)
+.+|.+|+.|++++|-+.. ..-+.-|..|..|+.|++.+|.+-
T Consensus 250 ie~LksL~~LDlsyNll~~--------------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSE--------------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhc--------------chhhhHHHHHHHHHHHhhcCCccc
Confidence 6777777777777654321 113334555566777777777653
No 114
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=5.9e-07 Score=88.59 Aligned_cols=106 Identities=8% Similarity=-0.028 Sum_probs=53.6
Q ss_pred CCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 680 LEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
+++|+...|..............++++..+.+..|+..+.........++.+..|+++.++ +.++..-.....|++|..
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~d 253 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVD 253 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhhe
Confidence 3334443343333332333333445666666665543222222244455666666766552 222211111446788888
Q ss_pred EEEeCCCCCCCCc-------ccccCCCccEEEEe
Q 036761 760 IQIYGCHRLKDLT-------FLLFAPNLKSIEVS 786 (897)
Q Consensus 760 L~L~~c~~l~~l~-------~l~~l~~L~~L~L~ 786 (897)
|.+.+++-...+. .++.+++++.|+=+
T Consensus 254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 8888887655443 24567777777644
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=6.4e-06 Score=83.73 Aligned_cols=151 Identities=14% Similarity=0.176 Sum_probs=89.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|..|+|||+|++.+++....+ -..++|++..+ +... ...+.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~--------------------~~~~~~~~~ 96 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR--------------------GPELLDNLE 96 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh--------------------hHHHHHhhh
Confidence 3678999999999999999998876322 24466766432 1110 012223333
Q ss_pred cCceEEEEeccccc---ccccc-ccccCCCCCCCCcEEEEecCChhH---------hhhcCCCceEEcCCCChHHHHHHH
Q 036761 256 EKKFVLLLDDVWQR---VAFTT-VGVPIPPRDKSASKVVFTTRSTEV---------CGWMGAHKNFEVGCLSANDARELF 322 (897)
Q Consensus 256 ~~~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~~s~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~lf 322 (897)
+-. +||+||+... ..|.. +...+......|..+|+|++...- .+++.....+++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 322 6788999632 34433 222222111112678888876432 233444567899999999999999
Q ss_pred HHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 323 RQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+.++......-+ +++..-|++.+.|..-.+..+
T Consensus 176 ~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRGLHLT---DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 866643221122 466788888888766555443
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3e-05 Score=88.28 Aligned_cols=197 Identities=12% Similarity=0.094 Sum_probs=108.5
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+..++.|.+++..+.+. .+.++|+.|+||||+|+.+++...-....+ + ..++.-...+.|...-+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhhcccCC
Confidence 57899999999999999887665 468999999999999999987653111100 0 000000111111100000
Q ss_pred CCc-----hhccccHHHH---HHHHHH-HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEec-CChhHhh-
Q 036761 234 FND-----SWMKKNLAER---AVDIYN-VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG- 300 (897)
Q Consensus 234 ~~~-----~~~~~~~~~~---~~~l~~-~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~- 300 (897)
..+ .......++. ...+.. -..+++-++|+|++.. ......+...+...... ..+|++| ....+..
T Consensus 86 ~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~-~~fIL~tte~~kll~T 164 (584)
T PRK14952 86 SIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH-LIFIFATTEPEKVLPT 164 (584)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC-eEEEEEeCChHhhHHH
Confidence 000 0000111111 111111 1124556889999963 33445554444443333 5555544 4444432
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHHHhhh
Q 036761 301 WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIITGRAM 362 (897)
Q Consensus 301 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~~~~l 362 (897)
.......+++.+++.++..+.+...+......- -.+....|++.++|.+- |+..+-.++
T Consensus 165 I~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 165 IRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 223356799999999999988888765433111 13456788899999774 555554443
No 117
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.15 E-value=4.5e-06 Score=88.06 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=64.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCCCCchhccccH
Q 036761 167 VWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL--QIEKIQEIIGKKVGLFNDSWMKKNL 243 (897)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 243 (897)
+++.+.. +.-...+|+|++|+||||||+.+|+..... +|+.++||.+.+.. .+.++++.+...+-.. ..+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~~ 235 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPAE 235 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCHH
Confidence 3444432 456788999999999999999999988644 89999999998887 7777888775322111 1111111
Q ss_pred HH------HHHHHHHH-hccCceEEEEeccc
Q 036761 244 AE------RAVDIYNV-LKEKKFVLLLDDVW 267 (897)
Q Consensus 244 ~~------~~~~l~~~-l~~~~~LlVlDdv~ 267 (897)
.+ ....-..+ -.+++++|++|++.
T Consensus 236 ~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 236 RHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 11111111 35799999999994
No 118
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.3e-05 Score=88.56 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=108.4
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE-eCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV-VSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~ 232 (897)
.++||.+..++.|.+.+..+.+. .+.++|+.|+||||+|+.+++..--....+.-.|.. +....+.-...+.+...-.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 57899999999999988876654 588999999999999999987763211111001110 0011111111111111100
Q ss_pred CCCchh---ccccHHHHHHHHHHH----hccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhh-h
Q 036761 233 LFNDSW---MKKNLAERAVDIYNV----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG-W 301 (897)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~-~ 301 (897)
..-... .....+++...+... ..+++-++|+|+++.. .....+...+...... +.+|++| +...+.. .
T Consensus 96 ~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~-tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 96 LNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPH-AIFIFATTELHKIPATI 174 (620)
T ss_pred CCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhHHH
Confidence 000000 011122322221111 2345568899998653 3344454444443333 5555444 4444432 2
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
......+++.+++.++....+.+.+......- -.+.+..|++.++|..- |+..+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 33456799999999999888887664322111 13567889999999554 44433
No 119
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=3.7e-05 Score=88.52 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=104.8
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|.+..++.|.+++..+.+ +.+.++|+.|+||||+|+.++...--....+ .+-.+.. .... .+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~-------C~~~---~~~ 85 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQE-------CIEN---VNN 85 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhH-------HHHh---hcC
Confidence 5679999999999999987654 4668999999999999999987652111000 0000000 0000 000
Q ss_pred CCch-----hccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEE-EecCChhHhh
Q 036761 234 FNDS-----WMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVV-FTTRSTEVCG 300 (897)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~ii-vTtR~~~v~~ 300 (897)
..+. ......++ ++.+.+.+ .+++-++|+|++.. ...+..+...+-..... +.+| +|++...+..
T Consensus 86 ~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~-tifILaTte~~KLl~ 163 (725)
T PRK07133 86 SLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKH-VIFILATTEVHKIPL 163 (725)
T ss_pred CCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCc-eEEEEEcCChhhhhH
Confidence 0000 00011121 12222222 25566899999964 33455554444333333 5555 4544444432
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 301 -WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
.......+++.+++.++....+...+....... -.+.+..|++.++|.+- |+..+
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 223346799999999999988887654332111 13457889999988764 44433
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=3.5e-05 Score=91.35 Aligned_cols=189 Identities=11% Similarity=0.058 Sum_probs=105.6
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.++||.+..++.|..++..+.+. .+.++|+.|+||||+|+.+++...-...... ..++.-...+.|...-..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHHcCCCC
Confidence 56799999999999999877664 5789999999999999999887631111000 000000001111100000
Q ss_pred CC-----chhccccHHHHHHHHHH-----HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecC-ChhHhh
Q 036761 234 FN-----DSWMKKNLAERAVDIYN-----VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTR-STEVCG 300 (897)
Q Consensus 234 ~~-----~~~~~~~~~~~~~~l~~-----~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR-~~~v~~ 300 (897)
.. +.......+++.. +++ -..+++-++|||+++. ...+..+...+...... +.+|++|. ...+..
T Consensus 88 ~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~-~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH-LKFIFATTEPDKVIG 165 (824)
T ss_pred CCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC-eEEEEEeCChhhhhH
Confidence 00 0000011122211 211 1235556889999974 34444554444443333 56665554 334432
Q ss_pred -hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 301 -WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 301 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
.......|++..++.++...++.+.+....... -.+....|++.++|.+..+
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 223356799999999999988888764332111 1345678899999987433
No 121
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=1.1e-05 Score=85.60 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=63.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc--CCHHHHHHHHHHHhCCCCchhcccc----HHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD--LQIEKIQEIIGKKVGLFNDSWMKKN----LAERA 247 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~ 247 (897)
+.-..++|+|++|+|||||++.+++... .++|+..+|+.+.+. .++.++++.+...+-...-...... .....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 4567899999999999999999999885 348999999999866 7899999998443311110000111 01111
Q ss_pred HHHHHH-hccCceEEEEecccc
Q 036761 248 VDIYNV-LKEKKFVLLLDDVWQ 268 (897)
Q Consensus 248 ~~l~~~-l~~~~~LlVlDdv~~ 268 (897)
+....+ -.+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222 358999999999953
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=6e-05 Score=84.51 Aligned_cols=176 Identities=13% Similarity=0.137 Sum_probs=107.1
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCC--------------------CCCEEEEEE
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQG--------------------DFDFLIWVV 213 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 213 (897)
+++||-+..++.|...+..+..+ ++.++|+.|+||||+|+.+++..--.. +++ ++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 56899999999999999877665 568999999999999998887652111 111 11221
Q ss_pred eCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH----hccCceEEEEeccccc--cccccccccCCCCCCCCc
Q 036761 214 VSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSAS 287 (897)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s 287 (897)
.+.... .+++...+... ..+++-++|+|++... .....+...+...... +
T Consensus 93 aas~~g-----------------------Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~-t 148 (535)
T PRK08451 93 AASNRG-----------------------IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY-V 148 (535)
T ss_pred cccccC-----------------------HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc-e
Confidence 111111 22222222110 1145568899999643 3344444444333333 6
Q ss_pred EEEEecCCh-hHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 288 KVVFTTRST-EVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 288 ~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
++|++|.+. .+. ........+++.+++.++....+.+.+......- -.+.+..|++.++|.+.-+..+
T Consensus 149 ~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 149 KFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 777666553 221 1122246789999999999999887765433211 2456789999999988555443
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=6.9e-05 Score=84.13 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccC---CC----------------CCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLG---QG----------------DFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~---~~----------------~f~~~~wv~~ 214 (897)
.+++|.+..++.+.+++..+... .+.++|+.|+||||+|+.++....- .. .|..++++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 56799999999999999876554 5678999999999999998876521 00 0111222211
Q ss_pred CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH-HhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEE
Q 036761 215 SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVF 291 (897)
Q Consensus 215 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiv 291 (897)
+....+.. ...+...+.. -..+++-++|+|+++.. .....+...+...... ..+|+
T Consensus 96 as~~gvd~--------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~-~v~Il 154 (486)
T PRK14953 96 ASNRGIDD--------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR-TIFIL 154 (486)
T ss_pred ccCCCHHH--------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC-eEEEE
Confidence 11111111 1111111111 01355669999998643 3344444334333333 45554
Q ss_pred ec-CChhHhh-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 292 TT-RSTEVCG-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 292 Tt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
+| +...+.. .......+.+.+++.++....+...+....... -.+.+..|++.++|.+..+..
T Consensus 155 ~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred EECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 44 4333321 122345789999999999988888764332111 235577888899987654443
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.9e-05 Score=83.62 Aligned_cols=179 Identities=15% Similarity=0.150 Sum_probs=104.5
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC---------------------CCCEEEEE
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG---------------------DFDFLIWV 212 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~f~~~~wv 212 (897)
++++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+++..-... +++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 6789999999999999987665 5688999999999999999987653210 111 1111
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH-HhccCceEEEEeccccc--cccccccccCCCCCCCCcEE
Q 036761 213 VVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKV 289 (897)
Q Consensus 213 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~i 289 (897)
.........++ .++...+.. -..+++-++|+|++... .....+...+...... ..+
T Consensus 96 ~g~~~~gid~i--------------------r~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~-~~~ 154 (451)
T PRK06305 96 DGASHRGIEDI--------------------RQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH-VKF 154 (451)
T ss_pred eccccCCHHHH--------------------HHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC-ceE
Confidence 11111111111 111111110 11256678899998642 2334443344333333 666
Q ss_pred EEecCC-hhHhh-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 290 VFTTRS-TEVCG-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 290 ivTtR~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
|++|.+ ..+.. .......+++++++.++....+...+......- -.+.+..|++.++|.+- |+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 666643 32321 122345789999999999988887764332111 24567889999999664 44443
No 125
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.09 E-value=0.00061 Score=67.74 Aligned_cols=214 Identities=16% Similarity=0.178 Sum_probs=117.9
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.+|||.++-++++.=++.. +..--|.++|++|.||||||.-+++...+. +-++.+....-..-+..|+.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn------~k~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN------LKITSGPALEKPGDLAAILT 99 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC------eEecccccccChhhHHHHHh
Confidence 6789999998888655542 567789999999999999999999988431 11222221111111111221
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc------------------------cccccccccCCCCCCC
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR------------------------VAFTTVGVPIPPRDKS 285 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------------------~~~~~~~~~l~~~~~~ 285 (897)
.+ +... ++.+|.+... ..-..+...+|..
T Consensus 100 ~L-----------------------e~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppF--- 152 (332)
T COG2255 100 NL-----------------------EEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPF--- 152 (332)
T ss_pred cC-----------------------CcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCe---
Confidence 11 1111 2333444210 0011112222221
Q ss_pred CcEEEEecCChhHhhhcC--CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhh
Q 036761 286 ASKVVFTTRSTEVCGWMG--AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMA 363 (897)
Q Consensus 286 ~s~iivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~ 363 (897)
+-|=.|||.-.+..-+. -..+.+++..+.+|-.+...+.+..-....+ ++.+.+|+++..|-|--..-+-+..+
T Consensus 153 -TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 153 -TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred -eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 44557888765533222 2345789999999999999988853332222 35689999999999976554444433
Q ss_pred cC--------CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCC
Q 036761 364 CK--------KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPD 405 (897)
Q Consensus 364 ~~--------~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~ 405 (897)
.- -+..--..+++.+.-....+...+..+..++--.|+.=|-
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPV 278 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPV 278 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCc
Confidence 20 1222233344444444444444444555555555544443
No 126
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.09 E-value=2.3e-05 Score=87.39 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|..|+|||+|++++++.......-..+++++ ..++...+...++... .....+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~---------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH---------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh---------hHHHHHHHHhc
Confidence 35689999999999999999998653222223445543 3456666665553210 11233444444
Q ss_pred cCceEEEEecccccc---c-cccccccCCCCCCCCcEEEEecCCh---------hHhhhcCCCceEEcCCCChHHHHHHH
Q 036761 256 EKKFVLLLDDVWQRV---A-FTTVGVPIPPRDKSASKVVFTTRST---------EVCGWMGAHKNFEVGCLSANDARELF 322 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~---~-~~~~~~~l~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 322 (897)
+.-+||+||+.... . .+.+...+......+..||+|+... .+.+++...-.+.+++++.++-.+++
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 34478899995421 1 1223222221111225688887653 22344555667899999999999999
Q ss_pred HHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhh
Q 036761 323 RQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRA 361 (897)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 361 (897)
.+++...... ..--+++..-|++.++|.|-.+.-+...
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 9988543211 1222567899999999999877655433
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.7e-05 Score=87.00 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=109.4
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.++||.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++......... ....++.....+.|......
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~ 89 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAV 89 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCC
Confidence 5789999999999998877655 4568999999999999999987763111100 00111122223333222111
Q ss_pred CC---chhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCC-hhHhh-h
Q 036761 234 FN---DSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRS-TEVCG-W 301 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~-~ 301 (897)
.. +.......++. ..+.+.+ .+++-++|+|++... .....+...+...... +.+|++|.+ ..+.. .
T Consensus 90 d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 90 DVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATTEVHKVPATI 167 (585)
T ss_pred eEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeCChhhhhHHH
Confidence 00 00001112222 1122222 245668999999643 3344454444333333 666665544 33322 1
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
......+.+..++.++....+.+.+......-+ .+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223456889999999999888887754331111 356789999999988655443
No 128
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.07 E-value=2.2e-05 Score=78.71 Aligned_cols=159 Identities=15% Similarity=0.137 Sum_probs=90.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|..|+|||.|.+++++.......-..+++++ ..++...+...+... . ...+++.++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-------~----~~~~~~~~~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG-------E----IEEFKDRLR 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-------S----HHHHHHHHC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc-------c----chhhhhhhh
Confidence 45689999999999999999999874322223466654 345555555444221 1 123334444
Q ss_pred cCceEEEEecccccc---ccccc-cccCCCC-CCCCcEEEEecCChh---------HhhhcCCCceEEcCCCChHHHHHH
Q 036761 256 EKKFVLLLDDVWQRV---AFTTV-GVPIPPR-DKSASKVVFTTRSTE---------VCGWMGAHKNFEVGCLSANDAREL 321 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~---~~~~~-~~~l~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 321 (897)
.-=+|++||++... .|... ...+... ..| .+||+|++... ..+++...-.+++++++.++...+
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 33478899996532 22221 1111111 123 68999996642 234455566899999999999999
Q ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 322 FRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+.+.+......-+ ++++.-|++.+.+..-.+.
T Consensus 175 l~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 175 LQKKAKERGIELP---EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTT--S----HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHH
Confidence 9998854432222 4566777777665544443
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.06 E-value=3.2e-05 Score=80.38 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=80.0
Q ss_pred CCCccchHHHHHHHHH---hc------------cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 155 EPTVGMQSQLDKVWSC---LV------------EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
..++|.+..+++|.+. .. .+....+.++|++|+||||+|+.+++.......-....++.++..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA-- 83 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH--
Confidence 3578888777666432 21 023456889999999999999999876421111111112332221
Q ss_pred HHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc----------cccccccccCCCCCCCCcEE
Q 036761 220 IEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR----------VAFTTVGVPIPPRDKSASKV 289 (897)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~i 289 (897)
++. ... ...........+.. .. .-+|++|++... ...+.+...+...... ..+
T Consensus 84 --~l~----~~~-------~g~~~~~~~~~~~~-a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~-~~v 146 (261)
T TIGR02881 84 --DLV----GEY-------IGHTAQKTREVIKK-AL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE-FVL 146 (261)
T ss_pred --Hhh----hhh-------ccchHHHHHHHHHh-cc--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC-EEE
Confidence 111 110 01111111222221 12 348899999642 1223333333332222 456
Q ss_pred EEecCChhH----------hhhcCCCceEEcCCCChHHHHHHHHHHhCC
Q 036761 290 VFTTRSTEV----------CGWMGAHKNFEVGCLSANDARELFRQNVGE 328 (897)
Q Consensus 290 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 328 (897)
|+++...+. .+++ ...+.+++++.+|..+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHHH
Confidence 666554332 1221 346899999999999999887754
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=9.2e-05 Score=85.57 Aligned_cols=194 Identities=13% Similarity=0.067 Sum_probs=108.7
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|.+..++.|..++..+.. ..+.++|+.|+||||+|+.+++..--.. .+... ......-...+.+......
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~~g~h~ 90 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIAAGNAL 90 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHhcCCCc
Confidence 5679999999999999887654 6788999999999999999988763211 11000 0111112222222221111
Q ss_pred CC---chhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCC-hhHhh-h
Q 036761 234 FN---DSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRS-TEVCG-W 301 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~-~ 301 (897)
.. +.......+++.+.+ +.+ .+++-++|+|+++.. ..+..+...+...... ..+|++|.+ ..+.. .
T Consensus 91 D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~-tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 91 DVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR-VVFVLATTDPQRVLPTI 168 (620)
T ss_pred cEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcC-eEEEEEeCChhhhhHHH
Confidence 00 000011122222211 211 245568899999743 3455554444443333 555555544 33322 1
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
......+++..++.++....+...+......-+ .+.+..|++.++|.+..+..+
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223456888999999988888876654321111 345788999999987655433
No 131
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=6.7e-05 Score=86.70 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=107.4
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccC---------------------CCCCCEEEEE
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLG---------------------QGDFDFLIWV 212 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~f~~~~wv 212 (897)
++++|.+..++.|.+++..+... .+.++|+.|+||||+|+.++....- ..+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 56899999999999999877664 5789999999999999998776521 113332 222
Q ss_pred EeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEE
Q 036761 213 VVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVV 290 (897)
Q Consensus 213 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~ii 290 (897)
..+....+.++. .++.++.... ..+++-++|+|++... ..+..+...+...... +.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~P------------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~-tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIPP------------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY-AIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhCc------------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC-eEEE
Confidence 222222222221 1111111100 1234558899998643 3455555544443333 5655
Q ss_pred E-ecCChhHhhh-cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 291 F-TTRSTEVCGW-MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 291 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
+ ||+...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 4454444322 233567999999999999999887654332222 345788999999966543
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.05 E-value=5.9e-05 Score=90.67 Aligned_cols=179 Identities=14% Similarity=0.134 Sum_probs=100.3
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEE-EEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIW-VVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~w-v~~~~~~~~~~~~~~i~~ 229 (897)
+++|||++++.++++.|......-+.++|++|+||||+|+.++++..... -.+..+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------------
Confidence 67899999999999998876666777999999999999999998763211 1123333 222210
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc-------ccc--cccccCCCCCCCCcEEEEecCChhH
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV-------AFT--TVGVPIPPRDKSASKVVFTTRSTEV 298 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~--~~~~~l~~~~~~~s~iivTtR~~~v 298 (897)
... .. .....++....+.+.+. +.+.+|++|++.... ..+ .+..+ .-..|.-++|-||...+.
T Consensus 255 -~ag--~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp--~l~~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 -QAG--AS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKP--ALARGELRTIAATTWAEY 328 (852)
T ss_pred -hcc--cc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhH--HhhCCCeEEEEecCHHHH
Confidence 000 00 11112222222222222 468999999985421 111 12222 223344677877776432
Q ss_pred hh-------hcCCCceEEcCCCChHHHHHHHHHHhCCCcc-CCCCcHHHHHHHHHHHcCCc
Q 036761 299 CG-------WMGAHKNFEVGCLSANDARELFRQNVGEETL-NGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 299 ~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~~~gl 351 (897)
.. .......+.+++++.+++.+++......-.. ..-.-..+....+++.+.+.
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 11 1123357999999999999997654422110 01111234456666666543
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=6.7e-05 Score=82.44 Aligned_cols=170 Identities=16% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|+++.++++.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----H
Confidence 4568999999999876531 235678999999999999999999876 222 222211 1
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc------------c-ccccccc---CCC-CC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV------------A-FTTVGVP---IPP-RD 283 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~-~~~~~~~---l~~-~~ 283 (897)
.+. ... .... ......+.+.. ...+.+|+|||++... . ...+... +.. ..
T Consensus 200 ~l~----~~~-------~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 200 ELV----QKF-------IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred HHh----Hhh-------ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 111 111 0111 11222222222 3467899999996421 0 0111111 110 11
Q ss_pred CCCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 284 KSASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 284 ~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.++..||.||...+... .. .-...+.++..+.++-.++|+.++.......... ...+++.+.|.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 12367888887654311 11 2245789999999999999998875443222223 35566666664
No 134
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=0.00041 Score=73.76 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=116.8
Q ss_pred CCCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 154 IEPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+...+||+.+++.+.+|+.. ...+-+.|.|-+|.|||.+...++.+......--+++++++..-.....++..|..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 36679999999999988864 56788999999999999999999988743222235678887776777888888877
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccC--ceEEEEecccccc--ccccccccCCCCCCCCcEEEEecCCh--hH----h
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEK--KFVLLLDDVWQRV--AFTTVGVPIPPRDKSASKVVFTTRST--EV----C 299 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~--~~~~~~~~l~~~~~~~s~iivTtR~~--~v----~ 299 (897)
.+-.... ...+..+....+.+...+. .+|+|+|..+... .-..+...|.+....++++|+.---. +. .
T Consensus 229 ~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 229 SLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHh
Confidence 7611000 1112244555666666554 5899999986421 11111111111111125555432211 11 1
Q ss_pred hhc-----CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC
Q 036761 300 GWM-----GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS 350 (897)
Q Consensus 300 ~~~-----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g 350 (897)
... -....+..++.+.++-.+++..+..... ..+.+...++-+++++.|
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAA 360 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhcc
Confidence 111 1234678899999999999999885443 122223344445555543
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.01 E-value=5.5e-06 Score=58.71 Aligned_cols=34 Identities=47% Similarity=0.717 Sum_probs=16.6
Q ss_pred CCCEeeccCCCccccChhhhcCCcCcEecCCCCc
Q 036761 592 SLQHLDLSGTAIRELPKELNALENLQCLNLEETH 625 (897)
Q Consensus 592 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 625 (897)
+|++|++++|+|+.+|..+++|++|++|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4455555555555555445555555555555554
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.01 E-value=0.00014 Score=78.30 Aligned_cols=145 Identities=14% Similarity=0.171 Sum_probs=83.3
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
++++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .....+...+.....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~~i~~~l~~~~~- 93 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRIDFVRNRLTRFAS- 93 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHHHHHHHHHHHHH-
Confidence 5679999999999999877654 577779999999999999998875 222 23344443 121111111111000
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEeccccc--c-ccccccccCCCCCCCCcEEEEecCChhHh--hhcCCCceE
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--V-AFTTVGVPIPPRDKSASKVVFTTRSTEVC--GWMGAHKNF 308 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~-~~~~~~~~l~~~~~~~s~iivTtR~~~v~--~~~~~~~~~ 308 (897)
. ..+.+.+-++|+||+... . ....+...+.....+ +++|+||...... ........+
T Consensus 94 ---------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~-~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 94 ---------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKN-CSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred ---------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCC-ceEEEEcCChhhchHHHHhhceEE
Confidence 0 001134567899999643 1 122222222222333 7899988764321 111222457
Q ss_pred EcCCCChHHHHHHHHH
Q 036761 309 EVGCLSANDARELFRQ 324 (897)
Q Consensus 309 ~l~~L~~~e~~~lf~~ 324 (897)
.++..+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777888877766554
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.01 E-value=0.0001 Score=77.27 Aligned_cols=132 Identities=12% Similarity=0.071 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEK 257 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 257 (897)
-+.++|++|+||||+|+.++......+.....-++.++. .+ +...+... +.......+.+ . .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~-------~~~~~~~~~~~-a--~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH-------TAPKTKEILKR-A--M 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc-------chHHHHHHHHH-c--c
Confidence 588999999999999988876653222221112444442 12 22222111 11111122222 2 2
Q ss_pred ceEEEEeccccc-----------cccccccccCCCCCCCCcEEEEecCChhHhhhc--------CCCceEEcCCCChHHH
Q 036761 258 KFVLLLDDVWQR-----------VAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWM--------GAHKNFEVGCLSANDA 318 (897)
Q Consensus 258 ~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~ 318 (897)
.-+|+||++... ..+..+...+.....+ .+||+++......... .....+++++++.+|.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~-~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDD-LVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCC-EEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 358889999622 1122333333333333 6777777654321111 1135689999999999
Q ss_pred HHHHHHHhCC
Q 036761 319 RELFRQNVGE 328 (897)
Q Consensus 319 ~~lf~~~~~~ 328 (897)
.+++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 138
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.99 E-value=4e-05 Score=82.93 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
.++++.+..++.+...|.. .+.+.++|++|+|||++|+++++.......|+.+.||.+++..+..+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 4578889999999998864 46788899999999999999999886566788999999998887666554
No 139
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.99 E-value=0.00026 Score=72.36 Aligned_cols=190 Identities=14% Similarity=0.096 Sum_probs=113.0
Q ss_pred HHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC----CEEEEEEeCCcCCHHHHHHHHHHHhCCCCc
Q 036761 164 LDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF----DFLIWVVVSKDLQIEKIQEIIGKKVGLFND 236 (897)
Q Consensus 164 ~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 236 (897)
++++.+++.. ...+-+.|||.+|+|||++++++...+.....- -.++.|.....++...++..|+.+++.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3444444433 345679999999999999999999876532211 257778888899999999999999998753
Q ss_pred hhccccHHHHHHHHHHHhcc-CceEEEEecccccc-----ccccc---cccCCCCCCCCcEEEEecCChhHhhh-----c
Q 036761 237 SWMKKNLAERAVDIYNVLKE-KKFVLLLDDVWQRV-----AFTTV---GVPIPPRDKSASKVVFTTRSTEVCGW-----M 302 (897)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~-----~~~~~---~~~l~~~~~~~s~iivTtR~~~v~~~-----~ 302 (897)
...+...........++. +.-+||+|++.+.- .-..+ ...+.+.-.- +-|.+-|+...-+-. .
T Consensus 126 --~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i-piV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 126 --PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI-PIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred --CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC-CeEEeccHHHHHHhccCHHHH
Confidence 233444555555566654 34589999996521 11111 1112111222 556666665332211 1
Q ss_pred CCCceEEcCCCChHH-HHHHHHHHhCCC--ccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 303 GAHKNFEVGCLSAND-ARELFRQNVGEE--TLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e-~~~lf~~~~~~~--~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+...++.++....++ ...|+......- .....-...++++.|...++|+.=-+.
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 123456777776554 444544332110 011222346789999999999865443
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.96 E-value=0.00017 Score=75.50 Aligned_cols=133 Identities=11% Similarity=0.096 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
..+.++|++|+||||+|+.+++.....+.-...-|+.++. .++ ...+-.. +.......+.+ .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l----~~~~~g~-------~~~~~~~~l~~-a-- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDL----VGQYIGH-------TAPKTKEVLKK-A-- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHH----HHHHhcc-------chHHHHHHHHH-c--
Confidence 3588999999999999999987653221111112444442 122 2111111 11111112222 2
Q ss_pred CceEEEEeccccc-----------cccccccccCCCCCCCCcEEEEecCChhHhhh--------cCCCceEEcCCCChHH
Q 036761 257 KKFVLLLDDVWQR-----------VAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW--------MGAHKNFEVGCLSAND 317 (897)
Q Consensus 257 ~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e 317 (897)
..-+|++|++... .....+...+...... .+||+++....+... -.....+.+++++.+|
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~-~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDD-LVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCC-EEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 2348999999642 1122222333333333 778888765433211 1224578999999999
Q ss_pred HHHHHHHHhCC
Q 036761 318 ARELFRQNVGE 328 (897)
Q Consensus 318 ~~~lf~~~~~~ 328 (897)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99998887744
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=2.7e-05 Score=83.24 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=39.8
Q ss_pred cCCCcccEEEccCCCCCcccCccccCccCCCEeeccCC-CccccChhhhcCCcCcEecCCCCccccccCh
Q 036761 564 KSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGT-AIRELPKELNALENLQCLNLEETHFLITIPR 632 (897)
Q Consensus 564 ~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 632 (897)
..+++++.|++++| .++.+|. + -.+|+.|++++| .++.+|..+. .+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 34567777777777 6777762 1 235777777764 5666665553 5677777777754555554
No 142
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1.6e-06 Score=85.55 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=34.3
Q ss_pred cCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc---ccccCCCccEEEEecCchhhhh
Q 036761 728 LKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT---FLLFAPNLKSIEVSSCFAMEEI 794 (897)
Q Consensus 728 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~---~l~~l~~L~~L~L~~c~~l~~i 794 (897)
+|++..+-+..|+.-+. ........+|.+.-|+|+.+ ++.++. .+..+|.|..|.+++++..+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCcccch-hhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 46666666666643221 11111334556666666655 444432 3556677777777776554443
No 143
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=57.18 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=34.9
Q ss_pred CcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccC
Q 036761 567 PRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELP 607 (897)
Q Consensus 567 ~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp 607 (897)
++|++|++++| .++.+|..+++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 57999999999 89999988999999999999999999875
No 144
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00021 Score=81.61 Aligned_cols=191 Identities=12% Similarity=0.057 Sum_probs=106.6
Q ss_pred CCCccchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|-+..++.|..++..+..+ .+.++|+.|+||||+|+.+++..--...... ..++...+ .+.|...-..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~~~~~~ 88 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSIDNDNSL 88 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHHcCCCC
Confidence 57899999999999999876554 6889999999999999999887632111000 00000000 0111110000
Q ss_pred CC---chhccccHHHHHHHH---HH-HhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC-hhHhh-hc
Q 036761 234 FN---DSWMKKNLAERAVDI---YN-VLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS-TEVCG-WM 302 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l---~~-~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~-~~ 302 (897)
.. +.......++..... .. -..+++-++|+|++.. ...+..+...+...... +.+|++|.. ..+.. ..
T Consensus 89 dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~-~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 89 DVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPY-IVFIFATTEVHKLPATIK 167 (563)
T ss_pred CeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCC-EEEEEecCChHHhHHHHH
Confidence 00 000001122222111 11 1235666899999864 33455555444443344 666666544 33321 12
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
.....+++.+++.++....+.+.+......- -.+.+..|++.++|.+-.+.
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIKY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2345689999999999988888764332111 24567789999999875443
No 145
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00025 Score=78.97 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=93.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|+.|+|||+|++++++.......-..+++++. .++...+...+... ..+ .+.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-------KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CHH----HHHHHHH
Confidence 356899999999999999999998743221234566643 33344444444211 112 2233333
Q ss_pred cCceEEEEeccccccc---c-ccccccCCCC-CCCCcEEEEecCChh---------HhhhcCCCceEEcCCCChHHHHHH
Q 036761 256 EKKFVLLLDDVWQRVA---F-TTVGVPIPPR-DKSASKVVFTTRSTE---------VCGWMGAHKNFEVGCLSANDAREL 321 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~~---~-~~~~~~l~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 321 (897)
+ .-+|||||+..... + +.+...+... ..+ ..+|+|+.... +.+++.....+.+++.+.++-..+
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 3 34888999964211 1 1222111111 123 56788776521 223333445789999999999999
Q ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 322 FRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+.+.+......-+ +++...|++.+.|.+-.+.
T Consensus 277 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 277 LQKKAEEEGLELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 9998865432222 4668888888888766443
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=8.2e-05 Score=82.93 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=95.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|.+|+|||+|++.+++.......-..++|++. .++...+...+... .. ..+.+..+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~----~~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-------KL----NEFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cH----HHHHHHHH
Confidence 346999999999999999999998742221135666654 34555555554311 11 12333344
Q ss_pred cCceEEEEecccccc---cc-ccccccCCCC-CCCCcEEEEecC-Chh--------HhhhcCCCceEEcCCCChHHHHHH
Q 036761 256 EKKFVLLLDDVWQRV---AF-TTVGVPIPPR-DKSASKVVFTTR-STE--------VCGWMGAHKNFEVGCLSANDAREL 321 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~---~~-~~~~~~l~~~-~~~~s~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~e~~~l 321 (897)
.+.-+|++||+.... .+ ..+...+... ..+ ..||+||. .+. +.+++.....+.+++.+.+.-.++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 456689999996421 11 1221111111 123 56888875 322 123344455789999999999999
Q ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 322 FRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
+++.+......-+ +++..-|++.+.|..-.+
T Consensus 272 L~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 9988754332222 456888888888765443
No 147
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.90 E-value=9.3e-05 Score=81.35 Aligned_cols=171 Identities=18% Similarity=0.196 Sum_probs=95.2
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el--~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET--SATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh--CCCE---EEEecch-----
Confidence 3457899999988876631 234568899999999999999999976 3333 2221111
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 284 (897)
+ .... .......+...+.....+.+.+|+||+++.... +..+...+.. ...
T Consensus 253 -L----~~k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 -L----IQKY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred -h----hhhh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1 1111 111111122222233345678999999853210 0011111100 012
Q ss_pred CCcEEEEecCChhHhhh--c---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 285 SASKVVFTTRSTEVCGW--M---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
++.+||.||...+.... . .....+.++..+.++..++|..++..........+ ..++..+.|.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCC
Confidence 23688888887654221 1 22457899999999999999988754432223333 3444455443
No 148
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.0003 Score=80.76 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=104.1
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+..++.+.+++..+.. +.+.++|+.|+||||+|+.++...-....-+ +.+.+.-...+.|......
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~~~ 88 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGSLM 88 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCCCC
Confidence 6789999999999999987654 5677899999999999999987653111000 0011111111111111000
Q ss_pred CCchh---ccccHHHHHHHHHHH-----hccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhh-h
Q 036761 234 FNDSW---MKKNLAERAVDIYNV-----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG-W 301 (897)
Q Consensus 234 ~~~~~---~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~-~ 301 (897)
..-.. .....++. ..+.+. ..+++-++|+|++... ..+..+...+...... ..+|++| ....+.. .
T Consensus 89 dv~eidaas~~~vd~i-r~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~-~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 89 DVIEIDAASNNGVDEI-RDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH-VIFILATTEPHKIPATI 166 (559)
T ss_pred CeEEeeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC-eEEEEEeCChhhCcHHH
Confidence 00000 00111211 122222 1345668899999643 3444554444333333 4555444 4433321 1
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
......+++.+++.++....+...+.......+ .+....|++.++|.+..+
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 223456889999999999888887644331111 355778888888877543
No 149
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.86 E-value=0.00031 Score=76.81 Aligned_cols=172 Identities=16% Similarity=0.191 Sum_probs=96.3
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~------s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVG------S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEeh------H
Confidence 4568999988888776531 245678999999999999999999876 3332 22211 1
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc------------c----cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV------------A----FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~~ 284 (897)
.+ .... .......+...+.......+.+|++|+++... . +..+...+.. ...
T Consensus 214 ~l----~~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 EF----VQKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HH----HHHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 1111 01111122222223334578999999986321 0 1111111111 111
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.+..||+||...+... .. .-...+.++..+.++..++|+..........+.++ .++++.+.|.-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 2367888888654421 11 23456899999999988888877654332222333 45556665543
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00016 Score=83.35 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=104.9
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+..++.|.+.+..+.+ ..+.++|+.|+||||+|+.+++..--....+ ...++.-.....|...-..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c~~c~~c~~i~~g~~~ 88 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPCNVCPPCVEITEGRSV 88 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCCCccHHHHHHhcCCCC
Confidence 6789999999999999987765 4568999999999999999987753111100 0000000111111100000
Q ss_pred CC---chhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEec-CChhHhh-h
Q 036761 234 FN---DSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTT-RSTEVCG-W 301 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTt-R~~~v~~-~ 301 (897)
.. +.......++. ..+.+.+ .+++-++|+|++... .....+...+-..... +.+|++| ....+.. .
T Consensus 89 d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~-~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 89 DVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPH-VKFIFATTEPHKVPITI 166 (576)
T ss_pred CeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCC-eEEEEEeCChhhhhHHH
Confidence 00 00000111111 1222222 244558899999642 3344444444333333 5565544 4444432 2
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc-hHHHHHHh
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP-LALIITGR 360 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP-lai~~~~~ 360 (897)
......+++++++.++....+...+......- -.+....|++.++|.. .|+..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22345688999999999888887664332111 1355778889998865 44444433
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.85 E-value=0.00054 Score=67.77 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=40.9
Q ss_pred cCCCCCCccchHHHHHHHH----HhccCCceEEEEEcCCCCcHHHHHHHHHhcccC
Q 036761 151 ERPIEPTVGMQSQLDKVWS----CLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLG 202 (897)
Q Consensus 151 ~~~~~~~vGr~~~~~~l~~----~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 202 (897)
+.+.+.++|.|.+++.|.+ ++......-+.+||..|+|||++++++.+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3344678999999998875 333345667888999999999999999988743
No 152
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.85 E-value=0.0001 Score=88.04 Aligned_cols=154 Identities=16% Similarity=0.258 Sum_probs=90.3
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CC-CEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---DF-DFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
++++||+++++++++.|......-+.++|++|+|||++|+.+++...... .+ +..+|.. +...+ ...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l----~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL----LAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH----hhh
Confidence 57899999999999988776566677999999999999999998763211 11 3344421 11111 100
Q ss_pred hCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc----------cccc-ccccCCCCCCCCcEEEEecCChhH
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV----------AFTT-VGVPIPPRDKSASKVVFTTRSTEV 298 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------~~~~-~~~~l~~~~~~~s~iivTtR~~~v 298 (897)
.. .....++....+.+.+ +.++.+|++|++.... +... +...+ ..|.-++|-+|...+.
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEY 323 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHH
Confidence 00 1112233333333333 3467899999986321 1111 22222 2233566666654322
Q ss_pred h-------hhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 299 C-------GWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 299 ~-------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
. ........+.++.++.++..++++...
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 111223578999999999999998655
No 153
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=9.2e-07 Score=97.37 Aligned_cols=129 Identities=23% Similarity=0.267 Sum_probs=93.8
Q ss_pred cccccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCC
Q 036761 517 REWENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQ 594 (897)
Q Consensus 517 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~ 594 (897)
..|.++...+++.|.+..+.. +.-++.|+.|+|+ .|.+.+.. ++..+++|++|||++| .+..+|.- ...+ +|+
T Consensus 161 ~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLs-hNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLVLMDESLQLLPALESLNLS-HNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQ 235 (1096)
T ss_pred hhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccc-hhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hhe
Confidence 356778888888888776643 4557888999998 66666665 4788899999999998 67777742 2233 489
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
.|++++|.+++| .++.+|.+|+.||+++|-+...---..++.|..|+.|++.+|..
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999999988888 57888999999999988543321112267778888888887653
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00039 Score=74.09 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=60.3
Q ss_pred cCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChhH-h-hhcCCCceEEcCCCChHHHHHHHHHHhCCCcc
Q 036761 256 EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTEV-C-GWMGAHKNFEVGCLSANDARELFRQNVGEETL 331 (897)
Q Consensus 256 ~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 331 (897)
+++-++|+|+++. ......+...+-....+ +.+|+||.+... . ........+.+.+++.+++.+.+.+......
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~-~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~- 182 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGD-TVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD- 182 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCC-eEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC-
Confidence 3444567799974 34455554444443444 777777777543 2 2223345699999999999999887642111
Q ss_pred CCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 332 NGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+.+..++..++|.|..+..+
T Consensus 183 ------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999866544
No 155
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=3.4e-05 Score=82.54 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=63.2
Q ss_pred ccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEee
Q 036761 518 EWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLD 597 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 597 (897)
.+.++++|++++|.+..+|.++ ++|++|.+++|+.+..+|.. + .++|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 4567889999999888888543 46999999988888888864 3 36899999999977777875 467777
Q ss_pred ccCCC---ccccChhhh
Q 036761 598 LSGTA---IRELPKELN 611 (897)
Q Consensus 598 L~~~~---i~~lp~~i~ 611 (897)
++++. +..+|.++.
T Consensus 119 L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 119 IKGSATDSIKNVPNGLT 135 (426)
T ss_pred eCCCCCcccccCcchHh
Confidence 77654 567776543
No 156
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0017 Score=72.97 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=91.9
Q ss_pred CCCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
.+.+|.++-+++|+++|.- -+.+++++||++|+|||+|++.+++.. .+.| +-++++.-.|..+|-..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al--~Rkf---vR~sLGGvrDEAEIRGH-- 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL--GRKF---VRISLGGVRDEAEIRGH-- 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh--CCCE---EEEecCccccHHHhccc--
Confidence 4668999999999998842 245899999999999999999999987 4444 33445554454444211
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc---------ccccc---------ccccCCCCCCCCcEEE
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR---------VAFTT---------VGVPIPPRDKSASKVV 290 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---------~~~~~---------~~~~l~~~~~~~s~ii 290 (897)
..+....-+..+.+.+.+ .+.+.-+++||.++.. ..+-+ |.....+-...=|.|+
T Consensus 396 ------RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 396 ------RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred ------cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 111111111222222222 3446678999998632 11111 1111111111113443
Q ss_pred -Eec-CChh-H-hhhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 291 -FTT-RSTE-V-CGWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 291 -vTt-R~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
||| .+-+ + +..+....+|++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333 3333 2 2334455789999999999998888775
No 157
>PRK06620 hypothetical protein; Validated
Probab=97.81 E-value=8.1e-05 Score=74.28 Aligned_cols=133 Identities=12% Similarity=0.077 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~----------------------~-~-------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF----------------------N-E-------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh----------------------c-h-------hHH-h
Confidence 5689999999999999999877652 1 1111 0000 0 0 011 1
Q ss_pred CceEEEEeccccccc--cccccccCCCCCCCCcEEEEecCChh-------HhhhcCCCceEEcCCCChHHHHHHHHHHhC
Q 036761 257 KKFVLLLDDVWQRVA--FTTVGVPIPPRDKSASKVVFTTRSTE-------VCGWMGAHKNFEVGCLSANDARELFRQNVG 327 (897)
Q Consensus 257 ~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 327 (897)
..-++++||+....+ +-.+...+. ..| ..||+|++... ..+++.....+++++++.++-..++.+.+.
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g-~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQ-KYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcC-CEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 234788899963221 111111111 233 68999988543 234445556799999999998888888764
Q ss_pred CCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 328 EETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 328 ~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
......+ +++..-|++.+.|.--.+
T Consensus 162 ~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 3221222 456777777777654443
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.80 E-value=0.00012 Score=82.56 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|+.|+|||+|++.+++.......-..+++++.. ++...+...+... .. ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-------~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN-------TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-------cH----HHHHHHHh
Confidence 3568999999999999999999987432222345566543 3333444433211 11 22333343
Q ss_pred cCceEEEEecccccc----ccccccccCCCC-CCCCcEEEEecCChh---------HhhhcCCCceEEcCCCChHHHHHH
Q 036761 256 EKKFVLLLDDVWQRV----AFTTVGVPIPPR-DKSASKVVFTTRSTE---------VCGWMGAHKNFEVGCLSANDAREL 321 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~----~~~~~~~~l~~~-~~~~s~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 321 (897)
+.-+|||||+.... ..+.+...+... ..+ ..||+||.... +.+++.....+++++.+.++-..+
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 34489999996421 112222211111 122 45788776532 234444556799999999999999
Q ss_pred HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 322 FRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 322 f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
+++.+......-+ +++..-|++.+.|..-.+.
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHHH
Confidence 9998854321222 4568888888888766443
No 159
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.80 E-value=0.0012 Score=79.49 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=84.5
Q ss_pred CCCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
.+.+|.++.+++|.+++.. ...+++.++|++|+|||++|+.+++.. ...|-. +.++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l--~~~~~~---i~~~~~~~~~~i~g--- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL--NRKFVR---FSLGGVRDEAEIRG--- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCeEE---EeCCCcccHHHHcC---
Confidence 4578999999998886632 234589999999999999999999987 333322 22333223222211
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc---------cccccc-----cCCCC------CCCCcE
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA---------FTTVGV-----PIPPR------DKSASK 288 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---------~~~~~~-----~l~~~------~~~~s~ 288 (897)
............+...+..... ++-+++||+++.... +..+.. .|.+. ..++.-
T Consensus 392 -----~~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 392 -----HRRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred -----CCCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 1111111112223333333322 334789999864311 111110 11111 012144
Q ss_pred EEEecCChhH--hhhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 289 VVFTTRSTEV--CGWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 289 iivTtR~~~v--~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
+|.||..... .........+++.+++.++-.++++.+.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5556654322 1112233578999999988888886654
No 160
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.79 E-value=5.2e-06 Score=95.72 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=16.8
Q ss_pred Cccceeeehhccccccccc-hhhhcCCCcccEEEccC
Q 036761 541 CLHLLTLFLIFNEELEMIT-SDFFKSMPRLKVLNLSG 576 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~Ls~ 576 (897)
+++|+.|.+.++..+.... ..+...+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555444443321 12244455555555554
No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00074 Score=75.14 Aligned_cols=151 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
..+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+... . ...++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc-
Confidence 56889999999999999999998742 223345554 233444444444211 1 122333343
Q ss_pred CceEEEEeccccccc----cccccccCCCC-CCCCcEEEEecCCh---------hHhhhcCCCceEEcCCCChHHHHHHH
Q 036761 257 KKFVLLLDDVWQRVA----FTTVGVPIPPR-DKSASKVVFTTRST---------EVCGWMGAHKNFEVGCLSANDARELF 322 (897)
Q Consensus 257 ~~~LlVlDdv~~~~~----~~~~~~~l~~~-~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 322 (897)
..-+|++||+..... .+.+...+... ..+ ..||+||... .+.+++.....+.+.+++.++...++
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 345888899854221 11222111110 123 5688888652 22334444567899999999999999
Q ss_pred HHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 323 RQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.+++......-+ +++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988754332222 34556666666644
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.76 E-value=0.00011 Score=88.77 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=90.1
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CC-CEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---DF-DFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
.+++||+++++++++.|......-+.++|++|+|||++|+.++....... .. +..+|.- +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l------- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL------- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH-------
Confidence 56899999999999999876555667999999999999999988763211 11 3444421 11111
Q ss_pred hCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc---------ccccccccCCCCCCCCcEEEEecCChhHhh
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV---------AFTTVGVPIPPRDKSASKVVFTTRSTEVCG 300 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iivTtR~~~v~~ 300 (897)
+.... .....++....+.+.+ ..++.+|++|++.... +...+..+.. ..|.-++|.+|...+...
T Consensus 247 ~ag~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l--~rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 247 LAGTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL--ARGELQCIGATTLDEYRK 321 (821)
T ss_pred hccCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH--hCCCcEEEEeCCHHHHHH
Confidence 11111 1112233333333333 3567999999995321 1111221211 233356777776654321
Q ss_pred -------hcCCCceEEcCCCChHHHHHHHHHH
Q 036761 301 -------WMGAHKNFEVGCLSANDARELFRQN 325 (897)
Q Consensus 301 -------~~~~~~~~~l~~L~~~e~~~lf~~~ 325 (897)
......++.+...+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1123356888999999988888754
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00083 Score=76.05 Aligned_cols=158 Identities=15% Similarity=0.101 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
..+.|+|..|+|||.|++.+++.......-..+++++. .++..++...+.. .. ...+++.+++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhhc
Confidence 45899999999999999999998732212234556543 3344444433321 01 1223333333
Q ss_pred CceEEEEeccccc---cccc-cccccCCCCCCCCcEEEEecCCh---------hHhhhcCCCceEEcCCCChHHHHHHHH
Q 036761 257 KKFVLLLDDVWQR---VAFT-TVGVPIPPRDKSASKVVFTTRST---------EVCGWMGAHKNFEVGCLSANDARELFR 323 (897)
Q Consensus 257 ~~~LlVlDdv~~~---~~~~-~~~~~l~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf~ 323 (897)
.=+|||||+... ..|. .+...+......+..|||||+.. .+.+++...-.+.++..+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 347888999642 1221 22211111111125688888863 234555566789999999999999999
Q ss_pred HHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 324 QNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
+++.......+ ++++.-|++.+.+..-.+
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 98855432222 456777777776654433
No 164
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.001 Score=70.57 Aligned_cols=195 Identities=15% Similarity=0.158 Sum_probs=109.5
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC-------------CCCEEEEEEeCCcCCH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG-------------DFDFLIWVVVSKDLQI 220 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------~f~~~~wv~~~~~~~~ 220 (897)
.+++|.+..++.+.+.+..+.+ +...++|+.|+||+++|..+++..--.. ...-..|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4679999999999999988764 7999999999999999988876652111 1112233322100000
Q ss_pred HHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc-----cCceEEEEecccc--ccccccccccCCCCCCCCcEEEEec
Q 036761 221 EKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK-----EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTT 293 (897)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTt 293 (897)
..+-.+-++..+...........++ ++.+.+++. +.+-++|+|+++. ......+...+-... . +.+|++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~ 160 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIA 160 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEE
Confidence 0000111111111000001111222 233444443 4566899999864 334444444444434 3 4555555
Q ss_pred CCh-hHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 294 RST-EVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 294 R~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+. .+. ........+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 443 332 2223356799999999999999988753221 1111367889999999766543
No 165
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.72 E-value=0.00025 Score=73.27 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=104.4
Q ss_pred CCCccchHHHHHHHHHhccCC---ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQLDKVWSCLVEEP---VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
+.+-+|+.++..+..++.+.. ...|.|+|..|+|||.+.+++.+.. . -..+|+++-..++.+..+..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHh
Confidence 456799999999999887642 3456899999999999999999887 2 2368999999999999999999998
Q ss_pred CC-CCchhc-c---ccHHHHHHHHHH--Hhc--cCceEEEEecccccccccccc--------ccCCCCCCCCcEEEEecC
Q 036761 232 GL-FNDSWM-K---KNLAERAVDIYN--VLK--EKKFVLLLDDVWQRVAFTTVG--------VPIPPRDKSASKVVFTTR 294 (897)
Q Consensus 232 ~~-~~~~~~-~---~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~~~~~~--------~~l~~~~~~~s~iivTtR 294 (897)
+. +.+... . .+.......+.+ ... ++.++||||+++...+.+... ..++. . .-+|+++-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~---~-~i~iils~ 156 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE---P-TIVIILSA 156 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC---C-ceEEEEec
Confidence 52 221111 1 112222233333 222 458999999997654443321 11111 1 22333333
Q ss_pred Ch--hH-hhhcCCCc--eEEcCCCChHHHHHHHHHHh
Q 036761 295 ST--EV-CGWMGAHK--NFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 295 ~~--~v-~~~~~~~~--~~~l~~L~~~e~~~lf~~~~ 326 (897)
.. .. ...+++.. ++..+..+.+|...++.+.-
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22 11 11134433 45778889999988886643
No 166
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.72 E-value=5.8e-06 Score=72.27 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=76.2
Q ss_pred Eeecccccccccc----cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeecc
Q 036761 524 RFSLMETQIRTLS----AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLS 599 (897)
Q Consensus 524 ~L~l~~~~~~~l~----~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 599 (897)
.++++++.+..++ .+.....|...+|+ +|.+.++|..+-..++.+..|+|++| .+..+|..+..++.|+.|+++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecc-cchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 3445555444333 23556667777777 67777788776667777888888888 777788778888888888888
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccChh
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPRQ 633 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 633 (897)
.|.+...|.-+..|.+|-.|+..+|.. ..+|..
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence 888888887777788888888777763 556654
No 167
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00099 Score=68.55 Aligned_cols=193 Identities=17% Similarity=0.218 Sum_probs=113.7
Q ss_pred CccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHH
Q 036761 157 TVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKI 223 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (897)
+=|-++.+++|.+...- +..+-|.+||++|+|||-||++|+++- .-.| +.+...
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T--~AtF-----IrvvgS------ 219 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT--DATF-----IRVVGS------ 219 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CceE-----EEeccH------
Confidence 34789999999887642 356788999999999999999999987 3333 222221
Q ss_pred HHHHHHHhCCCCchhccccHHHHHHHHHHHhcc-CceEEEEecccccc----------------cccccc---ccCCCCC
Q 036761 224 QEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE-KKFVLLLDDVWQRV----------------AFTTVG---VPIPPRD 283 (897)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~----------------~~~~~~---~~l~~~~ 283 (897)
++.+..-.. -..++..+.+..+. .+..|.+|.++... ..-++. .-|. .
T Consensus 220 --ElVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD--~ 287 (406)
T COG1222 220 --ELVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD--P 287 (406)
T ss_pred --HHHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC--C
Confidence 122221111 13455556666655 47889999985320 011111 1122 2
Q ss_pred CCCcEEEEecCChhHhh-----hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc----hH
Q 036761 284 KSASKVVFTTRSTEVCG-----WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP----LA 354 (897)
Q Consensus 284 ~~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP----la 354 (897)
.++.|||..|...++.. --.-+..|+++.-+.+.-.++|+-++..-....+-++ +.+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHH
Confidence 34489999998877632 1123456888866666667888888866554444555 44555565543 34
Q ss_pred HHHHHhhhhcC--C---ChHHHHHHHHHH
Q 036761 355 LIITGRAMACK--K---TPEEWRDAIKVL 378 (897)
Q Consensus 355 i~~~~~~l~~~--~---~~~~w~~~~~~l 378 (897)
+.+=|++++-+ + +.+++..+.+..
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 55555555422 2 445555555443
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=3e-05 Score=90.35 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=82.8
Q ss_pred Cccceeeehhcccccc-ccchhhhcCCCcccEEEccCCCCC-cccCccccCccCCCEeeccCCCccccChhhhcCCcCcE
Q 036761 541 CLHLLTLFLIFNEELE-MITSDFFKSMPRLKVLNLSGARRM-SSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQC 618 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~~-~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 618 (897)
-.+|+.|+++|...+. ..|.....-||.|+.|.+++-... .++..-..+++||..||+|+++++.+ .++++|+||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3567888887543322 233344455788888888875221 12233345678888888888888888 77888888888
Q ss_pred ecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcc
Q 036761 619 LNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQ 691 (897)
Q Consensus 619 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 691 (897)
|.+.+-.+...---..+-+|++|+.|+++........ .-.....+.-..||+|+.|+.+++.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~---------~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT---------KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch---------HHHHHHHHhcccCccccEEecCCcchh
Confidence 8877655422111111567888888888775432210 000001222234677777777766553
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00039 Score=84.11 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=89.4
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCE-EEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD----FDF-LIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~-~~wv~~~~~~~~~~~~~~i~~ 229 (897)
++++||+.++.++++.|......-+.++|++|+|||++|+.++........ ... ++++..+. +. .
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~----a 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV----A 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hh----h
Confidence 578999999999999998766667779999999999999999987632110 122 22332221 10 0
Q ss_pred HhCCCCchhccccHHHHHHHHHHHh--ccCceEEEEecccccc---------ccccccccCCCCCCCCcEEEEecCChhH
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVL--KEKKFVLLLDDVWQRV---------AFTTVGVPIPPRDKSASKVVFTTRSTEV 298 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iivTtR~~~v 298 (897)
+. . .....++....+...+ .+.+.+|++|++.... +...+..+.. ..|.-++|-+|...+.
T Consensus 248 --g~---~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 --GA---K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEY 319 (857)
T ss_pred --cc---c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHH
Confidence 00 0 1111222222222222 2468999999996431 1112222222 2344677777766553
Q ss_pred hh-------hcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 299 CG-------WMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 299 ~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
.. .......+.+...+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 11 11123357777779999999887654
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.64 E-value=0.00057 Score=83.06 Aligned_cols=155 Identities=16% Similarity=0.214 Sum_probs=90.2
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD----FDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
+++|||++++.++++.|......-+.++|++|+|||++|+.++.+...... ....+|.. +...+. .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h-
Confidence 568999999999999997766666679999999999999999887632111 12233321 111110 0
Q ss_pred hCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc---------ccccccccCCCCCCCCcEEEEecCChhHh
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV---------AFTTVGVPIPPRDKSASKVVFTTRSTEVC 299 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~~s~iivTtR~~~v~ 299 (897)
+.. .....+.....+...+. +++.+|++|++.... +...+..+. ...|.-++|.+|...+.-
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~--l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPA--LARGELHCIGATTLDEYR 315 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchh--hhcCceEEEEeCcHHHHH
Confidence 000 11122223333333332 468999999996421 111122222 223335677666655431
Q ss_pred h-------hcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 300 G-------WMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 300 ~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
. .......+.++..+.++...++....
T Consensus 316 ~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 316 KYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 11223568899999999999987764
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0018 Score=68.34 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=95.9
Q ss_pred HHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCCCCE-----EEEEEeCCcCCHHHHHHHHHHHhCCCC
Q 036761 162 SQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDF-----LIWVVVSKDLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 162 ~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (897)
...+.+.+.+..+.++ .+.++|+.|+||+++|..+++..--.....+ .-|+..+..+|...+. ..+.
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p~ 83 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIPN 83 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-------cCCC
Confidence 4456677777666654 6899999999999999988776532111100 0000001111100000 0000
Q ss_pred chh----ccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hh-hhc
Q 036761 236 DSW----MKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWM 302 (897)
Q Consensus 236 ~~~----~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~ 302 (897)
... .....++ +..+.+.+ .+++-++|+|+++.. ..-..+...+-....+ +.+|++|.+.+ +. ...
T Consensus 84 ~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 84 RTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG-RYLWLISAQPARLPATIR 161 (319)
T ss_pred cccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC-CeEEEEECChhhCchHHH
Confidence 000 0011222 22233333 245568999999742 3333343334343344 77777776543 32 222
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
.....+.+.+++.+++.+.+.+. +.. ...+..++..++|.|+.+..+.
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~-~~~--------~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQ-GVS--------ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHc-CCC--------hHHHHHHHHHcCCCHHHHHHHh
Confidence 33456899999999999888754 211 1226678999999998765443
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00064 Score=80.22 Aligned_cols=155 Identities=16% Similarity=0.248 Sum_probs=91.3
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC-C---CCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG-D---FDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~---f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
.+++||+++++++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +...+ +
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----l-- 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----L-- 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----h--
Confidence 46799999999999988775555667899999999999999987652211 1 24455421 11111 1
Q ss_pred hCCCCchhccccHHHHHHHHHHHh-ccCceEEEEeccccc----------cccccccccCCCCCCCCcEEEEecCChhHh
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQR----------VAFTTVGVPIPPRDKSASKVVFTTRSTEVC 299 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~~s~iivTtR~~~v~ 299 (897)
.... .....+.....+...+ +..+.+|++|++... .+...+..++.. .|.-++|-+|...+..
T Consensus 255 -aG~~---~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 255 -AGTK---YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFS 328 (758)
T ss_pred -cccc---hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHH
Confidence 0000 1112233333333333 345789999999632 111112222222 2335677666655431
Q ss_pred h-------hcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 300 G-------WMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 300 ~-------~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
. ..+....+.++.++.+++.+++....
T Consensus 329 ~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 11223579999999999999998764
No 173
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0052 Score=60.63 Aligned_cols=184 Identities=15% Similarity=0.145 Sum_probs=105.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe-CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV-SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
++-+++.++|.-|+|||.+++....... + +.++-+.+ .+..+...+...|+..+..........-.++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~--~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN--E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC--C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 5667999999999999999996655442 1 22222333 34457778888888888763211111122333344444
Q ss_pred Hh-ccCc-eEEEEeccccc--ccccccccc--CCCCCCCCcEEEEecCC--------hhHhhhcCCCce-EEcCCCChHH
Q 036761 253 VL-KEKK-FVLLLDDVWQR--VAFTTVGVP--IPPRDKSASKVVFTTRS--------TEVCGWMGAHKN-FEVGCLSAND 317 (897)
Q Consensus 253 ~l-~~~~-~LlVlDdv~~~--~~~~~~~~~--l~~~~~~~s~iivTtR~--------~~v~~~~~~~~~-~~l~~L~~~e 317 (897)
.. +++| ..+++||..+. ...+.++.. +.....+.-+|+..-.. ......-..... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4566 89999998642 222222111 11111110123322221 111111111223 8999999999
Q ss_pred HHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhh
Q 036761 318 ARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRA 361 (897)
Q Consensus 318 ~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 361 (897)
...+++.+..+.....+---.+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99999988765431222222566788999999999999877643
No 174
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.56 E-value=0.0015 Score=74.78 Aligned_cols=171 Identities=13% Similarity=0.097 Sum_probs=93.3
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ...| +.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~~-----~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVPF-----FSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCe-----eeccH----HH
Confidence 456888877766654432 1 123468899999999999999999876 2222 22221 11
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc------------ccc----cccccCCC-CCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV------------AFT----TVGVPIPP-RDKS 285 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~~~----~~~~~l~~-~~~~ 285 (897)
+.. .. .......+...+.......+.+|++||++... .+. .+...+.. ...+
T Consensus 124 ~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 124 FVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11 01122223333334444567899999995421 011 11111110 1122
Q ss_pred CcEEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 286 ASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 286 ~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
+..||.||..... .+...-+..+.++..+.++-.++|+.++......... ....+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCC
Confidence 2567777766542 1111234578999999999999998877543212111 245777777764
No 175
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.55 E-value=8.5e-05 Score=69.82 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=55.9
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc--cccCccCCCEeec
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL--GISVLVSLQHLDL 598 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~--~i~~L~~L~~L~L 598 (897)
....+++++|++..++.++.++.|.+|.+. +|.|..+.+..-.-+++|..|.|.+| .+..+.+ .+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 344566666666666666666666666666 66666666654445556666666666 4443321 2344556666666
Q ss_pred cCCCccccCh----hhhcCCcCcEecCCC
Q 036761 599 SGTAIRELPK----ELNALENLQCLNLEE 623 (897)
Q Consensus 599 ~~~~i~~lp~----~i~~L~~L~~L~L~~ 623 (897)
-+|.++..+. -+..+++|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555543332 134455555555443
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0014 Score=70.30 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=85.3
Q ss_pred CCcc-chHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC--------------------CCCEEEEEE
Q 036761 156 PTVG-MQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG--------------------DFDFLIWVV 213 (897)
Q Consensus 156 ~~vG-r~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 213 (897)
.++| .+..++.+.+.+..+.+ ....++|+.|+||||+|+.+++..--.. |.|......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 4566 77778888888877655 4669999999999999999877653111 112111110
Q ss_pred eCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH-----hccCceEEEEeccccc--cccccccccCCCCCCCC
Q 036761 214 VSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV-----LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSA 286 (897)
Q Consensus 214 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 286 (897)
.+. ....+++.+ +.+. ..+.+=++|+|+++.. .....+...+......
T Consensus 86 ~~~-----------------------~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~- 140 (329)
T PRK08058 86 DGQ-----------------------SIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG- 140 (329)
T ss_pred ccc-----------------------cCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC-
Confidence 011 111222222 2222 2244557899998642 3344444444444444
Q ss_pred cEEEEecCChh-Hhh-hcCCCceEEcCCCChHHHHHHHHHH
Q 036761 287 SKVVFTTRSTE-VCG-WMGAHKNFEVGCLSANDARELFRQN 325 (897)
Q Consensus 287 s~iivTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~ 325 (897)
+.+|++|.+.. +.. .......+++.+++.++..+.+.+.
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 77777776643 222 2233567999999999998888654
No 177
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=0.00028 Score=64.88 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|.|+|++|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999987
No 178
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0029 Score=70.82 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=90.7
Q ss_pred CCCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
++-+|.++-+++|++++.- -+.++++.+|++|+|||++|+.++... .+.| +-++++.-.|..+|-..=
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL--nRkF---fRfSvGG~tDvAeIkGHR- 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL--NRKF---FRFSVGGMTDVAEIKGHR- 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--CCce---EEEeccccccHHhhcccc-
Confidence 5679999999999998742 256899999999999999999999887 3443 335666666665553211
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc---------ccccc---------cccCCCCCCCCcEEE
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---------AFTTV---------GVPIPPRDKSASKVV 290 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~~~~~---------~~~l~~~~~~~s~ii 290 (897)
......-+..+++.|... +-..-|+.+|.|+... .+-++ ...+.+-.-.=|+|+
T Consensus 485 -------RTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVL 556 (906)
T KOG2004|consen 485 -------RTYVGAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVL 556 (906)
T ss_pred -------eeeeccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheE
Confidence 111111122233333322 2345688889986321 11111 111111111126665
Q ss_pred EecCChhHh----hhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 291 FTTRSTEVC----GWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 291 vTtR~~~v~----~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
+...-..+. ........|++.+...+|-..+-.++.
T Consensus 557 FicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 557 FICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 432221221 112234678999999988877776664
No 179
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=6e-05 Score=87.88 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=90.8
Q ss_pred ccceEeeccccccccccc----ccCCccceeeehhcccccccc-chhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 520 ENARRFSLMETQIRTLSA----VPTCLHLLTLFLIFNEELEMI-TSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~l~~l-~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
.++++|++.+...-.-.+ ...+|.|++|.+. +..+..- -...+.++++|+.||+|++ +++.+ .++++|+||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEec-CceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 478999998754321111 2468999999998 4333211 1234678999999999999 88888 5899999999
Q ss_pred EeeccCCCccccC--hhhhcCCcCcEecCCCCccccccCh---h---hhhcCCccceeeccccCC
Q 036761 595 HLDLSGTAIRELP--KELNALENLQCLNLEETHFLITIPR---Q---LISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 595 ~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~---~~~~l~~L~~L~l~~~~~ 651 (897)
.|.+.+=.+..-+ ..+.+|++|++||+|...... .+. . .-..|++|+.|+.+++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 9999887766433 357789999999999876422 221 1 123588999999987653
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.001 Score=71.56 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=83.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC--EEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD--FLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
....+.|||..|.|||.|++++.+... .... .+++++ .......++..+.. .-...+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~--~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL--ANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH--hhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHHH
Confidence 467999999999999999999999884 3333 344432 23333444333321 12334455
Q ss_pred HhccCceEEEEecccccc---cc-ccccccCCCCCCCCcEEEEecCCh---------hHhhhcCCCceEEcCCCChHHHH
Q 036761 253 VLKEKKFVLLLDDVWQRV---AF-TTVGVPIPPRDKSASKVVFTTRST---------EVCGWMGAHKNFEVGCLSANDAR 319 (897)
Q Consensus 253 ~l~~~~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~~s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~ 319 (897)
.. .-=++++||++-.. .| +.+...|..-...|-.||+|++.. .+.+++...-.+++.+.+.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 55 33488899996421 12 222222221111224799999763 33555666778999999999999
Q ss_pred HHHHHHhCCCc
Q 036761 320 ELFRQNVGEET 330 (897)
Q Consensus 320 ~lf~~~~~~~~ 330 (897)
..+.+++....
T Consensus 251 aiL~kka~~~~ 261 (408)
T COG0593 251 AILRKKAEDRG 261 (408)
T ss_pred HHHHHHHHhcC
Confidence 99999775544
No 181
>PRK08116 hypothetical protein; Validated
Probab=97.52 E-value=0.00015 Score=75.12 Aligned_cols=103 Identities=22% Similarity=0.229 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
..+.|+|..|+|||+||.++++....+ ...+++++ ..+++..+........ ..+. ..+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~----~~~~----~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG----KEDE----NEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc----cccH----HHHHHHhcC
Confidence 458899999999999999999987432 34456665 3445555544433211 1111 223344444
Q ss_pred CceEEEEecccc--cccccc--ccccCCCCCCCCcEEEEecCCh
Q 036761 257 KKFVLLLDDVWQ--RVAFTT--VGVPIPPRDKSASKVVFTTRST 296 (897)
Q Consensus 257 ~~~LlVlDdv~~--~~~~~~--~~~~l~~~~~~~s~iivTtR~~ 296 (897)
-. ||||||+.. ..+|.. +...+......+..+||||...
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44 899999942 333322 2222221111125689998753
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.0041 Score=65.73 Aligned_cols=176 Identities=7% Similarity=-0.007 Sum_probs=95.2
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC-----CCc
Q 036761 163 QLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL-----FND 236 (897)
Q Consensus 163 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~ 236 (897)
..+.+.+.+..+.+ ..+.++|+.|+||+++|+.++...--..... ....+.-...+.+...-.. ...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34566666666554 5777999999999999999877653111110 0000000111111100000 000
Q ss_pred hhccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChh-Hh-hhcCCCce
Q 036761 237 SWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWMGAHKN 307 (897)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~~~~~~ 307 (897)
.......++. +.+.+.+ .+++=++|+|+++. ......+...+-..... +.+|++|.+.+ +. ........
T Consensus 83 ~~~~I~id~i-R~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~-~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 83 DNKDIGVDQV-REINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPN-TYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cCCCCCHHHH-HHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCC-eEEEEEECChHhCchHHHhhceE
Confidence 0001122222 2233333 24556888999975 33445554445444444 77777777653 32 22233467
Q ss_pred EEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 308 FEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 308 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
+.+.+++.++..+.+.+..... ...+...+..++|.|..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 9999999999998888764321 112566788899999644
No 183
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.00089 Score=74.87 Aligned_cols=162 Identities=12% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CCCEEEEEEeCCcC
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---DFDFLIWVVVSKDL 218 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~~~~~ 218 (897)
.++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++...... .+....++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4557899999988876531 2345689999999999999999999873211 1223444444321
Q ss_pred CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc---------cc-----ccccccCCCC-
Q 036761 219 QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV---------AF-----TTVGVPIPPR- 282 (897)
Q Consensus 219 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~---------~~-----~~~~~~l~~~- 282 (897)
+ ++...... .......+....+... .+++.+|+||+++... +. ..+...+...
T Consensus 261 ---e----Ll~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 261 ---E----LLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred ---h----hcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 1 11100000 0001111222222221 3478999999996421 11 1121111111
Q ss_pred CCCCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCC
Q 036761 283 DKSASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGE 328 (897)
Q Consensus 283 ~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 328 (897)
..++..||.||...+... .. .-+..|+++..+.++..++|+.+...
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 112256677776654311 11 23456899999999999999998753
No 184
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.45 E-value=0.0022 Score=76.51 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=86.7
Q ss_pred CCCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++... ...|- -+..+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l--~~~~~---~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT--GRKYV---RMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh--CCCEE---EEEcCCCCCHHHhccchh
Confidence 4579999999999988752 245689999999999999999999866 33332 233343333332221110
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc------cccccccCCC--------------CCCCCcE
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA------FTTVGVPIPP--------------RDKSASK 288 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~--------------~~~~~s~ 288 (897)
...+ .....+...+... ....-+++||.++.... ...+...+.. ..-++.-
T Consensus 397 ~~~g--------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIG--------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCC--------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 0011 1111222233222 22334788999863211 0111111100 0112255
Q ss_pred EEEecCChhHhh-hcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 289 VVFTTRSTEVCG-WMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 289 iivTtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
+|.|+....+.. ..+...++++.+++.+|-.++.+++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 566665543311 12223578999999999888887765
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00042 Score=64.57 Aligned_cols=89 Identities=20% Similarity=0.065 Sum_probs=49.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
...+.|+|++|+||||+|+.++..... ....++++..+........... ........ ...........+....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALAR 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHHH
Confidence 357899999999999999999988742 2234555555443322222111 00011000 11222233334444444
Q ss_pred cC-ceEEEEecccccc
Q 036761 256 EK-KFVLLLDDVWQRV 270 (897)
Q Consensus 256 ~~-~~LlVlDdv~~~~ 270 (897)
.. ..++++|++....
T Consensus 76 ~~~~~viiiDei~~~~ 91 (148)
T smart00382 76 KLKPDVLILDEITSLL 91 (148)
T ss_pred hcCCCEEEEECCcccC
Confidence 44 4899999997643
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.42 E-value=0.00062 Score=78.20 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=39.9
Q ss_pred CCCCccchHHHHHHHHHhccC-----CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 154 IEPTVGMQSQLDKVWSCLVEE-----PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~-----~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++++|.++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999988652 34579999999999999999999865
No 187
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=4.5e-05 Score=66.84 Aligned_cols=88 Identities=25% Similarity=0.321 Sum_probs=78.0
Q ss_pred cceEeeccccccccccc-c-cCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeec
Q 036761 521 NARRFSLMETQIRTLSA-V-PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDL 598 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~-~-~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 598 (897)
++..+++++|.+..+|. + .+++.+++|++. +|.+.++|.. +..|+.||.|+++.| .+...|..|..|.+|-+|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 56778899999998875 2 567789999999 8999999999 899999999999999 88888999999999999999
Q ss_pred cCCCccccChhhh
Q 036761 599 SGTAIRELPKELN 611 (897)
Q Consensus 599 ~~~~i~~lp~~i~ 611 (897)
.+|.+.++|-.+-
T Consensus 131 ~~na~~eid~dl~ 143 (177)
T KOG4579|consen 131 PENARAEIDVDLF 143 (177)
T ss_pred CCCccccCcHHHh
Confidence 9999999987743
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00068 Score=67.70 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV 214 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 214 (897)
-.++|+|..|+|||||+..+.... ...|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~--~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL--RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh--cccCCEEEEEec
Confidence 367799999999999999998877 678888877754
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.40 E-value=0.0045 Score=69.36 Aligned_cols=196 Identities=14% Similarity=0.072 Sum_probs=117.1
Q ss_pred CCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccC------CCCCCEEEEEEeCCcCCHHHHH
Q 036761 156 PTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLG------QGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~------~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
.+=+||.+..+|.+++.. +..+.+.|.|-+|+|||..+..|.+.... ...|+ .+.|+.-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 345899999999887753 34559999999999999999999885531 22343 3345555666799999
Q ss_pred HHHHHHhCCCCchhccccHHHHHHHHHHHhc-----cCceEEEEeccccccc--cccccccCCCCCCCCcEEEEecCCh-
Q 036761 225 EIIGKKVGLFNDSWMKKNLAERAVDIYNVLK-----EKKFVLLLDDVWQRVA--FTTVGVPIPPRDKSASKVVFTTRST- 296 (897)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~~~~--~~~~~~~l~~~~~~~s~iivTtR~~- 296 (897)
..|..++..... ....-...|..++. .+..++++|+++.... .+-+...|.+....+||++|.+=..
T Consensus 476 ~~I~~~lsg~~~-----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 476 EKIWEALSGERV-----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHhcccCcc-----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 999999987542 23334444444443 3568999999854211 1111222323233337766544321
Q ss_pred ----------hHhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 297 ----------EVCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 297 ----------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+++.++- ..+..++.+.++-.+....+..+...-...-.+=++++|+.-.|..-.|+.+.
T Consensus 551 mdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred ccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 12233322 34788888888888888777644321122223334555555555544444443
No 190
>CHL00176 ftsH cell division protein; Validated
Probab=97.40 E-value=0.0024 Score=74.02 Aligned_cols=169 Identities=12% Similarity=0.119 Sum_probs=95.4
Q ss_pred CCCccchHHHHHHHHH---hccC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSC---LVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.++.++++.+. +... ..+-|.++|++|+|||+||+.+++... .. ++.++. .+
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~--~p-----~i~is~----s~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE--VP-----FFSISG----SE 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC-----eeeccH----HH
Confidence 4578887776665544 3321 245689999999999999999998762 22 222221 11
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc------------c----cccccccCC--CCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV------------A----FTTVGVPIP--PRDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------------~----~~~~~~~l~--~~~~ 284 (897)
+.. .. .......+...+.......+.+|++||++... . +..+...+. ....
T Consensus 252 f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 252 FVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 110 00 01111223333444455678999999995321 1 111111111 1122
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS 350 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g 350 (897)
+ ..||.||...+... .. .-+..+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 321 ~-ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G 386 (638)
T CHL00176 321 G-VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPG 386 (638)
T ss_pred C-eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCC
Confidence 3 56777777754421 11 224578899999999999999887543211 12235677777777
No 191
>PRK10536 hypothetical protein; Provisional
Probab=97.38 E-value=0.00054 Score=68.69 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEE
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIW 211 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w 211 (897)
..+.+|......++.++.+ ..+|.+.|++|+|||+||.++..+.-..+.|+.++-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 4567888888889888865 359999999999999999998875322344554443
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=0.00035 Score=66.80 Aligned_cols=35 Identities=37% Similarity=0.546 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCC-CCCCEEEE
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQ-GDFDFLIW 211 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 211 (897)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468999999999999999999987543 56777776
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.36 E-value=0.003 Score=69.48 Aligned_cols=136 Identities=21% Similarity=0.183 Sum_probs=85.0
Q ss_pred chHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhc
Q 036761 160 MQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWM 239 (897)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (897)
|..-+.++.+.+..... ++.|.|+-++||||+++.+..... .. .+++..-+......-.
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~--~~---~iy~~~~d~~~~~~~l--------------- 80 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL--EE---IIYINFDDLRLDRIEL--------------- 80 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC--cc---eEEEEecchhcchhhH---------------
Confidence 44555666666544333 999999999999999977776652 22 5555433321111100
Q ss_pred cccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHh-----hh-cCCCceEEcCCC
Q 036761 240 KKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVC-----GW-MGAHKNFEVGCL 313 (897)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~-----~~-~~~~~~~~l~~L 313 (897)
.+....+...-..++..++||.|....+|......+.+.... +|++|+-+.... .. .+....+++.||
T Consensus 81 ----~d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 81 ----LDLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred ----HHHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 111111111112277899999999999999887777665543 788888876542 11 233557899999
Q ss_pred ChHHHHHHH
Q 036761 314 SANDARELF 322 (897)
Q Consensus 314 ~~~e~~~lf 322 (897)
|..|...+-
T Consensus 155 SF~Efl~~~ 163 (398)
T COG1373 155 SFREFLKLK 163 (398)
T ss_pred CHHHHHhhc
Confidence 999887654
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.34 E-value=0.0016 Score=61.95 Aligned_cols=136 Identities=15% Similarity=0.145 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHhccCCce-EEEEEcCCCCcHHHHHHHHHhcccCCCC------------------CCEEEEEEeCCc--
Q 036761 159 GMQSQLDKVWSCLVEEPVG-IVGLYGMGGVGKTTLLTHLHNKFLGQGD------------------FDFLIWVVVSKD-- 217 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------f~~~~wv~~~~~-- 217 (897)
|-++.++.|.+.+..+..+ .+.++|+.|+||+|+|..+++..--... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5677788888888777655 6899999999999999998776532221 112233322221
Q ss_pred -CCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecC
Q 036761 218 -LQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTR 294 (897)
Q Consensus 218 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR 294 (897)
..++++. .+...+.... ..+++=++|+||++. ......+...+-..... +++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~-~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPEN-TYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTT-EEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCC-EEEEEEEC
Confidence 2222222 2222222111 123566899999975 34455555444444444 88998888
Q ss_pred ChhH--hhhcCCCceEEcCCCC
Q 036761 295 STEV--CGWMGAHKNFEVGCLS 314 (897)
Q Consensus 295 ~~~v--~~~~~~~~~~~l~~L~ 314 (897)
+..- .........+.+.++|
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 8653 2222334456666653
No 195
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.33 E-value=4.4e-05 Score=74.70 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=50.7
Q ss_pred CCCCCCEEEEEeCCcccHHHH--HhchhccccceeEEEeccCCC----cccccccccccCCCCceeeeecCCccE--EEe
Q 036761 676 GLEHLEVLSLTLNNFQDLQCV--LKSKELRRCTQALYLYSFKRS----EPLDVSALAGLKHLNRLWIHECEELEE--LEM 747 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~l~~--l~~ 747 (897)
+-|.|+......|.+.+.+.. .........|+.+.+..|... +.+....+..+.+|+.|+|.+|..... ...
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 345666666666655433221 111122235555555555421 111122344566777777776632210 000
Q ss_pred cccCcCCCCccEEEEeCCCCCCCCc---c---c--ccCCCccEEEEecCc
Q 036761 748 ARQPFDFRSLKKIQIYGCHRLKDLT---F---L--LFAPNLKSIEVSSCF 789 (897)
Q Consensus 748 ~~~~~~l~~L~~L~L~~c~~l~~l~---~---l--~~l~~L~~L~L~~c~ 789 (897)
.......+.|+.|.+..| .++.-. . + ...|+|..|...++.
T Consensus 235 a~al~~W~~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 235 ADALCEWNLLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HHHhcccchhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 000223455777777777 333211 0 1 134666666666543
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.008 Score=63.42 Aligned_cols=162 Identities=12% Similarity=0.063 Sum_probs=94.4
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEeCCcCCHHH
Q 036761 163 QLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 163 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~~~~~~~~~ 222 (897)
..+++.+.+..+.+ ..+.++|+.|+||+++|+.++...--.. |.| ..|+.-...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~----- 84 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE----- 84 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC-----
Confidence 44566666655554 5789999999999999999876542111 111 111111000
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRS 295 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~ 295 (897)
......+++ +.+.+.+ .+.+=++|+|+++. ......+...+-....+ +.+|++|.+
T Consensus 85 ---------------~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~ 147 (319)
T PRK06090 85 ---------------GKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPN-CLFLLVTHN 147 (319)
T ss_pred ---------------CCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCC-eEEEEEECC
Confidence 001122222 2233333 23455888999974 34455555545444444 667766665
Q ss_pred hh-Hh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 296 TE-VC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 296 ~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+ +. ........+.+.+++.+++.+.+.+.. . . .+..+++.++|.|+.+..+
T Consensus 148 ~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-~---~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 148 QKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-I---T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-C---c-------hHHHHHHHcCCCHHHHHHH
Confidence 43 32 223334678999999999998886541 1 1 1356788999999977654
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.31 E-value=0.0057 Score=65.58 Aligned_cols=199 Identities=16% Similarity=0.246 Sum_probs=124.2
Q ss_pred chHHHHHHHHHhccCCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCEEEEEEeCCc---CCHHHHHHHHHHHhCCCC
Q 036761 160 MQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFDFLIWVVVSKD---LQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~ 235 (897)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++.++.+ .++.+.+.+- .+-......++.++|.-.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888889999999999999999 77776642 2666665432 234455555555554321
Q ss_pred -----------------------chhccccHHHHHHH--------HHH-------------------Hhc---cCceEEE
Q 036761 236 -----------------------DSWMKKNLAERAVD--------IYN-------------------VLK---EKKFVLL 262 (897)
Q Consensus 236 -----------------------~~~~~~~~~~~~~~--------l~~-------------------~l~---~~~~LlV 262 (897)
..+. .+.+..... |++ +|. .++-+||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfS-es~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFS-ESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1111 122222111 221 111 1256899
Q ss_pred Eeccccc-----------cccccccccCCCCCCCCcEEEEecCChhHhh----hcC--CCceEEcCCCChHHHHHHHHHH
Q 036761 263 LDDVWQR-----------VAFTTVGVPIPPRDKSASKVVFTTRSTEVCG----WMG--AHKNFEVGCLSANDARELFRQN 325 (897)
Q Consensus 263 lDdv~~~-----------~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~lf~~~ 325 (897)
+|+.... .+|.. .+...+ - .+||++|-+..... .+. ..+.+.|.-.+++.|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa---~Lv~~n-I-AHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAA---SLVQNN-I-AHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHH---HHHhcC-c-cEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998532 22332 222222 2 58999988765432 232 3456899999999999999998
Q ss_pred hCCCccC------------CC-----CcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHH
Q 036761 326 VGEETLN------------GH-----PDIRELSETVTKECGSLPLALIITGRAMACKKTPEE 370 (897)
Q Consensus 326 ~~~~~~~------------~~-----~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~ 370 (897)
....... .. .....-....++..||=-.-+..+++.++...++.+
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 8543100 00 123344566778889999999999999988765543
No 198
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0045 Score=66.77 Aligned_cols=144 Identities=21% Similarity=0.305 Sum_probs=88.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
....+.+.|++|+|||+||..++... .|..+--++... ....++......+...+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~---------------------miG~sEsaKc~~i~k~F 591 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPED---------------------MIGLSESAKCAHIKKIF 591 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHH---------------------ccCccHHHHHHHHHHHH
Confidence 45678899999999999999998754 455443322111 12223333444444433
Q ss_pred ----ccCceEEEEeccccccccccccccC---------------CCCCCCCcEEEEecCChhHhhhcCC----CceEEcC
Q 036761 255 ----KEKKFVLLLDDVWQRVAFTTVGVPI---------------PPRDKSASKVVFTTRSTEVCGWMGA----HKNFEVG 311 (897)
Q Consensus 255 ----~~~~~LlVlDdv~~~~~~~~~~~~l---------------~~~~~~~s~iivTtR~~~v~~~~~~----~~~~~l~ 311 (897)
+..=-.||+||+....+|-.++..+ |..++. --|+-||....|...|+. ...|.++
T Consensus 592 ~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~k-Lli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRK-LLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCce-EEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 4455789999998877776654432 222222 345567777777776654 3468999
Q ss_pred CCCh-HHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHc
Q 036761 312 CLSA-NDARELFRQNVGEETLNGHPDIRELSETVTKEC 348 (897)
Q Consensus 312 ~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~ 348 (897)
.++. ++..+.++..-- -.+.+.+.++++...+|
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 9987 677777765431 12234555667776666
No 199
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.012 Score=62.83 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=57.2
Q ss_pred cCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCCh-hHh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCcc
Q 036761 256 EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRST-EVC-GWMGAHKNFEVGCLSANDARELFRQNVGEETL 331 (897)
Q Consensus 256 ~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~-~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 331 (897)
+++-++|+|+++. ......+...+-....+ +.+|++|.+. .+. ........+.+.+++.++..+.+.+. +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~-- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPG-TVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA-- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcC-cEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC--
Confidence 4455888999974 44555555555554555 6666555554 332 22233467999999999999988775 211
Q ss_pred CCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 332 NGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 332 ~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+ ...++..++|.|..+..+
T Consensus 207 ---~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ---D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---h-----HHHHHHHcCCCHHHHHHH
Confidence 1 233577889999765544
No 200
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.24 E-value=0.00013 Score=83.99 Aligned_cols=243 Identities=23% Similarity=0.259 Sum_probs=114.5
Q ss_pred cCCCcccEEEccCCCCCcc--cCccccCccCCCEeeccCC--CccccC----hhhhcCCcCcEecCCCCccccccChhhh
Q 036761 564 KSMPRLKVLNLSGARRMSS--FPLGISVLVSLQHLDLSGT--AIRELP----KELNALENLQCLNLEETHFLITIPRQLI 635 (897)
Q Consensus 564 ~~l~~L~~L~Ls~~~~~~~--lp~~i~~L~~L~~L~L~~~--~i~~lp----~~i~~L~~L~~L~L~~~~~l~~lp~~~~ 635 (897)
..++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+...+ .....+++|+.|++++|..+....-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3456666676666655554 2234455667777777652 122111 2233456667777776653232221112
Q ss_pred -hcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEecc
Q 036761 636 -SSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSF 714 (897)
Q Consensus 636 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 714 (897)
..+++|++|.+.+|...+ +.........+++|++|+++++.......+......+++++.|.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt-------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLT-------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhhCCCcceEccCCCCccc-------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 236667777655554211 122344445566677777776654322222222222334444333332
Q ss_pred C---CCcccccccccccC--CCCceeeeecCCccEEEecccCcCCCCcc-EEEEeCCCCCC-CCcc-cccCCCccEEEEe
Q 036761 715 K---RSEPLDVSALAGLK--HLNRLWIHECEELEELEMARQPFDFRSLK-KIQIYGCHRLK-DLTF-LLFAPNLKSIEVS 786 (897)
Q Consensus 715 ~---~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~~~~~~~l~~L~-~L~L~~c~~l~-~l~~-l~~l~~L~~L~L~ 786 (897)
. .++......+.... .+..+.+.+|+.++.+..... . ..... .+.+.+|+.++ .+.. ......|+.|+++
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~-~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC-G-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLS 409 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh-h-ccCcchHHHhcCCcccchHHHHHhccCCccceEecc
Confidence 2 12222111111111 344444444444443322211 1 11122 45666776662 2221 2233448889998
Q ss_pred cCchhhhhhcccccCCccccccCCCcccccceeeccccccccccc
Q 036761 787 SCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIY 831 (897)
Q Consensus 787 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 831 (897)
.|...+.-.- ......+.+++.+.+.+|+......
T Consensus 410 ~~~~~t~~~l----------~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 410 DCRLVTDKGL----------RCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred cCccccccch----------HHHhhhhhccccCCccCcccccchh
Confidence 8876554311 0001116788888888888776654
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0044 Score=68.05 Aligned_cols=171 Identities=15% Similarity=0.132 Sum_probs=97.0
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.++=|.++.+.+|.+.+.. ...+-|.+||++|+|||.||+++++... -. ++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vP-----f~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VP-----FLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cc-----eEeecch-----
Confidence 4456889999888876642 2456788999999999999999999883 22 2333322
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc---cc----------cccccc---C--CCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---AF----------TTVGVP---I--PPRDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~----------~~~~~~---l--~~~~~ 284 (897)
+|+... ...+++.+.+.+.+.-..-++++++|+++... +| .++... + .....
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 222222 23445555555556666789999999996421 11 111111 1 11111
Q ss_pred CCcEEEEecCChhH----hhhc-CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 285 SASKVVFTTRSTEV----CGWM-GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 285 ~~s~iivTtR~~~v----~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.+.-||-+|..++. ..+. .-+..|.+..-+...-.++++..+.+-.....-+ .++|++..-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 21344444444333 1112 2245688888888777777777664333222233 34555555443
No 202
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.24 E-value=0.0019 Score=68.54 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=64.4
Q ss_pred HHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCE-EEEEEeCCc-CCHHHHHHHHHHHhCCCCchhcc
Q 036761 164 LDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDF-LIWVVVSKD-LQIEKIQEIIGKKVGLFNDSWMK 240 (897)
Q Consensus 164 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~ 240 (897)
..++++.+.. +....+.|+|.+|+|||||++.+++.... ++-+. ++|+.+.+. ..+.++.+.+...+.........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446666654 45567799999999999999999887632 23344 467677654 47788888887766543211011
Q ss_pred ---ccHHHHHHHHHHHh--ccCceEEEEeccc
Q 036761 241 ---KNLAERAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 241 ---~~~~~~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
.........+.+++ .+++++||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11111111222222 4789999999984
No 203
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.22 E-value=0.009 Score=63.92 Aligned_cols=175 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred HHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC---E-----EEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 163 QLDKVWSCLVEEP-VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD---F-----LIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 163 ~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.-+++.+.+.++. ...+.++|+.|+||+++|..++...--....+ | .-++..+..+|+..+. .
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------P 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------c
Confidence 4456777776655 45778999999999999999876652111000 0 0000011111111000 0
Q ss_pred CCchhccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChh-Hh-hhcCC
Q 036761 234 FNDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWMGA 304 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~~~ 304 (897)
... ......++.. .+.+.+ .+++=++|+|+++. ......+...+-....+ +.+|++|.+.+ +. .....
T Consensus 82 ~~~-~~~I~idqiR-~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~-t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 82 EKG-KSSLGVDAVR-EVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPEN-TWFFLACREPARLLATLRSR 158 (334)
T ss_pred ccc-cccCCHHHHH-HHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCC-eEEEEEECChhhChHHHHhc
Confidence 000 0011222222 233333 25566899999974 33444454445444444 77777776643 32 22233
Q ss_pred CceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 305 HKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 305 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
...+.+.+++.+++.+.+.+..+.+ .+.+..++..++|.|..+.
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 4568999999999998886543211 2236788999999996544
No 204
>PRK12377 putative replication protein; Provisional
Probab=97.21 E-value=0.00067 Score=68.88 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=45.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
....+.|+|.+|+|||+||.++++... .....++++++. ++...+-..... ..... .+.+.+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~l 161 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQEL 161 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHHh
Confidence 346789999999999999999999884 333345666543 444444333211 01111 122223
Q ss_pred ccCceEEEEeccc
Q 036761 255 KEKKFVLLLDDVW 267 (897)
Q Consensus 255 ~~~~~LlVlDdv~ 267 (897)
.+.=||||||+.
T Consensus 162 -~~~dLLiIDDlg 173 (248)
T PRK12377 162 -CKVDLLVLDEIG 173 (248)
T ss_pred -cCCCEEEEcCCC
Confidence 345689999994
No 205
>PRK07261 topology modulation protein; Provisional
Probab=97.20 E-value=0.00079 Score=64.78 Aligned_cols=65 Identities=23% Similarity=0.406 Sum_probs=42.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccC-CCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLG-QGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
.|.|+|++|+||||||+.+...... .-+.|...|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 4899999999999999999876532 123455555211 1223345566666667766
Q ss_pred CceEEEEeccc
Q 036761 257 KKFVLLLDDVW 267 (897)
Q Consensus 257 ~~~LlVlDdv~ 267 (897)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 66 5778764
No 206
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=0.00019 Score=70.65 Aligned_cols=63 Identities=35% Similarity=0.527 Sum_probs=27.1
Q ss_pred hcCCCcccEEEccCC--CCCcccCccccCccCCCEeeccCCCccccC--hhhhcCCcCcEecCCCCc
Q 036761 563 FKSMPRLKVLNLSGA--RRMSSFPLGISVLVSLQHLDLSGTAIRELP--KELNALENLQCLNLEETH 625 (897)
Q Consensus 563 ~~~l~~L~~L~Ls~~--~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~ 625 (897)
|..|++|++|.++.| +....++-....+++|++|++++|+|+.+. ..+..+.||..|++.+|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 334455555555554 222233333334455555555555444211 123344444444544443
No 207
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.13 E-value=0.0014 Score=72.68 Aligned_cols=186 Identities=13% Similarity=0.147 Sum_probs=108.9
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
+++||.+.-...|...+..+.. .-....|+-|+||||+|+-++...--.. + ....+++.-...+.|...-..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~~ 88 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSLI 88 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCcc
Confidence 5679999999999999877643 4667899999999999999887652111 1 111222222222333222000
Q ss_pred CC---chhccccHHHHHHHHHHHh-----ccCceEEEEeccc--cccccccccccCCCCCCCCcEEEEecCCh-hH-hhh
Q 036761 234 FN---DSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVW--QRVAFTTVGVPIPPRDKSASKVVFTTRST-EV-CGW 301 (897)
Q Consensus 234 ~~---~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~~~~~~~~l~~~~~~~s~iivTtR~~-~v-~~~ 301 (897)
.. +.......++. +.|.+.. +++.=+.|+|.|. +...|..+...+-..... .+.|+.|.+. .+ ...
T Consensus 89 DviEiDaASn~gVddi-R~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~h-V~FIlATTe~~Kip~TI 166 (515)
T COG2812 89 DVIEIDAASNTGVDDI-REIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSH-VKFILATTEPQKIPNTI 166 (515)
T ss_pred cchhhhhhhccChHHH-HHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccC-eEEEEecCCcCcCchhh
Confidence 00 00011122222 2222222 2444588999996 455676666555554444 5666666554 33 223
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 302 MGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 302 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
....+.|.++.++.++-...+...+..+....+ ++...-|++...|..
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSL 214 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCCh
Confidence 344567999999999999999998876553332 344566666666643
No 208
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.09 E-value=0.0011 Score=63.55 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=51.0
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..-....-+.+.-.++|+...+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGID 93 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGID 93 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccH
Confidence 5679999999999888888899999999999999999888888877433333455555555444333
No 209
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.08 E-value=0.0033 Score=75.40 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=59.6
Q ss_pred CCCccchHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------E--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||+||+.++... +...+.++.+...+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~-- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTV-- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccH--
Confidence 4568999888888877652 1 23468999999999999999999876 233455555543222111
Q ss_pred HHHHHhCCCCchhccccHHHHHHHHHHHhccCc-eEEEEecccc
Q 036761 226 IIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKK-FVLLLDDVWQ 268 (897)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~LlVlDdv~~ 268 (897)
...++.+.. ....+. ...+.+.++.++ -+++||+++.
T Consensus 527 --~~lig~~~g-yvg~~~---~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 527 --SRLIGAPPG-YVGFEQ---GGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred --HHHhcCCCC-Ccccch---hhHHHHHHHhCCCeEEEEechhh
Confidence 122222111 011111 122344444444 4999999974
No 210
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.06 E-value=0.0048 Score=69.24 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=92.1
Q ss_pred CCCccchHHHHHHHHHhc---c-------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E-------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
+++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. .-.| +-+..+. +.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~~------l~ 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVGK------LF 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhHH------hc
Confidence 345687777666654221 1 235678999999999999999999986 2222 1222211 11
Q ss_pred HHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----c----------ccccccCCCCCCCCcEEE
Q 036761 225 EIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----F----------TTVGVPIPPRDKSASKVV 290 (897)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~----------~~~~~~l~~~~~~~s~ii 290 (897)
.. ....+...+...+...-...+.+|++|+++.... . ..+...+.....+ .-||
T Consensus 297 ----~~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~-V~vI 364 (489)
T CHL00195 297 ----GG-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSP-VFVV 364 (489)
T ss_pred ----cc-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCc-eEEE
Confidence 00 0111222222223222335789999999964210 0 0011111112222 4567
Q ss_pred EecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 291 FTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 291 vTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.||.+... .....-+..+.++.-+.++-.++|+.+.......... ..-...+++.+.|.-
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 77776542 1111335678899999999999999887543211111 111456666666543
No 211
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.00059 Score=64.32 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=39.4
Q ss_pred ceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccC-ccCCCEeeccCCCccccCh--hhhcCCcCcEec
Q 036761 544 LLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISV-LVSLQHLDLSGTAIRELPK--ELNALENLQCLN 620 (897)
Q Consensus 544 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~-L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~ 620 (897)
...++|+ +|.+..++. |..++.|..|.|++| .++.+...+.. +++|+.|.|.+|+|.++-+ .+..+++|++|.
T Consensus 44 ~d~iDLt-dNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 44 FDAIDLT-DNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cceeccc-ccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455555 444544443 555566666666665 44444333332 3346666666655554422 234455555555
Q ss_pred CCCCc
Q 036761 621 LEETH 625 (897)
Q Consensus 621 L~~~~ 625 (897)
+-+|.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 55554
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0074 Score=64.19 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeC
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVS 215 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 215 (897)
..-+.++|..|+|||+||..+++....+ -..++++++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH
Confidence 3779999999999999999999987422 2356666543
No 213
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0013 Score=67.75 Aligned_cols=105 Identities=17% Similarity=0.135 Sum_probs=57.0
Q ss_pred HHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHH
Q 036761 169 SCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAV 248 (897)
Q Consensus 169 ~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 248 (897)
+|+. ...-+.|+|++|+|||.||..+.+... .....++|++ ..++...+..... ..+.+..
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~--~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~-- 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALI--ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESA-- 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHH--HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHH--
Confidence 4553 345689999999999999999998763 2233455554 3445555533211 1122222
Q ss_pred HHHHHhccCceEEEEeccccc--ccc--ccccccCCCCCCCCcEEEEecCCh
Q 036761 249 DIYNVLKEKKFVLLLDDVWQR--VAF--TTVGVPIPPRDKSASKVVFTTRST 296 (897)
Q Consensus 249 ~l~~~l~~~~~LlVlDdv~~~--~~~--~~~~~~l~~~~~~~s~iivTtR~~ 296 (897)
.+.+. +.=||||||+... ..+ ..+...+.....+ ..+||||...
T Consensus 162 --l~~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~ 209 (269)
T PRK08181 162 --IAKLD-KFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQP 209 (269)
T ss_pred --HHHHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCC
Confidence 22222 3459999999532 111 1222222222222 4588888764
No 214
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.03 E-value=0.011 Score=61.45 Aligned_cols=55 Identities=24% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHH
Q 036761 163 QLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 163 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
-++++..++.. ..-|.|.|++|+|||+||+.++... . ...+.+++....+..+++
T Consensus 10 l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l--g---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR--D---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh--C---CCEEEEeCCccCCHHHHh
Confidence 34455555543 3456799999999999999998744 2 234456666555554443
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.0023 Score=62.82 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=54.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchh-ccccHHHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSW-MKKNLAERAVDIYNV 253 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~~ 253 (897)
++|+.++|+.|+||||.+.+++.....+ -..+..++.... ....+.++..++.++.+.... ...+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999888887777433 445666665432 355677888888888653211 122344444333333
Q ss_pred hccCc-eEEEEecc
Q 036761 254 LKEKK-FVLLLDDV 266 (897)
Q Consensus 254 l~~~~-~LlVlDdv 266 (897)
.+.++ =++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44433 47777765
No 216
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.0049 Score=74.18 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.+..++++.+.+.- ...+.|.++|++|+||||||+.+++.. ...| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecH------
Confidence 4567999999888776531 234678899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc-------------ccccccccCCCC-CCCCc
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-------------AFTTVGVPIPPR-DKSAS 287 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~~-~~~~s 287 (897)
++. ... .......+...+.......+.+|++|+++... ....+...+... ..+..
T Consensus 247 ~i~----~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIM----SKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHh----ccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 111 000 11112223333333445567899999985321 011121111111 12213
Q ss_pred EEEEecCChh-Hhhhc----CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch
Q 036761 288 KVVFTTRSTE-VCGWM----GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL 353 (897)
Q Consensus 288 ~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl 353 (897)
.||.||.... +...+ .-...+.+...+.++-.+++...........+. ....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCH
Confidence 3343555433 11111 123467888889898888888665432211111 24667777877643
No 217
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.01 E-value=0.008 Score=61.45 Aligned_cols=171 Identities=18% Similarity=0.168 Sum_probs=104.3
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCH-HHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQI-EKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~ 229 (897)
..++|-.++..++-.++.+ +...-|.|+|+.|.|||+|......+. +..-+..+-|........ +-.++.|.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 5678999999888888865 566678899999999999998887773 333344555555444333 234556666
Q ss_pred HhCCCCc--hhccccHHHHHHHHHHHhcc------CceEEEEeccccccc------cccccccCCCCCCCCcEEEEecCC
Q 036761 230 KVGLFND--SWMKKNLAERAVDIYNVLKE------KKFVLLLDDVWQRVA------FTTVGVPIPPRDKSASKVVFTTRS 295 (897)
Q Consensus 230 ~l~~~~~--~~~~~~~~~~~~~l~~~l~~------~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~s~iivTtR~ 295 (897)
++..... .....+..+....+...|+. -++++|+|.++--.. +-.+...-.....+-+-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 6543221 11233445555666666643 358888888753211 000100011111221667789986
Q ss_pred h-------hHhhhcCCCceEEcCCCChHHHHHHHHHHhC
Q 036761 296 T-------EVCGWMGAHKNFEVGCLSANDARELFRQNVG 327 (897)
Q Consensus 296 ~-------~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 327 (897)
. .|-++.....++-++.++-++...++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 4 3445555556677888888898888888764
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.0018 Score=65.62 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=51.1
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhcc
Q 036761 163 QLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMK 240 (897)
Q Consensus 163 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 240 (897)
.+..+.++..+ .....+.++|.+|+|||+||..+++.... .-..+++++ ..++...+...... ..
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~~-----~~ 150 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFSN-----SE 150 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHhh-----cc
Confidence 34444444432 23357899999999999999999998743 234556654 34454444433310 11
Q ss_pred ccHHHHHHHHHHHhccCceEEEEecccc
Q 036761 241 KNLAERAVDIYNVLKEKKFVLLLDDVWQ 268 (897)
Q Consensus 241 ~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 268 (897)
.+.+ .+.+.+. +.=+||+||+..
T Consensus 151 ~~~~----~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 151 TSEE----QLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred ccHH----HHHHHhc-cCCEEEEeCCCC
Confidence 1222 2333344 344888899954
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.019 Score=66.82 Aligned_cols=115 Identities=22% Similarity=0.381 Sum_probs=70.4
Q ss_pred CCCccchHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
..++|.++.++.+.+.+.. ...++....|+.|+|||-||++++...- +.=+..+-+..|......
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf--g~e~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF--GDEQALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc--CCCccceeechHHHHHHH----
Confidence 4578999999999887752 2456788899999999999999998772 111455555555432222
Q ss_pred HHHHHhCCCCchhccccHHHHHHHHHHHhccCce-EEEEecccc--ccccccccccC
Q 036761 226 IIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKF-VLLLDDVWQ--RVAFTTVGVPI 279 (897)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~--~~~~~~~~~~l 279 (897)
.+.+-+|.+.. ... .++ ...|-+..+.++| +|.||++.. ++.+.-+...|
T Consensus 565 sVSrLIGaPPG-YVG--yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 565 SVSRLIGAPPG-YVG--YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred HHHHHhCCCCC-Cce--ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 23333343321 111 111 3446667788888 788899974 33344343333
No 220
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=9.5e-05 Score=72.72 Aligned_cols=100 Identities=25% Similarity=0.265 Sum_probs=61.9
Q ss_pred CccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccCh--hhhcCCcCcE
Q 036761 541 CLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPK--ELNALENLQC 618 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~ 618 (897)
+.+.+.|++. ++.+.+|.- ..+|+.|++|.||-| .|+.+. .+..|.+|+.|+|+.|.|..+.+ -+.+|++|+.
T Consensus 18 l~~vkKLNcw-g~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCW-GCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhccc-CCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 4556667776 445555543 567777777777777 666664 56677777777777777665543 2556677777
Q ss_pred ecCCCCccccccChh----hhhcCCccceee
Q 036761 619 LNLEETHFLITIPRQ----LISSFSSLIVLR 645 (897)
Q Consensus 619 L~L~~~~~l~~lp~~----~~~~l~~L~~L~ 645 (897)
|=|..|...+.-+.+ ++.-|++|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 766666554443322 244555555554
No 221
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0001 Score=72.45 Aligned_cols=77 Identities=22% Similarity=0.238 Sum_probs=34.0
Q ss_pred cccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccCh-hhhhcCCccceeec
Q 036761 568 RLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRM 646 (897)
Q Consensus 568 ~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l 646 (897)
+.+.|++.|| .+.++. ....++.|++|.||-|+|+.| ..+..+++|++|+|..|.+ .++.. ..+.++++|+.|.+
T Consensus 20 ~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhh
Confidence 3444455555 444332 223444555555555555544 2344455555555555442 22211 11344444555544
Q ss_pred cc
Q 036761 647 FG 648 (897)
Q Consensus 647 ~~ 648 (897)
..
T Consensus 96 ~E 97 (388)
T KOG2123|consen 96 DE 97 (388)
T ss_pred cc
Confidence 44
No 222
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.88 E-value=0.015 Score=69.93 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=94.9
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+++++.. ...| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 4567888887777665431 234568899999999999999999976 3222 22221 1
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc---------c-----cccccccCCC-CCCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---------A-----FTTVGVPIPP-RDKSA 286 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---------~-----~~~~~~~l~~-~~~~~ 286 (897)
+ +.... ...+...+...+...-...+.+|++|+++... . ...+...+.. ...++
T Consensus 522 ~----l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 E----ILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred H----Hhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 11111 11222223333333334567999999985321 0 0111111111 01122
Q ss_pred cEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 287 SKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 287 s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.-||.||...+... .. .-+..+.++..+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 56777776655421 11 2356788999999999999987764433222223 355666776643
No 223
>PRK04132 replication factor C small subunit; Provisional
Probab=96.86 E-value=0.014 Score=69.37 Aligned_cols=156 Identities=13% Similarity=0.032 Sum_probs=94.4
Q ss_pred EEc--CCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCc
Q 036761 181 LYG--MGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKK 258 (897)
Q Consensus 181 I~G--~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 258 (897)
+.| |.++||||+|..++++.-....-..++-+++++..+...+...+-+...... .-..+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-----------------~~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP-----------------IGGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-----------------cCCCCC
Confidence 346 7899999999999998632211134677788876565544433322211100 001245
Q ss_pred eEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCC
Q 036761 259 FVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGH 334 (897)
Q Consensus 259 ~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~ 334 (897)
-++|+|+++.. .+...+...+-..... +++|++|.+.. +. ........+.+++++.++....+...+.......+
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~-~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~ 710 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 710 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCC-eEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 79999999753 3455554444332333 67777666543 32 11223467999999999999888877644322212
Q ss_pred CcHHHHHHHHHHHcCCcchHHHH
Q 036761 335 PDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 335 ~~~~~~~~~i~~~~~glPlai~~ 357 (897)
.+....|++.++|.+..+..
T Consensus 711 ---~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 711 ---EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred ---HHHHHHHHHHcCCCHHHHHH
Confidence 45688999999998855433
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.84 E-value=0.0022 Score=66.35 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV 214 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 214 (897)
....+.++|..|+|||+||.++++....+ ....+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cCceEEEEEH
Confidence 45678999999999999999999987322 1345666664
No 225
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.83 E-value=0.00061 Score=65.79 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
...-+.|+|..|+|||.||..+.+.... +-..+.|++ ..+++..+-..- ....... +.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~------~~~L~~~l~~~~-------~~~~~~~----~~~~l 106 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT------ASDLLDELKQSR-------SDGSYEE----LLKRL 106 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE------HHHHHHHHHCCH-------CCTTHCH----HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee------cCceeccccccc-------cccchhh----hcCcc
Confidence 4467999999999999999999987743 223456664 344555543221 1111112 22333
Q ss_pred ccCceEEEEecccc
Q 036761 255 KEKKFVLLLDDVWQ 268 (897)
Q Consensus 255 ~~~~~LlVlDdv~~ 268 (897)
. +-=||||||+..
T Consensus 107 ~-~~dlLilDDlG~ 119 (178)
T PF01695_consen 107 K-RVDLLILDDLGY 119 (178)
T ss_dssp H-TSSCEEEETCTS
T ss_pred c-cccEecccccce
Confidence 3 334788999953
No 226
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0033 Score=63.59 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccC--CCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLG--QGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
.++|.++|++|.|||+|.++++++..+ ...|....-+.+. -..++...... ...-...+.++|.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 478999999999999999999999876 3334333333332 22333333221 234456667777787
Q ss_pred hccCc--eEEEEecccc
Q 036761 254 LKEKK--FVLLLDDVWQ 268 (897)
Q Consensus 254 l~~~~--~LlVlDdv~~ 268 (897)
+.++. +.+.+|.|..
T Consensus 245 v~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVES 261 (423)
T ss_pred HhCCCcEEEEEeHHHHH
Confidence 87765 4556799854
No 227
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.80 E-value=0.0016 Score=68.86 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=45.4
Q ss_pred CCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcccC-----CCCCCEEEE
Q 036761 156 PTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKFLG-----QGDFDFLIW 211 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----~~~f~~~~w 211 (897)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+++.... .+.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 689999999999998864 24689999999999999999999888743 234555555
No 228
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0072 Score=65.46 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=81.5
Q ss_pred CCccchHHHHHHHHHhcc-CCceE-EEEEcCCCCcHHHHHHHHHhcccCCC-------------------CCCEEEEEEe
Q 036761 156 PTVGMQSQLDKVWSCLVE-EPVGI-VGLYGMGGVGKTTLLTHLHNKFLGQG-------------------DFDFLIWVVV 214 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~f~~~~wv~~ 214 (897)
.++|-+....++..+..+ ++.+. +.++|+.|+||||+|..+++..-... ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 457778888888888874 44555 99999999999999999988774211 1233444554
Q ss_pred CCcCC---HHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEE
Q 036761 215 SKDLQ---IEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKV 289 (897)
Q Consensus 215 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~i 289 (897)
+.... ..+..+.+.+...... ..++.-++++|+++.. ..-..+...+...... +.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~-~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN-TRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC-eEE
Confidence 44433 2333444443333211 0356678999999753 2233333333333344 788
Q ss_pred EEecCChh-Hhh-hcCCCceEEcCCCCh
Q 036761 290 VFTTRSTE-VCG-WMGAHKNFEVGCLSA 315 (897)
Q Consensus 290 ivTtR~~~-v~~-~~~~~~~~~l~~L~~ 315 (897)
|++|.+.. +.. .......+.+.+.+.
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCCchH
Confidence 88887432 222 112234566666333
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.75 E-value=0.00084 Score=66.27 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=43.7
Q ss_pred ccceEeecccccccccccccCCccceeeehhccc-cc-cccchhhhcCCCcccEEEccCCCCCcccC--ccccCccCCCE
Q 036761 520 ENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNE-EL-EMITSDFFKSMPRLKVLNLSGARRMSSFP--LGISVLVSLQH 595 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~l-~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp--~~i~~L~~L~~ 595 (897)
..+.++++.+..++.+..++.+++|+.|.++.++ .+ ..++.- ...+++|++|++++| .+..+. ..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 3455566666666666666666666666666221 11 122221 334466666666666 443311 12344556666
Q ss_pred eeccCCCccc
Q 036761 596 LDLSGTAIRE 605 (897)
Q Consensus 596 L~L~~~~i~~ 605 (897)
|++.+|..+.
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 6666665443
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.73 E-value=0.0054 Score=74.70 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=44.2
Q ss_pred CCCccchHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.++.... ..-...+.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~--~~~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF--DDEDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc--CCCCcEEEEechh
Confidence 46799999999998877531 245788999999999999999998762 2223445555554
No 231
>PRK09183 transposase/IS protein; Provisional
Probab=96.72 E-value=0.0035 Score=64.66 Aligned_cols=26 Identities=35% Similarity=0.324 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+.|+|++|+|||+||..++...
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999998765
No 232
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.011 Score=71.86 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=42.5
Q ss_pred CCCccchHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------E--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|.+..++.+...+.. . ...++.++|+.|+|||++|+.+++... ..-...+.+.++.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~--~~~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF--DSDDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh--cCCCcEEEEEhHH
Confidence 4578999999888877652 1 125789999999999999999987652 2223345555543
No 233
>PRK06526 transposase; Provisional
Probab=96.71 E-value=0.0016 Score=66.80 Aligned_cols=27 Identities=30% Similarity=0.198 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...-+.|+|++|+|||+||..+.....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 345689999999999999999987763
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.70 E-value=0.0013 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.67 E-value=0.021 Score=60.92 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999987764
No 236
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.65 E-value=0.0045 Score=65.07 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-+++-|+|++|+||||||.+++.... ..-..++|+.....++.. .+++++...+. ....+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 557999999999999999998877663 334667888777665543 35555553321 12234455555555
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
..++ +..-+||+|.+-
T Consensus 127 ~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHhhccCCcEEEEcchh
Confidence 5554 456689999984
No 237
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.64 E-value=0.0079 Score=61.08 Aligned_cols=46 Identities=24% Similarity=0.303 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKI 223 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (897)
...++.|+|.+|+|||++|.+++.... .....++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC-CCCHHHH
Confidence 457999999999999999999987663 334678899887 5555443
No 238
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.64 E-value=0.0077 Score=58.59 Aligned_cols=49 Identities=27% Similarity=0.400 Sum_probs=38.7
Q ss_pred CCCCCccchHHHHHHHHH----hccCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 153 PIEPTVGMQSQLDKVWSC----LVEEPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 153 ~~~~~vGr~~~~~~l~~~----L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....++|.|...+.+++- +..-...-|.+||--|+|||+|++++.+...
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 346679999988888753 3333556788999999999999999999883
No 239
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.63 E-value=0.011 Score=60.67 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------hccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD----FDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------WMKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (897)
...++.|+|.+|+|||+||.+++-....... ...++|++....++...+. .+++..+..... ....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 4579999999999999999999754322221 3689999988877655443 333443322110 011112
Q ss_pred H---HHHHHHHHHhcc--CceEEEEeccc
Q 036761 244 A---ERAVDIYNVLKE--KKFVLLLDDVW 267 (897)
Q Consensus 244 ~---~~~~~l~~~l~~--~~~LlVlDdv~ 267 (897)
+ .....+.+.+.. +.-+||+|.+.
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 2 233344444433 45688888873
No 240
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.63 E-value=0.0013 Score=60.81 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 158 VGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 158 vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
||+...++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 5777777777776654 455677899999999999999988865
No 241
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.63 E-value=0.0046 Score=65.04 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=56.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .+++++...+. ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 46799999999999999999987665 2334668899887766643 34555543221 12234455555555
Q ss_pred HHhcc-CceEEEEeccc
Q 036761 252 NVLKE-KKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~~-~~~LlVlDdv~ 267 (897)
..++. ..-+||+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 55543 45689999984
No 242
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.62 E-value=0.0048 Score=74.56 Aligned_cols=46 Identities=28% Similarity=0.434 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------E--PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.+..++.+.+.+.. . ...++.++|+.|+|||.||+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999887632 1 34578999999999999999988776
No 243
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.61 E-value=0.036 Score=54.58 Aligned_cols=169 Identities=16% Similarity=0.217 Sum_probs=96.2
Q ss_pred CCCccchHHHHH---HHHHhccC------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDK---VWSCLVEE------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
++.||.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++... -.| +-|... .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~---l~vkat---------~ 186 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL---LLVKAT---------E 186 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce---EEechH---------H
Confidence 466898887654 56677652 578899999999999999999999873 222 212111 1
Q ss_pred HHHHHhCCCCchhccccHHHHHHHHHHHhc-cCceEEEEeccccc----------ccccccccc----CC--CCCCCCcE
Q 036761 226 IIGKKVGLFNDSWMKKNLAERAVDIYNVLK-EKKFVLLLDDVWQR----------VAFTTVGVP----IP--PRDKSASK 288 (897)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~----------~~~~~~~~~----l~--~~~~~~s~ 288 (897)
-|.+-. .+-...++.+.+..+ .-++++.+|.++.. .+..++..+ +. ..+.| ..
T Consensus 187 liGehV---------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG-Vv 256 (368)
T COG1223 187 LIGEHV---------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG-VV 256 (368)
T ss_pred HHHHHh---------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc-eE
Confidence 111111 122334444444443 45899999988531 011111111 11 11233 66
Q ss_pred EEEecCChhHhh---hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 289 VVFTTRSTEVCG---WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 289 iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.|-.|.+.+... ...-...|+..--+++|-.+++...+..-..+.... .+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 677777665522 122345678888888999999988874432222222 45566666654
No 244
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.58 E-value=0.0052 Score=69.06 Aligned_cols=72 Identities=25% Similarity=0.290 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
.-++..++|++|+||||||.-+++.. -..++=|++|+..+...+-..|...+.... .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~l 382 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHS-----------------VL 382 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhcc-----------------cc
Confidence 45799999999999999999998865 245778899998888888777766654322 22
Q ss_pred --ccCceEEEEecccc
Q 036761 255 --KEKKFVLLLDDVWQ 268 (897)
Q Consensus 255 --~~~~~LlVlDdv~~ 268 (897)
.+++.-||+|.++.
T Consensus 383 ~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 383 DADSRPVCLVIDEIDG 398 (877)
T ss_pred ccCCCcceEEEecccC
Confidence 26788899999975
No 245
>PRK09354 recA recombinase A; Provisional
Probab=96.58 E-value=0.006 Score=64.71 Aligned_cols=86 Identities=21% Similarity=0.171 Sum_probs=58.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-+++-|+|++|+||||||.+++... ...-..++||.....++. ..+++++...+. ....+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 46799999999999999999987666 334567889988877765 245556554321 12234455555555
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
..++ +..-+||+|-|-
T Consensus 132 ~li~s~~~~lIVIDSva 148 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHhhcCCCCEEEEeChh
Confidence 5554 345689999984
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.58 E-value=0.0049 Score=65.03 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=65.5
Q ss_pred cchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 159 GMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
+|....+...+++.. ...+-+.|+|..|+|||.||.++++... ..-..+.++++. +++..+.....-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEHH------HHHHHHHHHHhc-
Confidence 555555555555543 1346799999999999999999999984 222335555543 455555444321
Q ss_pred CchhccccHHHHHHHHHHHhccCceEEEEecccc--cccccc--ccccC-CCC-CCCCcEEEEecCC
Q 036761 235 NDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ--RVAFTT--VGVPI-PPR-DKSASKVVFTTRS 295 (897)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~--~~~~l-~~~-~~~~s~iivTtR~ 295 (897)
.+..+. .+.++ +-=||||||+.. ..+|.. +...+ ... ..+ -.+|+||.-
T Consensus 206 ------~~~~~~----l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~-~~ti~TSNl 260 (306)
T PRK08939 206 ------GSVKEK----IDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEE-LPTFFTSNF 260 (306)
T ss_pred ------CcHHHH----HHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCC-CeEEEECCC
Confidence 111222 22232 455899999953 334532 32222 222 122 567888864
No 247
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.57 E-value=0.07 Score=59.51 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
...+|+|+|++|+||||++..++.....+.....+..++.... ....+.+......++.... ...+...+...+. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~-~ 425 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLE-R 425 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHH-H
Confidence 4579999999999999999998876532222234555544321 1222333333444443221 1122333333333 3
Q ss_pred hccCceEEEEeccc
Q 036761 254 LKEKKFVLLLDDVW 267 (897)
Q Consensus 254 l~~~~~LlVlDdv~ 267 (897)
+.+ .=+|++|..-
T Consensus 426 l~~-~DLVLIDTaG 438 (559)
T PRK12727 426 LRD-YKLVLIDTAG 438 (559)
T ss_pred hcc-CCEEEecCCC
Confidence 333 4578888874
No 248
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.57 E-value=0.069 Score=57.73 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=34.8
Q ss_pred chHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcccCC
Q 036761 160 MQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ 203 (897)
Q Consensus 160 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 203 (897)
|+...+.|.+.+.+ +...+|+|.|.=|+||||+.+.+.+.....
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556677777765 467899999999999999999999888543
No 249
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.56 E-value=0.0073 Score=60.56 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
...++.|+|++|+|||++|.+++.... .....++|++... ++...+.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence 457999999999999999999887662 3357889999875 55555444
No 250
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.1 Score=58.61 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=88.1
Q ss_pred CCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 156 PTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++=|-++-+.+|.+.+.- ...+-|..+|++|+|||++|+.+++.. .-.| +.+..+ +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~--~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA--GMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh--cCCe-----eeccCH----H
Confidence 344577766666554431 356789999999999999999999987 4444 222211 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc-------------cccccccCCCCC-CCCcE
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA-------------FTTVGVPIPPRD-KSASK 288 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~~-~~~s~ 288 (897)
++.. +...++..+...+++.=+--+.++.||.++.... +..+..-+.... .++.-
T Consensus 504 L~sk-----------~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 504 LFSK-----------YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred HHHH-----------hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 1111 1222333333333333334568888888854211 011111111101 11133
Q ss_pred EEEecCChhH--hhhcC---CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHH
Q 036761 289 VVFTTRSTEV--CGWMG---AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSE 342 (897)
Q Consensus 289 iivTtR~~~v--~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~ 342 (897)
||-.|..++. ...+. .+..+.++.-+.+.-.++|+.++......+.-+++++++
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 4444444433 11222 456677877777888899999986654344444544443
No 251
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.55 E-value=0.019 Score=58.32 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=55.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------hccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------WMKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (897)
...++.|+|.+|+|||+||.+++....... .=..++|+.....++...+.+ +.+..+..... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ-LAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH-HHHHhccchhhhhccEEEEeCCCH
Confidence 457999999999999999999876652111 115678998877776655433 33332221100 112344
Q ss_pred HHHHHHHHHHhc---c-CceEEEEeccc
Q 036761 244 AERAVDIYNVLK---E-KKFVLLLDDVW 267 (897)
Q Consensus 244 ~~~~~~l~~~l~---~-~~~LlVlDdv~ 267 (897)
+++...+.+... . +.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 555555544432 3 44588889874
No 252
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.54 E-value=0.0039 Score=75.69 Aligned_cols=104 Identities=21% Similarity=0.351 Sum_probs=60.4
Q ss_pred CCCccchHHHHHHHHHhcc-------C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------E--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 225 (897)
..++|.+..++.+.+.+.. . ....+.++|+.|+|||+||+.+++..- +.-...+-+..+...+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~--~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF--GSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCccceEEEEchhccccccHHH
Confidence 5678999999999887742 1 234678999999999999999988762 1123344455444322222211
Q ss_pred HHHHHhCCCCchhccccHHHHHHHHHHHhccCce-EEEEecccc
Q 036761 226 IIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKF-VLLLDDVWQ 268 (897)
Q Consensus 226 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~ 268 (897)
-++.+. .....+. ...+.+.++.+++ +++||+++.
T Consensus 587 ----l~g~~~-gyvg~~~---~~~l~~~~~~~p~~VvllDeiek 622 (821)
T CHL00095 587 ----LIGSPP-GYVGYNE---GGQLTEAVRKKPYTVVLFDEIEK 622 (821)
T ss_pred ----hcCCCC-cccCcCc---cchHHHHHHhCCCeEEEECChhh
Confidence 122111 1111111 1234455555654 888999974
No 253
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.49 E-value=0.01 Score=67.14 Aligned_cols=56 Identities=29% Similarity=0.437 Sum_probs=43.0
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 214 (897)
++++--.+-++++.+||.+ ...+++.+.|++|+||||.++.+++.. .|+.+-|.+.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecCC
Confidence 3455556678888888864 235799999999999999999999876 4677777653
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.01 Score=60.85 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch
Q 036761 159 GMQSQLDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS 237 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 237 (897)
++.+.+..+.+.... +...-+.++|.+|+|||.||.++.++.. ..--.+.+++ ..++...+.....-
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~------~~el~~~Lk~~~~~---- 154 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFIT------APDLLSKLKAAFDE---- 154 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhc----
Confidence 444444444433211 3667789999999999999999999985 3333455554 44555555544432
Q ss_pred hccccHHHHHHHHHHHhccCceEEEEecccc
Q 036761 238 WMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ 268 (897)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 268 (897)
......|.+.+. +-=||||||+..
T Consensus 155 ------~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 155 ------GRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred ------CchHHHHHHHhh-cCCEEEEecccC
Confidence 011112222221 234899999953
No 255
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.47 E-value=0.018 Score=53.78 Aligned_cols=117 Identities=20% Similarity=0.168 Sum_probs=61.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC---cCCHHHHHHHHHHHhCC----CCchhccccHH-----
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK---DLQIEKIQEIIGKKVGL----FNDSWMKKNLA----- 244 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~----~~~~~~~~~~~----- 244 (897)
..|-|++..|.||||+|...+-+.. .+--.+.++..-+ ......+++.+- .+.. ....+...+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 5788999999999999998877763 3333455544332 233444443330 0100 00000001111
Q ss_pred --HHHHHHHHHhcc-CceEEEEeccccc-----cccccccccCCCCCCCCcEEEEecCChh
Q 036761 245 --ERAVDIYNVLKE-KKFVLLLDDVWQR-----VAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 245 --~~~~~l~~~l~~-~~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+.....++.+.. .-=|+|||++-.. .+.+.+...+.....+ .-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~-~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPED-LELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 112223344444 4459999998432 2333444444444444 78999999964
No 256
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.012 Score=55.24 Aligned_cols=126 Identities=21% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE---------------------eCCc---------------
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV---------------------VSKD--------------- 217 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---------------------~~~~--------------- 217 (897)
+....+.|+|++|.||||+.+.+|...+.. .+.+|+. |-++
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 355789999999999999999999877521 2233331 1111
Q ss_pred ------CCHHHHHHHHH---HHhCCCCch----hccccHHHHHHHHHHHhccCceEEEEecc----ccccccccccccCC
Q 036761 218 ------LQIEKIQEIIG---KKVGLFNDS----WMKKNLAERAVDIYNVLKEKKFVLLLDDV----WQRVAFTTVGVPIP 280 (897)
Q Consensus 218 ------~~~~~~~~~i~---~~l~~~~~~----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv----~~~~~~~~~~~~l~ 280 (897)
....++.+... +..++.... ..-..-++....|.+.+-+++-+++=|.- +.+..|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 11223333322 222332210 01123344455677777888889998864 3334454332 122
Q ss_pred CCCCCCcEEEEecCChhHhhhcC
Q 036761 281 PRDKSASKVVFTTRSTEVCGWMG 303 (897)
Q Consensus 281 ~~~~~~s~iivTtR~~~v~~~~~ 303 (897)
.-+.-|..||++|.+..+...+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 21222489999999998866553
No 257
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.14 Score=50.05 Aligned_cols=180 Identities=15% Similarity=0.227 Sum_probs=95.0
Q ss_pred Ccc-chHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 157 TVG-MQSQLDKVWSCLV-------------EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 157 ~vG-r~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
+|| -++.+++|.+.+. -...+-+.++|++|.|||-||++|++.- ..-|+.||.. +-
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---el 217 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---EL 217 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH---HH
Confidence 454 4666666655443 1356778899999999999999999865 2345666642 11
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhc-cCceEEEEeccccccc----------------ccccc---ccCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK-EKKFVLLLDDVWQRVA----------------FTTVG---VPIPPR 282 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~----------------~~~~~---~~l~~~ 282 (897)
+++-|.+ . ......+.-..+ .-+-+|..|.+++... .-++. ..|..
T Consensus 218 vqk~ige-----g--------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea- 283 (404)
T KOG0728|consen 218 VQKYIGE-----G--------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA- 283 (404)
T ss_pred HHHHhhh-----h--------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-
Confidence 2222211 1 112222222222 3467788888754210 00111 11211
Q ss_pred CCCCcEEEEecCChhHhhh--c---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 283 DKSASKVVFTTRSTEVCGW--M---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 283 ~~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
... -+||..|..-++... . ..+..|+.++-+.+.-.++++-+...-+....-++..+|+++....|.---++-+
T Consensus 284 tkn-ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 284 TKN-IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred ccc-eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhh
Confidence 122 688888877666321 1 2245578888777777777776654433233345555555554433333334444
Q ss_pred HHhh
Q 036761 358 TGRA 361 (897)
Q Consensus 358 ~~~~ 361 (897)
=|+.
T Consensus 363 eagm 366 (404)
T KOG0728|consen 363 EAGM 366 (404)
T ss_pred hhhH
Confidence 4443
No 258
>PRK06762 hypothetical protein; Provisional
Probab=96.43 E-value=0.025 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 259
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.42 E-value=0.0036 Score=69.63 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=40.5
Q ss_pred CCCccchHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLV------EEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++|.++.+++|++.|. +...+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 457999999999999883 3567899999999999999999999876
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.42 E-value=0.022 Score=57.45 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
...++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCCH
Confidence 467999999999999999999987663 2345678887655443
No 261
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.38 E-value=0.022 Score=58.59 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC----CCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh-------ccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG----QGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW-------MKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (897)
...+.=|+|.+|+|||.|+.+++-.... .+.-..++|++-...+....+. +|++..+...+.. ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4568999999999999999888654322 1223679999998888887775 4566654432110 11233
Q ss_pred HHHH---HHHHHHhcc-CceEEEEecc
Q 036761 244 AERA---VDIYNVLKE-KKFVLLLDDV 266 (897)
Q Consensus 244 ~~~~---~~l~~~l~~-~~~LlVlDdv 266 (897)
+++. ..+...+.+ +--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 3333 333333433 3458888887
No 262
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.086 Score=58.41 Aligned_cols=153 Identities=15% Similarity=0.207 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
...-|.+||++|+|||-||++|+|.. .-.| ++|..+ +++.. +..+++..+...+++.=
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa--g~NF-----isVKGP----ELlNk-----------YVGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA--GANF-----ISVKGP----ELLNK-----------YVGESERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc--cCce-----EeecCH----HHHHH-----------HhhhHHHHHHHHHHHhh
Confidence 45678899999999999999999987 3333 333321 11111 12233334444444444
Q ss_pred ccCceEEEEeccccc-------ccc------ccccccCCCC-CCCCcEEEEecCChhHhh--hc---CCCceEEcCCCCh
Q 036761 255 KEKKFVLLLDDVWQR-------VAF------TTVGVPIPPR-DKSASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSA 315 (897)
Q Consensus 255 ~~~~~LlVlDdv~~~-------~~~------~~~~~~l~~~-~~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~ 315 (897)
..-+++|.||.++.. ..| .++..-+... ...|.-||-.|..+++.. .+ .-+...-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 567999999999642 111 1111111111 122367787787776621 11 2245677788888
Q ss_pred HHHHHHHHHHhCC--CccCCCCcHHHHHHHHHHHcCCc
Q 036761 316 NDARELFRQNVGE--ETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 316 ~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
+|-.++++..+.. .....+-++.+++.. .+|.|.
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 9999999988863 222344456666553 345554
No 263
>PRK06696 uridine kinase; Validated
Probab=96.36 E-value=0.0046 Score=62.54 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 159 GMQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.|++.+++|.+.+.. +...+|+|.|.+|+||||||+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 466777788777753 5678999999999999999999998773
No 264
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.36 E-value=0.014 Score=59.72 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=56.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC-CEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHH---
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF-DFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLA--- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~--- 244 (897)
..-..++|.|.+|+|||||++.+++... .+| +.++++-+++.. .+.++.+.+...=.+.... ..++...
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~--~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 3557899999999999999999999874 334 556667776654 4555666655432111100 0111111
Q ss_pred ---HHHHHHHHHh---ccCceEEEEeccc
Q 036761 245 ---ERAVDIYNVL---KEKKFVLLLDDVW 267 (897)
Q Consensus 245 ---~~~~~l~~~l---~~~~~LlVlDdv~ 267 (897)
...-.+-+++ +++.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 1122234444 3889999999984
No 265
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.22 Score=54.76 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+|.++|..|+||||+|..++...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887664
No 266
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.30 E-value=0.011 Score=57.26 Aligned_cols=36 Identities=22% Similarity=0.420 Sum_probs=28.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEE
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWV 212 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 212 (897)
...+|.|+|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l--~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL--KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEE
Confidence 45699999999999999999999887 3445555554
No 267
>PRK04296 thymidine kinase; Provisional
Probab=96.28 E-value=0.0057 Score=59.99 Aligned_cols=113 Identities=14% Similarity=0.059 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKE 256 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (897)
.++.|+|+.|.||||+|..++.+.. .+...++.+. ..++.......++..++...........++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999999988773 2333344442 1112222233455555543322112234445555544 333
Q ss_pred CceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChh
Q 036761 257 KKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 257 ~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+.-+||+|.+.- .++..++...+ ...+ ..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g-~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLG-IPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcC-CeEEEEecCcc
Confidence 556899999843 22222222221 1233 78999988843
No 268
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.27 E-value=0.03 Score=59.33 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh-------ccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ----GDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW-------MKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~ 243 (897)
..+++-|+|++|+|||+|+.+++-..... ..-..++||+....++.+.+.+ ++++++...+.. ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 45799999999999999998876433211 1225789999998888887754 566666533210 11123
Q ss_pred HHHH---HHHHHHhc-cCceEEEEecc
Q 036761 244 AERA---VDIYNVLK-EKKFVLLLDDV 266 (897)
Q Consensus 244 ~~~~---~~l~~~l~-~~~~LlVlDdv 266 (897)
++.. ..+...+. ++.-|||+|.+
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 3332 33333333 34457888887
No 269
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.23 E-value=0.02 Score=60.04 Aligned_cols=88 Identities=22% Similarity=0.286 Sum_probs=49.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..++++|+|++|+||||++..++.....+..-..+..++..... ...+.+....+.++.+.. ...+...+...+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~- 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR- 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH-
Confidence 45799999999999999999988776322111345555544321 223344444555554432 12233444444433
Q ss_pred hccCceEEEEecc
Q 036761 254 LKEKKFVLLLDDV 266 (897)
Q Consensus 254 l~~~~~LlVlDdv 266 (897)
+.+ .=+|++|..
T Consensus 270 ~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 LRD-KDLILIDTA 281 (282)
T ss_pred ccC-CCEEEEeCC
Confidence 333 347777753
No 270
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.21 E-value=0.022 Score=54.40 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
++.|+|.+|+||||++..++.... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEECCcchH
Confidence 468999999999999999988773 3446778887765543
No 271
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.20 E-value=0.0027 Score=60.67 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhc-cccHHHHHHHHHHHhc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWM-KKNLAERAVDIYNVLK 255 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~~l~ 255 (897)
.++.|.|.+|+||||+|..+..... . ..+++.-....+. +..+.|..........+. -+....+...+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~--~---~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG--L---QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC--C---CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 3689999999999999999987642 1 2344444443333 333344322211121221 1122234444444333
Q ss_pred cCceEEEEecc
Q 036761 256 EKKFVLLLDDV 266 (897)
Q Consensus 256 ~~~~LlVlDdv 266 (897)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888987
No 272
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0073 Score=71.51 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=37.4
Q ss_pred CCCccchHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.++.++.|.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999988887752 124578999999999999999998876
No 273
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.18 E-value=0.029 Score=61.95 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchh-ccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSW-MKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (897)
...+|.++|.+|+||||.|..++...... .+ .+..|++... +...+.+..++.+++.+.... ...+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999998877432 22 3444443321 223455666777776543211 11233333333333
Q ss_pred HhccCceEEEEecc
Q 036761 253 VLKEKKFVLLLDDV 266 (897)
Q Consensus 253 ~l~~~~~LlVlDdv 266 (897)
.+.+. -+||+|..
T Consensus 172 ~~~~~-DvVIIDTA 184 (437)
T PRK00771 172 KFKKA-DVIIVDTA 184 (437)
T ss_pred HhhcC-CEEEEECC
Confidence 33333 46777776
No 274
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.2 Score=57.30 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=94.3
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
+++=|-++.+.+|.+-+.- .+.+-|.++|++|.|||-+|++|+.... .-|++|..+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----H
Confidence 5666888888888876542 1356788999999999999999998762 234444432 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc-----------ccc----cc---cccCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-----------AFT----TV---GVPIPPRDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------~~~----~~---~~~l~~~~~ 284 (897)
++... ...+++.+.+.+.+.=..++++|.||.++... ..+ ++ ...+.++..
T Consensus 741 LLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s 809 (953)
T KOG0736|consen 741 LLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSS 809 (953)
T ss_pred HHHHH-----------hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCC
Confidence 11111 22344444444555555689999999996521 011 11 122233222
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHH-HHHhCCCccCCCCcHHHHHHHHHHHcC
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELF-RQNVGEETLNGHPDIRELSETVTKECG 349 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf-~~~~~~~~~~~~~~~~~~~~~i~~~~~ 349 (897)
.+.-||-.|..++... .+ +-++.+.+++=+.+++..=. +.....-....+-+ ..+|+++|.
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp 876 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCP 876 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCC
Confidence 2256776777665521 12 22455677777777765433 32221111122233 356677775
No 275
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.044 Score=63.83 Aligned_cols=157 Identities=18% Similarity=0.240 Sum_probs=89.1
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCC----CEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF----DFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
++.+||+++++++++.|....-.--.++|.+|+|||++|.-++.+.....-. +..++. -++..-
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s------------LD~g~L 237 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS------------LDLGSL 237 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE------------ecHHHH
Confidence 5689999999999999976332233478999999999988888776321111 111111 011111
Q ss_pred hCCCCchhccccHHHHHHHHHHHhc-cCceEEEEeccccccc--------cccccccCCCCCCCCcEEE-EecCChhH--
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLK-EKKFVLLLDDVWQRVA--------FTTVGVPIPPRDKSASKVV-FTTRSTEV-- 298 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~~--------~~~~~~~l~~~~~~~s~ii-vTtR~~~v-- 298 (897)
..... .....++....+.+.++ ..+..|.+|.+..... .+.-...-|.-..|.-++| .||-++.-
T Consensus 238 vAGak---yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 238 VAGAK---YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred hcccc---ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 11111 33455666666665554 4489999999864211 1111111111122324555 44444321
Q ss_pred ----hhhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 299 ----CGWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 299 ----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
+......+.+.++..+.+++...++...
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1222345678999999999999887654
No 276
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.21 Score=52.41 Aligned_cols=166 Identities=13% Similarity=0.064 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcc--------cCCCCCCEEEEEEe-CCcCCHHHHHHHHHHHhCC
Q 036761 164 LDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKF--------LGQGDFDFLIWVVV-SKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 164 ~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~ 233 (897)
++.+.+.+..+.. ++..++|..|.||+++|..+.+.. ....|-+.+.++.. +....++++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 4555566655544 566799999999999999987775 11222223333321 2222333322 23333221
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCC-hhHhh-hcCCCceEE
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRS-TEVCG-WMGAHKNFE 309 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~-~~v~~-~~~~~~~~~ 309 (897)
.. .-.+.+=++|+|++... .....+...+...... +.+|++|.+ ..+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~-t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKD-TYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCC-eEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 01146678888998643 2334444444444444 667765544 33332 233467799
Q ss_pred cCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 310 VGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 310 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
+.+++.++..+.+... +.+ ++.+..++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~~~--------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-NKE--------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-CCC--------hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877664 211 13356666666763344444
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.08 E-value=0.024 Score=62.41 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=49.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchh-ccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSW-MKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 252 (897)
...++.++|.+|+||||.|..++.....+.. ..++-|++... +...+.+...+...+.+.... ...++.++.....+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 4679999999999999999888877521122 23344443321 122334445555555442211 12234444433333
Q ss_pred HhccCce-EEEEeccc
Q 036761 253 VLKEKKF-VLLLDDVW 267 (897)
Q Consensus 253 ~l~~~~~-LlVlDdv~ 267 (897)
.+..+.+ ++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3434444 66667653
No 278
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.017 Score=62.62 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=35.9
Q ss_pred CCccchH---HHHHHHHHhccC--------C-ceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 156 PTVGMQS---QLDKVWSCLVEE--------P-VGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 156 ~~vGr~~---~~~~l~~~L~~~--------~-~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.-|.|+ |+++|+++|.+. + .+-|.++|++|.|||-||++++-...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 4457765 556777888763 2 45788999999999999999998874
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.07 E-value=0.04 Score=56.28 Aligned_cols=49 Identities=18% Similarity=0.146 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (897)
...++.|.|.+|+|||++|.++..... ..-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 568999999999999999998765542 2346788888765 445555543
No 280
>PRK10867 signal recognition particle protein; Provisional
Probab=96.05 E-value=0.025 Score=62.32 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....+|.++|.+|+||||.|..++....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999998888877653
No 281
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.04 E-value=0.21 Score=49.97 Aligned_cols=209 Identities=14% Similarity=0.159 Sum_probs=114.5
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccC----CCCCCEEEEEEeCCc----------C--
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLG----QGDFDFLIWVVVSKD----------L-- 218 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~----------~-- 218 (897)
....++++..+++.+....++.+-..++|+.|.||-|.+..+.+..-. +-.-+..-|.+.+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 346788888888888777677899999999999999877766655432 222244445443322 1
Q ss_pred ---------CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCce-EEEEecccc--ccccccccccCCCCCCCC
Q 036761 219 ---------QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKF-VLLLDDVWQ--RVAFTTVGVPIPPRDKSA 286 (897)
Q Consensus 219 ---------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~--~~~~~~~~~~l~~~~~~~ 286 (897)
.-+.+.+++++...-... + +.-..+.| ++|+-.++. .+....++.....-...
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~- 157 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN- 157 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC-
Confidence 111222333332221100 0 00112344 455555543 22223332222221222
Q ss_pred cEEEEecCChh-H-hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhc
Q 036761 287 SKVVFTTRSTE-V-CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMAC 364 (897)
Q Consensus 287 s~iivTtR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~ 364 (897)
+|+|+...+.. + ...-...-.++++..+++|....+++.+..+....+ ++++.+|+++++|.---...+-..++-
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 67766544321 1 111112235799999999999999998866653333 678999999998875433333222221
Q ss_pred C----------CChHHHHHHHHHHccc
Q 036761 365 K----------KTPEEWRDAIKVLQTS 381 (897)
Q Consensus 365 ~----------~~~~~w~~~~~~l~~~ 381 (897)
+ -..-+|+-++..+...
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHH
Confidence 1 1346798887766554
No 282
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.083 Score=60.72 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=88.0
Q ss_pred CCccchHHHHHHHHHhc---c----------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 156 PTVGMQSQLDKVWSCLV---E----------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~----------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
+..|.+...+.+.+.+. . ...+.+.++|++|.|||.||+++++.. ...|-.+.+- +
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~--~~~fi~v~~~---------~ 311 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES--RSRFISVKGS---------E 311 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC--CCeEEEeeCH---------H
Confidence 34566666655554332 1 245689999999999999999999965 4444333211 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccccc-------------cccccCC--CCCCCCc
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFT-------------TVGVPIP--PRDKSAS 287 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~-------------~~~~~l~--~~~~~~s 287 (897)
+.. .+...+...+...+...-+..+..|.+|+++....+. .+...+. ....+ .
T Consensus 312 ----l~s-------k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~-v 379 (494)
T COG0464 312 ----LLS-------KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG-V 379 (494)
T ss_pred ----Hhc-------cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc-e
Confidence 110 0122333444444455556789999999996432211 1112221 11222 4
Q ss_pred EEEEecCChhHhh---hc--CCCceEEcCCCChHHHHHHHHHHhCCC
Q 036761 288 KVVFTTRSTEVCG---WM--GAHKNFEVGCLSANDARELFRQNVGEE 329 (897)
Q Consensus 288 ~iivTtR~~~v~~---~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~ 329 (897)
.||-||-.+.... .. .-...+.++.-+.++..+.|+.+....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 4566665554322 11 235678999999999999999998643
No 283
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.03 E-value=0.0083 Score=59.34 Aligned_cols=109 Identities=13% Similarity=0.143 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH-HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE-KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
++|.|+|+.|+||||++..+..... ......++.- .++.... .-...+..+-. ...+.......++..++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~--~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN--KNKTHHILTI-EDPIEFVHESKRSLINQRE------VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh--hcCCcEEEEE-cCCccccccCccceeeecc------cCCCccCHHHHHHHHhc
Confidence 5789999999999999998877662 2233333322 2211100 00000111100 01112334556777787
Q ss_pred cCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhH
Q 036761 256 EKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEV 298 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v 298 (897)
..+=++++|++.+.+......... ..| ..++.|+-...+
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G-~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETG-HLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcC-CEEEEEecCCcH
Confidence 778899999997766554433222 223 457777766554
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.007 Score=55.17 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCC
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQ 203 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 203 (897)
..-|.|.|++|+||||+++.+.+..+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3468999999999999999999888533
No 285
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.02 E-value=0.0026 Score=37.36 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=9.1
Q ss_pred CCEeeccCCCccccChhhh
Q 036761 593 LQHLDLSGTAIRELPKELN 611 (897)
Q Consensus 593 L~~L~L~~~~i~~lp~~i~ 611 (897)
|++|+|++|+|+.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444433
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.02 E-value=0.018 Score=63.50 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=40.4
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD 207 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 207 (897)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.........|.
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 45799999999998887543 5678999999999999999998653233443
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.01 E-value=0.018 Score=56.17 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=45.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
.+.+|+|.|.+|+||||+|+.++.... ... +.-++-...+. ..-.....+......+.....+.+-+...|...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~--~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG--VEK--VVVISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC--cCc--ceEeecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 457999999999999999999999884 221 11122111111 1111111112222222334556677778888888
Q ss_pred ccCc
Q 036761 255 KEKK 258 (897)
Q Consensus 255 ~~~~ 258 (897)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 8887
No 288
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.99 E-value=0.022 Score=55.03 Aligned_cols=88 Identities=22% Similarity=0.168 Sum_probs=45.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCch-hccccHHHHH-HHHHHHh
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS-WMKKNLAERA-VDIYNVL 254 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l~~~l 254 (897)
++.++|++|+||||++..++...... -..++.+..... ....+.+...+...+.+-.. ....+..+.. ..+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 68899999999999999998876422 123444443321 12233344444444432110 1112333333 3333333
Q ss_pred ccCceEEEEeccc
Q 036761 255 KEKKFVLLLDDVW 267 (897)
Q Consensus 255 ~~~~~LlVlDdv~ 267 (897)
.+..-++|+|..-
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4344356677653
No 289
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.015 Score=65.12 Aligned_cols=73 Identities=26% Similarity=0.257 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL--QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
..+-|.|.|+.|+|||+||+++++... +.....+.+++++.-. ..+.+++.+ ...+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-------------------~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-------------------NNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-------------------HHHHHH
Confidence 345789999999999999999999886 5555666677766421 122222221 122334
Q ss_pred HhccCceEEEEeccc
Q 036761 253 VLKEKKFVLLLDDVW 267 (897)
Q Consensus 253 ~l~~~~~LlVlDdv~ 267 (897)
.+...+-+|||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 556678999999995
No 290
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.98 E-value=0.032 Score=59.57 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=43.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC----CCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG----QGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
...++-|+|.+|+|||+|+.+++-.... ...-..++||+....|....+.+ +++.++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4578899999999999999988643321 11225789999999888888755 56666654
No 291
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.98 E-value=0.034 Score=53.46 Aligned_cols=123 Identities=18% Similarity=0.105 Sum_probs=63.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc---CCC---CCC--EEEEEEeCCcCCHHHHHHHHHHHhCCCCc---h-hcccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL---GQG---DFD--FLIWVVVSKDLQIEKIQEIIGKKVGLFND---S-WMKKN 242 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~---~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~ 242 (897)
.-.+++|+|+.|+|||||.+.+..+.- ... .|. .+.|+ .+ .+.++.+++... . ...-+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 457899999999999999998863210 010 110 12232 21 345566664321 0 11111
Q ss_pred -HHHHHHHHHHHhccC--ceEEEEecccc---ccccccccccCCCC-CCCCcEEEEecCChhHhhhcCCCceEEc
Q 036761 243 -LAERAVDIYNVLKEK--KFVLLLDDVWQ---RVAFTTVGVPIPPR-DKSASKVVFTTRSTEVCGWMGAHKNFEV 310 (897)
Q Consensus 243 -~~~~~~~l~~~l~~~--~~LlVlDdv~~---~~~~~~~~~~l~~~-~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (897)
-+...-.+.+.+-.+ +=++++|+.-. ......+...+... ..+ ..||++|.+.+.... .+..+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG-NTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHh--CCEEEEE
Confidence 122333455556566 77888898743 22222222222111 134 568888888766532 3444444
No 292
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.98 E-value=0.012 Score=58.09 Aligned_cols=189 Identities=19% Similarity=0.106 Sum_probs=89.3
Q ss_pred ccCccCCCEeeccCCCcc-ccCh----hhhcCCcCcEecCCCCccccccChhhhh-------------cCCccceeeccc
Q 036761 587 ISVLVSLQHLDLSGTAIR-ELPK----ELNALENLQCLNLEETHFLITIPRQLIS-------------SFSSLIVLRMFG 648 (897)
Q Consensus 587 i~~L~~L~~L~L~~~~i~-~lp~----~i~~L~~L~~L~L~~~~~l~~lp~~~~~-------------~l~~L~~L~l~~ 648 (897)
+-+|++|+..+||.|-+. +.|+ -+++-++|.||.+++|. ++.+..+-++ +-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 445666666666666444 2332 24555666666666664 2333221121 234444444433
Q ss_pred cCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccH--HHH-HhchhccccceeEEEeccCCCcccc---c
Q 036761 649 VGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDL--QCV-LKSKELRRCTQALYLYSFKRSEPLD---V 722 (897)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~-~~~~~~~~~L~~L~L~~~~~~~~~~---~ 722 (897)
|..... ........+....+|+.+.+..|.+..- ..+ ......+.+|+.|+|.+|....... .
T Consensus 167 NRleng-----------s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 167 NRLENG-----------SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred chhccC-----------cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 322110 0011223344445677777777765421 111 1122234567777777664311111 0
Q ss_pred ccccccCCCCceeeeecCCccEEEec-----ccCcCCCCccEEEEeCCCCCCC------Cccc--ccCCCccEEEEecC
Q 036761 723 SALAGLKHLNRLWIHECEELEELEMA-----RQPFDFRSLKKIQIYGCHRLKD------LTFL--LFAPNLKSIEVSSC 788 (897)
Q Consensus 723 ~~l~~l~~L~~L~l~~~~~l~~l~~~-----~~~~~l~~L~~L~L~~c~~l~~------l~~l--~~l~~L~~L~L~~c 788 (897)
..++..+.|+.|.+.+|-.... ... ..-...|+|..|...+|..-.. ++.+ ..+|-|..|.+.+|
T Consensus 236 ~al~~W~~lrEL~lnDClls~~-G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNE-GVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHhcccchhhhccccchhhccc-cHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 1355567788888888732211 100 0023467888888777643221 1111 23556666666553
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.95 E-value=0.035 Score=60.22 Aligned_cols=84 Identities=20% Similarity=0.358 Sum_probs=50.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
...++.|.|.+|+|||||+.+++.... .....++|++.... ..++ ..-++.++...+.. ...+.+.+...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 457999999999999999999987763 22356778876543 3333 22244555433221 1123333333332
Q ss_pred HHhccCceEEEEecc
Q 036761 252 NVLKEKKFVLLLDDV 266 (897)
Q Consensus 252 ~~l~~~~~LlVlDdv 266 (897)
..+.-++|+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 294
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.93 E-value=0.064 Score=57.49 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=42.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCC----CCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD----FDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
...++-|+|++|+|||+++.+++-....... -..++||+....++...+.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 4679999999999999999998765422111 14799999988888777654 3444543
No 295
>PRK06547 hypothetical protein; Provisional
Probab=95.92 E-value=0.011 Score=56.76 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=27.9
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 167 VWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 167 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344445678899999999999999999998865
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.92 E-value=0.029 Score=60.44 Aligned_cols=89 Identities=21% Similarity=0.280 Sum_probs=52.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
...+++++|+.|+||||++.+++.....+.....+..++... .....+.++...+.++.+... ..+..++...+ ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~~ 212 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-AE 212 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-HH
Confidence 457999999999999999999988753222223555555332 224556666667777764421 12222233333 33
Q ss_pred hccCceEEEEeccc
Q 036761 254 LKEKKFVLLLDDVW 267 (897)
Q Consensus 254 l~~~~~LlVlDdv~ 267 (897)
+.++ -++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4444 456688874
No 297
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.91 E-value=0.069 Score=62.89 Aligned_cols=170 Identities=14% Similarity=0.127 Sum_probs=88.7
Q ss_pred CCccchHHHHHHHH---Hhcc---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHH
Q 036761 156 PTVGMQSQLDKVWS---CLVE---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKI 223 (897)
Q Consensus 156 ~~vGr~~~~~~l~~---~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (897)
++.|.+..++++.+ ++.. .-.+-|.|+|++|+|||++|+.++... ...| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 34576665555544 3322 113458999999999999999998876 2232 2222221 1
Q ss_pred HHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc------------c----ccccccCCC-CCCCC
Q 036761 224 QEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA------------F----TTVGVPIPP-RDKSA 286 (897)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~------------~----~~~~~~l~~-~~~~~ 286 (897)
.. .. .......+...+...-...+.+|++|+++.... . ..+...+.. ....+
T Consensus 222 ~~----~~-------~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 222 VE----MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HH----hh-------hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 00 011122222333333345688999999864210 1 111111110 11122
Q ss_pred cEEEEecCChhHhhh--c---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 287 SKVVFTTRSTEVCGW--M---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 287 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.-||.||...+.... . .-+..+.++..+.++-.++++.+..........+ ...+++.+.|.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 556668877664221 1 2345688888888888888888775433222222 23456666553
No 298
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.89 E-value=0.049 Score=57.88 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=41.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC---CC-CCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG---QG-DFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
...++.|+|.+|+|||||+..++..... .+ .-..++|++....+....+ ..+++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 5679999999999999999988753321 11 1236799998887777763 4455655543
No 299
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.89 E-value=0.019 Score=54.74 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
++.|.|.+|+|||++|.++.... ...++++.-...++.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~e 39 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDDE 39 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCHH
Confidence 36799999999999999987652 2456777766666553
No 300
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.86 E-value=0.017 Score=52.66 Aligned_cols=102 Identities=17% Similarity=0.289 Sum_probs=42.4
Q ss_pred ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCCccccCh-hhhcCCc
Q 036761 538 VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIRELPK-ELNALEN 615 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~ 615 (897)
+.+|++|+.+.+. . .+..++...|.+++.|+.+.+.++ +..++. .+.++.+|+.+.+.+ .+..++. .+..+++
T Consensus 8 F~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455555555554 2 355555555666666666666553 333332 344555566666644 3444433 2444566
Q ss_pred CcEecCCCCccccccChhhhhcCCccceeecc
Q 036761 616 LQCLNLEETHFLITIPRQLISSFSSLIVLRMF 647 (897)
Q Consensus 616 L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~ 647 (897)
|+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 83 l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 666666443 244444445554 55555544
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.85 E-value=0.052 Score=55.46 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=55.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-----------------
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS----------------- 237 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------- 237 (897)
...++.|+|.+|+|||++|.++..... ..-..++|++.... ..++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~--~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL--KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH--hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 567999999999999999999865541 23467888888654 44555543 333322110
Q ss_pred -hccccHHHHHHHHHHHhcc-CceEEEEeccc
Q 036761 238 -WMKKNLAERAVDIYNVLKE-KKFVLLLDDVW 267 (897)
Q Consensus 238 -~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 267 (897)
....+.+.....+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 55588889874
No 302
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.84 E-value=0.027 Score=51.48 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=35.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (897)
+|.|-|++|+||||+|+.++++.. -.| + +...++++|++..+++-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cce-----e------eccHHHHHHHHHcCCCH
Confidence 689999999999999999999872 111 1 34478899999888754
No 303
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.84 E-value=0.23 Score=52.72 Aligned_cols=49 Identities=24% Similarity=0.212 Sum_probs=34.9
Q ss_pred eEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 307 NFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 307 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
++++++++.+|+..++.-............-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887755442222333455667777779988543
No 304
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.82 E-value=0.019 Score=52.25 Aligned_cols=115 Identities=18% Similarity=0.334 Sum_probs=63.5
Q ss_pred cccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCE
Q 036761 519 WENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQH 595 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~ 595 (897)
..+++.+.+.. .+..++ .+..+++|+.+.+. . .+..++...|.+++.|+.+.+.++ +..++ ..+..+.+|+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~-~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFP-N-NLTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEES-S-TTSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccc-c-cccccceeeeeccccccccccccc--ccccccccccccccccc
Confidence 34677777663 455554 36788899999987 4 488889888999999999999764 44444 34667999999
Q ss_pred eeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccc
Q 036761 596 LDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLI 642 (897)
Q Consensus 596 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 642 (897)
+++..+ ++.++.. +.+. +|+.+.+..+ +..++...+.++++|+
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 999765 7766554 6666 9999988764 4677877788877764
No 305
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.81 E-value=0.02 Score=59.43 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=37.1
Q ss_pred cchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHH--hcccCCCCCCEEE
Q 036761 159 GMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLH--NKFLGQGDFDFLI 210 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~--~~~~~~~~f~~~~ 210 (897)
+|..+-.--+++|.++++..|.+.|.+|+|||-||-+.. +-. .++.|..++
T Consensus 228 prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~-e~~~y~Kii 280 (436)
T COG1875 228 PRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVL-ERKRYRKII 280 (436)
T ss_pred cccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHH-HHhhhceEE
Confidence 566666666788999999999999999999998876543 322 245555443
No 306
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.75 E-value=0.047 Score=53.87 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=45.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCC---EEEEEEeCCcCCHHHHHHHHHHHh--CCCCchhccccHHHHHHHHHH
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFD---FLIWVVVSKDLQIEKIQEIIGKKV--GLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~~~~~~l~~ 252 (897)
||+|.|.+|+||||+|+.+...... .... ....+.............. .... .........-+.+.+...|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999988742 2222 2333333322222222211 1111 111122244566777777777
Q ss_pred HhccCceEE
Q 036761 253 VLKEKKFVL 261 (897)
Q Consensus 253 ~l~~~~~Ll 261 (897)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666666433
No 307
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=2.4 Score=41.88 Aligned_cols=45 Identities=29% Similarity=0.348 Sum_probs=35.5
Q ss_pred CCccchHHHHHHHHHhc-------------cCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLV-------------EEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++-|.+-.++++.+... -+..+-|.++|++|.|||-||++|+++-
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 34577777777766543 1467788999999999999999999986
No 308
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.69 E-value=0.033 Score=58.77 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.....++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999987
No 309
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.05 Score=58.24 Aligned_cols=89 Identities=20% Similarity=0.210 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..++|+|+|++|+||||++..++.....+ . ..+..++..... ...+-++..++.++.+.. ...+...+...+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHHH
Confidence 35799999999999999999998766322 2 234445443221 233334445555554321 223555555555443
Q ss_pred hcc-CceEEEEeccc
Q 036761 254 LKE-KKFVLLLDDVW 267 (897)
Q Consensus 254 l~~-~~~LlVlDdv~ 267 (897)
-.. +.=++++|-.-
T Consensus 316 k~~~~~DvVLIDTaG 330 (436)
T PRK11889 316 KEEARVDYILIDTAG 330 (436)
T ss_pred HhccCCCEEEEeCcc
Confidence 322 23467778763
No 310
>PHA00729 NTP-binding motif containing protein
Probab=95.68 E-value=0.014 Score=57.85 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 167 VWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 167 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444555566679999999999999999999875
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.67 E-value=0.049 Score=54.83 Aligned_cols=126 Identities=14% Similarity=0.093 Sum_probs=72.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-----cCCHHHHHHHHHHHhCCCCchh-----ccccH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-----DLQIEKIQEIIGKKVGLFNDSW-----MKKNL 243 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~-----~~~~~ 243 (897)
....+++|+|..|+||||+++.+..=.. -. .+.+++.-.+ .....+-..++++.+++..+.. .-..-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~--pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE--PT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC--CC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 3567999999999999999999987652 22 2333332111 1223344566677777543211 11122
Q ss_pred HHHHHHHHHHhccCceEEEEeccccccc------cccccccCCCCCCCCcEEEEecCChhHhhhcCC
Q 036761 244 AERAVDIYNVLKEKKFVLLLDDVWQRVA------FTTVGVPIPPRDKSASKVVFTTRSTEVCGWMGA 304 (897)
Q Consensus 244 ~~~~~~l~~~l~~~~~LlVlDdv~~~~~------~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~~ 304 (897)
+...-.+.+.+.-++-++|.|..-...+ ...+...+.. ..+ -..++.|-+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~-lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELG-LTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhC-CeEEEEEEEHHhhhhhcc
Confidence 3333456778888999999998643211 1111111111 123 567788888777665533
No 312
>PRK04328 hypothetical protein; Provisional
Probab=95.67 E-value=0.049 Score=56.00 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=31.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD 217 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 217 (897)
.-.++.|.|.+|+|||+||.++.... ...-...+|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 56799999999999999999876654 223466788887663
No 313
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.069 Score=56.63 Aligned_cols=94 Identities=19% Similarity=0.372 Sum_probs=57.9
Q ss_pred HHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---c
Q 036761 165 DKVWSCLVEE--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---M 239 (897)
Q Consensus 165 ~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~ 239 (897)
.++-+.|..+ .-.+|.|-|-+|+|||||.-+++.+...+. .+++|+-.+. ..+ .+--++.++.+.+.. .
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l~a 153 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYLLA 153 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HHH-HHHHHHHhCCCccceEEeh
Confidence 3444444433 347999999999999999999999885333 6777765543 222 233456666544321 1
Q ss_pred cccHHHHHHHHHHHhccCceEEEEeccc
Q 036761 240 KKNLAERAVDIYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 267 (897)
..+.+.+...+. +.++-++|+|-+.
T Consensus 154 Et~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 154 ETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred hcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 223333333332 3678899999984
No 314
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.66 E-value=1 Score=48.67 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=40.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc--CCHHHHHHHHHHHhCCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD--LQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~ 235 (897)
...||..+|.-|.||||-|-.+++..+. ....+-+...+. +-..+.++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 4689999999999999999999888853 222222333333 344566778888887653
No 315
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.66 E-value=0.071 Score=50.49 Aligned_cols=117 Identities=19% Similarity=0.150 Sum_probs=61.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEE---EEEeCCcCCHHHHHHHHHHHhCC--CCc--hhcccc------
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLI---WVVVSKDLQIEKIQEIIGKKVGL--FND--SWMKKN------ 242 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l~~--~~~--~~~~~~------ 242 (897)
...|-|++..|.||||.|..++-+.. .+--.++ |+.-........++..+ .+.. ... .+...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 46888999999999999998877763 2222333 33323223444444332 1100 000 011111
Q ss_pred -HHHHHHHHHHHhccC-ceEEEEecccc-----ccccccccccCCCCCCCCcEEEEecCChh
Q 036761 243 -LAERAVDIYNVLKEK-KFVLLLDDVWQ-----RVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 243 -~~~~~~~l~~~l~~~-~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
..+.....++.+... -=++|||.+-. ..+.+.+...+.....+ .-||+|-|+..
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~-~evVlTGR~~p 141 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGH-QHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCC-CEEEEECCCCC
Confidence 112223334444444 45999999843 22333444444444444 79999999863
No 316
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.66 E-value=0.0085 Score=54.62 Aligned_cols=22 Identities=36% Similarity=0.748 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 317
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.1 Score=51.46 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.-|-.++++++.+...- +..+-|.++|++|.|||-+|++|+|+-
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 345778888888775532 356778999999999999999999986
No 318
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.64 E-value=0.047 Score=53.05 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC--chh----------ccc-
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN--DSW----------MKK- 241 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--~~~----------~~~- 241 (897)
.-.+++|.|+.|.|||||++.++.-... -...+++.-. ++......+...++... ... ..-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 5578999999999999999999876532 1223332211 11111111111111100 000 001
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccccc---ccccccccCCCCCCCCcEEEEecCChhHhhhcCCCceEEc
Q 036761 242 NLAERAVDIYNVLKEKKFVLLLDDVWQRV---AFTTVGVPIPPRDKSASKVVFTTRSTEVCGWMGAHKNFEV 310 (897)
Q Consensus 242 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (897)
.-+...-.+.+.+-.++-++++|+....- ..+.+...+.....+ ..||++|.+.+.... .+..+.+
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD-KTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCC-CEEEEEecCHHHHHh--CCEEEEE
Confidence 11223334556666788899999985422 222222222111224 678888888766542 3444443
No 319
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.60 E-value=0.039 Score=56.95 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=52.4
Q ss_pred HHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh-----ccc
Q 036761 167 VWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW-----MKK 241 (897)
Q Consensus 167 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~ 241 (897)
..+++...+..+|.|+|.+|+|||||+..+.+... ..... +.+ ..+..+..+ ...++..+.+.-.. -..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~--~~~~~-~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK--DSVPC-AVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc--cCCCE-EEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 33444456789999999999999999999998863 22322 222 222222222 22234443322110 111
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccc
Q 036761 242 NLAERAVDIYNVLKEKKFVLLLDDVWQ 268 (897)
Q Consensus 242 ~~~~~~~~l~~~l~~~~~LlVlDdv~~ 268 (897)
+...+...+........=++|++++-+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 223344445444444446778899854
No 320
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.27 Score=57.04 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=100.3
Q ss_pred CCCccchHHHHHH---HHHhccC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKV---WSCLVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l---~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.++.|.|+.+++| +++|..+ -++-|.++|++|+|||-||++++-...+ -|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeeechH-----
Confidence 4567887765555 5566542 3567889999999999999999988732 23444432
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEeccccccc-----------------cccccccCCC-CC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRVA-----------------FTTVGVPIPP-RD 283 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~-----------------~~~~~~~l~~-~~ 283 (897)
+..+.+... . ...+..+.... ...+.++.+|+++...- +.++...+.. ..
T Consensus 379 ---EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 122222111 0 22233333333 34578888898854211 1111111110 01
Q ss_pred CCCcEEEEecCChhHhhh--c---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 284 KSASKVVFTTRSTEVCGW--M---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 284 ~~~s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
.++.-++-+|+..++... + .-+..+.++.-+.....++|.-++...... .+..++.+ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 122445566776666221 1 224568888888899999999998655422 34456666 888888877553
No 321
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.59 E-value=0.097 Score=53.24 Aligned_cols=41 Identities=32% Similarity=0.313 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD 217 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 217 (897)
.-.++.|.|.+|+||||+|.+++.... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 567999999999999999998765442 23457788877543
No 322
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.58 E-value=0.016 Score=58.94 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+...+|+|.|+.|.|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999999998774
No 323
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.57 E-value=0.025 Score=52.35 Aligned_cols=43 Identities=33% Similarity=0.289 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~---~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--G---RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--T---CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--h---cceEEEEeccccccccceee
Confidence 6799999999999999999877 1 33455677887777776543
No 324
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.57 E-value=0.0099 Score=47.17 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 325
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.56 E-value=0.062 Score=55.27 Aligned_cols=90 Identities=21% Similarity=0.109 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHH---HHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLA---ERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~~~l~ 251 (897)
..+++=|+|+.|+||||+|.+++-.. +..-..++|++.-..+++..+..--...+..-. .....+.+ +.+..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a--q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~-v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA--QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLL-VSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh--hcCCCeEEEEeCCCCCCHHHHHHHHHhhhccee-EecCCCHHHHHHHHHHHH
Confidence 56789999999999999999987666 455558999999998888776543332121100 01122222 3344444
Q ss_pred HHhccCceEEEEeccc
Q 036761 252 NVLKEKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~~~~~LlVlDdv~ 267 (897)
.....+--|+|+|.+-
T Consensus 136 ~~~~~~i~LvVVDSva 151 (279)
T COG0468 136 RSGAEKIDLLVVDSVA 151 (279)
T ss_pred HhccCCCCEEEEecCc
Confidence 4444456689999883
No 326
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.15 Score=50.12 Aligned_cols=53 Identities=28% Similarity=0.405 Sum_probs=40.6
Q ss_pred ccccCCCC---CCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 148 VADERPIE---PTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 148 ~~~~~~~~---~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++++|++ ++-|-++.++++++.+.- ...+-|..+|++|.|||-+|++.+..-
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 45666654 345889999999887631 245678899999999999999988765
No 327
>PRK07667 uridine kinase; Provisional
Probab=95.51 E-value=0.018 Score=56.70 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=29.0
Q ss_pred HHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 165 DKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 165 ~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.+.+.+.. +...+|+|.|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555543 4557999999999999999999998763
No 328
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.51 E-value=0.043 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45689999999999999999998765
No 329
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.067 Score=58.20 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=54.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC--CCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ--GDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 251 (897)
..++|.++|+.|+||||.+..++...... .+-..+..++..... .....++..++.++.+-. ...+.+++...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 45799999999999999999988766321 122345555554321 233346666776766432 2334455544444
Q ss_pred HHhccCceEEEEeccc
Q 036761 252 NVLKEKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~~~~~LlVlDdv~ 267 (897)
+. .+.-++++|.+.
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 43 345688888874
No 330
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.48 E-value=0.076 Score=56.82 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
...++-|+|.+|+||||++.+++-...... .-..++||+....++...+.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 467899999999999999999876653211 113799999988888776543 4455544
No 331
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.48 E-value=0.022 Score=54.32 Aligned_cols=114 Identities=17% Similarity=0.118 Sum_probs=60.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC--cCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK--DLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
.-.+++|+|..|.|||||.+.++.... .....+++.-.. ..+..+. ....++... +-..-+...-.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~---qLS~G~~qrl~lar 95 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVY---QLSVGERQMVEIAR 95 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEE---ecCHHHHHHHHHHH
Confidence 457899999999999999999987652 234444443111 1111111 111111100 11112233344556
Q ss_pred HhccCceEEEEeccccc---cccccccccCCCC-CCCCcEEEEecCChhH
Q 036761 253 VLKEKKFVLLLDDVWQR---VAFTTVGVPIPPR-DKSASKVVFTTRSTEV 298 (897)
Q Consensus 253 ~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~-~~~~s~iivTtR~~~v 298 (897)
.+-.++-++++|+.-.. .....+...+... ..+ ..||++|.+.+.
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~-~tiii~sh~~~~ 144 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQG-VAVIFISHRLDE 144 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHH
Confidence 66677888999997532 2222222222111 123 668888888664
No 332
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.48 E-value=0.033 Score=53.68 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.-.+++|+|+.|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 455799999999999999999998765
No 333
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.47 E-value=0.075 Score=55.85 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=54.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
.-+++-|+|+.|+||||||.++.... +..-..++||.....++.. .++++++..+.. .+.+.++......
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~--q~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA--QKQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh--hcccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 45799999999999999999988766 3345678999988776653 445556544321 2334455555555
Q ss_pred HHhccC-ceEEEEecccc
Q 036761 252 NVLKEK-KFVLLLDDVWQ 268 (897)
Q Consensus 252 ~~l~~~-~~LlVlDdv~~ 268 (897)
+.++.. --++|+|-|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 656543 45889999854
No 334
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.073 Score=56.78 Aligned_cols=89 Identities=21% Similarity=0.114 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..++++|+|+.|+||||++..++.....+ -..+.+++..... ...+.++..++.++.+.. ...+..++...+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHHH
Confidence 46799999999999999999988766322 2346666654332 234556666766665432 234555555555433
Q ss_pred hc-cCceEEEEeccc
Q 036761 254 LK-EKKFVLLLDDVW 267 (897)
Q Consensus 254 l~-~~~~LlVlDdv~ 267 (897)
-. +..=+|++|-.-
T Consensus 281 ~~~~~~D~VLIDTAG 295 (407)
T PRK12726 281 TYVNCVDHILIDTVG 295 (407)
T ss_pred HhcCCCCEEEEECCC
Confidence 21 344577778763
No 335
>PRK08233 hypothetical protein; Provisional
Probab=95.46 E-value=0.012 Score=57.40 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|.+|+||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 336
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.069 Score=55.48 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCH--HHHHHHHHHHhCCCCch-hccccHHHH-HHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQI--EKIQEIIGKKVGLFNDS-WMKKNLAER-AVD 249 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 249 (897)
...+++.++|++|+||||++..++.... ..-..+..+.... +.. .+-+...++..+.+.-. ....+.... ...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3568999999999999999999887763 2223555565442 322 23344455555533110 011222222 233
Q ss_pred HHHHhccCceEEEEeccc
Q 036761 250 IYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 250 l~~~l~~~~~LlVlDdv~ 267 (897)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 443333445578888763
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.014 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.|.+.|.+|+||||+|++++...+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 5688999999999999999998874
No 338
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.44 E-value=0.089 Score=50.36 Aligned_cols=115 Identities=14% Similarity=0.176 Sum_probs=59.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC-CCC--CC---EEEEEEeCCcCC--HHHHHHHHHHHhCCCCchhccccHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG-QGD--FD---FLIWVVVSKDLQ--IEKIQEIIGKKVGLFNDSWMKKNLAER 246 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~ 246 (897)
.-.+++|+|..|.|||||++.+...... .+. ++ .+.+ +.+... ...+...+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 5578999999999999999999876532 111 11 1222 222221 11233333210 110 11122333
Q ss_pred HHHHHHHhccCceEEEEeccccc---cccccccccCCCCCCCCcEEEEecCChhHh
Q 036761 247 AVDIYNVLKEKKFVLLLDDVWQR---VAFTTVGVPIPPRDKSASKVVFTTRSTEVC 299 (897)
Q Consensus 247 ~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iivTtR~~~v~ 299 (897)
.-.+.+.+-.++=++++|+--.. .....+...+... + ..||++|.+....
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~-~tiiivsh~~~~~ 151 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--G-ITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--C-CEEEEEeCChhHH
Confidence 44455666677788899987432 2222222222221 3 4577777776654
No 339
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.44 E-value=0.057 Score=52.93 Aligned_cols=45 Identities=24% Similarity=0.177 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
++.|.|++|+|||+||.++..... ..-..++|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877653 2235677887654 34444433
No 340
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.053 Score=58.82 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++.|+|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 341
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.40 E-value=0.013 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998776
No 342
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.39 E-value=0.06 Score=51.86 Aligned_cols=127 Identities=18% Similarity=0.175 Sum_probs=63.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC--cCCHHHHHHHHHHHhCC--CCchhcc--------c
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK--DLQIEKIQEIIGKKVGL--FNDSWMK--------K 241 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~--~~~~~~~--------~ 241 (897)
..-.+++|+|+.|.|||||.+.++.-... ..+.+++.-.. ....... ...++. +...... .
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 35579999999999999999999886532 23333322110 0011111 111110 0000000 0
Q ss_pred cHHHHHHHHHHHhccCceEEEEeccccc---cccccccccCCCCCCCCcEEEEecCChhHhhhcCCCceEEc
Q 036761 242 NLAERAVDIYNVLKEKKFVLLLDDVWQR---VAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWMGAHKNFEV 310 (897)
Q Consensus 242 ~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l 310 (897)
.-+...-.+.+.+-.++-++++|+-... ...+.+...+.....+ ..||++|.+.+.... .++.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~-~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG-KTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHh--CCEEEEE
Confidence 1122223355666678889999997532 2222222222111223 568888888766543 3444444
No 343
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.39 E-value=0.1 Score=55.80 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=43.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ----GDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
...++-|+|.+|+|||+|+..++-..... ..-..++|++....+..+.+. +|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 46789999999999999998887543211 112379999999988887764 456666543
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=95.36 E-value=0.1 Score=55.65 Aligned_cols=90 Identities=18% Similarity=0.150 Sum_probs=49.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC--HHHHHHHHHHHhCCCCch-hccccHHHHH-HHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ--IEKIQEIIGKKVGLFNDS-WMKKNLAERA-VDI 250 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~~-~~l 250 (897)
...+|.++|+.|+||||++..++..... ..+ .++.+. .+.+. ..+.++..+..++.+... ....+..... ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988888876642 223 333343 23332 334456667777654211 1122333322 222
Q ss_pred HHHhccCceEEEEeccc
Q 036761 251 YNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 251 ~~~l~~~~~LlVlDdv~ 267 (897)
...-....=++++|-.-
T Consensus 216 ~~~~~~~~DvVLIDTaG 232 (336)
T PRK14974 216 EHAKARGIDVVLIDTAG 232 (336)
T ss_pred HHHHhCCCCEEEEECCC
Confidence 22222222388889874
No 345
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.35 E-value=0.025 Score=55.93 Aligned_cols=124 Identities=17% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE----------------------eCCcC-------------
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV----------------------VSKDL------------- 218 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~----------------------~~~~~------------- 218 (897)
..-..|+|+|+.|+|||||...+..-.+. -...+++. +.|.+
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 34568999999999999999988654321 11111111 11111
Q ss_pred -----------CHHHHHHHHHHHhCCCCch-----hccccHHHHHHHHHHHhccCceEEEEecccc---c---ccccccc
Q 036761 219 -----------QIEKIQEIIGKKVGLFNDS-----WMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ---R---VAFTTVG 276 (897)
Q Consensus 219 -----------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~---~---~~~~~~~ 276 (897)
...+....+++.+++.... ..-..-++....+.+.+-..+-+|+-|+--. . .....+.
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1223344555555554211 0112234455567788888888999997521 1 1111221
Q ss_pred ccCCCCCCCCcEEEEecCChhHhhhc
Q 036761 277 VPIPPRDKSASKVVFTTRSTEVCGWM 302 (897)
Q Consensus 277 ~~l~~~~~~~s~iivTtR~~~v~~~~ 302 (897)
..+.. ..| ..||+.|.++.++...
T Consensus 186 ~~~~~-~~g-~tii~VTHd~~lA~~~ 209 (226)
T COG1136 186 RELNK-ERG-KTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHH-hcC-CEEEEEcCCHHHHHhC
Confidence 11111 223 7899999999998754
No 346
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.33 E-value=0.12 Score=61.85 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
+..++.|+|+.|.||||+.+.+.-.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHH
Confidence 4479999999999999999988654
No 347
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.32 E-value=0.06 Score=50.07 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..-.+++|+|..|.|||||++.+..... .....+|+.-.. .++.-. +-..-+...-.+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~-------------~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV-------------KIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE-------------EEEEEc---cCCHHHHHHHHHHHH
Confidence 3557899999999999999999987653 223334432100 000000 001112233345566
Q ss_pred hccCceEEEEecccc---ccccccccccCCCCCCCCcEEEEecCChhHhh
Q 036761 254 LKEKKFVLLLDDVWQ---RVAFTTVGVPIPPRDKSASKVVFTTRSTEVCG 300 (897)
Q Consensus 254 l~~~~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~ 300 (897)
+-.++-++++|+.-. ......+...+... + ..||++|.+.+...
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~-~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY--P-GTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHH
Confidence 667778899998743 22223332222221 2 45777887766543
No 348
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.30 E-value=0.042 Score=56.90 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch
Q 036761 158 VGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS 237 (897)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 237 (897)
.|...+..+.+..+......+|.|.|..|+||||+++.+.+... ..-..++.+.-........ + .++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~--~~~~~iitiEdp~E~~~~~----~-~q~~v~--- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN--TPEKNIITVEDPVEYQIPG----I-NQVQVN--- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC--CCCCeEEEECCCceecCCC----c-eEEEeC---
Confidence 45544444433433344567899999999999999998876652 1112233222111111100 0 111110
Q ss_pred hccccHHHHHHHHHHHhccCceEEEEecccccccccc
Q 036761 238 WMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTT 274 (897)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~ 274 (897)
..........++..++..+=.++++++.+.+....
T Consensus 132 --~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 132 --EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred --CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 11112345667778888889999999988765443
No 349
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.30 E-value=0.082 Score=49.52 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
||.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988763
No 350
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.30 E-value=0.042 Score=59.29 Aligned_cols=46 Identities=22% Similarity=0.204 Sum_probs=35.7
Q ss_pred CCCccchHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE--------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+||.++.++.+.-.+.. -..+-|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568888888777544432 124678999999999999999999887
No 351
>PTZ00035 Rad51 protein; Provisional
Probab=95.29 E-value=0.18 Score=54.20 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=40.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC----CCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG----QGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
...++.|+|.+|+|||||+..++-.... ...-..++|++....++...+ ..+++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 4679999999999999999988754421 112246779988777777664 444555554
No 352
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.26 E-value=0.4 Score=49.74 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 163 QLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 163 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-+++...+..+.+ ....++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 34567777766654 567799999999999999887765
No 353
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.26 E-value=0.084 Score=50.40 Aligned_cols=68 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHH
Q 036761 157 TVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (897)
+||....+.++.+.+.. ....-|.|+|..|+||+.+|+.+++.- ...-...+-|+++.- +.+.+...+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~-~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAAL-PEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS--HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhh-hcchhhhhh
Confidence 47888888888776653 333566799999999999999999865 333344555666643 333343334
No 354
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.26 E-value=0.029 Score=58.28 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=35.3
Q ss_pred HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHH
Q 036761 165 DKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 165 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
..+++.+... .+-+.++|+.|+|||++++........ ..| ...-++.+...+...++
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q 79 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQ 79 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHH
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHH
Confidence 4455555544 456689999999999999998876532 222 23445555544444443
No 355
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.26 E-value=0.031 Score=55.93 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=39.4
Q ss_pred HHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 164 LDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 164 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
..++++.+.. ++..+|+|.|++|.|||||...+....+.+++=-.++-|.-|.+++--.++.+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 4445554443 46789999999999999999999888865555556666776777765555443
No 356
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.25 E-value=0.017 Score=57.85 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 357
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.49 Score=51.13 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc-
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK- 255 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~- 255 (897)
|--.++||+|+|||+++.++++.. .|+..- ...+...+ ..+ |++.|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIyd-LeLt~v~~-----------------------n~d----Lr~LL~~ 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYD-LELTEVKL-----------------------DSD----LRHLLLA 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEE-eeeccccC-----------------------cHH----HHHHHHh
Confidence 457899999999999999999987 344332 11111111 111 222232
Q ss_pred -cCceEEEEeccccccc-----------cc---------cccc---cCCCCCCCCcEE-EEecCChhHh-----hhcCCC
Q 036761 256 -EKKFVLLLDDVWQRVA-----------FT---------TVGV---PIPPRDKSASKV-VFTTRSTEVC-----GWMGAH 305 (897)
Q Consensus 256 -~~~~LlVlDdv~~~~~-----------~~---------~~~~---~l~~~~~~~s~i-ivTtR~~~v~-----~~~~~~ 305 (897)
..+-+||+.|++-..+ .+ -+.. .+.. ..|+=|| |.||...+-. +.-+.+
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS-scg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS-SCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccc-cCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 2455677777753211 11 0111 1111 1222455 5666655431 111234
Q ss_pred ceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHh-hhhc
Q 036761 306 KNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGR-AMAC 364 (897)
Q Consensus 306 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~-~l~~ 364 (897)
..+.+.--+.+....||+...+.+. +++ +..+|.+.-.|.-+.=..++. +|..
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h~----L~~eie~l~~~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DHR----LFDEIERLIEETEVTPAQVAEELMKN 416 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Ccc----hhHHHHHHhhcCccCHHHHHHHHhhc
Confidence 4578999999999999999987643 222 344444444444433333333 4443
No 358
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.22 E-value=0.083 Score=54.66 Aligned_cols=40 Identities=13% Similarity=0.297 Sum_probs=31.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
...++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 457999999999999999999866542 2245678888764
No 359
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.19 E-value=0.07 Score=51.93 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=64.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE---eCCcCCHHHHHH------HHHHHhCCCCch---hcc-c
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV---VSKDLQIEKIQE------IIGKKVGLFNDS---WMK-K 241 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~------~i~~~l~~~~~~---~~~-~ 241 (897)
.-.+++|+|..|.|||||++.++.... .....+++. +.. .+...... ++++.+++.... ... .
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 557999999999999999999987652 223333332 211 12222111 145555543210 011 1
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccc---ccccccccccCCCC-CC-CCcEEEEecCChhHh
Q 036761 242 NLAERAVDIYNVLKEKKFVLLLDDVWQ---RVAFTTVGVPIPPR-DK-SASKVVFTTRSTEVC 299 (897)
Q Consensus 242 ~~~~~~~~l~~~l~~~~~LlVlDdv~~---~~~~~~~~~~l~~~-~~-~~s~iivTtR~~~v~ 299 (897)
.-+...-.+.+.+-..+-++++|+.-. ....+.+...+... .. + ..||++|.+.+..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG-KTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHH
Confidence 122333446666777888999999753 22222232222211 11 3 6788888876653
No 360
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.19 E-value=0.033 Score=56.59 Aligned_cols=89 Identities=21% Similarity=0.189 Sum_probs=54.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------------hc--
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------------WM-- 239 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~-- 239 (897)
...++.|.|.+|+|||++|.++..... +..-+.++|++...+ ..++.+.+. +++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-HHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 567999999999999999998765442 111356788887654 344444432 33321110 00
Q ss_pred ---cccHHHHHHHHHHHhcc-CceEEEEeccc
Q 036761 240 ---KKNLAERAVDIYNVLKE-KKFVLLLDDVW 267 (897)
Q Consensus 240 ---~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 267 (897)
..+.+.+...+.+.++. +.-.+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 24566777777777664 45788889873
No 361
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.18 E-value=0.12 Score=49.62 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=62.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC---cCCHHHHHHHHH--HH--hCCCCchhcccc-----
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK---DLQIEKIQEIIG--KK--VGLFNDSWMKKN----- 242 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~--~~--l~~~~~~~~~~~----- 242 (897)
....|.|+|..|-||||.|..++-+.. .+--.+..+..-+ .......+..+- .- .+.. -.+...+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~--g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~-~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV--GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTG-FTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCC-CcccCCCcHHHH
Confidence 457899999999999999998877763 2323344444322 223334433320 00 0100 0011111
Q ss_pred --HHHHHHHHHHHhcc-CceEEEEecccc-----ccccccccccCCCCCCCCcEEEEecCChh
Q 036761 243 --LAERAVDIYNVLKE-KKFVLLLDDVWQ-----RVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 243 --~~~~~~~l~~~l~~-~~~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
..+.....++.+.. +-=++|||.+-. ..+.+++...+...... ..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~-~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGM-QHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCC-CEEEEECCCCC
Confidence 11122333444444 445999999843 22334444444444444 79999999863
No 362
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.18 E-value=0.052 Score=63.77 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=58.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-+++-|+|.+|+||||||.+++... ...-..++|+.....++. ..+++++...+. ....+.++....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a--~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 56899999999999999998876554 233466799988777764 366777765432 12334455555555
Q ss_pred HHhcc-CceEEEEeccc
Q 036761 252 NVLKE-KKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~~-~~~LlVlDdv~ 267 (897)
..++. +.-+||+|.+.
T Consensus 132 ~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 132 MLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHhhcCCCeEEEEcchh
Confidence 65544 56689999985
No 363
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.43 Score=48.26 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=58.4
Q ss_pred CCCccchHHHHHHHHHhcc---------C---CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------E---PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
+++-|-+..++.|.+...= + .-+-|.++|++|.||+.||++|+... ... |++||..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nST-----FFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NST-----FFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCc-----eEEeehH-----
Confidence 5667888888888775431 1 35789999999999999999999876 222 3344432
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhc-cCceEEEEecccc
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK-EKKFVLLLDDVWQ 268 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 268 (897)
++.... ... .+.++..|.+..+ +++-+|.+|.++.
T Consensus 201 ---DLvSKW-------mGE-SEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKW-------MGE-SEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHH-------hcc-HHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 111111 111 2344445555444 5788999999863
No 364
>PTZ00301 uridine kinase; Provisional
Probab=95.14 E-value=0.018 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|.+|+||||||+.+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.035 Score=53.46 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
..+|+|-||-|+||||||+.++++.. | ..+.-.+.+.+=+...+.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~----~-~~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG----F-KVFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC----C-ceeeecccCChHHHHHHHhHH
Confidence 57899999999999999999999883 2 233444555555555555553
No 366
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.12 E-value=0.034 Score=50.22 Aligned_cols=39 Identities=31% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 163 QLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 163 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.+++-+.+.. ....+|.+.|.-|.||||+++.+++...
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 33444444432 3456899999999999999999998864
No 367
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.033 Score=53.64 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.|.|.|.+|.||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 368
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.11 E-value=0.019 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|++|+||||||+.++...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998865
No 369
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.11 E-value=0.12 Score=53.83 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998775544
No 370
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.10 E-value=0.024 Score=57.48 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=49.0
Q ss_pred HHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 165 DKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 165 ~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.+++..+.. ++..+|+|.|.||+|||||.-.+......+++--.++-|.-|.+++--.++.+=.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 344444433 57789999999999999999999888866677677777888888876666655433
No 371
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.10 E-value=0.024 Score=57.02 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|.|++|+||||+|+.+++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 372
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.09 E-value=0.036 Score=64.24 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=57.1
Q ss_pred CCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 154 IEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
.+.++|.++.++.|...+... +.+.|+|++|+||||+|+.+.+... ..+++..+|..- ...+...+++.+..+++
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 356799999999888777654 4788999999999999999998763 445677888655 33466777777776654
No 373
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.08 E-value=0.023 Score=52.86 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=26.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEE
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWV 212 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 212 (897)
..||.|.|.+|+||||||+++.+..... -..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEe
Confidence 3689999999999999999999988433 3344444
No 374
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.07 E-value=0.11 Score=51.48 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCch----hccccH------
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS----WMKKNL------ 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 243 (897)
.-..++|.|.+|+|||+|+..+.+... -+.++++.+++. ..+.++.+.+...-...... ...+..
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 457889999999999999999998762 355588888754 45566666664331111100 001111
Q ss_pred ----HHHHHHHHHHhccCceEEEEeccc
Q 036761 244 ----AERAVDIYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 244 ----~~~~~~l~~~l~~~~~LlVlDdv~ 267 (897)
-...+.++. +++.+|+++||+-
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhH
Confidence 112223333 6899999999983
No 375
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.04 E-value=0.15 Score=51.64 Aligned_cols=53 Identities=19% Similarity=0.259 Sum_probs=34.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
...++.|.|.+|+||||+|.+++.....++ ..+++++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 456999999999999999877655442122 4556666333 455666655 3444
No 376
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.03 E-value=0.06 Score=58.86 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=53.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHHH----
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLAE---- 245 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~---- 245 (897)
.-..++|+|..|+|||||++.++... ..+.++.+-+++.. .+.++.+.++..-++...- ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999998654 22566666676644 3445555544332221100 01111111
Q ss_pred --HHHHHHHHh--ccCceEEEEecccc
Q 036761 246 --RAVDIYNVL--KEKKFVLLLDDVWQ 268 (897)
Q Consensus 246 --~~~~l~~~l--~~~~~LlVlDdv~~ 268 (897)
..-.+-+++ +++.+|+++||+-.
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 112233444 57899999999843
No 377
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.03 E-value=0.072 Score=59.11 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=49.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
.+++.++|++|+||||++..++...........+..++..... ...+.+....+.++.+.. ...+..++...+.+ +
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~-~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ-L 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-h
Confidence 4699999999999999998887765311222456666654321 122334444555554432 12333444444443 3
Q ss_pred ccCceEEEEecc
Q 036761 255 KEKKFVLLLDDV 266 (897)
Q Consensus 255 ~~~~~LlVlDdv 266 (897)
. ..=+|++|..
T Consensus 298 ~-~~DlVlIDt~ 308 (424)
T PRK05703 298 R-DCDVILIDTA 308 (424)
T ss_pred C-CCCEEEEeCC
Confidence 3 3457888876
No 378
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.012 Score=34.52 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=16.4
Q ss_pred cccEEEccCCCCCcccCccccCc
Q 036761 568 RLKVLNLSGARRMSSFPLGISVL 590 (897)
Q Consensus 568 ~L~~L~Ls~~~~~~~lp~~i~~L 590 (897)
+|++|||++| .++.+|.+|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5788888888 777888776653
No 379
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.01 E-value=0.019 Score=56.44 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.++|.|+|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 380
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.99 E-value=0.077 Score=59.43 Aligned_cols=84 Identities=24% Similarity=0.360 Sum_probs=48.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
...++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...+.. ...+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 457999999999999999999988763 22346788876543 3333222 44555422111 1122333333222
Q ss_pred HHhccCceEEEEecc
Q 036761 252 NVLKEKKFVLLLDDV 266 (897)
Q Consensus 252 ~~l~~~~~LlVlDdv 266 (897)
+.+.-++|+|.+
T Consensus 154 ---~~~~~lVVIDSI 165 (446)
T PRK11823 154 ---EEKPDLVVIDSI 165 (446)
T ss_pred ---hhCCCEEEEech
Confidence 224557788877
No 381
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.0029 Score=59.92 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=19.2
Q ss_pred CCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccc
Q 036761 777 APNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVL 827 (897)
Q Consensus 777 l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 827 (897)
.|+|+.|+|++|+.+++-.- ..+..|++|+.|.|.+++..
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhh
Confidence 35555555555555444211 13445555555555555443
No 382
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.98 E-value=0.015 Score=50.93 Aligned_cols=23 Identities=39% Similarity=0.719 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
|.|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999887763
No 383
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.98 E-value=0.037 Score=59.08 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 154 IEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
-..+||.++.+..++-.+.++...-|.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 35679999999988777777667778899999999999999997654
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.037 Score=53.47 Aligned_cols=119 Identities=16% Similarity=0.144 Sum_probs=60.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC--CCc-hhcc---------cc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL--FND-SWMK---------KN 242 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~--~~~-~~~~---------~~ 242 (897)
.-.+++|+|..|.|||||++.++.... .....+++.-....+.. ..+...++. +.. .... ..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCH
Confidence 456899999999999999999987652 22334443211000000 111111110 000 0000 11
Q ss_pred HHHHHHHHHHHhccCceEEEEecccccc---ccccccccCCCC-CCCCcEEEEecCChhHhh
Q 036761 243 LAERAVDIYNVLKEKKFVLLLDDVWQRV---AFTTVGVPIPPR-DKSASKVVFTTRSTEVCG 300 (897)
Q Consensus 243 ~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~-~~~~s~iivTtR~~~v~~ 300 (897)
-+...-.+.+.+..++=++++|+.-..- ....+...+... ..+ ..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCC-CEEEEECCCHHHHH
Confidence 1223334666777888899999975322 222222222111 123 67888888876544
No 385
>PRK03839 putative kinase; Provisional
Probab=94.96 E-value=0.019 Score=55.99 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999986
No 386
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.95 E-value=0.052 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.|.|.|.+|+||||+|+.+.....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998774
No 387
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.95 E-value=0.096 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+|+|.|..|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988763
No 388
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.93 E-value=0.014 Score=51.65 Aligned_cols=27 Identities=44% Similarity=0.519 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcccCCCCCC
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFLGQGDFD 207 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 207 (897)
|.|+|.+|+||||+|+.++... ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~--~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL--GLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT--T--EE
T ss_pred EeeECCCccHHHHHHHHHHHHc--CCcee
Confidence 6799999999999999999987 55664
No 389
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.90 E-value=0.04 Score=59.79 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+||||||+.+.--.
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHccc
Confidence 355789999999999999999986554
No 390
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.035 Score=49.84 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK 255 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 255 (897)
.+-|.|.|.+|+||||+|.+++... . .-|+++|+-..-..++...-+... ...-+.+.+.+.|...+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLMI 74 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHHh
Confidence 4568899999999999999999654 1 336666654333333322222111 122345556666666555
Q ss_pred cCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhh
Q 036761 256 EKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW 301 (897)
Q Consensus 256 ~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~ 301 (897)
+..+++ +|+. ...||...-. -.+++||-+...-.+
T Consensus 75 ~Gg~IV---------DyHg-Cd~Fperwfd-lVvVLr~~~s~LY~R 109 (176)
T KOG3347|consen 75 EGGNIV---------DYHG-CDFFPERWFD-LVVVLRTPNSVLYDR 109 (176)
T ss_pred cCCcEE---------eecc-cCccchhhee-EEEEEecCchHHHHH
Confidence 433221 2221 1223433333 456667766544333
No 391
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.88 E-value=0.03 Score=59.65 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=38.2
Q ss_pred CCCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 153 PIEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 153 ~~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.+.++|.++.++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 336679999999988755544455668999999999999999997655
No 392
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.87 E-value=0.11 Score=51.08 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCC--------CEEEEEEeCCc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDF--------DFLIWVVVSKD 217 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~~~~ 217 (897)
..++.|.|++|+||||++..++........| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 4589999999999999999988776532222 36788877665
No 393
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.86 E-value=0.024 Score=54.23 Aligned_cols=43 Identities=30% Similarity=0.254 Sum_probs=33.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
..++.+.|+.|+|||.||+.+++.... +.....+-++.+....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 468899999999999999999998832 4556677777666544
No 394
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.84 E-value=0.045 Score=48.40 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=32.7
Q ss_pred CCccchHHHHHHHHHhc----c---CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLV----E---EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|.+-..+.+.+.+. + ++.-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676655555555443 3 356699999999999999888887773
No 395
>PTZ00494 tuzin-like protein; Provisional
Probab=94.81 E-value=1.7 Score=46.99 Aligned_cols=162 Identities=14% Similarity=0.040 Sum_probs=96.8
Q ss_pred CCCccchHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGMQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
..+|.|+++-..+.+.|.+ ...+++.+.|.-|.||++|.+....... -..++|.+... ++-++.+.+++
T Consensus 371 ~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~---EDtLrsVVKAL 442 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGT---EDTLRSVVRAL 442 (664)
T ss_pred ccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCC---cchHHHHHHHh
Confidence 5689998887777776654 4789999999999999999998877652 33567777654 45677888899
Q ss_pred CCCCchhccccHHHHHHHHHH---HhccCceEEEEecccccccccccc---ccCCCCCCCCcEEEEecCChhHhh---hc
Q 036761 232 GLFNDSWMKKNLAERAVDIYN---VLKEKKFVLLLDDVWQRVAFTTVG---VPIPPRDKSASKVVFTTRSTEVCG---WM 302 (897)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~---~l~~~~~LlVlDdv~~~~~~~~~~---~~l~~~~~~~s~iivTtR~~~v~~---~~ 302 (897)
+.+.-..-.+-.+-+.+..+. ...++.-+||+-== +-.++..+. ..+.....- +.|++----+.+.. ..
T Consensus 443 gV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~vaLacDrRl-CHvv~EVplESLT~~n~~L 520 (664)
T PTZ00494 443 GVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEVVSLVSDCQA-CHIVLAVPMKALTPLNVSS 520 (664)
T ss_pred CCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHHHHHHccchh-heeeeechHhhhchhhccC
Confidence 887643222223333332222 23455556665311 111111110 111122222 66776544433311 12
Q ss_pred CCCceEEcCCCChHHHHHHHHHHh
Q 036761 303 GAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
..-..|.+++++.++|.++..+..
T Consensus 521 PRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 521 RRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccceeEecCCcCHHHHHHHHhccc
Confidence 223468999999999999887764
No 396
>PRK04040 adenylate kinase; Provisional
Probab=94.81 E-value=0.024 Score=55.35 Aligned_cols=25 Identities=40% Similarity=0.599 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|+|++|+||||+++.+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 397
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.79 E-value=0.15 Score=52.24 Aligned_cols=95 Identities=8% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccC--CCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccH-HH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLG--QGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNL-AE 245 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~-~~ 245 (897)
..-..++|.|..|+|||+|+..+.+.... +.+-+.++++-+++.. ...++...+...=.+.... ..++.. ..
T Consensus 67 g~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 67 VRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 35578899999999999999998877531 2335778888887754 5566666665532221110 011111 11
Q ss_pred -----HHHHHHHHhc---cCceEEEEecccc
Q 036761 246 -----RAVDIYNVLK---EKKFVLLLDDVWQ 268 (897)
Q Consensus 246 -----~~~~l~~~l~---~~~~LlVlDdv~~ 268 (897)
..-.+-++++ ++++|+++||+-.
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1123445543 6899999999853
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.78 E-value=0.24 Score=53.05 Aligned_cols=87 Identities=20% Similarity=0.185 Sum_probs=50.0
Q ss_pred CceEEEEEcCCCCcHHH-HHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTT-LLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
..++|.+||+.|+|||| ||+..+.-... ..=..+..|+.... ....+.++..++-++++-. ...+..++...+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~--vv~~~~el~~ai~~ 278 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE--VVYSPKELAEAIEA 278 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceE--EecCHHHHHHHHHH
Confidence 47999999999999986 66554443311 22245666665543 2455666677777776543 23344554444433
Q ss_pred HhccCceEEEEecc
Q 036761 253 VLKEKKFVLLLDDV 266 (897)
Q Consensus 253 ~l~~~~~LlVlDdv 266 (897)
+++.. +|.+|=+
T Consensus 279 -l~~~d-~ILVDTa 290 (407)
T COG1419 279 -LRDCD-VILVDTA 290 (407)
T ss_pred -hhcCC-EEEEeCC
Confidence 33343 4444655
No 399
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.78 E-value=0.03 Score=59.73 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.+||.++.+..|...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5679999999999888888888888899999999999999986654
No 400
>PRK05973 replicative DNA helicase; Provisional
Probab=94.77 E-value=0.16 Score=51.10 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 227 (897)
....++.|.|.+|+|||++|.++..... ..-..+++++...+ ..++...+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 3557899999999999999999876653 22356777766554 44555444
No 401
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.057 Score=51.18 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=60.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC--CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL--QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
.-.+++|+|..|.|||||++.+..... .....+++.-.... ..... ...++... +-..-+...-.+..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~~ 93 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALAR 93 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHHH
Confidence 447999999999999999999987652 23444444321111 11111 11111100 01111233334556
Q ss_pred HhccCceEEEEeccccc---cccccccccCCCC-CCCCcEEEEecCChhHhhh
Q 036761 253 VLKEKKFVLLLDDVWQR---VAFTTVGVPIPPR-DKSASKVVFTTRSTEVCGW 301 (897)
Q Consensus 253 ~l~~~~~LlVlDdv~~~---~~~~~~~~~l~~~-~~~~s~iivTtR~~~v~~~ 301 (897)
.+...+-++++|+.-.. .....+...+... ..+ ..+|++|.+.+....
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~-~tii~~sh~~~~~~~ 145 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDPELAEL 145 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHH
Confidence 66667788999998532 2222222221111 123 568888887766443
No 402
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.74 E-value=0.078 Score=61.75 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 154 IEPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
.++++|.++.++.+...+... +-+.++|++|+||||+|+.+.+... ...|...+++.-+ ..+...+++.+...++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPNP-EDPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeCC-CCCchHHHHHHHHhhc
Confidence 367799999888887777654 3555999999999999999998774 2334334433322 2344555666666654
No 403
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.73 E-value=0.037 Score=50.99 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=27.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
++|.|+|..|+|||||++.+.+.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999998852 3445454555444
No 404
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.70 E-value=0.14 Score=57.47 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
.-.++.|.|.+|+|||||+.+++...... -..++|++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC
Confidence 45799999999999999999997765322 23577887654
No 405
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.69 E-value=0.052 Score=53.00 Aligned_cols=50 Identities=28% Similarity=0.518 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (897)
.|+|+|-||+||||+|..+......++.| .++=|....++++. .+|+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL~-------~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNLP-------EALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCChH-------HhcCCCC
Confidence 68999999999999999866655433333 34446666665543 4566544
No 406
>PRK00625 shikimate kinase; Provisional
Probab=94.68 E-value=0.024 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|+||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 407
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.64 E-value=0.054 Score=55.88 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999988763
No 408
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.64 E-value=0.075 Score=57.48 Aligned_cols=46 Identities=24% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCCccchHHHHHHHHHhcc---------C-----CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------E-----PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~-----~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.++.++.+..++.. + ..+.|.++|++|+|||+||+.+....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999988888766632 0 14678999999999999999998876
No 409
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.63 E-value=0.046 Score=57.41 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=40.9
Q ss_pred CCCccchHHHHHHHHHhcc------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.++.++++++.+.. ..-+|+.++|+.|.||||||+.+.+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998864 367899999999999999999998876
No 410
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.62 E-value=0.022 Score=55.66 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 411
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.58 E-value=0.18 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.+.|++|.||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998764
No 412
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.27 Score=51.69 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=33.4
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+++.|.++.++-|.+...- ..-+-|..+|++|.|||-||++|+..-
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3455666666666554421 134578899999999999999999876
No 413
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.56 E-value=0.045 Score=53.43 Aligned_cols=37 Identities=27% Similarity=0.354 Sum_probs=30.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV 214 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 214 (897)
.+++.|+|+.|+|||||++.+.... ...|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~--~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF--PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS--TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc--ccccccceeecc
Confidence 4789999999999999999999987 667765555543
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.54 E-value=0.19 Score=55.13 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=37.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 235 (897)
...+++++|+.|+||||++..++...........+..+.... .....+.+...++.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 447999999999999999998876532122223444444332 1233444555666666543
No 415
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.53 E-value=0.038 Score=54.12 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=35.8
Q ss_pred chHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE
Q 036761 160 MQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV 213 (897)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 213 (897)
+..+-...++.+. ...++.+.|++|+|||.||.+.+-+.-..+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 3444455556665 557999999999999999998876655568889888875
No 416
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.51 E-value=0.21 Score=56.89 Aligned_cols=96 Identities=14% Similarity=0.094 Sum_probs=56.7
Q ss_pred HHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh-----
Q 036761 166 KVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW----- 238 (897)
Q Consensus 166 ~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----- 238 (897)
.+-+.|.. ..-.++.|.|++|+|||||+.+++.... ..-+.+++++... +..++...+ +.++......
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~--~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~ 325 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC--ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGL 325 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCc
Confidence 34444433 2567999999999999999999987763 2335677776554 445555553 4555432110
Q ss_pred --------ccccHHHHHHHHHHHhcc-CceEEEEecc
Q 036761 239 --------MKKNLAERAVDIYNVLKE-KKFVLLLDDV 266 (897)
Q Consensus 239 --------~~~~~~~~~~~l~~~l~~-~~~LlVlDdv 266 (897)
.....++....+.+.+.. +.-.+|+|.+
T Consensus 326 l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 326 LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 112234555555555543 3446677766
No 417
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.14 Score=60.75 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=65.3
Q ss_pred CCCccchHHHHHHHHHhcc------C--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------E--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
..++|.++.+..|.+.+.. + ......+.|+.|+|||-||++++.-. -+..+..+-++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--FGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--cCCccceEEechhhhhh-------
Confidence 3457888888888777653 1 35678899999999999999998877 45556666665554222
Q ss_pred HHHHhCCCCchhccccHHHHHHHHHHHhccCce-EEEEecccc
Q 036761 227 IGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKF-VLLLDDVWQ 268 (897)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~ 268 (897)
+.+.++.+. .... .+-...|-+.++.++| +|+||||+.
T Consensus 633 vskligsp~-gyvG---~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGSPP-GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCCCc-cccc---chhHHHHHHHHhcCCceEEEEechhh
Confidence 333333322 1111 1223467778888886 566799974
No 418
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.48 E-value=0.024 Score=30.75 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=6.2
Q ss_pred CCCEeeccCCCccccC
Q 036761 592 SLQHLDLSGTAIRELP 607 (897)
Q Consensus 592 ~L~~L~L~~~~i~~lp 607 (897)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 419
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.47 E-value=0.14 Score=56.86 Aligned_cols=93 Identities=19% Similarity=0.257 Sum_probs=58.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHH----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLA---- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (897)
..-..++|.|.+|+|||||+..+.+.... .+-+.++++-+++.. .+.++...+...-.+.... ..+....
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 45678999999999999999988877642 356788888777543 4556666665432221100 0111111
Q ss_pred --HHHHHHHHHh---ccCceEEEEeccc
Q 036761 245 --ERAVDIYNVL---KEKKFVLLLDDVW 267 (897)
Q Consensus 245 --~~~~~l~~~l---~~~~~LlVlDdv~ 267 (897)
...-.+-+++ .++.+|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 1223344555 3789999999994
No 420
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.45 E-value=0.033 Score=53.93 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....|.|+|++|+||||+|+.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999886
No 421
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.45 E-value=0.1 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.-.+++|+|..|.|||||++.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999876
No 422
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.42 E-value=0.34 Score=50.12 Aligned_cols=115 Identities=14% Similarity=0.040 Sum_probs=62.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE---eCCcCCHHHHHHHHHHHhCC-CCch-hcc---ccHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV---VSKDLQIEKIQEIIGKKVGL-FNDS-WMK---KNLAE 245 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~-~~~~-~~~---~~~~~ 245 (897)
+...-++|+|+.|.|||||.+.++.... .....+++. +....... +++..... +... ... .+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~~ 181 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGCP 181 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHH----HHHHHhcccccccccccccccccch
Confidence 4457899999999999999999998763 223333332 11111112 23222211 1110 000 01111
Q ss_pred HHHHHHHHhc-cCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHh
Q 036761 246 RAVDIYNVLK-EKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVC 299 (897)
Q Consensus 246 ~~~~l~~~l~-~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~ 299 (897)
....+...+. ..+=++++|.+-....+..+...+. .| ..||+||.+..+.
T Consensus 182 k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G-~~vI~ttH~~~~~ 232 (270)
T TIGR02858 182 KAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AG-VSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CC-CEEEEEechhHHH
Confidence 1223444443 5788999999976665555544432 34 7799999876653
No 423
>PRK05439 pantothenate kinase; Provisional
Probab=94.40 E-value=0.27 Score=51.64 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999988755
No 424
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.39 E-value=0.08 Score=55.01 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=40.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
+..+++.|+|.+|+|||++|.++.... ..++..++||+.... ..++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~--~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG--AREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH--HhcCCcEEEEEecCC--HHHHHHHHH
Confidence 467899999999999999999998877 445888999988764 444444443
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.39 E-value=0.028 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|+.|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 426
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.03 Score=51.96 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 036761 178 IVGLYGMGGVGKTTLLTHLH 197 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~ 197 (897)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 427
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.39 E-value=0.036 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..++++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 457999999999999999999998774
No 428
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.38 E-value=0.098 Score=62.62 Aligned_cols=60 Identities=15% Similarity=0.141 Sum_probs=43.2
Q ss_pred CCCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|+...+..+.+.+.. ....-|.|+|..|+|||++|+.+++... ..-...+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~ 437 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAA 437 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEeccc
Confidence 4679999888888766643 3445788999999999999999987652 2223445555554
No 429
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.37 E-value=0.028 Score=54.44 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 430
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.35 E-value=0.2 Score=50.30 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..-.+++|+|..|.|||||++.++....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3557899999999999999999987643
No 431
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.31 E-value=0.2 Score=55.09 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC----chhccccHH-----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN----DSWMKKNLA----- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~----- 244 (897)
..-..++|+|..|+|||||++.+..... ....+++..-.+..++.++............ .+ .+....
T Consensus 163 ~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~q-sd~~~~~r~~~ 238 (450)
T PRK06002 163 CAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVAT-SDESPMMRRLA 238 (450)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEc-CCCCHHHHHHH
Confidence 3456899999999999999998876542 2234444433234445544443333221000 00 011111
Q ss_pred -HHHHHHHHHh--ccCceEEEEeccc
Q 036761 245 -ERAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 245 -~~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
...-.+-+++ +++.+|+++||+-
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchH
Confidence 1112233333 4789999999984
No 432
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.30 E-value=0.055 Score=53.29 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|..|+|||||++.++--.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 355799999999999999999987654
No 433
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.30 E-value=0.063 Score=61.67 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=38.4
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
++++|.+..++.+...+......-|.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999988776655567789999999999999999864
No 434
>PRK06217 hypothetical protein; Validated
Probab=94.29 E-value=0.033 Score=54.38 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCC--CEEEE
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDF--DFLIW 211 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~w 211 (897)
..|.|.|.+|+||||+|+++...... .++ |..+|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~ 37 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFW 37 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceee
Confidence 35899999999999999999987632 222 44555
No 435
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.27 E-value=0.036 Score=53.91 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++|+|+.|+|||||++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 436
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.27 E-value=0.22 Score=52.99 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+++++|++|+||||++..++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999988774
No 437
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.26 E-value=0.12 Score=57.73 Aligned_cols=93 Identities=22% Similarity=0.176 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEE-EEEeCCcC-CHHHHHHHHHHHhCC-CCch--hccccHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLI-WVVVSKDL-QIEKIQEIIGKKVGL-FNDS--WMKKNLAERAV 248 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l~~-~~~~--~~~~~~~~~~~ 248 (897)
+.-...+|+|++|+|||||++.+++.... .+-++.+ .+-+.+-+ .+.++.+.+-..+-. ..+. ..........-
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 45567899999999999999999986632 2334443 33444433 233332222000000 0000 00011112222
Q ss_pred HHHHHh--ccCceEEEEeccc
Q 036761 249 DIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 249 ~l~~~l--~~~~~LlVlDdv~ 267 (897)
.+-+++ .++.+||++|++-
T Consensus 493 ~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCch
Confidence 233444 5789999999984
No 438
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.26 E-value=0.031 Score=55.88 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 439
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.24 E-value=0.039 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998875
No 440
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.22 E-value=0.18 Score=56.20 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCC
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 234 (897)
..|++++|+.|+||||++.+++.....+.....+..+.... .....+-++..++.++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999999987663222222455555432 123344455556666654
No 441
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.20 E-value=0.047 Score=54.16 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE-------eCCcCCHHHH--HHHHHHHhCCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV-------VSKDLQIEKI--QEIIGKKVGLF 234 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-------~~~~~~~~~~--~~~i~~~l~~~ 234 (897)
....|.++||+|+||||..++++.....++.-..++=.. .....++++. +++..++.++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 456889999999999999999998875433333333221 1223345543 45667766543
No 442
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.16 E-value=0.041 Score=50.63 Aligned_cols=23 Identities=48% Similarity=0.768 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 443
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.15 E-value=0.098 Score=52.85 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhh
Q 036761 15 IFNRCLDCFLGEAAYVRNLQENVEALKYELERLIAIKGDVEDRVRNAERQQMMTRLNQVQRWLKRVDAVTAEANELIRDG 94 (897)
Q Consensus 15 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~wl~~~~~~~~~~ed~ld~~ 94 (897)
+++.|-.+..+....+.-++.+++-++.|++.||.||+.+ +|..+ ...+. .+....++-..||++|+++|.+
T Consensus 301 lL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~-nkh~~-~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 301 LLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPH-NKHDT-NEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccc-hhhhh-hhhHHHHHHHHHhheeeeeehh
Confidence 5666777777777777888999999999999999999886 44433 23333 8899999999999999999886
Q ss_pred h
Q 036761 95 S 95 (897)
Q Consensus 95 ~ 95 (897)
.
T Consensus 373 i 373 (402)
T PF12061_consen 373 I 373 (402)
T ss_pred h
Confidence 3
No 444
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.12 E-value=0.035 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998864
No 445
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.11 E-value=0.21 Score=54.85 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhc-----cC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEE
Q 036761 161 QSQLDKVWSCLV-----EE--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWV 212 (897)
Q Consensus 161 ~~~~~~l~~~L~-----~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 212 (897)
.+-+.++..||. .+ +.+|+.|.|++|+||||.++.++... .+..+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----Cceeeeec
Confidence 445677777776 23 45699999999999999999988765 34555565
No 446
>PRK08149 ATP synthase SpaL; Validated
Probab=94.10 E-value=0.26 Score=54.18 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=51.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCch----hccccH-----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS----WMKKNL----- 243 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 243 (897)
..-..++|+|..|+|||||++.++... .-+.++...+... .++.++............-. ..+...
T Consensus 149 ~~Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 149 GVGQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred ecCCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 355789999999999999999998754 2234444444433 34556666665543221100 001111
Q ss_pred -HHHHHHHHHHh--ccCceEEEEeccc
Q 036761 244 -AERAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 244 -~~~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
......+-+++ +++++||++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11122233333 4889999999984
No 447
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.09 E-value=0.081 Score=52.40 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=45.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
+...++.|.|.+|.||||++..+..... ....+.++...-.....-...+...-..............+...+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEY 88 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999988752 344555553321111111122222211111111222233455666667
Q ss_pred hccCceEEEEecccc
Q 036761 254 LKEKKFVLLLDDVWQ 268 (897)
Q Consensus 254 l~~~~~LlVlDdv~~ 268 (897)
...+++=+|+|..-.
T Consensus 89 a~~~~~nii~E~tl~ 103 (199)
T PF06414_consen 89 AIENRYNIIFEGTLS 103 (199)
T ss_dssp HHHCT--EEEE--TT
T ss_pred HHHcCCCEEEecCCC
Confidence 777888888898754
No 448
>PF13245 AAA_19: Part of AAA domain
Probab=94.09 E-value=0.087 Score=42.54 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=18.6
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLL-THLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~v~~~~ 200 (897)
+.+++.|.|++|.|||+++ +.+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577889999999999544 4444433
No 449
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.08 E-value=0.035 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 450
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.15 Score=56.09 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=52.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHHH---
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLAE--- 245 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 245 (897)
..-..++|+|..|+|||||++.+++... .+.++++-++... .+.++....+..-++.... ..+.....
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3567899999999999999999987652 2455566666543 3444444443332221100 01111111
Q ss_pred ---HHHHHHHHh--ccCceEEEEeccc
Q 036761 246 ---RAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 246 ---~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
..-.+-+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 112233444 4789999999994
No 451
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.07 E-value=0.17 Score=51.66 Aligned_cols=60 Identities=30% Similarity=0.306 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc-CCCC-------CCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFL-GQGD-------FDFLIWVVVSKD-LQIEKIQEIIGKKVGLFND 236 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~-------f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~ 236 (897)
-++.|+|.||+|||||+-..+=... .++- -..+++|++... .++-.-++.+..+++++..
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 3455679999999999876543221 1222 346788877654 3556667778888887653
No 452
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.05 E-value=0.037 Score=53.62 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhccc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+|+|.|.+|+||||||+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998763
No 453
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.05 E-value=0.21 Score=55.18 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=56.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHH----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLA---- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (897)
..-..++|.|.+|+|||||+..+........ -+.++++-+++.. .+.++.+.+...=.+.... ..++...
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4557899999999999999998876653221 2567777776543 4556666665432221100 0111111
Q ss_pred --HHHHHHHHHh---ccCceEEEEeccc
Q 036761 245 --ERAVDIYNVL---KEKKFVLLLDDVW 267 (897)
Q Consensus 245 --~~~~~l~~~l---~~~~~LlVlDdv~ 267 (897)
...-.+-+++ +++.+||++||+-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1122345555 5789999999994
No 454
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.68 Score=46.67 Aligned_cols=45 Identities=31% Similarity=0.388 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++-|-+..+++|.+...= ...+-|.++|.+|.|||-||++|+|.-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 345789999999887642 145678899999999999999999976
No 455
>PRK05922 type III secretion system ATPase; Validated
Probab=94.03 E-value=0.17 Score=55.63 Aligned_cols=91 Identities=11% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCchh----ccccHH----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDSW----MKKNLA---- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~---- 244 (897)
..-..++|+|..|+|||||++.+.... ..+....+.++.. ....+.+.+..........-. .+....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 355679999999999999999998764 2233444444443 233444444443332211100 011111
Q ss_pred --HHHHHHHHHh--ccCceEEEEecccc
Q 036761 245 --ERAVDIYNVL--KEKKFVLLLDDVWQ 268 (897)
Q Consensus 245 --~~~~~l~~~l--~~~~~LlVlDdv~~ 268 (897)
...-.+-+++ +++++|+++||+-.
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1122234444 47899999999943
No 456
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.00 E-value=1.6 Score=45.53 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=39.1
Q ss_pred cCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChh-Hhhh-cCCCceEEcCCCChHHHHHHHH
Q 036761 256 EKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTE-VCGW-MGAHKNFEVGCLSANDARELFR 323 (897)
Q Consensus 256 ~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~ 323 (897)
+++-++|+||++. ......+...+-....+ +.+|++|.+.+ +... ......+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~-t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSE-IYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCC-eEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 4566899999975 34555555555554554 66777666643 3222 22345677766 6666666664
No 457
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.00 E-value=0.078 Score=49.62 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 163 QLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 163 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++|.+.+.. ++++++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677777743 899999999999999999998875
No 458
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.00 E-value=4.6 Score=45.55 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=37.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
...++.|-|.+|+|||++|..++.+...... ..++|++... +..++...+....
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g-~~vl~~SlEm--~~~~i~~R~~~~~ 247 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEG-KPVAFFSLEM--SAEQLAMRMLSSE 247 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CeEEEEeCcC--CHHHHHHHHHHHh
Confidence 4568999999999999999998876532222 4566766554 5666666665544
No 459
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.21 Score=48.85 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHHhccCceEEEEecccccccccccc------ccCCCCCCCCcEEEEecCChhHhhhcCCCceE
Q 036761 247 AVDIYNVLKEKKFVLLLDDVWQRVAFTTVG------VPIPPRDKSASKVVFTTRSTEVCGWMGAHKNF 308 (897)
Q Consensus 247 ~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~------~~l~~~~~~~s~iivTtR~~~v~~~~~~~~~~ 308 (897)
...+.+.+--++=+.|||..++-.+.+.+. ..+... + +-+++.|....++.....+.+|
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~--~-~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREE--G-RGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcC--C-CeEEEEecHHHHHhhcCCCEEE
Confidence 344555566677899999998654444331 222222 3 5677778888887776655544
No 460
>PRK13947 shikimate kinase; Provisional
Probab=93.96 E-value=0.043 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
-|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 461
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.91 E-value=0.056 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+|.|+|++|+||||+|+.++....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998773
No 462
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.91 E-value=0.051 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987663
No 463
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.91 E-value=0.48 Score=53.91 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=90.6
Q ss_pred CCCccchHHHHHH---HHHhccC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKV---WSCLVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l---~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+.-|.|+.++++ ++.|.++ -++-|.++|++|.|||.||++++....+- | .+.|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS----- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS----- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch-----
Confidence 4557988766655 4556542 14568899999999999999999988432 2 111110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc------------cccc----cccccCCCCC--C
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR------------VAFT----TVGVPIPPRD--K 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~------------~~~~----~~~~~l~~~~--~ 284 (897)
+..+.+ .........+...+..++-++++++|.++.. +.++ ++..-. ++. +
T Consensus 218 ---~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm-DGF~~~ 286 (596)
T COG0465 218 ---DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM-DGFGGN 286 (596)
T ss_pred ---hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh-ccCCCC
Confidence 011111 0111122223334445566889999987532 1111 111111 111 1
Q ss_pred CCcEEEEecCChhHhh-----hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 285 SASKVVFTTRSTEVCG-----WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
.|-.||..|..++|.. .-+-+..+.++..+-..-.+.++-++........-++. .|++.+-|.--|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcccc
Confidence 2245555566565531 11224456666666677777777666444322223332 277777665433
No 464
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.91 E-value=0.056 Score=53.95 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=26.9
Q ss_pred HhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 170 CLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 170 ~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+.+.++++|+++|..|+|||||..++.+..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4445689999999999999999999998875
No 465
>PRK06851 hypothetical protein; Provisional
Probab=93.90 E-value=1.2 Score=48.05 Aligned_cols=53 Identities=21% Similarity=0.193 Sum_probs=36.6
Q ss_pred ccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeC
Q 036761 158 VGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVS 215 (897)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 215 (897)
-|.-...+.+. ++-.+++.|.|.+|+|||||+++++.... +..++..++-|.+
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~ 252 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGF 252 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCC
Confidence 35444455554 35568899999999999999999999884 3344555444433
No 466
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.86 E-value=0.36 Score=48.12 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|.|..|.|||||++.+..-.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 355789999999999999999997654
No 467
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.24 Score=58.18 Aligned_cols=87 Identities=25% Similarity=0.356 Sum_probs=51.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC--HHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ--IEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
..|++++|+.|+||||.+.+++...........+..++.. .+. ..+.++...+.++.+.. ...+..++...+. .
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~--~~~~~~~l~~al~-~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH--AVKDAADLRFALA-A 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc--ccCCHHHHHHHHH-H
Confidence 4799999999999999999888765322212345555433 232 44566667777765442 2234455444443 3
Q ss_pred hccCceEEEEeccc
Q 036761 254 LKEKKFVLLLDDVW 267 (897)
Q Consensus 254 l~~~~~LlVlDdv~ 267 (897)
++++. +|++|=.-
T Consensus 261 ~~~~D-~VLIDTAG 273 (767)
T PRK14723 261 LGDKH-LVLIDTVG 273 (767)
T ss_pred hcCCC-EEEEeCCC
Confidence 44443 66667664
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.85 E-value=0.047 Score=53.16 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 469
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.82 E-value=0.088 Score=55.56 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
.+++.+.|.||+||||+|.+.+-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999998666553233 44777776666666655543
No 470
>PRK13949 shikimate kinase; Provisional
Probab=93.80 E-value=0.052 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.402 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+-|.|+|+.|+||||+++.+++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999887
No 471
>PRK14530 adenylate kinase; Provisional
Probab=93.80 E-value=0.047 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 472
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.79 E-value=0.048 Score=51.02 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEE
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVV 213 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 213 (897)
.+|++|+|+.|+|||||..++....+.++ -.+.-|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G--~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG--YRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC--cEEEEEE
Confidence 47999999999999999999999885333 2444443
No 473
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.78 E-value=0.085 Score=53.80 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=21.7
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 164 LDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 164 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+.+...+... .+..|+|++|+||||++..+....
T Consensus 7 ~~Ai~~~~~~~--~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 7 REAIQSALSSN--GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHCTSS--E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCEEEECCCCCChHHHHHHHHHHh
Confidence 33444444322 278999999999998776666554
No 474
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.77 E-value=0.21 Score=54.99 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=57.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHH----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLA---- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (897)
..-..++|.|.+|+|||+|+..+..... +.+-+.++++-+++.. ...++.+.+...=.+.... ..++..-
T Consensus 136 gkGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 136 ERGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 3557899999999999999999877753 2334788888887654 4555666655432211100 0111111
Q ss_pred --HHHHHHHHHhc---cCceEEEEecccc
Q 036761 245 --ERAVDIYNVLK---EKKFVLLLDDVWQ 268 (897)
Q Consensus 245 --~~~~~l~~~l~---~~~~LlVlDdv~~ 268 (897)
...-.+-++++ ++.+|+++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 12233445554 5899999999943
No 475
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.74 E-value=0.13 Score=53.32 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=41.0
Q ss_pred CCCccchHHHHH---HHHHhccC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC
Q 036761 155 EPTVGMQSQLDK---VWSCLVEE--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD 207 (897)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~ 207 (897)
..+||..+..+. +++++.++ .-+.|.|+|++|.|||+||-.+.+..-..-.|.
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 568998776543 56666654 457999999999999999999999885555553
No 476
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.74 E-value=0.17 Score=60.70 Aligned_cols=180 Identities=17% Similarity=0.190 Sum_probs=85.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc--------------CCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL--------------GQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWM 239 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~--------------~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 239 (897)
++.+++.|+|+.+.||||+.+.+.-..- .-..|+. ++..++...++..-...+.
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lStfS----------- 392 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLSTFS----------- 392 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhHHH-----------
Confidence 3567899999999999999998753310 0111222 2333333222211111110
Q ss_pred cccHHHHHHHHHHHhccCceEEEEeccccccc---cccc----cccCCCCCCCCcEEEEecCChhHhhhcCCCceEEcCC
Q 036761 240 KKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA---FTTV----GVPIPPRDKSASKVVFTTRSTEVCGWMGAHKNFEVGC 312 (897)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~---~~~~----~~~l~~~~~~~s~iivTtR~~~v~~~~~~~~~~~l~~ 312 (897)
....+. ..+...+ ..+-|+++|..-...+ -..+ ...+.. .+ +.+|+||...++.........+.-..
T Consensus 393 -~~m~~~-~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~-~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 393 -GHMTNI-VRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RG-AKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred -HHHHHH-HHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CC-CEEEEECChHHHHHHHhcCCCeEEEE
Confidence 011111 1222222 4677999999864222 1122 222222 34 88999999988755433222111100
Q ss_pred CC-hHHHHHH-HHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHcc
Q 036761 313 LS-ANDAREL-FRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQT 380 (897)
Q Consensus 313 L~-~~e~~~l-f~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~ 380 (897)
+. +.+.... ++-..|. . -...|-.|++++ |+|-.|..-|..+.. ........++..+..
T Consensus 467 ~~~d~~~l~~~Ykl~~G~---~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~ 527 (782)
T PRK00409 467 VEFDEETLRPTYRLLIGI---P----GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEE 527 (782)
T ss_pred EEEecCcCcEEEEEeeCC---C----CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHH
Confidence 10 1111000 0000011 1 123477888877 688887777766654 233455555555544
No 477
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.73 E-value=0.06 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=93.71 E-value=0.3 Score=50.05 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+..+|+|.|.+|+||||+|+.+.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 479
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.71 E-value=0.21 Score=50.73 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=33.0
Q ss_pred CccchHHHHHHHHHhcc-------CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 157 TVGMQSQLDKVWSCLVE-------EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
++|..-.++.++..+.+ .+.=|++.+|..|+||...++.+++...
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~ 135 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLY 135 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHH
Confidence 35655555555555542 2556999999999999999999988763
No 480
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.70 E-value=0.36 Score=50.51 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
...++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 446889999999999999999877653 222356888887653 44555555443
No 481
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.70 E-value=0.35 Score=53.58 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=53.3
Q ss_pred CCceEEEEEcCCCCcHHHHH-HHHHhcccC-----CCCCCEEEEEEeCCcCCHHHHHHHHHHHhC-CCCch----hcccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLL-THLHNKFLG-----QGDFDFLIWVVVSKDLQIEKIQEIIGKKVG-LFNDS----WMKKN 242 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~----~~~~~ 242 (897)
..-..++|.|..|+|||+|| ..+.+.... .++-+.++++.+++....-.-+.+.++.-+ +.... ..++.
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 34567899999999999997 566665421 134467888888876543322333333333 21110 00111
Q ss_pred H-HH-----HHHHHHHHh--ccCceEEEEecccc
Q 036761 243 L-AE-----RAVDIYNVL--KEKKFVLLLDDVWQ 268 (897)
Q Consensus 243 ~-~~-----~~~~l~~~l--~~~~~LlVlDdv~~ 268 (897)
. .+ ..-.+-+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 11 111233333 47899999999953
No 482
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.69 E-value=0.19 Score=50.65 Aligned_cols=122 Identities=17% Similarity=0.196 Sum_probs=67.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccC-CC----------CC---CEEEEEEe----CCcC--CH--------------
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLG-QG----------DF---DFLIWVVV----SKDL--QI-------------- 220 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~----------~f---~~~~wv~~----~~~~--~~-------------- 220 (897)
.-..++|+|+.|.|||||.+.+..-... ++ .+ ..+.||.= ...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 4479999999999999999999873321 00 01 24555531 1110 11
Q ss_pred --------HHHHHHHHHHhCCCCc---hhcc-ccHHHHHHHHHHHhccCceEEEEecccc------ccccccccccCCCC
Q 036761 221 --------EKIQEIIGKKVGLFND---SWMK-KNLAERAVDIYNVLKEKKFVLLLDDVWQ------RVAFTTVGVPIPPR 282 (897)
Q Consensus 221 --------~~~~~~i~~~l~~~~~---~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~------~~~~~~~~~~l~~~ 282 (897)
.+.....++++++..- .... ..-+.....|.+.|..++=|++||.--. ....-++...+...
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 1333444455544321 1111 1223334456778889999999998532 12222333333322
Q ss_pred CCCCcEEEEecCChhHh
Q 036761 283 DKSASKVVFTTRSTEVC 299 (897)
Q Consensus 283 ~~~~s~iivTtR~~~v~ 299 (897)
| .-|+++|-+-...
T Consensus 189 --g-~tIl~vtHDL~~v 202 (254)
T COG1121 189 --G-KTVLMVTHDLGLV 202 (254)
T ss_pred --C-CEEEEEeCCcHHh
Confidence 4 7899999886543
No 483
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.67 E-value=0.13 Score=55.55 Aligned_cols=65 Identities=25% Similarity=0.230 Sum_probs=48.1
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
..++|+++.+..+...+.. .+-+.+.|.+|+|||+||+.++.... -...++.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~--~~~vll~G~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLA--GGHVLLEGPPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHc--CCCEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHhcCc
Confidence 3478988888887766643 35678999999999999999998872 34556677776666665443
No 484
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.65 E-value=0.19 Score=55.12 Aligned_cols=90 Identities=22% Similarity=0.262 Sum_probs=53.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccHHH---
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNLAE--- 245 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 245 (897)
..-..++|.|..|+|||||.+.+++... -+.++++-+++.. .+.++....+..-++.... ..++....
T Consensus 160 ~~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 160 GEGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3557899999999999999999988652 3567777777654 3444443333221111100 01111111
Q ss_pred ---HHHHHHHHh--ccCceEEEEeccc
Q 036761 246 ---RAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 246 ---~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
..-.+-+++ +++++|+++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 111233333 5889999999994
No 485
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.62 E-value=0.18 Score=55.41 Aligned_cols=90 Identities=23% Similarity=0.265 Sum_probs=49.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCCch----hccccH-HH--
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFNDS----WMKKNL-AE-- 245 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~~-- 245 (897)
..-..++|.|..|+|||||++.+..... . +..+.+.++. ...+.++.+..+..-++.... ..+... ..
T Consensus 138 ~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 138 CRGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999998887652 1 2223333333 334555555443332221110 001111 11
Q ss_pred ---HHHHHHHHh--ccCceEEEEeccc
Q 036761 246 ---RAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 246 ---~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
..-.+-+++ +++.+|+++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112234444 5789999999984
No 486
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.59 E-value=0.05 Score=51.87 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhccc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
|.|.|.+|+|||||++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999988773
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.58 E-value=0.094 Score=56.77 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=61.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
....|.|.|+.|+||||+++.+.+.. .......++. +.++... ..... ..+-...+ ...........++..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i--~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e--vg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI--NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE--VGLDTLSFANALRAAL 192 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh--CcCCCCEEEE-EcCChhh--hccCc-cceEEccc--cCCCCcCHHHHHHHhh
Confidence 45789999999999999999988765 3333344443 2222111 00000 00000000 0111223456677888
Q ss_pred ccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChh
Q 036761 255 KEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 255 ~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+..+=.|++|.+.+.+.+...... ...| ..|+.|.-...
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a---a~tG-h~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA---AETG-HLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH---HHcC-CcEEEEEcCCC
Confidence 889999999999877665543222 1233 44665555443
No 488
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.58 E-value=0.25 Score=50.63 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=50.5
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCEE-EEEEeCCcC-CHHHHHHHHHHHhCCCCch----hccccH----
Q 036761 175 PVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFDFL-IWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMKKNL---- 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 243 (897)
.-..++|.|..|+|||+|| ..+.+.. +-+.+ +++-+++.. ...++.+.+...-...... ..++..
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4578999999999999996 5565543 22344 666666653 4556666665432111100 011111
Q ss_pred ------HHHHHHHHHHhccCceEEEEecccc
Q 036761 244 ------AERAVDIYNVLKEKKFVLLLDDVWQ 268 (897)
Q Consensus 244 ------~~~~~~l~~~l~~~~~LlVlDdv~~ 268 (897)
-..++.++. +++.+|+++||+-.
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChHH
Confidence 112233333 47899999999954
No 489
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.57 E-value=0.21 Score=58.04 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
++...++|+|+.|.|||||++.+..-..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4667999999999999999999976553
No 490
>PRK14527 adenylate kinase; Provisional
Probab=93.57 E-value=0.064 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|+|++|+||||+|+.+++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998776
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.56 E-value=0.064 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999875
No 492
>PHA02774 E1; Provisional
Probab=93.54 E-value=0.17 Score=56.89 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeC
Q 036761 162 SQLDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVS 215 (897)
Q Consensus 162 ~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 215 (897)
.-+..+..++.. .+..-+.|+|++|+|||.+|..+.+-.. ...+.|++..
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~~ 469 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEECc
Confidence 344556666644 3456899999999999999999998762 3445666653
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.53 E-value=0.054 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998876
No 494
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.50 E-value=0.39 Score=50.84 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=51.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCCch----hccccHH----
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFNDS----WMKKNLA---- 244 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 244 (897)
.....++|+|..|+|||||++.+..... -+..+..-++. ..++.++.......-++.... ..++...
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3557899999999999999999887652 23344444443 345555555554432221100 0011111
Q ss_pred --HHHHHHHHHh--ccCceEEEEeccc
Q 036761 245 --ERAVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 245 --~~~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
...-.+-+++ +++.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 1111223333 5889999999984
No 495
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.49 E-value=0.067 Score=46.13 Aligned_cols=23 Identities=35% Similarity=0.268 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLH 197 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~ 197 (897)
.-..++|+|+.|.|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44789999999999999999976
No 496
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.47 E-value=0.072 Score=51.88 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998765
No 497
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.47 E-value=0.076 Score=56.20 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHH
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKI 223 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 223 (897)
+++.+.|-||+||||+|...+-....++ ..++-++.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 6899999999999999988776654332 34555555554444443
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.46 E-value=0.05 Score=51.98 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhcc
Q 036761 179 VGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 499
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.45 E-value=0.072 Score=49.00 Aligned_cols=48 Identities=29% Similarity=0.362 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCC
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 235 (897)
..++.|+|.+|+||||+.+.+.... +.. .+ .+..++.-+++...++..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~---~i--------vNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKH---KI--------VNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhc---ee--------eeHhHHHHHHHHHhCCcc
Confidence 5799999999999999998877655 111 11 134566667777766543
No 500
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.45 E-value=0.28 Score=48.39 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.-.+++|.|+.|.|||||.+.++.-.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 355789999999999999999998754
Done!