BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036764
(476 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 382 MGQPPASRSVVENLTVVVLTQED-VDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +++T++ G C +C E+ G+ A LPC H +H C+
Sbjct: 12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVS 71
Query: 441 PWLRIRNTCPVCRYEMP 457
WL+ TCPVCR P
Sbjct: 72 IWLQKSGTCPVCRCMFP 88
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 401 TQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456
T+E V G+ C VCK+++ +GE ++LPC+H +H CIVPWL ++CPVCR +
Sbjct: 8 TEEHV-GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457
+CAVC ++F ++ PC H +H +C++ WL +R CP+C MP
Sbjct: 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLC--NMP 61
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C GE +RLPC H +H C+ WL CP+CR ++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453
+C VC +F + + LPC+H +H +C+ WL+ TCP+CR
Sbjct: 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICR 67
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 412 CAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIRNTCPVCR 453
CAVC E GE+A+ LP C H +H EC+ WL +TCP+CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 404 DVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458
DV N C +C + F +A L C+H + CI W++ + CP+CR ++ +
Sbjct: 48 DVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 404 DVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458
DV N C +C + F +A L C+H + CI W++ + CP+CR ++ +
Sbjct: 48 DVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 404 DVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458
DV N C +C + F +A L C+H + CI W++ + CP+CR ++ +
Sbjct: 59 DVLENELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 110
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D G LPC+H + +CI W CP+CR +M
Sbjct: 18 CCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQM 58
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453
C +C ++ + LPC H + CI W+R TCP+C+
Sbjct: 8 CPICLED--PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCK 47
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 430 CSHRYHGECIVPWLRIRNTCPV 451
C+H +H CI WL+ R CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 412 CAVCKDEFGVGEKAKRL----PCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D + + RL C H + +C+ L+ NTCP CR ++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 412 CAVCKDEFGVGEKAKRL----PCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D + + RL C H + +C+ L+ NTCP CR ++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 412 CAVCKDEFGVGEKAKRL----PCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D + + RL C H + +C+ L+ NTCP CR ++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 412 CAVCKDEFGVGEKAKRL----PCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D + + RL C H + +C+ L+ NTCP CR ++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.1 bits (74), Expect = 0.35, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 412 CAVCKDEFGVGEKAKRL----PCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C D + + RL C H + +C+ L+ NTCP CR ++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 430 CSHRYHGECIVPWLRIRNTCPVCRYE 455
C+H +H C+ W++ N CP+C+ +
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNT-CPVCRYEM 456
+C +C D K C HR+ +CI+ LR N CP CR ++
Sbjct: 36 MCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKL 80
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNT-CPVCRYEM 456
+C +C D K C HR+ +CI+ LR N CP CR ++
Sbjct: 55 MCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKL 99
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 412 CAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIRNTCPVC 452
C +C + F + A +P CSH Y CI +L + CP C
Sbjct: 25 CGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNT-CPVCRYEM 456
+C +C D K C HR+ +CI+ LR N CP CR ++
Sbjct: 56 MCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKKL 100
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 17/59 (28%)
Query: 412 CAVCKDE-----FGV----GEKA---KRLPCSH----RYHGECIVPWLRIRNTCPVCRY 454
C VC DE +GV G KA + + H +Y G+CI+ +R R CP CRY
Sbjct: 7 CLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIR-RKNCPACRY 64
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 428 LPCSHRYHGECI--VPWLRIRNTCPVCRYEMPTDDID 462
LPC H + C+ WL R C +CR E+P D +D
Sbjct: 31 LPCKHVFCYLCVKGASWLGKR--CALCRQEIPEDFLD 65
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 403 EDVDGNNAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454
E+V N C +C ++ A LPC H H C L+ CP+C +
Sbjct: 1 ENVSQQN--CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMH 51
>pdb|4D8V|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8V|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8X|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P6322 At Ph 4.6
pdb|4D8Y|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|C Chain C, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|D Chain D, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|E Chain E, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|F Chain F, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D98|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D98|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D9H|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4D9H|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4DA0|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2'-Deoxyguanosine
pdb|4DA6|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Ganciclovir
pdb|4DA7|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Aciclovir
pdb|4DA8|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
8-Bromoguanosine
pdb|4DAB|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Hypoxanthine
pdb|4DAE|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
6-Chloroguanosine
pdb|4DAN|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAN|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAO|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAO|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAR|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Tubercidin
Length = 253
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 303 SISLSVSPIIAPEDVVSVERVGGLGNVEWEVLFNANNLETNPEVDHNDDEPYFGDHDDFI 362
SIS+ V+ +I DV ++ RVG G + +V L D + FG DF
Sbjct: 88 SISIYVNELIQSYDVQNLIRVGSCGAIRKDVKVRDVILAMTSSTDSQMNRVAFGS-VDFA 146
Query: 363 HTAEYEML 370
A++E+L
Sbjct: 147 PCADFELL 154
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 412 CAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLRIRNTCPVC 452
C +C ++ A LPC H H C L+ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,839,284
Number of Sequences: 62578
Number of extensions: 510218
Number of successful extensions: 980
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 954
Number of HSP's gapped (non-prelim): 33
length of query: 476
length of database: 14,973,337
effective HSP length: 102
effective length of query: 374
effective length of database: 8,590,381
effective search space: 3212802494
effective search space used: 3212802494
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)