BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036764
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 73/109 (66%)
Query: 360 DFIHTAEYEMLFGQFAENEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEF 419
D+ E L Q AEN+ G PPAS+S +E L +V +T+ +++ CAVC D+F
Sbjct: 172 DYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDF 231
Query: 420 GVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYERRRR 468
G +AK++PC H YH +C++PWL + N+CPVCR+E+PTDD DYERR R
Sbjct: 232 EEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVR 280
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 69/111 (62%)
Query: 356 GDHDDFIHTAEYEMLFGQFAENEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVC 415
G+ D+ E L Q AEN+ G PPAS+S ++ L V +T++ + CAVC
Sbjct: 160 GNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVC 219
Query: 416 KDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYERR 466
DEF G K++PC H +H +C++PWL + N+CPVCR+E+PTDD DYE R
Sbjct: 220 MDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPDYENR 270
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 16/158 (10%)
Query: 322 RVGGLGNVEW-EVLFNA--NNLETNPEVDHNDDEPYFGDHDDFIH-TAEYEMLFGQFAEN 377
R G ++W E+L N++E E D Y G+ D+I A YE L AE
Sbjct: 165 RTGRNRILDWAEILMGIEDNSIEFRMESDR-----YAGNPADYIDDAAGYEALLQNLAEG 219
Query: 378 EMAWMG----QPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHR 433
+ G PPA++S +E L ++ + + +CAVCKD +GE K+LPC H
Sbjct: 220 DGGGGGGRRGAPPAAKSAIEALETFEVSSSEGE-MVMVCAVCKDGMVMGETGKKLPCGHC 278
Query: 434 YHGECIVPWLRIRNTCPVCRYEMPTDDIDY--ERRRRT 469
YHG+CIVPWL RN+CPVCR+++ TDD +Y ER++RT
Sbjct: 279 YHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRT 316
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 95.9 bits (237), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 385 PPASRSVVENLTVVVLTQEDVD--GNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442
PPAS+ VVE L V++ T+E + G A C +CK+ +G+K + LPC H +H C+ PW
Sbjct: 201 PPASKEVVEKLPVIIFTEELLKKFGAEAECCICKENLVIGDKMQELPCKHTFHPPCLKPW 260
Query: 443 LRIRNTCPVCRYEMPTDDIDYE 464
L N+CP+CR+E+PTDD YE
Sbjct: 261 LDEHNSCPICRHELPTDDQKYE 282
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 92.4 bits (228), Expect = 6e-18, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 6/96 (6%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
PPAS+ VVE+L V +T E D C VC EF GE ++LPC H +H CI+PWL
Sbjct: 53 PPASKKVVESLPKVTVTPEQADAALK-CPVCLLEFEEGETVRQLPCEHLFHSACILPWLG 111
Query: 445 IRNTCPVCRYEMPTDDIDY-----ERRRRTERTGRV 475
N+CP+CR+E+PTD DY E+ RR ++ R+
Sbjct: 112 KTNSCPLCRHELPTDSPDYEEFKQEKARRQQKEHRL 147
>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2
SV=2
Length = 156
Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 6/96 (6%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
PPA+++VV++L VV+++ E D C VC EF E + +PC H +H CI+PWL
Sbjct: 53 PPAAKAVVQSLPVVIISPEQAD-KGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLN 111
Query: 445 IRNTCPVCRYEMPTDDIDYE-----RRRRTERTGRV 475
N+CP+CR E+PTD+ DYE + RR +R R+
Sbjct: 112 KTNSCPLCRLELPTDNADYEEFKKDKERRRQREHRL 147
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
PPA++ VVE+L V +T E D C VC EF GE ++LPC H +H CI+PWL
Sbjct: 53 PPAAKKVVESLPKVTVTPEQADAALK-CPVCLLEFEEGETVRQLPCEHLFHSSCILPWLG 111
Query: 445 IRNTCPVCRYEMPTD 459
N+CP+CR+E+PTD
Sbjct: 112 KTNSCPLCRHELPTD 126
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
PPA+++VVE+L V++ D C VC EF E +PC H +H CI+PWL
Sbjct: 64 PPAAKAVVESLPRTVISSAKADLK---CPVCLLEFEAEETVIEMPCHHLFHSNCILPWLS 120
Query: 445 IRNTCPVCRYEMPTDDIDYE-----RRRRTERTGRV 475
N+CP+CR+E+PTDD YE + RR ++ R+
Sbjct: 121 KTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQHRL 156
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 383 GQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442
G PPA + + +L V +TQE V+ C VCK+++ V EK ++LPC+H +H CIVPW
Sbjct: 201 GPPPADKEKITSLPTVTVTQEQVN-TGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPW 259
Query: 443 LRIRNTCPVCRYEMPTDD 460
L + +TCPVCR + +D
Sbjct: 260 LELHDTCPVCRKSLNGED 277
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 383 GQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442
G PPA + + +L V +TQE VD C VCK+++ V E+ ++LPC+H +H CIVPW
Sbjct: 200 GPPPADKEKITSLPTVTVTQEQVD-MGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPW 258
Query: 443 LRIRNTCPVCRYEMPTDD 460
L + +TCPVCR + +D
Sbjct: 259 LELHDTCPVCRKSLNGED 276
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA + ++ L V +T+E V G+ C VCKD++G+GE ++LPC+H +H
Sbjct: 198 NQFENTGPPPADKEKIQALPTVPVTEEHV-GSGLECPVCKDDYGLGEHVRQLPCNHLFHD 256
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
CIVPWL ++CPVCR +
Sbjct: 257 GCIVPWLEQHDSCPVCRKSL 276
>sp|Q9P0P0|RN181_HUMAN E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1
SV=1
Length = 153
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 55/86 (63%), Gaps = 7/86 (8%)
Query: 385 PPASRSVVENL--TVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442
PPA+++VVENL TV+ +Q ++ C VC EF E A +PC H +H CI+PW
Sbjct: 52 PPAAKTVVENLPRTVIRGSQAELK-----CPVCLLEFEEEETAIEMPCHHLFHSSCILPW 106
Query: 443 LRIRNTCPVCRYEMPTDDIDYERRRR 468
L N+CP+CRYE+PTDD YE RR
Sbjct: 107 LSKTNSCPLCRYELPTDDDTYEEHRR 132
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA + ++ L V +T+E V G+ C VCKD++ +GE+ ++LPC+H +H
Sbjct: 195 NQFENTGPPPADKEKIQALPTVPVTEEHV-GSGLECPVCKDDYALGERVRQLPCNHLFHD 253
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
CIVPWL ++CPVCR +
Sbjct: 254 GCIVPWLEQHDSCPVCRKSL 273
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA ++ L + +T+E V G+ C VCK+++ VGE ++LPC+H +H
Sbjct: 193 NQFENTGPPPADTEKIQALPTIQITEEHV-GSGLECPVCKEDYTVGESVRQLPCNHLFHN 251
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
+CI+PWL +TCPVCR +
Sbjct: 252 DCIIPWLEQHDTCPVCRKSL 271
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA + ++ L V +T+E V G+ C VCK+++ +GE ++LPC+H +H
Sbjct: 197 NQFENTGPPPADKEKIQALPTVPVTEEHV-GSGLECPVCKEDYALGESVRQLPCNHLFHD 255
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
CIVPWL ++CPVCR +
Sbjct: 256 SCIVPWLEQHDSCPVCRKSL 275
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
P AS+ + L V + + D +G + C+VCK+ G+K + LPC H +H ECI+ WL+
Sbjct: 44 PEASKRAILELPVHEIVKSD-EGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLK 102
Query: 445 IRNTCPVCRYEMPTDDIDYERRRR 468
N+CP+CRYE+ TDD YE RR
Sbjct: 103 KTNSCPLCRYELETDDPVYEELRR 126
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA ++ L + +T+E V G+ C VCK+++ VGE ++LPC+H +H
Sbjct: 194 NQFENTGPPPADNEKIQALPTIQITEEHV-GSGLECPVCKEDYTVGECVRQLPCNHLFHN 252
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
+CI+PWL +TCPVCR +
Sbjct: 253 DCIIPWLEQHDTCPVCRKSL 272
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 377 NEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436
N+ G PPA ++ L + +T+E V G C VCK+++ VGE ++LPC+H +H
Sbjct: 194 NQFENTGPPPADTDKIQALPTIQITEEHV-GFGLECPVCKEDYTVGESVRQLPCNHLFHN 252
Query: 437 ECIVPWLRIRNTCPVCRYEM 456
+CI+PWL +TCPVCR +
Sbjct: 253 DCIIPWLEQHDTCPVCRKSL 272
>sp|Q3T0W3|RN181_BOVIN E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2
SV=1
Length = 153
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 7/86 (8%)
Query: 385 PPASRSVVENL--TVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442
PPA+++ VENL TV+ +Q ++ C VC EF E A +PC H +H CI+PW
Sbjct: 52 PPAAKTAVENLPRTVIRGSQAELK-----CPVCLLEFEEEETAIEMPCHHLFHSNCILPW 106
Query: 443 LRIRNTCPVCRYEMPTDDIDYERRRR 468
L N+CP+CR+E+PTDD YE +R
Sbjct: 107 LSKTNSCPLCRHELPTDDDTYEEHKR 132
>sp|Q6AXU4|RN181_RAT E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181
PE=1 SV=1
Length = 165
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 385 PPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444
PPA+++VVE+L V+ + C VC EF E +PC H +H CI+PWL
Sbjct: 64 PPAAKAVVESLPRTVIRSSKAELK---CPVCLLEFEEEETVIEMPCHHLFHSNCILPWLS 120
Query: 445 IRNTCPVCRYEMPTDDIDYE-----RRRRTERTGRV 475
N+CP+CR+E+PTDD YE + RR ++ R+
Sbjct: 121 KTNSCPLCRHELPTDDDSYEEHKKDKARRQQQQHRL 156
>sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja-1 OS=Homo sapiens GN=PJA1 PE=1
SV=2
Length = 643
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 382 MGQPPASRSVVENLTVVVLTQE-DVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +++T++ G C +C E+ GE A LPC H +H C+
Sbjct: 564 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVS 623
Query: 441 PWLRIRNTCPVCRYEMP 457
WL+ TCPVCR P
Sbjct: 624 IWLQKSGTCPVCRCMFP 640
>sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus GN=Pja1 PE=1
SV=3
Length = 578
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 382 MGQPPASRSVVENLTVVVLTQE-DVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +++T++ G C +C E+ GE A LPC H +H C+
Sbjct: 499 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGEVATELPCHHYFHKPCVS 558
Query: 441 PWLRIRNTCPVCRYEMP 457
WL+ TCPVCR P
Sbjct: 559 IWLQKSGTCPVCRCMFP 575
>sp|Q20798|HRD1_CAEEL E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans
GN=sel-11 PE=3 SV=1
Length = 610
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 399 VLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453
V++ ED+ +A C +C++E V KRLPCSH +H C+ W + + TCP CR
Sbjct: 279 VVSAEDLAAMDATCIICREEMTVDASPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C DE+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C DE+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C DE+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C DE+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454
C+VC ++ VGE + LPC H++H CI PWLR + TCPVC++
Sbjct: 211 CSVCLEQVTVGEIVRTLPCLHQFHAGCIDPWLRQQGTCPVCKF 253
>sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja-2 OS=Mus musculus GN=Pja2 PE=1
SV=2
Length = 707
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 382 MGQPPASRSVVENLT-VVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +VL G C +C E+ + A LPC H +H C+
Sbjct: 602 VANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVS 661
Query: 441 PWLRIRNTCPVCRYEMPTDDID 462
WL+ TCPVCR P ID
Sbjct: 662 IWLQKSGTCPVCRRHFPPAVID 683
>sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja-2 OS=Rattus norvegicus GN=Pja2
PE=2 SV=1
Length = 707
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 382 MGQPPASRSVVENLT-VVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +VL G C +C E+ + A LPC H +H C+
Sbjct: 602 VANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVS 661
Query: 441 PWLRIRNTCPVCRYEMPTDDID 462
WL+ TCPVCR P ID
Sbjct: 662 IWLQKSGTCPVCRRHFPPAVID 683
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C +E+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456
+CA+C +E+ G+K + LPCSH YH +C+ PWL + + TCPVC+ ++
Sbjct: 239 VCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja-2 OS=Homo sapiens GN=PJA2 PE=1
SV=4
Length = 708
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 382 MGQPPASRSVVENLT-VVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +VL G C +C E+ + A LPC H +H C+
Sbjct: 603 VANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVS 662
Query: 441 PWLRIRNTCPVCRYEMP 457
WL+ TCPVCR P
Sbjct: 663 IWLQKSGTCPVCRRHFP 679
>sp|A8Y4B2|HRD1_CAEBR E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae
GN=sel-11 PE=3 SV=2
Length = 622
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 399 VLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453
V++ +++ +A C +C++E V KRLPCSH +H C+ W + + TCP CR
Sbjct: 279 VVSNDELSAMDATCIICREEMTVESSPKRLPCSHVFHAHCLRSWFQRQQTCPTCR 333
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 370 LFGQFAENEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLP 429
+ Q E PA V+ + V +E +D C +C + F + + +LP
Sbjct: 355 IISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELID-EEGECTICMEMFKINDDVIQLP 413
Query: 430 CSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYERRRRT 469
C H +H CI PWLR+ TC +CR + D + ++R T
Sbjct: 414 CKHYFHENCIKPWLRVNGTCAICRAPV---DPNSQQRNNT 450
>sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja-2 OS=Pongo abelii GN=PJA2 PE=2
SV=1
Length = 708
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 382 MGQPPASRSVVENLT-VVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440
+ PPAS+ ++ L +VL G C +C E+ + A LPC H +H C+
Sbjct: 603 VANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIKDDIATELPCHHFFHKPCVS 662
Query: 441 PWLRIRNTCPVCRYEMP 457
WL+ TCPVCR P
Sbjct: 663 IWLQKSGTCPVCRRHFP 679
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 400 LTQEDVDG--------NNAI--CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTC 449
LT+E +D N+A+ C+VC E+ G K ++LPCSH YH CI WL +TC
Sbjct: 524 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTC 583
Query: 450 PVCR 453
P+CR
Sbjct: 584 PICR 587
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 400 LTQEDVDG--------NNAI--CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTC 449
LT+E +D N+A+ C+VC E+ G K ++LPCSH YH CI WL +TC
Sbjct: 548 LTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTC 607
Query: 450 PVCR 453
P+CR
Sbjct: 608 PICR 611
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 400 LTQEDVDG--------NNAI--CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTC 449
LT+E +D N+A+ C+VC E+ G K ++LPCSH YH CI WL +TC
Sbjct: 546 LTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTC 605
Query: 450 PVCR 453
P+CR
Sbjct: 606 PICR 609
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 400 LTQEDVDG--------NNAI--CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTC 449
LT+E +D N+A+ C+VC E+ G K ++LPCSH YH CI WL +TC
Sbjct: 681 LTKEQIDNLSTRNYGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTC 740
Query: 450 PVCR 453
P+CR
Sbjct: 741 PICR 744
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 400 LTQEDVDG--------NNAI--CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTC 449
LT+E +D N+A+ C+VC E+ G K ++LPCSH YH CI WL +TC
Sbjct: 563 LTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTC 622
Query: 450 PVCR 453
P+CR
Sbjct: 623 PICR 626
>sp|Q803I8|SYVN1_DANRE E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2
SV=2
Length = 625
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 388 SRSVVENLTVVV--LTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445
SR + N+ + T ED+ + +C +C++E G AK+LPC+H +H C+ W +
Sbjct: 265 SRRAIRNMNTLYPDATPEDLQATDNVCIICREEMVTG--AKKLPCNHIFHSSCLRSWFQR 322
Query: 446 RNTCPVCR 453
+ TCP CR
Sbjct: 323 QQTCPTCR 330
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCR 453
+CA+C DE+ G+K + LPC+H YH C+ PWL + R TCP+C+
Sbjct: 229 VCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCR 453
+CA+C DE+ G+K + LPC+H YH C+ PWL + R TCP+C+
Sbjct: 229 VCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL-RIRNTCPVCR 453
+CA+C DE+ G+K + LPC+H YH C+ PWL + R TCP+C+
Sbjct: 229 VCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICK 272
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456
C +C+ ++ +GE+ LPC H YH ECI WL I CPVC E+
Sbjct: 197 CVICQLKYKIGERQMNLPCKHVYHSECISKWLSINKVCPVCNSEV 241
>sp|Q6NRL6|SYVNA_XENLA E3 ubiquitin-protein ligase synoviolin A OS=Xenopus laevis
GN=syvn1-a PE=2 SV=1
Length = 605
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 388 SRSVVENLTVVV--LTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445
SR + N+ + T E++ + +C +C++E G AKRLPC+H +H C+ W +
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVTG--AKRLPCNHIFHTSCLRSWFQR 316
Query: 446 RNTCPVCRYEMPTDDIDYERRRRTE 470
+ TCP CR ++ + + + TE
Sbjct: 317 QQTCPTCRMDVLRASLPTQPQTPTE 341
>sp|Q86TM6|SYVN1_HUMAN E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1
PE=1 SV=2
Length = 617
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 388 SRSVVENLTVVV--LTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445
SR + N+ + T E++ + +C +C++E G AKRLPC+H +H C+ W +
Sbjct: 265 SRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVTG--AKRLPCNHIFHTSCLRSWFQR 322
Query: 446 RNTCPVCR 453
+ TCP CR
Sbjct: 323 QQTCPTCR 330
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 406 DGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458
+G N C +C+ ++ E LPC H YH ECI WL+I CPVC E+ T
Sbjct: 282 NGTNESCVICRLDYEDDEDLILLPCKHSYHSECINNWLKINKVCPVCSAEVST 334
>sp|Q5XHH7|SYVNB_XENLA E3 ubiquitin-protein ligase synoviolin B OS=Xenopus laevis
GN=syvn1-b PE=2 SV=1
Length = 595
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 388 SRSVVENLTVVV--LTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445
SR + N+ + T E++ + +C +C++E G AKRLPC+H +H C+ W +
Sbjct: 259 SRRAIRNMNTLYPDATAEELQAMDNVCIICREEMVSG--AKRLPCNHIFHTSCLRSWFQR 316
Query: 446 RNTCPVCR 453
+ TCP CR
Sbjct: 317 QQTCPTCR 324
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,653,902
Number of Sequences: 539616
Number of extensions: 9880194
Number of successful extensions: 95426
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 29087
Number of HSP's gapped (non-prelim): 27176
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)