Query 036761
Match_columns 897
No_of_seqs 846 out of 4185
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 08:23:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.6E-47 1.2E-51 438.8 16.4 310 158-489 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 5.1E-39 1.7E-43 371.6 18.4 285 156-482 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 2.9E-37 1E-41 396.4 28.4 312 152-489 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-34 5E-39 339.4 27.2 306 154-487 123-450 (591)
5 4fmz_A Internalin; leucine ric 99.9 9.7E-27 3.3E-31 254.2 17.6 306 515-872 39-344 (347)
6 4fmz_A Internalin; leucine ric 99.9 1.4E-24 4.8E-29 237.0 23.0 297 502-849 48-344 (347)
7 4ecn_A Leucine-rich repeat pro 99.9 4.4E-25 1.5E-29 264.0 16.0 319 515-872 443-838 (876)
8 4eco_A Uncharacterized protein 99.9 2.6E-25 8.9E-30 262.0 12.3 331 515-872 201-598 (636)
9 2id5_A Lingo-1, leucine rich r 99.9 5.1E-24 1.7E-28 243.3 22.5 291 543-870 33-329 (477)
10 1o6v_A Internalin A; bacterial 99.9 6.1E-24 2.1E-28 241.5 22.1 326 504-872 52-386 (466)
11 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-24 8.3E-29 250.9 18.0 184 506-692 13-210 (549)
12 3v47_A TOLL-like receptor 5B a 99.9 8.4E-24 2.9E-28 240.2 21.9 350 503-871 15-405 (455)
13 3o6n_A APL1; leucine-rich repe 99.9 6.3E-24 2.1E-28 235.7 19.2 301 518-871 43-349 (390)
14 3o6n_A APL1; leucine-rich repe 99.9 5.6E-24 1.9E-28 236.1 18.7 296 501-849 48-350 (390)
15 2id5_A Lingo-1, leucine rich r 99.9 1.6E-23 5.4E-28 239.2 20.8 309 503-849 16-331 (477)
16 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-23 1.1E-27 244.5 23.0 146 503-652 16-166 (606)
17 1o6v_A Internalin A; bacterial 99.9 1.9E-23 6.6E-28 237.3 19.4 311 518-871 44-363 (466)
18 3rgz_A Protein brassinosteroid 99.9 4.5E-24 1.5E-28 257.6 13.9 321 517-871 197-548 (768)
19 3vq2_A TLR4, TOLL-like recepto 99.9 7.2E-24 2.5E-28 250.0 15.3 350 515-871 51-555 (606)
20 3oja_B Anopheles plasmodium-re 99.9 2.5E-23 8.6E-28 243.8 18.8 301 518-871 49-355 (597)
21 3bz5_A Internalin-J, INLJ; leu 99.9 1.4E-23 4.8E-28 236.3 15.1 267 515-831 37-303 (457)
22 3oja_B Anopheles plasmodium-re 99.9 2.4E-23 8.1E-28 244.0 17.6 296 501-849 54-356 (597)
23 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-23 1.2E-27 239.1 18.7 353 502-871 4-478 (520)
24 2z63_A TOLL-like receptor 4, v 99.9 6E-23 2.1E-27 240.4 20.8 128 520-650 28-160 (570)
25 3v47_A TOLL-like receptor 5B a 99.9 3.7E-23 1.3E-27 234.8 16.7 316 523-871 13-381 (455)
26 4eco_A Uncharacterized protein 99.9 2.1E-23 7.1E-28 245.8 14.6 305 538-871 202-576 (636)
27 3t6q_A CD180 antigen; protein- 99.9 6.9E-23 2.3E-27 241.6 19.0 169 674-849 274-460 (606)
28 3rgz_A Protein brassinosteroid 99.9 2.5E-23 8.5E-28 251.1 15.4 96 754-861 631-727 (768)
29 4ecn_A Leucine-rich repeat pro 99.9 3.1E-23 1.1E-27 248.0 15.8 287 538-856 444-770 (876)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-22 4E-27 236.9 20.1 356 501-871 34-507 (562)
31 1xku_A Decorin; proteoglycan, 99.9 1.5E-22 5.2E-27 218.9 19.1 294 521-848 32-329 (330)
32 3j0a_A TOLL-like receptor 5; m 99.9 3.1E-22 1.1E-26 244.0 23.8 149 502-653 8-162 (844)
33 2z63_A TOLL-like receptor 4, v 99.9 5.6E-23 1.9E-27 240.7 16.4 349 515-871 47-528 (570)
34 2ft3_A Biglycan; proteoglycan, 99.9 5.4E-23 1.9E-27 222.6 14.7 294 521-849 34-331 (332)
35 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-22 5.7E-27 233.5 19.6 124 523-652 3-128 (520)
36 3t6q_A CD180 antigen; protein- 99.9 1.4E-22 4.7E-27 239.0 18.8 265 587-871 274-557 (606)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.3E-22 2.5E-26 230.1 21.8 147 521-690 32-181 (562)
38 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-22 1.4E-26 224.3 17.8 300 502-855 46-355 (457)
39 1ziw_A TOLL-like receptor 3; i 99.9 5.8E-22 2E-26 237.0 19.7 263 503-788 9-306 (680)
40 4fcg_A Uncharacterized protein 99.9 1.9E-22 6.6E-27 217.1 13.1 230 541-847 80-310 (328)
41 2z81_A CD282 antigen, TOLL-lik 99.9 3.5E-22 1.2E-26 232.6 15.8 127 515-644 45-177 (549)
42 4fcg_A Uncharacterized protein 99.9 6.8E-22 2.3E-26 212.8 13.9 239 565-881 79-319 (328)
43 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-22 1.4E-26 213.2 11.3 254 542-856 50-309 (313)
44 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-21 1.6E-25 233.8 20.6 311 523-871 7-391 (844)
45 1ziw_A TOLL-like receptor 3; i 99.9 3.9E-21 1.3E-25 229.8 18.8 245 523-790 7-284 (680)
46 1ogq_A PGIP-2, polygalacturona 99.8 3E-21 1E-25 206.5 13.2 250 520-831 50-308 (313)
47 1xku_A Decorin; proteoglycan, 99.8 2.9E-20 9.8E-25 201.1 18.2 217 541-788 30-250 (330)
48 2ft3_A Biglycan; proteoglycan, 99.8 2.3E-20 7.9E-25 201.9 15.6 285 542-872 33-331 (332)
49 2z80_A TOLL-like receptor 2, v 99.8 3.4E-20 1.2E-24 202.5 16.6 269 524-849 35-312 (353)
50 2z80_A TOLL-like receptor 2, v 99.8 2.1E-20 7E-25 204.2 14.3 264 502-789 35-312 (353)
51 4g8a_A TOLL-like receptor 4; l 99.8 4.4E-20 1.5E-24 219.2 18.0 142 506-651 39-185 (635)
52 3g06_A SSPH2 (leucine-rich rep 99.8 8.9E-20 3.1E-24 211.2 17.8 112 520-650 61-172 (622)
53 2z66_A Variable lymphocyte rec 99.8 3.3E-20 1.1E-24 198.3 12.9 219 523-789 10-234 (306)
54 3o53_A Protein LRIM1, AGAP0063 99.8 9.6E-21 3.3E-25 203.2 5.8 261 523-854 13-278 (317)
55 1jl5_A Outer protein YOPM; leu 99.8 3.5E-19 1.2E-23 200.2 18.8 116 520-650 111-226 (454)
56 3zyi_A Leucine-rich repeat-con 99.8 2.1E-19 7.1E-24 203.2 16.5 240 524-789 58-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 2.1E-19 7.3E-24 202.4 16.4 240 524-789 47-290 (440)
58 1ozn_A Reticulon 4 receptor; N 99.8 2.4E-19 8.2E-24 189.4 15.1 219 523-790 14-237 (285)
59 1jl5_A Outer protein YOPM; leu 99.8 6.5E-19 2.2E-23 198.0 19.5 205 503-739 76-287 (454)
60 4g8a_A TOLL-like receptor 4; l 99.8 8.9E-19 3E-23 207.9 18.5 334 515-870 71-576 (635)
61 3zyi_A Leucine-rich repeat-con 99.8 9.2E-19 3.1E-23 197.9 16.2 237 505-766 61-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 9.6E-19 3.3E-23 197.0 16.2 236 506-766 51-290 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.8 1.3E-18 4.6E-23 201.3 17.6 255 521-849 41-295 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-20 1.1E-24 199.1 3.5 264 543-876 11-277 (317)
65 2z66_A Variable lymphocyte rec 99.8 4.8E-19 1.7E-23 189.2 12.6 243 545-849 10-259 (306)
66 1wwl_A Monocyte differentiatio 99.8 2.9E-19 9.8E-24 191.2 8.2 244 519-788 42-306 (312)
67 3oja_A Leucine-rich immune mol 99.8 5.6E-19 1.9E-23 200.6 8.9 217 539-789 31-248 (487)
68 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-18 5.4E-23 183.1 10.9 214 506-766 19-236 (285)
69 3oja_A Leucine-rich immune mol 99.8 3.7E-19 1.3E-23 202.1 6.2 237 565-848 32-272 (487)
70 1h6u_A Internalin H; cell adhe 99.7 4.3E-18 1.5E-22 181.4 11.4 201 529-789 28-228 (308)
71 1wwl_A Monocyte differentiatio 99.7 1.2E-18 4.1E-23 186.4 3.8 247 538-849 39-307 (312)
72 3rfs_A Internalin B, repeat mo 99.7 1.8E-17 6.2E-22 173.4 11.4 207 565-839 39-247 (272)
73 1h6u_A Internalin H; cell adhe 99.7 5.7E-17 1.9E-21 172.7 15.1 191 516-765 37-227 (308)
74 3ogk_B Coronatine-insensitive 99.7 5.9E-18 2E-22 198.9 6.9 250 519-789 163-447 (592)
75 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.9E-21 167.9 16.0 215 529-789 16-235 (276)
76 3rfs_A Internalin B, repeat mo 99.7 1.8E-17 6.1E-22 173.4 9.5 218 521-794 20-238 (272)
77 1p9a_G Platelet glycoprotein I 99.7 8.5E-17 2.9E-21 169.5 14.5 199 518-766 8-206 (290)
78 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-18 6E-23 196.6 1.4 308 518-849 54-409 (461)
79 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6.2E-21 165.6 16.2 127 521-651 17-145 (270)
80 2xwt_C Thyrotropin receptor; s 99.7 3.2E-17 1.1E-21 168.1 9.6 103 543-649 32-140 (239)
81 2xwt_C Thyrotropin receptor; s 99.7 5.1E-17 1.7E-21 166.5 10.9 99 546-651 15-117 (239)
82 1z7x_W Ribonuclease inhibitor; 99.7 3.8E-18 1.3E-22 193.9 2.5 60 810-871 337-408 (461)
83 2o6q_A Variable lymphocyte rec 99.7 2.4E-16 8.2E-21 164.7 16.0 196 543-789 17-216 (270)
84 4ay9_X Follicle-stimulating ho 99.7 1.4E-16 4.9E-21 173.1 14.6 237 572-847 14-255 (350)
85 3ogk_B Coronatine-insensitive 99.7 3.7E-17 1.3E-21 192.1 10.4 306 518-855 190-529 (592)
86 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.9E-21 166.0 13.0 215 506-766 15-235 (276)
87 2ast_B S-phase kinase-associat 99.7 4.8E-17 1.7E-21 176.3 8.3 210 563-824 64-282 (336)
88 2qen_A Walker-type ATPase; unk 99.7 2E-15 6.9E-20 164.5 20.9 291 155-483 12-349 (350)
89 2p1m_B Transport inhibitor res 99.7 1.7E-17 6E-22 195.0 3.8 248 519-787 155-441 (594)
90 1p9a_G Platelet glycoprotein I 99.7 3.6E-16 1.2E-20 164.7 13.4 199 538-789 6-206 (290)
91 4ay9_X Follicle-stimulating ho 99.6 2.1E-16 7.2E-21 171.8 10.3 240 523-787 12-255 (350)
92 2fna_A Conserved hypothetical 99.6 8E-15 2.7E-19 160.2 22.2 289 155-482 13-356 (357)
93 2ast_B S-phase kinase-associat 99.6 7.1E-17 2.4E-21 175.0 5.7 221 522-788 49-282 (336)
94 2ca6_A RAN GTPase-activating p 99.6 8.4E-17 2.9E-21 177.9 4.8 247 527-825 16-314 (386)
95 2ca6_A RAN GTPase-activating p 99.6 1.1E-16 3.9E-21 176.8 5.8 237 516-790 28-315 (386)
96 1h6t_A Internalin B; cell adhe 99.6 4.5E-16 1.5E-20 164.2 9.2 169 564-789 43-211 (291)
97 1w5s_A Origin recognition comp 99.6 4.3E-15 1.5E-19 165.8 16.1 306 155-478 22-387 (412)
98 1m9s_A Internalin B; cell inva 99.6 4.6E-16 1.6E-20 180.0 8.2 120 522-650 23-142 (605)
99 1h6t_A Internalin B; cell adhe 99.6 3E-15 1E-19 157.8 13.8 151 516-692 42-192 (291)
100 4glp_A Monocyte differentiatio 99.6 3.9E-16 1.3E-20 166.7 6.4 203 566-788 90-304 (310)
101 4ezg_A Putative uncharacterize 99.6 5.9E-15 2E-19 146.0 12.8 153 517-692 41-195 (197)
102 2p1m_B Transport inhibitor res 99.6 9.8E-17 3.4E-21 188.6 -0.2 302 518-850 182-518 (594)
103 3m19_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 150.4 14.6 127 521-651 15-143 (251)
104 3goz_A Leucine-rich repeat-con 99.6 2.7E-15 9.1E-20 164.0 9.4 256 526-825 4-295 (362)
105 3m19_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 148.1 15.4 171 503-692 19-193 (251)
106 1m9s_A Internalin B; cell inva 99.6 2.8E-15 9.4E-20 173.5 9.0 172 514-715 37-208 (605)
107 3qfl_A MLA10; coiled-coil, (CC 99.5 3E-14 1E-18 124.6 10.8 84 9-100 1-84 (115)
108 3goz_A Leucine-rich repeat-con 99.5 1.4E-14 4.9E-19 158.2 9.7 159 520-692 22-210 (362)
109 2v9t_B SLIT homolog 2 protein 99.5 4.2E-14 1.4E-18 142.3 11.9 151 523-692 14-166 (220)
110 4glp_A Monocyte differentiatio 99.5 1.5E-14 5.3E-19 154.3 8.5 203 541-766 90-305 (310)
111 1xeu_A Internalin C; cellular 99.5 6.1E-14 2.1E-18 145.3 12.8 151 515-692 36-186 (263)
112 1xeu_A Internalin C; cellular 99.5 2.4E-14 8.1E-19 148.4 8.0 166 519-740 18-183 (263)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.3E-18 138.8 11.4 151 523-692 14-167 (220)
114 3cvr_A Invasion plasmid antige 99.5 1E-13 3.5E-18 158.4 11.4 38 757-795 209-247 (571)
115 3e6j_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 138.0 12.5 150 522-691 21-172 (229)
116 3e6j_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 136.8 13.3 142 506-651 27-171 (229)
117 2o6s_A Variable lymphocyte rec 99.4 1.3E-13 4.5E-18 137.6 9.5 149 525-692 12-162 (208)
118 2v9t_B SLIT homolog 2 protein 99.4 6.6E-13 2.2E-17 133.5 13.1 145 503-651 16-164 (220)
119 2o6s_A Variable lymphocyte rec 99.4 6.3E-13 2.2E-17 132.6 12.8 129 519-650 27-159 (208)
120 3cvr_A Invasion plasmid antige 99.4 4.1E-13 1.4E-17 153.4 12.5 182 521-766 60-241 (571)
121 4ezg_A Putative uncharacterize 99.4 6.3E-13 2.2E-17 131.3 12.0 144 502-651 48-193 (197)
122 2xot_A Amphoterin-induced prot 99.4 7.7E-13 2.6E-17 144.2 12.4 154 520-691 39-202 (361)
123 2qby_B CDC6 homolog 3, cell di 99.4 7.2E-12 2.5E-16 138.1 20.3 287 155-467 20-339 (384)
124 2xot_A Amphoterin-induced prot 99.4 6.3E-13 2.2E-17 144.9 10.8 176 522-715 20-200 (361)
125 2v70_A SLIT-2, SLIT homolog 2 99.4 1.6E-12 5.4E-17 130.7 12.4 143 505-651 18-165 (220)
126 2v1u_A Cell division control p 99.4 8.5E-12 2.9E-16 137.8 18.3 288 155-467 19-351 (387)
127 1a9n_A U2A', U2A'; complex (nu 99.4 7.2E-13 2.5E-17 128.2 8.3 140 536-692 13-154 (176)
128 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.8E-17 125.2 9.8 127 520-651 24-159 (168)
129 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.6E-17 123.2 8.5 123 520-647 17-148 (149)
130 1a9n_A U2A', U2A'; complex (nu 99.3 9.6E-13 3.3E-17 127.3 7.3 131 515-650 14-151 (176)
131 2ell_A Acidic leucine-rich nuc 99.3 1.6E-12 5.5E-17 124.7 8.6 137 540-693 22-162 (168)
132 1fnn_A CDC6P, cell division co 99.3 1E-10 3.5E-15 129.1 24.3 290 155-467 17-351 (389)
133 2qby_A CDC6 homolog 1, cell di 99.3 1.4E-11 4.9E-16 135.8 17.1 291 155-467 20-348 (386)
134 4b8c_D Glucose-repressible alc 99.3 6.7E-13 2.3E-17 157.6 6.3 155 520-694 173-332 (727)
135 2je0_A Acidic leucine-rich nuc 99.3 3.7E-12 1.3E-16 119.4 7.4 130 540-686 15-148 (149)
136 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 121.8 9.7 122 523-649 13-136 (193)
137 2o6r_A Variable lymphocyte rec 99.2 2.2E-11 7.5E-16 117.9 11.1 124 523-650 10-135 (177)
138 1w8a_A SLIT protein; signaling 99.2 1.5E-11 5E-16 120.7 9.6 124 523-650 11-137 (192)
139 1njg_A DNA polymerase III subu 99.2 5.1E-11 1.7E-15 122.3 14.0 197 155-362 23-231 (250)
140 2wfh_A SLIT homolog 2 protein 99.2 3E-11 1E-15 118.4 11.5 127 545-692 13-140 (193)
141 1w8a_A SLIT protein; signaling 99.2 8.7E-12 3E-16 122.3 7.3 127 545-692 11-140 (192)
142 1dce_A Protein (RAB geranylger 99.2 5.2E-12 1.8E-16 145.2 6.4 101 544-651 443-545 (567)
143 2chg_A Replication factor C sm 99.2 1.2E-10 4.1E-15 117.5 13.1 184 155-359 17-204 (226)
144 1dce_A Protein (RAB geranylger 99.2 4.1E-11 1.4E-15 137.7 10.7 121 521-646 442-567 (567)
145 4b8c_D Glucose-repressible alc 99.1 1.8E-11 6.2E-16 145.4 6.0 115 516-633 220-335 (727)
146 2o6r_A Variable lymphocyte rec 99.1 1.4E-10 4.7E-15 112.2 10.5 128 544-692 9-138 (177)
147 3sb4_A Hypothetical leucine ri 99.1 1.1E-10 3.9E-15 125.3 10.8 283 519-844 24-327 (329)
148 1ds9_A Outer arm dynein; leuci 99.1 3.7E-12 1.3E-16 125.9 -1.4 112 563-693 44-155 (198)
149 1ds9_A Outer arm dynein; leuci 99.1 9.7E-12 3.3E-16 122.8 -0.3 108 537-650 43-151 (198)
150 2r9u_A Variable lymphocyte rec 99.0 5E-10 1.7E-14 107.5 9.3 100 523-625 15-116 (174)
151 4fdw_A Leucine rich hypothetic 99.0 7.2E-09 2.5E-13 113.6 18.5 98 543-647 136-234 (401)
152 3g39_A Variable lymphocyte rec 99.0 7E-10 2.4E-14 106.2 9.1 101 523-626 12-114 (170)
153 2r9u_A Variable lymphocyte rec 99.0 6.9E-10 2.3E-14 106.6 8.7 100 545-650 15-116 (174)
154 1hqc_A RUVB; extended AAA-ATPa 99.0 9.4E-09 3.2E-13 110.0 18.5 271 155-466 12-324 (324)
155 1sxj_B Activator 1 37 kDa subu 99.0 1E-09 3.5E-14 117.6 10.6 185 155-360 21-211 (323)
156 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.7E-14 104.8 9.4 101 544-650 11-113 (170)
157 3sb4_A Hypothetical leucine ri 99.0 1.1E-09 3.6E-14 117.7 10.3 263 519-821 48-328 (329)
158 4fdw_A Leucine rich hypothetic 98.9 9.1E-09 3.1E-13 112.8 16.5 215 521-788 136-355 (401)
159 1iqp_A RFCS; clamp loader, ext 98.9 3.9E-09 1.3E-13 113.2 9.3 183 155-361 25-214 (327)
160 2ifg_A High affinity nerve gro 98.7 1.5E-08 5.1E-13 109.7 8.8 101 525-626 13-115 (347)
161 2chq_A Replication factor C sm 98.7 5.1E-08 1.8E-12 104.0 11.8 180 155-358 17-203 (319)
162 3te6_A Regulatory protein SIR3 98.7 1.4E-07 4.7E-12 98.3 14.5 168 157-327 22-212 (318)
163 2ifg_A High affinity nerve gro 98.7 3.7E-08 1.3E-12 106.5 10.1 103 545-652 11-116 (347)
164 1jr3_A DNA polymerase III subu 98.7 1.2E-07 4.2E-12 103.5 14.3 194 155-359 16-221 (373)
165 3un9_A NLR family member X1; l 98.6 8E-09 2.7E-13 112.1 3.0 158 521-692 73-253 (372)
166 4fs7_A Uncharacterized protein 98.6 2.8E-07 9.5E-12 101.4 13.0 38 609-648 157-194 (394)
167 1jbk_A CLPB protein; beta barr 98.6 9E-08 3.1E-12 93.6 7.8 46 155-200 22-67 (195)
168 3un9_A NLR family member X1; l 98.5 1.9E-08 6.6E-13 109.1 2.3 137 542-692 72-225 (372)
169 3bos_A Putative DNA replicatio 98.5 9.2E-08 3.1E-12 97.4 6.1 173 155-359 28-217 (242)
170 3h4m_A Proteasome-activating n 98.5 2.4E-06 8.1E-11 89.3 16.0 177 155-357 17-229 (285)
171 1sxj_A Activator 1 95 kDa subu 98.4 1.3E-06 4.3E-11 99.3 13.7 187 155-359 39-253 (516)
172 1sxj_D Activator 1 41 kDa subu 98.4 6.4E-07 2.2E-11 97.0 9.4 192 155-358 37-234 (353)
173 3pfi_A Holliday junction ATP-d 98.4 1.5E-05 5.2E-10 85.4 20.0 170 155-358 29-226 (338)
174 4fs7_A Uncharacterized protein 98.4 2.5E-06 8.5E-11 93.8 13.7 281 516-846 67-374 (394)
175 4gt6_A Cell surface protein; l 98.3 5.8E-06 2E-10 90.8 16.3 105 538-647 59-168 (394)
176 2z4s_A Chromosomal replication 98.3 1E-06 3.5E-11 97.6 10.2 182 155-357 105-304 (440)
177 1sxj_E Activator 1 40 kDa subu 98.3 1.8E-06 6.1E-11 93.4 11.9 194 155-359 14-237 (354)
178 1d2n_A N-ethylmaleimide-sensit 98.3 2.1E-05 7.3E-10 81.3 19.2 196 155-381 33-264 (272)
179 3pvs_A Replication-associated 98.3 2.9E-06 9.9E-11 93.7 12.4 176 154-358 25-214 (447)
180 2qz4_A Paraplegin; AAA+, SPG7, 98.3 2.1E-05 7E-10 80.9 17.3 180 155-358 6-221 (262)
181 3syl_A Protein CBBX; photosynt 98.2 4.3E-06 1.5E-10 88.5 11.8 151 156-327 32-218 (309)
182 1xwi_A SKD1 protein; VPS4B, AA 98.2 4.2E-05 1.4E-09 80.9 18.9 181 155-360 12-224 (322)
183 3u61_B DNA polymerase accessor 98.2 7.1E-06 2.4E-10 87.4 12.9 172 155-356 26-213 (324)
184 3d8b_A Fidgetin-like protein 1 98.2 2.4E-05 8.2E-10 84.2 17.1 180 155-360 84-296 (357)
185 3eie_A Vacuolar protein sortin 98.2 1.9E-05 6.4E-10 83.8 15.2 178 155-359 18-228 (322)
186 3uk6_A RUVB-like 2; hexameric 98.2 5.9E-06 2E-10 89.9 11.5 193 155-358 44-302 (368)
187 1a5t_A Delta prime, HOLB; zinc 98.2 2.5E-05 8.4E-10 83.3 15.5 167 161-358 8-204 (334)
188 3b9p_A CG5977-PA, isoform A; A 98.2 4.7E-05 1.6E-09 79.8 17.5 177 155-359 21-233 (297)
189 3e4g_A ATP synthase subunit S, 98.2 7.6E-07 2.6E-11 83.6 3.1 86 756-853 62-154 (176)
190 3e4g_A ATP synthase subunit S, 98.1 6.1E-07 2.1E-11 84.2 2.4 66 753-829 83-154 (176)
191 3vfd_A Spastin; ATPase, microt 98.1 6.9E-05 2.4E-09 81.8 18.8 179 155-358 115-325 (389)
192 1sxj_C Activator 1 40 kDa subu 98.1 7.1E-06 2.4E-10 88.0 10.7 173 155-355 25-208 (340)
193 2qp9_X Vacuolar protein sortin 98.1 2.5E-05 8.6E-10 83.9 14.1 179 155-359 51-261 (355)
194 3rw6_A Nuclear RNA export fact 98.1 1.9E-06 6.5E-11 87.5 4.7 108 538-648 137-260 (267)
195 2p65_A Hypothetical protein PF 98.1 1.2E-05 4.1E-10 77.7 10.0 46 155-200 22-67 (187)
196 2zan_A Vacuolar protein sortin 98.0 7.1E-05 2.4E-09 82.9 16.8 181 155-359 134-345 (444)
197 1l8q_A Chromosomal replication 98.0 2.5E-05 8.7E-10 83.0 12.3 174 155-354 11-203 (324)
198 2ra8_A Uncharacterized protein 98.0 4.8E-06 1.6E-10 89.4 6.5 16 676-691 250-265 (362)
199 3pxg_A Negative regulator of g 98.0 4.4E-05 1.5E-09 85.2 14.0 149 155-328 180-340 (468)
200 2ra8_A Uncharacterized protein 98.0 7.3E-06 2.5E-10 88.0 7.2 117 561-692 166-293 (362)
201 4gt6_A Cell surface protein; l 98.0 0.00013 4.4E-09 79.9 17.3 291 522-845 66-385 (394)
202 3cf0_A Transitional endoplasmi 98.0 0.0001 3.6E-09 77.2 15.7 174 155-354 15-223 (301)
203 1io0_A Tropomodulin; LRR prote 97.9 5.6E-06 1.9E-10 79.9 4.6 118 563-692 32-165 (185)
204 4b4t_J 26S protease regulatory 97.9 0.00022 7.5E-09 76.1 16.5 172 155-352 148-354 (405)
205 3n70_A Transport activator; si 97.9 1.4E-05 4.8E-10 73.6 6.2 45 156-200 2-48 (145)
206 2gno_A DNA polymerase III, gam 97.8 6.1E-05 2.1E-09 78.6 10.5 146 159-326 1-152 (305)
207 4b4t_L 26S protease subunit RP 97.8 0.00037 1.3E-08 75.6 16.3 172 155-352 181-387 (437)
208 3pxi_A Negative regulator of g 97.8 0.00015 5.2E-09 86.5 14.6 149 155-328 180-340 (758)
209 1qvr_A CLPB protein; coiled co 97.8 6.7E-05 2.3E-09 90.7 11.6 153 155-326 170-345 (854)
210 3hu3_A Transitional endoplasmi 97.8 0.00022 7.7E-09 79.4 14.7 177 155-357 204-413 (489)
211 4b4t_H 26S protease regulatory 97.8 0.00062 2.1E-08 73.6 17.4 172 155-352 209-415 (467)
212 1lv7_A FTSH; alpha/beta domain 97.8 0.00083 2.8E-08 68.5 17.8 175 155-356 12-222 (257)
213 4h09_A Hypothetical leucine ri 97.8 0.00029 1E-08 76.6 15.3 103 724-845 235-340 (379)
214 1io0_A Tropomodulin; LRR prote 97.7 2.1E-05 7.3E-10 75.8 4.9 111 538-650 32-162 (185)
215 1in4_A RUVB, holliday junction 97.7 0.0012 4E-08 70.3 18.8 170 155-358 25-222 (334)
216 1r6b_X CLPA protein; AAA+, N-t 97.7 0.00025 8.6E-09 84.8 15.1 153 155-326 186-362 (758)
217 4b4t_I 26S protease regulatory 97.7 0.00063 2.2E-08 72.8 16.1 171 155-351 182-387 (437)
218 4h09_A Hypothetical leucine ri 97.7 0.00072 2.5E-08 73.5 16.9 274 536-855 40-339 (379)
219 2r62_A Cell division protease 97.7 5.9E-05 2E-09 77.8 7.7 152 155-328 11-198 (268)
220 4b4t_M 26S protease regulatory 97.7 0.00036 1.2E-08 75.7 14.0 171 155-351 181-386 (434)
221 4b4t_K 26S protease regulatory 97.6 0.0008 2.7E-08 72.9 15.2 170 155-351 172-378 (428)
222 3ec2_A DNA replication protein 97.6 2.6E-05 9E-10 74.9 3.3 42 160-201 19-63 (180)
223 1ofh_A ATP-dependent HSL prote 97.6 0.00035 1.2E-08 73.6 12.3 46 155-200 15-74 (310)
224 3rw6_A Nuclear RNA export fact 97.5 7.7E-05 2.6E-09 75.6 5.8 79 540-621 168-258 (267)
225 3co5_A Putative two-component 97.5 3.3E-05 1.1E-09 70.9 2.7 46 155-200 4-51 (143)
226 2ce7_A Cell division protein F 97.5 0.00066 2.2E-08 75.0 13.5 171 155-352 16-221 (476)
227 4fcw_A Chaperone protein CLPB; 97.4 0.00044 1.5E-08 72.9 9.9 60 155-216 17-85 (311)
228 2bjv_A PSP operon transcriptio 97.4 0.0004 1.4E-08 71.2 9.0 60 155-216 6-67 (265)
229 2w58_A DNAI, primosome compone 97.4 0.00026 9E-09 69.2 7.2 58 155-214 25-90 (202)
230 2kjq_A DNAA-related protein; s 97.3 6.2E-05 2.1E-09 69.4 2.1 40 175-216 35-74 (149)
231 1ojl_A Transcriptional regulat 97.3 0.00048 1.6E-08 72.0 8.2 46 155-200 2-49 (304)
232 3cf2_A TER ATPase, transitiona 97.3 0.0019 6.6E-08 75.5 13.9 169 156-352 205-407 (806)
233 2c9o_A RUVB-like 1; hexameric 97.2 0.0014 4.9E-08 72.8 11.1 46 155-200 37-87 (456)
234 3pxi_A Negative regulator of g 97.1 0.00029 1E-08 84.0 5.3 60 155-216 491-559 (758)
235 2dhr_A FTSH; AAA+ protein, hex 97.1 0.0057 1.9E-07 67.9 14.5 168 155-352 31-236 (499)
236 2x8a_A Nuclear valosin-contain 97.0 0.011 3.7E-07 60.5 15.6 150 155-327 10-192 (274)
237 1iy2_A ATP-dependent metallopr 97.0 0.0048 1.6E-07 63.6 12.9 171 155-352 40-245 (278)
238 1ixz_A ATP-dependent metallopr 97.0 0.0072 2.5E-07 61.3 13.7 171 155-352 16-221 (254)
239 3t15_A Ribulose bisphosphate c 96.9 0.0059 2E-07 63.3 12.5 26 175-200 35-60 (293)
240 3m6a_A ATP-dependent protease 96.9 0.0044 1.5E-07 70.3 12.1 154 156-326 82-266 (543)
241 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0007 2.4E-08 69.6 3.8 70 175-268 122-193 (331)
242 1ypw_A Transitional endoplasmi 96.7 0.0071 2.4E-07 72.0 12.7 170 155-352 204-407 (806)
243 2cvh_A DNA repair and recombin 96.6 0.0048 1.6E-07 61.0 8.7 87 175-267 19-115 (220)
244 3hr8_A Protein RECA; alpha and 96.6 0.0048 1.7E-07 65.2 9.0 87 175-268 60-150 (356)
245 1g5t_A COB(I)alamin adenosyltr 96.6 0.0021 7.3E-08 61.0 5.4 115 176-297 28-164 (196)
246 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0035 1.2E-07 74.8 8.2 57 155-216 458-523 (758)
247 1n0w_A DNA repair protein RAD5 96.5 0.0089 3E-07 60.1 10.0 92 175-267 23-129 (243)
248 3io5_A Recombination and repai 96.5 0.0092 3.1E-07 61.1 9.8 87 177-268 29-122 (333)
249 2zr9_A Protein RECA, recombina 96.3 0.0088 3E-07 63.4 8.9 86 175-267 60-149 (349)
250 2z43_A DNA repair and recombin 96.3 0.014 4.9E-07 61.4 10.5 92 175-267 106-213 (324)
251 1xp8_A RECA protein, recombina 96.3 0.0099 3.4E-07 63.3 9.0 86 175-267 73-162 (366)
252 1u94_A RECA protein, recombina 96.2 0.0092 3.1E-07 63.3 8.4 86 175-267 62-151 (356)
253 1v5w_A DMC1, meiotic recombina 96.2 0.02 6.8E-07 60.8 10.9 92 175-267 121-229 (343)
254 1qvr_A CLPB protein; coiled co 96.1 0.0061 2.1E-07 73.5 7.1 45 156-200 559-612 (854)
255 2b8t_A Thymidine kinase; deoxy 96.1 0.0022 7.5E-08 63.0 2.6 113 175-296 11-126 (223)
256 1jr3_D DNA polymerase III, del 95.8 0.041 1.4E-06 58.4 11.2 163 168-357 10-183 (343)
257 2i1q_A DNA repair and recombin 95.8 0.023 8E-07 59.8 9.1 92 175-267 97-214 (322)
258 1rz3_A Hypothetical protein rb 95.8 0.0092 3.1E-07 58.0 5.5 42 159-200 2-46 (201)
259 3dm5_A SRP54, signal recogniti 95.7 0.046 1.6E-06 59.2 10.9 27 175-201 99-125 (443)
260 3rfe_A Platelet glycoprotein I 95.6 0.017 5.9E-07 51.3 6.1 53 571-626 12-67 (130)
261 2px0_A Flagellar biosynthesis 95.6 0.04 1.4E-06 56.8 9.8 87 175-266 104-191 (296)
262 1pzn_A RAD51, DNA repair and r 95.5 0.042 1.4E-06 58.3 9.8 93 175-268 130-242 (349)
263 3lda_A DNA repair protein RAD5 95.5 0.054 1.9E-06 58.3 10.6 91 175-266 177-282 (400)
264 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.034 1.2E-06 55.2 8.6 48 175-226 22-69 (235)
265 3c8u_A Fructokinase; YP_612366 95.4 0.014 4.9E-07 56.9 5.2 40 162-201 6-47 (208)
266 3ice_A Transcription terminati 95.3 0.018 6E-07 60.5 5.8 51 166-217 163-215 (422)
267 4a74_A DNA repair and recombin 95.2 0.082 2.8E-06 52.3 10.5 58 175-233 24-85 (231)
268 3bh0_A DNAB-like replicative h 95.1 0.061 2.1E-06 56.2 9.5 52 175-230 67-118 (315)
269 3rfe_A Platelet glycoprotein I 95.1 0.021 7.3E-07 50.7 5.1 54 594-650 11-66 (130)
270 2r44_A Uncharacterized protein 95.1 0.012 4.3E-07 62.2 4.2 44 155-200 27-70 (331)
271 1qhx_A CPT, protein (chloramph 95.1 0.011 3.9E-07 55.9 3.3 24 177-200 4-27 (178)
272 3kb2_A SPBC2 prophage-derived 95.0 0.012 4E-07 55.5 3.2 24 177-200 2-25 (173)
273 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.018 6.3E-07 63.9 5.1 45 155-201 22-66 (500)
274 3cf2_A TER ATPase, transitiona 94.9 0.075 2.6E-06 62.2 10.4 171 155-351 477-682 (806)
275 1sky_E F1-ATPase, F1-ATP synth 94.9 0.065 2.2E-06 58.3 9.0 52 176-228 151-203 (473)
276 2ck3_D ATP synthase subunit be 94.9 0.13 4.5E-06 55.7 11.2 63 167-230 143-207 (482)
277 1pgv_A TMD-1, tropomodulin TMD 94.8 0.04 1.4E-06 52.5 6.4 120 563-691 37-170 (197)
278 3e70_C DPA, signal recognition 94.8 0.13 4.5E-06 53.7 10.9 58 174-233 127-185 (328)
279 2dr3_A UPF0273 protein PH0284; 94.8 0.066 2.3E-06 53.6 8.4 40 175-216 22-61 (247)
280 2hf9_A Probable hydrogenase ni 94.8 0.024 8.3E-07 56.1 5.0 38 163-200 25-62 (226)
281 3lw7_A Adenylate kinase relate 94.8 0.014 4.8E-07 55.1 3.1 23 177-200 2-24 (179)
282 2r6a_A DNAB helicase, replicat 94.7 0.56 1.9E-05 51.7 16.4 60 164-228 193-252 (454)
283 3hws_A ATP-dependent CLP prote 94.7 0.026 8.8E-07 60.6 5.4 44 157-200 17-75 (363)
284 3vaa_A Shikimate kinase, SK; s 94.7 0.017 5.6E-07 56.0 3.5 26 175-200 24-49 (199)
285 1g8p_A Magnesium-chelatase 38 94.7 0.012 4.1E-07 62.9 2.7 46 155-200 24-69 (350)
286 1zp6_A Hypothetical protein AT 94.7 0.019 6.5E-07 55.1 3.8 26 175-200 8-33 (191)
287 1vma_A Cell division protein F 94.6 0.074 2.5E-06 55.0 8.3 90 175-267 103-196 (306)
288 1ly1_A Polynucleotide kinase; 94.6 0.019 6.4E-07 54.5 3.6 22 177-198 3-24 (181)
289 1kgd_A CASK, peripheral plasma 94.5 0.019 6.5E-07 54.6 3.4 25 176-200 5-29 (180)
290 1um8_A ATP-dependent CLP prote 94.5 0.033 1.1E-06 60.1 5.7 46 155-200 21-96 (376)
291 3trf_A Shikimate kinase, SK; a 94.5 0.019 6.6E-07 54.8 3.4 25 176-200 5-29 (185)
292 2p5t_B PEZT; postsegregational 94.5 0.034 1.2E-06 56.1 5.4 26 175-200 31-56 (253)
293 3kl4_A SRP54, signal recogniti 94.5 0.15 5E-06 55.3 10.5 90 175-266 96-188 (433)
294 2ga8_A Hypothetical 39.9 kDa p 94.5 0.038 1.3E-06 57.8 5.7 43 158-200 2-48 (359)
295 1kag_A SKI, shikimate kinase I 94.5 0.017 5.7E-07 54.5 2.8 24 177-200 5-28 (173)
296 2xxa_A Signal recognition part 94.5 0.2 6.8E-06 54.6 11.7 91 175-266 99-192 (433)
297 2wsm_A Hydrogenase expression/ 94.5 0.026 8.9E-07 55.6 4.3 41 160-200 14-54 (221)
298 2ffh_A Protein (FFH); SRP54, s 94.4 0.11 3.8E-06 56.2 9.4 89 175-266 97-189 (425)
299 3uie_A Adenylyl-sulfate kinase 94.4 0.025 8.4E-07 54.8 3.9 28 174-201 23-50 (200)
300 2yvu_A Probable adenylyl-sulfa 94.4 0.025 8.7E-07 54.0 3.9 27 175-201 12-38 (186)
301 2orw_A Thymidine kinase; TMTK, 94.4 0.0031 1E-07 60.3 -2.7 24 177-200 4-27 (184)
302 1nks_A Adenylate kinase; therm 94.3 0.023 7.7E-07 54.6 3.4 25 177-201 2-26 (194)
303 3t61_A Gluconokinase; PSI-biol 94.2 0.02 6.7E-07 55.6 2.7 25 176-200 18-42 (202)
304 1odf_A YGR205W, hypothetical 3 94.2 0.041 1.4E-06 56.6 5.2 28 174-201 29-56 (290)
305 3cmu_A Protein RECA, recombina 94.2 0.077 2.6E-06 67.9 8.5 86 175-267 1426-1515(2050)
306 1pgv_A TMD-1, tropomodulin TMD 94.2 0.049 1.7E-06 51.9 5.3 109 539-649 38-167 (197)
307 3tau_A Guanylate kinase, GMP k 94.1 0.03 1E-06 54.6 3.9 27 174-200 6-32 (208)
308 2rhm_A Putative kinase; P-loop 94.1 0.028 9.7E-07 53.9 3.7 25 176-200 5-29 (193)
309 3iij_A Coilin-interacting nucl 94.1 0.023 7.8E-07 54.0 3.0 25 176-200 11-35 (180)
310 1knq_A Gluconate kinase; ALFA/ 94.1 0.031 1E-06 52.7 3.8 26 175-200 7-32 (175)
311 1fx0_B ATP synthase beta chain 94.1 0.19 6.3E-06 54.8 10.2 62 168-230 156-219 (498)
312 4eun_A Thermoresistant glucoki 94.1 0.029 1E-06 54.3 3.7 27 174-200 27-53 (200)
313 2ze6_A Isopentenyl transferase 94.0 0.027 9.2E-07 56.8 3.5 24 177-200 2-25 (253)
314 1kht_A Adenylate kinase; phosp 94.0 0.025 8.6E-07 54.2 3.1 24 177-200 4-27 (192)
315 2qor_A Guanylate kinase; phosp 94.0 0.024 8.3E-07 55.1 3.0 26 175-200 11-36 (204)
316 1zuh_A Shikimate kinase; alpha 94.0 0.027 9.3E-07 52.7 3.3 26 175-200 6-31 (168)
317 1ex7_A Guanylate kinase; subst 94.0 0.024 8.1E-07 53.8 2.8 24 177-200 2-25 (186)
318 1via_A Shikimate kinase; struc 93.9 0.024 8.3E-07 53.5 2.7 24 177-200 5-28 (175)
319 3tr0_A Guanylate kinase, GMP k 93.9 0.035 1.2E-06 53.9 3.8 25 176-200 7-31 (205)
320 1tue_A Replication protein E1; 93.9 0.049 1.7E-06 51.9 4.6 39 162-200 43-82 (212)
321 1y63_A LMAJ004144AAA protein; 93.9 0.033 1.1E-06 53.1 3.5 25 175-199 9-33 (184)
322 1ukz_A Uridylate kinase; trans 93.8 0.037 1.3E-06 53.7 3.9 27 174-200 13-39 (203)
323 4gp7_A Metallophosphoesterase; 93.8 0.031 1.1E-06 52.5 3.2 23 175-197 8-30 (171)
324 2bdt_A BH3686; alpha-beta prot 93.8 0.034 1.2E-06 53.2 3.6 22 177-198 3-24 (189)
325 1uf9_A TT1252 protein; P-loop, 93.8 0.039 1.3E-06 53.5 4.0 26 174-199 6-31 (203)
326 1ye8_A Protein THEP1, hypothet 93.8 0.034 1.1E-06 52.6 3.4 23 178-200 2-24 (178)
327 1gvn_B Zeta; postsegregational 93.8 0.053 1.8E-06 55.8 5.1 26 175-200 32-57 (287)
328 2c95_A Adenylate kinase 1; tra 93.8 0.034 1.2E-06 53.5 3.5 26 175-200 8-33 (196)
329 3asz_A Uridine kinase; cytidin 93.8 0.037 1.3E-06 54.0 3.8 26 175-200 5-30 (211)
330 3umf_A Adenylate kinase; rossm 93.8 0.035 1.2E-06 54.2 3.5 27 174-200 27-53 (217)
331 1j8m_F SRP54, signal recogniti 93.7 0.14 4.9E-06 52.7 8.3 89 176-266 98-189 (297)
332 2iyv_A Shikimate kinase, SK; t 93.7 0.026 8.8E-07 53.8 2.5 24 177-200 3-26 (184)
333 1tev_A UMP-CMP kinase; ploop, 93.7 0.036 1.2E-06 53.3 3.6 25 176-200 3-27 (196)
334 2qt1_A Nicotinamide riboside k 93.7 0.04 1.4E-06 53.7 3.9 26 175-200 20-45 (207)
335 2j41_A Guanylate kinase; GMP, 93.7 0.039 1.3E-06 53.7 3.8 26 175-200 5-30 (207)
336 2jaq_A Deoxyguanosine kinase; 93.7 0.034 1.2E-06 53.9 3.4 23 178-200 2-24 (205)
337 3ney_A 55 kDa erythrocyte memb 93.7 0.038 1.3E-06 52.9 3.5 26 175-200 18-43 (197)
338 2qgz_A Helicase loader, putati 93.7 0.044 1.5E-06 57.0 4.4 41 161-201 134-177 (308)
339 1xjc_A MOBB protein homolog; s 93.6 0.04 1.4E-06 51.2 3.5 27 175-201 3-29 (169)
340 3a00_A Guanylate kinase, GMP k 93.6 0.03 1E-06 53.5 2.8 24 177-200 2-25 (186)
341 1g41_A Heat shock protein HSLU 93.6 0.044 1.5E-06 59.5 4.3 46 155-200 15-74 (444)
342 2if2_A Dephospho-COA kinase; a 93.6 0.036 1.2E-06 53.8 3.4 22 177-198 2-23 (204)
343 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.041 1.4E-06 55.8 3.8 25 176-200 4-28 (260)
344 1cke_A CK, MSSA, protein (cyti 93.6 0.037 1.3E-06 54.8 3.4 24 177-200 6-29 (227)
345 2bbw_A Adenylate kinase 4, AK4 93.6 0.038 1.3E-06 55.5 3.5 26 175-200 26-51 (246)
346 2bwj_A Adenylate kinase 5; pho 93.5 0.039 1.3E-06 53.3 3.4 25 176-200 12-36 (199)
347 3cm0_A Adenylate kinase; ATP-b 93.5 0.041 1.4E-06 52.5 3.5 25 176-200 4-28 (186)
348 1e6c_A Shikimate kinase; phosp 93.5 0.032 1.1E-06 52.4 2.7 24 177-200 3-26 (173)
349 3tlx_A Adenylate kinase 2; str 93.5 0.064 2.2E-06 53.7 5.0 42 159-200 10-53 (243)
350 2vli_A Antibiotic resistance p 93.5 0.028 9.6E-07 53.4 2.2 25 176-200 5-29 (183)
351 1lvg_A Guanylate kinase, GMP k 93.4 0.034 1.2E-06 53.7 2.8 25 176-200 4-28 (198)
352 2plr_A DTMP kinase, probable t 93.4 0.044 1.5E-06 53.5 3.7 26 176-201 4-29 (213)
353 2j37_W Signal recognition part 93.4 0.41 1.4E-05 53.0 11.7 27 175-201 100-126 (504)
354 1jjv_A Dephospho-COA kinase; P 93.4 0.043 1.5E-06 53.3 3.5 22 177-198 3-24 (206)
355 4a1f_A DNAB helicase, replicat 93.4 0.21 7.2E-06 52.2 8.8 53 175-231 45-97 (338)
356 1ls1_A Signal recognition part 93.4 0.19 6.6E-06 51.7 8.5 89 175-266 97-189 (295)
357 1qf9_A UMP/CMP kinase, protein 93.3 0.046 1.6E-06 52.4 3.6 25 176-200 6-30 (194)
358 1uj2_A Uridine-cytidine kinase 93.3 0.05 1.7E-06 54.9 3.8 27 174-200 20-46 (252)
359 2pt5_A Shikimate kinase, SK; a 93.2 0.047 1.6E-06 51.0 3.4 23 178-200 2-24 (168)
360 2grj_A Dephospho-COA kinase; T 93.2 0.051 1.8E-06 52.0 3.6 26 175-200 11-36 (192)
361 3fwy_A Light-independent proto 93.2 0.049 1.7E-06 56.6 3.7 41 174-216 46-86 (314)
362 2cdn_A Adenylate kinase; phosp 93.2 0.045 1.5E-06 53.0 3.3 26 175-200 19-44 (201)
363 1zd8_A GTP:AMP phosphotransfer 93.1 0.048 1.6E-06 54.0 3.4 25 176-200 7-31 (227)
364 2pbr_A DTMP kinase, thymidylat 93.1 0.051 1.7E-06 52.1 3.4 23 178-200 2-24 (195)
365 3aez_A Pantothenate kinase; tr 93.0 0.059 2E-06 56.0 4.0 28 174-201 88-115 (312)
366 2wwf_A Thymidilate kinase, put 93.0 0.053 1.8E-06 52.9 3.5 32 176-208 10-41 (212)
367 2jeo_A Uridine-cytidine kinase 93.0 0.061 2.1E-06 53.9 4.0 27 174-200 23-49 (245)
368 3tqc_A Pantothenate kinase; bi 93.0 0.082 2.8E-06 54.9 5.0 26 175-200 91-116 (321)
369 2yhs_A FTSY, cell division pro 93.0 0.32 1.1E-05 53.3 9.8 42 175-219 292-333 (503)
370 4e22_A Cytidylate kinase; P-lo 93.0 0.057 1.9E-06 54.4 3.7 26 175-200 26-51 (252)
371 1znw_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 52.6 3.6 27 174-200 18-44 (207)
372 3l0o_A Transcription terminati 92.9 0.19 6.6E-06 52.7 7.6 51 166-217 164-216 (427)
373 1nn5_A Similar to deoxythymidy 92.9 0.056 1.9E-06 52.9 3.5 26 175-200 8-33 (215)
374 1htw_A HI0065; nucleotide-bind 92.9 0.069 2.4E-06 49.2 3.9 27 174-200 31-57 (158)
375 2v54_A DTMP kinase, thymidylat 92.9 0.061 2.1E-06 52.1 3.7 25 176-200 4-28 (204)
376 2q6t_A DNAB replication FORK h 92.9 0.31 1.1E-05 53.6 9.9 52 175-229 199-250 (444)
377 1aky_A Adenylate kinase; ATP:A 92.9 0.055 1.9E-06 53.3 3.4 25 176-200 4-28 (220)
378 1z6g_A Guanylate kinase; struc 92.8 0.052 1.8E-06 53.3 3.1 26 175-200 22-47 (218)
379 3dl0_A Adenylate kinase; phosp 92.8 0.056 1.9E-06 53.0 3.4 23 178-200 2-24 (216)
380 3fb4_A Adenylate kinase; psych 92.8 0.052 1.8E-06 53.2 3.1 23 178-200 2-24 (216)
381 1zu4_A FTSY; GTPase, signal re 92.8 0.12 4.3E-06 53.7 6.1 28 174-201 103-130 (320)
382 1zak_A Adenylate kinase; ATP:A 92.7 0.052 1.8E-06 53.5 2.9 25 176-200 5-29 (222)
383 2f1r_A Molybdopterin-guanine d 92.7 0.04 1.4E-06 51.6 1.9 25 177-201 3-27 (171)
384 2z0h_A DTMP kinase, thymidylat 92.7 0.06 2.1E-06 51.8 3.3 23 178-200 2-24 (197)
385 1gtv_A TMK, thymidylate kinase 92.7 0.033 1.1E-06 54.6 1.4 24 177-200 1-24 (214)
386 1s96_A Guanylate kinase, GMP k 92.6 0.07 2.4E-06 52.3 3.7 26 175-200 15-40 (219)
387 3vr4_D V-type sodium ATPase su 92.6 0.16 5.6E-06 54.6 6.7 91 175-267 150-258 (465)
388 1rj9_A FTSY, signal recognitio 92.5 0.067 2.3E-06 55.3 3.6 27 175-201 101-127 (304)
389 2pez_A Bifunctional 3'-phospho 92.5 0.078 2.7E-06 50.1 3.8 25 176-200 5-29 (179)
390 1q57_A DNA primase/helicase; d 92.5 0.28 9.7E-06 55.0 9.0 52 175-229 241-292 (503)
391 1np6_A Molybdopterin-guanine d 92.5 0.074 2.5E-06 49.9 3.5 25 176-200 6-30 (174)
392 3k1j_A LON protease, ATP-depen 92.5 0.17 5.9E-06 58.1 7.3 44 155-200 41-84 (604)
393 3hjn_A DTMP kinase, thymidylat 92.4 0.26 8.8E-06 47.3 7.3 25 178-202 2-26 (197)
394 1m7g_A Adenylylsulfate kinase; 92.3 0.087 3E-06 51.4 3.9 27 174-200 23-49 (211)
395 3d3q_A TRNA delta(2)-isopenten 92.2 0.075 2.6E-06 55.4 3.5 24 177-200 8-31 (340)
396 1vht_A Dephospho-COA kinase; s 92.2 0.086 2.9E-06 51.7 3.8 23 176-198 4-26 (218)
397 3sr0_A Adenylate kinase; phosp 92.2 0.071 2.4E-06 51.6 3.1 23 178-200 2-24 (206)
398 3r20_A Cytidylate kinase; stru 92.2 0.07 2.4E-06 52.5 3.1 25 176-200 9-33 (233)
399 2f6r_A COA synthase, bifunctio 92.1 0.085 2.9E-06 54.1 3.8 24 175-198 74-97 (281)
400 3bgw_A DNAB-like replicative h 92.1 0.4 1.4E-05 52.5 9.4 51 175-229 196-246 (444)
401 2i3b_A HCR-ntpase, human cance 92.1 0.067 2.3E-06 51.0 2.8 24 177-200 2-25 (189)
402 3exa_A TRNA delta(2)-isopenten 92.1 0.092 3.1E-06 53.8 3.9 25 176-200 3-27 (322)
403 3nwj_A ATSK2; P loop, shikimat 92.1 0.066 2.3E-06 53.6 2.8 25 176-200 48-72 (250)
404 3cmu_A Protein RECA, recombina 92.1 0.25 8.5E-06 63.3 8.5 86 175-267 382-471 (2050)
405 3p32_A Probable GTPase RV1496/ 92.1 0.15 5.3E-06 54.1 5.9 38 164-201 65-104 (355)
406 3a8t_A Adenylate isopentenyltr 92.0 0.092 3.1E-06 54.5 3.8 26 175-200 39-64 (339)
407 3cmw_A Protein RECA, recombina 91.9 0.22 7.6E-06 62.9 7.8 87 175-268 382-472 (1706)
408 3crm_A TRNA delta(2)-isopenten 91.9 0.087 3E-06 54.5 3.5 24 177-200 6-29 (323)
409 3ake_A Cytidylate kinase; CMP 91.9 0.088 3E-06 51.1 3.4 23 178-200 4-26 (208)
410 2onk_A Molybdate/tungstate ABC 91.9 0.089 3.1E-06 52.3 3.4 26 174-200 23-48 (240)
411 3b9q_A Chloroplast SRP recepto 91.8 0.099 3.4E-06 54.0 3.9 27 175-201 99-125 (302)
412 3be4_A Adenylate kinase; malar 91.8 0.081 2.8E-06 51.9 3.1 24 177-200 6-29 (217)
413 2ehv_A Hypothetical protein PH 91.8 0.084 2.9E-06 53.0 3.3 24 175-198 29-52 (251)
414 3gqb_B V-type ATP synthase bet 91.8 0.2 6.8E-06 54.0 6.2 94 174-267 145-261 (464)
415 1sq5_A Pantothenate kinase; P- 91.8 0.1 3.5E-06 54.3 4.0 27 174-200 78-104 (308)
416 1e4v_A Adenylate kinase; trans 91.8 0.084 2.9E-06 51.6 3.1 23 178-200 2-24 (214)
417 3oaa_A ATP synthase subunit al 91.7 0.59 2E-05 50.8 9.8 95 168-267 153-264 (513)
418 2xb4_A Adenylate kinase; ATP-b 91.7 0.085 2.9E-06 52.0 3.1 23 178-200 2-24 (223)
419 1ak2_A Adenylate kinase isoenz 91.6 0.098 3.3E-06 51.9 3.5 25 176-200 16-40 (233)
420 3tif_A Uncharacterized ABC tra 91.6 0.094 3.2E-06 52.0 3.4 27 174-200 29-55 (235)
421 2pcj_A ABC transporter, lipopr 91.6 0.084 2.9E-06 52.0 3.0 26 175-200 29-54 (224)
422 3lnc_A Guanylate kinase, GMP k 91.6 0.068 2.3E-06 53.0 2.3 26 175-200 26-52 (231)
423 2qe7_A ATP synthase subunit al 91.5 0.32 1.1E-05 53.0 7.6 96 168-267 153-264 (502)
424 3end_A Light-independent proto 91.5 0.14 4.8E-06 53.3 4.7 41 174-216 39-79 (307)
425 3b85_A Phosphate starvation-in 91.4 0.078 2.7E-06 51.4 2.5 25 175-199 21-45 (208)
426 2dyk_A GTP-binding protein; GT 91.4 0.12 4.1E-06 47.5 3.7 24 177-200 2-25 (161)
427 4eaq_A DTMP kinase, thymidylat 91.4 0.19 6.6E-06 49.6 5.2 27 175-201 25-51 (229)
428 3cmw_A Protein RECA, recombina 91.3 0.27 9.2E-06 62.2 7.6 86 175-267 1430-1519(1706)
429 1c9k_A COBU, adenosylcobinamid 91.3 0.077 2.6E-06 49.7 2.1 36 178-219 1-36 (180)
430 2cbz_A Multidrug resistance-as 91.3 0.11 3.6E-06 51.7 3.4 27 174-200 29-55 (237)
431 3foz_A TRNA delta(2)-isopenten 91.3 0.11 3.9E-06 53.0 3.5 26 175-200 9-34 (316)
432 1oix_A RAS-related protein RAB 91.3 0.11 3.9E-06 49.6 3.4 25 176-200 29-53 (191)
433 2qmh_A HPR kinase/phosphorylas 91.2 0.11 3.9E-06 49.1 3.2 25 176-200 34-58 (205)
434 3gfo_A Cobalt import ATP-bindi 91.1 0.1 3.5E-06 53.1 3.0 26 175-200 33-58 (275)
435 1b0u_A Histidine permease; ABC 91.0 0.12 4E-06 52.3 3.3 27 174-200 30-56 (262)
436 2r9v_A ATP synthase subunit al 91.0 0.29 1E-05 53.3 6.6 96 168-267 166-277 (515)
437 1yrb_A ATP(GTP)binding protein 91.0 0.13 4.5E-06 52.0 3.7 27 175-201 13-39 (262)
438 2og2_A Putative signal recogni 91.0 0.13 4.6E-06 54.2 3.9 27 175-201 156-182 (359)
439 1a7j_A Phosphoribulokinase; tr 91.0 0.072 2.4E-06 54.8 1.7 26 175-200 4-29 (290)
440 1ji0_A ABC transporter; ATP bi 90.9 0.11 3.8E-06 51.7 3.0 26 175-200 31-56 (240)
441 2d2e_A SUFC protein; ABC-ATPas 90.9 0.12 4.1E-06 51.8 3.3 25 175-199 28-52 (250)
442 2wji_A Ferrous iron transport 90.9 0.13 4.5E-06 47.7 3.4 23 177-199 4-26 (165)
443 3io3_A DEHA2D07832P; chaperone 90.9 0.22 7.4E-06 52.5 5.3 49 171-219 13-61 (348)
444 1sgw_A Putative ABC transporte 90.8 0.095 3.3E-06 51.0 2.4 26 175-200 34-59 (214)
445 4g1u_C Hemin import ATP-bindin 90.8 0.11 3.8E-06 52.6 3.0 26 175-200 36-61 (266)
446 1ltq_A Polynucleotide kinase; 90.8 0.13 4.4E-06 53.4 3.6 23 177-199 3-25 (301)
447 2olj_A Amino acid ABC transpor 90.8 0.13 4.3E-06 52.0 3.3 27 174-200 48-74 (263)
448 2ged_A SR-beta, signal recogni 90.8 0.24 8.2E-06 47.2 5.3 26 175-200 47-72 (193)
449 1mv5_A LMRA, multidrug resista 90.8 0.13 4.6E-06 51.2 3.5 27 174-200 26-52 (243)
450 3f9v_A Minichromosome maintena 90.8 0.092 3.1E-06 60.0 2.6 46 155-200 295-351 (595)
451 1g6h_A High-affinity branched- 90.7 0.12 3.9E-06 52.2 3.0 26 175-200 32-57 (257)
452 2pze_A Cystic fibrosis transme 90.7 0.12 4E-06 51.1 3.0 26 175-200 33-58 (229)
453 2c61_A A-type ATP synthase non 90.7 0.38 1.3E-05 52.2 7.1 100 168-267 143-259 (469)
454 2ff7_A Alpha-hemolysin translo 90.7 0.12 4E-06 51.8 3.0 26 175-200 34-59 (247)
455 2v9p_A Replication protein E1; 90.7 0.14 4.8E-06 52.7 3.6 27 174-200 124-150 (305)
456 2zej_A Dardarin, leucine-rich 90.7 0.11 3.6E-06 49.4 2.6 22 178-199 4-25 (184)
457 3zvl_A Bifunctional polynucleo 90.7 0.13 4.5E-06 56.0 3.6 27 174-200 256-282 (416)
458 3iqw_A Tail-anchored protein t 90.7 0.27 9.2E-06 51.5 5.8 47 171-219 11-57 (334)
459 2eyu_A Twitching motility prot 90.7 0.16 5.4E-06 51.3 3.9 110 174-298 23-135 (261)
460 2zu0_C Probable ATP-dependent 90.6 0.15 5E-06 51.7 3.7 26 174-199 44-69 (267)
461 2f9l_A RAB11B, member RAS onco 90.5 0.15 5E-06 49.1 3.4 25 176-200 5-29 (199)
462 1vpl_A ABC transporter, ATP-bi 90.5 0.14 4.8E-06 51.5 3.3 27 174-200 39-65 (256)
463 2ghi_A Transport protein; mult 90.5 0.14 4.8E-06 51.6 3.4 27 174-200 44-70 (260)
464 2ixe_A Antigen peptide transpo 90.4 0.14 4.9E-06 51.9 3.4 27 174-200 43-69 (271)
465 2qi9_C Vitamin B12 import ATP- 90.4 0.13 4.5E-06 51.4 3.0 26 175-200 25-50 (249)
466 2ce2_X GTPase HRAS; signaling 90.3 0.15 5.1E-06 47.0 3.2 23 178-200 5-27 (166)
467 1nlf_A Regulatory protein REPA 90.3 0.14 4.8E-06 52.5 3.2 26 175-200 29-54 (279)
468 4hlc_A DTMP kinase, thymidylat 90.3 0.44 1.5E-05 45.9 6.6 31 177-209 3-33 (205)
469 4gzl_A RAS-related C3 botulinu 90.2 0.17 5.9E-06 48.8 3.7 42 159-200 13-54 (204)
470 2r8r_A Sensor protein; KDPD, P 90.2 0.23 7.9E-06 48.2 4.4 38 177-216 7-44 (228)
471 3v9p_A DTMP kinase, thymidylat 90.2 0.31 1.1E-05 47.7 5.5 27 175-201 24-50 (227)
472 3lv8_A DTMP kinase, thymidylat 90.2 0.31 1.1E-05 48.1 5.5 36 176-212 27-62 (236)
473 2nq2_C Hypothetical ABC transp 90.1 0.14 4.7E-06 51.4 2.9 26 175-200 30-55 (253)
474 1u0j_A DNA replication protein 90.1 0.29 1E-05 48.9 5.2 37 164-200 90-128 (267)
475 2yz2_A Putative ABC transporte 90.1 0.16 5.3E-06 51.5 3.4 27 174-200 31-57 (266)
476 3mfy_A V-type ATP synthase alp 90.1 0.75 2.5E-05 50.6 8.7 57 167-227 217-275 (588)
477 1z2a_A RAS-related protein RAB 90.1 0.16 5.5E-06 47.0 3.2 24 177-200 6-29 (168)
478 2ihy_A ABC transporter, ATP-bi 90.1 0.14 4.8E-06 52.2 3.0 26 175-200 46-71 (279)
479 1svm_A Large T antigen; AAA+ f 90.1 0.17 5.9E-06 53.8 3.8 27 174-200 167-193 (377)
480 1q3t_A Cytidylate kinase; nucl 90.0 0.19 6.4E-06 50.0 3.8 26 175-200 15-40 (236)
481 2ocp_A DGK, deoxyguanosine kin 90.0 0.19 6.4E-06 50.2 3.8 25 176-200 2-26 (241)
482 3upu_A ATP-dependent DNA helic 89.9 0.31 1.1E-05 53.9 5.8 42 159-201 29-70 (459)
483 4edh_A DTMP kinase, thymidylat 89.9 0.42 1.4E-05 46.4 6.1 33 176-209 6-38 (213)
484 1zj6_A ADP-ribosylation factor 89.8 0.29 9.9E-06 46.4 4.9 34 165-199 6-39 (187)
485 2wjg_A FEOB, ferrous iron tran 89.8 0.18 6.1E-06 47.9 3.3 23 177-199 8-30 (188)
486 3sop_A Neuronal-specific septi 89.8 0.17 5.9E-06 51.3 3.4 23 178-200 4-26 (270)
487 1moz_A ARL1, ADP-ribosylation 89.8 0.18 6.3E-06 47.4 3.4 35 165-199 6-41 (183)
488 1fx0_A ATP synthase alpha chai 89.8 0.33 1.1E-05 53.0 5.7 87 175-267 162-265 (507)
489 3con_A GTPase NRAS; structural 89.8 0.17 5.9E-06 48.1 3.2 24 177-200 22-45 (190)
490 1fzq_A ADP-ribosylation factor 89.7 0.21 7.3E-06 47.1 3.8 26 174-199 14-39 (181)
491 1cr0_A DNA primase/helicase; R 89.7 0.17 5.8E-06 52.3 3.3 53 174-229 33-85 (296)
492 2vp4_A Deoxynucleoside kinase; 89.6 0.16 5.3E-06 50.3 2.8 25 175-199 19-43 (230)
493 3eph_A TRNA isopentenyltransfe 89.6 0.17 5.8E-06 53.8 3.2 24 177-200 3-26 (409)
494 2nzj_A GTP-binding protein REM 89.5 0.17 5.8E-06 47.2 2.9 25 176-200 4-28 (175)
495 1g8f_A Sulfate adenylyltransfe 89.5 0.3 1E-05 54.0 5.3 44 158-201 375-420 (511)
496 1u8z_A RAS-related protein RAL 89.5 0.19 6.5E-06 46.4 3.2 24 177-200 5-28 (168)
497 1p9r_A General secretion pathw 89.5 0.34 1.2E-05 52.4 5.5 28 173-200 164-191 (418)
498 2gj8_A MNME, tRNA modification 89.5 0.18 6.3E-06 47.1 3.1 24 177-200 5-28 (172)
499 4tmk_A Protein (thymidylate ki 89.5 0.38 1.3E-05 46.7 5.4 26 177-202 4-29 (213)
500 1cp2_A CP2, nitrogenase iron p 89.4 0.32 1.1E-05 49.3 5.1 38 177-216 2-39 (269)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.6e-47 Score=438.77 Aligned_cols=310 Identities=15% Similarity=0.131 Sum_probs=249.8
Q ss_pred ccchHHHHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHh--cccCCCCCCEEEEEEeCCcC--CHHHHHHHHHHH
Q 036761 158 VGMQSQLDKVWSCLVEE---PVGIVGLYGMGGVGKTTLLTHLHN--KFLGQGDFDFLIWVVVSKDL--QIEKIQEIIGKK 230 (897)
Q Consensus 158 vGr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 230 (897)
|||++++++|.++|..+ ..++|+|+||||+||||||+++|+ +.+++.+|++++||++++.+ +...++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999653 689999999999999999999998 56678999999999999985 899999999999
Q ss_pred hCCCCc-----hhccccHHHHHHHHHHHhccC-ceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhhcC-
Q 036761 231 VGLFND-----SWMKKNLAERAVDIYNVLKEK-KFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWMG- 303 (897)
Q Consensus 231 l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~~- 303 (897)
++.... .....+.+.+...+++.++++ ||||||||||+..++ .+. . ..| |+||||||+..++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~----~-~~g-s~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA----Q-ELR-LRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH----H-HTT-CEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc----c-cCC-CEEEEEcCCHHHHHHcCC
Confidence 986521 112334567789999999996 999999999997754 111 1 144 99999999999988775
Q ss_pred CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHcccCC
Q 036761 304 AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQTSAS 383 (897)
Q Consensus 304 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 383 (897)
...+|+|++|+.+|||+||.++++... .++++.+++++|+++|+|+||||+++|+.|+.+ + |... +.+.+..+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 446799999999999999999987653 247788899999999999999999999999764 2 5443 34433322
Q ss_pred CCCCChHHHHHHHHHhhCCCCCccchhhhh-----------hhccCCCCcccChhhHHHHHHhc--CccccCC-cchhhh
Q 036761 384 EFPGLENDVLRVLKFSYDSLPDDTTRSCLL-----------YCCLFPEDYRIYKENLIDCWIGE--GFLKVTG-KYEVQD 449 (897)
Q Consensus 384 ~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~li~~w~ae--g~i~~~~-~~~~~~ 449 (897)
... ...+.+++.+||+.||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+.... +...++
T Consensus 357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 111 13577889999999998 8999999 999999999999 8999999 9998765 346677
Q ss_pred hHHHHHHHHHHhcccccc---CCceEEechhHHHHHHHHHhcc
Q 036761 450 KGHTILGNIVHACLLEEE---GDDVVKMHDLIRDMTLWIARDT 489 (897)
Q Consensus 450 ~~~~~l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~~~ 489 (897)
.++ ||++|+++||++.. ...+|+|||+||++|+++++++
T Consensus 430 ~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 430 VAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 777 99999999999986 3468999999999999888763
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=5.1e-39 Score=371.61 Aligned_cols=285 Identities=18% Similarity=0.263 Sum_probs=230.8
Q ss_pred CCccchHHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCE-EEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 156 PTVGMQSQLDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDF-LIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
..|||++++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 359999999999999976 56899999999999999999999988766788976 9999999999988888888775431
Q ss_pred CC---c-h-----hccccHHHHHHHHHHHh---ccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhh
Q 036761 234 FN---D-S-----WMKKNLAERAVDIYNVL---KEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW 301 (897)
Q Consensus 234 ~~---~-~-----~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~ 301 (897)
.. . . ....+.+.+...+++.+ .++|+||||||||+...|+.+. .| |+||||||++.++..
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pG-SRILVTTRd~~Va~~ 280 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LS-CKILLTTRFKQVTDF 280 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SS-CCEEEECSCSHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CC-eEEEEeccChHHHHh
Confidence 10 0 0 01223455667777766 6899999999999988887652 34 999999999998764
Q ss_pred cCCCceEEcC------CCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCC-ChHHHHHH
Q 036761 302 MGAHKNFEVG------CLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKK-TPEEWRDA 374 (897)
Q Consensus 302 ~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~-~~~~w~~~ 374 (897)
+.....|.++ +|+.+|||+||.+..+.. . .++..+| |+|+||||+++|+.|+.+. +.++|+..
T Consensus 281 l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~ 350 (1221)
T 1vt4_I 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV 350 (1221)
T ss_dssp HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC
T ss_pred cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC
Confidence 4433356666 999999999999985432 1 1233343 9999999999999999863 67888752
Q ss_pred HHHHcccCCCCCCChHHHHHHHHHhhCCCCCccc-hhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHH
Q 036761 375 IKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTT-RSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHT 453 (897)
Q Consensus 375 ~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~ 453 (897)
....+..++.+||+.||+ +. |.||++||+||+++.|+++.++.+|+++| ++.++.
T Consensus 351 -------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe~ 406 (1221)
T 1vt4_I 351 -------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVMV 406 (1221)
T ss_dssp -------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHHH
T ss_pred -------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHHH
Confidence 125899999999999999 78 99999999999999999999999999887 235788
Q ss_pred HHHHHHHhcccccc-CCceEEechhHHHHH
Q 036761 454 ILGNIVHACLLEEE-GDDVVKMHDLIRDMT 482 (897)
Q Consensus 454 ~l~~L~~~~ll~~~-~~~~~~mHdlv~~~a 482 (897)
++++|+++||++.. ....|+|||++++++
T Consensus 407 ~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 407 VVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999999986 467899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.9e-37 Score=396.36 Aligned_cols=312 Identities=20% Similarity=0.252 Sum_probs=254.3
Q ss_pred CCCCCCccchHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHhcccC-CC-CCCEEEEEEeCCcCC--HHHHHH
Q 036761 152 RPIEPTVGMQSQLDKVWSCLV--EEPVGIVGLYGMGGVGKTTLLTHLHNKFLG-QG-DFDFLIWVVVSKDLQ--IEKIQE 225 (897)
Q Consensus 152 ~~~~~~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~-~f~~~~wv~~~~~~~--~~~~~~ 225 (897)
.+...||||++++++|.++|. ++..++|+|+||||+||||||+++|++.+. .. .|+.++|+++++..+ ....+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 200 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ 200 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHH
Confidence 344679999999999999995 357899999999999999999999998543 44 447888999998543 444566
Q ss_pred HHHHHhCCCCc--hhccccHHHHHHHHHHHhccC--ceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhh
Q 036761 226 IIGKKVGLFND--SWMKKNLAERAVDIYNVLKEK--KFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGW 301 (897)
Q Consensus 226 ~i~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~ 301 (897)
.++..+..... .....+.+++...++..+.++ |+||||||||+...|..+ ..+ |+||||||++.++..
T Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~-~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQ-CQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSS-CEEEEEESSTTTTTT
T ss_pred HHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCC-CEEEEEcCCHHHHHh
Confidence 77777764331 123456788889999999887 999999999998877765 334 999999999999844
Q ss_pred -cCCCceEEcCC-CChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHc
Q 036761 302 -MGAHKNFEVGC-LSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQ 379 (897)
Q Consensus 302 -~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 379 (897)
++....+++.+ |+.+|+++||...++... +...+++++|+++|+|+||||+++|++|+.+. ..|..+++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45667899996 999999999999986433 33456799999999999999999999998754 46998888886
Q ss_pred ccCCCC-----CCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHH
Q 036761 380 TSASEF-----PGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTI 454 (897)
Q Consensus 380 ~~~~~~-----~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~ 454 (897)
...+.. ....+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ ++.++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~ 414 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDI 414 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHH
Confidence 654321 11225799999999999999 899999999999999999999999999664 3677899
Q ss_pred HHHHHHhccccccC---CceEEechhHHHHHHHHHhcc
Q 036761 455 LGNIVHACLLEEEG---DDVVKMHDLIRDMTLWIARDT 489 (897)
Q Consensus 455 l~~L~~~~ll~~~~---~~~~~mHdlv~~~a~~~~~~~ 489 (897)
+++|+++||++... ..+|+||++||++++..+.++
T Consensus 415 l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 415 LQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999762 336999999999999987664
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=339.45 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=239.4
Q ss_pred CCCCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCC-CEEEEEEeCCcCCHHHHHHH---
Q 036761 154 IEPTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLG-QGDF-DFLIWVVVSKDLQIEKIQEI--- 226 (897)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~~~--- 226 (897)
...||||+.++++|.++|.. +..++|+|+||||+||||||++++++... ..+| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 36799999999999999974 56789999999999999999999988654 5678 68999999875 33333333
Q ss_pred HHHHhCCCC--chhccccHHHHHHHHHHHhcc--CceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhhhc
Q 036761 227 IGKKVGLFN--DSWMKKNLAERAVDIYNVLKE--KKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCGWM 302 (897)
Q Consensus 227 i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~~~ 302 (897)
++..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..+ ++||||||+..++..+
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~-~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQ-CQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSS-CEEEEEESCGGGGTTC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCC-CeEEEECCCcHHHHhc
Confidence 344554211 112345667788888888877 7899999999987766543 234 9999999999887654
Q ss_pred CCCceEEc---CCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhcCCChHHHHHHHHHHc
Q 036761 303 GAHKNFEV---GCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMACKKTPEEWRDAIKVLQ 379 (897)
Q Consensus 303 ~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~~~~~~~w~~~~~~l~ 379 (897)
. ...+++ ++|+.+|+++||...++... +...+.+.+|+++|+|+||||..+|+.++.+. ..|..+++.+.
T Consensus 274 ~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 274 M-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp C-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred C-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 3 334554 58999999999999987532 12234689999999999999999999998753 46998888887
Q ss_pred ccCCC-----CCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCccccCCcchhhhhHHHH
Q 036761 380 TSASE-----FPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKVTGKYEVQDKGHTI 454 (897)
Q Consensus 380 ~~~~~-----~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~~~~~~~~~~~~~~ 454 (897)
..... .......+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++ .+.+..+
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~~ 414 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVEDI 414 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHHH
Confidence 65321 112235899999999999999 899999999999999999999999999653 2457789
Q ss_pred HHHHHHhcccccc---CCceEEechhHHHHHHHHHh
Q 036761 455 LGNIVHACLLEEE---GDDVVKMHDLIRDMTLWIAR 487 (897)
Q Consensus 455 l~~L~~~~ll~~~---~~~~~~mHdlv~~~a~~~~~ 487 (897)
+++|+++||++.. ....|+||+++|++++....
T Consensus 415 l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 415 LQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 9999999999865 23589999999999998743
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=9.7e-27 Score=254.17 Aligned_cols=306 Identities=18% Similarity=0.205 Sum_probs=241.3
Q ss_pred cccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 515 NVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
....++++++|++.++.+..++.+..+++|++|+++ ++.+..++. +..+++|++|++++| .++.+| .+..+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~-~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLN-GNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEcc-CCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 345667899999999999999888999999999999 667888876 889999999999999 788876 689999999
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHh
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEAL 674 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (897)
+|++++|.++.+|. +..+++|++|++++|.....++. +..+++|++|++.+|..... ..+
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----------------~~~ 173 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV-----------------TPI 173 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------GGG
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc-----------------hhh
Confidence 99999999999877 88999999999999976666665 89999999999998875421 127
Q ss_pred cCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCC
Q 036761 675 RGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDF 754 (897)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l 754 (897)
..+++|+.|++++|.+..++. ....++|+.|++.++.... .. .+..+++|++|++++|.. ..+++ ...+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l-~~~~~---~~~l 242 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKI-TDLSP---LANL 242 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCC-CCCGG---GTTC
T ss_pred ccCCCCCEEEccCCccccccc----ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCcc-CCCcc---hhcC
Confidence 788999999999998877654 3345688999998876432 22 267789999999998854 33322 4578
Q ss_pred CCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCC
Q 036761 755 RSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRP 834 (897)
Q Consensus 755 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 834 (897)
++|++|++++| .++.++.+..+++|++|++++|. +.++ ..+..+++|+.|++++|+.....+..+
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDI-------------SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCC-------------GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCC-------------hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 99999999998 67778888889999999999973 3333 135678999999999986544444556
Q ss_pred CCCCCcceeeecCCccCCCCCCCCCcccccceEEEehh
Q 036761 835 LPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYR 872 (897)
Q Consensus 835 ~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c~ 872 (897)
..+++|+.|++++|+ ++.+|.......++.+++++|+
T Consensus 308 ~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp HTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred hccccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 678999999999986 6666543333445778877763
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.4e-24 Score=236.98 Aligned_cols=297 Identities=17% Similarity=0.209 Sum_probs=241.2
Q ss_pred EEEEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS 581 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~ 581 (897)
.+...+..+...+.+..++++++|++++|.+..++.+..+++|++|+++ ++.+..++. |..+++|++|++++| .++
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 3444555666667778889999999999999999889999999999999 667888763 899999999999999 788
Q ss_pred ccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCC
Q 036761 582 SFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDS 661 (897)
Q Consensus 582 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 661 (897)
.+|. +..+++|++|++++|.....+..+..+++|++|++++|.. ..++. +..+++|++|++++|....
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~-------- 191 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIED-------- 191 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCcccc--------
Confidence 8875 8999999999999996554555699999999999999985 66665 8899999999999987543
Q ss_pred ccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCC
Q 036761 662 DLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEE 741 (897)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 741 (897)
. ..+..+++|+.|++++|.+..... ...+++|+.|++++|.... .+ .+..+++|++|++++|.
T Consensus 192 --------~-~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~- 254 (347)
T 4fmz_A 192 --------I-SPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITD-LS--PLANLSQLTWLEIGTNQ- 254 (347)
T ss_dssp --------C-GGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSC-
T ss_pred --------c-ccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCC-Cc--chhcCCCCCEEECCCCc-
Confidence 1 227889999999999999877543 3445689999999987432 32 27789999999999984
Q ss_pred ccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeec
Q 036761 742 LEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRL 821 (897)
Q Consensus 742 l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l 821 (897)
+..+ .. ...+++|+.|++++| .++.++.+..+++|+.|++++|......+. .+..+++|+.|++
T Consensus 255 l~~~--~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~~l~~L~~L~L 318 (347)
T 4fmz_A 255 ISDI--NA-VKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIGGLTNLTTLFL 318 (347)
T ss_dssp CCCC--GG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHHTCTTCSEEEC
T ss_pred cCCC--hh-HhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------HhhccccCCEEEc
Confidence 4433 22 567999999999999 788888899999999999999864333222 4667899999999
Q ss_pred ccccccccccCCCCCCCCcceeeecCCc
Q 036761 822 GGLTVLKSIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 822 ~~~~~l~~~~~~~~~l~~L~~L~i~~C~ 849 (897)
++|+ ++.++. ...+++|+.|++++|+
T Consensus 319 ~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 319 SQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCc-cccccC-hhhhhccceeehhhhc
Confidence 9986 555544 6779999999999985
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=4.4e-25 Score=263.98 Aligned_cols=319 Identities=13% Similarity=0.128 Sum_probs=223.6
Q ss_pred cccccccceEeecccccccc------------------ccc-cc--CCccceeeehhccccccccchhhhcCCCcccEEE
Q 036761 515 NVREWENARRFSLMETQIRT------------------LSA-VP--TCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLN 573 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 573 (897)
.+..+++++.|++++|.+.. +|. +. ++++|++|+|++|+....+|.. |.++++|++|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEE
Confidence 46677889999999999887 664 34 7899999999955556667754 88999999999
Q ss_pred ccCCCCCc--ccCccccCcc-------CCCEeeccCCCccccCh--hhhcCCcCcEecCCCCccccccChhhhhcCCccc
Q 036761 574 LSGARRMS--SFPLGISVLV-------SLQHLDLSGTAIRELPK--ELNALENLQCLNLEETHFLITIPRQLISSFSSLI 642 (897)
Q Consensus 574 Ls~~~~~~--~lp~~i~~L~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 642 (897)
|++|..++ .+|..++.+. +|++|+|++|.++.+|. .++++++|++|++++|.+ ..+| . ++++++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcCCCcce
Confidence 99994255 4887777666 99999999999999998 899999999999999985 4888 3 88999999
Q ss_pred eeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC-CCEEEEEeCCcccHHHHHhc----------------------
Q 036761 643 VLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH-LEVLSLTLNNFQDLQCVLKS---------------------- 699 (897)
Q Consensus 643 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---------------------- 699 (897)
+|++++|.... .+..+..+++ |+.|++++|.+..++.....
T Consensus 599 ~L~Ls~N~l~~----------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 599 DLKLDYNQIEE----------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp EEECCSSCCSC----------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred EEECcCCcccc----------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence 99998887543 2233444444 55555555544433211100
Q ss_pred ----hh--ccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCc-------CCCCccEEEEeCCC
Q 036761 700 ----KE--LRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPF-------DFRSLKKIQIYGCH 766 (897)
Q Consensus 700 ----~~--~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~-------~l~~L~~L~L~~c~ 766 (897)
.. ...+|+.|++++|... .++...+..+++|+.|++++|. +..++... .. ++++|+.|+|++|
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~-~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENS-LKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTS-SSCTTSCCTTGGGCCEEECCSS-
T ss_pred chhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHH-hccccccccccCCccEEECCCC-
Confidence 00 1125666666665532 3333334467788888888774 33443322 21 2238888888888
Q ss_pred CCCCCc-ccc--cCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccc------ccccccccCCCCCC
Q 036761 767 RLKDLT-FLL--FAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGG------LTVLKSIYKRPLPF 837 (897)
Q Consensus 767 ~l~~l~-~l~--~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~l 837 (897)
.++.+| .+. .+++|+.|+|++|. +..++ ..+..+++|+.|+|++ |.....+|..+..+
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccchHHhhhccCCCcCEEEeCCCC-CCccc------------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 566666 344 78888888888864 33333 2567889999999976 44456677778889
Q ss_pred CCcceeeecCCccCCCCCCCCCcccccceEEEehh
Q 036761 838 PCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYR 872 (897)
Q Consensus 838 ~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c~ 872 (897)
++|+.|++++|. ++.+|.... .+++.|++++|+
T Consensus 806 ~~L~~L~Ls~N~-L~~Ip~~l~-~~L~~LdLs~N~ 838 (876)
T 4ecn_A 806 PSLIQLQIGSND-IRKVDEKLT-PQLYILDIADNP 838 (876)
T ss_dssp SSCCEEECCSSC-CCBCCSCCC-SSSCEEECCSCT
T ss_pred CCCCEEECCCCC-CCccCHhhc-CCCCEEECCCCC
Confidence 999999999975 588998755 466889999885
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=2.6e-25 Score=262.01 Aligned_cols=331 Identities=14% Similarity=0.121 Sum_probs=200.1
Q ss_pred cccccccceEeecccccccc------------------ccc-cc--CCccceeeehhccccccccchhhhcCCCcccEEE
Q 036761 515 NVREWENARRFSLMETQIRT------------------LSA-VP--TCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLN 573 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~ 573 (897)
.+..+++++.|++++|.+.. +|. +. ++++|++|++++|.....+|.. |.++++|++|+
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ 279 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLIN 279 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEE
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEE
Confidence 34556677777777777776 553 34 6777777777744444555543 67777777777
Q ss_pred ccCCCCCc--ccCccccCc------cCCCEeeccCCCccccCh--hhhcCCcCcEecCCCCccccccChhhhhcCCccce
Q 036761 574 LSGARRMS--SFPLGISVL------VSLQHLDLSGTAIRELPK--ELNALENLQCLNLEETHFLITIPRQLISSFSSLIV 643 (897)
Q Consensus 574 Ls~~~~~~--~lp~~i~~L------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 643 (897)
|++|..++ .+|..++.+ ++|++|++++|.++.+|. .++++++|++|++++|.+.+.+| . ++.+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCE
Confidence 77773244 477766665 777777777777777777 77777777777777777544677 3 677777777
Q ss_pred eeccccCCCCCCCC-----C------CCCccccCccchhHHhcCC--CCCCEEEEEeCCcccHHHHHhchh-------cc
Q 036761 644 LRMFGVGDWSPNGK-----K------NDSDLFSGGDLLVEALRGL--EHLEVLSLTLNNFQDLQCVLKSKE-------LR 703 (897)
Q Consensus 644 L~l~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~-------~~ 703 (897)
|++++|....+... . ...+.+. ..+..+..+ ++|+.|+++.|.+..... .... ..
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~---~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLK---YIPNIFDAKSVSVMSAIDFSYNEIGSVDG--KNFDPLDPTPFKG 432 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCS---SCCSCCCTTCSSCEEEEECCSSCTTTTTT--CSSCTTCSSCCCC
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCc---ccchhhhhcccCccCEEECcCCcCCCcch--hhhcccccccccC
Confidence 77776653221000 0 0000000 012222222 245555555554432110 0000 12
Q ss_pred ccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcC-------CCCccEEEEeCCCCCCCCc-ccc
Q 036761 704 RCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFD-------FRSLKKIQIYGCHRLKDLT-FLL 775 (897)
Q Consensus 704 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~-------l~~L~~L~L~~c~~l~~l~-~l~ 775 (897)
.+|+.|++++|... .++...+..+++|+.|++++|.. ..++... ... +++|+.|+|++| .++.+| .+.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~-~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 508 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML-TEIPKNS-LKDENENFKNTYLLTSIDLRFN-KLTKLSDDFR 508 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC-SBCCSSS-SEETTEECTTGGGCCEEECCSS-CCCBCCGGGS
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC-CCcCHHH-hccccccccccCCccEEECcCC-cCCccChhhh
Confidence 35666666666532 33333344567777888777643 3433322 221 227888888887 455665 343
Q ss_pred --cCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccc------ccccccccCCCCCCCCcceeeecC
Q 036761 776 --FAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGG------LTVLKSIYKRPLPFPCLRDLTVNS 847 (897)
Q Consensus 776 --~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~l~~L~~L~i~~ 847 (897)
.+++|+.|+|++|.. +.++. .+..+++|+.|++++ +.....+|..+..+++|+.|++++
T Consensus 509 ~~~l~~L~~L~Ls~N~l-~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSF-SKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp TTTCTTCCEEECCSSCC-SSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred hccCCCcCEEECCCCCC-CCcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 678888888888643 33332 566788899998854 444566777777888999999988
Q ss_pred CccCCCCCCCCCcccccceEEEehh
Q 036761 848 CDELRKLPLDSNSAKERKIVIRGYR 872 (897)
Q Consensus 848 C~~L~~lp~~~~~~~~~~l~i~~c~ 872 (897)
|. ++.+|.... .+++.+++++|+
T Consensus 576 N~-l~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 576 ND-IRKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SC-CCBCCSCCC-TTCCEEECCSCT
T ss_pred Cc-CCccCHhHh-CcCCEEECcCCC
Confidence 75 588887655 456888888874
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=243.33 Aligned_cols=291 Identities=19% Similarity=0.191 Sum_probs=136.1
Q ss_pred cceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCccccChh-hhcCCcCcEec
Q 036761 543 HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLN 620 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 620 (897)
++++|+++ ++.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+|++|.++.+|.. +.++++|++|+
T Consensus 33 ~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLG-KNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECC-CCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 44444444 33444444434444455555555544 33332 34444445555555555444444432 34444555555
Q ss_pred CCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhch
Q 036761 621 LEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSK 700 (897)
Q Consensus 621 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 700 (897)
+++|.+ ..++...+..+++|++|+++++..... .+..+..+++|+.|++++|.+..++.. ..
T Consensus 111 Ls~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~--~l 172 (477)
T 2id5_A 111 ISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYI---------------SHRAFSGLNSLEQLTLEKCNLTSIPTE--AL 172 (477)
T ss_dssp CTTSCC-CEECTTTTTTCTTCCEEEECCTTCCEE---------------CTTSSTTCTTCCEEEEESCCCSSCCHH--HH
T ss_pred CCCCcc-ccCChhHccccccCCEEECCCCcccee---------------ChhhccCCCCCCEEECCCCcCcccChh--Hh
Confidence 554443 222222244444555555444432210 122344444455555554444332211 11
Q ss_pred hccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCC
Q 036761 701 ELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAP 778 (897)
Q Consensus 701 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~ 778 (897)
..+++|+.|++.++.. .......+..+++|+.|++++|..+..++.. .....+|++|+|++| .++.++ .+..++
T Consensus 173 ~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSITHC-NLTAVPYLAVRHLV 248 (477)
T ss_dssp TTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEESS-CCCSCCHHHHTTCT
T ss_pred cccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcc--cccCccccEEECcCC-cccccCHHHhcCcc
Confidence 1223444455544432 1122234555666666666666655544332 223346666666666 455555 355666
Q ss_pred CccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCC
Q 036761 779 NLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDS 858 (897)
Q Consensus 779 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~ 858 (897)
+|+.|+|++|. +..++. ..+..+++|+.|+++++..-...+..+..+++|+.|++++| +++.+|...
T Consensus 249 ~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 249 YLRFLNLSYNP-ISTIEG-----------SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV 315 (477)
T ss_dssp TCCEEECCSSC-CCEECT-----------TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG
T ss_pred ccCeeECCCCc-CCccCh-----------hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCceeCHhH
Confidence 66666666653 222221 13455666666666664332222344555666666666664 555555432
Q ss_pred C--cccccceEEEe
Q 036761 859 N--SAKERKIVIRG 870 (897)
Q Consensus 859 ~--~~~~~~l~i~~ 870 (897)
. ..+++.+++.+
T Consensus 316 ~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 316 FHSVGNLETLILDS 329 (477)
T ss_dssp BSCGGGCCEEECCS
T ss_pred cCCCcccCEEEccC
Confidence 1 12335555543
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=6.1e-24 Score=241.48 Aligned_cols=326 Identities=16% Similarity=0.200 Sum_probs=193.1
Q ss_pred EEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 504 VYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
...+..+...+.+..+.++++|++++|.+..++.+..+++|++|+++ ++.+..+++ +.++++|++|++++| .++.+
T Consensus 52 ~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~ 127 (466)
T 1o6v_A 52 QADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLFNN-QITDI 127 (466)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred ecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECCCC-CCCCC
Confidence 33444555566666777888888888888887777888888888888 666777765 778888888888888 67777
Q ss_pred CccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC-----
Q 036761 584 PLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK----- 658 (897)
Q Consensus 584 p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~----- 658 (897)
|. +.++++|++|++++|.++.+|. ++.+++|++|+++++ ...++. +.++++|++|++++|.........
T Consensus 128 ~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L 201 (466)
T 1o6v_A 128 DP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNL 201 (466)
T ss_dssp GG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTC
T ss_pred hH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCCCChhhccCCCC
Confidence 64 7888888888888887777653 555666555555422 233332 555556666665555432210000
Q ss_pred ----CCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCce
Q 036761 659 ----NDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRL 734 (897)
Q Consensus 659 ----~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 734 (897)
...+... ....++.+++|+.|++++|.+..++ ....+++|+.|++++|...... .+..+++|+.|
T Consensus 202 ~~L~l~~n~l~----~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L 270 (466)
T 1o6v_A 202 ESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLA---PLSGLTKLTEL 270 (466)
T ss_dssp SEEECCSSCCC----CCGGGGGCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEE
T ss_pred CEEEecCCccc----ccccccccCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccccch---hhhcCCCCCEE
Confidence 0000000 0011444555555555555554432 1222345566666555432211 14455666666
Q ss_pred eeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCccc
Q 036761 735 WIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFA 814 (897)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~ 814 (897)
++++|.. ..+++ ...+++|+.|++++| .++.++.+..+++|+.|++++|. +..++ .+..++
T Consensus 271 ~l~~n~l-~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~ 331 (466)
T 1o6v_A 271 KLGANQI-SNISP---LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS-------------PVSSLT 331 (466)
T ss_dssp ECCSSCC-CCCGG---GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG-------------GGGGCT
T ss_pred ECCCCcc-Ccccc---ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch-------------hhccCc
Confidence 6665532 22211 345666777777666 45555556666777777777653 22221 245778
Q ss_pred ccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCcccccceEEEehh
Q 036761 815 QLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYR 872 (897)
Q Consensus 815 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c~ 872 (897)
+|+.|++++| .+..++ ....+++|+.|++++|+ ++.++.......++.+++.+|+
T Consensus 332 ~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC-CCBCGGGTTCTTCCEEECCCEE
T ss_pred cCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc-cCccchhhcCCCCCEEeccCCc
Confidence 8888888886 455553 45678899999999875 4444333333445788888873
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.4e-24 Score=250.92 Aligned_cols=184 Identities=23% Similarity=0.283 Sum_probs=131.6
Q ss_pred cCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+.++...|.. -..++++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+
T Consensus 13 ~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN-HLSSL 89 (549)
T ss_dssp TTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CCCSC
T ss_pred CCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCC-ccCcc
Confidence 33445555542 2368999999999988774 46889999999999 66788888777899999999999999 66666
Q ss_pred Ccc-ccCccCCCEeeccCCCccc--cChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCC
Q 036761 584 PLG-ISVLVSLQHLDLSGTAIRE--LPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKND 660 (897)
Q Consensus 584 p~~-i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 660 (897)
|.. ++++++|++|++++|.++. .|..++++++|++|++++|.....+|...+.++++|++|+++++...........
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 654 8999999999999999884 4677899999999999999866778765588999999999988765432111000
Q ss_pred C--c----cc--cCccchhH-HhcCCCCCCEEEEEeCCccc
Q 036761 661 S--D----LF--SGGDLLVE-ALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 661 ~--~----~~--~~~~~~~~-~l~~l~~L~~L~l~~~~~~~ 692 (897)
. + .. ......+. .+..+++|+.|++++|.+..
T Consensus 170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 0 0 00 00011222 23457888888888877654
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=8.4e-24 Score=240.15 Aligned_cols=350 Identities=15% Similarity=0.103 Sum_probs=244.2
Q ss_pred EEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++...|. -..++++|++++|.+..++ .+..+++|++|+++++.....+++..|.++++|++|+|++| .+
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF 91 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-cc
Confidence 3444555666665 3368999999999998873 47899999999999544334777777999999999999999 55
Q ss_pred cc-cCccccCccCCCEeeccCCCccc-cChh--hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCC
Q 036761 581 SS-FPLGISVLVSLQHLDLSGTAIRE-LPKE--LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNG 656 (897)
Q Consensus 581 ~~-lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 656 (897)
+. .|..++++++|++|++++|.++. +|.. +..+++|++|++++|.+....|...+.++++|++|++++|.......
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 55 58889999999999999999985 4554 89999999999999987555566668999999999999987654321
Q ss_pred CCCC-------------CccccC------ccchhHHhcCCCCCCEEEEEeCCcccHH-HHHhchhccccceeEEEeccCC
Q 036761 657 KKND-------------SDLFSG------GDLLVEALRGLEHLEVLSLTLNNFQDLQ-CVLKSKELRRCTQALYLYSFKR 716 (897)
Q Consensus 657 ~~~~-------------~~~~~~------~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~ 716 (897)
.... .+.... .......+..+++|+.|++++|.+.... ...........++.|.++++..
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 251 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence 1100 000000 0000112335578889999888876432 2221221235788888887643
Q ss_pred Ccc---------ccccccc--ccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEE
Q 036761 717 SEP---------LDVSALA--GLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSI 783 (897)
Q Consensus 717 ~~~---------~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L 783 (897)
... .....+. ..++|+.|++++|.. ..+.+.. +..+++|+.|+|++| .+..++ .+..+++|++|
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSV-FSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred cccccchhhhccCcccccccccccCceEEEecCccc-cccchhh-cccCCCCCEEECCCC-cccccChhHhcCcccCCEE
Confidence 211 0011122 236899999998854 4443333 667899999999999 555443 57789999999
Q ss_pred EEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCC--cc
Q 036761 784 EVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSN--SA 861 (897)
Q Consensus 784 ~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~--~~ 861 (897)
++++|. +..++. ..+..+++|+.|++++|......+..+..+++|++|++++| +++.+|.... ..
T Consensus 329 ~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 395 (455)
T 3v47_A 329 NLSQNF-LGSIDS-----------RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLT 395 (455)
T ss_dssp ECCSSC-CCEECG-----------GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred ECCCCc-cCCcCh-----------hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCC
Confidence 999974 333322 25677899999999997544334667778999999999995 6888887542 23
Q ss_pred cccceEEEeh
Q 036761 862 KERKIVIRGY 871 (897)
Q Consensus 862 ~~~~l~i~~c 871 (897)
+++.++++++
T Consensus 396 ~L~~L~l~~N 405 (455)
T 3v47_A 396 SLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEEccCC
Confidence 4588888865
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6.3e-24 Score=235.69 Aligned_cols=301 Identities=15% Similarity=0.143 Sum_probs=239.1
Q ss_pred ccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCC
Q 036761 518 EWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQ 594 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~ 594 (897)
.+.+++++++.++.+..+|. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++.+ |..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 45789999999999999886 5789999999999 67788888877999999999999999 66665 45689999999
Q ss_pred EeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH
Q 036761 595 HLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
+|++++|.++.+|.. +.++++|++|++++|.+ ..++...+..+++|++|+++++..... .
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~ 181 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV------------------D 181 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBC------------------C
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCcc------------------c
Confidence 999999999999987 58999999999999985 566655689999999999999875421 2
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcC
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFD 753 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 753 (897)
+..+++|+.|++++|.+..+ .....|+.|+++++... ..+ ...+++|+.|++++|.. ... .+ ...
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~-~~~---~~~~~~L~~L~l~~n~l-~~~--~~-l~~ 246 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSIN-VVR---GPVNVELTILKLQHNNL-TDT--AW-LLN 246 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCC-EEE---CCCCSSCCEEECCSSCC-CCC--GG-GGG
T ss_pred cccccccceeeccccccccc-------CCCCcceEEECCCCeee-ecc---ccccccccEEECCCCCC-ccc--HH-HcC
Confidence 56688999999999987653 23457999999988642 222 12357899999998854 322 22 567
Q ss_pred CCCccEEEEeCCCCCCCC--cccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccccccc
Q 036761 754 FRSLKKIQIYGCHRLKDL--TFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIY 831 (897)
Q Consensus 754 l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 831 (897)
+++|++|+|++| .++.+ ..+..+++|++|++++|. ++.++. ....+|+|+.|++++| .+..++
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp CTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCTTCCEEECCSS-CCCCCG
T ss_pred CCCccEEECCCC-cCCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCCCCCEEECCCC-cceecC
Confidence 899999999999 55554 257789999999999964 444322 5567899999999996 677787
Q ss_pred CCCCCCCCcceeeecCCccCCCCCCCCCcccccceEEEeh
Q 036761 832 KRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGY 871 (897)
Q Consensus 832 ~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c 871 (897)
.....+++|+.|++++|+ ++.+|... ...++.++++++
T Consensus 312 ~~~~~l~~L~~L~L~~N~-i~~~~~~~-~~~L~~L~l~~N 349 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNS-IVTLKLST-HHTLKNLTLSHN 349 (390)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCCCCCT-TCCCSEEECCSS
T ss_pred ccccccCcCCEEECCCCc-cceeCchh-hccCCEEEcCCC
Confidence 777789999999999975 88888543 345688998875
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=5.6e-24 Score=236.07 Aligned_cols=296 Identities=19% Similarity=0.234 Sum_probs=235.3
Q ss_pred cEEEEcCCCccCCCc--ccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccC
Q 036761 501 NYLVYTGAGLTKPPN--VREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSG 576 (897)
Q Consensus 501 ~~~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~ 576 (897)
..+...+..+...+. +..+++++.|++.+|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCEEECCC
Confidence 344445555555544 456789999999999998875 46899999999999 7778899888899999999999999
Q ss_pred CCCCcccCcc-ccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCC
Q 036761 577 ARRMSSFPLG-ISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSP 654 (897)
Q Consensus 577 ~~~~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 654 (897)
| .++.+|.. ++++++|++|++++|.++.++. .+..+++|++|++++|.+ ..++ +..+++|++|+++++...
T Consensus 127 n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~---~~~l~~L~~L~l~~n~l~-- 199 (390)
T 3o6n_A 127 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFHANVSYNLLS-- 199 (390)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC-SBCC---GGGCTTCSEEECCSSCCS--
T ss_pred C-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC-Cccc---cccccccceeeccccccc--
Confidence 9 88888876 5899999999999999998855 589999999999999985 5565 678899999999987533
Q ss_pred CCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCce
Q 036761 655 NGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRL 734 (897)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 734 (897)
.+...++|+.|++++|.+..++. ....+|+.|++++|.... . ..+..+++|++|
T Consensus 200 ------------------~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L 253 (390)
T 3o6n_A 200 ------------------TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD-T--AWLLNYPGLVEV 253 (390)
T ss_dssp ------------------EEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSCCCC-C--GGGGGCTTCSEE
T ss_pred ------------------ccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCCCcc-c--HHHcCCCCccEE
Confidence 23455789999999998876532 234689999999987433 2 367889999999
Q ss_pred eeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcc-cccCCCccEEEEecCchhhhhhcccccCCccccccCCCcc
Q 036761 735 WIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTF-LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPF 813 (897)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 813 (897)
++++|. ++.+.+.. +..+++|+.|+|++| .++.++. ...+++|+.|++++|. +..++. .+..+
T Consensus 254 ~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l 317 (390)
T 3o6n_A 254 DLSYNE-LEKIMYHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER------------NQPQF 317 (390)
T ss_dssp ECCSSC-CCEEESGG-GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG------------GHHHH
T ss_pred ECCCCc-CCCcChhH-ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCc------------ccccc
Confidence 999885 45444443 567999999999999 6666653 4578999999999974 444433 45678
Q ss_pred cccceeecccccccccccCCCCCCCCcceeeecCCc
Q 036761 814 AQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 814 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~ 849 (897)
++|+.|++++|+ ++.++ ...+++|+.|+++++|
T Consensus 318 ~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 318 DRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp TTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 999999999965 55554 5678999999999865
No 15
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=239.24 Aligned_cols=309 Identities=20% Similarity=0.214 Sum_probs=237.2
Q ss_pred EEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++..+|.. -..+++.|++++|.+..++ .+..+++|++|+|+ ++.+..+++..|.++++|++|+|++| .+
T Consensus 16 v~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l 92 (477)
T 2id5_A 16 VLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN-RL 92 (477)
T ss_dssp EECCSCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred EEeCCCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECCCC-cC
Confidence 33344455555532 2358999999999999875 47899999999999 67788887777999999999999999 78
Q ss_pred cccCcc-ccCccCCCEeeccCCCcccc-ChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC
Q 036761 581 SSFPLG-ISVLVSLQHLDLSGTAIREL-PKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK 658 (897)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
+.+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++|.+ ..++...+..+++|++|++++|.....
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 167 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSI---- 167 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC-CEECTTSSTTCTTCCEEEEESCCCSSC----
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcc-ceeChhhccCCCCCCEEECCCCcCccc----
Confidence 888754 78999999999999999976 55789999999999999985 555555589999999999999875432
Q ss_pred CCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeee
Q 036761 659 NDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHE 738 (897)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~ 738 (897)
....+..+++|+.|+++.|.+..+.. .....+++|+.|++++|.....++...+ ...+|++|++++
T Consensus 168 -----------~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~ 233 (477)
T 2id5_A 168 -----------PTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITH 233 (477)
T ss_dssp -----------CHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEES
T ss_pred -----------ChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccc-cCccccEEECcC
Confidence 45678899999999999998876432 1233456899999999876665553333 345899999998
Q ss_pred cCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCccccc
Q 036761 739 CEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQL 816 (897)
Q Consensus 739 ~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L 816 (897)
|. ++.++.. .+..+++|+.|+|++| .++.++ .+..+++|+.|+|++|. +..+.. ..+..+++|
T Consensus 234 n~-l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L 298 (477)
T 2id5_A 234 CN-LTAVPYL-AVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-----------YAFRGLNYL 298 (477)
T ss_dssp SC-CCSCCHH-HHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSC-CSEECT-----------TTBTTCTTC
T ss_pred Cc-ccccCHH-HhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCc-cceECH-----------HHhcCcccC
Confidence 84 4444322 2457899999999998 455554 36788999999999864 333322 256788999
Q ss_pred ceeecccccccccccCC-CCCCCCcceeeecCCc
Q 036761 817 YSLRLGGLTVLKSIYKR-PLPFPCLRDLTVNSCD 849 (897)
Q Consensus 817 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~i~~C~ 849 (897)
+.|+|+++ .++.++.. +..+++|+.|++.++|
T Consensus 299 ~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 99999985 56666553 4568899999998865
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.1e-23 Score=244.54 Aligned_cols=146 Identities=22% Similarity=0.229 Sum_probs=113.2
Q ss_pred EEEcCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++..+|.. -..++++|++++|.+..++. +.++++|++|+++ ++.+..+++..|.++++|++|+|++| .+
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l 92 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN-PI 92 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCC-cc
Confidence 33445555555542 23678899999988888764 6788899999998 66788887777888999999999988 56
Q ss_pred ccc-CccccCccCCCEeeccCCCccccC-hhhhcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccCCC
Q 036761 581 SSF-PLGISVLVSLQHLDLSGTAIRELP-KELNALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVGDW 652 (897)
Q Consensus 581 ~~l-p~~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~ 652 (897)
+.+ |..++++++|++|++++|.++.+| ..++++++|++|++++|.+.. .+|.. ++++++|++|++++|...
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 655 778888999999999999888776 568888899999998887543 46765 888888888888887654
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-23 Score=237.31 Aligned_cols=311 Identities=18% Similarity=0.186 Sum_probs=205.7
Q ss_pred ccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEee
Q 036761 518 EWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLD 597 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 597 (897)
.+.+++.|++.++.+..++.+..+++|++|+++ ++.+..+++ +.++++|++|++++| .+..++. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 456899999999999999999999999999999 677888886 899999999999999 7787776 99999999999
Q ss_pred ccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCC-CC--------CCCccccCcc
Q 036761 598 LSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNG-KK--------NDSDLFSGGD 668 (897)
Q Consensus 598 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~-~~--------~~~~~~~~~~ 668 (897)
+++|.++.+|. +.++++|++|++++|.+ ..+|. +..+++|++|++.++ ...... .. ...+.+.
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~--~~~l~~L~~L~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~--- 190 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNTI-SDISA--LSGLTSLQQLSFGNQ-VTDLKPLANLTTLERLDISSNKVS--- 190 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEEE-CCCGG--GTTCTTCSEEEEEES-CCCCGGGTTCTTCCEEECCSSCCC---
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCcc-CCChh--hccCCcccEeecCCc-ccCchhhccCCCCCEEECcCCcCC---
Confidence 99999999976 99999999999999984 66764 899999999999642 211100 00 0000000
Q ss_pred chhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEec
Q 036761 669 LLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMA 748 (897)
Q Consensus 669 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 748 (897)
....+..+++|+.|++++|.+..... ...+++|+.|++++|... .+ ..+..+++|+.|++++|.. ..+++
T Consensus 191 -~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~-~~--~~l~~l~~L~~L~l~~n~l-~~~~~- 260 (466)
T 1o6v_A 191 -DISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLK-DI--GTLASLTNLTDLDLANNQI-SNLAP- 260 (466)
T ss_dssp -CCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCC-CC--GGGGGCTTCSEEECCSSCC-CCCGG-
T ss_pred -CChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCcc-cc--hhhhcCCCCCEEECCCCcc-ccchh-
Confidence 11223444444444444444433221 122334555555554321 11 2344555666666655532 21111
Q ss_pred ccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccc
Q 036761 749 RQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLK 828 (897)
Q Consensus 749 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 828 (897)
...+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++ .+..+++|+.|++++|. +.
T Consensus 261 --~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~-l~ 322 (466)
T 1o6v_A 261 --LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDIS-------------PISNLKNLTYLTLYFNN-IS 322 (466)
T ss_dssp --GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCG-------------GGGGCTTCSEEECCSSC-CS
T ss_pred --hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCch-------------hhcCCCCCCEEECcCCc-CC
Confidence 334566666666666 45555555566666666666653 22221 25678888999998874 44
Q ss_pred cccCCCCCCCCcceeeecCCccCCCCCCCCCcccccceEEEeh
Q 036761 829 SIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGY 871 (897)
Q Consensus 829 ~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c 871 (897)
.++. ...+++|+.|++++| +++.+|.-.....++.+++.+|
T Consensus 323 ~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 323 DISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp CCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred Cchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCC
Confidence 4332 567889999999887 6777764334445588888877
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.5e-24 Score=257.55 Aligned_cols=321 Identities=19% Similarity=0.187 Sum_probs=151.0
Q ss_pred cccccceEeecccccccc-cccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCE
Q 036761 517 REWENARRFSLMETQIRT-LSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQH 595 (897)
Q Consensus 517 ~~~~~lr~L~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 595 (897)
..+.++++|++++|.+.. +|.+..+++|++|+++ ++.+....+..|..+++|++|+|++|.....+|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS-GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECC-SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECc-CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 445566777777666654 3445666677777776 44444333344666666666666666322233322 4555555
Q ss_pred eeccCCCcc-ccChhhhcC-CcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchh-H
Q 036761 596 LDLSGTAIR-ELPKELNAL-ENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLV-E 672 (897)
Q Consensus 596 L~L~~~~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 672 (897)
|++++|.++ .+|..+..+ ++|++|++++|.+...+|.. ++++++|++|++++|.... ..+ .
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~---------------~ip~~ 337 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSG---------------ELPMD 337 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEE---------------ECCHH
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccC---------------cCCHH
Confidence 555555554 445444433 55555555555543344443 4555555555555443210 011 1
Q ss_pred HhcCCCCCCEEEEEeCCccc-HHHHHh----------------------ch--hccccceeEEEeccCCCcccccccccc
Q 036761 673 ALRGLEHLEVLSLTLNNFQD-LQCVLK----------------------SK--ELRRCTQALYLYSFKRSEPLDVSALAG 727 (897)
Q Consensus 673 ~l~~l~~L~~L~l~~~~~~~-~~~~~~----------------------~~--~~~~~L~~L~L~~~~~~~~~~~~~l~~ 727 (897)
.+..+++|+.|+++.|.+.. ++..+. .. ...++|+.|++++|......+ ..+..
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~ 416 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSN 416 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGG
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-HHHhc
Confidence 23444444444444443321 110000 00 002245555555443221211 23455
Q ss_pred cCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCcccc
Q 036761 728 LKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEV 806 (897)
Q Consensus 728 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~ 806 (897)
+++|+.|++++|.....+ +.. +..+++|+.|++++|.....+| .+..+++|++|++++|.....++
T Consensus 417 l~~L~~L~Ls~N~l~~~~-p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----------- 483 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTI-PSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP----------- 483 (768)
T ss_dssp CTTCCEEECCSSEEESCC-CGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-----------
T ss_pred CCCCCEEECcCCcccCcc-cHH-HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC-----------
Confidence 556666666555322211 111 3445556666666553222333 34455666666666553322222
Q ss_pred ccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCccc-ccceEEEeh
Q 036761 807 MANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAK-ERKIVIRGY 871 (897)
Q Consensus 807 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~-~~~l~i~~c 871 (897)
..+..+++|+.|++++|.....+|..+..+++|+.|++++|.-...+|......+ ++.+++++|
T Consensus 484 -~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 484 -SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp -GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred -HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 1344555666666666554445555555556666666666544334554333222 255555544
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.2e-24 Score=249.99 Aligned_cols=350 Identities=15% Similarity=0.113 Sum_probs=206.5
Q ss_pred cccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCcc
Q 036761 515 NVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLV 591 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~ 591 (897)
.+..+.++++|++++|.+..++ .+.++++|++|+++ ++.+..+++..|+++++|++|+|++| .++.+| ..+++++
T Consensus 51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLI 128 (606)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCT
T ss_pred hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccCC-ccccccccccCCCC
Confidence 3556788999999999888874 36788999999999 66688886666889999999999999 666655 6788999
Q ss_pred CCCEeeccCCCcc--ccChhhhcCCcCcEecCCCCccccccChhhhhcCC---------------------------ccc
Q 036761 592 SLQHLDLSGTAIR--ELPKELNALENLQCLNLEETHFLITIPRQLISSFS---------------------------SLI 642 (897)
Q Consensus 592 ~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~---------------------------~L~ 642 (897)
+|++|++++|.++ .+|..++++++|++|++++|.+ ..++...++.++ +|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI-QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC-CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc-eecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 9999999999887 4788899999999999998875 333332233333 233
Q ss_pred eeeccccCCC----------------------------------------------------------------------
Q 036761 643 VLRMFGVGDW---------------------------------------------------------------------- 652 (897)
Q Consensus 643 ~L~l~~~~~~---------------------------------------------------------------------- 652 (897)
+|+++++...
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence 3333332210
Q ss_pred -----------CCCCCCC---------CCcccc----------------Cc-cchhHHhcCCCCCCEEEEEeCCcccHHH
Q 036761 653 -----------SPNGKKN---------DSDLFS----------------GG-DLLVEALRGLEHLEVLSLTLNNFQDLQC 695 (897)
Q Consensus 653 -----------~~~~~~~---------~~~~~~----------------~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 695 (897)
.+..... ..+.+. .. ......+..+++|+.|++++|.+.....
T Consensus 288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 367 (606)
T 3vq2_A 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGC 367 (606)
T ss_dssp SEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEE
T ss_pred CEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcc
Confidence 0000000 000000 00 0000123345566666666666554311
Q ss_pred HHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-cc
Q 036761 696 VLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FL 774 (897)
Q Consensus 696 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l 774 (897)
.......+++|+.|++++|.. ...+ ..+..+++|+.|++++|.... ..+...+..+++|+.|++++|......+ .+
T Consensus 368 ~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 444 (606)
T 3vq2_A 368 CSYSDLGTNSLRHLDLSFNGA-IIMS-ANFMGLEELQHLDFQHSTLKR-VTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444 (606)
T ss_dssp CCHHHHCCSCCCEEECCSCSE-EEEC-CCCTTCTTCCEEECTTSEEES-TTTTTTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred hhhhhccCCcccEeECCCCcc-ccch-hhccCCCCCCeeECCCCccCC-ccChhhhhccccCCEEECcCCCCCccchhhh
Confidence 111223345677777776652 2222 345556666666666553222 1111123455566666666653222222 34
Q ss_pred ccCCCccEEEEecCchhhhhhcccc--c----------CCccc-cccCCCcccccceeecccccccccccCCCCCCCCcc
Q 036761 775 LFAPNLKSIEVSSCFAMEEIISEAK--F----------ADVPE-VMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLR 841 (897)
Q Consensus 775 ~~l~~L~~L~L~~c~~l~~i~~~~~--~----------~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 841 (897)
..+++|++|++++|.....+++... . ..+.. .+..+..+++|+.|++++|......+..+..+++|+
T Consensus 445 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 4555555555555433221111000 0 00111 123567889999999999765555577778899999
Q ss_pred eeeecCCccCCCCCCCCCcc--cccceEEEeh
Q 036761 842 DLTVNSCDELRKLPLDSNSA--KERKIVIRGY 871 (897)
Q Consensus 842 ~L~i~~C~~L~~lp~~~~~~--~~~~l~i~~c 871 (897)
.|++++|. ++.+|...... +++.+++.++
T Consensus 525 ~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 525 TLDCSFNR-IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred EEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence 99999974 88999875443 3588888764
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.5e-23 Score=243.75 Aligned_cols=301 Identities=15% Similarity=0.144 Sum_probs=237.4
Q ss_pred ccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCC
Q 036761 518 EWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQ 594 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~ 594 (897)
.+.+++.+++.++.+..+|. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++.+| ..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 35688999999999998886 5789999999999 67788888877999999999999999 666655 4579999999
Q ss_pred EeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH
Q 036761 595 HLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
+|+|++|.++.+|.. ++++++|++|++++|.+ ..+++..++++++|++|++++|..... .
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~------------------~ 187 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV------------------D 187 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECTTSCCSBC------------------C
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-CCCChhhhhcCCcCcEEECcCCCCCCc------------------C
Confidence 999999999999887 58999999999999985 556555589999999999999875421 2
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcC
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFD 753 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 753 (897)
+..+++|+.|++++|.+..+ .....|+.|++++|... .++. ...++|+.|++++|.... +.+ ...
T Consensus 188 ~~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~-~~~~---~~~~~L~~L~L~~n~l~~---~~~-l~~ 252 (597)
T 3oja_B 188 LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSIN-VVRG---PVNVELTILKLQHNNLTD---TAW-LLN 252 (597)
T ss_dssp GGGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCC-EEEC---SCCSCCCEEECCSSCCCC---CGG-GGG
T ss_pred hhhhhhhhhhhcccCccccc-------cCCchhheeeccCCccc-cccc---ccCCCCCEEECCCCCCCC---Chh-hcc
Confidence 56688999999999987653 23457999999988632 2221 123689999999885433 233 567
Q ss_pred CCCccEEEEeCCCCCCCC-c-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccccccc
Q 036761 754 FRSLKKIQIYGCHRLKDL-T-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIY 831 (897)
Q Consensus 754 l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 831 (897)
+++|+.|+|++| .+..+ | .++.+++|+.|+|++|. +..++. ....+|+|+.|+|++| .+..+|
T Consensus 253 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 253 YPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp CTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEEECCSS-CCCCCG
T ss_pred CCCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCC-CCCCCc------------ccccCCCCcEEECCCC-CCCccC
Confidence 999999999999 45544 3 57789999999999964 443332 5677999999999996 566788
Q ss_pred CCCCCCCCcceeeecCCccCCCCCCCCCcccccceEEEeh
Q 036761 832 KRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGY 871 (897)
Q Consensus 832 ~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~~~l~i~~c 871 (897)
..+..+++|+.|++++|+ ++.+|.... ..++.++++++
T Consensus 318 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~L~~L~l~~N 355 (597)
T 3oja_B 318 RNQPQFDRLENLYLDHNS-IVTLKLSTH-HTLKNLTLSHN 355 (597)
T ss_dssp GGHHHHTTCSEEECCSSC-CCCCCCCTT-CCCSEEECCSS
T ss_pred cccccCCCCCEEECCCCC-CCCcChhhc-CCCCEEEeeCC
Confidence 777789999999999974 788875543 45688888875
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.4e-23 Score=236.30 Aligned_cols=267 Identities=14% Similarity=0.136 Sum_probs=176.3
Q ss_pred cccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 515 NVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
.+..+.++++|++++|.+..+|.+..+++|++|+++ ++.++.+| ++.+++|++|++++| .++.+| ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICT-SNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECC-SSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEcc-CCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 344567888888888888888878888888888888 66677775 678888888888888 677765 78888888
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHh
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEAL 674 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (897)
+|++++|.++.+| ++.+++|++|++++|.+ ..++ ++.+++|++|++++|..... . .+
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~---l~~l~~L~~L~l~~n~~~~~---------------~--~~ 166 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID---VSHNTQLTELDCHLNKKITK---------------L--DV 166 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC---CTTCTTCCEEECTTCSCCCC---------------C--CC
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec---cccCCcCCEEECCCCCcccc---------------c--cc
Confidence 8888888888876 78888888888888874 5554 67888888888888743221 1 35
Q ss_pred cCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCC
Q 036761 675 RGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDF 754 (897)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l 754 (897)
..+++|+.|++++|.+..++ ...++.|+.|++++|.... + .+..+++|+.|++++|. ++.++ ...+
T Consensus 167 ~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~-l~~ip----~~~l 232 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNK-LTEID----VTPL 232 (457)
T ss_dssp TTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSC-CSCCC----CTTC
T ss_pred ccCCcCCEEECCCCccceec-----cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCc-ccccC----cccc
Confidence 56777778888777776643 2334567777777765322 2 35566777777777764 33332 3456
Q ss_pred CCccEEEEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccccccc
Q 036761 755 RSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIY 831 (897)
Q Consensus 755 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 831 (897)
++|+.|++++| .++.++ ++.+++|+.|+++++ .++.+.-.. ....... ....+++|+.|++++|+.++.++
T Consensus 233 ~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 233 TQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTH-NTQLIYF--QAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp TTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTT-CTTCCEE--ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred CCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCC-CccCCcc--cccccccCCEEECCCCcccceec
Confidence 77777777777 455544 445555555555442 222221100 0000011 13455677777777766655554
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.4e-23 Score=243.96 Aligned_cols=296 Identities=19% Similarity=0.235 Sum_probs=233.2
Q ss_pred cEEEEcCCCccCCCc--ccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccC
Q 036761 501 NYLVYTGAGLTKPPN--VREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSG 576 (897)
Q Consensus 501 ~~~~~~~~~~~~~~~--~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~ 576 (897)
..+...+..+...+. +..+.+++.|++++|.+..++ .+..+++|++|+|+ ++.+..+++..|+++++|++|+|++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~ 132 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTVLVLER 132 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECC-CCcCCCCCHHHHcCCCCCCEEEeeC
Confidence 444445544444443 345789999999999998886 57899999999999 7779999988899999999999999
Q ss_pred CCCCcccCcc-ccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCC
Q 036761 577 ARRMSSFPLG-ISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSP 654 (897)
Q Consensus 577 ~~~~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~ 654 (897)
| .++.+|.. ++++++|++|+|++|.++.+|. .++.+++|++|++++|.+ ..++ ++.+++|++|+++++...
T Consensus 133 n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~---~~~l~~L~~L~l~~n~l~-- 205 (597)
T 3oja_B 133 N-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFHANVSYNLLS-- 205 (597)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC---GGGCTTCSEEECCSSCCS--
T ss_pred C-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC---hhhhhhhhhhhcccCccc--
Confidence 9 78888876 5899999999999999998765 699999999999999985 5665 567899999999987532
Q ss_pred CCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCce
Q 036761 655 NGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRL 734 (897)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 734 (897)
.+...++|+.|++++|.+..++. ....+|+.|++++|..... ..+..+++|+.|
T Consensus 206 ------------------~l~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L 259 (597)
T 3oja_B 206 ------------------TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTDT---AWLLNYPGLVEV 259 (597)
T ss_dssp ------------------EEECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCCC---GGGGGCTTCSEE
T ss_pred ------------------cccCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCCC---hhhccCCCCCEE
Confidence 23456789999999998866532 2235899999999875432 467788999999
Q ss_pred eeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcc-cccCCCccEEEEecCchhhhhhcccccCCccccccCCCcc
Q 036761 735 WIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTF-LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPF 813 (897)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~ 813 (897)
++++|. +..+.+.. +..+++|+.|+|++| .++.+|. ...+|+|+.|+|++|. +..++. .+..+
T Consensus 260 ~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~------------~~~~l 323 (597)
T 3oja_B 260 DLSYNE-LEKIMYHP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER------------NQPQF 323 (597)
T ss_dssp ECCSSC-CCEEESGG-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG------------GHHHH
T ss_pred ECCCCc-cCCCCHHH-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc------------ccccC
Confidence 999885 44444443 567899999999998 6666663 4568999999999974 334433 45678
Q ss_pred cccceeecccccccccccCCCCCCCCcceeeecCCc
Q 036761 814 AQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 814 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~ 849 (897)
++|+.|++++|+ +..++ ...+++|+.|++++||
T Consensus 324 ~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 999999999965 55554 5678999999999876
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=239.11 Aligned_cols=353 Identities=15% Similarity=0.145 Sum_probs=217.0
Q ss_pred EEEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
.+...+..+...|... ..++++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++| .
T Consensus 4 ~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp EEECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred eEecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC-c
Confidence 3444455555555422 278999999999998875 47889999999999 77788887777999999999999999 8
Q ss_pred CcccCccccCccCCCEeeccCCCccc--cChhhhcCCcCcEecCCCCccccccChhhhhcCCcc--ceeeccccCC--CC
Q 036761 580 MSSFPLGISVLVSLQHLDLSGTAIRE--LPKELNALENLQCLNLEETHFLITIPRQLISSFSSL--IVLRMFGVGD--WS 653 (897)
Q Consensus 580 ~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~--~~ 653 (897)
++.+|.. .+++|++|++++|.++. +|..++++++|++|++++|.+. . ..+..+++| ++|++++|.. ..
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h---hhccccccceeeEEEeecccccccc
Confidence 8889877 89999999999999986 5789999999999999999853 3 226778888 9999988765 11
Q ss_pred CCCCCCCC------------cc--------------------ccCc---------cchhHHhc-----------------
Q 036761 654 PNGKKNDS------------DL--------------------FSGG---------DLLVEALR----------------- 675 (897)
Q Consensus 654 ~~~~~~~~------------~~--------------------~~~~---------~~~~~~l~----------------- 675 (897)
........ +. .... ...+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 11000000 00 0000 00000111
Q ss_pred ----------CCCCCCEEEEEeCCcc-cHHHHHhc--hhccc--------------------------cceeEEEeccCC
Q 036761 676 ----------GLEHLEVLSLTLNNFQ-DLQCVLKS--KELRR--------------------------CTQALYLYSFKR 716 (897)
Q Consensus 676 ----------~l~~L~~L~l~~~~~~-~~~~~~~~--~~~~~--------------------------~L~~L~L~~~~~ 716 (897)
.+++|+.|++++|.+. .++..... ...++ +++.|+++++..
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcc
Confidence 1236777777776654 22211100 01112 244444444431
Q ss_pred CcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc----ccccCCCccEEEEecCchhh
Q 036761 717 SEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT----FLLFAPNLKSIEVSSCFAME 792 (897)
Q Consensus 717 ~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~ 792 (897)
.. .. ....+++|++|++++|.....+ +.+ ...+++|+.|++++| .++.++ .+..+++|++|++++|....
T Consensus 315 ~~-~~--~~~~l~~L~~L~Ls~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 315 VH-ML--CPSKISPFLHLDFSNNLLTDTV-FEN-CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CC-CC--CCSSCCCCCEEECCSSCCCTTT-TTT-CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred cc-cc--chhhCCcccEEEeECCccChhh-hhh-hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 11 10 1145666777777766433211 222 345666777777766 444332 24566677777776654332
Q ss_pred hhhcccc--cCCccccc--------cCCCcc-cccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCC-CCc
Q 036761 793 EIISEAK--FADVPEVM--------ANLKPF-AQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLD-SNS 860 (897)
Q Consensus 793 ~i~~~~~--~~~~~~~~--------~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~-~~~ 860 (897)
.++.... ...+..+. .....+ ++|+.|++++| .++.+|.....+++|+.|++++| +++.+|.. ...
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~ 466 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDR 466 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhcc
Confidence 2332100 00000000 001122 68999999886 56688877778999999999997 78899976 332
Q ss_pred -ccccceEEEeh
Q 036761 861 -AKERKIVIRGY 871 (897)
Q Consensus 861 -~~~~~l~i~~c 871 (897)
..++.+++.++
T Consensus 467 l~~L~~L~l~~N 478 (520)
T 2z7x_B 467 LTSLQKIWLHTN 478 (520)
T ss_dssp CTTCCEEECCSS
T ss_pred CCcccEEECcCC
Confidence 34488888765
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6e-23 Score=240.38 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=79.6
Q ss_pred ccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEe
Q 036761 520 ENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHL 596 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L 596 (897)
.++++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+| ..++++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccc
Confidence 45667777777666654 35666677777776 44566666655666777777777766 444443 456666666666
Q ss_pred eccCCCccccCh-hhhcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccC
Q 036761 597 DLSGTAIRELPK-ELNALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 597 ~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
++++|.++.+|. .++++++|++|++++|.+.. .+|.. ++++++|++|+++++.
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCc
Confidence 666666666654 46666666666666665422 24544 6666666666666554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.7e-23 Score=234.80 Aligned_cols=316 Identities=14% Similarity=0.101 Sum_probs=217.5
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 601 (897)
+.+...++.+..+|.+ .++|++|+++ ++.+..+++..|.++++|++|+|++|.....+ |..+.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLS-LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECC-SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCCC--CCccCEEEec-CCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4566777788888873 3889999999 77788887777999999999999999443355 567999999999999999
Q ss_pred Ccccc-ChhhhcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH-hcCCC
Q 036761 602 AIREL-PKELNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA-LRGLE 678 (897)
Q Consensus 602 ~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~ 678 (897)
.++.+ |..++++++|++|++++|.+...+|. ..+.++++|++|++++|..... .+.. +.+++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~~l~ 154 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI---------------QPASFFLNMR 154 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC---------------CCCGGGGGCT
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc---------------CcccccCCCC
Confidence 99976 77899999999999999986443332 3478999999999999876532 2333 77889
Q ss_pred CCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccc-------ccccccCCCCceeeeecCCc---------
Q 036761 679 HLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDV-------SALAGLKHLNRLWIHECEEL--------- 742 (897)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~l--------- 742 (897)
+|+.|++++|.+..........-....++.|+++++........ ..+..+++|++|++++|...
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 99999999988765422110000113455555555542111100 01123345555555554211
Q ss_pred -------cEEEecc-------------------c--CcCCCCccEEEEeCCCCCCC-Cc-ccccCCCccEEEEecCchhh
Q 036761 743 -------EELEMAR-------------------Q--PFDFRSLKKIQIYGCHRLKD-LT-FLLFAPNLKSIEVSSCFAME 792 (897)
Q Consensus 743 -------~~l~~~~-------------------~--~~~l~~L~~L~L~~c~~l~~-l~-~l~~l~~L~~L~L~~c~~l~ 792 (897)
+.+.... . ....++|+.|++++|. +.. ++ .+..+++|++|++++|. +.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~ 312 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE-IN 312 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CC
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCc-cc
Confidence 1111000 0 0123689999999994 443 33 57789999999999975 33
Q ss_pred hhhcccccCCccccccCCCcccccceeecccccccccc-cCCCCCCCCcceeeecCCccCCCC-CCCCCc-ccccceEEE
Q 036761 793 EIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSI-YKRPLPFPCLRDLTVNSCDELRKL-PLDSNS-AKERKIVIR 869 (897)
Q Consensus 793 ~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~i~~C~~L~~l-p~~~~~-~~~~~l~i~ 869 (897)
.++. ..+..+++|+.|++++|. ++.+ +..+..+++|++|++++| +++.+ |..... ..++.++++
T Consensus 313 ~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 313 KIDD-----------NAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp EECT-----------TTTTTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred ccCh-----------hHhcCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECC
Confidence 3322 267789999999999974 4554 456678999999999997 46665 544433 345889998
Q ss_pred eh
Q 036761 870 GY 871 (897)
Q Consensus 870 ~c 871 (897)
++
T Consensus 380 ~N 381 (455)
T 3v47_A 380 TN 381 (455)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.1e-23 Score=245.78 Aligned_cols=305 Identities=14% Similarity=0.136 Sum_probs=167.9
Q ss_pred ccCCccceeeehhccccccc------------------cchhhhc--CCCcccEEEccCCCCCcccCccccCccCCCEee
Q 036761 538 VPTCLHLLTLFLIFNEELEM------------------ITSDFFK--SMPRLKVLNLSGARRMSSFPLGISVLVSLQHLD 597 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~------------------l~~~~~~--~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 597 (897)
+.++++|++|+++ ++.+.. +|.. ++ ++++|++|+|++|...+.+|..++++++|++|+
T Consensus 202 l~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECc-CCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 5678888888888 555666 7765 56 888888888888866677888888888888888
Q ss_pred ccCCC-cc--ccChhhhcC------CcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCc
Q 036761 598 LSGTA-IR--ELPKELNAL------ENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGG 667 (897)
Q Consensus 598 L~~~~-i~--~lp~~i~~L------~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 667 (897)
+++|+ ++ .+|..++++ ++|++|++++|.+ ..+|. +.++++++|++|++++|....
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-~~ip~~~~l~~l~~L~~L~L~~N~l~g-------------- 344 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLECLYNQLEG-------------- 344 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-SSCCCHHHHTTCTTCCEEECCSCCCEE--------------
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-CccCchhhhccCCCCCEEeCcCCcCcc--------------
Confidence 88887 77 488887776 8888888888875 47876 138888888888888876541
Q ss_pred cchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhcccc-ceeEEEeccCCCcccccccccc--cCCCCceeeeecCCccE
Q 036761 668 DLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRC-TQALYLYSFKRSEPLDVSALAG--LKHLNRLWIHECEELEE 744 (897)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~l~~ 744 (897)
..+ .+..+++|+.|++++|.+..++.. ....+. |+.|++++|... .++. .+.. +++|+.|++++|.....
T Consensus 345 -~ip-~~~~l~~L~~L~L~~N~l~~lp~~---l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 345 -KLP-AFGSEIKLASLNLAYNQITEIPAN---FCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp -ECC-CCEEEEEESEEECCSSEEEECCTT---SEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTT
T ss_pred -chh-hhCCCCCCCEEECCCCccccccHh---hhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCc
Confidence 022 344444444444444444422211 111223 444444444322 2211 1111 22444444444422211
Q ss_pred EEecccCc-------CCCCccEEEEeCCCCCCCCcc--cccCCCccEEEEecCchhhhhhccccc---------------
Q 036761 745 LEMARQPF-------DFRSLKKIQIYGCHRLKDLTF--LLFAPNLKSIEVSSCFAMEEIISEAKF--------------- 800 (897)
Q Consensus 745 l~~~~~~~-------~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~--------------- 800 (897)
. +.. +. .+++|+.|+|++| .++.+|. +..+++|++|++++|. +..++.....
T Consensus 418 ~-p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 418 D-GKN-FDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp T-TCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEE
T ss_pred c-hhh-hcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEE
Confidence 0 000 11 2334444444444 2333331 2234444444444432 2222211000
Q ss_pred ----CCccccccCCC--cccccceeecccccccccccCCCCCCCCcceeeecC------CccCCCCCCCCCccc-ccceE
Q 036761 801 ----ADVPEVMANLK--PFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNS------CDELRKLPLDSNSAK-ERKIV 867 (897)
Q Consensus 801 ----~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~------C~~L~~lp~~~~~~~-~~~l~ 867 (897)
..+..++..+. .+++|+.|++++| .++.+|..+..+++|+.|++++ |.-...+|......+ ++.|+
T Consensus 494 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ 572 (636)
T ss_dssp ECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred ECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence 00011122333 6777777777774 3444666666777777777743 333455665554333 37777
Q ss_pred EEeh
Q 036761 868 IRGY 871 (897)
Q Consensus 868 i~~c 871 (897)
+++|
T Consensus 573 Ls~N 576 (636)
T 4eco_A 573 IGSN 576 (636)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7776
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=6.9e-23 Score=241.63 Aligned_cols=169 Identities=17% Similarity=0.092 Sum_probs=88.0
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcC
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFD 753 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 753 (897)
+..+++|+.|++++|.+..++.. ...+++|+.|++++|... ......+..+++|++|++++|.....++... +..
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~---l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSG---LVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGC-LEN 348 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSS---CCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCSST-TTT
T ss_pred hccccCCCEEeccCCccCCCChh---hcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccchhh-hhc
Confidence 56677777777777776654332 233456777777776532 2222345666777777777665443332222 445
Q ss_pred CCCccEEEEeCCCCCCCCc----ccccCCCccEEEEecCchhhhhhcccc--c----------CCcccc--ccCCCcccc
Q 036761 754 FRSLKKIQIYGCHRLKDLT----FLLFAPNLKSIEVSSCFAMEEIISEAK--F----------ADVPEV--MANLKPFAQ 815 (897)
Q Consensus 754 l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~i~~~~~--~----------~~~~~~--~~~~~~~~~ 815 (897)
+++|++|++++| .+...+ .+..+++|++|++++|.. ..++.... . ..+... ...+..+++
T Consensus 349 l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 349 LENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp CTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSC-EEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred cCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcC-CcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 666777777666 333322 345566666666666532 22211000 0 000000 012445566
Q ss_pred cceeecccccccccccCCCCCCCCcceeeecCCc
Q 036761 816 LYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 816 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~ 849 (897)
|+.|++++|......+..+..+++|++|++++|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6666666654333334444556666666666653
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.5e-23 Score=251.07 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=52.1
Q ss_pred CCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccC
Q 036761 754 FRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYK 832 (897)
Q Consensus 754 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 832 (897)
+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|. .++.+++|+.|+|+++.....+|.
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGCTTCCEEECCSSCCEECCCG
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCCCCCCEEECCCCcccCcCCh
Confidence 3455566666653222333 355566666666666543323322 455566666666666554445665
Q ss_pred CCCCCCCcceeeecCCccCCCCCCCCCcc
Q 036761 833 RPLPFPCLRDLTVNSCDELRKLPLDSNSA 861 (897)
Q Consensus 833 ~~~~l~~L~~L~i~~C~~L~~lp~~~~~~ 861 (897)
.+..+++|++|++++|+--..+|.+....
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 727 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFE 727 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSSSGG
T ss_pred HHhCCCCCCEEECcCCcccccCCCchhhc
Confidence 56666666666666655445556544433
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=3.1e-23 Score=248.03 Aligned_cols=287 Identities=14% Similarity=0.114 Sum_probs=168.9
Q ss_pred ccCCccceeeehhccccccc------------------cchhh-hcCCCcccEEEccCCCCCcccCccccCccCCCEeec
Q 036761 538 VPTCLHLLTLFLIFNEELEM------------------ITSDF-FKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDL 598 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~------------------l~~~~-~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 598 (897)
+.++++|++|+|+ ++.+.. +|..+ |.++++|++|+|++|...+.+|..++++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 5667777888887 555655 66652 337778888888777556677777777888888888
Q ss_pred cCCC-ccc--cChhhhcCC-------cCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCc
Q 036761 599 SGTA-IRE--LPKELNALE-------NLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGG 667 (897)
Q Consensus 599 ~~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 667 (897)
++|+ ++. +|..+++++ +|++|++++|.+ ..+|. +.++++++|++|++++|....
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~l~~L~~L~~L~Ls~N~l~~-------------- 587 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVRH-------------- 587 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC-CBCCCHHHHTTCTTCCEEECTTSCCCB--------------
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC-CccCChhhhhcCCCCCEEECCCCCccc--------------
Confidence 8776 763 777666655 788888887775 47776 227778888888877766431
Q ss_pred cchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhcccc-ceeEEEeccCCCccccccccccc--CCCCceeeeecCCccE
Q 036761 668 DLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRC-TQALYLYSFKRSEPLDVSALAGL--KHLNRLWIHECEELEE 744 (897)
Q Consensus 668 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~l~~ 744 (897)
.+ .++.+++|+.|++++|.+..++.. ...+++ |+.|+|++|... .++ ..+..+ ++|+.|++++|.....
T Consensus 588 --lp-~~~~L~~L~~L~Ls~N~l~~lp~~---l~~l~~~L~~L~Ls~N~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 588 --LE-AFGTNVKLTDLKLDYNQIEEIPED---FCAFTDQVEGLGFSHNKLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp --CC-CCCTTSEESEEECCSSCCSCCCTT---SCEECTTCCEEECCSSCCC-SCC-SCCCTTCSSCEEEEECCSSCTTTT
T ss_pred --ch-hhcCCCcceEEECcCCccccchHH---HhhccccCCEEECcCCCCC-cCc-hhhhccccCCCCEEECcCCcCCCc
Confidence 33 677788888888888887654422 233445 888888877633 333 223333 3477777777644321
Q ss_pred EE---ecccCcCCCCccEEEEeCCCCCCCCcc--cccCCCccEEEEecCchhhhhhcccccCCccccccCCCccccccee
Q 036761 745 LE---MARQPFDFRSLKKIQIYGCHRLKDLTF--LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSL 819 (897)
Q Consensus 745 l~---~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L 819 (897)
++ .......+++|+.|+|++| .+..+|. +..+++|+.|+|++| .+..++...+... ......+++|+.|
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~----~~~l~nl~~L~~L 733 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPK----DGNYKNTYLLTTI 733 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCT----TSCCTTGGGCCEE
T ss_pred cccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccc----cccccccCCccEE
Confidence 10 0000112347777777777 4555552 235777888887775 3344433111000 0011223355555
Q ss_pred ecccccccccccCCCC--CCCCcceeeecCCccCCCCCC
Q 036761 820 RLGGLTVLKSIYKRPL--PFPCLRDLTVNSCDELRKLPL 856 (897)
Q Consensus 820 ~l~~~~~l~~~~~~~~--~l~~L~~L~i~~C~~L~~lp~ 856 (897)
+|++| .+..+|.... .+++|+.|++++| +++.+|.
T Consensus 734 ~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~ 770 (876)
T 4ecn_A 734 DLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPT 770 (876)
T ss_dssp ECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCC
T ss_pred ECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccch
Confidence 55553 3334444443 4555555555543 3444443
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.2e-22 Score=236.85 Aligned_cols=356 Identities=17% Similarity=0.151 Sum_probs=214.8
Q ss_pred cEEEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCC
Q 036761 501 NYLVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGAR 578 (897)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~ 578 (897)
..+...+..+..+|.. -..++++|++++|.+..++ .+..+++|++|+++ ++.++.+++..|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 3455555566655542 2368999999999998886 57899999999999 77888887777999999999999999
Q ss_pred CCcccCccccCccCCCEeeccCCCccccC--hhhhcCCcCcEecCCCCccccccChhhhhcCCcc--ceeeccccCC--C
Q 036761 579 RMSSFPLGISVLVSLQHLDLSGTAIRELP--KELNALENLQCLNLEETHFLITIPRQLISSFSSL--IVLRMFGVGD--W 652 (897)
Q Consensus 579 ~~~~lp~~i~~L~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L--~~L~l~~~~~--~ 652 (897)
.++.+|.. .+++|++|++++|.++.+| ..++++++|++|++++|.+ ...+ +..+++| ++|+++++.. .
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSCCCC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeeccccccc
Confidence 78889877 8999999999999998764 7899999999999999975 3322 5556666 9999988765 2
Q ss_pred CCCCCCCCC------------ccccC---------------------------ccchhHHhcCCCCCCEEEEEeCCcccH
Q 036761 653 SPNGKKNDS------------DLFSG---------------------------GDLLVEALRGLEHLEVLSLTLNNFQDL 693 (897)
Q Consensus 653 ~~~~~~~~~------------~~~~~---------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (897)
......... +.+.+ ....+..+..+++|+.|++..+.+...
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 211000000 00000 000112233344444444333332210
Q ss_pred H--HHHhchhccccceeEEEeccCCCccccc-------------------------------------------------
Q 036761 694 Q--CVLKSKELRRCTQALYLYSFKRSEPLDV------------------------------------------------- 722 (897)
Q Consensus 694 ~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~------------------------------------------------- 722 (897)
. ..... ....+|+.|++++|...+.++.
T Consensus 265 ~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 0 00000 0011344444444321111000
Q ss_pred ---ccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc----ccccCCCccEEEEecCchhhhhh
Q 036761 723 ---SALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT----FLLFAPNLKSIEVSSCFAMEEII 795 (897)
Q Consensus 723 ---~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~----~l~~l~~L~~L~L~~c~~l~~i~ 795 (897)
.....+++|++|++++|..... .+.. +..+++|+.|++++| .++.++ .+..+++|++|++++|.....++
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDS-VFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTT-TTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred ccccCccCCCCceEEECCCCccccc-hhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 0014556677777776643321 1121 455677777777776 455443 24566777777777654322232
Q ss_pred ccccc--CCcccc--------ccCCCcc-cccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCC-CCc-cc
Q 036761 796 SEAKF--ADVPEV--------MANLKPF-AQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLD-SNS-AK 862 (897)
Q Consensus 796 ~~~~~--~~~~~~--------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~-~~~-~~ 862 (897)
..... ..+..+ ......+ ++|+.|++++| .++.+|.....+++|+.|++++| +++.+|.. ... ..
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTS 498 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCC
Confidence 21000 000000 0011223 68999999986 77888888889999999999995 68899976 332 33
Q ss_pred ccceEEEeh
Q 036761 863 ERKIVIRGY 871 (897)
Q Consensus 863 ~~~l~i~~c 871 (897)
++.++++++
T Consensus 499 L~~L~l~~N 507 (562)
T 3a79_B 499 LQYIWLHDN 507 (562)
T ss_dssp CCCEECCSC
T ss_pred CCEEEecCC
Confidence 488888765
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.5e-22 Score=218.95 Aligned_cols=294 Identities=17% Similarity=0.171 Sum_probs=219.4
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~ 599 (897)
+++.++++++.+..+|.. -.++|++|+++ ++.++.++...|.++++|++|+|++| .++.+ |..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECC-CCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 678899998888888753 24789999999 77899998877999999999999999 66665 8889999999999999
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
+|.++.+|..+. ++|++|++++|.+ ..++...+.++++|++|+++++.... ....+..+..+++
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l~~ 172 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKS-------------SGIENGAFQGMKK 172 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCG-------------GGBCTTGGGGCTT
T ss_pred CCcCCccChhhc--ccccEEECCCCcc-cccCHhHhcCCccccEEECCCCcCCc-------------cCcChhhccCCCC
Confidence 999999998775 8999999999985 67777779999999999999876431 1124567888999
Q ss_pred CCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 680 LEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
|+.|++++|.+..++.. ..++|+.|++++|.. .......+..+++|++|++++|. ++.+++.. +..+++|+.
T Consensus 173 L~~L~l~~n~l~~l~~~-----~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~ 244 (330)
T 1xku_A 173 LSYIRIADTNITTIPQG-----LPPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRE 244 (330)
T ss_dssp CCEEECCSSCCCSCCSS-----CCTTCSEEECTTSCC-CEECTGGGTTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCE
T ss_pred cCEEECCCCccccCCcc-----ccccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc-CceeChhh-ccCCCCCCE
Confidence 99999999988765422 235889999988863 33434567788999999999874 44443333 567889999
Q ss_pred EEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccc--cccCCCCC
Q 036761 760 IQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLK--SIYKRPLP 836 (897)
Q Consensus 760 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~ 836 (897)
|+|++| .++.+| .+..+++|++|++++| .++.++...+... .....+++|+.|++.+++... ..+..+..
T Consensus 245 L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 245 LHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-----GYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp EECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-----SCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred EECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-----ccccccccccceEeecCcccccccCcccccc
Confidence 999998 566665 5778899999999986 4555543221111 012235788888888866421 12234445
Q ss_pred CCCcceeeecCC
Q 036761 837 FPCLRDLTVNSC 848 (897)
Q Consensus 837 l~~L~~L~i~~C 848 (897)
+++|+.++++++
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 677888877764
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=3.1e-22 Score=244.05 Aligned_cols=149 Identities=21% Similarity=0.247 Sum_probs=124.2
Q ss_pred EEEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
.+...+.++..+|. ...++++|++++|.+..++ .+..+++|++|++++++.+..+++..|.++++|++|+|++| .
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-K 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-C
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-c
Confidence 44555666777776 5579999999999998874 57899999999999766777887777999999999999999 5
Q ss_pred Ccc-cCccccCccCCCEeeccCCCccc-cChh--hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCC
Q 036761 580 MSS-FPLGISVLVSLQHLDLSGTAIRE-LPKE--LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWS 653 (897)
Q Consensus 580 ~~~-lp~~i~~L~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~ 653 (897)
+.. .|..++++++|++|+|++|.++. +|.. ++++++|++|++++|.+....+...++++++|++|+++++....
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 555 58899999999999999999985 5665 89999999999999986544443448999999999999987543
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=5.6e-23 Score=240.69 Aligned_cols=349 Identities=15% Similarity=0.121 Sum_probs=216.5
Q ss_pred cccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCcc
Q 036761 515 NVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLV 591 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~ 591 (897)
.+..+.++++|++++|.+..++. +.++++|++|+++ ++.+..+++..|.++++|++|++++| .++.+|. .+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCcccccccccccc-ccccCCCccccccc
Confidence 45667899999999999988763 6889999999999 67788888878999999999999999 7887775 699999
Q ss_pred CCCEeeccCCCccc--cChhhhcCCcCcEecCCCCccccccChhhhhcCCcc----ceeeccccCCCCCCCCCCCC----
Q 036761 592 SLQHLDLSGTAIRE--LPKELNALENLQCLNLEETHFLITIPRQLISSFSSL----IVLRMFGVGDWSPNGKKNDS---- 661 (897)
Q Consensus 592 ~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~---- 661 (897)
+|++|++++|.++. +|..++++++|++|++++|.+ ..++...++.+++| ++|+++++............
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 99999999999985 799999999999999999985 55554447777777 67777766543221100000
Q ss_pred ------c---------------------------------------cc-----------------cCccchhHHhcCCCC
Q 036761 662 ------D---------------------------------------LF-----------------SGGDLLVEALRGLEH 679 (897)
Q Consensus 662 ------~---------------------------------------~~-----------------~~~~~~~~~l~~l~~ 679 (897)
+ .+ .-....+..+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 0 00 000112233444555
Q ss_pred CCEEEEEeCCcccHHHHHhc---------------------------------------hhccccceeEEEeccCCCccc
Q 036761 680 LEVLSLTLNNFQDLQCVLKS---------------------------------------KELRRCTQALYLYSFKRSEPL 720 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~---------------------------------------~~~~~~L~~L~L~~~~~~~~~ 720 (897)
|+.|+++.|.+..++..... ...+++|+.|++++|......
T Consensus 284 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 363 (570)
T 2z63_A 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363 (570)
T ss_dssp CSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred ccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccc
Confidence 66666555544332211100 022346677777666532211
Q ss_pred c-cccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCC-c--ccccCCCccEEEEecCchhhhhhc
Q 036761 721 D-VSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDL-T--FLLFAPNLKSIEVSSCFAMEEIIS 796 (897)
Q Consensus 721 ~-~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l-~--~l~~l~~L~~L~L~~c~~l~~i~~ 796 (897)
. ...+..+++|++|++++|. +..++.. +..+++|++|++++|. +... + .+..+++|++|++++|......+.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred cccccccccCccCEEECCCCc-ccccccc--ccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 0 1235566777777777663 2323222 2344555555555542 2211 1 233444444444444322111110
Q ss_pred cc-cc----------CCc--cccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCC-C-cc
Q 036761 797 EA-KF----------ADV--PEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDS-N-SA 861 (897)
Q Consensus 797 ~~-~~----------~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~-~-~~ 861 (897)
.. .. ..+ ...+..+..+++|+.|++++|......+..+..+++|+.|++++| +++.+|... . ..
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhccc
Confidence 00 00 000 012346778899999999997544444667778999999999997 688877543 2 23
Q ss_pred cccceEEEeh
Q 036761 862 KERKIVIRGY 871 (897)
Q Consensus 862 ~~~~l~i~~c 871 (897)
+++.++++++
T Consensus 519 ~L~~L~l~~N 528 (570)
T 2z63_A 519 SLQKIWLHTN 528 (570)
T ss_dssp TCCEEECCSS
T ss_pred CCcEEEecCC
Confidence 4588888874
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=5.4e-23 Score=222.62 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=214.6
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~ 599 (897)
+++.++++++.+..+|... .++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 6788999999988887532 4789999999 67788888777999999999999999 66665 7789999999999999
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
+|.++.+|..+. ++|++|++++|.+ ..+|...+.++++|++|+++++.... ....+..+..+ +
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLEN-------------SGFEPGAFDGL-K 173 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBG-------------GGSCTTSSCSC-C
T ss_pred CCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCcccc-------------CCCCcccccCC-c
Confidence 999999998776 8999999999985 67777778999999999999886531 11134456666 8
Q ss_pred CCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 680 LEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
|+.|+++.|.+..++. ...++|+.|++++|.. .......+..+++|+.|++++|. +..+++.. +..+++|+.
T Consensus 174 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~ 245 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRE 245 (332)
T ss_dssp CSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCE
T ss_pred cCEEECcCCCCCccCc-----cccCCCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCE
Confidence 9999999998876542 2235788888888763 33333467788889999998874 44333322 567888999
Q ss_pred EEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccc--ccccCCCCC
Q 036761 760 IQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVL--KSIYKRPLP 836 (897)
Q Consensus 760 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~ 836 (897)
|+|++| .++.+| .+..+++|+.|++++| .++.++...+... .....+++|+.|++.+++.. ...+..+..
T Consensus 246 L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 246 LHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-----GFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp EECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-----SCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred EECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc-----ccccccccccceEeecCcccccccCcccccc
Confidence 999988 566666 4778899999999886 4555433111110 01123677888888887643 223334556
Q ss_pred CCCcceeeecCCc
Q 036761 837 FPCLRDLTVNSCD 849 (897)
Q Consensus 837 l~~L~~L~i~~C~ 849 (897)
+++|+.|++.+|.
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 7788888887764
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.7e-22 Score=233.53 Aligned_cols=124 Identities=16% Similarity=0.115 Sum_probs=108.7
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 601 (897)
+++++++|.+..+|.... ++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNIS-QNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECC-CCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 678999999999886322 899999999 77788898877999999999999999 66665 788999999999999999
Q ss_pred CccccChhhhcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccCCC
Q 036761 602 AIRELPKELNALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVGDW 652 (897)
Q Consensus 602 ~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~ 652 (897)
.|+.+|.. .+++|++|++++|.+.. .+|.. ++++++|++|+++++...
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccc
Confidence 99999987 89999999999998644 46665 999999999999998753
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.4e-22 Score=239.04 Aligned_cols=265 Identities=19% Similarity=0.188 Sum_probs=128.7
Q ss_pred ccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccC
Q 036761 587 ISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSG 666 (897)
Q Consensus 587 i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 666 (897)
++.+++|++|++++|.++.+|..+..+++|++|++++|.+ ..+++..+..+++|++|++++|.....
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~~~~~------------ 340 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLE------------ 340 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCC-SBGGGGCGGGCTTCSEEECCSCSSCCB------------
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCc-CcCchhhhhccCcCCEEECCCCCcccc------------
Confidence 5667777777777777777777777777777777777764 444333467777777777777653310
Q ss_pred ccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEE
Q 036761 667 GDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELE 746 (897)
Q Consensus 667 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 746 (897)
.....+..+++|+.|++++|.+............+++|+.|++++|... ......+..+++|++|++++|.... ..
T Consensus 341 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 416 (606)
T 3t6q_A 341 --LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKV-KD 416 (606)
T ss_dssp --CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEEC-CT
T ss_pred --cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCC-cc
Confidence 0112244445555555555544332111111222334555555444321 1111233444445555444442211 11
Q ss_pred ecccCcCCCCccEEEEeCCCCCCCC-c-ccccCCCccEEEEecCchhhhhhcc-cc-------------cCCcccc-ccC
Q 036761 747 MARQPFDFRSLKKIQIYGCHRLKDL-T-FLLFAPNLKSIEVSSCFAMEEIISE-AK-------------FADVPEV-MAN 809 (897)
Q Consensus 747 ~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~-~~-------------~~~~~~~-~~~ 809 (897)
+...+..+++|+.|++++|. +... + .+..+++|++|++++|......+.. .. ...+... +..
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred cchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 11112334444444444442 2211 1 2334444444444443321110000 00 0000011 124
Q ss_pred CCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCC-C-cccccceEEEeh
Q 036761 810 LKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDS-N-SAKERKIVIRGY 871 (897)
Q Consensus 810 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~-~-~~~~~~l~i~~c 871 (897)
+..+++|+.|++++|......+..+..+++| .|++++| +++.+|... . ..+++.++++++
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 5667778888887765444455556667777 7777776 455555432 2 223477777764
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=7.3e-22 Score=230.08 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=119.8
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~ 599 (897)
..++++++++.++.+|... .++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECC-CCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 4589999999999988632 3899999999 77899999877999999999999999 66665 7789999999999999
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccC--hhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIP--RQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGL 677 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 677 (897)
+|.++.+|.. .+++|++|++++|.+ ..+| .. ++++++|++|+++++..... ....+..+
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l-~~l~~p~~-~~~l~~L~~L~L~~n~l~~~---------------~~~~l~~L 169 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDF-DVLPVCKE-FGNLTKLTFLGLSAAKFRQL---------------DLLPVAHL 169 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCC-SBCCCCGG-GGGCTTCCEEEEECSBCCTT---------------TTGGGTTS
T ss_pred CCcCCccCcc--ccccCCEEECCCCCc-cccCchHh-hcccCcccEEecCCCccccC---------------chhhhhhc
Confidence 9999999988 899999999999985 5544 44 99999999999999775321 22223333
Q ss_pred CCCCEEEEEeCCc
Q 036761 678 EHLEVLSLTLNNF 690 (897)
Q Consensus 678 ~~L~~L~l~~~~~ 690 (897)
+|+.|+++.|.+
T Consensus 170 -~L~~L~L~~n~l 181 (562)
T 3a79_B 170 -HLSCILLDLVSY 181 (562)
T ss_dssp -CEEEEEEEESSC
T ss_pred -eeeEEEeecccc
Confidence 347888877765
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=4.2e-22 Score=224.29 Aligned_cols=300 Identities=16% Similarity=0.140 Sum_probs=228.1
Q ss_pred EEEEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS 581 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~ 581 (897)
.+...+..+...+.+..+.++++|++++|.+..++ +..+++|++|+++ ++.++.++ ++++++|++|++++| .++
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L~~N-~l~ 119 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNCDTN-KLT 119 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEECCSS-CCS
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEECCCC-cCC
Confidence 34445555566667778899999999999999986 8899999999999 67788875 789999999999999 788
Q ss_pred ccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCC
Q 036761 582 SFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDS 661 (897)
Q Consensus 582 ~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 661 (897)
.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..++.++ +..+++|++|++++|....
T Consensus 120 ~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-------- 184 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-------- 184 (457)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--------
T ss_pred eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--------
Confidence 776 899999999999999999985 8899999999999997677774 7899999999999987543
Q ss_pred ccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCC
Q 036761 662 DLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEE 741 (897)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 741 (897)
.+ +..+++|+.|++++|.+..+ ....+++|+.|++++|.... ++ +..+++|+.|++++|.
T Consensus 185 --------l~--l~~l~~L~~L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~- 244 (457)
T 3bz5_A 185 --------LD--VSQNKLLNRLNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNP- 244 (457)
T ss_dssp --------CC--CTTCTTCCEEECCSSCCSCC-----CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSC-
T ss_pred --------ec--cccCCCCCEEECcCCcCCee-----ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCc-
Confidence 22 67889999999999988775 23445789999999987433 33 6778999999999884
Q ss_pred ccEEEecccCcCCCCccEEEEeC----------CCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCC
Q 036761 742 LEELEMARQPFDFRSLKKIQIYG----------CHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLK 811 (897)
Q Consensus 742 l~~l~~~~~~~~l~~L~~L~L~~----------c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~ 811 (897)
++.++ ...+++|+.|++++ |..+..+| .+.+++|+.|++++|..++.++.. ...+..+ .+.
T Consensus 245 l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~--~~~L~~L--~l~ 315 (457)
T 3bz5_A 245 LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQ--AAGITEL--DLS 315 (457)
T ss_dssp CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECT--TCCCSCC--CCT
T ss_pred CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccC--CCcceEe--chh
Confidence 44333 23456666555544 43333333 456899999999999877776541 1122222 356
Q ss_pred cccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCC
Q 036761 812 PFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLP 855 (897)
Q Consensus 812 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp 855 (897)
.+++|+.|+++++ .++.++ +..+++|+.|+++++ +++.+|
T Consensus 316 ~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 316 QNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp TCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS-CCCBCT
T ss_pred hcccCCEEECCCC-cccccc--cccCCcCcEEECCCC-CCCCcc
Confidence 6788888888874 455553 677899999998874 454443
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=5.8e-22 Score=236.99 Aligned_cols=263 Identities=18% Similarity=0.156 Sum_probs=169.0
Q ss_pred EEEcCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++..+|... ..++++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|+|++| .+
T Consensus 9 ~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN-EL 85 (680)
T ss_dssp EECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSS-CC
T ss_pred eECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCC-cc
Confidence 444445555555322 2689999999999988764 7889999999999 67788887778999999999999999 77
Q ss_pred cccCc-cccCccCCCEeeccCCCccccC-hhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC
Q 036761 581 SSFPL-GISVLVSLQHLDLSGTAIRELP-KELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK 658 (897)
Q Consensus 581 ~~lp~-~i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
+.+|. .++++++|++|++++|.++.+| ..++++++|++|++++|.+.. .+...+.++++|++|++++|.....
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~---- 160 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQAL---- 160 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCB----
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCccccc----
Confidence 88876 5899999999999999999887 468999999999999998644 4444488999999999998765432
Q ss_pred CCCccccCccchhHHh--cCCCCCCEEEEEeCCcccHHHH-Hhc------------------------hhccccceeEEE
Q 036761 659 NDSDLFSGGDLLVEAL--RGLEHLEVLSLTLNNFQDLQCV-LKS------------------------KELRRCTQALYL 711 (897)
Q Consensus 659 ~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~-~~~------------------------~~~~~~L~~L~L 711 (897)
.+..+ ..+++|+.|+++.|.+...... +.. .-..+.|+.|++
T Consensus 161 -----------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 161 -----------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp -----------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred -----------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 12222 2335555555555544322110 000 001135566666
Q ss_pred eccCCCcccccccccccC--CCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCC-c-ccccCCCccEEEEec
Q 036761 712 YSFKRSEPLDVSALAGLK--HLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDL-T-FLLFAPNLKSIEVSS 787 (897)
Q Consensus 712 ~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~ 787 (897)
+++.... .....+..++ +|+.|++++|. +..+++.. +..+++|++|++++| .+..+ + .+..+++|+.|++++
T Consensus 230 ~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 230 SNSQLST-TSNTTFLGLKWTNLTMLDLSYNN-LNVVGNDS-FAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp TTSCCCE-ECTTTTGGGGGSCCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTT
T ss_pred cCCcccc-cChhHhhccCcCCCCEEECCCCC-cCccCccc-ccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccc
Confidence 6554222 1112333333 36666666653 33332222 445666666666666 23322 2 345566666666655
Q ss_pred C
Q 036761 788 C 788 (897)
Q Consensus 788 c 788 (897)
|
T Consensus 306 ~ 306 (680)
T 1ziw_A 306 S 306 (680)
T ss_dssp C
T ss_pred h
Confidence 3
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.9e-22 Score=217.07 Aligned_cols=230 Identities=20% Similarity=0.297 Sum_probs=136.1
Q ss_pred CccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEec
Q 036761 541 CLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLN 620 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 620 (897)
.+++++|+++ ++.+..+|.. +.++++|++|+|++| .++.+|..++++++|++|+|++|.++.+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~-~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELR-SVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEE-SSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEcc-CCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 4566777777 5566677765 455777777777777 566777777777777777777777777777777777777777
Q ss_pred CCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhch
Q 036761 621 LEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSK 700 (897)
Q Consensus 621 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 700 (897)
+++|...+.+|.. +.. +. ....+.++++|+.|++++|.+..++
T Consensus 157 L~~n~~~~~~p~~-~~~------~~------------------------~~~~~~~l~~L~~L~L~~n~l~~lp------ 199 (328)
T 4fcg_A 157 IRACPELTELPEP-LAS------TD------------------------ASGEHQGLVNLQSLRLEWTGIRSLP------ 199 (328)
T ss_dssp EEEETTCCCCCSC-SEE------EC-------------------------CCCEEESTTCCEEEEEEECCCCCC------
T ss_pred CCCCCCccccChh-Hhh------cc------------------------chhhhccCCCCCEEECcCCCcCcch------
Confidence 7777666666654 222 00 1112344556666666655543221
Q ss_pred hccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCC
Q 036761 701 ELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPN 779 (897)
Q Consensus 701 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~ 779 (897)
..+..+++|++|++++|.. ..++.. +..+++|+.|+|++|.....+| .++.+++
T Consensus 200 ----------------------~~l~~l~~L~~L~L~~N~l-~~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 200 ----------------------ASIANLQNLKSLKIRNSPL-SALGPA--IHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp ----------------------GGGGGCTTCCEEEEESSCC-CCCCGG--GGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred ----------------------HhhcCCCCCCEEEccCCCC-CcCchh--hccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 1233445555555555432 222221 3345556666666554444444 3455666
Q ss_pred ccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecC
Q 036761 780 LKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNS 847 (897)
Q Consensus 780 L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~ 847 (897)
|++|+|++|+.+..++. .+..+++|+.|+|++|+.++.+|..+..+++|+.+.+..
T Consensus 255 L~~L~L~~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPL------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCEEECTTCTTCCBCCT------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCEEECCCCCchhhcch------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 66666666655444432 455566666666666666666666666666666666553
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=3.5e-22 Score=232.63 Aligned_cols=127 Identities=22% Similarity=0.294 Sum_probs=97.9
Q ss_pred cccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc--cCccccCc
Q 036761 515 NVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS--FPLGISVL 590 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~--lp~~i~~L 590 (897)
.+..+.++++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|+++++|++|+|++| .++. .|..++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l 122 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS-DNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNL 122 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTC
T ss_pred hhhcCCcccEEECCCCCcCccChhhccccccCCEEECC-CCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhcc
Confidence 4566778999999999988876 36888999999999 77788888887899999999999999 6663 46778889
Q ss_pred cCCCEeeccCCC-ccccC-hhhhcCCcCcEecCCCCccccccChhhhhcCCcccee
Q 036761 591 VSLQHLDLSGTA-IRELP-KELNALENLQCLNLEETHFLITIPRQLISSFSSLIVL 644 (897)
Q Consensus 591 ~~L~~L~L~~~~-i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 644 (897)
++|++|++++|. +..+| ..+.++++|++|++++|.+....|.. ++.+++|++|
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L 177 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHL 177 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceE
Confidence 999999999987 66776 46888888888888888764444443 4443333333
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.8e-22 Score=212.80 Aligned_cols=239 Identities=21% Similarity=0.288 Sum_probs=185.5
Q ss_pred CCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCcccee
Q 036761 565 SMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVL 644 (897)
Q Consensus 565 ~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 644 (897)
...++++|+|++| .++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|.+ ..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHH-HhcCcCCCEE
Confidence 4688999999999 888999999999999999999999999999999999999999999985 588876 8888888888
Q ss_pred eccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccccc
Q 036761 645 RMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSA 724 (897)
Q Consensus 645 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 724 (897)
++++|..... .+..+.. ..+ ...
T Consensus 156 ~L~~n~~~~~---------------~p~~~~~--------------------------------~~~----------~~~ 178 (328)
T 4fcg_A 156 SIRACPELTE---------------LPEPLAS--------------------------------TDA----------SGE 178 (328)
T ss_dssp EEEEETTCCC---------------CCSCSEE--------------------------------EC-----------CCC
T ss_pred ECCCCCCccc---------------cChhHhh--------------------------------ccc----------hhh
Confidence 8887653221 1111100 000 013
Q ss_pred ccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCc
Q 036761 725 LAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADV 803 (897)
Q Consensus 725 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~ 803 (897)
+.++++|++|++++|. ++.++. . +..+++|++|+|++| .++.++ .+..+++|++|++++|.....++.
T Consensus 179 ~~~l~~L~~L~L~~n~-l~~lp~-~-l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~------- 247 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG-IRSLPA-S-IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP------- 247 (328)
T ss_dssp EEESTTCCEEEEEEEC-CCCCCG-G-GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC-------
T ss_pred hccCCCCCEEECcCCC-cCcchH-h-hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH-------
Confidence 5678999999999984 444433 2 568999999999999 555554 688899999999999887665544
Q ss_pred cccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCCCCCCcccc-cceEEEehhhhhcccccc
Q 036761 804 PEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKE-RKIVIRGYRKWWEQLKWV 881 (897)
Q Consensus 804 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp~~~~~~~~-~~l~i~~c~~~~~~l~~~ 881 (897)
.+..+++|+.|++++|+.+..+|..+..+++|+.|++++|+.++.+|......+. +.+.+. .++...+.+.
T Consensus 248 -----~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~--~~~~~~l~~~ 319 (328)
T 4fcg_A 248 -----IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP--PHLQAQLDQH 319 (328)
T ss_dssp -----CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC--GGGSCC----
T ss_pred -----HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC--HHHHHHHhhh
Confidence 6788999999999999999999998999999999999999999999987665433 444443 3444444433
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=4.2e-22 Score=213.19 Aligned_cols=254 Identities=18% Similarity=0.166 Sum_probs=138.5
Q ss_pred ccceeeehhcccccc---ccchhhhcCCCcccEEEccC-CCCCcccCccccCccCCCEeeccCCCcc-ccChhhhcCCcC
Q 036761 542 LHLLTLFLIFNEELE---MITSDFFKSMPRLKVLNLSG-ARRMSSFPLGISVLVSLQHLDLSGTAIR-ELPKELNALENL 616 (897)
Q Consensus 542 ~~L~~L~l~~~~~l~---~l~~~~~~~l~~L~~L~Ls~-~~~~~~lp~~i~~L~~L~~L~L~~~~i~-~lp~~i~~L~~L 616 (897)
.+++.|+++ ++.+. .+|.. |.++++|++|+|++ |...+.+|..++++++|++|++++|.++ .+|..+.++++|
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECC-CCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 356666666 34443 34443 66677777777763 4233356666777777777777777666 566667777777
Q ss_pred cEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCC-CCCEEEEEeCCcccHHH
Q 036761 617 QCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLE-HLEVLSLTLNNFQDLQC 695 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~ 695 (897)
++|++++|.+...+|.. +..+++|++|++++|.... ..+..+..++ +|+.|++++|.+....
T Consensus 128 ~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~---------------~~p~~l~~l~~~L~~L~L~~N~l~~~~- 190 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG---------------AIPDSYGSFSKLFTSMTISRNRLTGKI- 190 (313)
T ss_dssp CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE---------------ECCGGGGCCCTTCCEEECCSSEEEEEC-
T ss_pred CEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC---------------cCCHHHhhhhhcCcEEECcCCeeeccC-
Confidence 77777777654455654 6667777777776655321 1445566665 6677766666543210
Q ss_pred HHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccc
Q 036761 696 VLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLL 775 (897)
Q Consensus 696 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~ 775 (897)
...+..++ |+.|++++|.. +...+.. +..+++|+.|+|++|.....++.+.
T Consensus 191 --------------------------~~~~~~l~-L~~L~Ls~N~l-~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~ 241 (313)
T 1ogq_A 191 --------------------------PPTFANLN-LAFVDLSRNML-EGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVG 241 (313)
T ss_dssp --------------------------CGGGGGCC-CSEEECCSSEE-EECCGGG-CCTTSCCSEEECCSSEECCBGGGCC
T ss_pred --------------------------ChHHhCCc-ccEEECcCCcc-cCcCCHH-HhcCCCCCEEECCCCceeeecCccc
Confidence 01222233 55555555422 2111111 3445556666665553222333445
Q ss_pred cCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccCCCCC
Q 036761 776 FAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLP 855 (897)
Q Consensus 776 ~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L~~lp 855 (897)
.+++|++|++++|.....++. .+..+++|+.|++++++....+|.. ..+++|+.|++.++|.+...|
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTLPQ------------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCTTCCEEECCSSCCEECCCG------------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred ccCCCCEEECcCCcccCcCCh------------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 556666666666533222221 3455566666666665444444443 556666666666666665544
Q ss_pred C
Q 036761 856 L 856 (897)
Q Consensus 856 ~ 856 (897)
.
T Consensus 309 ~ 309 (313)
T 1ogq_A 309 L 309 (313)
T ss_dssp S
T ss_pred C
Confidence 3
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=233.82 Aligned_cols=311 Identities=15% Similarity=0.125 Sum_probs=215.6
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 601 (897)
+..+.+++++..+|. ..++|++|+|+ ++.++.+++..|.++++|++|+|++|..+..+ |..++++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456677788888887 56899999999 77788887777999999999999999666666 778999999999999999
Q ss_pred Ccccc-ChhhhcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 602 AIREL-PKELNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 602 ~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
.++.+ |..++++++|++|+|++|.+...+|. ..+.++++|++|++++|..... .....++++++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~--------------~~~~~~~~L~~ 149 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL--------------YLHPSFGKLNS 149 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC--------------CCCGGGGTCSS
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc--------------ccchhHhhCCC
Confidence 99977 77899999999999999986554543 3478999999999999876432 12356889999
Q ss_pred CCEEEEEeCCcccHHH-HHhchhcccc------------------------------ceeEEEeccCCCccccc------
Q 036761 680 LEVLSLTLNNFQDLQC-VLKSKELRRC------------------------------TQALYLYSFKRSEPLDV------ 722 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~-~~~~~~~~~~------------------------------L~~L~L~~~~~~~~~~~------ 722 (897)
|+.|++++|.+..... .+.... .++ |+.|++++|......+.
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHH-HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCEEECCCCcCCeeCHHHccccc-CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 9999999988754211 000000 023 44555554421100000
Q ss_pred -----------------------------ccccc--cCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCC
Q 036761 723 -----------------------------SALAG--LKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDL 771 (897)
Q Consensus 723 -----------------------------~~l~~--l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l 771 (897)
..+.. .++|+.|++++|. +..+.+. .+..+++|+.|+|++| .+..+
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~i~~~ 305 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSR-VFETLKDLKVLNLAYN-KINKI 305 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSC-CSSSCCCCCEEEEESC-CCCEE
T ss_pred CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChh-hhhcCCCCCEEECCCC-cCCCC
Confidence 00111 2456667776653 3333222 2556778888888887 44443
Q ss_pred c--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccC-CCCCCCCcceeeecCC
Q 036761 772 T--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYK-RPLPFPCLRDLTVNSC 848 (897)
Q Consensus 772 ~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~i~~C 848 (897)
+ .+..+++|++|+|++|. +..+.. ..+..+++|+.|+++++ .+..++. .+..+++|+.|++++|
T Consensus 306 ~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 306 ADEAFYGLDNLQVLNLSYNL-LGELYS-----------SNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CTTTTTTCSSCCEEEEESCC-CSCCCS-----------CSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred ChHHhcCCCCCCEEECCCCC-CCccCH-----------HHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence 2 46677888888888764 333211 25677888999999886 4555544 4566889999999886
Q ss_pred ccCCCCCCCCCcccccceEEEeh
Q 036761 849 DELRKLPLDSNSAKERKIVIRGY 871 (897)
Q Consensus 849 ~~L~~lp~~~~~~~~~~l~i~~c 871 (897)
.++.+|. ..+++.+.+.++
T Consensus 373 -~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 373 -ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp -CSCCCSS---CCSCSEEEEESC
T ss_pred -CCCcccC---CCCcchhccCCC
Confidence 5777665 234577777766
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.9e-21 Score=229.82 Aligned_cols=245 Identities=17% Similarity=0.141 Sum_probs=185.0
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc-cCccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS-FPLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~L~L~~~ 601 (897)
+.++.+++.+..+|... .+++++|+++ ++.+..+++..|.++++|++|+|++| .++. .|..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcccccccc-CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 45777788888887532 3789999999 77899999888999999999999999 5555 4777899999999999999
Q ss_pred CccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 602 AIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 602 ~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
.++.+|. .++++++|++|++++|.+ ..+|+..++++++|++|++++|..... .+..+.++++|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~l~~L 147 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSI-QKIKNNPFVKQKNLITLDLSHNGLSST---------------KLGTQVQLENL 147 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCC-CCCCSCTTTTCTTCCEEECCSSCCSCC---------------CCCSSSCCTTC
T ss_pred ccCccChhhhccCCCCCEEECCCCcc-CccChhHccccCCCCEEECCCCccccc---------------CchhhcccccC
Confidence 9999997 599999999999999985 667755599999999999999875432 34457789999
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccccccccc---------------------------CCCCc
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGL---------------------------KHLNR 733 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l---------------------------~~L~~ 733 (897)
+.|++++|.+.............++|+.|++++|.... .....+..+ ++|+.
T Consensus 148 ~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CEEEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 99999999887654322112223689999999885322 222222222 56777
Q ss_pred eeeeecCCccEEEecccCcCC--CCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCch
Q 036761 734 LWIHECEELEELEMARQPFDF--RSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFA 790 (897)
Q Consensus 734 L~l~~~~~l~~l~~~~~~~~l--~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~ 790 (897)
|++++|. +....+.+ +..+ ++|+.|+|++| .++.++ .+..+++|++|++++|..
T Consensus 227 L~L~~n~-l~~~~~~~-~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 227 LSLSNSQ-LSTTSNTT-FLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp EECTTSC-CCEECTTT-TGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred EEccCCc-ccccChhH-hhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCcc
Confidence 7777663 33333333 3344 45999999999 455443 577899999999999743
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3e-21 Score=206.54 Aligned_cols=250 Identities=16% Similarity=0.117 Sum_probs=197.9
Q ss_pred ccceEeecccccccc---cc-cccCCccceeeehhcccccc-ccchhhhcCCCcccEEEccCCCCCc-ccCccccCccCC
Q 036761 520 ENARRFSLMETQIRT---LS-AVPTCLHLLTLFLIFNEELE-MITSDFFKSMPRLKVLNLSGARRMS-SFPLGISVLVSL 593 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~---l~-~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~l~~L~~L~Ls~~~~~~-~lp~~i~~L~~L 593 (897)
.++++|+++++.+.. +| .+..+++|++|++++++.+. .+|.. |.++++|++|+|++| .++ .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 478999999999874 44 57889999999999535555 55554 899999999999999 555 899999999999
Q ss_pred CEeeccCCCcc-ccChhhhcCCcCcEecCCCCccccccChhhhhcCC-ccceeeccccCCCCCCCCCCCCccccCccchh
Q 036761 594 QHLDLSGTAIR-ELPKELNALENLQCLNLEETHFLITIPRQLISSFS-SLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLV 671 (897)
Q Consensus 594 ~~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (897)
++|++++|.++ .+|..+..+++|++|++++|.+...+|.. +..++ +|++|++++|.... ..+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~---------------~~~ 191 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG---------------KIP 191 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE---------------ECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec---------------cCC
Confidence 99999999998 78999999999999999999976688887 88888 99999999876431 255
Q ss_pred HHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccC
Q 036761 672 EALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQP 751 (897)
Q Consensus 672 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~ 751 (897)
..+..++ |+.|++++|.+... ....+..+++|+.|++++|..... .+. .
T Consensus 192 ~~~~~l~-L~~L~Ls~N~l~~~---------------------------~~~~~~~l~~L~~L~L~~N~l~~~-~~~--~ 240 (313)
T 1ogq_A 192 PTFANLN-LAFVDLSRNMLEGD---------------------------ASVLFGSDKNTQKIHLAKNSLAFD-LGK--V 240 (313)
T ss_dssp GGGGGCC-CSEEECCSSEEEEC---------------------------CGGGCCTTSCCSEEECCSSEECCB-GGG--C
T ss_pred hHHhCCc-ccEEECcCCcccCc---------------------------CCHHHhcCCCCCEEECCCCceeee-cCc--c
Confidence 6677776 99999988876432 112466788999999998854332 222 4
Q ss_pred cCCCCccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccc
Q 036761 752 FDFRSLKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSI 830 (897)
Q Consensus 752 ~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 830 (897)
..+++|++|+|++|.....+| .+..+++|++|+|++|.....+|. ...+++|+.|++.+++.+...
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGGTCSSSEEEST
T ss_pred cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHHhcCCCCccCC
Confidence 578999999999994332455 688899999999999864434332 377999999999998877654
Q ss_pred c
Q 036761 831 Y 831 (897)
Q Consensus 831 ~ 831 (897)
|
T Consensus 308 p 308 (313)
T 1ogq_A 308 P 308 (313)
T ss_dssp T
T ss_pred C
Confidence 4
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.9e-20 Score=201.08 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=139.8
Q ss_pred CccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCCcccc-ChhhhcCCcCcE
Q 036761 541 CLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIREL-PKELNALENLQC 618 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~ 618 (897)
..++++++++ .+.+..+|..+ .++|++|+|++| .++.+|. .++++++|++|++++|.++.+ |..++.+++|++
T Consensus 30 ~c~l~~l~~~-~~~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 30 QCHLRVVQCS-DLGLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EEETTEEECT-TSCCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred cCCCeEEEec-CCCccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 3478999998 66788888653 378999999999 7777765 689999999999999999987 778999999999
Q ss_pred ecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHh
Q 036761 619 LNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLK 698 (897)
Q Consensus 619 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 698 (897)
|++++|.+ ..+|.. + .++|++|+++++..... ....+..+++|+.|+++.|.+........
T Consensus 105 L~Ls~n~l-~~l~~~-~--~~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 105 LYLSKNQL-KELPEK-M--PKTLQELRVHENEITKV---------------RKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp EECCSSCC-SBCCSS-C--CTTCCEEECCSSCCCBB---------------CHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred EECCCCcC-CccChh-h--cccccEEECCCCccccc---------------CHhHhcCCccccEEECCCCcCCccCcChh
Confidence 99999984 788875 3 27999999998875432 45678899999999999888753211111
Q ss_pred chhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--cccc
Q 036761 699 SKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLF 776 (897)
Q Consensus 699 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~ 776 (897)
....+++|+.|+++++... .++.. + .++|++|++++|. ++.+.+.. +..+++|+.|+|++| .++.++ .+..
T Consensus 166 ~~~~l~~L~~L~l~~n~l~-~l~~~-~--~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 238 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNIT-TIPQG-L--PPSLTELHLDGNK-ITKVDAAS-LKGLNNLAKLGLSFN-SISAVDNGSLAN 238 (330)
T ss_dssp GGGGCTTCCEEECCSSCCC-SCCSS-C--CTTCSEEECTTSC-CCEECTGG-GTTCTTCCEEECCSS-CCCEECTTTGGG
T ss_pred hccCCCCcCEEECCCCccc-cCCcc-c--cccCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCC-cCceeChhhccC
Confidence 2222334555555544321 11110 1 1445555555442 22222211 334455555555554 233222 2444
Q ss_pred CCCccEEEEecC
Q 036761 777 APNLKSIEVSSC 788 (897)
Q Consensus 777 l~~L~~L~L~~c 788 (897)
+++|++|++++|
T Consensus 239 l~~L~~L~L~~N 250 (330)
T 1xku_A 239 TPHLRELHLNNN 250 (330)
T ss_dssp STTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 555555555554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=2.3e-20 Score=201.90 Aligned_cols=285 Identities=16% Similarity=0.215 Sum_probs=198.0
Q ss_pred ccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCcccc-ChhhhcCCcCcEe
Q 036761 542 LHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIREL-PKELNALENLQCL 619 (897)
Q Consensus 542 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L 619 (897)
.++++++++ ++.+..+|..+ .++|++|++++| .++.+ |..++++++|++|++++|.++.+ |..++++++|++|
T Consensus 33 c~l~~l~~~-~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCS-DLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECC-SSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECC-CCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 478999999 67788898763 478999999999 67766 45799999999999999999987 6789999999999
Q ss_pred cCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhc
Q 036761 620 NLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKS 699 (897)
Q Consensus 620 ~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 699 (897)
++++|.+ ..+|.. +. ++|++|+++++..... ....+..+++|+.|++++|.+.........
T Consensus 108 ~L~~n~l-~~l~~~-~~--~~L~~L~l~~n~i~~~---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 108 YISKNHL-VEIPPN-LP--SSLVELRIHDNRIRKV---------------PKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp ECCSSCC-CSCCSS-CC--TTCCEEECCSSCCCCC---------------CSGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred ECCCCcC-CccCcc-cc--ccCCEEECCCCccCcc---------------CHhHhCCCccCCEEECCCCccccCCCCccc
Confidence 9999985 688876 33 8999999999876532 344578899999999999988643211122
Q ss_pred hhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccC
Q 036761 700 KELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFA 777 (897)
Q Consensus 700 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l 777 (897)
.... .|+.|+++++... .++. .+ .++|++|++++|. ++.+++.. +..+++|+.|+|++| .++.++ .+..+
T Consensus 169 ~~~l-~L~~L~l~~n~l~-~l~~-~~--~~~L~~L~l~~n~-i~~~~~~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~~l 240 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLT-GIPK-DL--PETLNELHLDHNK-IQAIELED-LLRYSKLYRLGLGHN-QIRMIENGSLSFL 240 (332)
T ss_dssp SCSC-CCSCCBCCSSBCS-SCCS-SS--CSSCSCCBCCSSC-CCCCCTTS-STTCTTCSCCBCCSS-CCCCCCTTGGGGC
T ss_pred ccCC-ccCEEECcCCCCC-ccCc-cc--cCCCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCC-cCCcCChhHhhCC
Confidence 2222 6778888777632 2321 11 2688888888774 33333222 567888888888888 555554 47788
Q ss_pred CCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCC-C------CCCCcceeeecCCcc
Q 036761 778 PNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRP-L------PFPCLRDLTVNSCDE 850 (897)
Q Consensus 778 ~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~------~l~~L~~L~i~~C~~ 850 (897)
++|++|++++|. ++.++. .+..+++|+.|+++++ .++.++... . .+++|+.|++.++|-
T Consensus 241 ~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 241 PTLRELHLDNNK-LSRVPA------------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp TTCCEEECCSSC-CCBCCT------------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCEEECCCCc-CeecCh------------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 888888888863 444433 5677888888888884 455554321 1 156788888888774
Q ss_pred C--CCCCCCCCcc-cccceEEEehh
Q 036761 851 L--RKLPLDSNSA-KERKIVIRGYR 872 (897)
Q Consensus 851 L--~~lp~~~~~~-~~~~l~i~~c~ 872 (897)
. ...|...... .++.+++.+++
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 3 2222222222 23666666653
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=202.50 Aligned_cols=269 Identities=19% Similarity=0.215 Sum_probs=175.1
Q ss_pred EeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCC
Q 036761 524 RFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTA 602 (897)
Q Consensus 524 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 602 (897)
..+.+++.++.+|.. -.++|++|+++ ++.++.++...|.++++|++|+|++| .++.+ |..++++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccc-ccccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCc
Confidence 356667777777652 23578888888 66788888766888888999999888 66655 4568888889999998888
Q ss_pred ccccChh-hhcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 603 IRELPKE-LNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 603 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
++.+|.. ++++++|++|++++|.+ ..+|. ..+.++++|++|++++|.... ...+..+..+++|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~--------------~~~~~~~~~l~~L 176 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFT--------------KIQRKDFAGLTFL 176 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCC--------------EECTTTTTTCCEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccc--------------ccCHHHccCCCCC
Confidence 8888876 78888899999888874 66776 447888888888888874221 1134456777888
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEE
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKI 760 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 760 (897)
+.|++++|.+.... ...+..+++|++|++++|.. ..++. .....+++|+.|
T Consensus 177 ~~L~l~~n~l~~~~---------------------------~~~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~~~~L~~L 227 (353)
T 2z80_A 177 EELEIDASDLQSYE---------------------------PKSLKSIQNVSHLILHMKQH-ILLLE-IFVDVTSSVECL 227 (353)
T ss_dssp EEEEEEETTCCEEC---------------------------TTTTTTCSEEEEEEEECSCS-TTHHH-HHHHHTTTEEEE
T ss_pred CEEECCCCCcCccC---------------------------HHHHhccccCCeecCCCCcc-ccchh-hhhhhcccccEE
Confidence 88888877664321 12344455666666665532 22211 112235666666
Q ss_pred EEeCCCCCCCCc-----ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCC-
Q 036761 761 QIYGCHRLKDLT-----FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRP- 834 (897)
Q Consensus 761 ~L~~c~~l~~l~-----~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~- 834 (897)
++++| .++.++ .....+.++.++++++..-..-. ..++..+..+++|+.|++++| .++.++...
T Consensus 228 ~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l--------~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~ 297 (353)
T 2z80_A 228 ELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--------FQVMKLLNQISGLLELEFSRN-QLKSVPDGIF 297 (353)
T ss_dssp EEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHH--------HHHHHHHHTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ECCCC-ccccccccccccccccchhhccccccccccCcch--------hhhHHHHhcccCCCEEECCCC-CCCccCHHHH
Confidence 66666 333322 12235667777777653221100 011224566788888888875 566777654
Q ss_pred CCCCCcceeeecCCc
Q 036761 835 LPFPCLRDLTVNSCD 849 (897)
Q Consensus 835 ~~l~~L~~L~i~~C~ 849 (897)
..+++|++|++++|+
T Consensus 298 ~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 298 DRLTSLQKIWLHTNP 312 (353)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCCCCCEEEeeCCC
Confidence 567888888888875
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=204.21 Aligned_cols=264 Identities=18% Similarity=0.211 Sum_probs=189.7
Q ss_pred EEEEcCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCC
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARR 579 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~ 579 (897)
.+...+..+...|.. -..++++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|+|++| .
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCC-c
Confidence 344445556665542 23589999999999998875 7899999999999 67888888777999999999999999 7
Q ss_pred CcccCcc-ccCccCCCEeeccCCCccccCh--hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCC
Q 036761 580 MSSFPLG-ISVLVSLQHLDLSGTAIRELPK--ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNG 656 (897)
Q Consensus 580 ~~~lp~~-i~~L~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 656 (897)
++.+|.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|....
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 8888866 8999999999999999999987 689999999999999965677766669999999999999987542
Q ss_pred CCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccc---cccccCCCCc
Q 036761 657 KKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVS---ALAGLKHLNR 733 (897)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~---~l~~l~~L~~ 733 (897)
..+..+..+++|+.|++++|.+..++... ....++|+.|++++|.... .... .....+.++.
T Consensus 189 ------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 189 ------------YEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKK 253 (353)
T ss_dssp ------------ECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTT-CCCC------CCCCCCE
T ss_pred ------------cCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccc-ccccccccccccchhhc
Confidence 14667888999999999999987766432 2234578888888775322 1111 1222344555
Q ss_pred eeeeecCCcc----EEEecccCcCCCCccEEEEeCCCCCCCCcc--cccCCCccEEEEecCc
Q 036761 734 LWIHECEELE----ELEMARQPFDFRSLKKIQIYGCHRLKDLTF--LLFAPNLKSIEVSSCF 789 (897)
Q Consensus 734 L~l~~~~~l~----~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 789 (897)
+++.++.... .+ +.+ ...+++|+.|+|++| .++.+|. +..+++|++|++++|+
T Consensus 254 l~L~~~~l~~~~l~~l-~~~-l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 254 FTFRNVKITDESLFQV-MKL-LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEEESCBCCHHHHHHH-HHH-HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccccccCcchhhh-HHH-HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 5555442111 01 011 234566666666666 4445542 3456666666666653
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.4e-20 Score=219.16 Aligned_cols=142 Identities=23% Similarity=0.251 Sum_probs=114.5
Q ss_pred cCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+.++..+|.. -..++++|++++|.++.++ .|.++++|++|+|+ ++.++.++++.|.++++|++|+|++| .++.+
T Consensus 39 ~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSL 115 (635)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred CCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCC-cCCCC
Confidence 34455555531 1247899999999999887 47889999999999 77888998888999999999999999 78877
Q ss_pred Cc-cccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccCC
Q 036761 584 PL-GISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 584 p~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
|. .|.++.+|++|+|++|+++.+|.. |+++++|++|++++|.+.. .+|.. ++.+++|++|+++++..
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccc
Confidence 75 578999999999999999988764 8899999999999997533 34543 78899999998887654
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=8.9e-20 Score=211.19 Aligned_cols=112 Identities=20% Similarity=0.251 Sum_probs=53.3
Q ss_pred ccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeecc
Q 036761 520 ENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLS 599 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 599 (897)
++++.|++++|.+..+|. .+++|++|+++ +|.++.+|. .+++|++|+|++| .++.+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLPV----LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCSCCCC----CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcC-CCcCCcCCC----CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 345555555555554444 34455555555 334444443 3455555555555 4444443 34455555555
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+|+++.+|.. +++|++|++++|.+ ..+|. .+++|+.|++++|.
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQ 172 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSC
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCC
Confidence 5555555442 24555555555542 33332 12445555555444
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3.3e-20 Score=198.30 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=146.7
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc---CccccCccCCCEeecc
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF---PLGISVLVSLQHLDLS 599 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l---p~~i~~L~~L~~L~L~ 599 (897)
+.++..++.+..+|.. -.++|++|+++ ++.+..+|..+|.++++|++|+|++| .++.+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~-~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCC-CCCCCCEEECC-CCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 3566666677776642 23678888888 66788888877888888888888888 55544 5666778888888888
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLE 678 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 678 (897)
+|.++.+|..+..+++|++|++++|.+ ..++. ..+..+++|++|+++++..... .+..+..++
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~ 150 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVA---------------FNGIFNGLS 150 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEEC---------------STTTTTTCT
T ss_pred CCccccChhhcCCCCCCCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCcc---------------chhhcccCc
Confidence 888888888888888888888888875 44543 3477888888888887764321 344466777
Q ss_pred CCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCcc
Q 036761 679 HLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLK 758 (897)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 758 (897)
+|+.|++++|.+... .....+..+++|++|++++|. ++.+.+.. +..+++|+
T Consensus 151 ~L~~L~l~~n~l~~~--------------------------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~ 202 (306)
T 2z66_A 151 SLEVLKMAGNSFQEN--------------------------FLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQ 202 (306)
T ss_dssp TCCEEECTTCEEGGG--------------------------EECSCCTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCC
T ss_pred CCCEEECCCCccccc--------------------------cchhHHhhCcCCCEEECCCCC-cCCcCHHH-hcCCCCCC
Confidence 788887777665320 001234556677777777663 34333322 44566777
Q ss_pred EEEEeCCCCCCCCc--ccccCCCccEEEEecCc
Q 036761 759 KIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCF 789 (897)
Q Consensus 759 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 789 (897)
.|+|++| .++.++ .+..+++|+.|++++|.
T Consensus 203 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 203 VLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EEECCCC-ccCccChhhccCcccCCEeECCCCC
Confidence 7777776 344433 34556666666666653
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=9.6e-21 Score=203.22 Aligned_cols=261 Identities=15% Similarity=0.117 Sum_probs=150.3
Q ss_pred eEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 523 RRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 523 r~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
...+++.+.+...+. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++..+. +..+++|++|++++
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcC
Confidence 334444444433221 2456678888888 66677777666788888888888888 5665553 77888888888888
Q ss_pred CCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 601 TAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 601 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
|.++.+| .+++|++|++++|.+ ..++. ..+++|++|++++|..... .+..+..+++|
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l-~~~~~---~~~~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L 146 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNI-SRVSC---SRGQGKKNIYLANNKITML---------------RDLDEGCRSRV 146 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCC-SEEEE---CCCSSCEEEECCSSCCCSG---------------GGBCTGGGSSE
T ss_pred Ccccccc----CCCCcCEEECCCCcc-CCcCc---cccCCCCEEECCCCCCCCc---------------cchhhhccCCC
Confidence 8877766 337888888888874 44543 2467788888877764421 23345566777
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccc-cccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSAL-AGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
+.|++++|.+.... ...+ ..+++|++|++++|. ++.++. ...+++|+.
T Consensus 147 ~~L~Ls~N~l~~~~---------------------------~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~~l~~L~~ 195 (317)
T 3o53_A 147 QYLDLKLNEIDTVN---------------------------FAELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKT 195 (317)
T ss_dssp EEEECTTSCCCEEE---------------------------GGGGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCE
T ss_pred CEEECCCCCCCccc---------------------------HHHHhhccCcCCEEECCCCc-Cccccc---ccccccCCE
Confidence 77777777654421 1111 234555555555553 333321 123555666
Q ss_pred EEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeeccccccc-ccccCCCCCC
Q 036761 760 IQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVL-KSIYKRPLPF 837 (897)
Q Consensus 760 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~l 837 (897)
|+|++| .++.++ .+..+++|+.|++++| .++.++. .+..+++|+.|++++++.. ..++.....+
T Consensus 196 L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 196 LDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp EECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred EECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 666655 333332 3445566666666654 2223222 3445556666666654433 2333333445
Q ss_pred CCcceeeecCCccCCCC
Q 036761 838 PCLRDLTVNSCDELRKL 854 (897)
Q Consensus 838 ~~L~~L~i~~C~~L~~l 854 (897)
++|+.|++.+|+.++..
T Consensus 262 ~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred ccceEEECCCchhccCC
Confidence 55666666555555443
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.5e-19 Score=200.23 Aligned_cols=116 Identities=20% Similarity=0.267 Sum_probs=62.1
Q ss_pred ccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeecc
Q 036761 520 ENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLS 599 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~ 599 (897)
.+++.|++++|.+..++... ++|++|+++ ++.++.+|. |+++++|++|++++| .++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~-~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVS-NNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECC-SSCCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECc-CCCCCCCcc--cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECc
Confidence 45556666665555544332 456666665 444555552 556666666666666 455555332 355666666
Q ss_pred CCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 600 GTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 600 ~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+|.++.+| .++++++|++|++++|.+ ..+|.. .++|++|++++|.
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~----~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL----PLSLESIVAGNNI 226 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC----CTTCCEEECCSSC
T ss_pred CCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC----cCcccEEECcCCc
Confidence 66555555 455566666666665553 334431 1355555555554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=2.1e-19 Score=203.18 Aligned_cols=240 Identities=19% Similarity=0.237 Sum_probs=130.5
Q ss_pred EeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCC
Q 036761 524 RFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTA 602 (897)
Q Consensus 524 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~ 602 (897)
.++..+..+..+|.. -.+++++|+|+ ++.+..+++..|.++++|++|+|++| .++.+ |..+.++++|++|+|++|.
T Consensus 58 ~v~c~~~~l~~iP~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSEVPQG-IPSNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCccCCC-CCCCccEEECc-CCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc
Confidence 334444444444421 12455555555 44455554444555555555555555 33333 2445555555555555555
Q ss_pred ccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCC
Q 036761 603 IRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLE 681 (897)
Q Consensus 603 i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 681 (897)
++.+|.. +..+++|++|++++|.+ ..+|...+.++++|++|+++++.... ......+..+++|+
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNLK 199 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTCC
T ss_pred CCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCCC
Confidence 5555443 45555555555555542 44444445555555555555533221 00122344555555
Q ss_pred EEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEE
Q 036761 682 VLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQ 761 (897)
Q Consensus 682 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 761 (897)
.|++++|.+..++. ...+.+|+.|+|++|.. ..+....+..+++|+.|++++|. +..+.+.. +..+++|+.|+
T Consensus 200 ~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~ 272 (452)
T 3zyi_A 200 YLNLGMCNIKDMPN----LTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELN 272 (452)
T ss_dssp EEECTTSCCSSCCC----CTTCTTCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEE
T ss_pred EEECCCCccccccc----ccccccccEEECcCCcC-cccCcccccCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEE
Confidence 55555555544321 22233555555555542 22323457778888888888774 44443333 56788899999
Q ss_pred EeCCCCCCCCc--ccccCCCccEEEEecCc
Q 036761 762 IYGCHRLKDLT--FLLFAPNLKSIEVSSCF 789 (897)
Q Consensus 762 L~~c~~l~~l~--~l~~l~~L~~L~L~~c~ 789 (897)
|++| .++.++ .+..+++|+.|+|++|+
T Consensus 273 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 273 LAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 9888 666665 35678889999988864
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=202.36 Aligned_cols=240 Identities=20% Similarity=0.272 Sum_probs=127.3
Q ss_pred EeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCC
Q 036761 524 RFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTA 602 (897)
Q Consensus 524 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 602 (897)
.++..++.+..+|.. -.++++.|+|+ ++.+..++...|.++++|++|+|++| .++.++ ..+.++++|++|+|++|+
T Consensus 47 ~v~c~~~~l~~iP~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLREVPDG-ISTNTRLLNLH-ENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSSCCSC-CCTTCSEEECC-SCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCC-CCCCCcEEEcc-CCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc
Confidence 334444444444421 12445555555 44444444444555555555555555 333332 344555555555555555
Q ss_pred ccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCC
Q 036761 603 IRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLE 681 (897)
Q Consensus 603 i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 681 (897)
++.+|. .+..+++|++|++++|.+ ..+|...+.++++|++|+++++.... ......+.++++|+
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLS--------------YISEGAFEGLSNLR 188 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCSSCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcc--------------eeCcchhhcccccC
Confidence 555544 245555555555555542 34444345555555555555433211 00122344455555
Q ss_pred EEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEE
Q 036761 682 VLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQ 761 (897)
Q Consensus 682 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 761 (897)
.|++++|.+..++. ....++|+.|+|++|. ...+....+..+++|+.|++++|. ++.+.+.. +..+++|+.|+
T Consensus 189 ~L~L~~n~l~~~~~----~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~ 261 (440)
T 3zyj_A 189 YLNLAMCNLREIPN----LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEIN 261 (440)
T ss_dssp EEECTTSCCSSCCC----CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEE
T ss_pred eecCCCCcCccccc----cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEE
Confidence 55555555443321 1223345555555553 222333467778889999998774 45444333 56788899999
Q ss_pred EeCCCCCCCCcc--cccCCCccEEEEecCc
Q 036761 762 IYGCHRLKDLTF--LLFAPNLKSIEVSSCF 789 (897)
Q Consensus 762 L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 789 (897)
|++| .++.++. +..+++|+.|+|++|+
T Consensus 262 L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 262 LAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 9988 6666653 5678899999988865
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=2.4e-19 Score=189.39 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=167.5
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 601 (897)
+.++..++.+..+|. ...++|++|+++ ++.+..++...|..+++|++|+|++| .++.+ |..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~-~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEee-CCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 566677777777764 235789999999 77788888777899999999999999 66655 778899999999999999
Q ss_pred C-cccc-ChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 602 A-IREL-PKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 602 ~-i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
. ++.+ |..+..+++|++|++++|.+ ..++...+.++++|++|+++++..... ....+..+++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~ 154 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQAL---------------PDDTFRDLGN 154 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcC-CEECHhHhhCCcCCCEEECCCCccccc---------------CHhHhccCCC
Confidence 6 8877 66788999999999999985 555555588899999999998775432 2344677888
Q ss_pred CCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 680 LEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
|+.|++++|.+..+ +...+..+++|+.|++++|. +..+.+.. +..+++|+.
T Consensus 155 L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~ 205 (285)
T 1ozn_A 155 LTHLFLHGNRISSV---------------------------PERAFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMT 205 (285)
T ss_dssp CCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCE
T ss_pred ccEEECCCCccccc---------------------------CHHHhcCccccCEEECCCCc-ccccCHhH-ccCcccccE
Confidence 88888888765432 11246667889999998885 44443333 567889999
Q ss_pred EEEeCCCCCCCCc--ccccCCCccEEEEecCch
Q 036761 760 IQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFA 790 (897)
Q Consensus 760 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~ 790 (897)
|+|++| .++.++ .+..+++|+.|++++|+.
T Consensus 206 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 206 LYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred eeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 999998 566665 377899999999998754
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=6.5e-19 Score=198.03 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=123.5
Q ss_pred EEEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS 582 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~ 582 (897)
+...+.++...+.. ..+++.|++++|.+..+|.. +++|++|+++ ++.+..++.. .++|++|++++| .++.
T Consensus 76 L~l~~~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~-~n~l~~l~~~----~~~L~~L~L~~n-~l~~ 145 (454)
T 1jl5_A 76 LELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVD-NNNLKALSDL----PPLLEYLGVSNN-QLEK 145 (454)
T ss_dssp EECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECC-SSCCSCCCSC----CTTCCEEECCSS-CCSS
T ss_pred EEecCCccccCCCC--cCCCCEEEccCCcCCccccc--cCCCcEEECC-CCccCcccCC----CCCCCEEECcCC-CCCC
Confidence 33334444443332 25778888888877777643 4678888887 5566665531 267888888888 6667
Q ss_pred cCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC----
Q 036761 583 FPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK---- 658 (897)
Q Consensus 583 lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~---- 658 (897)
+| .++++++|++|++++|+++.+|..+ .+|++|++++|.+ ..+|. ++++++|++|++++|....+....
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l-~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~ 218 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQL-EELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLE 218 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCC-SSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcC-CcCcc--ccCCCCCCEEECCCCcCCcCCCCcCccc
Confidence 77 5788888888888888887777543 4788888888864 55663 778888888888777654422110
Q ss_pred ---CCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCcee
Q 036761 659 ---NDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLW 735 (897)
Q Consensus 659 ---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~ 735 (897)
...+.+. ..+ .+..+++|+.|++++|.+..++. ..++|+.|++++|.... ++. .+++|+.|+
T Consensus 219 ~L~l~~n~l~---~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ 283 (454)
T 1jl5_A 219 SIVAGNNILE---ELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPE----LPQSLTFLD 283 (454)
T ss_dssp EEECCSSCCS---SCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCC----CCTTCCEEE
T ss_pred EEECcCCcCC---ccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCc----ccCcCCEEE
Confidence 0011111 122 35666677777777766654332 12466666666654221 110 124566666
Q ss_pred eeec
Q 036761 736 IHEC 739 (897)
Q Consensus 736 l~~~ 739 (897)
+++|
T Consensus 284 ls~N 287 (454)
T 1jl5_A 284 VSEN 287 (454)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 6555
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=8.9e-19 Score=207.89 Aligned_cols=334 Identities=16% Similarity=0.136 Sum_probs=221.5
Q ss_pred cccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCcc
Q 036761 515 NVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLV 591 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~ 591 (897)
.+..++++++|++++|.+..++. +.++++|++|+|+ +|.++.+|+..|.++++|++|+|++| .++.+|. .|++++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCc
Confidence 45677899999999999999864 7889999999999 77899999988999999999999999 7777765 589999
Q ss_pred CCCEeeccCCCccc--cChhhhcCCcCcEecCCCCccccccChhhhhcCCccc----eeeccccCCCCC-----------
Q 036761 592 SLQHLDLSGTAIRE--LPKELNALENLQCLNLEETHFLITIPRQLISSFSSLI----VLRMFGVGDWSP----------- 654 (897)
Q Consensus 592 ~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~----~L~l~~~~~~~~----------- 654 (897)
+|++|++++|.++. +|..++.+++|++|++++|.+ ..++.+.+..+.+++ .++++.+.....
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 99999999999984 578899999999999999975 444332233332221 111111100000
Q ss_pred ----------------------------------------C---CCCCC-------------------------C-----
Q 036761 655 ----------------------------------------N---GKKND-------------------------S----- 661 (897)
Q Consensus 655 ----------------------------------------~---~~~~~-------------------------~----- 661 (897)
. ..... .
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 0 00000 0
Q ss_pred ------------------------------ccccC-----------------ccchhHHhcCCCCCCEEEEEeCCc----
Q 036761 662 ------------------------------DLFSG-----------------GDLLVEALRGLEHLEVLSLTLNNF---- 690 (897)
Q Consensus 662 ------------------------------~~~~~-----------------~~~~~~~l~~l~~L~~L~l~~~~~---- 690 (897)
+.+.. ..........+++|+.|+++.|.+
T Consensus 308 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 387 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 387 (635)
T ss_dssp CSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEE
T ss_pred cccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccc
Confidence 00000 000001112356666666655432
Q ss_pred ----------------------ccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEec
Q 036761 691 ----------------------QDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMA 748 (897)
Q Consensus 691 ----------------------~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 748 (897)
.... ........|+.+.+..+......+...+..+++|+.++++.|. +... ..
T Consensus 388 ~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~-~~ 462 (635)
T 4g8a_A 388 CCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FN 462 (635)
T ss_dssp ECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEEC-CT
T ss_pred ccccchhhhhhhhhhhcccccccccc---ccccccccccchhhhhccccccccccccccccccccccccccc-cccc-cc
Confidence 2111 1122345788888877654444444467778899999998774 3332 23
Q ss_pred ccCcCCCCccEEEEeCCCCCCCC-c-ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccc
Q 036761 749 RQPFDFRSLKKIQIYGCHRLKDL-T-FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTV 826 (897)
Q Consensus 749 ~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 826 (897)
.....+++|+.|+|++|.....+ | .+..+++|++|+|++| .++.+++ ..+..+++|+.|+|+++ .
T Consensus 463 ~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-----------~~f~~l~~L~~L~Ls~N-~ 529 (635)
T 4g8a_A 463 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-----------TAFNSLSSLQVLNMSHN-N 529 (635)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-----------TTTTTCTTCCEEECTTS-C
T ss_pred cccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-----------HHHcCCCCCCEEECCCC-c
Confidence 33567889999999998544432 2 4678899999999997 4554433 25778899999999985 5
Q ss_pred cccccC-CCCCCCCcceeeecCCccCCCCCCC-CCc--ccccceEEEe
Q 036761 827 LKSIYK-RPLPFPCLRDLTVNSCDELRKLPLD-SNS--AKERKIVIRG 870 (897)
Q Consensus 827 l~~~~~-~~~~l~~L~~L~i~~C~~L~~lp~~-~~~--~~~~~l~i~~ 870 (897)
++.++. .+..+++|+.|+++++ +++.+|.. ... .+++.+++++
T Consensus 530 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 530 FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 666554 4567899999999985 56666543 322 2457788864
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=9.2e-19 Score=197.89 Aligned_cols=237 Identities=23% Similarity=0.252 Sum_probs=192.4
Q ss_pred EcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc
Q 036761 505 YTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS 582 (897)
Q Consensus 505 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~ 582 (897)
..+.++..+|.. -..+++.|++++|.+..++ .+..+++|++|+|+ ++.+..+++..|.++++|++|+|++| .++.
T Consensus 61 c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~ 137 (452)
T 3zyi_A 61 CTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RNSIRQIEVGAFNGLASLNTLELFDN-WLTV 137 (452)
T ss_dssp CCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCSB
T ss_pred ECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECC-CCccCCcChhhccCcccCCEEECCCC-cCCc
Confidence 334445555431 2358999999999998874 47899999999999 77888898888999999999999999 7777
Q ss_pred cCcc-ccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCC
Q 036761 583 FPLG-ISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKND 660 (897)
Q Consensus 583 lp~~-i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 660 (897)
+|.. +.++++|++|+|++|.++.+|. .+.++++|++|++++|..+..+|.+.+.++++|++|++++|.....
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------ 211 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------ 211 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------
Confidence 7654 8899999999999999999886 5889999999999998888899988799999999999999875431
Q ss_pred CccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecC
Q 036761 661 SDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECE 740 (897)
Q Consensus 661 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 740 (897)
..+..+++|+.|++++|.+..+.. .....+++|+.|++++|.. ..+....+..+++|+.|++++|.
T Consensus 212 -----------~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 212 -----------PNLTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp -----------CCCTTCTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSC
T ss_pred -----------ccccccccccEEECcCCcCcccCc--ccccCccCCCEEEeCCCcC-ceECHHHhcCCCCCCEEECCCCc
Confidence 247788999999999999876532 2234456899999999874 34444568889999999999884
Q ss_pred CccEEEecccCcCCCCccEEEEeCCC
Q 036761 741 ELEELEMARQPFDFRSLKKIQIYGCH 766 (897)
Q Consensus 741 ~l~~l~~~~~~~~l~~L~~L~L~~c~ 766 (897)
++.++.. .+..+++|+.|+|++|+
T Consensus 278 -l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 278 -LSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -CSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred -CCccChH-HhccccCCCEEEccCCC
Confidence 5554433 35678999999999985
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=196.98 Aligned_cols=236 Identities=22% Similarity=0.247 Sum_probs=193.0
Q ss_pred cCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+.++..+|.. -..+++.|++++|.+..++ .+..+++|++|+|+ ++.+..++...|.++++|++|+|++| .++.+
T Consensus 51 ~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~ 127 (440)
T 3zyj_A 51 VRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN-RLTTI 127 (440)
T ss_dssp CSCCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEECCSS-CCSSC
T ss_pred CCCCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEECCCC-cCCee
Confidence 44455555532 2358999999999998875 47899999999999 77888999888999999999999999 78887
Q ss_pred Cc-cccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCC
Q 036761 584 PL-GISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDS 661 (897)
Q Consensus 584 p~-~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 661 (897)
|. .+..+++|++|+|++|.|+.+|. .+.++++|++|++++|..+..++.+.+.++++|++|++++|....+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------- 200 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------- 200 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-------
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-------
Confidence 75 58999999999999999998876 6899999999999998878889887799999999999999875532
Q ss_pred ccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCC
Q 036761 662 DLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEE 741 (897)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 741 (897)
..+..+++|+.|++++|.+..+.. .....+++|+.|++++|.. ..+....+..+++|+.|++++|.
T Consensus 201 ----------~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~- 266 (440)
T 3zyj_A 201 ----------PNLTPLIKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNN- 266 (440)
T ss_dssp ----------CCCTTCSSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCC-CEECTTSSTTCTTCCEEECTTSC-
T ss_pred ----------cccCCCcccCEEECCCCccCccCh--hhhccCccCCEEECCCCce-eEEChhhhcCCCCCCEEECCCCC-
Confidence 247788999999999999876532 2334456899999999873 44444578889999999999884
Q ss_pred ccEEEecccCcCCCCccEEEEeCCC
Q 036761 742 LEELEMARQPFDFRSLKKIQIYGCH 766 (897)
Q Consensus 742 l~~l~~~~~~~~l~~L~~L~L~~c~ 766 (897)
++.++.. .+..+++|+.|+|++|+
T Consensus 267 l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 267 LTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred CCccChh-HhccccCCCEEEcCCCC
Confidence 5544433 35678999999999985
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.3e-18 Score=201.33 Aligned_cols=255 Identities=20% Similarity=0.209 Sum_probs=198.0
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
+++.|++++|.+..+|.... ++|++|+++ ++.++.+|. .+++|++|+|++| .++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~-~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIP-DNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEEC-SCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEec-CCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 57899999999998886332 899999999 777888886 5799999999999 7888986 789999999999
Q ss_pred CCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 601 TAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 601 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
|.++.+|. .+++|++|++++|. +..+|.. +++|++|++++|....+ + ..+++|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l----------------~---~~~~~L 163 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASL----------------P---ALPSEL 163 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCC----------------C---CCCTTC
T ss_pred CcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCc----------------C---CccCCC
Confidence 99999987 67899999999998 4778863 58999999999875432 1 134678
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEE
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKI 760 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 760 (897)
+.|++++|.+..++ ..+++|+.|++++|... .++ ..+++|+.|++++|. ++.++ ..+++|+.|
T Consensus 164 ~~L~L~~N~l~~l~------~~~~~L~~L~Ls~N~l~-~l~----~~~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L 226 (622)
T 3g06_A 164 CKLWAYNNQLTSLP------MLPSGLQELSVSDNQLA-SLP----TLPSELYKLWAYNNR-LTSLP-----ALPSGLKEL 226 (622)
T ss_dssp CEEECCSSCCSCCC------CCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSC-CSSCC-----CCCTTCCEE
T ss_pred CEEECCCCCCCCCc------ccCCCCcEEECCCCCCC-CCC----CccchhhEEECcCCc-ccccC-----CCCCCCCEE
Confidence 88889888887754 33468888998887632 222 124788888888774 44332 246789999
Q ss_pred EEeCCCCCCCCcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCc
Q 036761 761 QIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCL 840 (897)
Q Consensus 761 ~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L 840 (897)
+|++| .++.+| ..+++|+.|+|++| .++.++. .+++|+.|++++| .++.+|..+..+++|
T Consensus 227 ~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~---------------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L 286 (622)
T 3g06_A 227 IVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM---------------LPSGLLSLSVYRN-QLTRLPESLIHLSSE 286 (622)
T ss_dssp ECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSS-CCCSCCGGGGGSCTT
T ss_pred EccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc---------------ccccCcEEeCCCC-CCCcCCHHHhhcccc
Confidence 99888 677776 56788999999886 3443311 5678899999885 566888777888899
Q ss_pred ceeeecCCc
Q 036761 841 RDLTVNSCD 849 (897)
Q Consensus 841 ~~L~i~~C~ 849 (897)
+.|++++|+
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 999998875
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.2e-20 Score=199.10 Aligned_cols=264 Identities=15% Similarity=0.076 Sum_probs=194.5
Q ss_pred cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCCccccChhhhcCCcCcEecC
Q 036761 543 HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNL 621 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 621 (897)
.++.++++ .+.+...+...+..+++|++|+|++| .++.++ ..++.+++|++|++++|.++.++. +..+++|++|++
T Consensus 11 ~l~i~~ls-~~~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVT-DSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCC-TTTHHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeecc-ccchhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 35556666 55666777777888899999999999 666654 678999999999999999987765 899999999999
Q ss_pred CCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchh
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKE 701 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 701 (897)
++|.+ ..+| .+++|++|++++|..... . ...+++|+.|++++|.+..+
T Consensus 88 s~n~l-~~l~-----~~~~L~~L~l~~n~l~~~---------------~---~~~~~~L~~L~l~~N~l~~~-------- 135 (317)
T 3o53_A 88 NNNYV-QELL-----VGPSIETLHAANNNISRV---------------S---CSRGQGKKNIYLANNKITML-------- 135 (317)
T ss_dssp CSSEE-EEEE-----ECTTCCEEECCSSCCSEE---------------E---ECCCSSCEEEECCSSCCCSG--------
T ss_pred cCCcc-cccc-----CCCCcCEEECCCCccCCc---------------C---ccccCCCCEEECCCCCCCCc--------
Confidence 99974 5444 348899999988764321 1 12356677777777765432
Q ss_pred ccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCcc
Q 036761 702 LRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLK 781 (897)
Q Consensus 702 ~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~ 781 (897)
....+..+++|+.|++++|. +..+.+......+++|+.|+|++| .++.++....+++|+
T Consensus 136 -------------------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~ 194 (317)
T 3o53_A 136 -------------------RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLK 194 (317)
T ss_dssp -------------------GGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCC
T ss_pred -------------------cchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCC
Confidence 11245678899999999884 555555543456899999999999 677777677799999
Q ss_pred EEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCCCcceeeecCCccC-CCCCCCCCc
Q 036761 782 SIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDEL-RKLPLDSNS 860 (897)
Q Consensus 782 ~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~C~~L-~~lp~~~~~ 860 (897)
+|++++|. ++.++. .+..+++|+.|+++++ .++.++..+..+++|+.|++++|+-. ..+|.....
T Consensus 195 ~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 195 TLDLSSNK-LAFMGP------------EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEECCSSC-CCEECG------------GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred EEECCCCc-CCcchh------------hhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 99999973 444433 4677899999999996 67788888888999999999997644 233332221
Q ss_pred -ccccceEEEehhhhhc
Q 036761 861 -AKERKIVIRGYRKWWE 876 (897)
Q Consensus 861 -~~~~~l~i~~c~~~~~ 876 (897)
..++.+++.++..+..
T Consensus 261 ~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 261 NQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred cccceEEECCCchhccC
Confidence 2236666666655443
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=4.8e-19 Score=189.21 Aligned_cols=243 Identities=17% Similarity=0.157 Sum_probs=183.3
Q ss_pred eeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccCCCcccc---ChhhhcCCcCcEec
Q 036761 545 LTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSGTAIREL---PKELNALENLQCLN 620 (897)
Q Consensus 545 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~ 620 (897)
+.++.+ .+.++.+|..+ .++|++|+|++| .++.+|.. +.++++|++|++++|.++.+ |..+..+++|++|+
T Consensus 10 ~~l~c~-~~~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCN-SKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECC-SSCCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcC-CCCcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 456666 66788888753 368999999999 78888865 68999999999999998865 67788899999999
Q ss_pred CCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhch
Q 036761 621 LEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSK 700 (897)
Q Consensus 621 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 700 (897)
+++|.+ ..+|.. +..+++|++|+++++..... .....+..+++|+.|++++|.+...
T Consensus 85 Ls~n~i-~~l~~~-~~~l~~L~~L~l~~n~l~~~--------------~~~~~~~~l~~L~~L~l~~n~l~~~------- 141 (306)
T 2z66_A 85 LSFNGV-ITMSSN-FLGLEQLEHLDFQHSNLKQM--------------SEFSVFLSLRNLIYLDISHTHTRVA------- 141 (306)
T ss_dssp CCSCSE-EEEEEE-EETCTTCCEEECTTSEEESS--------------TTTTTTTTCTTCCEEECTTSCCEEC-------
T ss_pred CCCCcc-ccChhh-cCCCCCCCEEECCCCccccc--------------ccchhhhhccCCCEEECCCCcCCcc-------
Confidence 999985 677776 88899999999998764321 0124577788888888887765421
Q ss_pred hccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCC-c-ccccCC
Q 036761 701 ELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDL-T-FLLFAP 778 (897)
Q Consensus 701 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~ 778 (897)
....+..+++|++|++++|.......+.. +..+++|++|+|++| .++.+ + .+..++
T Consensus 142 --------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 142 --------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQC-QLEQLSPTAFNSLS 199 (306)
T ss_dssp --------------------STTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred --------------------chhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCC-CcCCcCHHHhcCCC
Confidence 11246678899999999885443223333 667899999999999 56554 2 577899
Q ss_pred CccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCCCCC-CcceeeecCCc
Q 036761 779 NLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFP-CLRDLTVNSCD 849 (897)
Q Consensus 779 ~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~i~~C~ 849 (897)
+|+.|++++|. +..++. ..+..+++|+.|+++++......+..+..+| +|+.|++++++
T Consensus 200 ~L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 200 SLQVLNMSHNN-FFSLDT-----------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTSC-CSBCCS-----------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCEEECCCCc-cCccCh-----------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999974 333322 1456789999999999766555666667775 89999999875
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=2.9e-19 Score=191.22 Aligned_cols=244 Identities=16% Similarity=0.118 Sum_probs=154.9
Q ss_pred cccceEeeccccccccccc-ccCCccceeeehhccccccc--cchhhhc-------CCCcccEEEccCCCCCc-ccCccc
Q 036761 519 WENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEM--ITSDFFK-------SMPRLKVLNLSGARRMS-SFPLGI 587 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~--l~~~~~~-------~l~~L~~L~Ls~~~~~~-~lp~~i 587 (897)
..+++.+.+.+|.+ .+|. +.. .|++|+++ .+.+.. ++.. +. ++++|++|+|++| .++ .+|..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~-~n~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLK-RLTVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHH--HHHHCCCC-EEEEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCS
T ss_pred CCCceeEeeccccc-ccHHHHHH--HHhhcccc-cccccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHH
Confidence 34677788888887 5553 232 38899998 555543 4443 33 6899999999999 554 688876
Q ss_pred --cCccCCCEeeccCCCccccChhhhcC-----CcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCC
Q 036761 588 --SVLVSLQHLDLSGTAIRELPKELNAL-----ENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKND 660 (897)
Q Consensus 588 --~~L~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 660 (897)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|.+ ..++...++++++|++|++++|....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~------- 187 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG------- 187 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCH-------
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCc-------
Confidence 89999999999999999888888877 8999999999985 66664458999999999999876321
Q ss_pred CccccCccchhHHh--cCCCCCCEEEEEeCCcccHHHHHhc-hhccccceeEEEeccCCCcccccccccccCCCCceeee
Q 036761 661 SDLFSGGDLLVEAL--RGLEHLEVLSLTLNNFQDLQCVLKS-KELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIH 737 (897)
Q Consensus 661 ~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~ 737 (897)
....+..+ ..+++|+.|++++|.+..++..... ...+++|+.|++++|......+...+..+++|++|+++
T Consensus 188 ------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 188 ------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp ------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred ------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 11134445 7889999999999988765443221 11233555555555543222222233334555555555
Q ss_pred ecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecC
Q 036761 738 ECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSC 788 (897)
Q Consensus 738 ~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 788 (897)
+|. ++.++ .. . +++|++|+|++| .++.+|.+..+++|++|++++|
T Consensus 262 ~N~-l~~ip-~~-~--~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 262 FTG-LKQVP-KG-L--PAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp TSC-CSSCC-SS-C--CSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTC
T ss_pred CCc-cChhh-hh-c--cCCceEEECCCC-CCCCChhHhhCCCCCEEeccCC
Confidence 442 22221 11 1 145555555555 3444444444555555555443
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=5.6e-19 Score=200.64 Aligned_cols=217 Identities=15% Similarity=0.090 Sum_probs=128.3
Q ss_pred cCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcE
Q 036761 539 PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQC 618 (897)
Q Consensus 539 ~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 618 (897)
..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++..+. ++.+++|++|+|++|.|+.+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECC-SSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred ccCCCccEEEee-CCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 345678888888 66677777666888888888888888 5665553 7888888888888888887763 378888
Q ss_pred ecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHh
Q 036761 619 LNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLK 698 (897)
Q Consensus 619 L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 698 (897)
|++++|.+ ..+|. ..+++|++|++++|..... .+..+..+++|+.|++++|.+.......
T Consensus 104 L~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 163 (487)
T 3oja_A 104 LHAANNNI-SRVSC---SRGQGKKNIYLANNKITML---------------RDLDEGCRSRVQYLDLKLNEIDTVNFAE- 163 (487)
T ss_dssp EECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSG---------------GGBCGGGGSSEEEEECTTSCCCEEEGGG-
T ss_pred EECcCCcC-CCCCc---cccCCCCEEECCCCCCCCC---------------CchhhcCCCCCCEEECCCCCCCCcChHH-
Confidence 88888874 44543 3467888888888765431 3445667788888888887765421100
Q ss_pred chhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccccC
Q 036761 699 SKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLLFA 777 (897)
Q Consensus 699 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l 777 (897)
....+++|+.|+|++|.... . .....+++|+.|++++|. ++.+++. +..+++|+.|+|++| .+..+| .+..+
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~-~--~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l 236 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYD-V--KGQVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFS 236 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCE-E--ECCCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred HhhhCCcccEEecCCCcccc-c--cccccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCC-cCcccchhhccC
Confidence 00012344444444443211 1 112234555555555442 3333222 334555555555555 333333 23445
Q ss_pred CCccEEEEecCc
Q 036761 778 PNLKSIEVSSCF 789 (897)
Q Consensus 778 ~~L~~L~L~~c~ 789 (897)
++|+.|++++|+
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 555555555543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=1.6e-18 Score=183.10 Aligned_cols=214 Identities=25% Similarity=0.333 Sum_probs=168.8
Q ss_pred cCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+.++..+|. ....++++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|+|++|..++.+
T Consensus 19 ~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 19 PQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCCccCCCEEeCCCCCCcccc
Confidence 4444555543 234689999999999998873 7889999999999 67788887777999999999999999547776
Q ss_pred -CccccCccCCCEeeccCCCcccc-ChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCC
Q 036761 584 -PLGISVLVSLQHLDLSGTAIREL-PKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDS 661 (897)
Q Consensus 584 -p~~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 661 (897)
|..+..+++|++|++++|.++.+ |..+.++++|++|++++|.+ ..+|...+..+++|++|+++++.....
T Consensus 97 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~------- 168 (285)
T 1ozn_A 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSV------- 168 (285)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEE-------
T ss_pred CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCccccc-------
Confidence 77899999999999999999987 55689999999999999985 677776689999999999999875421
Q ss_pred ccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCC
Q 036761 662 DLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEE 741 (897)
Q Consensus 662 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 741 (897)
....+..+++|+.|++++|.+... ....+..+++|+.|++++|.
T Consensus 169 --------~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~- 212 (285)
T 1ozn_A 169 --------PERAFRGLHSLDRLLLHQNRVAHV---------------------------HPHAFRDLGRLMTLYLFANN- 212 (285)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC-
T ss_pred --------CHHHhcCccccCEEECCCCccccc---------------------------CHhHccCcccccEeeCCCCc-
Confidence 233577889999999998876432 11245667889999998874
Q ss_pred ccEEEecccCcCCCCccEEEEeCCC
Q 036761 742 LEELEMARQPFDFRSLKKIQIYGCH 766 (897)
Q Consensus 742 l~~l~~~~~~~~l~~L~~L~L~~c~ 766 (897)
++.+++.. +..+++|+.|+|++|+
T Consensus 213 l~~~~~~~-~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 213 LSALPTEA-LAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred CCcCCHHH-cccCcccCEEeccCCC
Confidence 44333322 4568899999999885
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.7e-19 Score=202.09 Aligned_cols=237 Identities=17% Similarity=0.099 Sum_probs=179.2
Q ss_pred CCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccce
Q 036761 565 SMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIV 643 (897)
Q Consensus 565 ~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 643 (897)
.+++|++|+|++| .++.+ |..++.+++|++|+|++|.++.+++ ++.+++|++|+|++|.+ ..+|. .++|++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~~-----~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELLV-----GPSIET 103 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEEE-----CTTCCE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCCC-----CCCcCE
Confidence 4559999999999 66665 5689999999999999999997765 99999999999999974 55553 489999
Q ss_pred eeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccc
Q 036761 644 LRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVS 723 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 723 (897)
|++++|..... . ...+++|+.|++++|.+...... ....+++|+.|++++|......+ .
T Consensus 104 L~L~~N~l~~~---------------~---~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~ 162 (487)
T 3oja_A 104 LHAANNNISRV---------------S---CSRGQGKKNIYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNF-A 162 (487)
T ss_dssp EECCSSCCCCE---------------E---ECCCSSCEEEECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEG-G
T ss_pred EECcCCcCCCC---------------C---ccccCCCCEEECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcCh-H
Confidence 99999876431 1 12468899999999998875321 22345689999999987544333 3
Q ss_pred ccc-ccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCC-cccccCCCccEEEEecCchhhhhhcccccC
Q 036761 724 ALA-GLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDL-TFLLFAPNLKSIEVSSCFAMEEIISEAKFA 801 (897)
Q Consensus 724 ~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l-~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~ 801 (897)
.+. .+++|+.|++++|. ++.++. ...+++|+.|+|++| .++.+ +.+..+++|+.|+|++|. +..++.
T Consensus 163 ~l~~~l~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~----- 231 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNF-IYDVKG---QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK----- 231 (487)
T ss_dssp GGGGGTTTCCEEECTTSC-CCEEEC---CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT-----
T ss_pred HHhhhCCcccEEecCCCc-cccccc---cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccccch-----
Confidence 443 78999999999885 554433 335899999999999 56555 467789999999999964 444433
Q ss_pred CccccccCCCcccccceeeccccccc-ccccCCCCCCCCcceeeecCC
Q 036761 802 DVPEVMANLKPFAQLYSLRLGGLTVL-KSIYKRPLPFPCLRDLTVNSC 848 (897)
Q Consensus 802 ~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~i~~C 848 (897)
.+..+++|+.|++++++.. ..++.....+++|+.|.+..+
T Consensus 232 -------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 232 -------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp -------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 5677899999999997655 344445566788888887633
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=4.3e-18 Score=181.43 Aligned_cols=201 Identities=18% Similarity=0.285 Sum_probs=110.9
Q ss_pred cccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccCh
Q 036761 529 ETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPK 608 (897)
Q Consensus 529 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~ 608 (897)
.+.+........+++|++|+++ ++.+..++. +..+++|++|+|++| .++.+|. +..+++|++|++++|.++.+|
T Consensus 28 ~~~~~~~~~~~~l~~L~~L~l~-~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~- 101 (308)
T 1h6u_A 28 KSNVTDTVTQADLDGITTLSAF-GTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS- 101 (308)
T ss_dssp CSSTTSEECHHHHHTCCEEECT-TSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred CCCcCceecHHHcCCcCEEEee-CCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence 3333333334445566666666 444555542 555666666666666 5555554 666666666666666666654
Q ss_pred hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeC
Q 036761 609 ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLN 688 (897)
Q Consensus 609 ~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 688 (897)
.+..+++|++|++++|.+ ..+|. +..+++|++|++++|.... . ..+..+++|+.|++++|
T Consensus 102 ~~~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~----------------~-~~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQI-TDVTP--LAGLSNLQVLYLDLNQITN----------------I-SPLAGLTNLQYLSIGNA 161 (308)
T ss_dssp GGTTCTTCCEEECTTSCC-CCCGG--GTTCTTCCEEECCSSCCCC----------------C-GGGGGCTTCCEEECCSS
T ss_pred hhcCCCCCCEEECCCCCC-CCchh--hcCCCCCCEEECCCCccCc----------------C-ccccCCCCccEEEccCC
Confidence 456666666666666653 44443 5666666666666554321 1 11455555666655555
Q ss_pred CcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCC
Q 036761 689 NFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRL 768 (897)
Q Consensus 689 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l 768 (897)
.+..++ .+..+++|+.|++++|. ++.+++ ...+++|++|+|++| .+
T Consensus 162 ~l~~~~-----------------------------~l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N-~l 207 (308)
T 1h6u_A 162 QVSDLT-----------------------------PLANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNN-QI 207 (308)
T ss_dssp CCCCCG-----------------------------GGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTS-CC
T ss_pred cCCCCh-----------------------------hhcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCC-cc
Confidence 443211 13445566666666553 232221 345666777777666 45
Q ss_pred CCCcccccCCCccEEEEecCc
Q 036761 769 KDLTFLLFAPNLKSIEVSSCF 789 (897)
Q Consensus 769 ~~l~~l~~l~~L~~L~L~~c~ 789 (897)
+.++.+..+++|+.|++++|.
T Consensus 208 ~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 208 SDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CBCGGGTTCTTCCEEEEEEEE
T ss_pred CccccccCCCCCCEEEccCCe
Confidence 555556666777777777653
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=1.2e-18 Score=186.35 Aligned_cols=247 Identities=19% Similarity=0.160 Sum_probs=167.8
Q ss_pred ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc--ccCcccc-------CccCCCEeeccCCCcc-ccC
Q 036761 538 VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS--SFPLGIS-------VLVSLQHLDLSGTAIR-ELP 607 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~--~lp~~i~-------~L~~L~~L~L~~~~i~-~lp 607 (897)
....++|+.|+++ ++.+ .+|..+... |++|+|++| .++ .+|..+. ++.+|++|++++|.++ .+|
T Consensus 39 ~~~~~~L~~l~l~-~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 39 YGGGRSLEYLLKR-VDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEECTTHHHH-CCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EccCCCceeEeec-cccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3456789999999 5666 788764433 999999998 554 3666555 7899999999999998 688
Q ss_pred hhh--hcCCcCcEecCCCCccccccChhhhhcC-----CccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 608 KEL--NALENLQCLNLEETHFLITIPRQLISSF-----SSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 608 ~~i--~~L~~L~~L~L~~~~~l~~lp~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
..+ ..+++|++|++++|.+ ..+|.. ++.+ ++|++|++++|..... .+..++.+++|
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l-~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L 175 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSW-ATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF---------------SCEQVRVFPAL 175 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBC-SSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC---------------CTTTCCCCSSC
T ss_pred HHHHHhcCCCccEEEccCCCC-cchhHH-HHHHHHhhcCCCcEEEeeCCCCccc---------------hHHHhccCCCC
Confidence 876 8999999999999986 555754 7777 9999999999876542 44678889999
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEE--ecccCcCCCCcc
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELE--MARQPFDFRSLK 758 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~--~~~~~~~l~~L~ 758 (897)
+.|++++|.+.......... .+..+++|++|++++|.. +.++ +......+++|+
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~-----------------------~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISAL-----------------------CPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHS-----------------------CTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCS
T ss_pred CEEECCCCCcCcchHHHHHH-----------------------HhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCC
Confidence 99999999865422111110 124456666777766632 2110 111123456777
Q ss_pred EEEEeCCCCCCCC---cccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccCCCC
Q 036761 759 KIQIYGCHRLKDL---TFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPL 835 (897)
Q Consensus 759 ~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 835 (897)
.|+|++| .++.. +.+..+++|++|++++|. ++.++. .+. ++|+.|+++++ .++.+|. +.
T Consensus 232 ~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~l~~~p~-~~ 293 (312)
T 1wwl_A 232 GLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-RLDRNPS-PD 293 (312)
T ss_dssp EEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-CCCSCCC-TT
T ss_pred EEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-CCCCChh-Hh
Confidence 7777777 34432 234456777777777753 333322 222 67888888774 5566655 66
Q ss_pred CCCCcceeeecCCc
Q 036761 836 PFPCLRDLTVNSCD 849 (897)
Q Consensus 836 ~l~~L~~L~i~~C~ 849 (897)
.+++|++|++++++
T Consensus 294 ~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 294 ELPQVGNLSLKGNP 307 (312)
T ss_dssp TSCEEEEEECTTCT
T ss_pred hCCCCCEEeccCCC
Confidence 77888888887753
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.8e-17 Score=173.36 Aligned_cols=207 Identities=18% Similarity=0.165 Sum_probs=100.6
Q ss_pred CCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCcccee
Q 036761 565 SMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVL 644 (897)
Q Consensus 565 ~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L 644 (897)
.+++|+.|++++| .++.++ .++.+++|++|++++|.++.++ .+..+++|++|++++|.+ ..+|...+.++++|++|
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEE
Confidence 3445555555554 344433 3444555555555555554442 444555555555555542 33443334455555555
Q ss_pred eccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccccc
Q 036761 645 RMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSA 724 (897)
Q Consensus 645 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 724 (897)
++++|..... .+..+..+++|+.|++++|.+..+ +...
T Consensus 115 ~L~~n~l~~~---------------~~~~~~~l~~L~~L~L~~n~l~~~---------------------------~~~~ 152 (272)
T 3rfs_A 115 VLVENQLQSL---------------PDGVFDKLTNLTYLNLAHNQLQSL---------------------------PKGV 152 (272)
T ss_dssp ECTTSCCCCC---------------CTTTTTTCTTCCEEECCSSCCCCC---------------------------CTTT
T ss_pred ECCCCcCCcc---------------CHHHhccCCCCCEEECCCCccCcc---------------------------CHHH
Confidence 5554443211 122234445555555554443221 0112
Q ss_pred ccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcc--cccCCCccEEEEecCchhhhhhcccccCC
Q 036761 725 LAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTF--LLFAPNLKSIEVSSCFAMEEIISEAKFAD 802 (897)
Q Consensus 725 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~ 802 (897)
+..+++|+.|++++|. ++.+++. .+..+++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 153 ~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~------------- 216 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQ-LQSLPEG-VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP------------- 216 (272)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-------------
T ss_pred hccCccCCEEECCCCC-cCccCHH-HhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC-------------
Confidence 3445555566665553 2222221 1345566666666666 3444432 4566777777777653
Q ss_pred ccccccCCCcccccceeecccccccccccCCCCCCCC
Q 036761 803 VPEVMANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPC 839 (897)
Q Consensus 803 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~ 839 (897)
..+.+|+|+.|+++.+.....+|...+.++.
T Consensus 217 ------~~~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 217 ------WDCTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ------BCCCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ------ccccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 1234566777777665555556655544433
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.71 E-value=5.7e-17 Score=172.71 Aligned_cols=191 Identities=22% Similarity=0.317 Sum_probs=153.7
Q ss_pred ccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCE
Q 036761 516 VREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQH 595 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 595 (897)
...+.++++|++.++.+..++.+..+++|++|+++ ++.+..+++ +..+++|++|+|++| .++.+| .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEcc-CCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCE
Confidence 34567899999999999999999999999999999 778888887 899999999999999 788876 7999999999
Q ss_pred eeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhc
Q 036761 596 LDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALR 675 (897)
Q Consensus 596 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (897)
|++++|.++.+|. +..+++|++|++++|.+ ..++. +..+++|++|++++|.... ... +.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~----------------~~~-l~ 170 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSD----------------LTP-LA 170 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCC----------------CGG-GT
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCC----------------Chh-hc
Confidence 9999999999875 99999999999999985 67776 8999999999999987543 222 88
Q ss_pred CCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCC
Q 036761 676 GLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFR 755 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~ 755 (897)
.+++|+.|++++|.+..++. +..+++|++|++++|. +..+++ ...++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-----------------------------l~~l~~L~~L~L~~N~-l~~~~~---l~~l~ 217 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-----------------------------LASLPNLIEVHLKNNQ-ISDVSP---LANTS 217 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-----------------------------GGGCTTCCEEECTTSC-CCBCGG---GTTCT
T ss_pred CCCCCCEEECCCCccCcChh-----------------------------hcCCCCCCEEEccCCc-cCcccc---ccCCC
Confidence 89999999999988765432 3345566666666553 222221 34566
Q ss_pred CccEEEEeCC
Q 036761 756 SLKKIQIYGC 765 (897)
Q Consensus 756 ~L~~L~L~~c 765 (897)
+|+.|++++|
T Consensus 218 ~L~~L~l~~N 227 (308)
T 1h6u_A 218 NLFIVTLTNQ 227 (308)
T ss_dssp TCCEEEEEEE
T ss_pred CCCEEEccCC
Confidence 6666666666
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=5.9e-18 Score=198.89 Aligned_cols=250 Identities=12% Similarity=0.044 Sum_probs=131.9
Q ss_pred cccceEeecccccccccc-----c-ccCCccceeeehhccccccccc----hhhhcCCCcccEEEccCCCCCcccCcccc
Q 036761 519 WENARRFSLMETQIRTLS-----A-VPTCLHLLTLFLIFNEELEMIT----SDFFKSMPRLKVLNLSGARRMSSFPLGIS 588 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~-----~-~~~~~~L~~L~l~~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 588 (897)
++++++|++.+|.+.... . ...+++|++|+++ ++.+..+. ...+.++++|++|+|++| .+..+|..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~-~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECT-TCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEee-ccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHh
Confidence 456666666666543321 1 1346666777666 44343111 123456667777777776 5555666666
Q ss_pred CccCCCEeeccCCCc----cccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccc
Q 036761 589 VLVSLQHLDLSGTAI----RELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLF 664 (897)
Q Consensus 589 ~L~~L~~L~L~~~~i----~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 664 (897)
++++|++|+++++.. ...+..+..+++|+.|+++++. ...+|.. +..+++|++|++++|...
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~-~~~~~~L~~L~Ls~~~l~------------ 306 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL-FPFAAQIRKLDLLYALLE------------ 306 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG-GGGGGGCCEEEETTCCCC------------
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH-HhhcCCCcEEecCCCcCC------------
Confidence 666777776664311 1233345555666666665543 2445543 667778888888776521
Q ss_pred cCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEec----------cCCCccccccc-ccccCCCCc
Q 036761 665 SGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYS----------FKRSEPLDVSA-LAGLKHLNR 733 (897)
Q Consensus 665 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~----------~~~~~~~~~~~-l~~l~~L~~ 733 (897)
.......+..+++|+.|++. +.+.. ..+......+++|+.|++.+ |...+...... ...+++|++
T Consensus 307 --~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 307 --TEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp --HHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred --HHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 11123445677778888777 33221 11112223345677777774 44333322222 234677777
Q ss_pred eeeeecCCccEEEecccCcCCCCccEEEEeC---CCCCCCCc-------ccccCCCccEEEEecCc
Q 036761 734 LWIHECEELEELEMARQPFDFRSLKKIQIYG---CHRLKDLT-------FLLFAPNLKSIEVSSCF 789 (897)
Q Consensus 734 L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~---c~~l~~l~-------~l~~l~~L~~L~L~~c~ 789 (897)
|+++ |..++...+......+++|++|++++ |..++..| .+..+++|++|++++|.
T Consensus 383 L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 383 MAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp EEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred EEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 7774 33333211111122366777777763 33454432 13346777777776554
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.1e-16 Score=167.90 Aligned_cols=215 Identities=24% Similarity=0.231 Sum_probs=142.4
Q ss_pred cccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCCccccC
Q 036761 529 ETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTAIRELP 607 (897)
Q Consensus 529 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp 607 (897)
+..+..+|.. -.++|++|+++ ++.+..++...|.++++|++|+|++| .++.++ ..+.++++|++|++++|.++.++
T Consensus 16 ~~~l~~ip~~-l~~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 16 ELNFYKIPDN-LPFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp TSCCSSCCSS-SCTTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCccccCCC-CCCCccEEECC-CCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3344444431 12468888888 66777777766888888888888888 666654 36788888888888888888776
Q ss_pred -hhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEE
Q 036761 608 -KELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLT 686 (897)
Q Consensus 608 -~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 686 (897)
..+.++++|++|++++|.+ ..++...+..+++|++|+++++..... ..+..+..+++|+.|+++
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSF--------------KLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGGCTTCCEEECC
T ss_pred hhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCcccee--------------cCchhhccCCCCCEEECC
Confidence 4578888888888888874 555543477888888888888764321 135567778888888888
Q ss_pred eCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCC-ceeeeecCCccEEEecccCcCCCCccEEEEeCC
Q 036761 687 LNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLN-RLWIHECEELEELEMARQPFDFRSLKKIQIYGC 765 (897)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c 765 (897)
+|.+..++. ..+..+..++.|. +|++++|. +..+++. .....+|+.|+|++|
T Consensus 158 ~N~l~~~~~------------------------~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~--~~~~~~L~~L~L~~n 210 (276)
T 2z62_A 158 SNKIQSIYC------------------------TDLRVLHQMPLLNLSLDLSLNP-MNFIQPG--AFKEIRLKELALDTN 210 (276)
T ss_dssp SSCCCEECG------------------------GGGHHHHTCTTCCEEEECCSSC-CCEECTT--SSCSCCEEEEECCSS
T ss_pred CCCCCcCCH------------------------HHhhhhhhccccceeeecCCCc-ccccCcc--ccCCCcccEEECCCC
Confidence 877654210 0001122233333 67777664 4444332 223457888888888
Q ss_pred CCCCCCcc--cccCCCccEEEEecCc
Q 036761 766 HRLKDLTF--LLFAPNLKSIEVSSCF 789 (897)
Q Consensus 766 ~~l~~l~~--l~~l~~L~~L~L~~c~ 789 (897)
.++.++. +..+++|+.|++++|+
T Consensus 211 -~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 -QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -ceeecCHhHhcccccccEEEccCCc
Confidence 4666653 5678888888888753
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.8e-17 Score=173.40 Aligned_cols=218 Identities=17% Similarity=0.236 Sum_probs=137.2
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
++..+.+..+.+........+++|+.|++. ++.+..++. +..+++|++|++++| .++.++ .++.+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~-~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIAN-NSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECT-TSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccccccccceeeeeeC-CCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCC
Confidence 344445555555555555566777777777 555655553 666777777777777 555554 667777777777777
Q ss_pred CCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 601 TAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 601 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
|.++.+|.. ++.+++|++|++++|.+ ..+|...+..+++|++|++++|..... .+..+..+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~~~~~~~l~~ 158 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSL---------------PKGVFDKLTN 158 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCC---------------CTTTTTTCTT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcC-CccCHHHhccCCCCCEEECCCCccCcc---------------CHHHhccCcc
Confidence 777766654 56777777777777764 555555567777777777777654321 2233566777
Q ss_pred CCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccE
Q 036761 680 LEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKK 759 (897)
Q Consensus 680 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 759 (897)
|+.|++++|.+..++ ...+..+++|+.|++++|. +..+++. .+..+++|+.
T Consensus 159 L~~L~l~~n~l~~~~---------------------------~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~ 209 (272)
T 3rfs_A 159 LTELDLSYNQLQSLP---------------------------EGVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQY 209 (272)
T ss_dssp CCEEECCSSCCCCCC---------------------------TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCE
T ss_pred CCEEECCCCCcCccC---------------------------HHHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCE
Confidence 777777776654321 1234566777777777764 3333332 2456788888
Q ss_pred EEEeCCCCCCCCcccccCCCccEEEEecCchhhhh
Q 036761 760 IQIYGCHRLKDLTFLLFAPNLKSIEVSSCFAMEEI 794 (897)
Q Consensus 760 L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~i 794 (897)
|+|++|+. .+.+|+|+.|+++.+.....+
T Consensus 210 L~l~~N~~------~~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 210 IWLHDNPW------DCTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp EECCSSCB------CCCTTTTHHHHHHHHHTGGGB
T ss_pred EEccCCCc------cccCcHHHHHHHHHHhCCCcc
Confidence 88888742 244677888877775443333
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=8.5e-17 Score=169.54 Aligned_cols=199 Identities=22% Similarity=0.224 Sum_probs=142.7
Q ss_pred ccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEee
Q 036761 518 EWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLD 597 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~ 597 (897)
.+.+++.+++.++.+..+|... .+++++|+++ ++.+..+++..|..+++|++|+|++| .++.+|.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECT-TSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcC-CCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 4457888888888888887432 3688999998 67788887777889999999999998 77777754 7888999999
Q ss_pred ccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCC
Q 036761 598 LSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGL 677 (897)
Q Consensus 598 L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 677 (897)
+++|.++.+|..+..+++|++|++++|.+ ..+|.+.+..+++|++|++++|..... ....+..+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l 147 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKTL---------------PPGLLTPT 147 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTTSCCCCC---------------CTTTTTTC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCCCCCCcc---------------Chhhcccc
Confidence 99999999988888899999999999874 667766688888888888888765432 23345667
Q ss_pred CCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCc
Q 036761 678 EHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSL 757 (897)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 757 (897)
++|+.|++++|.+..+ +...+..+++|+.|++++|. ++.++.. ...+++|
T Consensus 148 ~~L~~L~L~~N~l~~l---------------------------~~~~~~~l~~L~~L~L~~N~-l~~ip~~--~~~~~~L 197 (290)
T 1p9a_G 148 PKLEKLSLANNNLTEL---------------------------PAGLLNGLENLDTLLLQENS-LYTIPKG--FFGSHLL 197 (290)
T ss_dssp TTCCEEECTTSCCSCC---------------------------CTTTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCCC
T ss_pred cCCCEEECCCCcCCcc---------------------------CHHHhcCcCCCCEEECCCCc-CCccChh--hcccccC
Confidence 7777777776665432 11234456667777776663 3333222 2344566
Q ss_pred cEEEEeCCC
Q 036761 758 KKIQIYGCH 766 (897)
Q Consensus 758 ~~L~L~~c~ 766 (897)
+.|+|++|+
T Consensus 198 ~~l~L~~Np 206 (290)
T 1p9a_G 198 PFAFLHGNP 206 (290)
T ss_dssp SEEECCSCC
T ss_pred CeEEeCCCC
Confidence 666666663
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.8e-18 Score=196.61 Aligned_cols=308 Identities=18% Similarity=0.141 Sum_probs=183.0
Q ss_pred ccccceEeeccccccccc--ccc-cCCc----cceeeehhcccccccc----chhhhcCCCcccEEEccCCCCCcc-cCc
Q 036761 518 EWENARRFSLMETQIRTL--SAV-PTCL----HLLTLFLIFNEELEMI----TSDFFKSMPRLKVLNLSGARRMSS-FPL 585 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~~l~~l----~~~~~~~l~~L~~L~Ls~~~~~~~-lp~ 585 (897)
.++++++|++++|.+... ..+ ..++ +|++|+++ ++.+... .+..+..+++|++|+|++| .++. .+.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~ 131 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQ 131 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT-TSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc-CCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHH
Confidence 345677777777766442 111 1222 57777777 4445421 1334677777777777777 4432 121
Q ss_pred cc-----cCccCCCEeeccCCCccc-----cChhhhcCCcCcEecCCCCccccccChh----hhhcCCccceeeccccCC
Q 036761 586 GI-----SVLVSLQHLDLSGTAIRE-----LPKELNALENLQCLNLEETHFLITIPRQ----LISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 586 ~i-----~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~----~~~~l~~L~~L~l~~~~~ 651 (897)
.+ ..+.+|++|++++|.++. ++..+..+++|++|++++|.+....+.. +...+++|++|++++|..
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 11 224567777777777663 4555667777777777777642221211 111355777887777654
Q ss_pred CCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHH--HHhc-hhccccceeEEEeccCCCcccc----ccc
Q 036761 652 WSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQC--VLKS-KELRRCTQALYLYSFKRSEPLD----VSA 724 (897)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~~----~~~ 724 (897)
... +....+..+..+++|+.|++++|.+..... +... ....+.|+.|++++|.. +... ...
T Consensus 212 ~~~-----------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~ 279 (461)
T 1z7x_W 212 TSD-----------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI-TAKGCGDLCRV 279 (461)
T ss_dssp BTT-----------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-CHHHHHHHHHH
T ss_pred cHH-----------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC-CHHHHHHHHHH
Confidence 320 111245667788999999999988765321 1111 11246899999998853 3321 124
Q ss_pred ccccCCCCceeeeecCCccEEEec----ccCcCCCCccEEEEeCCCCCCCC------cccccCCCccEEEEecCchhhhh
Q 036761 725 LAGLKHLNRLWIHECEELEELEMA----RQPFDFRSLKKIQIYGCHRLKDL------TFLLFAPNLKSIEVSSCFAMEEI 794 (897)
Q Consensus 725 l~~l~~L~~L~l~~~~~l~~l~~~----~~~~~l~~L~~L~L~~c~~l~~l------~~l~~l~~L~~L~L~~c~~l~~i 794 (897)
+..+++|++|++++|.. ....+. ......++|++|+|++| .++.. ..+..+++|++|++++|. +.+.
T Consensus 280 l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~ 356 (461)
T 1z7x_W 280 LRAKESLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 356 (461)
T ss_dssp HHHCTTCCEEECTTCCC-HHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHH
T ss_pred HhhCCCcceEECCCCCC-chHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCCc-cccc
Confidence 55688999999998843 211111 11223479999999999 45432 135567999999999974 4443
Q ss_pred hcccccCCccccccCC-Ccccccceeecccccccc----cccCCCCCCCCcceeeecCCc
Q 036761 795 ISEAKFADVPEVMANL-KPFAQLYSLRLGGLTVLK----SIYKRPLPFPCLRDLTVNSCD 849 (897)
Q Consensus 795 ~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~i~~C~ 849 (897)
... .+...+ ...++|+.|++++|.--. .++..+..+++|++|++++|+
T Consensus 357 ~~~-------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 357 GVR-------ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHH-------HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cHH-------HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 210 000111 126799999999974322 555555668999999999974
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.8e-16 Score=165.61 Aligned_cols=127 Identities=20% Similarity=0.320 Sum_probs=81.9
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~ 599 (897)
..+.++++++.+..+|... .++|++|+++ ++.+..++...|.++++|++|+|++| .++.+|.. +.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQ-SNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECc-CCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 3456667777766665421 2567777777 55566666655777777777777777 56666544 3667777777777
Q ss_pred CCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 600 GTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 600 ~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
+|.++.+|.. +..+++|++|++++|.+ ..+|...+..+++|++|+++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcC
Confidence 7777766643 46677777777777763 555554466666677776666553
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=3.2e-17 Score=168.07 Aligned_cols=103 Identities=19% Similarity=0.273 Sum_probs=50.9
Q ss_pred cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccC-CCccccCh-hhhcCCcCcEe
Q 036761 543 HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSG-TAIRELPK-ELNALENLQCL 619 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~-~~i~~lp~-~i~~L~~L~~L 619 (897)
+|++|+++ ++.++.+++..|.++++|++|++++|..++.+|. .+.++++|++|++++ |.++.+|. .+..+++|++|
T Consensus 32 ~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEe-CCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 45555555 4445555554455555555555555522444433 345555555555555 55555543 34455555555
Q ss_pred cCCCCccccccChhhhhcCCccc---eeecccc
Q 036761 620 NLEETHFLITIPRQLISSFSSLI---VLRMFGV 649 (897)
Q Consensus 620 ~L~~~~~l~~lp~~~~~~l~~L~---~L~l~~~ 649 (897)
++++|.+ ..+|. +..+++|+ +|+++++
T Consensus 111 ~l~~n~l-~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 111 GIFNTGL-KMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp EEEEECC-CSCCC--CTTCCBCCSEEEEEEESC
T ss_pred eCCCCCC-ccccc--cccccccccccEEECCCC
Confidence 5555542 33443 44444444 4444443
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=5.1e-17 Score=166.51 Aligned_cols=99 Identities=17% Similarity=0.315 Sum_probs=68.1
Q ss_pred eeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCC-ccccCh-hhhcCCcCcEecCC
Q 036761 546 TLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTA-IRELPK-ELNALENLQCLNLE 622 (897)
Q Consensus 546 ~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~L~ 622 (897)
.+.+. |..++.+|. + .++|++|++++| .++.+|. .+.++++|++|++++|. ++.+|. .+.++++|++|+++
T Consensus 15 ~~~v~-c~~l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~ 88 (239)
T 2xwt_C 15 DFRVT-CKDIQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88 (239)
T ss_dssp TTEEE-ECSCSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred cceeE-ccCccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence 34444 444667775 2 237888888888 6666665 57778888888888886 777765 57778888888888
Q ss_pred C-CccccccChhhhhcCCccceeeccccCC
Q 036761 623 E-THFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 623 ~-~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
+ |. +..+|...+.++++|++|++++|..
T Consensus 89 ~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 89 NTRN-LTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp EETT-CCEECTTSEECCTTCCEEEEEEECC
T ss_pred CCCC-eeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 7 54 4666655566677777777766653
No 82
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=3.8e-18 Score=193.85 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCcccccceeeccccccccccc-C----CC-CCCCCcceeeecCCccCC-----CCCCCCC-cccccceEEEeh
Q 036761 810 LKPFAQLYSLRLGGLTVLKSIY-K----RP-LPFPCLRDLTVNSCDELR-----KLPLDSN-SAKERKIVIRGY 871 (897)
Q Consensus 810 ~~~~~~L~~L~l~~~~~l~~~~-~----~~-~~l~~L~~L~i~~C~~L~-----~lp~~~~-~~~~~~l~i~~c 871 (897)
+..+++|+.|++++|. +.... . .. ...++|++|++++| .++ .+|.... ..+++.+++++|
T Consensus 337 l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 337 LAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 4456788888888763 33221 1 11 12578899999887 455 4453322 233477888877
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=2.4e-16 Score=164.67 Aligned_cols=196 Identities=21% Similarity=0.260 Sum_probs=142.9
Q ss_pred cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCCccccChh-hhcCCcCcEec
Q 036761 543 HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLN 620 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 620 (897)
++++++++ ++.++.+|..+ .++|++|+|++| .++.+|. .+.++++|++|++++|.++.+|.. +..+++|++|+
T Consensus 17 ~~~~l~~~-~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCS-SKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECT-TSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEcc-CCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 46788888 77788888653 267999999999 6777664 688999999999999999988876 47899999999
Q ss_pred CCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhch
Q 036761 621 LEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSK 700 (897)
Q Consensus 621 L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 700 (897)
+++|.+ ..+|...+..+++|++|+++++..... .+..+..+++|+.|++++|.+..++
T Consensus 92 l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~~L~~L~Ls~n~l~~~~------ 149 (270)
T 2o6q_A 92 VTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSL---------------PPRVFDSLTKLTYLSLGYNELQSLP------ 149 (270)
T ss_dssp CCSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCC---------------CTTTTTTCTTCCEEECCSSCCCCCC------
T ss_pred CCCCcC-CcCCHhHcccccCCCEEECCCCccCee---------------CHHHhCcCcCCCEEECCCCcCCccC------
Confidence 999974 677776678899999999988765432 3344677888888888877654321
Q ss_pred hccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcc--cccCC
Q 036761 701 ELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTF--LLFAP 778 (897)
Q Consensus 701 ~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~ 778 (897)
...+..+++|+.|++++|. ++.+++. .+..+++|+.|+|++| .++.++. +..++
T Consensus 150 ---------------------~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~ 205 (270)
T 2o6q_A 150 ---------------------KGVFDKLTSLKELRLYNNQ-LKRVPEG-AFDKLTELKTLKLDNN-QLKRVPEGAFDSLE 205 (270)
T ss_dssp ---------------------TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred ---------------------HhHccCCcccceeEecCCc-CcEeChh-HhccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence 1235566778888887763 3333322 2456778888888877 5555552 55677
Q ss_pred CccEEEEecCc
Q 036761 779 NLKSIEVSSCF 789 (897)
Q Consensus 779 ~L~~L~L~~c~ 789 (897)
+|+.|+|++|+
T Consensus 206 ~L~~L~l~~N~ 216 (270)
T 2o6q_A 206 KLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEecCCC
Confidence 78888877754
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.4e-16 Score=173.12 Aligned_cols=237 Identities=16% Similarity=0.199 Sum_probs=123.1
Q ss_pred EEccCCCCCcccCccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeecc-cc
Q 036761 572 LNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMF-GV 649 (897)
Q Consensus 572 L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~-~~ 649 (897)
++.+++ .++.+|..+ ..+|++|+|++|+|+.+|.. |.++++|++|+|++|.+.+.+|.+.+.++++|.++... .+
T Consensus 14 v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 14 FLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 334443 344444433 13444444444444444432 44444555555544444344444434444444432222 22
Q ss_pred CCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccccccccc-
Q 036761 650 GDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGL- 728 (897)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l- 728 (897)
....+ .+..+..+++|+.|++++|.+..++.... .....+..|.+.++.....++...+..+
T Consensus 91 ~l~~l---------------~~~~f~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 91 NLLYI---------------NPEAFQNLPNLQYLLISNTGIKHLPDVHK--IHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp TCCEE---------------CTTSBCCCTTCCEEEEEEECCSSCCCCTT--CCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred ccccc---------------CchhhhhccccccccccccccccCCchhh--cccchhhhhhhccccccccccccchhhcc
Confidence 21110 12234445555555555554433221100 0011233444444333333333334444
Q ss_pred CCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcc--cccCCCccEEEEecCchhhhhhcccccCCcccc
Q 036761 729 KHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTF--LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEV 806 (897)
Q Consensus 729 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~ 806 (897)
..|+.|++++| .++.++.. .....+|++|.+.++..++.+|. +..+++|+.|+|++| .++.++.
T Consensus 154 ~~l~~L~L~~N-~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~---------- 219 (350)
T 4ay9_X 154 FESVILWLNKN-GIQEIHNS--AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS---------- 219 (350)
T ss_dssp SSCEEEECCSS-CCCEECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----------
T ss_pred hhhhhhccccc-cccCCChh--hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----------
Confidence 35777888876 45555433 22456788888887767877763 567888888888885 4555432
Q ss_pred ccCCCcccccceeecccccccccccCCCCCCCCcceeeecC
Q 036761 807 MANLKPFAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNS 847 (897)
Q Consensus 807 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i~~ 847 (897)
..|.+|+.|.+.++.+++.+|. ...+++|+.+++.+
T Consensus 220 ----~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ----YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp ----SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred ----hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 3466777777777777887774 55678888888754
No 85
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=3.7e-17 Score=192.05 Aligned_cols=306 Identities=16% Similarity=0.162 Sum_probs=210.5
Q ss_pred ccccceEeeccccccccc-----cc-ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC---cccCcccc
Q 036761 518 EWENARRFSLMETQIRTL-----SA-VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM---SSFPLGIS 588 (897)
Q Consensus 518 ~~~~lr~L~l~~~~~~~l-----~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~---~~lp~~i~ 588 (897)
.+.+++.|+++.|.+..+ +. +..+++|++|+++ .+.+..++ ..+..+++|++|+++++... ...+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-SCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-CccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 456899999999887632 22 3578999999999 56677777 45889999999999864222 23456788
Q ss_pred CccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCcc
Q 036761 589 VLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGD 668 (897)
Q Consensus 589 ~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 668 (897)
.+++|+.|+++++....+|..+..+++|++|++++|.+.......++..+++|++|++..+- ...
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~---------------~~~ 332 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI---------------GDR 332 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG---------------HHH
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc---------------CHH
Confidence 89999999999987788999999999999999999984333333446899999999998431 112
Q ss_pred chhHHhcCCCCCCEEEEEe-----------CCcccHHHHHhchhccccceeEEEeccCCCcccccccccc-cCCCCceee
Q 036761 669 LLVEALRGLEHLEVLSLTL-----------NNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAG-LKHLNRLWI 736 (897)
Q Consensus 669 ~~~~~l~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~-l~~L~~L~l 736 (897)
.....+..+++|+.|+++. +.++. ..+......+++|+.|.+..+. .+......+.. +++|+.|++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l 410 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRL 410 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEE
Confidence 2344456789999999993 34332 2222223346789999995443 33333334443 889999999
Q ss_pred ee---cCCccEEEec----ccCcCCCCccEEEEeCCCC-CCC--Ccccc-cCCCccEEEEecCchhhhhhcccccCCccc
Q 036761 737 HE---CEELEELEMA----RQPFDFRSLKKIQIYGCHR-LKD--LTFLL-FAPNLKSIEVSSCFAMEEIISEAKFADVPE 805 (897)
Q Consensus 737 ~~---~~~l~~l~~~----~~~~~l~~L~~L~L~~c~~-l~~--l~~l~-~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~ 805 (897)
++ |+.++..+.. .....+++|++|+|++|.+ ++. +..+. .+++|++|+|++|..-.....
T Consensus 411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------- 481 (592)
T 3ogk_B 411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM--------- 481 (592)
T ss_dssp EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH---------
T ss_pred eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH---------
Confidence 85 4445432111 1134589999999988753 332 12233 489999999998753221111
Q ss_pred cccCCCcccccceeeccccccccc--ccCCCCCCCCcceeeecCCccCCCCC
Q 036761 806 VMANLKPFAQLYSLRLGGLTVLKS--IYKRPLPFPCLRDLTVNSCDELRKLP 855 (897)
Q Consensus 806 ~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~i~~C~~L~~lp 855 (897)
.....+++|+.|++++|+ ++. ++.....+++|+.|++++|+ ++.-.
T Consensus 482 --~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~ 529 (592)
T 3ogk_B 482 --EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTG 529 (592)
T ss_dssp --HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTC
T ss_pred --HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHH
Confidence 134567999999999998 432 23233468999999999997 66543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=2e-16 Score=165.98 Aligned_cols=215 Identities=22% Similarity=0.193 Sum_probs=159.1
Q ss_pred cCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+..+...|.. -..++++|++++|.+..++ .+..+++|++|+++ ++.+..++...|.++++|++|+|++| .++.+
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 91 (276)
T 2z62_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSL 91 (276)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred cCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCC-ccCcc
Confidence 33344444431 1247999999999999887 47889999999999 67888888877999999999999999 66665
Q ss_pred C-ccccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCcccc-ccChhhhhcCCccceeeccccCCCCCCCCCCC
Q 036761 584 P-LGISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLI-TIPRQLISSFSSLIVLRMFGVGDWSPNGKKND 660 (897)
Q Consensus 584 p-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 660 (897)
+ ..+.++++|++|++++|.++.++. .++.+++|++|++++|.+.. .+|.. +.++++|++|++++|.....
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------ 164 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------ 164 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE------
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC------
Confidence 4 679999999999999999998876 69999999999999998633 25665 89999999999999875432
Q ss_pred CccccCccchhHHhcCCCCCC-EEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeec
Q 036761 661 SDLFSGGDLLVEALRGLEHLE-VLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHEC 739 (897)
Q Consensus 661 ~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 739 (897)
.......+..++.|. .|++++|.+..++. ..+ ...+|+.|++++|
T Consensus 165 ------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~---------------------------~~~-~~~~L~~L~L~~n 210 (276)
T 2z62_A 165 ------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP---------------------------GAF-KEIRLKELALDTN 210 (276)
T ss_dssp ------CGGGGHHHHTCTTCCEEEECCSSCCCEECT---------------------------TSS-CSCCEEEEECCSS
T ss_pred ------CHHHhhhhhhccccceeeecCCCcccccCc---------------------------ccc-CCCcccEEECCCC
Confidence 111233444455444 67777776543211 111 2236888888877
Q ss_pred CCccEEEecccCcCCCCccEEEEeCCC
Q 036761 740 EELEELEMARQPFDFRSLKKIQIYGCH 766 (897)
Q Consensus 740 ~~l~~l~~~~~~~~l~~L~~L~L~~c~ 766 (897)
. ++.++. ..+..+++|+.|+|++|+
T Consensus 211 ~-l~~~~~-~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 Q-LKSVPD-GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp C-CSCCCT-TTTTTCCSCCEEECCSSC
T ss_pred c-eeecCH-hHhcccccccEEEccCCc
Confidence 4 444433 335678899999999884
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=4.8e-17 Score=176.28 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=108.1
Q ss_pred hcCC--CcccEEEccCCCCCcccCccccCccCCCEeeccCCCccc--cChhhhcCCcCcEecCCCCccccccChhhhhcC
Q 036761 563 FKSM--PRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRE--LPKELNALENLQCLNLEETHFLITIPRQLISSF 638 (897)
Q Consensus 563 ~~~l--~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l 638 (897)
+..+ +++++|++++| .++..+..+..+++|++|++++|.++. +|..+..+++|++|++++|.+....|.. +..+
T Consensus 64 ~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~ 141 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKN 141 (336)
T ss_dssp HHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTC
T ss_pred HHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcC
Confidence 4444 66667777766 455444455666677777777766652 5666666777777777776643344443 5666
Q ss_pred CccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeC-CcccHHHHHhchhccccceeEEEeccCCC
Q 036761 639 SSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLN-NFQDLQCVLKSKELRRCTQALYLYSFKRS 717 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 717 (897)
++|++|++++|...+ +...+..+..+++|+.|++++| .+.... ..
T Consensus 142 ~~L~~L~L~~~~~l~-------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~~-------------------- 187 (336)
T 2ast_B 142 SNLVRLNLSGCSGFS-------------EFALQTLLSSCSRLDELNLSWCFDFTEKH-VQ-------------------- 187 (336)
T ss_dssp TTCSEEECTTCBSCC-------------HHHHHHHHHHCTTCCEEECCCCTTCCHHH-HH--------------------
T ss_pred CCCCEEECCCCCCCC-------------HHHHHHHHhcCCCCCEEcCCCCCCcChHH-HH--------------------
Confidence 777777776653211 1113444566666666666666 443210 00
Q ss_pred cccccccccccC-CCCceeeeecC-CccEEEecccCcCCCCccEEEEeCCCCCCC--CcccccCCCccEEEEecCchhhh
Q 036761 718 EPLDVSALAGLK-HLNRLWIHECE-ELEELEMARQPFDFRSLKKIQIYGCHRLKD--LTFLLFAPNLKSIEVSSCFAMEE 793 (897)
Q Consensus 718 ~~~~~~~l~~l~-~L~~L~l~~~~-~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~ 793 (897)
..+..++ +|++|++++|. .+..-........+++|++|++++|..++. ++.+..+++|++|++++|..+..
T Consensus 188 -----~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 188 -----VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp -----HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred -----HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 1123344 55555555542 111000000123455566666665543332 33455566666666666642211
Q ss_pred hhcccccCCccccccCCCcccccceeecccc
Q 036761 794 IISEAKFADVPEVMANLKPFAQLYSLRLGGL 824 (897)
Q Consensus 794 i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 824 (897)
.. ...+..+++|+.|++++|
T Consensus 263 ~~-----------~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 263 ET-----------LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GG-----------GGGGGGCTTCCEEECTTS
T ss_pred HH-----------HHHHhcCCCCCEEeccCc
Confidence 10 012445666666666665
No 88
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=2e-15 Score=164.52 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=178.3
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC------CHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL------QIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~ 228 (897)
..+|||++++++|.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...+...+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER--P-----GILIDCRELYAERGHITREELIKELQ 82 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS--S-----EEEEEHHHHHHTTTCBCHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc--C-----cEEEEeecccccccCCCHHHHHHHHH
Confidence 57899999999999988654 799999999999999999999875 1 6777765432 5666677666
Q ss_pred HHhCCC--------------Cc--hhccccHHHHHHHHHHHhcc-CceEEEEeccccccc---------cccccccCCCC
Q 036761 229 KKVGLF--------------ND--SWMKKNLAERAVDIYNVLKE-KKFVLLLDDVWQRVA---------FTTVGVPIPPR 282 (897)
Q Consensus 229 ~~l~~~--------------~~--~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------~~~~~~~l~~~ 282 (897)
+.+... .. .....+..++...+.+.... ++++|||||++.... +..+......
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~- 161 (350)
T 2qen_A 83 STISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS- 161 (350)
T ss_dssp HHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-
Confidence 655420 00 00123455666666666543 499999999976432 1222111111
Q ss_pred CCCCcEEEEecCChhH-hhh----------c-CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC
Q 036761 283 DKSASKVVFTTRSTEV-CGW----------M-GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS 350 (897)
Q Consensus 283 ~~~~s~iivTtR~~~v-~~~----------~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g 350 (897)
..+ .++|+|++.... ... . .....+.+.+|+.+|+.+++...+....... -.+.+..|++.|+|
T Consensus 162 ~~~-~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~tgG 237 (350)
T 2qen_A 162 LPN-LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELLDG 237 (350)
T ss_dssp CTT-EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHHTT
T ss_pred cCC-eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCC
Confidence 123 889999987653 211 1 1124789999999999999987653221111 13567899999999
Q ss_pred cchHHHHHHhhhhcCCChHHHHH-HHHHHcccCCCCCCChHHHHHHH-HHhhCCCCCccchhhhhhhccCCCCcccChhh
Q 036761 351 LPLALIITGRAMACKKTPEEWRD-AIKVLQTSASEFPGLENDVLRVL-KFSYDSLPDDTTRSCLLYCCLFPEDYRIYKEN 428 (897)
Q Consensus 351 lPlai~~~~~~l~~~~~~~~w~~-~~~~l~~~~~~~~~~~~~v~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~ 428 (897)
+|+++..++..+....+...+.. ..+... ..+...+ .+.+ + ++ ..+..+..++. + ......
T Consensus 238 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~l~~-~-~~-~~~~~l~~la~---g-~~~~~~ 300 (350)
T 2qen_A 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAK----------GLIMGELEELRR-R-SP-RYVDILRAIAL---G-YNRWSL 300 (350)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHH-H-CH-HHHHHHHHHHT---T-CCSHHH
T ss_pred CHHHHHHHHHHHhccccHhHHHHHHHHHHH----------HHHHHHHHHHHh-C-Ch-hHHHHHHHHHh---C-CCCHHH
Confidence 99999998876532222222211 111100 0011111 1122 2 55 67888888887 2 134445
Q ss_pred HHHHHHhcCccccCCcchhhhhHHHHHHHHHHhccccccCCceEE-echhHHHHHH
Q 036761 429 LIDCWIGEGFLKVTGKYEVQDKGHTILGNIVHACLLEEEGDDVVK-MHDLIRDMTL 483 (897)
Q Consensus 429 li~~w~aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-mHdlv~~~a~ 483 (897)
+........ . .........+++.|.+.++|...+ ..|. .|++++++.+
T Consensus 301 l~~~~~~~~-----~-~~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG-----T-KIPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT-----C-CCCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHh-----C-CCCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 444332210 0 011345668899999999998763 4455 4778887753
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.7e-17 Score=194.97 Aligned_cols=248 Identities=16% Similarity=0.180 Sum_probs=118.1
Q ss_pred cccceEeecccccccc-----cccc-cCCccceeeehhccccccccch----hhhcCCCcccEEEccCCCCCcccCcccc
Q 036761 519 WENARRFSLMETQIRT-----LSAV-PTCLHLLTLFLIFNEELEMITS----DFFKSMPRLKVLNLSGARRMSSFPLGIS 588 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~l~~l~~----~~~~~l~~L~~L~Ls~~~~~~~lp~~i~ 588 (897)
++++++|++.+|.+.. ++.+ ..+++|++|+++++. ..++. .++..+++|++|+|++|..++.+|..+.
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~ 232 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ 232 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh
Confidence 4456666666655433 2222 245566666666332 11111 1223456666666666644444555555
Q ss_pred CccCCCEeeccCC-------CccccChhhhcCCcCcEe-cCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCC
Q 036761 589 VLVSLQHLDLSGT-------AIRELPKELNALENLQCL-NLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKND 660 (897)
Q Consensus 589 ~L~~L~~L~L~~~-------~i~~lp~~i~~L~~L~~L-~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 660 (897)
.+++|++|+++.+ .+..++..+.++++|+.| .+.+.. ...+|. ++..+++|++|++++|...
T Consensus 233 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~-~~~~~~~L~~L~L~~~~l~-------- 302 (594)
T 2p1m_B 233 RAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPA-VYSVCSRLTTLNLSYATVQ-------- 302 (594)
T ss_dssp HCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGG-GHHHHTTCCEEECTTCCCC--------
T ss_pred cCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHH-HHHhhCCCCEEEccCCCCC--------
Confidence 6666666664433 223344445555555555 333222 123333 2446677777777766521
Q ss_pred CccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEecc--------CCCccccccccc-ccCCC
Q 036761 661 SDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSF--------KRSEPLDVSALA-GLKHL 731 (897)
Q Consensus 661 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--------~~~~~~~~~~l~-~l~~L 731 (897)
.......+..+++|+.|++.+| +. ...+......+++|+.|++.++ ...+......+. .+++|
T Consensus 303 ------~~~l~~~~~~~~~L~~L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L 374 (594)
T 2p1m_B 303 ------SYDLVKLLCQCPKLQRLWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374 (594)
T ss_dssp ------HHHHHHHHTTCTTCCEEEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC
T ss_pred ------HHHHHHHHhcCCCcCEEeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH
Confidence 1112333556777777777766 22 1111112223456777777432 222222222222 36667
Q ss_pred CceeeeecCCccEEEecccCcCCCCccEEEEe-----CCCCCCCCcc-------cccCCCccEEEEec
Q 036761 732 NRLWIHECEELEELEMARQPFDFRSLKKIQIY-----GCHRLKDLTF-------LLFAPNLKSIEVSS 787 (897)
Q Consensus 732 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~-----~c~~l~~l~~-------l~~l~~L~~L~L~~ 787 (897)
++|.+. |..++..........+++|+.|+|+ +|..++..|. +..+++|+.|+|++
T Consensus 375 ~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 375 ESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp CEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 777443 3333321111111245667777776 3445553321 33456666666644
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=3.6e-16 Score=164.70 Aligned_cols=199 Identities=20% Similarity=0.189 Sum_probs=153.5
Q ss_pred ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCccccChhhhcCCcC
Q 036761 538 VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIRELPKELNALENL 616 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L 616 (897)
+.+++++++++++ ++.++.+|..+ .++|++|+|++| .++.+ |..+..+++|++|++++|.|+.+|.. +.+++|
T Consensus 6 ~~~l~~l~~l~~~-~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCD-KRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECT-TSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECC-CCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 4567788999998 77788888764 268899999999 56554 56788999999999999999988765 788999
Q ss_pred cEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHH
Q 036761 617 QCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCV 696 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 696 (897)
++|++++|.+ ..+|.. +..+++|++|+++++..... .+..+..+++|+.|++++|.+..+
T Consensus 80 ~~L~Ls~N~l-~~l~~~-~~~l~~L~~L~l~~N~l~~l---------------~~~~~~~l~~L~~L~L~~N~l~~~--- 139 (290)
T 1p9a_G 80 GTLDLSHNQL-QSLPLL-GQTLPALTVLDVSFNRLTSL---------------PLGALRGLGELQELYLKGNELKTL--- 139 (290)
T ss_dssp CEEECCSSCC-SSCCCC-TTTCTTCCEEECCSSCCCCC---------------CSSTTTTCTTCCEEECTTSCCCCC---
T ss_pred CEEECCCCcC-CcCchh-hccCCCCCEEECCCCcCccc---------------CHHHHcCCCCCCEEECCCCCCCcc---
Confidence 9999999974 678875 78899999999998875532 334577788888888888776432
Q ss_pred HhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc-ccc
Q 036761 697 LKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT-FLL 775 (897)
Q Consensus 697 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~ 775 (897)
+...+..+++|+.|++++|. ++.++. ..+..+++|+.|+|++| .++.+| .+.
T Consensus 140 ------------------------~~~~~~~l~~L~~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip~~~~ 192 (290)
T 1p9a_G 140 ------------------------PPGLLTPTPKLEKLSLANNN-LTELPA-GLLNGLENLDTLLLQEN-SLYTIPKGFF 192 (290)
T ss_dssp ------------------------CTTTTTTCTTCCEEECTTSC-CSCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred ------------------------ChhhcccccCCCEEECCCCc-CCccCH-HHhcCcCCCCEEECCCC-cCCccChhhc
Confidence 12245678899999999874 454433 33567899999999999 666766 466
Q ss_pred cCCCccEEEEecCc
Q 036761 776 FAPNLKSIEVSSCF 789 (897)
Q Consensus 776 ~l~~L~~L~L~~c~ 789 (897)
.+++|+.|+|++|+
T Consensus 193 ~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 193 GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTCCCSEEECCSCC
T ss_pred ccccCCeEEeCCCC
Confidence 77899999999864
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.1e-16 Score=171.84 Aligned_cols=240 Identities=18% Similarity=0.149 Sum_probs=176.0
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCE-eeccC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQH-LDLSG 600 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~-L~L~~ 600 (897)
+.+..++++++++|.-. .+++++|+|+ ++.++.+|.+.|.++++|++|+|++|...+.+|. .|.++++|+. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34556667777776421 3678999999 7789999988899999999999999944455664 4678888775 56667
Q ss_pred CCccccC-hhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCC-C
Q 036761 601 TAIRELP-KELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGL-E 678 (897)
Q Consensus 601 ~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~ 678 (897)
|+++.+| ..+..+++|++|++++|.+ ..+|...+....++..|++.++.... ......+..+ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~--------------~l~~~~f~~~~~ 154 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIH--------------TIERNSFVGLSF 154 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCC--------------EECTTSSTTSBS
T ss_pred CcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccc--------------cccccchhhcch
Confidence 8899885 4578899999999999974 66665445566677788776643221 0011223344 3
Q ss_pred CCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCcc
Q 036761 679 HLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLK 758 (897)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 758 (897)
.++.|++++|.+..++.... ...+++.|.+.++...+.++...+..+++|+.|++++| .++.++. ..+.+|+
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~----~~~~~L~ 226 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS----YGLENLK 226 (350)
T ss_dssp SCEEEECCSSCCCEECTTSS---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS----SSCTTCC
T ss_pred hhhhhccccccccCCChhhc---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh----hhhccch
Confidence 68889999998876543221 23468888888777777777667888999999999988 4565533 3478999
Q ss_pred EEEEeCCCCCCCCcccccCCCccEEEEec
Q 036761 759 KIQIYGCHRLKDLTFLLFAPNLKSIEVSS 787 (897)
Q Consensus 759 ~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 787 (897)
+|.+.+|..++.+|.+..+++|+.+++.+
T Consensus 227 ~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 227 KLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred HhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999998999999999999999999976
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.64 E-value=8e-15 Score=160.24 Aligned_cols=289 Identities=14% Similarity=0.122 Sum_probs=172.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-----CCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-----LQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~ 229 (897)
..+|||+++++.|.+ +.. +++.|+|++|+|||||++++++... . ..+|+.+... .+...+...+.+
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 578999999999999 754 6999999999999999999998762 2 2578887643 344555555544
Q ss_pred HhC--------------C------CCc--hh-----ccccHHHHHHHHHHHhccCceEEEEecccccc-----ccccccc
Q 036761 230 KVG--------------L------FND--SW-----MKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-----AFTTVGV 277 (897)
Q Consensus 230 ~l~--------------~------~~~--~~-----~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----~~~~~~~ 277 (897)
.+. . +.. .. .......+...+.+... ++++|||||++... ++..+..
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~ 162 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALA 162 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHH
Confidence 331 0 000 00 01234444444444322 49999999996532 2222211
Q ss_pred cCCCCCCCCcEEEEecCChhHhh-h---------c-CC-CceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHH
Q 036761 278 PIPPRDKSASKVVFTTRSTEVCG-W---------M-GA-HKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVT 345 (897)
Q Consensus 278 ~l~~~~~~~s~iivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 345 (897)
.+.....+ .++|+|+|...... . . +. ...+.+.+|+.+|+.+++...+....... .. ...|+
T Consensus 163 ~~~~~~~~-~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~i~ 236 (357)
T 2fna_A 163 YAYDNLKR-IKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEVVY 236 (357)
T ss_dssp HHHHHCTT-EEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHHHH
T ss_pred HHHHcCCC-eEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHHHH
Confidence 11111123 78999999865321 1 1 11 25789999999999999988653211111 11 27899
Q ss_pred HHcCCcchHHHHHHhhhhcCCChHHHHHH-HHHHcccCCCCCCChHHHHHHHH-HhhC--CCCCccchhhhhhhccCCCC
Q 036761 346 KECGSLPLALIITGRAMACKKTPEEWRDA-IKVLQTSASEFPGLENDVLRVLK-FSYD--SLPDDTTRSCLLYCCLFPED 421 (897)
Q Consensus 346 ~~~~glPlai~~~~~~l~~~~~~~~w~~~-~~~l~~~~~~~~~~~~~v~~~l~-~sy~--~L~~~~~k~cfl~~s~fp~~ 421 (897)
+.|+|+|+++..++..+....+...|... .+.. ...+...+. +.++ .+++ ..+..+..++. +
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~l~~-~~~~~l~~la~---g 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----------KKLILKEFENFLHGREIARK-RYLNIMRTLSK---C 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHHTTCGGGHH-HHHHHHHHHTT---C
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----------HHHHHHHHHHHhhccccccH-HHHHHHHHHHc---C
Confidence 99999999999998876543333333221 1100 001111222 2221 5776 78888888887 2
Q ss_pred cccChhhHHHHHH-hcCccccCCcchhhhhHHHHHHHHHHhccccccCCceEE-echhHHHHH
Q 036761 422 YRIYKENLIDCWI-GEGFLKVTGKYEVQDKGHTILGNIVHACLLEEEGDDVVK-MHDLIRDMT 482 (897)
Q Consensus 422 ~~i~~~~li~~w~-aeg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~-mHdlv~~~a 482 (897)
. +...+....- ..|. .........+++.|++.++|...+ ..|+ .|++++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 1 3444432210 1120 011245667899999999998764 4455 578888763
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=7.1e-17 Score=174.98 Aligned_cols=221 Identities=17% Similarity=0.134 Sum_probs=141.8
Q ss_pred ceEeecccccccccccccCC--ccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc--cCccccCccCCCEee
Q 036761 522 ARRFSLMETQIRTLSAVPTC--LHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS--FPLGISVLVSLQHLD 597 (897)
Q Consensus 522 lr~L~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~--lp~~i~~L~~L~~L~ 597 (897)
.++++++++.+.. ..+..+ ++++.|+++ ++.+...++. +..+++|++|+|++| .++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~-~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCP-RSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECT-TCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcC-Cccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence 4566666665542 122334 678888888 5666666655 457899999999998 4543 777788899999999
Q ss_pred ccCCCcc-ccChhhhcCCcCcEecCCCCccccc--cChhhhhcCCccceeecccc-CCCCCCCCCCCCccccCccchhHH
Q 036761 598 LSGTAIR-ELPKELNALENLQCLNLEETHFLIT--IPRQLISSFSSLIVLRMFGV-GDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 598 L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~--lp~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
+++|.++ ..|..++.+++|++|++++|..+.. ++. .+.++++|++|++++| ... ....+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~--------------~~~~~~~ 189 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFT--------------EKHVQVA 189 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCC--------------HHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcC--------------hHHHHHH
Confidence 9999887 5677888899999999999843342 454 3788999999999887 432 1224566
Q ss_pred hcCCC-CCCEEEEEeCC--cccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEeccc
Q 036761 674 LRGLE-HLEVLSLTLNN--FQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQ 750 (897)
Q Consensus 674 l~~l~-~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~ 750 (897)
+..++ +|+.|++++|. +.. ..+.. .+..+++|++|++++|..++...+..
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~-~~l~~-------------------------~~~~~~~L~~L~l~~~~~l~~~~~~~- 242 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQK-SDLST-------------------------LVRRCPNLVHLDLSDSVMLKNDCFQE- 242 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH-HHHHH-------------------------HHHHCTTCSEEECTTCTTCCGGGGGG-
T ss_pred HHhcccCCCEEEeCCCcccCCH-HHHHH-------------------------HHhhCCCCCEEeCCCCCcCCHHHHHH-
Confidence 77888 99999998884 221 11111 22334556666665554332111111
Q ss_pred CcCCCCccEEEEeCCCCCCCC--cccccCCCccEEEEecC
Q 036761 751 PFDFRSLKKIQIYGCHRLKDL--TFLLFAPNLKSIEVSSC 788 (897)
Q Consensus 751 ~~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~c 788 (897)
...+++|++|+|++|..+... ..+..+++|+.|++++|
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 334566666666666432211 13556677777777766
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=8.4e-17 Score=177.86 Aligned_cols=247 Identities=13% Similarity=0.109 Sum_probs=134.2
Q ss_pred cccccccccc-cccCCccceeeehhccccccccch----hhhcCCCcccEEEccCCCCCc----ccCccc-------cCc
Q 036761 527 LMETQIRTLS-AVPTCLHLLTLFLIFNEELEMITS----DFFKSMPRLKVLNLSGARRMS----SFPLGI-------SVL 590 (897)
Q Consensus 527 l~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~l~~----~~~~~l~~L~~L~Ls~~~~~~----~lp~~i-------~~L 590 (897)
+....+..++ .+..+++|++|+++ ++.+..... ..+..+++|++|+|++| .+. .+|..+ ..+
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~ 93 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKC 93 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhcCCCccEEECC-CCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhC
Confidence 3333343333 34567778888888 445544322 22567788888888876 333 234333 577
Q ss_pred cCCCEeeccCCCccc-----cChhhhcCCcCcEecCCCCccccccChh---hhhcC---------CccceeeccccCCCC
Q 036761 591 VSLQHLDLSGTAIRE-----LPKELNALENLQCLNLEETHFLITIPRQ---LISSF---------SSLIVLRMFGVGDWS 653 (897)
Q Consensus 591 ~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~~---~~~~l---------~~L~~L~l~~~~~~~ 653 (897)
++|++|+|++|.++. +|..+..+++|++|+|++|.+....+.. .+..+ ++|++|++++|....
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 788888888887775 6777777888888888887652211111 12333 677777777765321
Q ss_pred CCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccH--HHHHhchhccccceeEEEeccCCCcccccccccccCCC
Q 036761 654 PNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDL--QCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHL 731 (897)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L 731 (897)
.+.......+..+++|+.|++++|.+... ..+.. ..+..+++|
T Consensus 174 -----------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~------------------------~~l~~~~~L 218 (386)
T 2ca6_A 174 -----------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL------------------------EGLAYCQEL 218 (386)
T ss_dssp -----------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH------------------------TTGGGCTTC
T ss_pred -----------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH------------------------HHhhcCCCc
Confidence 00011114566667777777777766521 11111 134455666
Q ss_pred CceeeeecCCc----cEEEecccCcCCCCccEEEEeCCCCCCCC------ccc--ccCCCccEEEEecCchhh----hhh
Q 036761 732 NRLWIHECEEL----EELEMARQPFDFRSLKKIQIYGCHRLKDL------TFL--LFAPNLKSIEVSSCFAME----EII 795 (897)
Q Consensus 732 ~~L~l~~~~~l----~~l~~~~~~~~l~~L~~L~L~~c~~l~~l------~~l--~~l~~L~~L~L~~c~~l~----~i~ 795 (897)
+.|++++|... ..++. ....+++|++|+|++| .++.. ..+ +.+++|++|+|++|..-. .++
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~--~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHH--HHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 66666665421 11111 1345666777777666 34332 122 226677777777654322 122
Q ss_pred cccccCCccccccCC-Ccccccceeeccccc
Q 036761 796 SEAKFADVPEVMANL-KPFAQLYSLRLGGLT 825 (897)
Q Consensus 796 ~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 825 (897)
. .+ ..+|+|+.|++++|+
T Consensus 296 ~------------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 296 T------------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp H------------HHHHHCTTCCEEECTTSB
T ss_pred H------------HHHhcCCCceEEEccCCc
Confidence 2 22 345677777777654
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=1.1e-16 Score=176.83 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=160.3
Q ss_pred ccccccceEeecccccccccc------cccCCccceeeehhcc--cccc-ccchhh------hcCCCcccEEEccCCCCC
Q 036761 516 VREWENARRFSLMETQIRTLS------AVPTCLHLLTLFLIFN--EELE-MITSDF------FKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~------~~~~~~~L~~L~l~~~--~~l~-~l~~~~------~~~l~~L~~L~Ls~~~~~ 580 (897)
+..++++++|++++|.+.... .+..+++|++|+++++ +.+. .+|..+ +..+++|++|+|++| .+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AF 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cC
Confidence 345678999999999887631 3568999999999943 2222 334332 478999999999999 56
Q ss_pred cc-----cCccccCccCCCEeeccCCCcc-----ccChhhhcC---------CcCcEecCCCCccc-cccCh--hhhhcC
Q 036761 581 SS-----FPLGISVLVSLQHLDLSGTAIR-----ELPKELNAL---------ENLQCLNLEETHFL-ITIPR--QLISSF 638 (897)
Q Consensus 581 ~~-----lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L---------~~L~~L~L~~~~~l-~~lp~--~~~~~l 638 (897)
+. +|..+..+++|++|+|++|.++ .++..+..+ ++|++|++++|.+. ..+|. ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 54 7888899999999999999987 344445555 89999999999864 34553 347789
Q ss_pred CccceeeccccCCCCCCCCCCCCccccCccchhH-HhcCCCCCCEEEEEeCCcccHH--HHHhchhccccceeEEEeccC
Q 036761 639 SSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVE-ALRGLEHLEVLSLTLNNFQDLQ--CVLKSKELRRCTQALYLYSFK 715 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~ 715 (897)
++|++|++++|.+.. .+...... .+..+++|+.|++++|.+.... .+.
T Consensus 187 ~~L~~L~L~~n~l~~-----------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~------------------ 237 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRP-----------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA------------------ 237 (386)
T ss_dssp TTCCEEECCSSCCCH-----------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH------------------
T ss_pred CCcCEEECcCCCCCH-----------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH------------------
Confidence 999999999986431 00111233 7888999999999999875321 111
Q ss_pred CCcccccccccccCCCCceeeeecCCccE----EEecccCcCCCCccEEEEeCCCCCCC-----Cc-cc-ccCCCccEEE
Q 036761 716 RSEPLDVSALAGLKHLNRLWIHECEELEE----LEMARQPFDFRSLKKIQIYGCHRLKD-----LT-FL-LFAPNLKSIE 784 (897)
Q Consensus 716 ~~~~~~~~~l~~l~~L~~L~l~~~~~l~~----l~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l-~~l~~L~~L~ 784 (897)
..+..+++|++|++++|..... ++.......+++|++|+|++| .++. ++ .+ ..+++|++|+
T Consensus 238 -------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 238 -------IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp -------HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred -------HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEE
Confidence 1344556677777766642211 000000123677888888877 4444 44 23 4578888888
Q ss_pred EecCch
Q 036761 785 VSSCFA 790 (897)
Q Consensus 785 L~~c~~ 790 (897)
+++|..
T Consensus 310 l~~N~l 315 (386)
T 2ca6_A 310 LNGNRF 315 (386)
T ss_dssp CTTSBS
T ss_pred ccCCcC
Confidence 887643
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=4.5e-16 Score=164.16 Aligned_cols=169 Identities=22% Similarity=0.301 Sum_probs=101.7
Q ss_pred cCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccce
Q 036761 564 KSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIV 643 (897)
Q Consensus 564 ~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~ 643 (897)
..+++|++|++++| .++.+| .+..+++|++|++++|.++.+|. +.++++|++|++++|.+ ..+|. +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSS--LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCC-CcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChh--hccCCCCCE
Confidence 44566666666666 555554 35666666666666666666655 66666666666666653 44443 666666666
Q ss_pred eeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccc
Q 036761 644 LRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVS 723 (897)
Q Consensus 644 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 723 (897)
|++++|.... ...+..+++|+.|++++|.+..+ .
T Consensus 117 L~L~~n~i~~-----------------~~~l~~l~~L~~L~l~~n~l~~~-----------------------------~ 150 (291)
T 1h6t_A 117 LSLEHNGISD-----------------INGLVHLPQLESLYLGNNKITDI-----------------------------T 150 (291)
T ss_dssp EECTTSCCCC-----------------CGGGGGCTTCCEEECCSSCCCCC-----------------------------G
T ss_pred EECCCCcCCC-----------------ChhhcCCCCCCEEEccCCcCCcc-----------------------------h
Confidence 6666655331 12355566666666666554321 1
Q ss_pred cccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecCc
Q 036761 724 ALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSCF 789 (897)
Q Consensus 724 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~ 789 (897)
.+..+++|+.|++++|. ++.+++ ...+++|+.|+|++| .++.++.+..+++|+.|++++|+
T Consensus 151 ~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEEccCCc-cccchh---hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 24455666666666663 332222 345677777777777 56666667777778888887754
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=4.3e-15 Score=165.83 Aligned_cols=306 Identities=11% Similarity=0.050 Sum_probs=182.3
Q ss_pred CCCccchHHHHHHHHHh-cc------CCceEEEE--EcCCCCcHHHHHHHHHhcccCC---CCC-CEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCL-VE------EPVGIVGL--YGMGGVGKTTLLTHLHNKFLGQ---GDF-DFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~------~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~f-~~~~wv~~~~~~~~~ 221 (897)
..++||++++++|.+++ .. ...+.+.| +|++|+||||||+.+++..... ..| ..++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 67999999999999888 42 24567777 9999999999999999876321 112 246788877777889
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc--------ccccccccC---CCCC--CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV--------AFTTVGVPI---PPRD--KSA 286 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~--------~~~~~~~~l---~~~~--~~~ 286 (897)
.++..++.+++..... ...+..+....+.+.+. +++++|||||++... .+..+...+ +... ..
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~- 179 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR- 179 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB-
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce-
Confidence 9999999998764321 12344556666666665 679999999997532 222221111 1111 22
Q ss_pred cEEEEecCChhHhhhc---------CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcC------Cc
Q 036761 287 SKVVFTTRSTEVCGWM---------GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECG------SL 351 (897)
Q Consensus 287 s~iivTtR~~~v~~~~---------~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------gl 351 (897)
..||+||+...+...+ .....+.+++++.++++++|...+.... ....--.+....|++.|+ |.
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCCc
Confidence 5688888765532111 1122399999999999999987643111 011112456888999999 99
Q ss_pred chHHHHHHhhhh-----cC---CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCC--CC
Q 036761 352 PLALIITGRAMA-----CK---KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFP--ED 421 (897)
Q Consensus 352 Plai~~~~~~l~-----~~---~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~ 421 (897)
|..+..+..... .. -+.+.+..+...... ...+.-++..||+ +.+.++..++.+. .+
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhcCC
Confidence 976655543221 11 123334333322110 1233446678887 7888888777643 23
Q ss_pred cccChhhHHHHHHhcC--ccccCCcchhhhhHHHHHHHHHHhcccccc-----CCceEEechhH
Q 036761 422 YRIYKENLIDCWIGEG--FLKVTGKYEVQDKGHTILGNIVHACLLEEE-----GDDVVKMHDLI 478 (897)
Q Consensus 422 ~~i~~~~li~~w~aeg--~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~~mHdlv 478 (897)
..+...++...+.... .... ..........+++.|.+.+++... ....|++|++.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV--KPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC--CCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455555554442100 0000 001134456789999999999774 22345555544
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4.6e-16 Score=179.97 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=64.0
Q ss_pred ceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCC
Q 036761 522 ARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 522 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~ 601 (897)
+..+.+..+.+..+.....+++|+.|+++ ++.+..++. +..+++|++|+|++| .+..+|. ++.+++|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCT-TCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECc-CCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 34444444444444444555555666655 444555542 555566666666655 4444443 555556666666666
Q ss_pred CccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 602 AIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 602 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
.|+.+| .+..+++|++|+|++|.+ ..++. +..|++|+.|++++|.
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~--l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGI-SDING--LVHLPQLESLYLGNNK 142 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCC-CCCGG--GGGCTTCSEEECCSSC
T ss_pred CCCCCh-hhccCCCCCEEEecCCCC-CCCcc--ccCCCccCEEECCCCc
Confidence 555554 455555566666655553 33432 5555555555555544
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=3e-15 Score=157.83 Aligned_cols=151 Identities=22% Similarity=0.303 Sum_probs=108.4
Q ss_pred ccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCE
Q 036761 516 VREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQH 595 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~ 595 (897)
...+.+++.|++.+|.+..++.+..+++|++|+++ ++.+..+++ +..+++|++|++++| .++.+| .++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEcc-CCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCE
Confidence 34456778888888877777777777888888887 666777665 777888888888887 666665 4777788888
Q ss_pred eeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhc
Q 036761 596 LDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALR 675 (897)
Q Consensus 596 L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 675 (897)
|++++|.++.++ .+..+++|++|++++|.+ ..++. +..+++|++|++++|.... ... +.
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~L~~N~l~~----------------~~~-l~ 175 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISD----------------IVP-LA 175 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCCC----------------CGG-GT
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcC-Ccchh--hccCCCCCEEEccCCcccc----------------chh-hc
Confidence 888888777763 577778888888888764 55542 7778888888887776432 111 66
Q ss_pred CCCCCCEEEEEeCCccc
Q 036761 676 GLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~~ 692 (897)
.+++|+.|++++|.+..
T Consensus 176 ~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TCTTCCEEECCSSCCCB
T ss_pred CCCccCEEECCCCcCCC
Confidence 77777777777776543
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=3.9e-16 Score=166.73 Aligned_cols=203 Identities=15% Similarity=0.107 Sum_probs=113.3
Q ss_pred CCcccEEEccCCCCCcccCccc--cCccCCCEeeccCCCcccc-C----hhhhcCCcCcEecCCCCccccccChhhhhcC
Q 036761 566 MPRLKVLNLSGARRMSSFPLGI--SVLVSLQHLDLSGTAIREL-P----KELNALENLQCLNLEETHFLITIPRQLISSF 638 (897)
Q Consensus 566 l~~L~~L~Ls~~~~~~~lp~~i--~~L~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l 638 (897)
+++|++|++++|...+..|..+ +.+++|++|++++|.++.. | ..+..+++|++|++++|.+ ..++...++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccC
Confidence 4568888888884344566666 7788888888888877742 2 2345678888888888875 55554447788
Q ss_pred CccceeeccccCCCCCCCCCCCCccccCccch--hHHhcCCCCCCEEEEEeCCcccHHHHHhc-hhccccceeEEEeccC
Q 036761 639 SSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLL--VEALRGLEHLEVLSLTLNNFQDLQCVLKS-KELRRCTQALYLYSFK 715 (897)
Q Consensus 639 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~L~~~~ 715 (897)
++|++|++++|.... .... ...+..+++|++|++++|.+..++..... ....++|+.|+|++|.
T Consensus 169 ~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~ 235 (310)
T 4glp_A 169 PALTSLDLSDNPGLG-------------ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS 235 (310)
T ss_dssp TTCCEEECCSCTTCH-------------HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred CCCCEEECCCCCCcc-------------chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence 888888888775321 0001 11235677888888888887665543221 1222345555555444
Q ss_pred CCcccc--cccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCcccccCCCccEEEEecC
Q 036761 716 RSEPLD--VSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLTFLLFAPNLKSIEVSSC 788 (897)
Q Consensus 716 ~~~~~~--~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c 788 (897)
.....+ ...+..+++|++|++++|. ++.++. . .+++|+.|+|++| .++.+|.+..+++|+.|++++|
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-~---~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK-G---LPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS-C---CCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred CCccchhhHHhccCcCcCCEEECCCCC-CCchhh-h---hcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence 222111 1112222456666665553 222211 1 1245555666555 4444444445555555555554
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=5.9e-15 Score=145.97 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=128.7
Q ss_pred cccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc-ccCccccCccCCCE
Q 036761 517 REWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS-SFPLGISVLVSLQH 595 (897)
Q Consensus 517 ~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~-~lp~~i~~L~~L~~ 595 (897)
..+.++++|++++|.+..++.+..+++|++|+++ ++.+..++ .+..+++|++|++++| .++ ..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~n~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTIN-NIHATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEE-SCCCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEcc-CCCCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 4567899999999999999988999999999999 55776665 3889999999999999 555 47888999999999
Q ss_pred eeccCCCccc-cChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHh
Q 036761 596 LDLSGTAIRE-LPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEAL 674 (897)
Q Consensus 596 L~L~~~~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (897)
|++++|.++. .|..++.+++|++|++++|..+..+|. +..+++|++|++++|.... . ..+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~----------------~-~~l 177 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD----------------Y-RGI 177 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC----------------C-TTG
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC----------------h-HHh
Confidence 9999999985 678899999999999999985678874 8999999999999987543 1 257
Q ss_pred cCCCCCCEEEEEeCCccc
Q 036761 675 RGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~ 692 (897)
..+++|+.|++++|.+..
T Consensus 178 ~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGCSSCCEEEECBC----
T ss_pred ccCCCCCEEEeeCcccCC
Confidence 889999999999988643
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=9.8e-17 Score=188.56 Aligned_cols=302 Identities=15% Similarity=0.142 Sum_probs=151.3
Q ss_pred ccccceEeeccccc--c--cccccc-cCCccceeeehhccccccccchhhhcCCCcccEEEccCCC------CCcccCcc
Q 036761 518 EWENARRFSLMETQ--I--RTLSAV-PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGAR------RMSSFPLG 586 (897)
Q Consensus 518 ~~~~lr~L~l~~~~--~--~~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~------~~~~lp~~ 586 (897)
.+.+++.|++..+. + ..+..+ ..+++|++|+++++..+..++. .+..+++|++|+++++. .+..++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 45689999998876 2 112222 4579999999997666666554 47889999999976652 12334445
Q ss_pred ccCccCCCEe-eccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCcccc
Q 036761 587 ISVLVSLQHL-DLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFS 665 (897)
Q Consensus 587 i~~L~~L~~L-~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 665 (897)
+.++++|+.| .+.+.....+|..+..+++|++|++++|.+.......++.++++|++|++.+|. .
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~------------- 326 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI-E------------- 326 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG-H-------------
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc-C-------------
Confidence 6666666666 444444445555555666677777766653222222234566666666666541 0
Q ss_pred CccchhHHhcCCCCCCEEEEEe---------CCcccHHHHHhchhccccceeEEEeccCCCccccccccc-ccCCCCcee
Q 036761 666 GGDLLVEALRGLEHLEVLSLTL---------NNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALA-GLKHLNRLW 735 (897)
Q Consensus 666 ~~~~~~~~l~~l~~L~~L~l~~---------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~ 735 (897)
..........+++|+.|++.. +.++. .........+++|+.|.+..+. .+......+. .+++|+.|+
T Consensus 327 -~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~-~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~ 403 (594)
T 2p1m_B 327 -DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE-QGLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFR 403 (594)
T ss_dssp -HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH-HHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEE
T ss_pred -HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH-HHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeE
Confidence 111222223456666666632 12211 1111111223456666443332 2222222222 356666666
Q ss_pred ee-----ecCCccEEEec----ccCcCCCCccEEEEeCCCCCCC--Cccccc-CCCccEEEEecCchhhhhhcccccCCc
Q 036761 736 IH-----ECEELEELEMA----RQPFDFRSLKKIQIYGCHRLKD--LTFLLF-APNLKSIEVSSCFAMEEIISEAKFADV 803 (897)
Q Consensus 736 l~-----~~~~l~~l~~~----~~~~~l~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~c~~l~~i~~~~~~~~~ 803 (897)
++ +|..++..+.. .....+++|+.|+|++ .+++ ++.+.. +++|+.|+|++|......+.
T Consensus 404 L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~------- 474 (594)
T 2p1m_B 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH------- 474 (594)
T ss_dssp EEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-------
T ss_pred eecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-------
Confidence 66 33344321110 0023455666666644 2222 112222 56666666666542111111
Q ss_pred cccccCCCcccccceeeccccccccccc-CCCCCCCCcceeeecCCcc
Q 036761 804 PEVMANLKPFAQLYSLRLGGLTVLKSIY-KRPLPFPCLRDLTVNSCDE 850 (897)
Q Consensus 804 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~i~~C~~ 850 (897)
.....+++|+.|++++|+.-.... .....+++|+.|++++|+.
T Consensus 475 ----~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 ----HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ----HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred ----HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 011345666666666665411111 1223356666666666653
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=1e-14 Score=150.40 Aligned_cols=127 Identities=17% Similarity=0.230 Sum_probs=81.1
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeecc
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLS 599 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~ 599 (897)
..++++++++.+..+|... .++++.|+++ ++.+..+++..|.++++|++|+|++| .++.++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 3456666666666665421 2567777777 55666666666777777777777777 444433 346677777777777
Q ss_pred CCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 600 GTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 600 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
+|.++.+|. .+..+++|++|++++|.+ ..+|...+..+++|++|++++|..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l 143 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQL 143 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcC
Confidence 777776654 356677777777777753 556655556666666666666554
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=2.7e-15 Score=163.99 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=138.3
Q ss_pred ecccccccc-cccccC-Cccceeeehhccccccccch----hhhcCCC-cccEEEccCCCCCccc-CccccCc-----cC
Q 036761 526 SLMETQIRT-LSAVPT-CLHLLTLFLIFNEELEMITS----DFFKSMP-RLKVLNLSGARRMSSF-PLGISVL-----VS 592 (897)
Q Consensus 526 ~l~~~~~~~-l~~~~~-~~~L~~L~l~~~~~l~~l~~----~~~~~l~-~L~~L~Ls~~~~~~~l-p~~i~~L-----~~ 592 (897)
.++.|.+.. +|.+.. .++|++|+++ ++.++..+. ..|..++ +|++|+|++| .++.. +..+..+ ++
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccchHHHHHHHhCCCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCC
Confidence 344555543 233333 3447777777 555666665 5566777 7777777777 45443 4444443 77
Q ss_pred CCEeeccCCCccccChh-----hhcC-CcCcEecCCCCccccccChhhhh----c-CCccceeeccccCCCCCCCCCCCC
Q 036761 593 LQHLDLSGTAIRELPKE-----LNAL-ENLQCLNLEETHFLITIPRQLIS----S-FSSLIVLRMFGVGDWSPNGKKNDS 661 (897)
Q Consensus 593 L~~L~L~~~~i~~lp~~-----i~~L-~~L~~L~L~~~~~l~~lp~~~~~----~-l~~L~~L~l~~~~~~~~~~~~~~~ 661 (897)
|++|+|++|.++..+.. +..+ ++|++|++++|.+ ...+...+. . .++|++|++++|....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------- 152 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------- 152 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------
Confidence 77777777777754432 4444 6777777777764 444432222 2 2577777777765321
Q ss_pred ccccCccchhHHhcCCC-CCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCccccccccccc-CCCCceeeeec
Q 036761 662 DLFSGGDLLVEALRGLE-HLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGL-KHLNRLWIHEC 739 (897)
Q Consensus 662 ~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 739 (897)
.+.......+..++ +|+.|++++|.+........ ...+..+ ++|++|++++|
T Consensus 153 ---~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l-----------------------~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 153 ---KSSDELIQILAAIPANVNSLNLRGNNLASKNCAEL-----------------------AKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp ---SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH-----------------------HHHHHTSCTTCCEEECTTS
T ss_pred ---HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHH-----------------------HHHHHhCCCCCCEEECCCC
Confidence 01112334445554 67777777766543211000 0122333 36777777766
Q ss_pred CCccEEEe----cccCcCCCCccEEEEeCCCCCCCCcc------cccCCCccEEEEecCchhhhhhcccccCCccccccC
Q 036761 740 EELEELEM----ARQPFDFRSLKKIQIYGCHRLKDLTF------LLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMAN 809 (897)
Q Consensus 740 ~~l~~l~~----~~~~~~l~~L~~L~L~~c~~l~~l~~------l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 809 (897)
. +..... .......++|++|+|++| .++..+. +..+++|+.|++++|. +..+.. .....+...
T Consensus 207 ~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~----~~~~~l~~~ 279 (362)
T 3goz_A 207 L-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK----EQCKALGAA 279 (362)
T ss_dssp C-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH----HHHHHHHTT
T ss_pred C-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH----HHHHHHHHH
Confidence 3 221000 000112357888888887 5555432 3456888888888864 111110 000112225
Q ss_pred CCcccccceeeccccc
Q 036761 810 LKPFAQLYSLRLGGLT 825 (897)
Q Consensus 810 ~~~~~~L~~L~l~~~~ 825 (897)
+..+++|+.|++++++
T Consensus 280 ~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 280 FPNIQKIILVDKNGKE 295 (362)
T ss_dssp STTCCEEEEECTTSCB
T ss_pred hccCCceEEEecCCCc
Confidence 6677888888888754
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=2.1e-14 Score=148.06 Aligned_cols=171 Identities=23% Similarity=0.313 Sum_probs=142.3
Q ss_pred EEEcCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+..+...|.. -..+++.|++++|.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .+
T Consensus 19 l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp EECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred EecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence 44445555555532 22589999999999988764 6889999999999 77888898888999999999999999 67
Q ss_pred cccC-ccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCC
Q 036761 581 SSFP-LGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKK 658 (897)
Q Consensus 581 ~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 658 (897)
+.+| ..+..+++|++|+|++|.|+.+|.. +..+++|++|++++|.+ ..+|.+.+..+++|++|++++|.....
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---- 170 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSV---- 170 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC----
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCcc----
Confidence 7766 4578999999999999999999876 68999999999999985 778876689999999999999876542
Q ss_pred CCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 659 NDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
.+..+..+++|+.|++++|.+..
T Consensus 171 -----------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 -----------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -----------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred -----------CHHHHhCCCCCCEEEeeCCceeC
Confidence 34467889999999999998754
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.8e-15 Score=173.47 Aligned_cols=172 Identities=22% Similarity=0.284 Sum_probs=145.0
Q ss_pred CcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCC
Q 036761 514 PNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSL 593 (897)
Q Consensus 514 ~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L 593 (897)
.....+.+++.|++.+|.+..++.+..+++|+.|+|+ ++.+..+++ +..+++|++|+|++| .+..+| .+..+++|
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKL 111 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTC
T ss_pred cchhcCCCCCEEECcCCCCCCChHHccCCCCCEEEee-CCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCC
Confidence 3455678899999999999999999999999999999 777888887 889999999999999 788877 79999999
Q ss_pred CEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHH
Q 036761 594 QHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEA 673 (897)
Q Consensus 594 ~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (897)
++|+|++|.|+.+| .+..|++|+.|+|++|.+ ..++. +..+++|+.|++++|.+.. .+.
T Consensus 112 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l-~~l~~--l~~l~~L~~L~Ls~N~l~~----------------~~~- 170 (605)
T 1m9s_A 112 KSLSLEHNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISD----------------IVP- 170 (605)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GGSCTTCSEEECCSSCCCC----------------CGG-
T ss_pred CEEEecCCCCCCCc-cccCCCccCEEECCCCcc-CCchh--hcccCCCCEEECcCCcCCC----------------chh-
Confidence 99999999999885 689999999999999985 66643 8999999999999987543 222
Q ss_pred hcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccC
Q 036761 674 LRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFK 715 (897)
Q Consensus 674 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 715 (897)
+..+++|+.|+|++|.+..++. ...+++|+.|+|++|.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~----l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG----GTTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCCCCCCChH----HccCCCCCEEEccCCc
Confidence 8899999999999998877532 2334577777777665
No 107
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.53 E-value=3e-14 Score=124.63 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=73.7
Q ss_pred eecchHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHH
Q 036761 9 ISCDGAIFNRCLDCFLGEAAYVRNLQENVEALKYELERLIAIKGDVEDRVRNAERQQMMTRLNQVQRWLKRVDAVTAEAN 88 (897)
Q Consensus 9 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~v~~wl~~~~~~~~~~e 88 (897)
|+++. +++||++++.+|+.++.+++++++.|+++|+.|+++|.+ |+.+.....++.++.|+++||+++||+|
T Consensus 1 a~v~~-ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISN-LIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 34566 999999999999999999999999999999999999988 6665101468899999999999999999
Q ss_pred HHHHhhhhhhhh
Q 036761 89 ELIRDGSQEIEK 100 (897)
Q Consensus 89 d~ld~~~~~~~~ 100 (897)
|++|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=1.4e-14 Score=158.20 Aligned_cols=159 Identities=18% Similarity=0.206 Sum_probs=116.8
Q ss_pred ccceEeecccccccccc------cccCCc-cceeeehhccccccccchhhhcCC-----CcccEEEccCCCCCccc-Ccc
Q 036761 520 ENARRFSLMETQIRTLS------AVPTCL-HLLTLFLIFNEELEMITSDFFKSM-----PRLKVLNLSGARRMSSF-PLG 586 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~------~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~l-----~~L~~L~Ls~~~~~~~l-p~~ 586 (897)
.++++|++++|.+...+ .+..++ +|++|+++ ++.++......+..+ ++|++|+|++| .++.. +..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS-GNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC-SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc-CCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 46999999999998764 246677 89999999 667877765556554 99999999999 66644 333
Q ss_pred ----ccCc-cCCCEeeccCCCccccChh-----hhc-CCcCcEecCCCCcccc----ccChhhhhcCC-ccceeeccccC
Q 036761 587 ----ISVL-VSLQHLDLSGTAIRELPKE-----LNA-LENLQCLNLEETHFLI----TIPRQLISSFS-SLIVLRMFGVG 650 (897)
Q Consensus 587 ----i~~L-~~L~~L~L~~~~i~~lp~~-----i~~-L~~L~~L~L~~~~~l~----~lp~~~~~~l~-~L~~L~l~~~~ 650 (897)
+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+.. .++.. +..++ +|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCCC
Confidence 4444 8999999999999876642 334 3699999999998643 23332 45565 99999999987
Q ss_pred CCCCCCCCCCCccccCccchhHHhcCC-CCCCEEEEEeCCccc
Q 036761 651 DWSPNGKKNDSDLFSGGDLLVEALRGL-EHLEVLSLTLNNFQD 692 (897)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 692 (897)
.... +.......+..+ ++|+.|++++|.+..
T Consensus 179 l~~~-----------~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 179 LASK-----------NCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGGS-----------CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred Cchh-----------hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 5421 111233456666 599999999998765
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=4.2e-14 Score=142.30 Aligned_cols=151 Identities=20% Similarity=0.256 Sum_probs=123.5
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~ 601 (897)
+.++..++.+..+|... .++|+.|+++ ++.+..+++..|..+++|++|+|++| .++.+ |..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 45777778888777532 3789999999 77888888877999999999999999 66655 778999999999999999
Q ss_pred CccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 602 AIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 602 ~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
.|+.+|.. +..+++|++|+|++|.+ ..++...+..+++|++|++++|....+ ....+..+++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L 154 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTI---------------AKGTFSPLRAI 154 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCC-CEeCHHHcCCCCCCCEEECCCCcCCEE---------------CHHHHhCCCCC
Confidence 99999876 68899999999999985 666555689999999999999876543 33457788999
Q ss_pred CEEEEEeCCccc
Q 036761 681 EVLSLTLNNFQD 692 (897)
Q Consensus 681 ~~L~l~~~~~~~ 692 (897)
+.|++++|.+..
T Consensus 155 ~~L~L~~N~~~c 166 (220)
T 2v9t_B 155 QTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCEEC
T ss_pred CEEEeCCCCcCC
Confidence 999999988753
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=154.29 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=98.1
Q ss_pred Cccceeeehhccccccccchhhh--cCCCcccEEEccCCCCCcc-cC----ccccCccCCCEeeccCCCccccC-hhhhc
Q 036761 541 CLHLLTLFLIFNEELEMITSDFF--KSMPRLKVLNLSGARRMSS-FP----LGISVLVSLQHLDLSGTAIRELP-KELNA 612 (897)
Q Consensus 541 ~~~L~~L~l~~~~~l~~l~~~~~--~~l~~L~~L~Ls~~~~~~~-lp----~~i~~L~~L~~L~L~~~~i~~lp-~~i~~ 612 (897)
+++|++|+++ ++.+....+..+ ..+++|++|+|++| .++. .| ..+..+++|++|++++|.++.+| ..++.
T Consensus 90 ~~~L~~L~l~-~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLE-DLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEE-SCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred cCceeEEEee-CCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 3445555555 333332222223 55555555555555 3332 11 12334555555666555555443 34555
Q ss_pred CCcCcEecCCCCccccc--cCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhH-HhcCCCCCCEEEEEeC
Q 036761 613 LENLQCLNLEETHFLIT--IPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVE-ALRGLEHLEVLSLTLN 688 (897)
Q Consensus 613 L~~L~~L~L~~~~~l~~--lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 688 (897)
+++|++|++++|.+.+. ++. ..+..+++|++|++++|..... ...+. .++.+++|++|++++|
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------------~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-------------TGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-------------HHHHHHHHHHTCCCSSEECTTS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-------------HHHHHHHHhcCCCCCEEECCCC
Confidence 55556666555543221 111 1124555555555555543210 00111 1345555555666555
Q ss_pred CcccH-HHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCC
Q 036761 689 NFQDL-QCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCH 766 (897)
Q Consensus 689 ~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~ 766 (897)
.+... +.........++|+.|++++|... .++. .+ .++|+.|++++|. ++.++. ...+++|+.|+|++|+
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSSTT
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCCC
Confidence 55443 111111111235666666655432 2221 22 2688899998874 443322 4568899999999883
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.51 E-value=6.1e-14 Score=145.33 Aligned_cols=151 Identities=20% Similarity=0.283 Sum_probs=109.4
Q ss_pred cccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 515 NVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
.+..+.+++.|++.+|.+..++.+..+++|++|+++ ++.+..+++ +..+++|++|+|++| .++.+|... . .+|+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~-~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~ 109 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS-HNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLS 109 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCC
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECC-CCccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-Cccc
Confidence 344566778888888887777777777888888887 666777776 777888888888888 677666433 3 7788
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHh
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEAL 674 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (897)
+|++++|.++.+| .+..+++|++|++++|.+ ..+|. +..+++|++|++++|.... . ..+
T Consensus 110 ~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~----------------~-~~l 168 (263)
T 1xeu_A 110 RLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITN----------------T-GGL 168 (263)
T ss_dssp EEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCB----------------C-TTS
T ss_pred EEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcc----------------h-HHh
Confidence 8888888887775 577788888888888874 55653 7778888888887776432 1 446
Q ss_pred cCCCCCCEEEEEeCCccc
Q 036761 675 RGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~ 692 (897)
..+++|+.|++++|.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 677778888888776653
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=2.4e-14 Score=148.43 Aligned_cols=166 Identities=20% Similarity=0.210 Sum_probs=112.2
Q ss_pred cccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeec
Q 036761 519 WENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDL 598 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 598 (897)
+.++..+.+..+.+.+++.+..+++|++|+++ ++.+..++. +..+++|++|+|++| .++.+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGD-NSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECT-TSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECc-CCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 34566666777777777666677777777777 556666662 677777777777777 6666665 777777777777
Q ss_pred cCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCC
Q 036761 599 SGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLE 678 (897)
Q Consensus 599 ~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 678 (897)
++|.++.+|.... ++|++|++++|.+ ..++. +..+++|++|++++|.... . ..+..++
T Consensus 93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l-~~~~~--l~~l~~L~~L~Ls~N~i~~----------------~-~~l~~l~ 150 (263)
T 1xeu_A 93 NRNRLKNLNGIPS--ACLSRLFLDNNEL-RDTDS--LIHLKNLEILSIRNNKLKS----------------I-VMLGFLS 150 (263)
T ss_dssp CSSCCSCCTTCCC--SSCCEEECCSSCC-SBSGG--GTTCTTCCEEECTTSCCCB----------------C-GGGGGCT
T ss_pred CCCccCCcCcccc--CcccEEEccCCcc-CCChh--hcCcccccEEECCCCcCCC----------------C-hHHccCC
Confidence 7777777765333 7777777777764 55553 6777777777777765432 1 2466677
Q ss_pred CCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecC
Q 036761 679 HLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECE 740 (897)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 740 (897)
+|+.|++++|.+... ..+..+++|+.|++++|+
T Consensus 151 ~L~~L~L~~N~i~~~-----------------------------~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 KLEVLDLHGNEITNT-----------------------------GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBC-----------------------------TTSTTCCCCCEEEEEEEE
T ss_pred CCCEEECCCCcCcch-----------------------------HHhccCCCCCEEeCCCCc
Confidence 777777776665432 235566778888887774
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=138.77 Aligned_cols=151 Identities=17% Similarity=0.273 Sum_probs=121.3
Q ss_pred eEeecccccccccccccCCccceeeehhcccccccc-chhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMI-TSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSG 600 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~ 600 (897)
+.++++++.+..+|.. -.+.+++|+++ ++.+..+ +...|..+++|++|+|++| .++.++. .+.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 4788888888888752 24567899999 6778777 4466889999999999999 6776654 789999999999999
Q ss_pred CCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 601 TAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 601 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
|.++.+|.. +..+++|++|++++|.+ ..+++..+..+++|++|++++|..... .+..+..+++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~ 154 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTV---------------APGAFDTLHS 154 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCC-CCBCTTSSTTCTTCSEEECTTSCCCCB---------------CTTTTTTCTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcC-CeECHhHcCCCccCCEEECCCCcCCEE---------------CHHHhcCCCC
Confidence 999988765 88999999999999985 555444588999999999999876532 3566788999
Q ss_pred CCEEEEEeCCccc
Q 036761 680 LEVLSLTLNNFQD 692 (897)
Q Consensus 680 L~~L~l~~~~~~~ 692 (897)
|+.|++++|.+..
T Consensus 155 L~~L~L~~N~l~c 167 (220)
T 2v70_A 155 LSTLNLLANPFNC 167 (220)
T ss_dssp CCEEECCSCCEEC
T ss_pred CCEEEecCcCCcC
Confidence 9999999988753
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1e-13 Score=158.36 Aligned_cols=38 Identities=11% Similarity=-0.059 Sum_probs=26.8
Q ss_pred ccEEEEeCCCCCCCCc-ccccCCCccEEEEecCchhhhhh
Q 036761 757 LKKIQIYGCHRLKDLT-FLLFAPNLKSIEVSSCFAMEEII 795 (897)
Q Consensus 757 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~i~ 795 (897)
|+.|+|++| .++.+| .+..+++|+.|+|++|+....++
T Consensus 209 L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 209 EIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 388888887 566666 36668888888888876544443
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=2.2e-13 Score=138.03 Aligned_cols=150 Identities=21% Similarity=0.263 Sum_probs=112.9
Q ss_pred ceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccC
Q 036761 522 ARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSG 600 (897)
Q Consensus 522 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~ 600 (897)
.+.++.+++.+..+|.. -.++|++|+++ ++.+..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 34566777777777642 23788888888 66777777667888888888888888 67777644 57888888888888
Q ss_pred CCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCC
Q 036761 601 TAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEH 679 (897)
Q Consensus 601 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 679 (897)
|.|+.+|.. +..+++|++|++++|.+ ..+|.. +..+++|++|++++|....+ ....+..+++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~ 160 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSI---------------PHGAFDRLSS 160 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCC---------------CTTTTTTCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCcc---------------CHHHHhCCCC
Confidence 888888765 57888888888888874 678876 78888888888888765432 2345677888
Q ss_pred CCEEEEEeCCcc
Q 036761 680 LEVLSLTLNNFQ 691 (897)
Q Consensus 680 L~~L~l~~~~~~ 691 (897)
|+.|++.+|.+.
T Consensus 161 L~~L~l~~N~~~ 172 (229)
T 3e6j_A 161 LTHAYLFGNPWD 172 (229)
T ss_dssp CCEEECTTSCBC
T ss_pred CCEEEeeCCCcc
Confidence 888888888764
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=3.2e-13 Score=136.78 Aligned_cols=142 Identities=25% Similarity=0.382 Sum_probs=122.0
Q ss_pred cCCCccCCCcccccccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc
Q 036761 506 TGAGLTKPPNVREWENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF 583 (897)
Q Consensus 506 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l 583 (897)
.+..+...|.. -..+++.|++++|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|+|++| .++.+
T Consensus 27 ~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLGTN-QLTVL 103 (229)
T ss_dssp TTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred cCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECCCC-cCCcc
Confidence 34444444432 23689999999999998743 6789999999999 77899999888999999999999999 77777
Q ss_pred Ccc-ccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 584 PLG-ISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 584 p~~-i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
|.. +..+++|++|+|++|+|+.+|..+..+++|++|++++|.+ ..+|...+..+++|++|++.+|..
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCc
Confidence 655 6899999999999999999999999999999999999985 778877789999999999998763
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.3e-13 Score=137.62 Aligned_cols=149 Identities=21% Similarity=0.295 Sum_probs=76.4
Q ss_pred eecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccCCCc
Q 036761 525 FSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSGTAI 603 (897)
Q Consensus 525 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~~i 603 (897)
+...++.+..+|.. ..++|++|+++ ++.+..++...|..+++|++|++++| .++.+|.. +..+++|++|++++|.+
T Consensus 12 v~c~~~~l~~~p~~-~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPTG-IPAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSCCSC-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCCCCC-CCCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 33334444444321 23455555555 44455555555555666666666655 44444432 35555666666666655
Q ss_pred cccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCE
Q 036761 604 RELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEV 682 (897)
Q Consensus 604 ~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 682 (897)
+.+|.. +..+++|++|++++|.+ ..+|...+..+++|++|+++++..... ....+..+++|+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSV---------------PDGVFDRLTSLQY 152 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCE
T ss_pred CccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCcccee---------------CHHHhccCCCccE
Confidence 555543 45556666666665553 444444455556666666655543321 1222445556666
Q ss_pred EEEEeCCccc
Q 036761 683 LSLTLNNFQD 692 (897)
Q Consensus 683 L~l~~~~~~~ 692 (897)
|++++|.+..
T Consensus 153 L~l~~N~~~~ 162 (208)
T 2o6s_A 153 IWLHDNPWDC 162 (208)
T ss_dssp EECCSCCBCC
T ss_pred EEecCCCeec
Confidence 6666555443
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=6.6e-13 Score=133.52 Aligned_cols=145 Identities=24% Similarity=0.326 Sum_probs=122.3
Q ss_pred EEEcCCCccCCCcccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCC
Q 036761 503 LVYTGAGLTKPPNVREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRM 580 (897)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~ 580 (897)
+...+.++..+|.. -..+++.|++.+|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++| .+
T Consensus 16 v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-KI 92 (220)
T ss_dssp EECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred EEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC-cC
Confidence 34445555555542 2258999999999999887 47889999999999 77888887777999999999999999 78
Q ss_pred cccCcc-ccCccCCCEeeccCCCccccC-hhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 581 SSFPLG-ISVLVSLQHLDLSGTAIRELP-KELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 581 ~~lp~~-i~~L~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
+.+|.. +.++++|++|+|++|.|+.++ ..+..+++|++|+|++|.+ ..++.+.+..+++|++|++.+|..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCc
Confidence 888866 688999999999999999884 5699999999999999985 777777789999999999998763
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=6.3e-13 Score=132.65 Aligned_cols=129 Identities=22% Similarity=0.386 Sum_probs=107.5
Q ss_pred cccceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCE
Q 036761 519 WENARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQH 595 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~ 595 (897)
..++++|++++|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|+|++| .++.+|.. +.++++|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCE
Confidence 3578999999998888765 5788999999999 67788888887888999999999998 67776654 688999999
Q ss_pred eeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 596 LDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 596 L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
|++++|.++.+|.. +..+++|++|++++|.+ ..+|...+..+++|++|++++|.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCC
Confidence 99999999888765 68889999999999874 66777668889999999998875
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=4.1e-13 Score=153.43 Aligned_cols=182 Identities=19% Similarity=0.205 Sum_probs=120.1
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
+++.|++++|.+..+|... +++|++|+++ +|.++.+| ..+++|++|+|++| .++.+|. +++ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls-~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEIT-QNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECC-SSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECc-CCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 6778888888887776522 4778888888 66777777 34688888888888 6777887 655 888888888
Q ss_pred CCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCC
Q 036761 601 TAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHL 680 (897)
Q Consensus 601 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 680 (897)
|.|+.+|. .+++|++|++++|.+ ..+|. .+++|++|++++|.... .+. +. ++|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l-~~lp~----~l~~L~~L~Ls~N~L~~----------------lp~-l~--~~L 182 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQL-TMLPE----LPTSLEVLSVRNNQLTF----------------LPE-LP--ESL 182 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSC----------------CCC-CC--TTC
T ss_pred CcCCCCCC---cCccccEEeCCCCcc-CcCCC----cCCCcCEEECCCCCCCC----------------cch-hh--CCC
Confidence 88888887 678888888888874 55775 56788888888876543 122 33 678
Q ss_pred CEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEE
Q 036761 681 EVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKI 760 (897)
Q Consensus 681 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 760 (897)
+.|++++|.+..++. + ..+| ....+.|+.|++++|. ++.++.. ...+++|+.|
T Consensus 183 ~~L~Ls~N~L~~lp~-~-----~~~L------------------~~~~~~L~~L~Ls~N~-l~~lp~~--l~~l~~L~~L 235 (571)
T 3cvr_A 183 EALDVSTNLLESLPA-V-----PVRN------------------HHSEETEIFFRCRENR-ITHIPEN--ILSLDPTCTI 235 (571)
T ss_dssp CEEECCSSCCSSCCC-C-----C--------------------------CCEEEECCSSC-CCCCCGG--GGGSCTTEEE
T ss_pred CEEECcCCCCCchhh-H-----HHhh------------------hcccccceEEecCCCc-ceecCHH--HhcCCCCCEE
Confidence 888888877665432 0 0012 1112334666666653 3333322 2346777777
Q ss_pred EEeCCC
Q 036761 761 QIYGCH 766 (897)
Q Consensus 761 ~L~~c~ 766 (897)
+|++|+
T Consensus 236 ~L~~N~ 241 (571)
T 3cvr_A 236 ILEDNP 241 (571)
T ss_dssp ECCSSS
T ss_pred EeeCCc
Confidence 777773
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=6.3e-13 Score=131.26 Aligned_cols=144 Identities=17% Similarity=0.242 Sum_probs=121.8
Q ss_pred EEEEcCCCccCCCcccccccceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc
Q 036761 502 YLVYTGAGLTKPPNVREWENARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS 581 (897)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~ 581 (897)
.+...+..+...+.+..+.+++.|++++|.+..++.+..+++|++|+++ ++.+.......|..+++|++|++++| .++
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEECCSS-BCB
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEecCC-ccC
Confidence 4455566666667778889999999999999989889999999999999 66676643444899999999999999 555
Q ss_pred -ccCccccCccCCCEeeccCCC-ccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 582 -SFPLGISVLVSLQHLDLSGTA-IRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 582 -~lp~~i~~L~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
..|..++.+++|++|++++|. ++.+| .+..+++|++|++++|.+ ..++. +..+++|++|+++++.+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~~--l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYRG--IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCTT--GGGCSSCCEEEECBC--
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChHH--hccCCCCCEEEeeCccc
Confidence 477889999999999999997 88997 799999999999999985 66773 89999999999998764
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=7.7e-13 Score=144.22 Aligned_cols=154 Identities=23% Similarity=0.308 Sum_probs=102.0
Q ss_pred ccceEeeccccccccccc--cc-CCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCE
Q 036761 520 ENARRFSLMETQIRTLSA--VP-TCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQH 595 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~ 595 (897)
..++.|++++|.+..++. +. .+++|++|+|+ ++.+..+++..|.++++|++|+|++| .++.+|. .+.++.+|++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 356777777777776653 33 67777777777 66677777666777777777777777 5555543 4677777777
Q ss_pred eeccCCCcccc-ChhhhcCCcCcEecCCCCccccccChhhh---hcCCccceeeccccCCCCCCCCCCCCccccCccchh
Q 036761 596 LDLSGTAIREL-PKELNALENLQCLNLEETHFLITIPRQLI---SSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLV 671 (897)
Q Consensus 596 L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (897)
|+|++|.|+.+ |..+..+++|++|+|++|. +..+|...+ ..+++|++|++++|.+..+ ..
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---------------~~ 180 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL---------------PL 180 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC---------------CH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc---------------CH
Confidence 77777777766 4457777777777777776 366666544 4577777777777664432 33
Q ss_pred HHhcCCCC--CCEEEEEeCCcc
Q 036761 672 EALRGLEH--LEVLSLTLNNFQ 691 (897)
Q Consensus 672 ~~l~~l~~--L~~L~l~~~~~~ 691 (897)
..+..+++ |+.|++.+|.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 44555555 366777777654
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=7.2e-12 Score=138.10 Aligned_cols=287 Identities=14% Similarity=-0.019 Sum_probs=176.0
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCC-----CC-CCEEEEEEeCCcC-CHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ-----GD-FDFLIWVVVSKDL-QIEKI 223 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~-f~~~~wv~~~~~~-~~~~~ 223 (897)
..++||+++++++.+++.. +..+.+.|+|++|+||||||+.+++..... .. ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 6799999999999877653 446789999999999999999999875211 11 3567888887776 88888
Q ss_pred HHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc--cccc-cccCCCCCCCCcEEEEecCChhH--
Q 036761 224 QEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA--FTTV-GVPIPPRDKSASKVVFTTRSTEV-- 298 (897)
Q Consensus 224 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~--~~~~-~~~l~~~~~~~s~iivTtR~~~v-- 298 (897)
+..++.++..........+.......+...+..++.+|||||++.... +... ...+.....+ ..||+||+....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~-~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDAN-ISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSC-EEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcc-eEEEEEECCCchHh
Confidence 888888873211111233445667778888887777999999975321 1111 1111111133 889999987532
Q ss_pred ------hhhcCCCceEEcCCCChHHHHHHHHHHhCC--CccCCCCcHHHHHHHHHHHcC---Ccch-HHHHHHhhh--h-
Q 036761 299 ------CGWMGAHKNFEVGCLSANDARELFRQNVGE--ETLNGHPDIRELSETVTKECG---SLPL-ALIITGRAM--A- 363 (897)
Q Consensus 299 ------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---glPl-ai~~~~~~l--~- 363 (897)
...+ ...+.+++++.++..+++...+.. .....++ +..+.+++.++ |.|. |+..+-.+. +
T Consensus 179 ~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 179 YMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1221 237999999999999999987531 1112222 44677777887 8887 443333322 2
Q ss_pred --cCCChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHHHHHhcCcccc
Q 036761 364 --CKKTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLIDCWIGEGFLKV 441 (897)
Q Consensus 364 --~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~~w~aeg~i~~ 441 (897)
..-+.+.+..+++... ...+.-++..|++ +.+..+..++....+..+. +......-..| ..
T Consensus 254 ~~~~i~~~~v~~~~~~~~-------------~~~~~~~~~~l~~-~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYE-------------QERLIEAVKALPF-HYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-
T ss_pred CCCccCHHHHHHHHHHHh-------------cchHHHHHHcCCH-HHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-
Confidence 1235667766655432 1345566778887 5565555555411101111 11111111122 11
Q ss_pred CCcchhhhhHHHHHHHHHHhcccccc
Q 036761 442 TGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 442 ~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
.........+++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 12235567789999999999874
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=6.3e-13 Score=144.88 Aligned_cols=176 Identities=19% Similarity=0.185 Sum_probs=133.4
Q ss_pred ceEeecccccccccccccCCccceeeehhccccccccchhhhc-CCCcccEEEccCCCCCcccC-ccccCccCCCEeecc
Q 036761 522 ARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFK-SMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLS 599 (897)
Q Consensus 522 lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~ 599 (897)
.+.+++.++.+..+|.. -.+.++.|+|+ ++.++.++...|. ++++|++|+|++| .++.+| ..+.++++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls-~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLS-HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECC-SSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECC-CCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 35788888888888752 24568999999 7789999988787 9999999999999 777766 569999999999999
Q ss_pred CCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCC
Q 036761 600 GTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLE 678 (897)
Q Consensus 600 ~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 678 (897)
+|+|+.+|. .+..+++|++|+|++|.+ ..++...+..+++|++|++++|....+. ......+..++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------~~~~~~~~~l~ 163 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFP------------VELIKDGNKLP 163 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCSCC------------GGGTC----CT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcc-cEECHHHhCCcccCCEEECCCCcCCeeC------------HHHhcCcccCC
Confidence 999998876 488999999999999985 6665556999999999999998765421 01111226789
Q ss_pred CCCEEEEEeCCcccHHHHHhchhcccc--ceeEEEeccC
Q 036761 679 HLEVLSLTLNNFQDLQCVLKSKELRRC--TQALYLYSFK 715 (897)
Q Consensus 679 ~L~~L~l~~~~~~~~~~~~~~~~~~~~--L~~L~L~~~~ 715 (897)
+|+.|++++|.+..++... ...++. ++.|+|.+|+
T Consensus 164 ~L~~L~L~~N~l~~l~~~~--~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 164 KLMLLDLSSNKLKKLPLTD--LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCCEEECCSSCCCCCCHHH--HHHSCHHHHTTEECCSSC
T ss_pred cCCEEECCCCCCCccCHHH--hhhccHhhcceEEecCCC
Confidence 9999999999987654211 111112 3567777665
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=130.73 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=118.4
Q ss_pred EcCCCccCCCcccccccceEeeccccccccccc---ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCc
Q 036761 505 YTGAGLTKPPNVREWENARRFSLMETQIRTLSA---VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMS 581 (897)
Q Consensus 505 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~ 581 (897)
..+..+..+|.. -...++.|++++|.+..++. +..+++|++|+++ ++.++.+++..|.++++|++|+|++| .++
T Consensus 18 ~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~ 94 (220)
T 2v70_A 18 CSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN-RLE 94 (220)
T ss_dssp CCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred eCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECCCC-ccC
Confidence 344445554431 23467899999999998843 6789999999999 77899999878999999999999999 667
Q ss_pred ccCc-cccCccCCCEeeccCCCcccc-ChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 582 SFPL-GISVLVSLQHLDLSGTAIREL-PKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 582 ~lp~-~i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
.+|. .+.++++|++|+|++|.|+.+ |..+..+++|++|+|++|.+ ..+++..+..+++|++|++++|..
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC-CCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC-CEECHHHhcCCCCCCEEEecCcCC
Confidence 6654 589999999999999999988 56799999999999999985 566445599999999999998763
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=8.5e-12 Score=137.75 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=177.3
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCC----CCCCEEEEEEeCCcCCHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ----GDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
+.++||+++++++.+++.. +..+.+.|+|++|+||||+|+.+++..... +.-...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 6799999999999998843 456789999999999999999999876321 11245778888888889999999
Q ss_pred HHHHhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEeccccccc----cccc---cccCCCC--CCCCcEEEEecCC
Q 036761 227 IGKKVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRVA----FTTV---GVPIPPR--DKSASKVVFTTRS 295 (897)
Q Consensus 227 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~~----~~~~---~~~l~~~--~~~~s~iivTtR~ 295 (897)
++.+++..... ...+..+....+...+. +++.+|||||++.... .+.+ ....... ..+ ..+|+||+.
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~-~~~I~~t~~ 176 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVW-VSLVGITNS 176 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC------CEEEEECSC
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCce-EEEEEEECC
Confidence 99998754321 23345566666776663 4588999999975321 1212 1111111 223 678888876
Q ss_pred hhH--------hhhcCCCceEEcCCCChHHHHHHHHHHhCC--CccCCCCcHHHHHHHHHHHcC---CcchH-HHHHHhh
Q 036761 296 TEV--------CGWMGAHKNFEVGCLSANDARELFRQNVGE--ETLNGHPDIRELSETVTKECG---SLPLA-LIITGRA 361 (897)
Q Consensus 296 ~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---glPla-i~~~~~~ 361 (897)
... ...+. ...+.+++++.++..+++...+.. .....++ +..+.+++.++ |.|.. +..+..+
T Consensus 177 ~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 532 22111 146899999999999999987532 1112223 34667777777 99943 3333222
Q ss_pred hh-----c--CCChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhc-cCCCCcccChhhHHHHH
Q 036761 362 MA-----C--KKTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCC-LFPEDYRIYKENLIDCW 433 (897)
Q Consensus 362 l~-----~--~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~li~~w 433 (897)
.. + .-+.+.+..+++... ...+.-++..++. +.+..+.... ++.....+...++.+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 21 1 125566666554332 1234556778887 5555555444 34322234444333332
Q ss_pred Hh----cCccccCCcchhhhhHHHHHHHHHHhcccccc
Q 036761 434 IG----EGFLKVTGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 434 ~a----eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
.. .| .. .........+++.|...++++..
T Consensus 319 ~~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 319 KELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 11 12 11 12245667889999999999874
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.37 E-value=7.2e-13 Score=128.22 Aligned_cols=140 Identities=15% Similarity=0.215 Sum_probs=82.8
Q ss_pred ccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhh-hcCC
Q 036761 536 SAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKEL-NALE 614 (897)
Q Consensus 536 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i-~~L~ 614 (897)
+.+..+++|++|+++ ++.+..++. +....++|++|++++| .++.+ ..++.+++|++|++++|.|+.+|..+ ..++
T Consensus 13 ~~~~~~~~L~~L~l~-~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLR-GYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECT-TSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEee-CCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 344556666666666 445555543 2222336777777776 55555 46666777777777777777666543 6677
Q ss_pred cCcEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 615 NLQCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 615 ~L~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
+|++|++++|.+ ..+|. ..+..+++|++|++++|..... .......+..+++|+.|+++.|....
T Consensus 89 ~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHHH
Confidence 777777777664 55554 1266667777777766654321 00012246667777777777776654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.4e-12 Score=125.16 Aligned_cols=127 Identities=24% Similarity=0.366 Sum_probs=79.3
Q ss_pred ccceEeeccccccc--ccccc-cCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc-cCccccCccCCCE
Q 036761 520 ENARRFSLMETQIR--TLSAV-PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS-FPLGISVLVSLQH 595 (897)
Q Consensus 520 ~~lr~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~ 595 (897)
.++++|++++|.+. .+|.. ..+++|++|+++ ++.+..+ ..|..+++|++|+|++| .++. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 35667777776666 55543 566667777776 4445555 23666677777777776 4444 5555555667777
Q ss_pred eeccCCCccccC--hhhhcCCcCcEecCCCCccccccCh---hhhhcCCccceeeccccCC
Q 036761 596 LDLSGTAIRELP--KELNALENLQCLNLEETHFLITIPR---QLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 596 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~~~~~ 651 (897)
|++++|.++.+| ..+..+++|++|++++|.+ ..+|. ..+..+++|++|++.+|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCCh
Confidence 777777666655 4566667777777777664 44444 3366666666666666553
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.1e-12 Score=123.19 Aligned_cols=123 Identities=26% Similarity=0.355 Sum_probs=79.4
Q ss_pred ccceEeeccccccc--ccccc-cCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcc-cCccccCccCCCE
Q 036761 520 ENARRFSLMETQIR--TLSAV-PTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSS-FPLGISVLVSLQH 595 (897)
Q Consensus 520 ~~lr~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~-lp~~i~~L~~L~~ 595 (897)
.++++|++++|.+. .+|.. ..+++|++|+++ ++.+..+ ..+..+++|++|++++| .++. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 35677777777766 55543 566777777777 4556555 33666777777777777 4544 6655666777777
Q ss_pred eeccCCCccccC--hhhhcCCcCcEecCCCCccccccCh---hhhhcCCccceeecc
Q 036761 596 LDLSGTAIRELP--KELNALENLQCLNLEETHFLITIPR---QLISSFSSLIVLRMF 647 (897)
Q Consensus 596 L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~---~~~~~l~~L~~L~l~ 647 (897)
|++++|.++.+| ..++.+++|++|++++|.+ ..+|. ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 777777777654 5667777777777777764 44444 346667777776654
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=9.6e-13 Score=127.33 Aligned_cols=131 Identities=20% Similarity=0.253 Sum_probs=110.1
Q ss_pred cccccccceEeecccccccccccccCCc-cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccc-cCccC
Q 036761 515 NVREWENARRFSLMETQIRTLSAVPTCL-HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGI-SVLVS 592 (897)
Q Consensus 515 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i-~~L~~ 592 (897)
....+.+++.|++.+|.+..++.+..+. +|++|+++ ++.++.++ .|..+++|++|+|++| .++.+|..+ +.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls-~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECC-CCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCC
Confidence 3445568999999999999888776665 99999999 66787773 3889999999999999 788887665 88999
Q ss_pred CCEeeccCCCccccCh--hhhcCCcCcEecCCCCccccccChh---hhhcCCccceeeccccC
Q 036761 593 LQHLDLSGTAIRELPK--ELNALENLQCLNLEETHFLITIPRQ---LISSFSSLIVLRMFGVG 650 (897)
Q Consensus 593 L~~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~---~~~~l~~L~~L~l~~~~ 650 (897)
|++|++++|.|+.+|. .+..+++|++|++++|.+ ..+|.. ++..+++|++|+++.+.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999987 788999999999999985 567764 58899999999998865
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.6e-12 Score=124.74 Aligned_cols=137 Identities=23% Similarity=0.182 Sum_probs=106.9
Q ss_pred CCccceeeehhcccccc--ccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccc-cChhhhcCCcC
Q 036761 540 TCLHLLTLFLIFNEELE--MITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRE-LPKELNALENL 616 (897)
Q Consensus 540 ~~~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L 616 (897)
..++|++|+++ ++.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.++. +|..+.++++|
T Consensus 22 ~~~~L~~L~l~-~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLD-NCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECC-SCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECC-CCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 45789999999 56676 77765 788999999999999 67777 688899999999999999987 77778889999
Q ss_pred cEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccH
Q 036761 617 QCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDL 693 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (897)
++|++++|.+ ..+|. ..+..+++|++|++++|..... .......+..+++|+.|+++.|.....
T Consensus 98 ~~L~Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 98 THLNLSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNL------------NDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CEEECBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTS------------TTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred CEEeccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcch------------HHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999975 66652 3388899999999998865431 000124688889999999888876543
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1e-10 Score=129.09 Aligned_cols=290 Identities=13% Similarity=0.044 Sum_probs=176.1
Q ss_pred CCCccchHHHHHHHHHhcc----CCce--EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVG--IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
+.++||+++++++.+++.. +... .+.|+|++|+||||||+.+++...... -..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 6799999999999988864 2334 899999999999999999998873221 24577888888888889999999
Q ss_pred HHhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEeccccc--cccccccccCCCCC----CCCcEEEEecCChhHhh
Q 036761 229 KKVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQR--VAFTTVGVPIPPRD----KSASKVVFTTRSTEVCG 300 (897)
Q Consensus 229 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~~~~~~~~l~~~~----~~~s~iivTtR~~~v~~ 300 (897)
..++..... ...........+...+. +++.+||||+++.. .....+...+.... .+ ..||+||+......
T Consensus 96 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~-~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 96 RSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR-IALVIVGHNDAVLN 173 (389)
T ss_dssp HHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC-EEEEEEESSTHHHH
T ss_pred HHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC-EEEEEEECCchHHH
Confidence 988754321 22345556666666654 56889999999753 22333322222111 23 78888888764422
Q ss_pred hcC-------CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHc---------CCcchHHHHHHhhhh-
Q 036761 301 WMG-------AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKEC---------GSLPLALIITGRAMA- 363 (897)
Q Consensus 301 ~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~glPlai~~~~~~l~- 363 (897)
... ....+.+++++.++..+++...+.... ....--.+..+.+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 211 123699999999999999988764211 01112245678889998 788765444332211
Q ss_pred -----cC--CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCC---CCcccChhhHHHHH
Q 036761 364 -----CK--KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFP---EDYRIYKENLIDCW 433 (897)
Q Consensus 364 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~li~~w 433 (897)
+. -+.+....+....... .+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~~~-------------~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVLFG-------------ISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHSCC-------------CCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHhhh-------------hHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 11 2333333333322111 01122445666 5666666555443 12144555555544
Q ss_pred Hh----cCccccCCcchhhhhHHHHHHHHHHhcccccc
Q 036761 434 IG----EGFLKVTGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 434 ~a----eg~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
.. .|... -.......++++|...+++...
T Consensus 319 ~~~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 32 12111 1134566789999999999874
No 133
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=1.4e-11 Score=135.83 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=171.3
Q ss_pred CCCccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCC-CCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD-FDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+.++||+++++.+.+++.. +..+.+.|+|++|+||||||+.+++....... -..++|+.+....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999998863 45678999999999999999999987632111 235778887777778888888888
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc------ccccccccCCC-CCCCCcEEEEecCChhHhh
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV------AFTTVGVPIPP-RDKSASKVVFTTRSTEVCG 300 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~~~~~~~~l~~-~~~~~s~iivTtR~~~v~~ 300 (897)
+++..... ...+..+....+.+.+. +++.+||||+++... .+..+...+.. ...+ ..+|+||+......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~-~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK-ISFIGITNDVKFVD 177 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC---EEEEEEESCGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe-EEEEEEECCCChHh
Confidence 77653321 22334555666666665 448999999996532 12222111111 1223 67788888764322
Q ss_pred hcC------C-CceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcC---CcchHHHHHHh-hhh-----c
Q 036761 301 WMG------A-HKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECG---SLPLALIITGR-AMA-----C 364 (897)
Q Consensus 301 ~~~------~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---glPlai~~~~~-~l~-----~ 364 (897)
.+. . ...+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+..+.. ... +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 111 1 14799999999999999998653111 011122455677777777 99984433322 211 1
Q ss_pred --CCChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCC-C-cccChhhHHHHHH--h--c
Q 036761 365 --KKTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPE-D-YRIYKENLIDCWI--G--E 436 (897)
Q Consensus 365 --~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~li~~w~--a--e 436 (897)
.-+.+.+..+++... ...+.-.+..+|. ..+..+..++...+ + ..+...++.+... + .
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 124555555444321 1345556677876 55555544442111 1 1222333322211 1 1
Q ss_pred CccccCCcchhhhhHHHHHHHHHHhcccccc
Q 036761 437 GFLKVTGKYEVQDKGHTILGNIVHACLLEEE 467 (897)
Q Consensus 437 g~i~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 467 (897)
| +.. ........+++.|...++++..
T Consensus 323 g-~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 1 111 1124556789999999998763
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.33 E-value=6.7e-13 Score=157.65 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=99.9
Q ss_pred ccceEeeccccccccccc-ccCCccceeeehhc----cccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 520 ENARRFSLMETQIRTLSA-VPTCLHLLTLFLIF----NEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 520 ~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~----~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
..+++|++..+.+...+. ......|+.+.+.. ++.+. +++..|..++.|++|+|++| .+..+|..+.++.+|+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCSCCCGGGGGCCSCS
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCC
Confidence 357788888777766542 22223333333221 33333 55666899999999999999 7889999999999999
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHh
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEAL 674 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (897)
+|+|++|.|+.+|..+++|++|++|+|++|.+ ..+|.. +++|++|++|++++|.+.. ++..|
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~----------------lp~~~ 312 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAE-LGSCFQLKYFYFFDNMVTT----------------LPWEF 312 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSS-GGGGTTCSEEECCSSCCCC----------------CCSST
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChh-hcCCCCCCEEECCCCCCCc----------------cChhh
Confidence 99999999999999999999999999999985 588887 8999999999999987543 55568
Q ss_pred cCCCCCCEEEEEeCCcccHH
Q 036761 675 RGLEHLEVLSLTLNNFQDLQ 694 (897)
Q Consensus 675 ~~l~~L~~L~l~~~~~~~~~ 694 (897)
..+++|+.|+|++|.+....
T Consensus 313 ~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 313 GNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp TSCTTCCCEECTTSCCCSHH
T ss_pred hcCCCccEEeCCCCccCCCC
Confidence 89999999999999987643
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.7e-12 Score=119.43 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=95.7
Q ss_pred CCccceeeehhcccccc--ccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccc-cChhhhcCCcC
Q 036761 540 TCLHLLTLFLIFNEELE--MITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRE-LPKELNALENL 616 (897)
Q Consensus 540 ~~~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~~L~~L 616 (897)
..++|+.|+++ ++.+. .+|. .+..+++|++|++++| .++.+ ..++.+++|++|++++|.++. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~-~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLD-NSRSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECT-TCBCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEcc-CCcCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34778889988 55566 6665 4788889999999988 67766 678888899999999998887 77777788899
Q ss_pred cEecCCCCccccccCh-hhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEE
Q 036761 617 QCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLT 686 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 686 (897)
++|++++|.+ ..+|. ..+..+++|++|++++|..... .......+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~l~~~------------~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCEVTNL------------NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCGGGGS------------TTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCcccch------------HHHHHHHHHHCCCcccccCC
Confidence 9999998874 55431 2378888888888888764321 00012457778888877653
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=1e-11 Score=121.81 Aligned_cols=122 Identities=19% Similarity=0.292 Sum_probs=67.0
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~ 601 (897)
+.++++++.+..+|.. -.++|++|+++ ++.++.+|. .|.++++|++|+|++| .++.++ ..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~-~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLD-GNQFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECC-SSCCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECC-CCcCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 3455555665555532 12456666666 445555553 3556666666666666 444443 34556666666666666
Q ss_pred CccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeecccc
Q 036761 602 AIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGV 649 (897)
Q Consensus 602 ~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~ 649 (897)
.|+.+|. .+..+++|++|+|++|.+ ..+|.+.+..+++|++|++.++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCC
Confidence 6665543 355566666666666653 4455444555555555555544
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.2e-11 Score=117.88 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=83.7
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 601 (897)
+.+++.++.+..+|. ...++|++|+++ ++.+..++...|..+++|++|++++| .++.+|.. +..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 456666666666653 233677777777 55666777666777777777777777 56665543 567777777777777
Q ss_pred CccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 602 AIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 602 ~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
.++.+|.. +..+++|++|++++|.+ ..+|...+..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 77777654 56777777777777764 56666555667777777766654
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=1.5e-11 Score=120.72 Aligned_cols=124 Identities=23% Similarity=0.365 Sum_probs=87.8
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchh-hhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSD-FFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSG 600 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~ 600 (897)
+.++++++.+..+|.. -..+|++|+++ ++.+..+++. .|..+++|++|+|++| .++.+ |..+.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECC-CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 5677777777777652 12378888888 6667777653 4777888888888888 55554 66778888888888888
Q ss_pred CCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 601 TAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 601 ~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
|+|+.+|.. +..+++|++|++++|.+....|. .+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence 888876654 77788888888888875333343 47777777777777765
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.24 E-value=5.1e-11 Score=122.28 Aligned_cols=197 Identities=14% Similarity=0.101 Sum_probs=116.3
Q ss_pred CCCccchHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEP-VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++||+..++.+..++..+. .+.+.|+|++|+||||||+.+++.......+.. ........ ...+......
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~ 95 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIEQGRFV 95 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHHTTCCS
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHhccCCc
Confidence 568999999999999987643 358999999999999999999887642221100 00000000 0111100000
Q ss_pred CCch--hccccHHHHHHHHHHHh-----ccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCChhHh--hhc
Q 036761 234 FNDS--WMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRSTEVC--GWM 302 (897)
Q Consensus 234 ~~~~--~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~--~~~ 302 (897)
..-. ............+.+.+ .+++.+||+||++. ...+..+...+.....+ ..+|+||+..... ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 96 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTT-EEEEEEESCGGGSCHHHH
T ss_pred ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCCHHHH
Confidence 0000 00001111122222222 34679999999965 33444444333333334 7888888775421 112
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhh
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAM 362 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l 362 (897)
.....+.+++++.++..+++...+....... -.+..+.|++.|+|.|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2245799999999999999998874332111 23567899999999999987765443
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=3e-11 Score=118.38 Aligned_cols=127 Identities=21% Similarity=0.253 Sum_probs=106.5
Q ss_pred eeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCC
Q 036761 545 LTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEE 623 (897)
Q Consensus 545 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~ 623 (897)
++++++ ++.++.+|..+ .++|++|+|++| .++.+|..+.++.+|++|+|++|.|+.++. .|..+++|++|+|++
T Consensus 13 ~~l~~~-~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCS-NKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECT-TSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcC-CCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567887 67788888763 368999999999 888999899999999999999999998875 589999999999999
Q ss_pred CccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 624 THFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 624 ~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
|.+ ..++...+..+++|++|++++|.+..+ ....+..+++|+.|++++|.+..
T Consensus 88 N~l-~~i~~~~f~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRL-RCIPPRTFDGLKSLRLLSLHGNDISVV---------------PEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCC-CBCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECCSSCEEC
T ss_pred Ccc-CEeCHHHhCCCCCCCEEECCCCCCCee---------------ChhhhhcCccccEEEeCCCCeec
Confidence 985 677766689999999999999876542 33457789999999999998753
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=8.7e-12 Score=122.33 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=107.2
Q ss_pred eeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc--ccCccCCCEeeccCCCcccc-ChhhhcCCcCcEecC
Q 036761 545 LTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG--ISVLVSLQHLDLSGTAIREL-PKELNALENLQCLNL 621 (897)
Q Consensus 545 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~--i~~L~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~L 621 (897)
++++++ ++.++.+|..++ .+|++|++++| .++.+|.. ++.+++|++|+|++|.|+.+ |..+..+++|++|+|
T Consensus 11 ~~l~~s-~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECT-TSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcC-CCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 788888 778889997643 38999999999 78887754 89999999999999999987 678999999999999
Q ss_pred CCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
++|.+ ..++...+..+++|++|++++|..... .+..+..+++|+.|++++|.+..
T Consensus 86 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENKI-KEISNKMFLGLHQLKTLNLYDNQISCV---------------MPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCCC-CEECSSSSTTCTTCCEEECCSSCCCEE---------------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcC-CccCHHHhcCCCCCCEEECCCCcCCee---------------CHHHhhcCCCCCEEEeCCCCccC
Confidence 99985 666666689999999999999875432 45668889999999999998753
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=5.2e-12 Score=145.19 Aligned_cols=101 Identities=22% Similarity=0.326 Sum_probs=62.2
Q ss_pred ceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCC
Q 036761 544 LLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEE 623 (897)
Q Consensus 544 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~ 623 (897)
|++|+++ ++.++.+|. |+.+++|++|+|++| .++.+|..++++++|++|+|++|.|+.+| .++++++|++|+|++
T Consensus 443 L~~L~Ls-~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECT-TSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred ceEEEec-CCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 5666666 455555654 566666666666666 55566666666666666666666666666 566666666666666
Q ss_pred Ccccccc--ChhhhhcCCccceeeccccCC
Q 036761 624 THFLITI--PRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 624 ~~~l~~l--p~~~~~~l~~L~~L~l~~~~~ 651 (897)
|.+ ..+ |.. ++.+++|++|++++|..
T Consensus 518 N~l-~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 NRL-QQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SCC-CSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CCC-CCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 654 333 443 66666666666666543
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.18 E-value=1.2e-10 Score=117.49 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=114.9
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
.+++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhccc
Confidence 56899999999999999876655699999999999999999988652221112234444444333332222221111100
Q ss_pred CchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChhHh--hhcCCCceEEc
Q 036761 235 NDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTEVC--GWMGAHKNFEV 310 (897)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~v~--~~~~~~~~~~l 310 (897)
. ...+++.+||+||++.. .....+...+.....+ .++|+||+..... ........+.+
T Consensus 97 ~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 97 P-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp C-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred C-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcCHHHHHhCceeec
Confidence 0 01256889999999753 2233333333222334 7889988875421 11122347899
Q ss_pred CCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 311 GCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 311 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
.+++.++..+++.+.+....... -.+..+.+++.++|.|..+..+.
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998774322111 13567888999999998655443
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=4.1e-11 Score=137.72 Aligned_cols=121 Identities=20% Similarity=0.248 Sum_probs=106.7
Q ss_pred cceEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccC
Q 036761 521 NARRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSG 600 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~ 600 (897)
.++.|++++|.+..+|.+..+++|++|+++ +|.++.+|.. |+++++|++|+|++| .++.+| .++++++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecC-cccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 478999999999999999999999999999 7788899875 899999999999999 888899 899999999999999
Q ss_pred CCcccc--ChhhhcCCcCcEecCCCCccccccChh---hhhcCCccceeec
Q 036761 601 TAIREL--PKELNALENLQCLNLEETHFLITIPRQ---LISSFSSLIVLRM 646 (897)
Q Consensus 601 ~~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~~---~~~~l~~L~~L~l 646 (897)
|.|+.+ |..++.+++|++|+|++|.+ ..+|+. ++..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 999988 89999999999999999985 444432 2455788888753
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.15 E-value=1.8e-11 Score=145.37 Aligned_cols=115 Identities=23% Similarity=0.301 Sum_probs=98.9
Q ss_pred ccccccceEeecccccccccc-cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCC
Q 036761 516 VREWENARRFSLMETQIRTLS-AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQ 594 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~ 594 (897)
+..+..++.|++++|.+..++ .+..+++|++|+|+ +|.++.+|.. |.+|++|++|+|++| .++.+|..|++|.+|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence 344568999999999998886 45689999999999 7778888866 789999999999999 7889999999999999
Q ss_pred EeeccCCCccccChhhhcCCcCcEecCCCCccccccChh
Q 036761 595 HLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQ 633 (897)
Q Consensus 595 ~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 633 (897)
+|+|++|.|+.+|..|++|++|++|+|++|.+.+.+|..
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 999999999999999999999999999999875555543
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.4e-10 Score=112.20 Aligned_cols=128 Identities=20% Similarity=0.237 Sum_probs=106.1
Q ss_pred ceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCCccccChh-hhcCCcCcEecC
Q 036761 544 LLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNL 621 (897)
Q Consensus 544 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 621 (897)
.+.++++ ++.+..+|..+ .++|++|++++| .++.+|. .++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 9 ~~~l~~~-~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCN-SKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECC-SSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEec-CCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 5677887 67788888653 478999999999 6777765 468999999999999999999875 689999999999
Q ss_pred CCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
++|.+ ..+|...+..+++|++|+++++....+ ....+..+++|+.|++++|.+..
T Consensus 84 ~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~---------------~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKL-QSLPNGVFDKLTQLKELALDTNQLKSV---------------PDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCC---------------CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCc-cccCHHHhhCCcccCEEECcCCcceEe---------------CHHHhcCCcccCEEEecCCCeec
Confidence 99985 677777689999999999999876532 33346788999999999998765
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=1.1e-10 Score=125.26 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=160.4
Q ss_pred cccceEeecccccc-cccccccC-Cccceeeehhcccccc--ccchhhhcCCCcccEEEccCCCCCcccC-ccccC----
Q 036761 519 WENARRFSLMETQI-RTLSAVPT-CLHLLTLFLIFNEELE--MITSDFFKSMPRLKVLNLSGARRMSSFP-LGISV---- 589 (897)
Q Consensus 519 ~~~lr~L~l~~~~~-~~l~~~~~-~~~L~~L~l~~~~~l~--~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~---- 589 (897)
+.+++.|.+.++-- ..+..+.. +++|++|+|+ ++.+. ..+.. .++.++.+.+..+ .+| ..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs-~n~i~~~~~~~~---~~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDIS-NAEIKMYSGKAG---TYPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEE-EEEECCEEESSS---SSGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecC-cceeEEecCccc---ccccccccccccc----ccCHHHhcccccc
Confidence 44566666664311 11222222 6677777777 55555 22221 2223444554444 222 34556
Q ss_pred ----ccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccc
Q 036761 590 ----LVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLF 664 (897)
Q Consensus 590 ----L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 664 (897)
+.+|+.|+|.+ .++.++.. |..+++|+.|++.+|.. ..++...|..+.++..+.........
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i-~~i~~~aF~~~~~l~~l~~~~~~~~~----------- 162 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTA-PNLLPEALADSVTAIFIPLGSSDAYR----------- 162 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSC-CEECTTSSCTTTCEEEECTTCTHHHH-----------
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCc-cccchhhhcCCCceEEecCcchhhhh-----------
Confidence 88888888888 78877664 77888888888888864 56777777777777766554311000
Q ss_pred cCccchhHHhcCCCCCC-EEEEEeCCcccHHHHHh-chhccccceeEEEeccCCCccccccccc-ccCCCCceeeeecCC
Q 036761 665 SGGDLLVEALRGLEHLE-VLSLTLNNFQDLQCVLK-SKELRRCTQALYLYSFKRSEPLDVSALA-GLKHLNRLWIHECEE 741 (897)
Q Consensus 665 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 741 (897)
.........+.++.+|+ .+.+. ....++.... .......+..+.+.+.-. ......+. .+++|+.|++++|.
T Consensus 163 ~~~~i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~l~~~~~~L~~l~L~~n~- 237 (329)
T 3sb4_A 163 FKNRWEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLD--NADFKLIRDYMPNLVSLDISKTN- 237 (329)
T ss_dssp TSTTTTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCC--HHHHHHHHHHCTTCCEEECTTBC-
T ss_pred ccccccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeec--HHHHHHHHHhcCCCeEEECCCCC-
Confidence 00000111233445555 33332 2223332221 111233455555554321 11111222 37888999988763
Q ss_pred ccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCcc-EEEEecCchhhhhhcccccCCccccccCCCcccccce
Q 036761 742 LEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLK-SIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYS 818 (897)
Q Consensus 742 l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~-~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~ 818 (897)
++.+ +...+..+++|++|+|.++ ++.++ .+..+++|+ .|.+.+ .++.+.. ..+.++++|+.
T Consensus 238 i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~~L~~ 301 (329)
T 3sb4_A 238 ATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCDNLRY 301 (329)
T ss_dssp CCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCTTEEE
T ss_pred ccee-cHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCccCCE
Confidence 5555 3444778889999998885 66555 466788898 898877 4555533 26778899999
Q ss_pred eecccccccccccC-CCCCCCCcceee
Q 036761 819 LRLGGLTVLKSIYK-RPLPFPCLRDLT 844 (897)
Q Consensus 819 L~l~~~~~l~~~~~-~~~~l~~L~~L~ 844 (897)
|++.+ +.++.++. .+..+++|+.|+
T Consensus 302 l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCC-CccCccchhhhcCCcchhhhc
Confidence 99876 56777765 445577777765
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=3.7e-12 Score=125.86 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=69.8
Q ss_pred hcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcCcEecCCCCccccccChhhhhcCCccc
Q 036761 563 FKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLI 642 (897)
Q Consensus 563 ~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~ 642 (897)
|..+++|++|+|++| .++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+ ..+|. +..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l-~~l~~--~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI-ASLSG--IEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEEC-CCHHH--HHHHHHSS
T ss_pred HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcC-CcCCc--cccCCCCC
Confidence 566666777777666 555566 66666677777777766666666666666677777766653 44552 66666677
Q ss_pred eeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccH
Q 036761 643 VLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDL 693 (897)
Q Consensus 643 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 693 (897)
+|++++|....+ .....+..+++|+.|++++|.+...
T Consensus 119 ~L~l~~N~i~~~--------------~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITNW--------------GEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCCH--------------HHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCch--------------hHHHHHhcCCCCCEEEecCCccccc
Confidence 776666553320 0123566666777777776666443
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=9.7e-12 Score=122.81 Aligned_cols=108 Identities=20% Similarity=0.219 Sum_probs=90.0
Q ss_pred cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccccChhhhcCCcC
Q 036761 537 AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRELPKELNALENL 616 (897)
Q Consensus 537 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L 616 (897)
.+..+++|++|+++ ++.+..+| .+..+++|++|++++| .++.+|..+..+++|++|++++|.++.+| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls-~n~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALS-TNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECS-EEEESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred HHhcCCCCCEEECC-CCCCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 45678899999998 66788887 4788999999999999 77888888888889999999999999887 68889999
Q ss_pred cEecCCCCccccccCh-hhhhcCCccceeeccccC
Q 036761 617 QCLNLEETHFLITIPR-QLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 617 ~~L~L~~~~~l~~lp~-~~~~~l~~L~~L~l~~~~ 650 (897)
++|++++|.+ ..+|. ..+..+++|++|++++|.
T Consensus 118 ~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 118 RVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence 9999999974 55554 347889999999998875
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.03 E-value=5e-10 Score=107.54 Aligned_cols=100 Identities=18% Similarity=0.364 Sum_probs=51.4
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 601 (897)
+.++++++.+..+|... .++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 34555555555554311 2455555555 44455554444555555555555555 44444443 345555555555555
Q ss_pred CccccChh-hhcCCcCcEecCCCCc
Q 036761 602 AIRELPKE-LNALENLQCLNLEETH 625 (897)
Q Consensus 602 ~i~~lp~~-i~~L~~L~~L~L~~~~ 625 (897)
.|+.+|.. +..+++|++|+|++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 55555543 5555555555555554
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=7.2e-09 Score=113.63 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=44.0
Q ss_pred cceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCCccccChhhhcCCcCcEecC
Q 036761 543 HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTAIRELPKELNALENLQCLNL 621 (897)
Q Consensus 543 ~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~L 621 (897)
+|+.+.+. . .+..++...|.++ +|+.+.+.++ ++.++ ..|.+|.+|+.+++++|+++.+|...-...+|+.+.+
T Consensus 136 ~L~~i~l~-~-~i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLN-E-GLKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECC-T-TCCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeC-C-CccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 34444443 1 2444444444442 3555555432 23322 3344455555555555555555443333445555555
Q ss_pred CCCccccccChhhhhcCCccceeecc
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMF 647 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~ 647 (897)
..+ +..++...|.++++|+.+.+.
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECC
T ss_pred CCc--hheehhhHhhCCCCCCEEecC
Confidence 433 344444444444445444443
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=7e-10 Score=106.18 Aligned_cols=101 Identities=16% Similarity=0.364 Sum_probs=52.9
Q ss_pred eEeecccccccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCcc-ccCccCCCEeeccCC
Q 036761 523 RRFSLMETQIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLG-ISVLVSLQHLDLSGT 601 (897)
Q Consensus 523 r~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~-i~~L~~L~~L~L~~~ 601 (897)
+.++++++.+..+|... .++|++|+++ ++.+..+++..|.++++|++|+|++| .++.+|.. +.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 34555555555554321 2455555555 44555554444555555555555555 44444433 345555555555555
Q ss_pred CccccChh-hhcCCcCcEecCCCCcc
Q 036761 602 AIRELPKE-LNALENLQCLNLEETHF 626 (897)
Q Consensus 602 ~i~~lp~~-i~~L~~L~~L~L~~~~~ 626 (897)
+|+.+|.. +..+++|++|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 55555543 55555555555555543
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=6.9e-10 Score=106.60 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=73.6
Q ss_pred eeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCC
Q 036761 545 LTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLE 622 (897)
Q Consensus 545 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~ 622 (897)
+.++++ ++.++.+|..+ .++|++|+|++| .++.+ |..++++++|++|+|++|+|+.+|.. +.++++|++|+|+
T Consensus 15 ~~l~~~-~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECC-SSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeC-CCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 567777 66677777653 277888888888 56555 55677888888888888888888765 4778888888888
Q ss_pred CCccccccChhhhhcCCccceeeccccC
Q 036761 623 ETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 623 ~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+|.+ ..+|.+.+..+++|++|++++|.
T Consensus 90 ~N~l-~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DNHL-KSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence 8864 66776667777777777777765
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=9.4e-09 Score=110.04 Aligned_cols=271 Identities=15% Similarity=0.083 Sum_probs=147.4
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
++++|++..++.+..++.. .....+.|+|++|+|||++|+.+++.. .. ..+++..+......++...+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~~l~~~l-- 84 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPGDLAAIL-- 84 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHHHHHHHH--
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChHHHHHHH--
Confidence 6789999999998887752 344678899999999999999999876 22 23344443332222221111
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--ccccccccCCC------------------CCCCCcEE
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--AFTTVGVPIPP------------------RDKSASKV 289 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~------------------~~~~~s~i 289 (897)
... ..++.+|+||++.... ....+...+.. ...+ .++
T Consensus 85 ---------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~ 141 (324)
T 1hqc_A 85 ---------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR-FTL 141 (324)
T ss_dssp ---------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC-CEE
T ss_pred ---------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC-EEE
Confidence 110 1245678888886421 11111100000 0012 567
Q ss_pred EEecCChhH-hhh-c-CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhhhhc--
Q 036761 290 VFTTRSTEV-CGW-M-GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRAMAC-- 364 (897)
Q Consensus 290 ivTtR~~~v-~~~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~l~~-- 364 (897)
|.||..... ... . .....+.+.+++.+|..+++...+.......+ .+....+++.++|.|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 777665422 110 1 12357899999999999999888754331222 456788999999999887766544321
Q ss_pred ----C--CChHHHHHHHHHHcccCCCCCCChHHHHHHHHHhhCCCCCccchhhhhhhccCCCCcccChhhHHH----HHH
Q 036761 365 ----K--KTPEEWRDAIKVLQTSASEFPGLENDVLRVLKFSYDSLPDDTTRSCLLYCCLFPEDYRIYKENLID----CWI 434 (897)
Q Consensus 365 ----~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~li~----~w~ 434 (897)
. -+.+....+...+..........+..+...+.-.|..-+. ....+-..++ +++..+.+ +-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lg-------i~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALS-------EDPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTT-------SCHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhC-------CCHHHHHHHHhHHHH
Confidence 1 2445555555444322111111122333333333332222 2333333333 33333322 345
Q ss_pred hcCccccCC-cchhhhhHHHHHH-HHHHhccccc
Q 036761 435 GEGFLKVTG-KYEVQDKGHTILG-NIVHACLLEE 466 (897)
Q Consensus 435 aeg~i~~~~-~~~~~~~~~~~l~-~L~~~~ll~~ 466 (897)
..|++.... +....+.|..|++ ++.+|+|||+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 678886543 3477889999998 8999999885
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1e-09 Score=117.56 Aligned_cols=185 Identities=17% Similarity=0.115 Sum_probs=113.6
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++...........+++..+.......+. .++..+...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~ 99 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVR-NQIKHFAQK 99 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHH-THHHHHHHB
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHH-HHHHHHHhc
Confidence 5689999999999999987766569999999999999999998875211111123444433322222211 111111000
Q ss_pred CchhccccHHHHHHHHHHHh-ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChhH--hhhcCCCceEE
Q 036761 235 NDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTEV--CGWMGAHKNFE 309 (897)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~v--~~~~~~~~~~~ 309 (897)
...+ .+++.++|+||++.. ..+..+...+.....+ +.+|+||+...- .........+.
T Consensus 100 ----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 100 ----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNS-TRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp ----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTT-EEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCC-ceEEEEeCChhhchhHHHhhceEEe
Confidence 0011 346889999999753 3344443333222334 788888876432 11122334799
Q ss_pred cCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH-HHHHHh
Q 036761 310 VGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA-LIITGR 360 (897)
Q Consensus 310 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla-i~~~~~ 360 (897)
+.+++.++..+++...+....... -.+....|++.++|.|.. +..+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999998764322111 135678899999999954 444433
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.1e-09 Score=104.82 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=63.5
Q ss_pred ceeeehhccccccccchhhhcCCCcccEEEccCCCCCccc-CccccCccCCCEeeccCCCccccChh-hhcCCcCcEecC
Q 036761 544 LLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSF-PLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNL 621 (897)
Q Consensus 544 L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L 621 (897)
.++++++ ++.++.+|..+ .++|++|+|++| .++.+ |..+.++++|++|+|++|+|+.+|.. +..+++|++|+|
T Consensus 11 ~~~l~~s-~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCS-GKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECT-TSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeC-CCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4566666 55666666542 266677777777 55554 44566677777777777777766654 466677777777
Q ss_pred CCCccccccChhhhhcCCccceeeccccC
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
++|.+ ..+|.+.+..+++|++|++++|.
T Consensus 86 ~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQL-KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcc-CEeCHHHhcCCCCCCEEEeCCCC
Confidence 77653 55555556666666666666654
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.1e-09 Score=117.70 Aligned_cols=263 Identities=10% Similarity=0.046 Sum_probs=173.7
Q ss_pred cccceEeeccccccccccc-ccCCccceeeehhccccccccchhhhcC--------CCcccEEEccCCCCCcccC-cccc
Q 036761 519 WENARRFSLMETQIRTLSA-VPTCLHLLTLFLIFNEELEMITSDFFKS--------MPRLKVLNLSGARRMSSFP-LGIS 588 (897)
Q Consensus 519 ~~~lr~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~--------l~~L~~L~Ls~~~~~~~lp-~~i~ 588 (897)
+.+++.|++++|.+..+.. ...++.++.+.+. .+ .+|...|.+ +++|+.|+|.+ .++.++ ..|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~-~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYM-AN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEEC-TT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccc-cc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 4579999999999883221 1223334445444 22 678888999 99999999998 356655 4588
Q ss_pred CccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCcc---ccccChhhhhcCCccc-eeeccccCCCCCCCCCCCCcc
Q 036761 589 VLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHF---LITIPRQLISSFSSLI-VLRMFGVGDWSPNGKKNDSDL 663 (897)
Q Consensus 589 ~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~---l~~lp~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~ 663 (897)
+|.+|+.|++++|.+..++.. |..+.++..+.+..... ...+....+..+.+|+ .+.+......
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l----------- 190 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL----------- 190 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH-----------
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH-----------
Confidence 999999999999999888764 77777788777765321 1233333356667776 4444332210
Q ss_pred ccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCcc
Q 036761 664 FSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELE 743 (897)
Q Consensus 664 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 743 (897)
.......--...++..+.+.++-.... .......++.|+.++|.++. ...++...+.++++|++|++.++ ++
T Consensus 191 ---~~~~~~~~~~~~~~~~l~~~~~l~~~~--~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~ 262 (329)
T 3sb4_A 191 ---EDEIMKAGLQPRDINFLTIEGKLDNAD--FKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LK 262 (329)
T ss_dssp ---HHHHHHTTCCGGGCSEEEEEECCCHHH--HHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CC
T ss_pred ---HHHHhhcccCccccceEEEeeeecHHH--HHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cc
Confidence 000111112356777787776532211 11111235689999998765 55666667889999999999875 66
Q ss_pred EEEecccCcCCCCcc-EEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceee
Q 036761 744 ELEMARQPFDFRSLK-KIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLR 820 (897)
Q Consensus 744 ~l~~~~~~~~l~~L~-~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~ 820 (897)
.++. ..+..+++|+ .|.+.+ .++.++ .+..+++|+.|+++++ .++.+.. ..+.++++|+.++
T Consensus 263 ~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~-----------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 263 TIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGD-----------ELFGNGVPSKLIY 327 (329)
T ss_dssp EECT-TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECT-----------TTTCTTCCCCEEE
T ss_pred eehH-HHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccch-----------hhhcCCcchhhhc
Confidence 6543 4478899999 999988 566654 5778999999999773 5555543 2577889999886
Q ss_pred c
Q 036761 821 L 821 (897)
Q Consensus 821 l 821 (897)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=9.1e-09 Score=112.82 Aligned_cols=215 Identities=16% Similarity=0.211 Sum_probs=145.9
Q ss_pred cceEeeccccccccccc--ccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCccccCccCCCEeec
Q 036761 521 NARRFSLMETQIRTLSA--VPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDL 598 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L 598 (897)
+++.+.+..+ +..++. |.++ +|+.+.+. + .+..++...|.+|++|+.++|++| .++.+|.....+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECC-T-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeC-C-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 5777777654 555543 4554 69999997 3 688899888999999999999998 78888877666799999999
Q ss_pred cCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCC
Q 036761 599 SGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGL 677 (897)
Q Consensus 599 ~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 677 (897)
..+ ++.++. .|.++++|+.+++..+ +..++...|.+ .+|+.+.+... ... .....|.++
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~---------------I~~~aF~~c 270 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTN---------------IASRAFYYC 270 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCE---------------ECTTTTTTC
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccE---------------EChhHhhCC
Confidence 854 888865 4889999999999876 57888887877 78999988542 111 123457788
Q ss_pred CCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCc
Q 036761 678 EHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSL 757 (897)
Q Consensus 678 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 757 (897)
++|+.+.+..+..... ....+....+.++++|+.+.+.+ .++.+.. ..+..+++|
T Consensus 271 ~~L~~l~l~~~~~~~~----------------------~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-~aF~~c~~L 325 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDD----------------------PEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-GLLGGNRKV 325 (401)
T ss_dssp TTCCEEEEESSCCCCC----------------------TTCEECTTTTTTCTTCCEECCCT--TCCEECT-TTTTTCCSC
T ss_pred CCCCEEEeCCccccCC----------------------cccEECHHHhhCCccCCeEEeCC--ceEEEhh-hhhcCCCCc
Confidence 8999998877654310 01112223566667777777663 3454432 225556666
Q ss_pred cEEEEeCCCCCCCCc--ccccCCCccEEEEecC
Q 036761 758 KKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSC 788 (897)
Q Consensus 758 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c 788 (897)
+.|.|..+ ++.++ .+..+ +|+.|.+.++
T Consensus 326 ~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 326 TQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred cEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 66666443 33332 24445 5666666553
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=3.9e-09 Score=113.22 Aligned_cols=183 Identities=15% Similarity=0.091 Sum_probs=112.6
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..+.......+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR---------- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH----------
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH----------
Confidence 5789999999999999987776679999999999999999999875211100123333333211111100
Q ss_pred CchhccccHHHHHHHHHH---HhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChhH-h-hhcCCCce
Q 036761 235 NDSWMKKNLAERAVDIYN---VLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTEV-C-GWMGAHKN 307 (897)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~---~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~v-~-~~~~~~~~ 307 (897)
+....... ...+++.++|+||++.. ..+..+...+.....+ +++|+||....- . ........
T Consensus 95 ----------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 95 ----------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSN-VRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp ----------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHTEEE
T ss_pred ----------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCCccccCHHHHhhCcE
Confidence 00111111 11256789999999753 3333343333222334 788888876532 0 11112246
Q ss_pred EEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHHhh
Q 036761 308 FEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITGRA 361 (897)
Q Consensus 308 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~~~ 361 (897)
+.+.+++.++...++...+....... -.+....|++.++|.|..+..+...
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999988764332111 1356788999999999866554433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.73 E-value=1.5e-08 Score=109.69 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=67.4
Q ss_pred eecccc-cccccccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEeeccCCC
Q 036761 525 FSLMET-QIRTLSAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHLDLSGTA 602 (897)
Q Consensus 525 L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L~L~~~~ 602 (897)
++.+++ .+..+|.+..+++|++|+|+++|.+..+++..|.++++|++|+|++| .++.+| ..|.+|++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 56666666666777777777336677777666777777777777777 455443 456777777777777777
Q ss_pred ccccChhhhcCCcCcEecCCCCcc
Q 036761 603 IRELPKELNALENLQCLNLEETHF 626 (897)
Q Consensus 603 i~~lp~~i~~L~~L~~L~L~~~~~ 626 (897)
|+.+|..+....+|+.|+|.+|.+
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cceeCHHHcccCCceEEEeeCCCc
Confidence 777766544333477777777764
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.70 E-value=5.1e-08 Score=104.02 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=111.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLF 234 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 234 (897)
.+++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~------------ 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV------------ 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH------------
Confidence 56899999999999998876665699999999999999999988752111101123334333211100
Q ss_pred CchhccccHHHHHHHHHHH--h-ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChhH--hhhcCCCce
Q 036761 235 NDSWMKKNLAERAVDIYNV--L-KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTEV--CGWMGAHKN 307 (897)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~v--~~~~~~~~~ 307 (897)
.......+... + .+++-++|+|+++.. .....+...+...... .++|+||....- .........
T Consensus 85 --------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~-~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 85 --------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKS-CRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp --------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSS-EEEEEEESCGGGSCHHHHTTCEE
T ss_pred --------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCC-CeEEEEeCChhhcchHHHhhCeE
Confidence 01111111111 1 256789999999753 3334444444433344 788888876542 111122347
Q ss_pred EEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 308 FEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 308 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+.+.+++.++...++...+......- -.+....+++.++|.+..+...
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999988775433111 2356788889999998765443
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.4e-07 Score=98.33 Aligned_cols=168 Identities=7% Similarity=0.027 Sum_probs=105.6
Q ss_pred CccchHHHHHHHHHhcc----CCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CC--CEEEEEEeCCcCCHHHHHHHH
Q 036761 157 TVGMQSQLDKVWSCLVE----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---DF--DFLIWVVVSKDLQIEKIQEII 227 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~~~~~i 227 (897)
+.|||+++++|...|.. +..+.+.|+|++|+|||++|+.+++...... .. -..+++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 67999999999877754 5778899999999999999999998874211 11 246677877888889999999
Q ss_pred HHHhCCCCchhccccHHHHHHHHHHHh---ccCceEEEEeccccccccccccccC--CCCCCCCcEEEEecCChhH----
Q 036761 228 GKKVGLFNDSWMKKNLAERAVDIYNVL---KEKKFVLLLDDVWQRVAFTTVGVPI--PPRDKSASKVVFTTRSTEV---- 298 (897)
Q Consensus 228 ~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~~~~~~~~l--~~~~~~~s~iivTtR~~~v---- 298 (897)
.+++...... .....+ ....+...+ .+++++++||+++....-+-+...+ +....+..-||.++...+.
T Consensus 102 ~~~L~g~~~~-~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLC-GDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC---CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCC-chHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9999653211 112222 233333333 4567999999997543211111111 1111111344444544321
Q ss_pred -----hhhcCCCceEEcCCCChHHHHHHHHHHhC
Q 036761 299 -----CGWMGAHKNFEVGCLSANDARELFRQNVG 327 (897)
Q Consensus 299 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 327 (897)
.+++. ...+.+++++.+|-.+++..++.
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 12221 24689999999999999998863
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.7e-08 Score=106.51 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=85.0
Q ss_pred eeeehhccccccccchhhhcCCCcccEEEccC-CCCCcccC-ccccCccCCCEeeccCCCccccCh-hhhcCCcCcEecC
Q 036761 545 LTLFLIFNEELEMITSDFFKSMPRLKVLNLSG-ARRMSSFP-LGISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNL 621 (897)
Q Consensus 545 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~-~~~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L 621 (897)
..+++++++.+..+|. +..+++|++|+|++ | .++.+| ..|++|.+|++|+|++|+|+.+|. .|.+|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3457773337888997 88999999999996 7 777776 569999999999999999998865 5799999999999
Q ss_pred CCCccccccChhhhhcCCccceeeccccCCC
Q 036761 622 EETHFLITIPRQLISSFSSLIVLRMFGVGDW 652 (897)
Q Consensus 622 ~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~ 652 (897)
++|.+ ..+|.+.+..++ |+.|++.+|...
T Consensus 88 ~~N~l-~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNAL-ESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCC-SCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCcc-ceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99984 788877666666 999999887643
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.68 E-value=1.2e-07 Score=103.52 Aligned_cols=194 Identities=12% Similarity=0.085 Sum_probs=109.7
Q ss_pred CCCccchHHHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEP-VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|++..++.+.+.+..+. ...+.|+|++|+||||+|+.+++.......+. ............+...-..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 88 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQGRFV 88 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHTSCCS
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhccCCC
Confidence 568999999999999887654 35789999999999999999988763221110 0000000001111110000
Q ss_pred C-----Cc-hhccccHHHHHHHHHHH-hccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChhH--hhhc
Q 036761 234 F-----ND-SWMKKNLAERAVDIYNV-LKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTEV--CGWM 302 (897)
Q Consensus 234 ~-----~~-~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~v--~~~~ 302 (897)
. .. ........++...+... ..+++.++|+||++.. ..+..+...+...... ..+|++|....- ....
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~-~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 89 DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH-VKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSS-EEEEEEESCGGGSCHHHH
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCc-eEEEEEeCChHhCcHHHH
Confidence 0 00 00011112221111110 1346789999999642 3334443333222333 677777765432 1112
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
.....+++.+++.++..+++...+....... -.+....|++.++|.|..+..+.
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 2346789999999999999987763322111 13557889999999998776554
No 165
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.64 E-value=8e-09 Score=112.10 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=93.1
Q ss_pred cceEeecccccccccc-----c-c-cCCccceeeehhccccccccc-hhhhcCCCcccEEEccCCCCCccc-----Cccc
Q 036761 521 NARRFSLMETQIRTLS-----A-V-PTCLHLLTLFLIFNEELEMIT-SDFFKSMPRLKVLNLSGARRMSSF-----PLGI 587 (897)
Q Consensus 521 ~lr~L~l~~~~~~~l~-----~-~-~~~~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~Ls~~~~~~~l-----p~~i 587 (897)
+++.|++++|.+.... . + ..+++|++|+|+ ++.++... ..++..+++|++|+|++| .++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 5677777777765421 1 1 234678888888 44443322 222344567888888888 55432 1112
Q ss_pred -cCccCCCEeeccCCCccc-----cChhhhcCCcCcEecCCCCccccc----cChhhhhcCCccceeeccccCCCCCCCC
Q 036761 588 -SVLVSLQHLDLSGTAIRE-----LPKELNALENLQCLNLEETHFLIT----IPRQLISSFSSLIVLRMFGVGDWSPNGK 657 (897)
Q Consensus 588 -~~L~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~----lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 657 (897)
....+|++|+|++|.|+. ++..+..+++|++|+|++|.+... ++. .+...++|++|++++|.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-~L~~~~~L~~L~Ls~N~i~~---- 225 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-QLDRNRQLQELNVAYNGAGD---- 225 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-HGGGCSCCCEEECCSSCCCH----
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-HHhcCCCcCeEECCCCCCCH----
Confidence 235678888888887763 455566777888888888864221 122 25566777788777765431
Q ss_pred CCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 658 KNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 658 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
.+.......+...++|+.|++++|.+..
T Consensus 226 -------~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 -------TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -------HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -------HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 0111233445566777777777777654
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=2.8e-07 Score=101.40 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=26.4
Q ss_pred hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccc
Q 036761 609 ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFG 648 (897)
Q Consensus 609 ~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~ 648 (897)
.|.++.+|+.+.+..+ ...++.+.+.++.+|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 3667777888877655 3556666677777787777654
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=9e-08 Score=93.61 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=41.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999987667788999999999999999998875
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.53 E-value=1.9e-08 Score=109.11 Aligned_cols=137 Identities=17% Similarity=0.206 Sum_probs=65.5
Q ss_pred ccceeeehhccccccccchhhhc-----CCCcccEEEccCCCCCcc--cCccccCccCCCEeeccCCCccccC-----hh
Q 036761 542 LHLLTLFLIFNEELEMITSDFFK-----SMPRLKVLNLSGARRMSS--FPLGISVLVSLQHLDLSGTAIRELP-----KE 609 (897)
Q Consensus 542 ~~L~~L~l~~~~~l~~l~~~~~~-----~l~~L~~L~Ls~~~~~~~--lp~~i~~L~~L~~L~L~~~~i~~lp-----~~ 609 (897)
++|++|+++ ++.++......+. ..++|++|+|++| .++. +..-...+.+|++|+|++|.|+... ..
T Consensus 72 ~~L~~L~Ls-~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLA-GVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECT-TSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEec-CCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 456666666 3334433222221 2256666666666 4432 1111223456666666666665321 11
Q ss_pred h-hcCCcCcEecCCCCcccc----ccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEE
Q 036761 610 L-NALENLQCLNLEETHFLI----TIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLS 684 (897)
Q Consensus 610 i-~~L~~L~~L~L~~~~~l~----~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 684 (897)
+ ...++|++|+|++|.+.. .++.. +..+++|++|++++|.+.. .+.......+...++|+.|+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~-----------~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGD-----------EGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHH-----------HHHHHHHHHGGGCSCCCEEE
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCc-----------HHHHHHHHHHhcCCCcCeEE
Confidence 2 234566666666665311 12221 3455666666666654321 00111234455555666666
Q ss_pred EEeCCccc
Q 036761 685 LTLNNFQD 692 (897)
Q Consensus 685 l~~~~~~~ 692 (897)
+++|.+..
T Consensus 218 Ls~N~i~~ 225 (372)
T 3un9_A 218 VAYNGAGD 225 (372)
T ss_dssp CCSSCCCH
T ss_pred CCCCCCCH
Confidence 66665543
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=9.2e-08 Score=97.40 Aligned_cols=173 Identities=9% Similarity=0.041 Sum_probs=102.3
Q ss_pred CCCccc---hHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 155 EPTVGM---QSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 155 ~~~vGr---~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
++++|+ +..++.+..+...+..+.+.|+|++|+||||||+.+++..... ...+.|+.++..... +.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~-- 97 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA-- 97 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG--
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH--
Confidence 567763 3566667666655567889999999999999999999876422 334566665432110 000
Q ss_pred CCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----cccccccCCCC-CCCCcEEEEecCChh---------
Q 036761 232 GLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----FTTVGVPIPPR-DKSASKVVFTTRSTE--------- 297 (897)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----~~~~~~~l~~~-~~~~s~iivTtR~~~--------- 297 (897)
..+.+ .++-+||+||++.... ...+...+... ..+..++|+||+...
T Consensus 98 ------------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 98 ------------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ------------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ------------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 00011 3467899999965321 12221111100 112135777776432
Q ss_pred HhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 298 VCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 298 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
+...+.....+.+++++.++..+++...+....... -.+....+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 112222226789999999999999998774322111 24567888999999887665443
No 170
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.46 E-value=2.4e-06 Score=89.31 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.+++|.++.+++|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~---~~~~v~~~~~~~-- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA---TFIRVVGSELVK-- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC---CEEEEehHHHHH--
Confidence 5689999999999887642 345679999999999999999999876 22 223333222100
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----------------ccccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----------------AFTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 284 (897)
.. ...........+......++.+|+|||++... .+..+...+.. ...
T Consensus 90 ------------~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 ------------KF---IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CS---TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------hc---cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 11111222222333334567899999996421 01111111100 112
Q ss_pred CCcEEEEecCChhHh-----hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC-cchHHHH
Q 036761 285 SASKVVFTTRSTEVC-----GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS-LPLALII 357 (897)
Q Consensus 285 ~~s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~ 357 (897)
++..||.||...... ........+.++..+.++..++++..+.......... ...+++.+.| .|-.+..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 237788888765431 1112234689999999999999998876543222222 3566677766 4544443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=1.3e-06 Score=99.27 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=108.0
Q ss_pred CCCccchHHHHHHHHHhcc-----------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD 217 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 217 (897)
.+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... ..++.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEEeCCCc
Confidence 5689999999999999864 1347899999999999999999998761 23445555554
Q ss_pred CCHHHHHHHHHHHhCCCCchhccccHHHHHHHHH--HHhccCceEEEEeccccccc-----cccccccCCCCCCCCcEEE
Q 036761 218 LQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIY--NVLKEKKFVLLLDDVWQRVA-----FTTVGVPIPPRDKSASKVV 290 (897)
Q Consensus 218 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~--~~l~~~~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~~s~ii 290 (897)
.....+. ..+....... .......... ....+++.+|++|+++.... +..+...+.. .+ ..||
T Consensus 114 ~~~~~~~-~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~-~~iI 183 (516)
T 1sxj_A 114 RSKTLLN-AGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TS-TPLI 183 (516)
T ss_dssp CCHHHHH-HTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CS-SCEE
T ss_pred chHHHHH-HHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cC-CCEE
Confidence 4433222 2222111000 0000000000 01235678999999965321 1222221111 12 3455
Q ss_pred EecCChh---HhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHHHH
Q 036761 291 FTTRSTE---VCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALIITG 359 (897)
Q Consensus 291 vTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 359 (897)
+++.... +.........+.+++++.++..+.+...+.......++ +....|++.++|. +-++..+.
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 5554432 22222334578999999999999998876433322233 3467888999995 44555543
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.38 E-value=6.4e-07 Score=97.00 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=109.3
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCC--CCCCEEEEEEeCCcCCHHHHHHHHHHHhC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ--GDFDFLIWVVVSKDLQIEKIQEIIGKKVG 232 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 232 (897)
.+++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++..... ..+ .+..+..+.......+...+.....
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNFAR 115 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHHhh
Confidence 6789999999999999987655558999999999999999998875211 111 2333444433233222211111000
Q ss_pred CCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hhhh-cCCCceE
Q 036761 233 LFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VCGW-MGAHKNF 308 (897)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~~~-~~~~~~~ 308 (897)
.... ..... .....-.+++-+|++|++... .....+...+...... .++|++|.... +... ......+
T Consensus 116 ~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~-~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 116 LTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGV-TRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp SCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCC-ceEEEEeCchhhCcchhhccCceE
Confidence 0000 00000 000111234569999998642 2223332222222233 67777775543 1110 1112468
Q ss_pred EcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 309 EVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 309 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
.+.+++.++....+...+......-+ .+..+.|++.++|.|..+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887644321222 456789999999998865443
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.37 E-value=1.5e-05 Score=85.38 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=100.5
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.+++|++..++.+..++.. .....|.|+|++|+|||++|+.+++.. ... .+.++.+.......+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~---~~~~~~~~~~~~~~~------ 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM--SAN---IKTTAAPMIEKSGDL------ 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCC---EEEEEGGGCCSHHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEecchhccchhHH------
Confidence 5689999999999888753 345678999999999999999998876 222 233333221111111
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--ccccccccCC------------------CCCCCCcEE
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--AFTTVGVPIP------------------PRDKSASKV 289 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~------------------~~~~~~s~i 289 (897)
...+.. ..+.-+|+||++.... ....+...+. ....+ ..+
T Consensus 98 -----------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 157 (338)
T 3pfi_A 98 -----------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK-FTL 157 (338)
T ss_dssp -----------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC-CEE
T ss_pred -----------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC-eEE
Confidence 111111 2355678888886421 1111111100 00112 466
Q ss_pred EEecCChhHh--h-hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 290 VFTTRSTEVC--G-WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 290 ivTtR~~~v~--~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
|.||...... . .......+.+++++.++...++...+..... .--.+....|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6666654321 0 1122367999999999999999887743221 112456788888999998655443
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.36 E-value=2.5e-06 Score=93.76 Aligned_cols=281 Identities=13% Similarity=0.103 Sum_probs=165.9
Q ss_pred ccccccceEeecccccccccc--cccCCccceeeehhccccccccchhhhcCCCcccEEEccCCC---------------
Q 036761 516 VREWENARRFSLMETQIRTLS--AVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGAR--------------- 578 (897)
Q Consensus 516 ~~~~~~lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~--------------- 578 (897)
+..+.+++.+.+.. .++.+. .|.+|++|+.+.+. . .+..++...|.++..|+.+.+..+-
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp-~-~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIP-D-SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeC-C-CceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 34556788888863 466654 46788899998886 2 3677777778888887776664320
Q ss_pred -----CCccc-CccccCccCCCEeeccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCC
Q 036761 579 -----RMSSF-PLGISVLVSLQHLDLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGD 651 (897)
Q Consensus 579 -----~~~~l-p~~i~~L~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~ 651 (897)
.+..+ ...|.++.+|+.+.+..+ +..++. .+.++.+|+.+.+..+ +..++...+.++..|+.+.+.....
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce
Confidence 00111 234778899999999765 455654 4788999999999876 5777777788999999887765321
Q ss_pred CCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCC
Q 036761 652 WSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHL 731 (897)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L 731 (897)
. .........+|+.+.+..+- ..+.. .....+..++.+.+.... ..+....+..+..|
T Consensus 221 ~-----------------i~~~~~~~~~l~~i~ip~~~-~~i~~--~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l 278 (394)
T 4fs7_A 221 Y-----------------LGDFALSKTGVKNIIIPDSF-TELGK--SVFYGCTDLESISIQNNK--LRIGGSLFYNCSGL 278 (394)
T ss_dssp E-----------------ECTTTTTTCCCCEEEECTTC-CEECS--STTTTCSSCCEEEECCTT--CEECSCTTTTCTTC
T ss_pred E-----------------eehhhcccCCCceEEECCCc-eeccc--ccccccccceeEEcCCCc--ceeecccccccccc
Confidence 1 11112233556666654221 11100 011223355555554332 22333345556666
Q ss_pred CceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccC
Q 036761 732 NRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMAN 809 (897)
Q Consensus 732 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~ 809 (897)
+.+..... . .+...+..+.+|+.+.+.++ ++.++ .+..+.+|+.++|.. .++.+.. ..
T Consensus 279 ~~~~~~~~----~-i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-----------~a 338 (394)
T 4fs7_A 279 KKVIYGSV----I-VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-----------RS 338 (394)
T ss_dssp CEEEECSS----E-ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT-----------TT
T ss_pred ceeccCce----e-eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH-----------Hh
Confidence 66655432 1 22333556778888877653 44443 355677888887754 2444422 24
Q ss_pred CCcccccceeecccccccccccC-CCCCCCCcceeeec
Q 036761 810 LKPFAQLYSLRLGGLTVLKSIYK-RPLPFPCLRDLTVN 846 (897)
Q Consensus 810 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~i~ 846 (897)
+.++.+|+.+.+.. +++.+.. .+..|++|+.+++.
T Consensus 339 F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 56677788777754 3555544 33446677777664
No 175
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.35 E-value=5.8e-06 Score=90.81 Aligned_cols=105 Identities=13% Similarity=0.199 Sum_probs=52.4
Q ss_pred ccCCc-cceeeehhccccccccchhhhcCCCcccEEEccCCC--CCcccC-ccccCccCCCEeeccCCCccccCh-hhhc
Q 036761 538 VPTCL-HLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGAR--RMSSFP-LGISVLVSLQHLDLSGTAIRELPK-ELNA 612 (897)
Q Consensus 538 ~~~~~-~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~--~~~~lp-~~i~~L~~L~~L~L~~~~i~~lp~-~i~~ 612 (897)
|.+|. .|+.+.+. +.++.+....|.++.+|+.+.+..+. .++.++ ..|.++.+|+.+.+..+ ++.++. .+..
T Consensus 59 F~~~~~~L~sI~iP--~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 59 FCNYKYVLTSVQIP--DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTCCSCCCEEEEC--TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred ccCCCCcCEEEEEC--CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 34443 35555554 23555665566666666666665441 233332 23455555555554432 444433 2455
Q ss_pred CCcCcEecCCCCccccccChhhhhcCCccceeecc
Q 036761 613 LENLQCLNLEETHFLITIPRQLISSFSSLIVLRMF 647 (897)
Q Consensus 613 L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~ 647 (897)
+.+|+.+.+..+ ...++...+..+.+|+.+.+.
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred hcccccccccce--eeeecccceeccccccccccc
Confidence 556666665443 244444445555555555554
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.35 E-value=1e-06 Score=97.60 Aligned_cols=182 Identities=15% Similarity=0.090 Sum_probs=104.1
Q ss_pred CCCc-cchH--HHHHHHHHhccCC-ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 155 EPTV-GMQS--QLDKVWSCLVEEP-VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 155 ~~~v-Gr~~--~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
+.|| |... ....+........ ...+.|+|++|+||||||+.+++.......-..+++++.. .+...+...
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~ 178 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDS 178 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHH
Confidence 3455 6433 3334444444333 6789999999999999999999876321111234555433 233344433
Q ss_pred hCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----ccccccccCCC-CCCCCcEEEEecCCh---------
Q 036761 231 VGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----AFTTVGVPIPP-RDKSASKVVFTTRST--------- 296 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~~~l~~-~~~~~s~iivTtR~~--------- 296 (897)
+... . ...+...+..++-+|++||++... ..+.+...+.. ...+ ..||+||.+.
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~~ 246 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQD 246 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCCH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHHH
Confidence 3211 1 112333444467799999996432 12222222111 1223 6788888763
Q ss_pred hHhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 297 EVCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 297 ~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
.+..++.....+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+.-
T Consensus 247 ~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 247 RLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 223334334578999999999999998887432222223 3467788899998865543
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=1.8e-06 Score=93.44 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=103.2
Q ss_pred CCCccchHHHHHHHHHh-ccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCE--------------------E
Q 036761 155 EPTVGMQSQLDKVWSCL-VEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDF--------------------L 209 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~--------------------~ 209 (897)
.+++|.+..++.+.+++ ..+..+.+.|+|+.|+||||+|+.++....... .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 56899999999999988 665555599999999999999999988531111 0111 1
Q ss_pred EEEEeCCcC-CHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc--cccccccccCCCCCCCC
Q 036761 210 IWVVVSKDL-QIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSA 286 (897)
Q Consensus 210 ~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~ 286 (897)
+.+..+... ......++++..+..... ..... .+ .-+.+++-++|+|++... .....+...+.....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~- 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN- 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT-
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC-
Confidence 111111100 000011122222110000 00000 00 002346679999999752 2222232222222233
Q ss_pred cEEEEecCChh-Hh-hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHHH
Q 036761 287 SKVVFTTRSTE-VC-GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIITG 359 (897)
Q Consensus 287 s~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~~ 359 (897)
..+|++|.+.. +. ........+++++++.++....+...+......-+. .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 67777776632 21 112233678999999999999998877432211110 2457888899999887654443
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=2.1e-05 Score=81.27 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred CCCccchHHHHHHHH-------Hhc---cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHH
Q 036761 155 EPTVGMQSQLDKVWS-------CLV---EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQ 224 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~-------~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 224 (897)
..++|....++++.. .+. ....+.+.|+|++|+|||++|+.+++.. ... .+.+..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~--~~~---~~~i~~~~~------- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES--NFP---FIKICSPDK------- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH--TCS---EEEEECGGG-------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEeCHHH-------
Confidence 467888887776665 232 2456789999999999999999999875 222 222222210
Q ss_pred HHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc-----------cc-cccccccCC---CCCCCCcEE
Q 036761 225 EIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR-----------VA-FTTVGVPIP---PRDKSASKV 289 (897)
Q Consensus 225 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~-~~~~~~~l~---~~~~~~s~i 289 (897)
+.... ...........+......++.+|+|||++.. .. ...+...+. ..... ..|
T Consensus 101 ------~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~-~~i 170 (272)
T 1d2n_A 101 ------MIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRK-LLI 170 (272)
T ss_dssp ------CTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCE-EEE
T ss_pred ------hcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCC-EEE
Confidence 10000 0011112222233333466889999998642 01 111111111 11222 457
Q ss_pred EEecCChhHhhh---cCC-CceEEcCCCCh-HHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc------chHHHHH
Q 036761 290 VFTTRSTEVCGW---MGA-HKNFEVGCLSA-NDARELFRQNVGEETLNGHPDIRELSETVTKECGSL------PLALIIT 358 (897)
Q Consensus 290 ivTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl------Plai~~~ 358 (897)
|.||...+.... .+. ...+.+++++. ++...++..... .+ .+....|++.+.|. +-++..+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----FK---DKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----SC---HHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----CC---HHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 778877654322 111 45688999988 666666655321 11 34567888888773 3333333
Q ss_pred HhhhhcCCChHHHHHHHHHHccc
Q 036761 359 GRAMACKKTPEEWRDAIKVLQTS 381 (897)
Q Consensus 359 ~~~l~~~~~~~~w~~~~~~l~~~ 381 (897)
-.+.. ......+..+++.+...
T Consensus 243 ~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHhh-hchHHHHHHHHHHHHHc
Confidence 33222 23345566655555443
No 179
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.30 E-value=2.9e-06 Score=93.71 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCCCccchHHH---HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 154 IEPTVGMQSQL---DKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 154 ~~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
.+++||.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++.. ...| ..++... .....+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~f---~~l~a~~-~~~~~ir~----- 93 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA--NADV---ERISAVT-SGVKEIRE----- 93 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT--TCEE---EEEETTT-CCHHHHHH-----
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh--CCCe---EEEEecc-CCHHHHHH-----
Confidence 36789999988 778888877777889999999999999999999876 2222 2222211 12222111
Q ss_pred hCCCCchhccccHHHHHHHHH-HHhccCceEEEEeccccc--cccccccccCCCCCCCCcEEEE-ecCChhH---hhhcC
Q 036761 231 VGLFNDSWMKKNLAERAVDIY-NVLKEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVF-TTRSTEV---CGWMG 303 (897)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iiv-TtR~~~v---~~~~~ 303 (897)
...... ....+++.+|++|++... ...+.+...+.. +...+|. ||.+... .....
T Consensus 94 ---------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~---~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 94 ---------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED---GTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp ---------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT---TSCEEEEEESSCGGGSSCHHHHT
T ss_pred ---------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc---CceEEEecCCCCcccccCHHHhC
Confidence 111111 112467889999999753 233444333333 2134444 5555431 11223
Q ss_pred CCceEEcCCCChHHHHHHHHHHhCCCcc----CCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 304 AHKNFEVGCLSANDARELFRQNVGEETL----NGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 304 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
....+.+++++.++...++.+.+..... ....--.+....|++.++|.+-.+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 3457899999999999999887643110 001112456788888899987655433
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.27 E-value=2.1e-05 Score=80.92 Aligned_cols=180 Identities=12% Similarity=0.072 Sum_probs=100.0
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~--- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVE--- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSS---
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHh---
Confidence 578999988888766542 1 234568899999999999999999876 222 33444443211
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc-------------c----cccccccCCC-CCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-------------A----FTTVGVPIPP-RDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~----~~~~~~~l~~-~~~ 284 (897)
. ............+.......+.+|++|+++... . +..+...+.. ...
T Consensus 78 ----------~----~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 78 ----------V----IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ----------S----STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ----------h----ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 0 011111222223333334567899999997531 0 1111111111 112
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
.+..||.||....... .. .....+.++..+.++-.+++...+.... ...........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 2267777776654211 11 2235688999999999999988764322 112222235778888887654 44433
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.24 E-value=4.3e-06 Score=88.49 Aligned_cols=151 Identities=15% Similarity=0.150 Sum_probs=85.6
Q ss_pred CCccchHHHHHHHHHhc---------------cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCH
Q 036761 156 PTVGMQSQLDKVWSCLV---------------EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQI 220 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 220 (897)
+++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47899988888876543 234457899999999999999988876633222211112333211
Q ss_pred HHHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc-----------cccccccccCCCCCCCCcEE
Q 036761 221 EKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR-----------VAFTTVGVPIPPRDKSASKV 289 (897)
Q Consensus 221 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~~s~i 289 (897)
.+... ............+... +.-+|++|+++.. .....+...+.....+ ..|
T Consensus 109 ---------~l~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~-~~~ 172 (309)
T 3syl_A 109 ---------DLVGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDD-LVV 172 (309)
T ss_dssp ---------GTCCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTT-CEE
T ss_pred ---------Hhhhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCC-EEE
Confidence 11000 0111111222222221 3459999999732 1222333223222333 678
Q ss_pred EEecCChhH----------hhhcCCCceEEcCCCChHHHHHHHHHHhC
Q 036761 290 VFTTRSTEV----------CGWMGAHKNFEVGCLSANDARELFRQNVG 327 (897)
Q Consensus 290 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 327 (897)
|.||..... .+++ ...+.+++++.++..+++...+.
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 888865432 2221 25789999999999999988764
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.22 E-value=4.2e-05 Score=80.88 Aligned_cols=181 Identities=12% Similarity=0.100 Sum_probs=103.5
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.+..++.|.+.+.- ...+.|.|+|++|+|||+||+.+++... . ...+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~--~~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N--STFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S--CEEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C--CcEEEEEhHHHHh---
Confidence 5678999998888776531 1346789999999999999999998761 1 1233344432110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc-------------ccccccc---CCCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA-------------FTTVGVP---IPPRDKSA 286 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~~~ 286 (897)
.+.......+...+...-..++.+|+||+++.... ...+... +.....+
T Consensus 85 --------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~- 149 (322)
T 1xwi_A 85 --------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG- 149 (322)
T ss_dssp --------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT-
T ss_pred --------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC-
Confidence 00111222222222223345678999999964310 0111111 1111222
Q ss_pred cEEEEecCChhH---hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHHHHh
Q 036761 287 SKVVFTTRSTEV---CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALIITGR 360 (897)
Q Consensus 287 s~iivTtR~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~~ 360 (897)
..||.||..... +-.-.....+.++..+.++-.++++.++....... -......|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566667765432 11113345688999999999999998875432111 134567888888886 444554443
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.21 E-value=7.1e-06 Score=87.40 Aligned_cols=172 Identities=12% Similarity=0.072 Sum_probs=100.0
Q ss_pred CCCccchHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
++++|.+..++.+.+++..+.. .++.+.|++|+|||++|+.+++... ..++.++.+.. ....+...+......
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~i~~~~~~~~~~ 99 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDFVRGPLTNFASA 99 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHHHHTHHHHHHHB
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHHHHHHHHHHHhh
Confidence 6789999999999999987544 5778888899999999999998762 23445554432 222221111110000
Q ss_pred CCchhccccHHHHHHHHHHHhccCceEEEEecccccc---ccccccccCCCCCCCCcEEEEecCChhH-----hhhcCCC
Q 036761 234 FNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV---AFTTVGVPIPPRDKSASKVVFTTRSTEV-----CGWMGAH 305 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~~~~~~~~l~~~~~~~s~iivTtR~~~v-----~~~~~~~ 305 (897)
....+++-++++||++... ....+...+...... .++|+||....- .++ .
T Consensus 100 ------------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~-~~iI~~~n~~~~l~~~l~sR---~ 157 (324)
T 3u61_B 100 ------------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSN-CSIIITANNIDGIIKPLQSR---C 157 (324)
T ss_dssp ------------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGG-CEEEEEESSGGGSCTTHHHH---S
T ss_pred ------------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCC-cEEEEEeCCccccCHHHHhh---C
Confidence 0012367899999997543 223332222211223 678888876531 222 2
Q ss_pred ceEEcCCCChHHHHHHH-------HHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHH
Q 036761 306 KNFEVGCLSANDARELF-------RQNVGEETLNGHPDIRELSETVTKECGSLPLALI 356 (897)
Q Consensus 306 ~~~~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~ 356 (897)
..+.+++++.++-.+++ ...+.......++ .+....|++.++|.+-.+.
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 46899999988854333 2222222111111 2567788888888776433
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.21 E-value=2.4e-05 Score=84.22 Aligned_cols=180 Identities=14% Similarity=0.113 Sum_probs=103.3
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc---
Confidence 5689999999999887631 345688999999999999999999876 21 234454432111
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHH-HhccCceEEEEecccccc-------------ccccccccC---CCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYN-VLKEKKFVLLLDDVWQRV-------------AFTTVGVPI---PPRDKS 285 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~~-------------~~~~~~~~l---~~~~~~ 285 (897)
. .... .......+.. .-..++.+|+||+++... ....+...+ ......
T Consensus 156 -----------~---~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 -----------K---WVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp -----------S---STTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCC
T ss_pred -----------c---ccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0011 1112222222 223567899999995321 011111111 111122
Q ss_pred CcEEEEecCChhH---hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC-cchHHHHHHh
Q 036761 286 ASKVVFTTRSTEV---CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS-LPLALIITGR 360 (897)
Q Consensus 286 ~s~iivTtR~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~~~~~ 360 (897)
+..||.||..... +-.......+.+...+.++..+++...+....... ..+....|++.+.| .+-.+..+..
T Consensus 221 ~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2566767765432 11112334678999999999999988764332111 13457788888888 4555655543
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.18 E-value=1.9e-05 Score=83.85 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=103.2
Q ss_pred CCCccchHHHHHHHHHhc----------c--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV----------E--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.|.+.+. . ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NST---FFSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH--TCE---EEEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH--CCC---EEEEchH------H
Confidence 568999999999988772 1 124578999999999999999999876 222 2333321 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHH-HHhccCceEEEEeccccccc-------------cccccc---cCCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIY-NVLKEKKFVLLLDDVWQRVA-------------FTTVGV---PIPPRDKS 285 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~~-------------~~~~~~---~l~~~~~~ 285 (897)
+ ... +... .+.....+. ..-..++.+|+||+++.... ...+.. .+.....+
T Consensus 87 l----~~~-------~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 87 L----VSK-------WMGE-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp H----HTT-------TGGG-HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred H----hhc-------ccch-HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 1 110 0111 122222232 23345678999999974211 111111 11112223
Q ss_pred CcEEEEecCChhHhh---hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHHHH
Q 036761 286 ASKVVFTTRSTEVCG---WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALIITG 359 (897)
Q Consensus 286 ~s~iivTtR~~~v~~---~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 359 (897)
..||.||....... .-.....+.++..+.++-.++++..+........ ......|++.+.|. +-.|..+.
T Consensus 155 -v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 -VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp -EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred -eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 67777777643211 1123456788999999999999998865431111 34567888888774 44454443
No 186
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=5.9e-06 Score=89.85 Aligned_cols=193 Identities=15% Similarity=0.113 Sum_probs=102.0
Q ss_pred CCCccchHHHHHH---HHHhccCCc--eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe----CCcCCHHHHHH
Q 036761 155 EPTVGMQSQLDKV---WSCLVEEPV--GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV----SKDLQIEKIQE 225 (897)
Q Consensus 155 ~~~vGr~~~~~~l---~~~L~~~~~--~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~~~~~~~ 225 (897)
+++||++..++.+ .+.+..+.. +.+.|+|++|+|||++|+.+++.......| +.+.. +......+...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHHH
Confidence 5789999987764 444444433 589999999999999999999987322122 22222 12233333333
Q ss_pred HHHHHh-CC--------------------CC-------chhccccHHHHHHHHHHHh-----ccC----ceEEEEecccc
Q 036761 226 IIGKKV-GL--------------------FN-------DSWMKKNLAERAVDIYNVL-----KEK----KFVLLLDDVWQ 268 (897)
Q Consensus 226 ~i~~~l-~~--------------------~~-------~~~~~~~~~~~~~~l~~~l-----~~~----~~LlVlDdv~~ 268 (897)
...... +. .. ..........+...+.... .++ +.+|++|++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 332221 00 00 0000000122222222211 233 35999999975
Q ss_pred c--cccccccccCCCCCCCCcEEEEecCC-----------------hhHhhhcCCCceEEcCCCChHHHHHHHHHHhCCC
Q 036761 269 R--VAFTTVGVPIPPRDKSASKVVFTTRS-----------------TEVCGWMGAHKNFEVGCLSANDARELFRQNVGEE 329 (897)
Q Consensus 269 ~--~~~~~~~~~l~~~~~~~s~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 329 (897)
. .....+...+...... .++++|.. +.+.++ ...+.+++++.++..+++...+...
T Consensus 201 l~~~~~~~L~~~le~~~~~--~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 201 LDIESFSFLNRALESDMAP--VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp SBHHHHHHHHHHTTCTTCC--EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHhhCcCCC--eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHHHHHHHHHHHc
Confidence 3 2233333333332222 34444431 122222 2448999999999999999877533
Q ss_pred ccCCCCcHHHHHHHHHHHcC-CcchHHHHH
Q 036761 330 TLNGHPDIRELSETVTKECG-SLPLALIIT 358 (897)
Q Consensus 330 ~~~~~~~~~~~~~~i~~~~~-glPlai~~~ 358 (897)
.... -.+....|++.+. |.|-.+..+
T Consensus 276 ~~~~---~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DVEM---SEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TCCB---CHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCC---CHHHHHHHHHHhcCCCHHHHHHH
Confidence 2111 2456788888887 777655433
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.16 E-value=2.5e-05 Score=83.32 Aligned_cols=167 Identities=12% Similarity=0.070 Sum_probs=100.5
Q ss_pred hHHHHHHHHHhccCCc-eEEEEEcCCCCcHHHHHHHHHhcccCCC--------------------CCCEEEEEEeCCcCC
Q 036761 161 QSQLDKVWSCLVEEPV-GIVGLYGMGGVGKTTLLTHLHNKFLGQG--------------------DFDFLIWVVVSKDLQ 219 (897)
Q Consensus 161 ~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~~~~~~~ 219 (897)
++..+.+.+.+..+.. +.+.++|+.|+||||+|+.+++...... +++ ..++.....
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~-- 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG-- 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT--
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc--
Confidence 5566777777776654 5799999999999999999988653211 122 222222100
Q ss_pred HHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh-----ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEe
Q 036761 220 IEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-----KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFT 292 (897)
Q Consensus 220 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivT 292 (897)
. .....++.. .+.+.+ .+++-++|+|+++.. .....+...+...... +.+|++
T Consensus 85 ---------------~---~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~-~~~Il~ 144 (334)
T 1a5t_A 85 ---------------K---NTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAE-TWFFLA 144 (334)
T ss_dssp ---------------C---SSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTT-EEEEEE
T ss_pred ---------------C---CCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCC-eEEEEE
Confidence 0 011122221 222222 246779999999753 2333443334333334 777777
Q ss_pred cCChh-H-hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 293 TRSTE-V-CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 293 tR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
|.+.+ + .........+.+++++.++..+.+.+...- + .+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM-----S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC-----C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 76653 2 111223457999999999999999887611 1 245678999999999766543
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.15 E-value=4.7e-05 Score=79.84 Aligned_cols=177 Identities=12% Similarity=0.059 Sum_probs=101.7
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.++.+....
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~---~~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SA---TFLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TC---EEEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CC---CeEEeeHHHHhh---
Confidence 5689999999999887632 235688999999999999999999876 22 233444433211
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHH-HHHHhccCceEEEEeccccccc-------------ccccc---ccCCCC-CC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVD-IYNVLKEKKFVLLLDDVWQRVA-------------FTTVG---VPIPPR-DK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~---~~l~~~-~~ 284 (897)
. ... ........ +......++.+|++|+++.... ...+. ..++.. ..
T Consensus 93 -----------~---~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -----------K---YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -----------S---SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -----------c---ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 011 11222222 2223345678999999964211 00010 111111 11
Q ss_pred CCcEEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 285 SASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 285 ~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
.+..||.||..... ... ....+.++..+.++...++...+....... -......+++.+.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 22567777776432 222 235678888888888888887764332111 13456788889988875 45444
Q ss_pred H
Q 036761 359 G 359 (897)
Q Consensus 359 ~ 359 (897)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=7.6e-07 Score=83.60 Aligned_cols=86 Identities=9% Similarity=0.104 Sum_probs=50.3
Q ss_pred CccEEEEeCCCCCCC--CcccccCCCccEEEEecCchhhhhhcccccCCccccccCCCc----ccccceeeccccccccc
Q 036761 756 SLKKIQIYGCHRLKD--LTFLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKP----FAQLYSLRLGGLTVLKS 829 (897)
Q Consensus 756 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~ 829 (897)
+|++|++++|. +++ +..+..+++|+.|+|++|..+++-.- ..+.. .++|++|+|++|++++.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 56777777764 443 22355667777777777766655311 01111 34677777777776654
Q ss_pred ccC-CCCCCCCcceeeecCCccCCC
Q 036761 830 IYK-RPLPFPCLRDLTVNSCDELRK 853 (897)
Q Consensus 830 ~~~-~~~~l~~L~~L~i~~C~~L~~ 853 (897)
-.. ....+++|++|++++||+++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 221 123467777777777777765
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=6.1e-07 Score=84.23 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=31.5
Q ss_pred CCCCccEEEEeCCCCCCCCc--ccccC----CCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccc
Q 036761 753 DFRSLKKIQIYGCHRLKDLT--FLLFA----PNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTV 826 (897)
Q Consensus 753 ~l~~L~~L~L~~c~~l~~l~--~l~~l----~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 826 (897)
.+++|++|+|++|..+++-. .+..+ ++|++|+|++|..+++-.- ..+..+++|++|++++|+.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-----------~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-----------IALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-----------HHGGGCTTCCEEEEESCTT
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-----------HHHhcCCCCCEEECCCCCC
Confidence 45555555555554444321 22222 3455555555555544311 1233455666666666655
Q ss_pred ccc
Q 036761 827 LKS 829 (897)
Q Consensus 827 l~~ 829 (897)
++.
T Consensus 152 Itd 154 (176)
T 3e4g_A 152 VKE 154 (176)
T ss_dssp CCC
T ss_pred CCc
Confidence 544
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.13 E-value=6.9e-05 Score=81.80 Aligned_cols=179 Identities=10% Similarity=0.020 Sum_probs=100.5
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhcc--
Confidence 5689999999999887721 234688999999999999999998875 21 2334443332110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--------c-----ccccccc---CCCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--------A-----FTTVGVP---IPPRDKSA 286 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~-----~~~~~~~---l~~~~~~~ 286 (897)
............+...-...+.+|+||+++... . ...+... +.......
T Consensus 188 ---------------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 188 ---------------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred ---------------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 001111112222222223456799999996430 0 0011110 11111122
Q ss_pred cEEEEecCChhHh---hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcch-HHHHH
Q 036761 287 SKVVFTTRSTEVC---GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPL-ALIIT 358 (897)
Q Consensus 287 s~iivTtR~~~v~---~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPl-ai~~~ 358 (897)
..||.||...... -.......+.+...+.++..+++...+...... -..+....|++.+.|..- ++..+
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP---LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC---SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5667677654321 111223468899999999999998887543311 123456788888888554 55444
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.13 E-value=7.1e-06 Score=87.96 Aligned_cols=173 Identities=14% Similarity=0.171 Sum_probs=102.1
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC-EEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD-FLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.+++|.+..++.|...+..+..+.+.++|+.|+||||+|+.+++..... .+. .+..++.+......
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~------------ 91 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGID------------ 91 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHH------------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHH------------
Confidence 4578999999999888887766559999999999999999999875311 111 12222222211221
Q ss_pred CCchhccccHHHHHHHHHHHh------ccCceEEEEeccccc--cccccccccCCCCCCCCcEEEEecCChh-Hh-hhcC
Q 036761 234 FNDSWMKKNLAERAVDIYNVL------KEKKFVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRSTE-VC-GWMG 303 (897)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l------~~~~~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~~-v~-~~~~ 303 (897)
.....+.... .+.+-++|+|+++.. .....+...+...... +++|++|.... +. ....
T Consensus 92 -----------~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~-~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 92 -----------VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKN-TRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp -----------HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTT-EEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCC-eEEEEEecCccccchhHHh
Confidence 1111121111 234678999998642 2223332222222233 67777776542 11 1112
Q ss_pred CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHH
Q 036761 304 AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLAL 355 (897)
Q Consensus 304 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai 355 (897)
....+.+.+++.++..+.+...+......-+ .+..+.|++.++|.+--+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 2346899999999999988877632221111 345778888999887644
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.09 E-value=2.5e-05 Score=83.87 Aligned_cols=179 Identities=15% Similarity=0.098 Sum_probs=101.9
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. .. ..+.+..+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~---~~~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NS---TFFSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TC---EEEEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CC---CEEEeeHH------H
Confidence 5689999999999877621 123468899999999999999999987 22 22333322 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc-------------ccccccc---CCCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA-------------FTTVGVP---IPPRDKSA 286 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~---l~~~~~~~ 286 (897)
+ .... ...........+...-..++.+|+||+++.... ...+... +.....+
T Consensus 120 l----~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~- 187 (355)
T 2qp9_X 120 L----VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG- 187 (355)
T ss_dssp H----HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC-
T ss_pred H----hhhh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC-
Confidence 1 1110 111122222222222345788999999974211 1111111 1111223
Q ss_pred cEEEEecCChhH---hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHHHH
Q 036761 287 SKVVFTTRSTEV---CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALIITG 359 (897)
Q Consensus 287 s~iivTtR~~~v---~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 359 (897)
..||.||..... +-.-.....+.++..+.++-.+++..++........ ......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 667767765532 111134456889999999999999988754321111 34567888888884 44454443
No 194
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=1.9e-06 Score=87.48 Aligned_cols=108 Identities=20% Similarity=0.278 Sum_probs=75.2
Q ss_pred ccCCcccee--eehhccccccccc---hhhhcCCCcccEEEccCCCCCccc---CccccCccCCCEeeccCCCccccChh
Q 036761 538 VPTCLHLLT--LFLIFNEELEMIT---SDFFKSMPRLKVLNLSGARRMSSF---PLGISVLVSLQHLDLSGTAIRELPKE 609 (897)
Q Consensus 538 ~~~~~~L~~--L~l~~~~~l~~l~---~~~~~~l~~L~~L~Ls~~~~~~~l---p~~i~~L~~L~~L~L~~~~i~~lp~~ 609 (897)
+...+.|.. ++++ .+....++ .....++++|+.|+|++| .++.+ |..+..+++|++|+|++|.|+.+ ..
T Consensus 137 l~~dp~L~~~~l~l~-~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVV-LNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCC-TTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GG
T ss_pred cCCCcchhhcCcccc-CCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hh
Confidence 444555655 5555 33232222 222357899999999999 66654 45667899999999999999877 34
Q ss_pred hhcCC--cCcEecCCCCccccccCh------hhhhcCCccceeeccc
Q 036761 610 LNALE--NLQCLNLEETHFLITIPR------QLISSFSSLIVLRMFG 648 (897)
Q Consensus 610 i~~L~--~L~~L~L~~~~~l~~lp~------~~~~~l~~L~~L~l~~ 648 (897)
+..+. +|++|+|++|.+...+|. .++..+++|+.|+-..
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 55555 999999999987665552 3477889998887543
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.07 E-value=1.2e-05 Score=77.72 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=41.6
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999987667788999999999999999998876
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.04 E-value=7.1e-05 Score=82.94 Aligned_cols=181 Identities=14% Similarity=0.095 Sum_probs=100.9
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++... . ...+.++.+.-
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~--~~~~~v~~~~l----- 204 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N--STFFSISSSDL----- 204 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--S--SEEEEECCC-------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--C--CCEEEEeHHHH-----
Confidence 5689999999999877631 2346789999999999999999998761 1 12222332211
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc-------------cccccccCCCC--CCCCc
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA-------------FTTVGVPIPPR--DKSAS 287 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~~~l~~~--~~~~s 287 (897)
.... .+. .......+ +...-..++.+|+||+++.... ...+...+... ..++.
T Consensus 205 -~~~~---~g~-----~~~~~~~~---f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 205 -VSKW---LGE-----SEKLVKNL---FQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHH---HHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -Hhhh---cch-----HHHHHHHH---HHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1100 010 01111111 2222235678999999974310 11111111110 12236
Q ss_pred EEEEecCChhHh---hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHHHH
Q 036761 288 KVVFTTRSTEVC---GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALIITG 359 (897)
Q Consensus 288 ~iivTtR~~~v~---~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~~~ 359 (897)
.||.||...... -.-.....+.++..+.++...+|..++........ ......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 777777665321 11123456788888999999999888754321111 24567888888884 44454443
No 197
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.02 E-value=2.5e-05 Score=83.04 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=96.3
Q ss_pred CCCc-cc--hHHHHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTV-GM--QSQLDKVWSCLVEE--PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~v-Gr--~~~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+.|| |. ......+......+ ....+.|+|++|+||||||+.+++..... . ..+++++.. .+...+..
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~ 82 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVE 82 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHH
Confidence 4565 53 33344455555443 34678999999999999999999876322 1 234455432 23333333
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----ccccccccCCC-CCCCCcEEEEecCChh-------
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----AFTTVGVPIPP-RDKSASKVVFTTRSTE------- 297 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~~~~~~~~l~~-~~~~~s~iivTtR~~~------- 297 (897)
.+.. .... .+...+ .++-+|++||+.... ....+...+.. ...+ ..||+||.+..
T Consensus 83 ~~~~-------~~~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 83 HLKK-------GTIN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHH-------TCHH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTSC
T ss_pred HHHc-------CcHH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHhh
Confidence 2210 0111 122222 246799999996532 11222222111 0123 57787776431
Q ss_pred --HhhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 298 --VCGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 298 --v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
+...+.....+++++ +.++..+++...+......-+ .+....|++.+ |..-.
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 223333335689999 999999999888743221222 45577888888 76543
No 198
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=4.8e-06 Score=89.37 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=10.1
Q ss_pred CCCCCCEEEEEeCCcc
Q 036761 676 GLEHLEVLSLTLNNFQ 691 (897)
Q Consensus 676 ~l~~L~~L~l~~~~~~ 691 (897)
.+++|+.|++..|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp TCTTCCEEEEESCTTH
T ss_pred CCCCcCEEeCCCCCCc
Confidence 3566777777666654
No 199
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.99 E-value=4.4e-05 Score=85.24 Aligned_cols=149 Identities=14% Similarity=0.164 Sum_probs=83.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---CC-C-EEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---DF-D-FLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f-~-~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.++|||+.+++.+.+.+......-+.|+|++|+|||++|+.+++...... .. + .++.+.++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 56899999999999999766566778999999999999999988752111 01 1 12222222 0
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHh-------hhc
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVC-------GWM 302 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~-------~~~ 302 (897)
.. .......+...+...-..++.+|++| ........+...+. .+..++|.+|...+.. ...
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00 00000111122222223567889999 22222222333332 2236777766655411 011
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCC
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGE 328 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~ 328 (897)
.....+.++..+.++..+++...+..
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHHH
Confidence 12246899999999999999977643
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.99 E-value=7.3e-06 Score=87.96 Aligned_cols=117 Identities=17% Similarity=0.230 Sum_probs=71.6
Q ss_pred hhhcCCCcccEEEccCCCCCcccCccccCccCCCEeeccCCCccc-cChhhh--cCCcCcEecCCCC--cc-----cccc
Q 036761 561 DFFKSMPRLKVLNLSGARRMSSFPLGISVLVSLQHLDLSGTAIRE-LPKELN--ALENLQCLNLEET--HF-----LITI 630 (897)
Q Consensus 561 ~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~~L~~L~L~~~~i~~-lp~~i~--~L~~L~~L~L~~~--~~-----l~~l 630 (897)
.++..+++|+.|+|++|..+ .+|. + .+++|++|+|..|.+.. ....+. .+++|++|+|+.+ .. ...+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44677899999999887333 3443 4 37899999998887652 112333 6889999988532 11 1111
Q ss_pred Chhh-hhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 631 PRQL-ISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 631 p~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
...+ ...+++|++|++.+|.+... ..........+++|+.|+++.|.+..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~------------~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNV------------VVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHH------------HHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchH------------HHHHHHhCccCCCCCEEECCCCCCCh
Confidence 1110 13578999999987763210 00111222357889999998887755
No 201
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.98 E-value=0.00013 Score=79.95 Aligned_cols=291 Identities=12% Similarity=0.128 Sum_probs=138.6
Q ss_pred ceEeecccccccccc--cccCCccceeeehhcc--ccccccchhhhcCCCcccEEEccCCCCCcccC-ccccCccCCCEe
Q 036761 522 ARRFSLMETQIRTLS--AVPTCLHLLTLFLIFN--EELEMITSDFFKSMPRLKVLNLSGARRMSSFP-LGISVLVSLQHL 596 (897)
Q Consensus 522 lr~L~l~~~~~~~l~--~~~~~~~L~~L~l~~~--~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp-~~i~~L~~L~~L 596 (897)
++.+.+.. .++.+. .|.+|.+|+.+.+..+ ..++.++...|.++..|+.+.+..+ ++.++ ..+..+.+|+.+
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccc
Confidence 55565543 244443 3566777777776532 2356666666777777776666554 33333 335666667776
Q ss_pred eccCCCccccCh-hhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccCCC----CCCCCC-------------
Q 036761 597 DLSGTAIRELPK-ELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDW----SPNGKK------------- 658 (897)
Q Consensus 597 ~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~----~~~~~~------------- 658 (897)
.+..+ ++.++. .+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+...-.. .+....
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccc
Confidence 66532 333332 3555666666666544 34444443332 34555544321100 000000
Q ss_pred -CCCccccC---ccchhHHhcCCCCCCEEEEEeCCcccHHHHHhchhccccceeEEEeccCCCcccccccccccCCCCce
Q 036761 659 -NDSDLFSG---GDLLVEALRGLEHLEVLSLTLNNFQDLQCVLKSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRL 734 (897)
Q Consensus 659 -~~~~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L 734 (897)
.....+.. .............+..+.+.. .+..+.. .....+..|+.+.+... ...+....+.++++|+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~--~aF~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i 293 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIET--HAFDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDI 293 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECT--TTTTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred cccceeecccccccccccccccccccceEEcCC-cceEccc--ceeeecccccEEecccc--cceecCcccccccccccc
Confidence 00000000 000000000111122222110 0110000 01122345666655432 223333456778888888
Q ss_pred eeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCc
Q 036761 735 WIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKP 812 (897)
Q Consensus 735 ~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~ 812 (897)
.+.. .++.++ ...+..+.+|+++.|..+ ++.+. .+..+.+|+.+.|.. .++.+.. ..+.+
T Consensus 294 ~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~-----------~aF~~ 355 (394)
T 4gt6_A 294 EFSS--RITELP-ESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPE-----------SAFSN 355 (394)
T ss_dssp ECCT--TCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCG-----------GGGTT
T ss_pred cCCC--cccccC-ceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhH-----------hHhhC
Confidence 8753 455543 344677888999888653 55544 466788899988864 2444432 25677
Q ss_pred ccccceeecccccccccccCCCCCCCCcceeee
Q 036761 813 FAQLYSLRLGGLTVLKSIYKRPLPFPCLRDLTV 845 (897)
Q Consensus 813 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~i 845 (897)
+++|+.+.+.+... .+ ..+..+.+|+.+.+
T Consensus 356 C~~L~~i~~~~~~~--~~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 356 CTALNNIEYSGSRS--QW-NAISTDSGLQNLPV 385 (394)
T ss_dssp CTTCCEEEESSCHH--HH-HTCBCCCCC-----
T ss_pred CCCCCEEEECCcee--eh-hhhhccCCCCEEEe
Confidence 88899988876432 22 23334455555554
No 202
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.97 E-value=0.0001 Score=77.17 Aligned_cols=174 Identities=15% Similarity=0.145 Sum_probs=99.9
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.+++|.+..+++|.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~---~~i~v~------~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA---NFISIK------GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---EEEEEC------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC---CEEEEE------hH
Confidence 5689999988888876642 345679999999999999999999876 22 222222 22
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 284 (897)
++.... .+. ........+.......+.+|++|+++.... ...+...+.. ...
T Consensus 84 ~l~~~~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 84 ELLTMW---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHH---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred HHHhhh---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 332222 111 111222223333345689999999964110 1111111100 112
Q ss_pred CCcEEEEecCChhHh-h-hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchH
Q 036761 285 SASKVVFTTRSTEVC-G-WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLA 354 (897)
Q Consensus 285 ~~s~iivTtR~~~v~-~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPla 354 (897)
.+..||.||...... . .. .....+.++..+.++-.++++..+..........+ ..+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 226788888765431 1 11 23357899999999999999887754332222233 3555667776644
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.93 E-value=5.6e-06 Score=79.94 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=64.3
Q ss_pred hcCCCcccEEEccCCCCCc-----ccCccccCccCCCEeeccCCCcc-----ccChhhhcCCcCcEecCCCCccccc---
Q 036761 563 FKSMPRLKVLNLSGARRMS-----SFPLGISVLVSLQHLDLSGTAIR-----ELPKELNALENLQCLNLEETHFLIT--- 629 (897)
Q Consensus 563 ~~~l~~L~~L~Ls~~~~~~-----~lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~--- 629 (897)
+...+.|++|+|++|..++ .+...+...++|++|+|++|.|. .+...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 4555666666666652222 13334455566666666666665 2344455556677777777654221
Q ss_pred -cChhhhhcCCccceeec--cccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCccc
Q 036761 630 -IPRQLISSFSSLIVLRM--FGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQD 692 (897)
Q Consensus 630 -lp~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 692 (897)
+... +...++|++|++ .+|.+.. .+.......+...++|+.|++++|.+..
T Consensus 112 ~l~~~-L~~n~~L~~L~L~~~~N~i~~-----------~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEA-LQSNTSLIELRIDNQSQPLGN-----------NVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHG-GGGCSSCCEEECCCCSSCCCH-----------HHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHH-HHhCCCceEEEecCCCCCCCH-----------HHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 455566777777 4444221 1111234456666788888888877653
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00022 Score=76.07 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=100.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~--~~~---f~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT--DCK---FIRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH--TCE---EEEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh--CCC---ceEEEhHHhhc--
Confidence 4567899988888765531 245678899999999999999999987 222 33444332110
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----------c------cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----------A------FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------~------~~~~~~~l~~-~~~ 284 (897)
.+...+...+...+...-...+.+|++|+++... + ...+...+.. ...
T Consensus 221 ---------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 ---------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred ---------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0112222222222333334578999999996421 0 0111111110 112
Q ss_pred CCcEEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
.+..||.||...+. ...-.-+..+.++..+.++-.++|+.++.......+.++ ..|++.+.|.-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 22567778876544 111134567899999999999999888755432333333 56677777753
No 205
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.88 E-value=1.4e-05 Score=73.64 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=35.8
Q ss_pred CCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|+...++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999887743 333457899999999999999999875
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=6.1e-05 Score=78.57 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=89.1
Q ss_pred cchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccC--CCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCC
Q 036761 159 GMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLG--QGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFN 235 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 235 (897)
|-++.++.|.+.+..+..+...++|+.|+||||+|+.+++.... ..+.+. .++..+. ...+.++ +.+.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 45566778888887766789999999999999999999875211 123343 4444332 2333333 22333332111
Q ss_pred chhccccHHHHHHHHHHHhccCceEEEEecccc--ccccccccccCCCCCCCCcEEEEecCCh-hHhhhcCCCceEEcCC
Q 036761 236 DSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQ--RVAFTTVGVPIPPRDKSASKVVFTTRST-EVCGWMGAHKNFEVGC 312 (897)
Q Consensus 236 ~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~~~~~~~~l~~~~~~~s~iivTtR~~-~v~~~~~~~~~~~l~~ 312 (897)
..+++-++|+|+++. ......+...+...... +.+|++|.+. .+....... .+++++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~-t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEY-AVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTT-EEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCC-eEEEEEECChHhChHHHHce-eEeCCC
Confidence 124567899999975 23344444444333334 7777776554 332222233 899999
Q ss_pred CChHHHHHHHHHHh
Q 036761 313 LSANDARELFRQNV 326 (897)
Q Consensus 313 L~~~e~~~lf~~~~ 326 (897)
++.++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00037 Score=75.63 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=98.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~---~~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GAN---FIFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCE---EEEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehhhhcc--
Confidence 4557899988888765531 245789999999999999999999987 222 33444332110
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCC-CCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIP-PRDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 284 (897)
.+...+...+...+...-...+.+|++|+++.... +..+...+. ....
T Consensus 254 ---------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 ---------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ---------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ---------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 01122222222223333345789999999964210 011111110 0112
Q ss_pred CCcEEEEecCChhHhh--hcC---CCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVCG--WMG---AHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
++..||.||...+... ... -+..+.++..+.++-.++|+.++.......+.++ ..+++.+.|.-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 2267888887765421 111 2456888888888888899887754332222333 56677777653
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.78 E-value=0.00015 Score=86.53 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---C-CCE-EEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---D-FDF-LIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~-f~~-~~wv~~~~~~~~~~~~~~i~~ 229 (897)
.++|||+++++++...+......-+.++|++|+|||++|+.+++...... . .++ .+.++.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 57899999999999999776666688999999999999999988752111 0 111 111111
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhHhh-------hc
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEVCG-------WM 302 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v~~-------~~ 302 (897)
+... .......+...+...-..++.+|++|. .......+...+. .+..++|.||...+... ..
T Consensus 245 --g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 --GTKY---RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred --cccc---cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 0000 001111122223333346778999992 2222222333332 23367777776554100 01
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhCC
Q 036761 303 GAHKNFEVGCLSANDARELFRQNVGE 328 (897)
Q Consensus 303 ~~~~~~~l~~L~~~e~~~lf~~~~~~ 328 (897)
.....+.++..+.++..+++......
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 11246899999999999999976543
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.78 E-value=6.7e-05 Score=90.66 Aligned_cols=153 Identities=16% Similarity=0.231 Sum_probs=85.2
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC---C--CCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG---D--FDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~--f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+++|||+++++++.+.+.....+-+.|+|++|+||||+|+.+++...... . -..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 67899999999999999776666788999999999999999988752111 1 12344443322100
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhc--cCceEEEEecccccc-------ccc---cccccCCCCCCCCcEEEEecCChh
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLK--EKKFVLLLDDVWQRV-------AFT---TVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~~~---~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+.. ...........+...+. +++.+|++|++.... .++ .+...+. .++..+|.+|....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 01122222333333332 367899999996532 011 1111121 12255666665443
Q ss_pred H------hhhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 298 V------CGWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 298 v------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
. .........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 1111223458999999999999997543
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.77 E-value=0.00022 Score=79.43 Aligned_cols=177 Identities=16% Similarity=0.186 Sum_probs=101.9
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.+++|.+..+++|.+.+.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~---~fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GA---FFFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SS---EEEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CC---CEEEEEch------
Confidence 4579999999998877642 344678999999999999999998876 22 23344421
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc-------------ccccccccCCC-CCCCCc
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-------------AFTTVGVPIPP-RDKSAS 287 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~~s 287 (897)
.+...+ ...........+.....+++.+|+||+++... ....+...+.. ....+.
T Consensus 273 ----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 ----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111111 11122233344444555678899999994211 01111111110 112226
Q ss_pred EEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc-chHHHH
Q 036761 288 KVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL-PLALII 357 (897)
Q Consensus 288 ~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plai~~ 357 (897)
.||.||..... .........+.+...+.++-.+++..++..........+ .++++.+.|. +-.+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCCcHHHHHH
Confidence 77777776532 111123346899999999999999988754432223333 4566666664 433433
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00062 Score=73.62 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~--~~~---fi~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT--DAT---FIRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH--TCE---EEEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc--CCC---eEEEEhHHhh---
Confidence 4567899988888765421 356788999999999999999999987 222 3344433210
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCC-CCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIP-PRDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 284 (897)
. .+...+...+...+...-...+.+|++|+++.... ...+...+. ....
T Consensus 281 -----------s---k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 281 -----------Q---KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -----------C---CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -----------c---ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 0 01122222222333333346789999999964210 001111110 1112
Q ss_pred CCcEEEEecCChhHh-----hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVC-----GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
++..||.||...+.. ..-.-+..+.++..+.++-.++|+.++.......+-++ ..|++.+.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 225677788765431 11134567889998999999999888755432333333 56677787753
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.76 E-value=0.00083 Score=68.51 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=94.3
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.+..++++.+.+. . ...+-+.|+|++|+||||||+.+++.. ... .+.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP---FFTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC---EEEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC---EEEEeHHHHHH---
Confidence 567999988877765432 1 123458899999999999999999876 222 23333222110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCC--CCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIP--PRDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~~ 284 (897)
.. ...........+.......+.++++|+++.... ...+...+. ....
T Consensus 84 -------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 -------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp -------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred -------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 111222223333333345678999999843110 011110010 1122
Q ss_pred CCcEEEEecCChhHh-hh-c---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCC-cchHHH
Q 036761 285 SASKVVFTTRSTEVC-GW-M---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGS-LPLALI 356 (897)
Q Consensus 285 ~~s~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlai~ 356 (897)
+ ..||.||...+.. .. . .....+.++..+.++-.++++..+.......... ...+++.+.| .+--+.
T Consensus 150 ~-~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 G-IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp C-EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred C-EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 2 5677777765421 11 1 1234678888888888888887764432222221 3456667777 554443
No 213
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.76 E-value=0.00029 Score=76.64 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=51.8
Q ss_pred cccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeCCCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccC
Q 036761 724 ALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYGCHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFA 801 (897)
Q Consensus 724 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~ 801 (897)
.+.++..|+.+.+..+ ++.+.. ..+..+.+|+.+.+... ++.++ .+..+++|+.+.+.++ .++.+..
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~~----- 303 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNS-AIETLEP----- 303 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCT-TCCEECT-----
T ss_pred cccCCccceEEEcCCC--ccEeCc-cccceeehhcccccccc--ceecccccccccccccccccccc-ccceehh-----
Confidence 4455566666666432 443322 22455666777766542 33333 3445677777777542 2333322
Q ss_pred CccccccCCCcccccceeecccccccccccC-CCCCCCCcceeee
Q 036761 802 DVPEVMANLKPFAQLYSLRLGGLTVLKSIYK-RPLPFPCLRDLTV 845 (897)
Q Consensus 802 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~i 845 (897)
..+.++++|+.+.|.. +++.+.. .+..|++|+.+.+
T Consensus 304 ------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 304 ------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 1455666777776642 3444443 2233455555544
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=2.1e-05 Score=75.79 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=77.1
Q ss_pred ccCCccceeeehhccccccccc----hhhhcCCCcccEEEccCCCCCcc-----cCccccCccCCCEeeccCCCccc---
Q 036761 538 VPTCLHLLTLFLIFNEELEMIT----SDFFKSMPRLKVLNLSGARRMSS-----FPLGISVLVSLQHLDLSGTAIRE--- 605 (897)
Q Consensus 538 ~~~~~~L~~L~l~~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~i~~--- 605 (897)
+..+++|++|+|+++..+..-. ...+...++|++|+|++| .++. +...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3567788888888432554321 223667788999999998 5553 34455566789999999998873
Q ss_pred --cChhhhcCCcCcEecC--CCCccccc----cChhhhhcCCccceeeccccC
Q 036761 606 --LPKELNALENLQCLNL--EETHFLIT----IPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 606 --lp~~i~~L~~L~~L~L--~~~~~l~~----lp~~~~~~l~~L~~L~l~~~~ 650 (897)
+...+...++|++|+| ++|.+... +.. .+...++|++|++++|.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence 5667778888999999 77875322 222 25667889999998765
No 215
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.72 E-value=0.0012 Score=70.25 Aligned_cols=170 Identities=19% Similarity=0.164 Sum_probs=91.8
Q ss_pred CCCccchHHHHHHHHHhcc-----CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-----EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+.++|.+..++.+...+.. .....+.|+|++|+||||||+.+++... ..|. .....-.....+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~~---~~sg~~~~~~~~------- 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ--TNIH---VTSGPVLVKQGD------- 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT--CCEE---EEETTTCCSHHH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC--CCEE---EEechHhcCHHH-------
Confidence 5678998888877666543 2446799999999999999999998762 2111 111110001111
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--ccccccccCCC---------CC---------CCCcEE
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--AFTTVGVPIPP---------RD---------KSASKV 289 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~~~~~~~~l~~---------~~---------~~~s~i 289 (897)
+. .+...+ .++-++++|++.... ..+.+...+.. +. .. ..+
T Consensus 93 ----------------l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~-~~l 153 (334)
T 1in4_A 93 ----------------MA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP-FTL 153 (334)
T ss_dssp ----------------HH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC-CEE
T ss_pred ----------------HH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC-eEE
Confidence 11 111112 234466778775321 11111100000 00 01 223
Q ss_pred E-EecCChhHhhhc--CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHHH
Q 036761 290 V-FTTRSTEVCGWM--GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALIIT 358 (897)
Q Consensus 290 i-vTtR~~~v~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~~ 358 (897)
+ .|++...+.... .....+.+++.+.++..+++.+.+..... ..-.+.+..|++.+.|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 3 344433321111 12235789999999999999887642221 122456889999999999765443
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.72 E-value=0.00025 Score=84.75 Aligned_cols=153 Identities=14% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEE-EeCCcCCHHHHHHHHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWV-VVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv-~~~~~~~~~~~~~~i~~ 229 (897)
.+++||+.+++++.+.|......-+.|+|++|+||||+|+.+++...... ..++.+|. ..+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 57899999999999999876667788999999999999999988652111 12333321 11110
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhc-cCceEEEEecccccc--------c---cccccccCCCCCCCCcEEEEecCChh
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLK-EKKFVLLLDDVWQRV--------A---FTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~~--------~---~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
+... . .....+.....+.+.+. .++.+|++|++.... . ...+...+. .+...+|.+|...+
T Consensus 254 -~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQE 326 (758)
T ss_dssp --CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHH
T ss_pred -hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchH
Confidence 0000 0 11223333333333343 457899999996431 1 111222222 23367777776554
Q ss_pred Hhhhc-------CCCceEEcCCCChHHHHHHHHHHh
Q 036761 298 VCGWM-------GAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 298 v~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
..... .....+.++..+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 112358899999999998887654
No 217
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00063 Score=72.78 Aligned_cols=171 Identities=15% Similarity=0.168 Sum_probs=97.0
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.++.+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~---fi~v~~s~l---- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SAT---FLRIVGSEL---- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCE---EEEEESGGG----
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCC---EEEEEHHHh----
Confidence 4457899988888765531 245789999999999999999999987 222 233333221
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc----------------cccccccCC-CCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA----------------FTTVGVPIP-PRDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~----------------~~~~~~~l~-~~~~ 284 (897)
.. .+...+...+...+...-...+.+|++|+++.... ...+...+. ....
T Consensus 253 ----------~s---k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 253 ----------IQ---KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp ----------CC---SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred ----------hh---ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 01112222222222223345689999999863210 001111110 0112
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
++..||.||...+... .. .-+..+.++.-+.++-.++|+.++.......+.++ ..|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 2257777887765421 11 12345788888888889999888755432333333 5566777665
No 218
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.00072 Score=73.51 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=143.3
Q ss_pred ccccCCccceeeehhccccccccchhhhcCCCcccEEEccCCCCCcccCc-cccCccCCCEeeccCCCccccChhhhcCC
Q 036761 536 SAVPTCLHLLTLFLIFNEELEMITSDFFKSMPRLKVLNLSGARRMSSFPL-GISVLVSLQHLDLSGTAIRELPKELNALE 614 (897)
Q Consensus 536 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~Ls~~~~~~~lp~-~i~~L~~L~~L~L~~~~i~~lp~~i~~L~ 614 (897)
|.+....+|+.+.+. ..++.++...|.++.+|+.++|..+ ++.++. .|.++ +|+.+.+.. +++.++...-...
T Consensus 40 ~~~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC
T ss_pred cccccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccC
Confidence 445556677777765 3477777777888888888887654 455443 34554 566666543 3555554433334
Q ss_pred cCcEecCCCCccccccChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcccHH
Q 036761 615 NLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQDLQ 694 (897)
Q Consensus 615 ~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 694 (897)
+|+.+.+..+ +..+....+.+. +|..+.+...- .. .....+..+.+++.+.+..+......
T Consensus 114 ~L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~v-~~---------------i~~~~f~~~~~l~~~~~~~~~~~~~~ 174 (379)
T 4h09_A 114 DLDDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKSV-TT---------------IKDGIGYKAENLEKIEVSSNNKNYVA 174 (379)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEEECTTC-CE---------------ECSCTTTTCTTCCEEEECTTCSSEEE
T ss_pred CcccccCCCc--cccccccccccc-eeeeeecccee-ec---------------cccchhcccccccccccccccceeec
Confidence 6777777654 344444434443 44444433211 00 01112334455555554432211000
Q ss_pred HHH----------hchhccccceeEEEeccCCCcccccccccccCCCCceeeeecCCccEEEecccCcCCCCccEEEEeC
Q 036761 695 CVL----------KSKELRRCTQALYLYSFKRSEPLDVSALAGLKHLNRLWIHECEELEELEMARQPFDFRSLKKIQIYG 764 (897)
Q Consensus 695 ~~~----------~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~L~~ 764 (897)
... ........+..+.+.. .........+..+.+|+.+.+.. .+..+. ...+..+.+|+.+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~f~~~~~l~~i~~~~--~~~~i~-~~~f~~~~~L~~i~lp~ 249 (379)
T 4h09_A 175 ENYVLYNKNKTILESYPAAKTGTEFTIPS--TVKTVTAYGFSYGKNLKKITITS--GVTTLG-DGAFYGMKALDEIAIPK 249 (379)
T ss_dssp ETTEEEETTSSEEEECCTTCCCSEEECCT--TCCEECTTTTTTCSSCSEEECCT--TCCEEC-TTTTTTCSSCCEEEECT
T ss_pred ccceecccccceecccccccccccccccc--ceeEEeecccccccccceeeecc--ceeEEc-cccccCCccceEEEcCC
Confidence 000 0000001111111111 11112222344566777777643 244432 23356778899999876
Q ss_pred CCCCCCCc--ccccCCCccEEEEecCchhhhhhcccccCCccccccCCCcccccceeecccccccccccC-CCCCCCCcc
Q 036761 765 CHRLKDLT--FLLFAPNLKSIEVSSCFAMEEIISEAKFADVPEVMANLKPFAQLYSLRLGGLTVLKSIYK-RPLPFPCLR 841 (897)
Q Consensus 765 c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~ 841 (897)
+ ++.+. .+..+.+|+.+.+.. .++.+.. ..+..+++|+.+.+.+ ..++.+.. .+..+++|+
T Consensus 250 ~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~-----------~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 250 N--VTSIGSFLLQNCTALKTLNFYA--KVKTVPY-----------LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp T--CCEECTTTTTTCTTCCEEEECC--CCSEECT-----------TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCC
T ss_pred C--ccEeCccccceeehhccccccc--cceeccc-----------cccccccccccccccc-cccceehhhhhcCCCCCC
Confidence 4 44443 355688899998865 2444322 2567788999998865 34555554 344567788
Q ss_pred eeeec------------CCccCCCCC
Q 036761 842 DLTVN------------SCDELRKLP 855 (897)
Q Consensus 842 ~L~i~------------~C~~L~~lp 855 (897)
.+.+. +|.+|+++-
T Consensus 314 ~i~lp~~l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 314 SVTLPTALKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCCCC
T ss_pred EEEcCccccEEHHHHhhCCCCCCEEE
Confidence 77763 567776653
No 219
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.68 E-value=5.9e-05 Score=77.75 Aligned_cols=152 Identities=14% Similarity=0.061 Sum_probs=82.3
Q ss_pred CCCccchHHHHHHHHHhcc------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++... ..|- .+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~--- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIE--- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHH---
Confidence 6789998888777765531 1233478999999999999999998763 2221 111111100
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc-----------------ccccccccCCCC--C
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV-----------------AFTTVGVPIPPR--D 283 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~~~~~~~~l~~~--~ 283 (897)
...... ..... ..+......++.+|++|+++... ....+...+... .
T Consensus 83 -------~~~~~~----~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 83 -------MFVGLG----ASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp -------SCSSSC----SSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred -------hhcchH----HHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 000000 00001 11122223466899999996421 112222222111 1
Q ss_pred CCCcEEEEecCChhHh--hhc---CCCceEEcCCCChHHHHHHHHHHhCC
Q 036761 284 KSASKVVFTTRSTEVC--GWM---GAHKNFEVGCLSANDARELFRQNVGE 328 (897)
Q Consensus 284 ~~~s~iivTtR~~~v~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 328 (897)
.....||.||...... ... .....+.++..+.++-.+++...+..
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 1114677777765421 111 22346788899999999999887643
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00036 Score=75.72 Aligned_cols=171 Identities=11% Similarity=0.121 Sum_probs=96.6
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. .. ..+.+..+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~--~~---~f~~v~~s~l---- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT--NA---TFLKLAAPQL---- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TC---EEEEEEGGGG----
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh--CC---CEEEEehhhh----
Confidence 4567999999888765431 245788999999999999999999987 22 2333443321
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccc-------cc---------cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQR-------VA---------FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------~~---------~~~~~~~l~~-~~~ 284 (897)
.. .+...+...+...+...-...+.+|++|+++.. .. ...+...+.. ...
T Consensus 252 ----------~~---~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 252 ----------VQ---MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ----------CS---SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ----------hh---cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 00 011122222222222233457899999998531 00 0111111111 112
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
++..||.||...+... .. .-+..+.++..+.++-.++|+.++.......+-+ ...|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 2256777887765421 11 2245688888888888888887764332222223 35667777764
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0008 Score=72.92 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=92.9
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ..+ .+.+..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~--~~~---~~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST--KAA---FIRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--TCE---EEEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---eEEEecchhhc--
Confidence 4567999999888775531 245678999999999999999999987 222 33444332110
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--------c--------cccccccCC--CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--------A--------FTTVGVPIP--PRD 283 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~--------~~~~~~~l~--~~~ 283 (897)
.+...+...+...+...-...+.++++|+++... . ...+...+. ...
T Consensus 245 ---------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 ---------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp ---------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred ---------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0112222223333333334578999999985310 0 111111110 112
Q ss_pred CCCcEEEEecCChhH-----hhhcCCCceEEcCCCCh-HHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 284 KSASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSA-NDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 284 ~~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.+ ..||.||...+. .....-+..+.+..++. ++-..+|+.++.......+.++ ..+++.+.|.
T Consensus 310 ~~-v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TN-VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp CS-EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CC-EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 23 567778876543 11112234577866654 5555677666643322223333 5566777664
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.59 E-value=2.6e-05 Score=74.87 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred chHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 160 MQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 160 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.+..++.+.+++.+ .....+.|+|++|+||||||+.+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445555555543 3457899999999999999999988763
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.59 E-value=0.00035 Score=73.65 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCCccchHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE--------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|++..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999988876643 234568899999999999999999876
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=7.7e-05 Score=75.62 Aligned_cols=79 Identities=27% Similarity=0.352 Sum_probs=58.6
Q ss_pred CCccceeeehhccccccccch--hhhcCCCcccEEEccCCCCCcccCccccCcc--CCCEeeccCCCccc-cC-------
Q 036761 540 TCLHLLTLFLIFNEELEMITS--DFFKSMPRLKVLNLSGARRMSSFPLGISVLV--SLQHLDLSGTAIRE-LP------- 607 (897)
Q Consensus 540 ~~~~L~~L~l~~~~~l~~l~~--~~~~~l~~L~~L~Ls~~~~~~~lp~~i~~L~--~L~~L~L~~~~i~~-lp------- 607 (897)
++++|++|+|+ +|.+..++. ..+..+++|++|+|++| .++.+. .+..+. +|++|+|++|.+.. +|
T Consensus 168 ~l~~L~~L~Ls-~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLS-NNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECT-TSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECC-CCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46677888888 666666542 44678999999999999 677653 455555 99999999998873 44
Q ss_pred hhhhcCCcCcEecC
Q 036761 608 KELNALENLQCLNL 621 (897)
Q Consensus 608 ~~i~~L~~L~~L~L 621 (897)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23778999999973
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.52 E-value=3.3e-05 Score=70.87 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=34.3
Q ss_pred CCCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++|++..++++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999999888887653 333457799999999999999998765
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.52 E-value=0.00066 Score=74.96 Aligned_cols=171 Identities=11% Similarity=0.110 Sum_probs=97.5
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.++.++++.+.+. . ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~---f~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVP---FFHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCC---eeeCCHHHHHHH--
Confidence 467899988777765432 1 123458899999999999999999876 222 233443321110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----------------ccccccccCC--CCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----------------AFTTVGVPIP--PRDK 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~--~~~~ 284 (897)
+ ...........+.....+.+.+|+||+++... ....+...+. ....
T Consensus 89 --------~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 --------F-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp --------C-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred --------H-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 01112223333444445678999999995421 0111111110 1112
Q ss_pred CCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
+ ..||.||...+... .. .-...+.++..+.++-.++++.++.......... ...+++.+.|..
T Consensus 154 ~-viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 G-IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp T-EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred C-EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3 67788887765421 11 1234688898888888888887775433222222 344777888876
No 227
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.00044 Score=72.87 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=43.6
Q ss_pred CCCccchHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|.+..++.+...+... ....+.|+|++|+||||+|+.+++.... .-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeeccc
Confidence 45789999998888777542 1358999999999999999999987632 112345555554
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.36 E-value=0.0004 Score=71.23 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=40.1
Q ss_pred CCCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
+.++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++... ..-...+.++++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~--~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAA 67 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST--TTTSCEEEEEGGG
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC--ccCCCeEEEecCC
Confidence 4579999998888766543 2335678999999999999999998763 1112345566554
No 229
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.36 E-value=0.00026 Score=69.23 Aligned_cols=58 Identities=22% Similarity=0.077 Sum_probs=38.7
Q ss_pred CCCccch----HHHHHHHHHhccC----CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe
Q 036761 155 EPTVGMQ----SQLDKVWSCLVEE----PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV 214 (897)
Q Consensus 155 ~~~vGr~----~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 214 (897)
++|++.+ ..++.+.+++... ....+.|+|++|+||||||+.+++... .....++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~ 90 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV 90 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh
Confidence 4566544 3444555555432 127889999999999999999998874 22344566654
No 230
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.33 E-value=6.2e-05 Score=69.37 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
....++|+|+.|+|||||++.++...... . ..++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHH
Confidence 45689999999999999999999876432 1 1255665443
No 231
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.26 E-value=0.00048 Score=71.99 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCccchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3579999999998887654 344567899999999999999999865
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.26 E-value=0.0019 Score=75.53 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=98.5
Q ss_pred CCccchHHHHHHHHHhc----c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 156 PTVGMQSQLDKVWSCLV----E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.++.+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~---~~~v~~~~------ 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE------ 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCE---EEEEEHHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCe---EEEEEhHH------
Confidence 45688888777766542 1 245679999999999999999999876 222 33443221
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEeccccccc-------------ccccc---ccCCCCCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRVA-------------FTTVG---VPIPPRDKSA 286 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~-------------~~~~~---~~l~~~~~~~ 286 (897)
+. +. +...+...+...+.......+.+|+||+++.... ...+. ..+.. .++
T Consensus 274 ----l~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~~ 340 (806)
T 3cf2_A 274 ----IM---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAH 340 (806)
T ss_dssp ----HH---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GGC
T ss_pred ----hh---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cCC
Confidence 11 10 1122333333444444556789999999964210 00111 11111 122
Q ss_pred cEEEEecCChhHh-hhc----CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 287 SKVVFTTRSTEVC-GWM----GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 287 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
..||.||...+.. ..+ .-...++++..+.++-.++++.+........+.+ ...|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 5667777665431 111 2345789999999999999988875543333333 356777787764
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.15 E-value=0.0014 Score=72.80 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=36.1
Q ss_pred CCCccchHHHHHHHHHh---ccC--CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCL---VEE--PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.++|.++.++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 67899999887655443 333 23578899999999999999999876
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.00029 Score=84.04 Aligned_cols=60 Identities=27% Similarity=0.410 Sum_probs=43.6
Q ss_pred CCCccchHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechh
Confidence 4679999999888877653 1223799999999999999999998762 2223455566554
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.06 E-value=0.0057 Score=67.94 Aligned_cols=168 Identities=13% Similarity=0.138 Sum_probs=92.1
Q ss_pred CCCccchHHHHHHHHHhc---cC---------CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---EE---------PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
.+++|.++.++++.+... .. -.+-|.|+|++|+||||||+.++.... ...+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH---
Confidence 678999988777765432 21 123489999999999999999998762 2234444332110
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHhc----cCceEEEEecccccc------------c----cccccccCCCC
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLK----EKKFVLLLDDVWQRV------------A----FTTVGVPIPPR 282 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~----~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~ 282 (897)
.........++..++ ..+.++++|+++... . ...+...+...
T Consensus 103 ------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 000011122333332 235799999995321 0 11111111111
Q ss_pred C-CCCcEEEEecCChhHhh--hc---CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 283 D-KSASKVVFTTRSTEVCG--WM---GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 283 ~-~~~s~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
. .....|+.||..+++.. .. .-...+.++..+.++-.++++.++.......+.. ...|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1 12256667777765522 11 2235788999999988899887764322121222 345677777765
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.04 E-value=0.011 Score=60.53 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=82.7
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++.|.++.+++|.+.+.. .-.+-+.|+|++|+||||||+.++..... ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 5677888888877664421 11223999999999999999999987621 3444443321100
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEeccccccc---------c----ccccccCCCC-CCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRVA---------F----TTVGVPIPPR-DKSA 286 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~~---------~----~~~~~~l~~~-~~~~ 286 (897)
.... .......+.+.. ...+.++++|+++.... . ..+...+..+ ....
T Consensus 84 ----------------~~~~-~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 ----------------YVGE-SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ----------------TTHH-HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred ----------------hhhH-HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0000 111122222222 34678999999964210 0 0010111111 1112
Q ss_pred cEEEEecCChhHhhh-----cCCCceEEcCCCChHHHHHHHHHHhC
Q 036761 287 SKVVFTTRSTEVCGW-----MGAHKNFEVGCLSANDARELFRQNVG 327 (897)
Q Consensus 287 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~lf~~~~~ 327 (897)
.-++.+|..+++... ..-...+.++..+.++-.++++....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 456677777665211 13356788999999999999988764
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.03 E-value=0.0048 Score=63.61 Aligned_cols=171 Identities=15% Similarity=0.144 Sum_probs=89.1
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.++.++++.+... . .-.+-+.|+|+.|+||||||+.++.... ...+.+... .
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------~ 108 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------D 108 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------H
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------H
Confidence 567898887766654432 1 1112389999999999999999998762 223333321 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc------------c----cccccccCCCCCC-
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV------------A----FTTVGVPIPPRDK- 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~- 284 (897)
+.... .... ......+.+.. ...+.++++|++.... . ...+...+..+..
T Consensus 109 ----~~~~~-------~~~~-~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 109 ----FVEMF-------VGVG-AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp ----HHHST-------TTHH-HHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred ----HHHHH-------hhHH-HHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11100 0001 11122222222 2456899999994210 0 1111111221111
Q ss_pred CCcEEEEecCChhHh-----hhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVC-----GWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
....++.||..+++. ........+.++..+.++-.+++...+.......... ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 113455566665442 1112345788999999988888887764332222222 334666676654
No 238
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.99 E-value=0.0072 Score=61.29 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCccchHHHHHHHHHhc---c---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH
Q 036761 155 EPTVGMQSQLDKVWSCLV---E---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK 222 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~ 222 (897)
++++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++.... ...+.+... .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~------~ 84 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------D 84 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH------H
Confidence 457898877666654332 1 1122389999999999999999998762 122333211 1
Q ss_pred HHHHHHHHhCCCCchhccccHHHHHHHHHHHh-ccCceEEEEecccccc------------c----cccccccCCCCCC-
Q 036761 223 IQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL-KEKKFVLLLDDVWQRV------------A----FTTVGVPIPPRDK- 284 (897)
Q Consensus 223 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~------------~----~~~~~~~l~~~~~- 284 (897)
+.... .... ......+.+.. ...+.++++|+++... . ...+...+..+..
T Consensus 85 ----~~~~~-------~~~~-~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 85 ----FVEMF-------VGVG-AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp ----HHHSC-------TTHH-HHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred ----HHHHH-------hhHH-HHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 11100 0001 11122222322 2456899999994211 0 1111111111111
Q ss_pred CCcEEEEecCChhHhh-----hcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 285 SASKVVFTTRSTEVCG-----WMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 285 ~~s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
....++.||..+++.. ...-...+.++..+.++-.++++..+.......+.. ...+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 1134556666665421 112345688999999888888887764332122222 235666666643
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.92 E-value=0.0059 Score=63.35 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.89 E-value=0.0044 Score=70.26 Aligned_cols=154 Identities=15% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCccchHHHHHHHHHhc------cCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 156 PTVGMQSQLDKVWSCLV------EEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
+.+|.++..+.+.+.+. .....++.|+|++|+||||||+.++... ... ...+.++...+...+......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~---~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRK---FVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCE---EEEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCC---eEEEEecccchhhhhhhHHHH
Confidence 46888877777655432 1245689999999999999999999876 222 222333332222221111111
Q ss_pred HhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc------ccccccccCCCCC--------------CCCcEE
Q 036761 230 KVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV------AFTTVGVPIPPRD--------------KSASKV 289 (897)
Q Consensus 230 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~~~~~~~~l~~~~--------------~~~s~i 289 (897)
..+ .........+. ......-+++||+++... ....+...+.... ..+..|
T Consensus 157 ~ig--------~~~~~~~~~~~-~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 157 YVG--------AMPGRIIQGMK-KAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHH-TTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred Hhc--------cCchHHHHHHH-HhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111 01111111122 222233488899997421 1122222221100 022567
Q ss_pred EEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHh
Q 036761 290 VFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNV 326 (897)
Q Consensus 290 ivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 326 (897)
|.||..... ..++ ..+.+.+++.++-..++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 777766432 2333 468899999998888887654
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.77 E-value=0.0007 Score=69.61 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=46.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEe--CCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVV--SKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 252 (897)
..+++.|+|++|+||||||.+++... ...++|++. .... .. ...+.++....+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v-------------~~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPL-------------SG-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSS-------------TT-----CBCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhh-------------hh-----hhcCHHHHHHHHHH
Confidence 34678899999999999999998751 112345555 2221 11 01345566666777
Q ss_pred HhccCceEEEEecccc
Q 036761 253 VLKEKKFVLLLDDVWQ 268 (897)
Q Consensus 253 ~l~~~~~LlVlDdv~~ 268 (897)
.+...+ +||+|++..
T Consensus 179 ~l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHHCS-EEEEECCTT
T ss_pred HHhhCC-EEEEecccc
Confidence 777667 999999843
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.73 E-value=0.0071 Score=72.03 Aligned_cols=170 Identities=15% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
++++|.+..+++|.+++.. .....|.|+|++|+||||||+.++... ... .+.++.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l--~~~---~i~v~~~~----- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT--TCE---EEEEEHHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCc---EEEEEchH-----
Confidence 4568999888888776642 234679999999999999999999875 222 23333211
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc----------------ccccccccCCCCCCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV----------------AFTTVGVPIPPRDKS 285 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~~~~~~~~l~~~~~~ 285 (897)
+. +. . .......+...+.......+.++++|++.... .+..+...+.. ..
T Consensus 274 -----l~---~~-~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~--~~ 339 (806)
T 1ypw_A 274 -----IM---SK-L---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RA 339 (806)
T ss_dssp -----HS---SS-S---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT--TS
T ss_pred -----hh---hh-h---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc--cc
Confidence 10 00 0 11112223333444445678899999995311 01111111111 12
Q ss_pred CcEEEEecCChhHh-hhc----CCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcc
Q 036761 286 ASKVVFTTRSTEVC-GWM----GAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSLP 352 (897)
Q Consensus 286 ~s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glP 352 (897)
+..+|.||...... ... .....+.+...+.++-.+++...+..........+ .++++.+.|.-
T Consensus 340 ~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred cEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 25666677664321 111 12345788888999999999887654332222223 34455555543
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.61 E-value=0.0048 Score=60.99 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=52.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch----------hccccHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS----------WMKKNLA 244 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~ 244 (897)
...++.|+|.+|+||||||..++. . .-..++|++.....+...+.. +.+..+..... .......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456999999999999999999987 2 125688888776556555443 33333321100 0011112
Q ss_pred HHHHHHHHHhccCceEEEEeccc
Q 036761 245 ERAVDIYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 245 ~~~~~l~~~l~~~~~LlVlDdv~ 267 (897)
+....++..+..+.-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 33444444554456789999874
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.61 E-value=0.0048 Score=65.17 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=58.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-.++.|+|++|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4579999999999999999999877532 22357888877766654 45566654322 12334555555555
Q ss_pred HHhc-cCceEEEEecccc
Q 036761 252 NVLK-EKKFVLLLDDVWQ 268 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~~ 268 (897)
..++ .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4556899999843
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.58 E-value=0.0021 Score=61.02 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=61.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc---CCHHHHHHHHHHHhCCCC----ch--hcc------
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD---LQIEKIQEIIGKKVGLFN----DS--WMK------ 240 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~----~~--~~~------ 240 (897)
...|.|++..|.||||.|-..+-+.. ++--.+.++..-+. .....++ +.++... .. +..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHHH
Confidence 35667777777999999988877763 33345555654332 2333333 3332100 00 001
Q ss_pred -ccHHHHHHHHHHHhccCc-eEEEEecccc-----ccccccccccCCCCCCCCcEEEEecCChh
Q 036761 241 -KNLAERAVDIYNVLKEKK-FVLLLDDVWQ-----RVAFTTVGVPIPPRDKSASKVVFTTRSTE 297 (897)
Q Consensus 241 -~~~~~~~~~l~~~l~~~~-~LlVlDdv~~-----~~~~~~~~~~l~~~~~~~s~iivTtR~~~ 297 (897)
..........++.+.+.+ =|||||++-. ..+.+.+...+...... ..||+|+|...
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ap 164 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCCCc
Confidence 111222334455555544 4999999843 22223333333333444 78999999963
No 246
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0035 Score=74.82 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=42.4
Q ss_pred CCCccchHHHHHHHHHhcc---------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 155 EPTVGMQSQLDKVWSCLVE---------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++.. . ...+.++++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechh
Confidence 4678999999888776642 123479999999999999999999876 2 3345555544
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0089 Score=60.06 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=55.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------hccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------WMKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (897)
.-.++.|+|++|+|||||+..++....... .-..++|+.....+....+. .+++.++..... ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 457999999999999999999987532111 23678898877755554443 344555543210 011122
Q ss_pred HH---HHHHHHHHhc-cCceEEEEeccc
Q 036761 244 AE---RAVDIYNVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 244 ~~---~~~~l~~~l~-~~~~LlVlDdv~ 267 (897)
.+ ....+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 22 2333444454 356788899874
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.50 E-value=0.0092 Score=61.06 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=57.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHH-HHHHHH
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAER-AVDIYN 252 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~~ 252 (897)
.++-|.|++|+||||||.+++........-..++|++....++.. .+++++...+.. ...+.++. ...+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999999887665322123578999988877753 367777654321 23344554 333322
Q ss_pred H--h-ccCceEEEEecccc
Q 036761 253 V--L-KEKKFVLLLDDVWQ 268 (897)
Q Consensus 253 ~--l-~~~~~LlVlDdv~~ 268 (897)
. + +++.-++|+|-+..
T Consensus 104 l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHTCCTTCCEEEEEECSTT
T ss_pred HHHhhccCceEEEEecccc
Confidence 2 2 35678999999843
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.32 E-value=0.0088 Score=63.41 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=56.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
.-.++.|+|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999998866532 22468899988766643 35556544321 11234455555555
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 346699999984
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.30 E-value=0.014 Score=61.36 Aligned_cols=92 Identities=18% Similarity=0.207 Sum_probs=57.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------hccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------WMKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (897)
...++.|+|.+|+||||||.+++....... .-..++|++....++...+.. +++.++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 456999999999999999999987642211 135789999888777766653 45566553211 011122
Q ss_pred H---HHHHHHHHHhc--cCceEEEEeccc
Q 036761 244 A---ERAVDIYNVLK--EKKFVLLLDDVW 267 (897)
Q Consensus 244 ~---~~~~~l~~~l~--~~~~LlVlDdv~ 267 (897)
+ ++...+...++ .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 23444555554 345688888873
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.27 E-value=0.0099 Score=63.28 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=57.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++...+. ....+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 45689999999999999999988765322 2468999988776654 24555553321 12234566666666
Q ss_pred HHhcc-CceEEEEeccc
Q 036761 252 NVLKE-KKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~~-~~~LlVlDdv~ 267 (897)
...+. ..-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 55543 45589999984
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.23 E-value=0.0092 Score=63.32 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=55.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
...++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++...+.. ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45799999999999999999988765322 2468899988776643 245555433211 1223445544444
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
...+ .+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4443 445689999983
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.02 Score=60.76 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=56.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCC----CCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch----------hcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQG----DFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS----------WMK 240 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~ 240 (897)
...++.|+|.+|+||||||.+++....... .-..++|++....++...+.. ++..++..... ...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 557999999999999999999887642211 235789999888777766543 44555543210 001
Q ss_pred ccHHHHHHHHHHHhc---cCceEEEEeccc
Q 036761 241 KNLAERAVDIYNVLK---EKKFVLLLDDVW 267 (897)
Q Consensus 241 ~~~~~~~~~l~~~l~---~~~~LlVlDdv~ 267 (897)
....++...+...++ .+.-+||+|.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 111233334444444 345588888873
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.11 E-value=0.0061 Score=73.52 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=36.6
Q ss_pred CCccchHHHHHHHHHhccC---------CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 156 PTVGMQSQLDKVWSCLVEE---------PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|.+..++.+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999888887766431 23589999999999999999998876
No 255
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.09 E-value=0.0022 Score=62.99 Aligned_cols=113 Identities=14% Similarity=-0.057 Sum_probs=63.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVL 254 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 254 (897)
...++.|+|..|+||||++..++.+...+ -..++.+....+. . -...++..++...+........++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 45789999999999999999888877432 2234444433321 1 12234555554332222233444555555544
Q ss_pred ccCc-eEEEEeccccc--cccccccccCCCCCCCCcEEEEecCCh
Q 036761 255 KEKK-FVLLLDDVWQR--VAFTTVGVPIPPRDKSASKVVFTTRST 296 (897)
Q Consensus 255 ~~~~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~~s~iivTtR~~ 296 (897)
.+.+ -+||+|.+... +..+.+.. +.+ .+ ..||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~g-i~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NG-FVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TT-CEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CC-CeEEEEeccc
Confidence 4444 49999999642 22222211 111 23 7899998864
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.79 E-value=0.041 Score=58.45 Aligned_cols=163 Identities=9% Similarity=-0.094 Sum_probs=96.4
Q ss_pred HHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchhccccHHHHH
Q 036761 168 WSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSWMKKNLAERA 247 (897)
Q Consensus 168 ~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 247 (897)
.+.+...-.++..++|+.|.||++.|+.+.+... ...|+....+.+....++.++...+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------ 70 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNAIFSLCQA------------------ 70 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHHHHHHHHH------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHHHHHHhcC------------------
Confidence 3334334567999999999999999999887653 123432222223333333333222110
Q ss_pred HHHHHHhccCceEEEEecccc---ccccccccccCCCCCCCCcEEEEecCC-------hhHhhh-cCCCceEEcCCCChH
Q 036761 248 VDIYNVLKEKKFVLLLDDVWQ---RVAFTTVGVPIPPRDKSASKVVFTTRS-------TEVCGW-MGAHKNFEVGCLSAN 316 (897)
Q Consensus 248 ~~l~~~l~~~~~LlVlDdv~~---~~~~~~~~~~l~~~~~~~s~iivTtR~-------~~v~~~-~~~~~~~~l~~L~~~ 316 (897)
.-+-+++-++|+|++.. ...++.+...+.....+ +.+|++|.. ..+... ......++..+++.+
T Consensus 71 ----~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~-~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 71 ----MSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp ----HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTT-EEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred ----cCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCC-eEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 11235567888899854 24455554444433334 677766543 223322 234467899999999
Q ss_pred HHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCcchHHHH
Q 036761 317 DARELFRQNVGEETLNGHPDIRELSETVTKECGSLPLALII 357 (897)
Q Consensus 317 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~glPlai~~ 357 (897)
+....+.+.+......-+ .+.+..+++.++|.+.++..
T Consensus 146 ~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 999888887643221111 35678899999998877654
No 257
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.78 E-value=0.023 Score=59.76 Aligned_cols=92 Identities=14% Similarity=0.201 Sum_probs=56.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC----------CCC----CEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ----------GDF----DFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS--- 237 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--- 237 (897)
...++.|+|.+|+||||||.+++...... ..- ..++|++....++...+.. +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999999988653111 111 5789999888877776654 34556553210
Q ss_pred ----hccccHH---HHHHHHHHHhcc--CceEEEEeccc
Q 036761 238 ----WMKKNLA---ERAVDIYNVLKE--KKFVLLLDDVW 267 (897)
Q Consensus 238 ----~~~~~~~---~~~~~l~~~l~~--~~~LlVlDdv~ 267 (897)
....+.+ +....+...++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 233445555543 34588888873
No 258
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.77 E-value=0.0092 Score=57.97 Aligned_cols=42 Identities=21% Similarity=0.413 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHhcc---CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 159 GMQSQLDKVWSCLVE---EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|++.++.+.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677777777654 356799999999999999999998755
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.67 E-value=0.046 Score=59.23 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+|.++|.+|+||||++..++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999887764
No 260
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.59 E-value=0.017 Score=51.33 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=33.6
Q ss_pred EEEccCCCCCc--ccCccccCccCCCEeeccCCCccccChh-hhcCCcCcEecCCCCcc
Q 036761 571 VLNLSGARRMS--SFPLGISVLVSLQHLDLSGTAIRELPKE-LNALENLQCLNLEETHF 626 (897)
Q Consensus 571 ~L~Ls~~~~~~--~lp~~i~~L~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~ 626 (897)
+++.+++ .++ .+|..+. .+|++|+|++|+|+.+|.. |..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5666666 555 6664432 3577777777777777654 56667777777777654
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.59 E-value=0.04 Score=56.84 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCCchhccccHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFNDSWMKKNLAERAVDIYNV 253 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 253 (897)
...+++|+|.+|+||||++..++........ ..+..+.... .....+.+....+..+.+.. ...+...+...+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~~- 179 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKEL- 179 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHHH-
Confidence 4579999999999999999999876642111 2344554432 22333444444444444321 11233344334433
Q ss_pred hccCceEEEEecc
Q 036761 254 LKEKKFVLLLDDV 266 (897)
Q Consensus 254 l~~~~~LlVlDdv 266 (897)
+ .+.=++|+|-.
T Consensus 180 ~-~~~dlvIiDT~ 191 (296)
T 2px0_A 180 F-SEYDHVFVDTA 191 (296)
T ss_dssp G-GGSSEEEEECC
T ss_pred h-cCCCEEEEeCC
Confidence 3 34457888843
No 262
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.49 E-value=0.042 Score=58.29 Aligned_cols=93 Identities=22% Similarity=0.251 Sum_probs=54.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC---CC-CCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh----------cc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ---GD-FDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW----------MK 240 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~----------~~ 240 (897)
.-.++.|+|+.|+|||||+..++...... +. -..++|++....+....+ ..+++..+...... ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999998765211 11 134588887665543333 33555544322110 01
Q ss_pred ccHHHHHHHHHHHhc------cCceEEEEecccc
Q 036761 241 KNLAERAVDIYNVLK------EKKFVLLLDDVWQ 268 (897)
Q Consensus 241 ~~~~~~~~~l~~~l~------~~~~LlVlDdv~~ 268 (897)
....++...+...+. .+.-+||+|.+-.
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 112233444445554 3677999998843
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.48 E-value=0.054 Score=58.29 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC----CCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch-------hccccH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ----GDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS-------WMKKNL 243 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 243 (897)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....+....+. .+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 45799999999999999999775332111 133578898877766655443 366666653211 011112
Q ss_pred H---HHHHHHHHHhc-cCceEEEEecc
Q 036761 244 A---ERAVDIYNVLK-EKKFVLLLDDV 266 (897)
Q Consensus 244 ~---~~~~~l~~~l~-~~~~LlVlDdv 266 (897)
. +....+...+. .+.-+||+|.+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecch
Confidence 2 22233333333 35678888887
No 264
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.45 E-value=0.034 Score=55.19 Aligned_cols=48 Identities=27% Similarity=0.235 Sum_probs=31.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEI 226 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 226 (897)
.-.+++|+|++|+|||||++.++...... -..++|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 44689999999999999999998654311 12466665443 34444433
No 265
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.35 E-value=0.014 Score=56.95 Aligned_cols=40 Identities=28% Similarity=0.253 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 162 SQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+-+++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566665543 4567999999999999999999987663
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.32 E-value=0.018 Score=60.51 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=34.1
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCEEEEEEeCCc
Q 036761 166 KVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLG-QGDFDFLIWVVVSKD 217 (897)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~ 217 (897)
++++.+.. ..-..++|+|++|+|||||++.+.+.... ...+.+ +++-+++.
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 34444443 45679999999999999999988775432 123333 45667754
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.23 E-value=0.082 Score=52.29 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCC---C-CCCEEEEEEeCCcCCHHHHHHHHHHHhCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQ---G-DFDFLIWVVVSKDLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 233 (897)
.-.+++|+|+.|+|||||++.++...... . .....+|+.-........ ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 45799999999999999999998643211 1 235678887655444333 3334444443
No 268
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.14 E-value=0.061 Score=56.23 Aligned_cols=52 Identities=10% Similarity=0.034 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKK 230 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 230 (897)
...++.|.|.+|+||||+|.+++.....++ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 457999999999999999999987664333 678888766 4566666666554
No 269
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.12 E-value=0.021 Score=50.72 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=46.4
Q ss_pred CEeeccCCCcc--ccChhhhcCCcCcEecCCCCccccccChhhhhcCCccceeeccccC
Q 036761 594 QHLDLSGTAIR--ELPKELNALENLQCLNLEETHFLITIPRQLISSFSSLIVLRMFGVG 650 (897)
Q Consensus 594 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~~l~~L~~L~l~~~~ 650 (897)
..++.++++++ .+|..+. .+|++|+|++|. +..+|.+++..+++|++|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47889999998 9997654 579999999998 588998888999999999998865
No 270
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.11 E-value=0.012 Score=62.21 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999988877653 468899999999999999999876
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.05 E-value=0.011 Score=55.93 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|+|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.00 E-value=0.012 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 273
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.97 E-value=0.018 Score=63.93 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=37.8
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..++|++..++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45799999999888777543 4788999999999999999998763
No 274
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.95 E-value=0.075 Score=62.22 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=79.5
Q ss_pred CCCccchHHHHHHHHHhcc-------------CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH
Q 036761 155 EPTVGMQSQLDKVWSCLVE-------------EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE 221 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 221 (897)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++... .. ++.++. .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~--~~-----f~~v~~----~ 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN-----FISIKG----P 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT--CE-----EEECCH----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC--Cc-----eEEecc----c
Confidence 4567888888888765531 1235678999999999999999999872 21 223321 1
Q ss_pred HHHHHHHHHhCCCCchhccccHHHHHHHHHHHhccCceEEEEecccccc--------c--------cccccccCCC-CCC
Q 036761 222 KIQEIIGKKVGLFNDSWMKKNLAERAVDIYNVLKEKKFVLLLDDVWQRV--------A--------FTTVGVPIPP-RDK 284 (897)
Q Consensus 222 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--------~--------~~~~~~~l~~-~~~ 284 (897)
+ ++.. +...+...+...+...-+..+.+|+||+++... . ...+...+.. ...
T Consensus 546 ~----l~s~-------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 546 E----LLTM-------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp H----HHTT-------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred h----hhcc-------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 1 1111 122333333333333334578999999996421 0 0111111110 111
Q ss_pred CCcEEEEecCChhH-----hhhcCCCceEEcCCCChHHHHHHHHHHhCCCccCCCCcHHHHHHHHHHHcCCc
Q 036761 285 SASKVVFTTRSTEV-----CGWMGAHKNFEVGCLSANDARELFRQNVGEETLNGHPDIRELSETVTKECGSL 351 (897)
Q Consensus 285 ~~s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~gl 351 (897)
.+.-||-||..++. ...-.-...+.++.-+.++-.++|+.+........+-++ ..+++.+.|.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 21344546655433 111133567788777777777888777644332222233 3455555553
No 275
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.91 E-value=0.065 Score=58.26 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIG 228 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 228 (897)
-..++|+|.+|+|||||++.+....... +.+..+++.+++.. ...+++..+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 3568999999999999999988765322 22445667777654 3445555554
No 276
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.87 E-value=0.13 Score=55.71 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=45.2
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHH
Q 036761 167 VWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKK 230 (897)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 230 (897)
.++.+.. .+-..++|.|.+|+|||+|+..+.+... +.+-+.++++-+++.. ...++.+.+.+.
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4454443 4567899999999999999999988753 3345677888888654 456677777654
No 277
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.84 E-value=0.04 Score=52.51 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=67.9
Q ss_pred hcCCCcccEEEccCCCCCcc-----cCccccCccCCCEeeccCCCcc-----ccChhhhcCCcCcEecCCCCccccc---
Q 036761 563 FKSMPRLKVLNLSGARRMSS-----FPLGISVLVSLQHLDLSGTAIR-----ELPKELNALENLQCLNLEETHFLIT--- 629 (897)
Q Consensus 563 ~~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~--- 629 (897)
+.+-+.|+.|+|+++..++. +-..+..-.+|+.|+|++|.|. .|-+.+..-+.|++|+|++|.+...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 44556677777776423332 3334555567788888887776 3444556667788888888865221
Q ss_pred -cChhhhhcCCccceeeccccCCCCCCCCCCCCccccCccchhHHhcCCCCCCEEEEEeCCcc
Q 036761 630 -IPRQLISSFSSLIVLRMFGVGDWSPNGKKNDSDLFSGGDLLVEALRGLEHLEVLSLTLNNFQ 691 (897)
Q Consensus 630 -lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 691 (897)
+-. .+..-+.|++|+++++....+. ..+...+...+..-+.|+.|+++.+...
T Consensus 117 ala~-aL~~N~tL~~L~L~n~~~~~ig--------~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLR-STLVTQSIVEFKADNQRQSVLG--------NQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHH-HTTTTCCCSEEECCCCSSCCCC--------HHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHH-HHhhCCceeEEECCCCcCcCcC--------HHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 111 1334455778877654210000 0011124456666778888888776643
No 278
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.83 E-value=0.13 Score=53.69 Aligned_cols=58 Identities=21% Similarity=0.240 Sum_probs=36.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCC
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGL 233 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 233 (897)
....+++|+|+.|+||||+++.++...... . ..+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~-g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH-G-FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-C-CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 456899999999999999999998766422 2 2344443322 12344445555666653
No 279
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.78 E-value=0.066 Score=53.62 Aligned_cols=40 Identities=25% Similarity=0.178 Sum_probs=29.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
.-.++.|.|++|+||||||.+++...... -..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 45689999999999999998887654212 24577777554
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.78 E-value=0.024 Score=56.09 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 163 QLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 163 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444444567899999999999999999998775
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.77 E-value=0.014 Score=55.07 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 443
No 282
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.74 E-value=0.56 Score=51.71 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred HHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHH
Q 036761 164 LDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIG 228 (897)
Q Consensus 164 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 228 (897)
++.+..-+ ....++.|.|.+|+||||||..++...... .-..++|++... +..++...+.
T Consensus 193 LD~~~gGl--~~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMTSGF--QRSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp HHHHHSSB--CTTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred HHhhcCCC--CCCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 44444322 345699999999999999999998776421 123577777554 3455555553
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.73 E-value=0.026 Score=60.59 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=36.0
Q ss_pred CccchHHHHHHHHHhc-------------c--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 157 TVGMQSQLDKVWSCLV-------------E--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 157 ~vGr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5899998888887762 1 134578999999999999999999876
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.73 E-value=0.017 Score=56.04 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|+|+.|+||||+|+.++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 285
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.69 E-value=0.012 Score=62.87 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++++|.+..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4579998876665444433333458899999999999999999866
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.67 E-value=0.019 Score=55.10 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+++|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 45789999999999999999998763
No 287
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.62 E-value=0.074 Score=54.99 Aligned_cols=90 Identities=21% Similarity=0.235 Sum_probs=50.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH--HHHHHHHHHhCCCCch-hccccHHHH-HHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE--KIQEIIGKKVGLFNDS-WMKKNLAER-AVDI 250 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~l 250 (897)
...+++|+|++|+||||++..++...... -..+.++... .+... +.+...++..+.+.-. ....+...+ ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 45799999999999999999998776422 1234455433 23222 2233455555432100 011222222 2345
Q ss_pred HHHhccCceEEEEeccc
Q 036761 251 YNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 251 ~~~l~~~~~LlVlDdv~ 267 (897)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55455555688888663
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.60 E-value=0.019 Score=54.49 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.55 E-value=0.019 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 290
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.52 E-value=0.033 Score=60.11 Aligned_cols=46 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred CCCccchHHHHHHHHHhc------------------------------cCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLV------------------------------EEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~------------------------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 346888888887776651 0123568899999999999999999876
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.52 E-value=0.019 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+.|.|+|+.|+||||+|+.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.49 E-value=0.034 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.49 E-value=0.15 Score=55.32 Aligned_cols=90 Identities=20% Similarity=0.139 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC-cCCHHHHHHHHHHHhCCCCch-hccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK-DLQIEKIQEIIGKKVGLFNDS-WMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 252 (897)
...+|.++|++|+||||++..++.....++ ..+..+.... .....+.+.......+.+... ....+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 468999999999999999999987764322 2344444332 112233344444554443211 012233333322233
Q ss_pred Hhc-cCceEEEEecc
Q 036761 253 VLK-EKKFVLLLDDV 266 (897)
Q Consensus 253 ~l~-~~~~LlVlDdv 266 (897)
.+. ...=++++|-.
T Consensus 174 ~a~~~~~DvvIIDTa 188 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTA 188 (433)
T ss_dssp HTTTTTCSEEEEEEC
T ss_pred HHHhcCCCEEEEECC
Confidence 333 33345667765
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.49 E-value=0.038 Score=57.78 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=32.3
Q ss_pred ccchHHHHHHHHHhc----cCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 158 VGMQSQLDKVWSCLV----EEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 158 vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|+-+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445555666666553 3556779999999999999999988765
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.48 E-value=0.017 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.348 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 296
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.47 E-value=0.2 Score=54.56 Aligned_cols=91 Identities=21% Similarity=0.138 Sum_probs=48.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCch-hccccHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS-WMKKNLAERAVDIYN 252 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 252 (897)
..++|.|+|.+|+||||++..++.....+.. ..+.-+..... ....+.+.......+++.-. ....+...+......
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4679999999999999999999877743312 23444554432 23333333344444432100 011234444333334
Q ss_pred Hhcc-CceEEEEecc
Q 036761 253 VLKE-KKFVLLLDDV 266 (897)
Q Consensus 253 ~l~~-~~~LlVlDdv 266 (897)
.++. .-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 4442 2236667764
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.46 E-value=0.026 Score=55.61 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=31.7
Q ss_pred chHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 160 MQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++..+.+.+.+.....++|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555555544578899999999999999999998775
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.43 E-value=0.11 Score=56.16 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=48.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHH--HHHHHHHHhCCCCch-hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEK--IQEIIGKKVGLFNDS-WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 251 (897)
...++.|+|.+|+||||++..++...... -..+..+.. +.+.... .+.......+.+.-. ....+..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 45789999999999999999998877432 223444443 3333332 234445555543210 01123344433333
Q ss_pred HHhccCce-EEEEecc
Q 036761 252 NVLKEKKF-VLLLDDV 266 (897)
Q Consensus 252 ~~l~~~~~-LlVlDdv 266 (897)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44432333 6667744
No 299
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.41 E-value=0.025 Score=54.83 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....+|+|+|+.|+||||+|+.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999988763
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.39 E-value=0.025 Score=53.98 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+|.|.|++|+||||+++.++....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999988764
No 301
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.36 E-value=0.0031 Score=60.27 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776655
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.29 E-value=0.023 Score=54.62 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998763
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.21 E-value=0.02 Score=55.64 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 304
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.18 E-value=0.041 Score=56.55 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....+|+|+|..|+||||||+.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999877663
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.16 E-value=0.077 Score=67.85 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
..++|.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++...+.. .....++....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 567999999999999999999988763 3345678888887776665 44555322111 1223344555555
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5544 456799999994
No 306
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.15 E-value=0.049 Score=51.90 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=70.6
Q ss_pred cCCccceeeehhccccccccc----hhhhcCCCcccEEEccCCCCCcc-----cCccccCccCCCEeeccCCCcc-----
Q 036761 539 PTCLHLLTLFLIFNEELEMIT----SDFFKSMPRLKVLNLSGARRMSS-----FPLGISVLVSLQHLDLSGTAIR----- 604 (897)
Q Consensus 539 ~~~~~L~~L~l~~~~~l~~l~----~~~~~~l~~L~~L~Ls~~~~~~~-----lp~~i~~L~~L~~L~L~~~~i~----- 604 (897)
.+-+.|+.|+|++++.+..-. ...+..-+.|+.|+|++| .++. +...+..-..|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345677888887433443211 223566788999999999 6653 3334445678999999999887
Q ss_pred ccChhhhcCCcCcEecCCCCcc--ccc-----cChhhhhcCCccceeecccc
Q 036761 605 ELPKELNALENLQCLNLEETHF--LIT-----IPRQLISSFSSLIVLRMFGV 649 (897)
Q Consensus 605 ~lp~~i~~L~~L~~L~L~~~~~--l~~-----lp~~~~~~l~~L~~L~l~~~ 649 (897)
.+-+.+..-+.|++|+|++|.. ++. +.. ++..-+.|++|++..+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCC
Confidence 3445566667799999986531 121 222 2556678888888654
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.14 E-value=0.03 Score=54.63 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345789999999999999999998876
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.13 E-value=0.028 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 309
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.13 E-value=0.023 Score=53.96 Aligned_cols=25 Identities=44% Similarity=0.428 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998875
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.11 E-value=0.031 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+||||+++.+....
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998764
No 311
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.08 E-value=0.19 Score=54.79 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=45.2
Q ss_pred HHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHH
Q 036761 168 WSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKK 230 (897)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 230 (897)
++.+.. .+-..++|.|.+|+|||+|+..+.+... +.+-+.++++-+++.. ...++.+++...
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 344433 4567899999999999999999988753 3345778888888765 456677777654
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.06 E-value=0.029 Score=54.27 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|+|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 356799999999999999999998765
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.04 E-value=0.027 Score=56.82 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 578999999999999999998876
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.04 E-value=0.025 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998866
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.04 E-value=0.024 Score=55.07 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.03 E-value=0.027 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999876
No 317
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.02 E-value=0.024 Score=53.83 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.|.|+|++|+|||||++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998765
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.93 E-value=0.024 Score=53.49 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 319
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.88 E-value=0.035 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 320
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.88 E-value=0.049 Score=51.91 Aligned_cols=39 Identities=15% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 162 SQLDKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 162 ~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 335555555543 233479999999999999999998876
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.85 E-value=0.033 Score=53.08 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
....|+|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.84 E-value=0.037 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998765
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.83 E-value=0.031 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLH 197 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~ 197 (897)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45689999999999999999644
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.82 E-value=0.034 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999986
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.81 E-value=0.039 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
+...+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45679999999999999999999875
No 326
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.80 E-value=0.034 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988765
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.79 E-value=0.053 Score=55.79 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.78 E-value=0.034 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.77 E-value=0.037 Score=54.03 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.75 E-value=0.035 Score=54.16 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999876
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.73 E-value=0.14 Score=52.67 Aligned_cols=89 Identities=17% Similarity=0.080 Sum_probs=50.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCc-CCHHHHHHHHHHHhCCCCch-hccccHHHHHHHHHHH
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS-WMKKNLAERAVDIYNV 253 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~~ 253 (897)
..+++++|.+|+||||++..++...... -..+.++..... ....+.+....+..+.+--. ....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5799999999999999999988766422 234555554322 22233344455555543110 0123444554444445
Q ss_pred hccCc-eEEEEecc
Q 036761 254 LKEKK-FVLLLDDV 266 (897)
Q Consensus 254 l~~~~-~LlVlDdv 266 (897)
++.+. =++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 54233 37778865
No 332
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.72 E-value=0.026 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998875
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.72 E-value=0.036 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.72 E-value=0.04 Score=53.68 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998754
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.72 E-value=0.039 Score=53.66 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998765
No 336
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.70 E-value=0.034 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 337
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.70 E-value=0.038 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 55789999999999999999998765
No 338
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.69 E-value=0.044 Score=57.01 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhccC---CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 161 QSQLDKVWSCLVEE---PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 161 ~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...++.+.+++... ....+.|+|++|+|||+||+.+++...
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 33444555566531 247889999999999999999998764
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.64 E-value=0.04 Score=51.20 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..++++|+|..|+|||||+..+.....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 467999999999999999999988764
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.64 E-value=0.03 Score=53.49 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 341
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.63 E-value=0.044 Score=59.49 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=36.0
Q ss_pred CCCccchHHHHHHHHHhcc--------------CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVE--------------EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.++.++.+...+.. -..+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578988888887655521 124568899999999999999999877
No 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.61 E-value=0.036 Score=53.78 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.57 E-value=0.041 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 344
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.57 E-value=0.037 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 345
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.55 E-value=0.038 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+|||||++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999665
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.51 E-value=0.039 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.48 E-value=0.041 Score=52.45 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|+|.|+.|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.47 E-value=0.032 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.47 E-value=0.064 Score=53.66 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHhcc--CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 159 GMQSQLDKVWSCLVE--EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+....+.++.+.... ....+|+|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 333444444433322 356789999999999999999998765
No 350
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.45 E-value=0.028 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=18.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998876
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.44 E-value=0.034 Score=53.71 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 352
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.44 E-value=0.044 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999998773
No 353
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.43 E-value=0.41 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..++|+|+|.+|+||||++..++....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987664
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.38 E-value=0.043 Score=53.34 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 355
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.35 E-value=0.21 Score=52.18 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKV 231 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 231 (897)
...++.|.|.+|+||||+|..++..... .-..++|++.. .+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHHHh
Confidence 4568999999999999999999877643 23467777654 45666666665543
No 356
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.35 E-value=0.19 Score=51.72 Aligned_cols=89 Identities=19% Similarity=0.138 Sum_probs=48.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHH--HHHHHHHHHhCCCCch-hccccHHHHHH-HH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIE--KIQEIIGKKVGLFNDS-WMKKNLAERAV-DI 250 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~~~-~l 250 (897)
...+++|+|.+|+||||++..++...... -..+.++... ..... ..+..+.+..++..-. ....++.++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999999998776422 1234444433 22222 1233444555443210 01223444433 33
Q ss_pred HHHhccCceEEEEecc
Q 036761 251 YNVLKEKKFVLLLDDV 266 (897)
Q Consensus 251 ~~~l~~~~~LlVlDdv 266 (897)
......+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345557888875
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.33 E-value=0.046 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.26 E-value=0.05 Score=54.85 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|.|+.|+||||+|+.+....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998865
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.24 E-value=0.047 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 360
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.20 E-value=0.051 Score=51.98 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998863
No 361
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.20 E-value=0.049 Score=56.64 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
++.+||+|.|-||+||||.|..++--....+ ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 5789999999999999999888776664222 2355566553
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.19 E-value=0.045 Score=52.96 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|.|.|++|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998875
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.13 E-value=0.048 Score=53.98 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.05 E-value=0.051 Score=52.15 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.01 E-value=0.059 Score=56.05 Aligned_cols=28 Identities=29% Similarity=0.269 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....+|+|+|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4567999999999999999999987653
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.01 E-value=0.053 Score=52.89 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCE
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDF 208 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 208 (897)
..+|+|.|+.|+||||+|+.+.+.... ..++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999887532 24454
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.00 E-value=0.061 Score=53.95 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455799999999999999999987753
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.98 E-value=0.082 Score=54.89 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|+.|+||||+|+.+..-.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999987765
No 369
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.98 E-value=0.32 Score=53.26 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
...+++|+|..|+|||||++.++...... ...+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 45799999999999999999998766322 2344444444444
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.96 E-value=0.057 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|+|+.|+||||+++.++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999999765
No 371
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.95 E-value=0.056 Score=52.57 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345799999999999999999998765
No 372
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.94 E-value=0.19 Score=52.67 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccC-CCCCCEEEEEEeCCc
Q 036761 166 KVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLG-QGDFDFLIWVVVSKD 217 (897)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~ 217 (897)
++++.+.. ..-..++|+|.+|+|||+|+..+++.... ...+.+ +++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 45565544 45678999999999999999998886532 122333 45666653
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.93 E-value=0.056 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 374
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.91 E-value=0.069 Score=49.18 Aligned_cols=27 Identities=37% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455799999999999999999998765
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.90 E-value=0.061 Score=52.10 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 376
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.90 E-value=0.31 Score=53.57 Aligned_cols=52 Identities=8% Similarity=-0.077 Sum_probs=37.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
...++.|.|.+|+||||+|..++...... .-..++|++... +..++...+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence 45689999999999999999988776422 123577777653 45566666554
No 377
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.86 E-value=0.055 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998876
No 378
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.82 E-value=0.052 Score=53.33 Aligned_cols=26 Identities=38% Similarity=0.562 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998755
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.82 E-value=0.056 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 380
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.82 E-value=0.052 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 381
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.78 E-value=0.12 Score=53.74 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....+|+|+|.+|+||||++..++....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999887664
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.68 E-value=0.052 Score=53.47 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|.|.|+.|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.66 E-value=0.04 Score=51.57 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
.+++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999987664
No 384
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.66 E-value=0.06 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.65 E-value=0.033 Score=54.56 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998766
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.59 E-value=0.07 Score=52.29 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45799999999999999999998765
No 387
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.55 E-value=0.16 Score=54.62 Aligned_cols=91 Identities=9% Similarity=0.057 Sum_probs=53.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCC----EEEEEEeCCc-CCHHHHHHHHHHHhCCCCch----hccccHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFD----FLIWVVVSKD-LQIEKIQEIIGKKVGLFNDS----WMKKNLAE 245 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~ 245 (897)
.-..++|.|..|+|||+|+..+++.... +.+ .++++-+++. ....++.+.+.+.=.+.... ..++....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 4456789999999999999999987643 223 5666777654 34556666654431111000 01111111
Q ss_pred ------HHHHHHHHhc---cCceEEEEeccc
Q 036761 246 ------RAVDIYNVLK---EKKFVLLLDDVW 267 (897)
Q Consensus 246 ------~~~~l~~~l~---~~~~LlVlDdv~ 267 (897)
..-.+-++++ ++.+|+++||+-
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1123445554 688999999984
No 388
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.51 E-value=0.067 Score=55.33 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+++|+|++|+||||+++.++.-..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999987664
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.51 E-value=0.078 Score=50.11 Aligned_cols=25 Identities=36% Similarity=0.407 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|+|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 390
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.49 E-value=0.28 Score=54.97 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
...++.|.|.+|+||||||.+++.....+ +-..++|++... +..++...++.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHH
Confidence 45789999999999999999998876422 134677777654 45666666544
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.48 E-value=0.074 Score=49.87 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++++|+|+.|+|||||++.+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998765
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.47 E-value=0.17 Score=58.14 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=37.7
Q ss_pred CCCccchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45799999888887777554 588999999999999999999876
No 393
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.39 E-value=0.26 Score=47.31 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLG 202 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~ 202 (897)
.|+|-|.-|+||||.++.+++....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3788999999999999999988753
No 394
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.26 E-value=0.087 Score=51.39 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 455789999999999999999998765
No 395
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.24 E-value=0.075 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.22 E-value=0.086 Score=51.72 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHh
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.22 E-value=0.071 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|.|.|++|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.21 E-value=0.07 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.15 E-value=0.085 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.657 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 400
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.14 E-value=0.4 Score=52.51 Aligned_cols=51 Identities=10% Similarity=-0.023 Sum_probs=35.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
...++.|.|.+|+||||+|.+++.....+ -..++|++... +..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHH
Confidence 45689999999999999999998776433 24677776554 34445554443
No 401
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.14 E-value=0.067 Score=50.99 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 402
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.13 E-value=0.092 Score=53.75 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999998865
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.11 E-value=0.066 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..+|+|+|+.|+||||+++.++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999866
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.09 E-value=0.25 Score=63.35 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCch---hccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDS---WMKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~ 251 (897)
...++.|+|++|+||||||.+++..... .-..++|++.....+... ++.++...+. ....+.++....++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4579999999999999999999887642 234688888877776542 5566654322 12345566666665
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
...+ .+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 5443 456699999985
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.07 E-value=0.15 Score=54.14 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=28.9
Q ss_pred HHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 164 LDKVWSCLV--EEPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 164 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
..++.+.+. .+...+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444443 35678999999999999999999887653
No 406
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.03 E-value=0.092 Score=54.52 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999865
No 407
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.95 E-value=0.22 Score=62.93 Aligned_cols=87 Identities=18% Similarity=0.122 Sum_probs=59.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
.-+++.|.|.+|+||||||.+++..... .-..++|++.....+.. .++.++...+.. ...+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4579999999999999999998876632 23578899888777653 256666543321 2334555655555
Q ss_pred HHhc-cCceEEEEecccc
Q 036761 252 NVLK-EKKFVLLLDDVWQ 268 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~~ 268 (897)
...+ .+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 5443 4556999999853
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.92 E-value=0.087 Score=54.52 Aligned_cols=24 Identities=29% Similarity=0.330 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 409
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.88 E-value=0.088 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+|+|.|+.|+||||+|+.+....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.86 E-value=0.089 Score=52.33 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998754
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.83 E-value=0.099 Score=54.02 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+++|+|+.|+||||+++.++....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987663
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.82 E-value=0.081 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..|.|.|++|+||||+|+.++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 413
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.82 E-value=0.084 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHh
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHN 198 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~ 198 (897)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 457999999999999999998873
No 414
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.80 E-value=0.2 Score=53.96 Aligned_cols=94 Identities=6% Similarity=0.105 Sum_probs=53.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCC--------CCCC-EEEEEEeCCc-CCHHHHHHHHHHHhCCCC-----chh
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQ--------GDFD-FLIWVVVSKD-LQIEKIQEIIGKKVGLFN-----DSW 238 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-----~~~ 238 (897)
..-..++|.|..|+|||+|+..+++..... ++-+ .++++-+++. ....++.+.+.+.=.+.. ...
T Consensus 145 grGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 145 VRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp BTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred ccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 345677899999999999999998876431 1112 5666767654 345566666544210100 000
Q ss_pred ccccHHH-----HHHHHHHHhc---cCceEEEEeccc
Q 036761 239 MKKNLAE-----RAVDIYNVLK---EKKFVLLLDDVW 267 (897)
Q Consensus 239 ~~~~~~~-----~~~~l~~~l~---~~~~LlVlDdv~ 267 (897)
....... ..-.+-++++ ++.+|+++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111111 1123445554 688999999984
No 415
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.78 E-value=0.1 Score=54.29 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|+|+|+.|+|||||++.+....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355799999999999999999998765
No 416
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.76 E-value=0.084 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 417
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.71 E-value=0.59 Score=50.78 Aligned_cols=95 Identities=14% Similarity=0.113 Sum_probs=54.7
Q ss_pred HHHhcc-CCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hcc
Q 036761 168 WSCLVE-EPVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WMK 240 (897)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~ 240 (897)
++.+.. ..-..++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. .+.++.+.+.+.=.+.... ..+
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad 229 (513)
T 3oaa_A 153 VDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATAS 229 (513)
T ss_dssp HHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTT
T ss_pred eccccccccCCEEEeecCCCCCcchHHHHHHHhhc---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCC
Confidence 344432 45567899999999999996 5666642 222346788888754 4556666655432221100 001
Q ss_pred ccH----------HHHHHHHHHHhccCceEEEEeccc
Q 036761 241 KNL----------AERAVDIYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 241 ~~~----------~~~~~~l~~~l~~~~~LlVlDdv~ 267 (897)
+.. -...+.++. +++.+||++||+-
T Consensus 230 ~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 264 (513)
T 3oaa_A 230 ESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDLS 264 (513)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETHH
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecChH
Confidence 111 112233332 5789999999984
No 418
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.71 E-value=0.085 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.65 E-value=0.098 Score=51.94 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|.|.|+.|+||||+|+.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 420
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.64 E-value=0.094 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 355799999999999999999988654
No 421
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.64 E-value=0.084 Score=51.97 Aligned_cols=26 Identities=35% Similarity=0.319 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999988654
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.63 E-value=0.068 Score=53.03 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=17.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH-hcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLH-NKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~-~~~ 200 (897)
...+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 543
No 423
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.55 E-value=0.32 Score=52.99 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHhcc-CCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hc
Q 036761 168 WSCLVE-EPVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFD-FLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WM 239 (897)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~ 239 (897)
++.+.. ..-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. ...++.+.+...=.+.... ..
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~ata 228 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASA 228 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECT
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECC
Confidence 444433 45567899999999999996 4677654 235 34677777654 4556666665432221110 00
Q ss_pred cccH-HHH-----HHHHHHHh--ccCceEEEEeccc
Q 036761 240 KKNL-AER-----AVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 240 ~~~~-~~~-----~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
++.. ... .-.+-+++ .++.+|+++||+-
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 229 SEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111 111 11233333 4789999999984
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.47 E-value=0.14 Score=53.27 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
...++|+|+|-||+||||+|..++......+ ..++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCC
Confidence 4678999999999999999998887764332 2456666554
No 425
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.45 E-value=0.078 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.177 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.-.+++|+|+.|+|||||++.++.-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998765
No 426
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.44 E-value=0.12 Score=47.48 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.|+|+|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 427
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.35 E-value=0.19 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....|+|.|+.|+||||+++.+.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999999874
No 428
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.34 E-value=0.27 Score=62.22 Aligned_cols=86 Identities=20% Similarity=0.135 Sum_probs=62.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHHHhCCCCchh---ccccHHHHHHHHH
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGKKVGLFNDSW---MKKNLAERAVDIY 251 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 251 (897)
.-++|-|+|+.|+||||||.++.... +..-...+|+.+....+..- ++.+++..+.. .+.+-++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~--~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45799999999999999999998766 44557788998888777653 77777765432 2334455555555
Q ss_pred HHhc-cCceEEEEeccc
Q 036761 252 NVLK-EKKFVLLLDDVW 267 (897)
Q Consensus 252 ~~l~-~~~~LlVlDdv~ 267 (897)
..++ +..-+||+|-|.
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 6665 456699999883
No 429
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.33 E-value=0.077 Score=49.74 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
++.|+|.+|+||||+|.+++.. . ..++++.-+..++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-----~~~~yiaT~~~~d 36 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-----PQVLYIATSQILD 36 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-----SSEEEEECCCC--
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-----CCeEEEecCCCCC
Confidence 3789999999999999999864 1 2355555544433
No 430
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.33 E-value=0.11 Score=51.72 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999997754
No 431
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.29 E-value=0.11 Score=52.99 Aligned_cols=26 Identities=27% Similarity=0.246 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999999875
No 432
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.29 E-value=0.11 Score=49.60 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998764
No 433
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.22 E-value=0.11 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.131 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.+.|.|.|+.|+||||||..+..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998765
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.11 E-value=0.1 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45789999999999999999987654
No 435
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.02 E-value=0.12 Score=52.32 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999998654
No 436
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.02 E-value=0.29 Score=53.32 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=54.1
Q ss_pred HHHhcc-CCceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hc
Q 036761 168 WSCLVE-EPVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFD-FLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WM 239 (897)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~ 239 (897)
++.+.. ..-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+...=.+.... ..
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~ata 241 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASA 241 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECT
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECC
Confidence 344432 45567899999999999996 4676654 245 35777777654 4556666665421111000 00
Q ss_pred cccH-HHH-----HHHHHHHh--ccCceEEEEeccc
Q 036761 240 KKNL-AER-----AVDIYNVL--KEKKFVLLLDDVW 267 (897)
Q Consensus 240 ~~~~-~~~-----~~~l~~~l--~~~~~LlVlDdv~ 267 (897)
++.. ... .-.+-+++ +++.+|+++||+-
T Consensus 242 d~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 242 SDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111 111 11233333 4789999999984
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.99 E-value=0.13 Score=52.04 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999987663
No 438
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.98 E-value=0.13 Score=54.22 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
...+++|+|+.|+||||+++.++....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999987764
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.98 E-value=0.072 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|..|+||||+|+.+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 440
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.90 E-value=0.11 Score=51.74 Aligned_cols=26 Identities=38% Similarity=0.463 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 441
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.90 E-value=0.12 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.-.+++|+|+.|.|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 442
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.89 E-value=0.13 Score=47.71 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 443
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.87 E-value=0.22 Score=52.55 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.6
Q ss_pred hccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 171 LVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 171 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
+.+...+++.+.|.||+||||+|..++........-..++-|......+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 3345678999999999999999999887764102233466666654433
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.85 E-value=0.095 Score=51.03 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997754
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.83 E-value=0.11 Score=52.55 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 55799999999999999999998755
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.82 E-value=0.13 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 447
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.82 E-value=0.13 Score=52.01 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 355799999999999999999988654
No 448
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.79 E-value=0.24 Score=47.19 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44588999999999999999998764
No 449
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.78 E-value=0.13 Score=51.23 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999987654
No 450
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.77 E-value=0.092 Score=60.01 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=32.8
Q ss_pred CCCccchHHHHHHHHHhccCCce-----------EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 155 EPTVGMQSQLDKVWSCLVEEPVG-----------IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-----------vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
+.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34578777666665444433211 58899999999999999998765
No 451
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.75 E-value=0.12 Score=52.22 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998654
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.74 E-value=0.12 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 453
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.72 E-value=0.38 Score=52.15 Aligned_cols=100 Identities=9% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCC--CCEEEEEEeCCcC-CHHHHHHHHHHHhCCCCch----hc
Q 036761 168 WSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGD--FDFLIWVVVSKDL-QIEKIQEIIGKKVGLFNDS----WM 239 (897)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~ 239 (897)
++.+.. ..-..++|.|.+|+|||+|+..+++.....+. -+.++++-+++.. ...++.+.+...=.+.... ..
T Consensus 143 ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ts 222 (469)
T 2c61_A 143 IDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLA 222 (469)
T ss_dssp HHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEET
T ss_pred eeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECC
Confidence 444433 34567788999999999999999987753221 1456677776543 4556666665431111100 01
Q ss_pred cccHHH------HHHHHHHHhc---cCceEEEEeccc
Q 036761 240 KKNLAE------RAVDIYNVLK---EKKFVLLLDDVW 267 (897)
Q Consensus 240 ~~~~~~------~~~~l~~~l~---~~~~LlVlDdv~ 267 (897)
++.... ..-.+-++++ ++.+|+++||+-
T Consensus 223 d~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 223 DDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111 1122334444 689999999983
No 454
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.71 E-value=0.12 Score=51.76 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45789999999999999999987764
No 455
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.70 E-value=0.14 Score=52.65 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 466799999999999999999988755
No 456
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.68 E-value=0.11 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.66 E-value=0.13 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+|.|+|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 458
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.66 E-value=0.27 Score=51.51 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.7
Q ss_pred hccCCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC
Q 036761 171 LVEEPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ 219 (897)
Q Consensus 171 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 219 (897)
+.+...+++.+.|-||+||||+|..++..... .-..++-|......+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~--~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK--VRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT--SSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh--CCCcEEEEECCCCCC
Confidence 33455788899999999999999999887742 334566666664443
No 459
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.66 E-value=0.16 Score=51.26 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEE-EeCCcCCHHHHHHHHH--HHhCCCCchhccccHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWV-VVSKDLQIEKIQEIIG--KKVGLFNDSWMKKNLAERAVDI 250 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv-~~~~~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~~~l 250 (897)
....+++|+|+.|+|||||++.+..-... .+...+++ ...-.+-.... ..+. ..++. +.......+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl--------~~~~l~~~l 91 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHK-KSIVNQREVGE--------DTKSFADAL 91 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCCS-SSEEEEEEBTT--------TBSCHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcceeecCCc-ceeeeHHHhCC--------CHHHHHHHH
Confidence 45679999999999999999998765421 11222222 21100000000 0000 00110 011234566
Q ss_pred HHHhccCceEEEEeccccccccccccccCCCCCCCCcEEEEecCChhH
Q 036761 251 YNVLKEKKFVLLLDDVWQRVAFTTVGVPIPPRDKSASKVVFTTRSTEV 298 (897)
Q Consensus 251 ~~~l~~~~~LlVlDdv~~~~~~~~~~~~l~~~~~~~s~iivTtR~~~v 298 (897)
.+.+..++=++++|+.-+......+.... ..| .-|++||.+..+
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g-~~vl~t~H~~~~ 135 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETG-HLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTT-CEEEEEECCSSH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccC-CEEEEEeCcchH
Confidence 67777777889999986544333222221 223 567888876543
No 460
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.61 E-value=0.15 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
..-.+++|+|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35579999999999999999999874
No 461
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.54 E-value=0.15 Score=49.14 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.|+|+|..|+|||||.+.+....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998764
No 462
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.51 E-value=0.14 Score=51.47 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999997654
No 463
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.45 E-value=0.14 Score=51.61 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 355799999999999999999998754
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.38 E-value=0.14 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 355799999999999999999997654
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.36 E-value=0.13 Score=51.41 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|.|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999998765
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.32 E-value=0.15 Score=46.98 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.|.|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998664
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.29 E-value=0.14 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988644
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.26 E-value=0.44 Score=45.92 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEE
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFL 209 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~ 209 (897)
.-|+|-|.-|+||||+++.+++... ..+..+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~--~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV--KDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT--TTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH--CCCCEE
Confidence 4688999999999999999999883 344433
No 469
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.24 E-value=0.17 Score=48.84 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 159 GMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
|+....+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333444444444444455678899999999999999988654
No 470
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.20 E-value=0.23 Score=48.19 Aligned_cols=38 Identities=32% Similarity=0.218 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
-.|.+.|.||+||||+|..++.....++ ++ +..+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G-~~-V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQG-VR-VMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT-CC-EEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCC-CC-EEEEEeCC
Confidence 3478899999999999988887764332 33 44445544
No 471
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.20 E-value=0.31 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
....|.|.|+.|+||||+++.+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998874
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.19 E-value=0.31 Score=48.06 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=27.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEE
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWV 212 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 212 (897)
...|.|.|+.|+||||+++.+.+.... ..+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 468999999999999999999988753 345533333
No 473
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.13 E-value=0.14 Score=51.45 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 474
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.13 E-value=0.29 Score=48.90 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=28.2
Q ss_pred HHHHHHHhccC--CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 164 LDKVWSCLVEE--PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 164 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-+..|+... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455666542 24579999999999999999999864
No 475
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.13 E-value=0.16 Score=51.53 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355799999999999999999987654
No 476
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.12 E-value=0.75 Score=50.60 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=41.3
Q ss_pred HHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCC-HHHHHHHH
Q 036761 167 VWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQ-IEKIQEII 227 (897)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 227 (897)
+++.+.. ..-..++|.|..|+|||+|+..+++.. +-+.++++-+++... ..++.+.+
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4454443 456789999999999999999998754 235788888887654 45555554
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.09 E-value=0.16 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
-.|+|+|.+|+|||||+..+....
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 467899999999999999998754
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.09 E-value=0.14 Score=52.19 Aligned_cols=26 Identities=42% Similarity=0.454 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55689999999999999999998765
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.08 E-value=0.17 Score=53.84 Aligned_cols=27 Identities=26% Similarity=0.060 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999754
No 480
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.01 E-value=0.19 Score=49.96 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 481
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.96 E-value=0.19 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
...|+|.|..|+||||+++.+++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 482
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.92 E-value=0.31 Score=53.93 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=31.4
Q ss_pred cchHHHHHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 159 GMQSQLDKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+..+.++.+...+.++. +.+.|.|.+|+||||++..+.....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455556666665433 4899999999999999999887764
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.88 E-value=0.42 Score=46.44 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=26.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEE
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFL 209 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~ 209 (897)
...|.|.|+.|+||||+++.+.+.... ..+..+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc
Confidence 468999999999999999999988753 334543
No 484
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.83 E-value=0.29 Score=46.36 Aligned_cols=34 Identities=26% Similarity=0.506 Sum_probs=26.2
Q ss_pred HHHHHHhccCCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 165 DKVWSCLVEEPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 165 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
..+.+ +.......|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44555 33455677899999999999999999854
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.82 E-value=0.18 Score=47.86 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
..|+|+|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 486
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.80 E-value=0.17 Score=51.30 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhcc
Q 036761 178 IVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 487
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.79 E-value=0.18 Score=47.45 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=25.9
Q ss_pred HHHHHHhcc-CCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 165 DKVWSCLVE-EPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 165 ~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.++.+.+.. .....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344444444 45678899999999999999988743
No 488
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.79 E-value=0.33 Score=52.96 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=50.6
Q ss_pred CceEEEEEcCCCCcHHHHH-HHHHhcccCCCCCC-EEEEEEeCCcC-CHHHHHHHHHHHhCCCC--------chhc----
Q 036761 175 PVGIVGLYGMGGVGKTTLL-THLHNKFLGQGDFD-FLIWVVVSKDL-QIEKIQEIIGKKVGLFN--------DSWM---- 239 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~--------~~~~---- 239 (897)
.-..++|.|..|+|||+|| ..+.+.. . -+ .++++-+++.. ...++.+.+...=.+.. +...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 4567899999999999996 5777654 2 34 45777777654 34455555543211100 0000
Q ss_pred --cccHHHHHHHHHHHhccCceEEEEeccc
Q 036761 240 --KKNLAERAVDIYNVLKEKKFVLLLDDVW 267 (897)
Q Consensus 240 --~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 267 (897)
....-...+.++. .++.+|+++||+-
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 0011223334444 5899999999984
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.76 E-value=0.17 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998764
No 490
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.69 E-value=0.21 Score=47.07 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
.....|+|+|.+|+|||||...+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999998765
No 491
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.67 E-value=0.17 Score=52.31 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=34.2
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCCcCCHHHHHHHHHH
Q 036761 174 EPVGIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSKDLQIEKIQEIIGK 229 (897)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 229 (897)
..-.+++|.|++|+|||||++.++....... -..++|+.... ...++...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 3557999999999999999999887663221 12466665432 33444444433
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.62 E-value=0.16 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHhc
Q 036761 175 PVGIVGLYGMGGVGKTTLLTHLHNK 199 (897)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (897)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998775
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.60 E-value=0.17 Score=53.79 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 689999999999999999999876
No 494
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.55 E-value=0.17 Score=47.23 Aligned_cols=25 Identities=40% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 176 VGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.--|+|+|.+|+|||||++.+....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3468999999999999999987654
No 495
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.53 E-value=0.3 Score=54.04 Aligned_cols=44 Identities=14% Similarity=-0.003 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHhc--cCCceEEEEEcCCCCcHHHHHHHHHhccc
Q 036761 158 VGMQSQLDKVWSCLV--EEPVGIVGLYGMGGVGKTTLLTHLHNKFL 201 (897)
Q Consensus 158 vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 201 (897)
+.|.+-.+.+.+... .....+|.+.|+.|+||||+|+.++....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 455444455555442 23557899999999999999999999884
No 496
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=89.48 E-value=0.19 Score=46.37 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998654
No 497
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.47 E-value=0.34 Score=52.41 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=24.5
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 173 EEPVGIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
.....+++|+|+.|+||||+++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3566799999999999999999998765
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.46 E-value=0.18 Score=47.09 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcc
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKF 200 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (897)
..|+|+|.+|+|||||.+.+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998753
No 499
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.46 E-value=0.38 Score=46.66 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccC
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLG 202 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 202 (897)
..|.|.|+.|+||||+++.+.+....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999988753
No 500
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.40 E-value=0.32 Score=49.35 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhcccCCCCCCEEEEEEeCC
Q 036761 177 GIVGLYGMGGVGKTTLLTHLHNKFLGQGDFDFLIWVVVSK 216 (897)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 216 (897)
++|+|.|-||+||||+|..++.....+ -..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CCcEEEEcCCC
Confidence 678889999999999999988877432 23455666543
Done!