Query 036764
Match_columns 476
No_of_seqs 197 out of 1594
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:16:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 2E-14 4.3E-19 147.1 4.6 78 383-460 203-281 (348)
2 PF13639 zf-RING_2: Ring finge 99.3 2.8E-13 6E-18 99.3 1.7 43 411-453 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.2 2.3E-11 5.1E-16 119.4 4.5 72 387-458 150-228 (238)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 7.5E-11 1.6E-15 96.2 4.4 45 409-453 19-73 (73)
5 COG5540 RING-finger-containing 99.1 4.1E-11 8.9E-16 120.9 3.3 50 409-458 323-373 (374)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 3.7E-11 7.9E-16 123.8 2.6 71 387-459 267-347 (491)
7 KOG0317 Predicted E3 ubiquitin 98.9 8E-10 1.7E-14 110.8 3.6 52 408-462 238-289 (293)
8 cd00162 RING RING-finger (Real 98.8 4.2E-09 9.1E-14 74.0 3.4 44 411-456 1-45 (45)
9 PLN03208 E3 ubiquitin-protein 98.8 1.9E-09 4.1E-14 103.2 1.9 57 408-467 17-89 (193)
10 PF13920 zf-C3HC4_3: Zinc fing 98.8 4.1E-09 8.9E-14 79.3 3.2 46 409-457 2-48 (50)
11 KOG0823 Predicted E3 ubiquitin 98.8 2E-09 4.3E-14 105.2 1.1 53 408-463 46-101 (230)
12 KOG0802 E3 ubiquitin ligase [P 98.7 3.2E-09 6.9E-14 114.2 0.8 49 408-456 290-340 (543)
13 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.3E-08 2.8E-13 73.2 2.9 39 412-452 1-39 (39)
14 smart00504 Ubox Modified RING 98.7 1.7E-08 3.7E-13 77.8 3.7 49 410-461 2-50 (63)
15 PHA02926 zinc finger-like prot 98.6 2.6E-08 5.7E-13 97.4 2.8 52 407-458 168-231 (242)
16 KOG0320 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 94.7 2.0 50 410-460 132-181 (187)
17 PF12861 zf-Apc11: Anaphase-pr 98.5 4.2E-08 9E-13 83.3 2.9 50 409-458 21-83 (85)
18 PF14634 zf-RING_5: zinc-RING 98.5 6.8E-08 1.5E-12 71.4 3.0 44 411-454 1-44 (44)
19 PF15227 zf-C3HC4_4: zinc fing 98.5 9.7E-08 2.1E-12 70.6 3.3 38 412-452 1-42 (42)
20 smart00184 RING Ring finger. E 98.5 1E-07 2.2E-12 64.6 3.1 38 412-452 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.4 1.2E-07 2.6E-12 99.5 2.9 48 409-459 26-73 (397)
22 PF00097 zf-C3HC4: Zinc finger 98.4 2.1E-07 4.5E-12 66.8 3.0 39 412-452 1-41 (41)
23 KOG2164 Predicted E3 ubiquitin 98.2 4.4E-07 9.6E-12 97.0 2.1 50 409-461 186-240 (513)
24 COG5219 Uncharacterized conser 98.2 2E-07 4.3E-12 104.9 -0.8 69 390-458 1450-1524(1525)
25 KOG0287 Postreplication repair 98.2 5.6E-07 1.2E-11 92.6 2.2 52 409-463 23-74 (442)
26 COG5194 APC11 Component of SCF 98.2 1.3E-06 2.8E-11 73.9 2.9 49 410-458 21-82 (88)
27 COG5574 PEX10 RING-finger-cont 98.1 8.6E-07 1.9E-11 88.5 2.0 50 409-461 215-266 (271)
28 PF04564 U-box: U-box domain; 98.1 1.3E-06 2.9E-11 71.0 2.6 52 409-463 4-56 (73)
29 KOG2177 Predicted E3 ubiquitin 98.1 1.1E-06 2.5E-11 80.3 1.7 44 408-454 12-55 (386)
30 TIGR00570 cdk7 CDK-activating 98.1 3.8E-06 8.2E-11 85.8 4.9 63 409-471 3-76 (309)
31 KOG0828 Predicted E3 ubiquitin 98.1 1.2E-06 2.6E-11 93.5 1.3 50 409-458 571-635 (636)
32 PF13445 zf-RING_UBOX: RING-ty 98.0 4.4E-06 9.5E-11 62.6 2.6 38 412-450 1-43 (43)
33 COG5432 RAD18 RING-finger-cont 98.0 3.7E-06 8E-11 85.4 2.5 46 409-457 25-70 (391)
34 KOG1734 Predicted RING-contain 97.9 2.3E-06 5E-11 86.0 0.6 50 408-457 223-281 (328)
35 KOG2930 SCF ubiquitin ligase, 97.9 4.8E-06 1E-10 73.4 2.3 48 409-456 46-107 (114)
36 KOG1493 Anaphase-promoting com 97.9 2.4E-06 5.2E-11 71.8 0.1 49 409-457 20-81 (84)
37 smart00744 RINGv The RING-vari 97.9 8E-06 1.7E-10 62.4 2.9 42 411-453 1-49 (49)
38 KOG0804 Cytoplasmic Zn-finger 97.8 7.5E-06 1.6E-10 86.8 1.7 48 408-457 174-222 (493)
39 PF11793 FANCL_C: FANCL C-term 97.7 6.5E-06 1.4E-10 67.0 -0.5 49 409-457 2-66 (70)
40 KOG0311 Predicted E3 ubiquitin 97.6 1.1E-05 2.3E-10 83.6 -1.4 47 409-458 43-91 (381)
41 KOG1039 Predicted E3 ubiquitin 97.4 6.5E-05 1.4E-09 77.9 2.0 49 409-457 161-221 (344)
42 KOG0827 Predicted E3 ubiquitin 97.4 6.8E-05 1.5E-09 78.6 1.6 50 410-459 5-58 (465)
43 KOG0825 PHD Zn-finger protein 97.4 4.3E-05 9.2E-10 85.5 -0.1 49 410-458 124-172 (1134)
44 PF14835 zf-RING_6: zf-RING of 97.3 6.5E-05 1.4E-09 61.2 0.8 52 410-465 8-59 (65)
45 KOG4265 Predicted E3 ubiquitin 97.3 0.00011 2.3E-09 76.2 2.6 47 409-458 290-337 (349)
46 KOG0824 Predicted E3 ubiquitin 97.3 8.5E-05 1.8E-09 75.8 1.7 49 409-460 7-56 (324)
47 KOG1645 RING-finger-containing 97.2 0.00019 4.2E-09 75.7 2.8 61 410-470 5-69 (463)
48 KOG4159 Predicted E3 ubiquitin 97.1 0.00027 5.9E-09 74.6 2.3 49 407-458 82-130 (398)
49 KOG0978 E3 ubiquitin ligase in 96.9 0.00026 5.6E-09 79.1 0.3 50 409-461 643-693 (698)
50 KOG1785 Tyrosine kinase negati 96.9 0.00034 7.4E-09 73.9 1.1 49 407-458 367-417 (563)
51 KOG4445 Uncharacterized conser 96.8 0.00067 1.5E-08 69.5 2.3 91 364-458 74-187 (368)
52 KOG1002 Nucleotide excision re 96.7 0.00093 2E-08 72.7 2.6 57 408-467 535-596 (791)
53 KOG0297 TNF receptor-associate 96.6 0.001 2.2E-08 69.8 2.2 49 409-459 21-69 (391)
54 KOG1941 Acetylcholine receptor 96.6 0.00068 1.5E-08 71.5 0.9 46 409-454 365-413 (518)
55 KOG4172 Predicted E3 ubiquitin 96.5 0.00051 1.1E-08 54.8 -0.8 46 409-457 7-54 (62)
56 PF11789 zf-Nse: Zinc-finger o 96.4 0.0018 3.9E-08 51.2 1.8 41 409-451 11-53 (57)
57 KOG3970 Predicted E3 ubiquitin 96.2 0.0038 8.3E-08 62.1 3.6 48 410-458 51-106 (299)
58 KOG2660 Locus-specific chromos 96.1 0.0014 3E-08 67.7 -0.4 45 409-456 15-60 (331)
59 KOG0801 Predicted E3 ubiquitin 96.0 0.002 4.4E-08 61.3 0.2 41 396-436 164-204 (205)
60 KOG1428 Inhibitor of type V ad 95.9 0.0044 9.6E-08 73.5 2.4 72 387-458 3463-3545(3738)
61 COG5152 Uncharacterized conser 95.7 0.0034 7.4E-08 61.5 0.7 44 410-456 197-240 (259)
62 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.022 4.8E-07 56.6 6.2 102 353-459 47-163 (260)
63 PF12906 RINGv: RING-variant d 95.4 0.014 3E-07 44.4 2.7 40 412-452 1-47 (47)
64 KOG2879 Predicted E3 ubiquitin 95.3 0.012 2.7E-07 59.8 3.1 49 408-458 238-288 (298)
65 KOG4692 Predicted E3 ubiquitin 95.2 0.0082 1.8E-07 63.0 1.3 50 407-459 420-469 (489)
66 PF05883 Baculo_RING: Baculovi 95.1 0.013 2.9E-07 53.9 2.2 42 409-450 26-73 (134)
67 KOG0827 Predicted E3 ubiquitin 95.0 0.0023 5E-08 67.5 -3.4 56 409-464 196-252 (465)
68 PHA02862 5L protein; Provision 94.8 0.017 3.6E-07 54.2 2.2 45 410-458 3-54 (156)
69 PHA02825 LAP/PHD finger-like p 94.7 0.024 5.1E-07 53.7 2.9 47 408-458 7-60 (162)
70 PHA03096 p28-like protein; Pro 94.7 0.014 3.1E-07 59.4 1.6 45 410-454 179-231 (284)
71 PF10367 Vps39_2: Vacuolar sor 94.7 0.013 2.8E-07 49.1 1.0 31 409-440 78-108 (109)
72 KOG4185 Predicted E3 ubiquitin 94.6 0.03 6.4E-07 55.8 3.5 48 410-457 4-55 (296)
73 KOG1813 Predicted E3 ubiquitin 94.5 0.012 2.7E-07 60.3 0.5 44 411-457 243-286 (313)
74 KOG3039 Uncharacterized conser 94.3 0.038 8.2E-07 55.8 3.3 73 392-464 195-277 (303)
75 KOG1571 Predicted E3 ubiquitin 94.1 0.018 3.8E-07 60.3 0.7 43 409-457 305-347 (355)
76 KOG1952 Transcription factor N 93.7 0.028 6.1E-07 64.2 1.5 49 408-456 190-246 (950)
77 KOG1814 Predicted E3 ubiquitin 93.6 0.032 6.9E-07 59.5 1.5 37 409-445 184-220 (445)
78 PF10272 Tmpp129: Putative tra 93.5 0.056 1.2E-06 56.9 3.1 32 430-461 311-355 (358)
79 COG5236 Uncharacterized conser 93.4 0.055 1.2E-06 57.0 2.8 48 406-456 58-107 (493)
80 COG5222 Uncharacterized conser 93.4 0.073 1.6E-06 55.1 3.6 42 410-454 275-318 (427)
81 KOG4275 Predicted E3 ubiquitin 93.4 0.017 3.8E-07 59.3 -0.8 41 409-456 300-341 (350)
82 KOG4739 Uncharacterized protei 93.4 0.029 6.3E-07 55.9 0.8 46 411-459 5-50 (233)
83 PF08746 zf-RING-like: RING-li 93.2 0.032 6.9E-07 41.8 0.5 41 412-452 1-43 (43)
84 COG5175 MOT2 Transcriptional r 92.8 0.044 9.5E-07 57.5 1.1 53 409-461 14-68 (480)
85 KOG3002 Zn finger protein [Gen 92.7 0.089 1.9E-06 54.1 3.2 52 409-468 48-101 (299)
86 PF14570 zf-RING_4: RING/Ubox 92.7 0.066 1.4E-06 41.6 1.7 43 412-455 1-46 (48)
87 KOG2114 Vacuolar assembly/sort 92.4 0.033 7E-07 63.7 -0.4 44 410-458 841-884 (933)
88 PF14447 Prok-RING_4: Prokaryo 91.2 0.12 2.5E-06 41.3 1.5 46 411-461 9-54 (55)
89 KOG0826 Predicted E3 ubiquitin 90.9 0.24 5.2E-06 51.8 3.9 49 408-458 299-347 (357)
90 KOG3268 Predicted E3 ubiquitin 90.7 0.14 2.9E-06 49.9 1.8 48 411-458 167-229 (234)
91 KOG1940 Zn-finger protein [Gen 90.4 0.14 3.1E-06 52.2 1.7 44 411-454 160-204 (276)
92 KOG2034 Vacuolar sorting prote 90.3 0.2 4.2E-06 57.9 2.9 35 409-444 817-851 (911)
93 KOG1001 Helicase-like transcri 90.0 0.11 2.3E-06 58.8 0.5 44 410-457 455-500 (674)
94 KOG2932 E3 ubiquitin ligase in 90.0 0.16 3.5E-06 52.8 1.8 43 410-456 91-133 (389)
95 KOG2817 Predicted E3 ubiquitin 89.5 0.26 5.7E-06 52.4 2.9 45 409-453 334-381 (394)
96 PF07800 DUF1644: Protein of u 89.1 0.39 8.5E-06 45.7 3.5 60 409-471 2-105 (162)
97 PF03854 zf-P11: P-11 zinc fin 87.1 0.2 4.3E-06 39.2 0.1 43 412-459 5-48 (50)
98 KOG0298 DEAD box-containing he 86.4 0.35 7.7E-06 57.8 1.7 43 410-454 1154-1196(1394)
99 KOG0309 Conserved WD40 repeat- 86.2 0.35 7.6E-06 55.3 1.5 39 412-451 1031-1069(1081)
100 KOG1609 Protein involved in mR 85.8 0.19 4E-06 49.6 -0.8 51 409-459 78-136 (323)
101 COG5183 SSM4 Protein involved 84.9 0.41 8.8E-06 55.1 1.2 53 408-461 11-70 (1175)
102 KOG3800 Predicted E3 ubiquitin 83.7 1.1 2.4E-05 46.3 3.6 46 411-456 2-50 (300)
103 KOG4718 Non-SMC (structural ma 83.4 0.62 1.3E-05 46.3 1.6 42 410-453 182-223 (235)
104 KOG3053 Uncharacterized conser 83.3 0.41 9E-06 48.7 0.4 49 409-457 20-82 (293)
105 PF05290 Baculo_IE-1: Baculovi 82.6 0.62 1.3E-05 43.4 1.3 52 409-460 80-135 (140)
106 KOG3161 Predicted E3 ubiquitin 82.5 0.44 9.5E-06 53.7 0.3 42 410-454 12-54 (861)
107 KOG3899 Uncharacterized conser 82.1 0.43 9.3E-06 49.5 0.0 32 430-461 325-369 (381)
108 PF14446 Prok-RING_1: Prokaryo 80.9 1.5 3.2E-05 35.1 2.6 43 409-455 5-50 (54)
109 KOG0802 E3 ubiquitin ligase [P 80.2 0.73 1.6E-05 50.5 1.0 45 408-459 478-522 (543)
110 KOG1812 Predicted E3 ubiquitin 76.1 1.5 3.3E-05 46.4 1.9 52 409-460 146-206 (384)
111 KOG1100 Predicted E3 ubiquitin 75.9 1.4 3E-05 43.2 1.4 39 412-457 161-200 (207)
112 KOG4362 Transcriptional regula 74.9 0.67 1.5E-05 52.5 -1.2 47 409-458 21-70 (684)
113 COG5220 TFB3 Cdk activating ki 73.3 1.6 3.4E-05 44.4 1.1 46 408-453 9-60 (314)
114 KOG1829 Uncharacterized conser 71.1 1.4 3E-05 49.4 0.1 40 410-452 512-556 (580)
115 KOG0269 WD40 repeat-containing 71.1 2.5 5.5E-05 48.5 2.2 43 411-454 781-825 (839)
116 KOG4367 Predicted Zn-finger pr 70.0 2.3 5.1E-05 46.4 1.5 35 408-445 3-37 (699)
117 KOG3005 GIY-YIG type nuclease 67.7 3.2 6.8E-05 42.6 1.8 47 410-456 183-242 (276)
118 KOG0825 PHD Zn-finger protein 67.3 2.3 5.1E-05 49.2 0.9 49 409-457 96-154 (1134)
119 PF02891 zf-MIZ: MIZ/SP-RING z 64.5 6.7 0.00015 30.2 2.7 43 410-455 3-50 (50)
120 KOG2066 Vacuolar assembly/sort 62.0 4.3 9.4E-05 46.9 1.7 48 410-458 785-836 (846)
121 PF13901 DUF4206: Domain of un 61.5 4.8 0.0001 39.0 1.7 40 409-453 152-196 (202)
122 COG5109 Uncharacterized conser 60.3 5.8 0.00012 41.9 2.1 44 409-452 336-382 (396)
123 KOG2068 MOT2 transcription fac 60.0 5.4 0.00012 41.9 1.9 50 410-459 250-300 (327)
124 KOG1812 Predicted E3 ubiquitin 59.7 4.3 9.4E-05 43.1 1.2 43 410-452 307-351 (384)
125 KOG3842 Adaptor protein Pellin 57.8 8.3 0.00018 40.8 2.8 51 409-459 341-416 (429)
126 PF04216 FdhE: Protein involve 57.0 1.4 3.1E-05 44.3 -2.7 45 410-454 173-219 (290)
127 KOG3579 Predicted E3 ubiquitin 55.7 8 0.00017 40.3 2.2 53 408-461 267-332 (352)
128 KOG3113 Uncharacterized conser 53.9 18 0.00039 37.3 4.3 50 409-460 111-161 (293)
129 COG4068 Uncharacterized protei 52.7 14 0.0003 30.4 2.7 16 445-460 7-22 (64)
130 smart00249 PHD PHD zinc finger 50.6 8.6 0.00019 26.8 1.1 31 411-441 1-31 (47)
131 KOG1815 Predicted E3 ubiquitin 48.6 8.7 0.00019 41.3 1.3 35 409-445 70-104 (444)
132 smart00132 LIM Zinc-binding do 46.6 21 0.00046 24.1 2.6 38 411-457 1-38 (39)
133 PF00628 PHD: PHD-finger; Int 46.0 12 0.00027 27.7 1.4 43 411-453 1-49 (51)
134 KOG4185 Predicted E3 ubiquitin 45.0 4.8 0.00011 40.2 -1.2 46 410-455 208-265 (296)
135 KOG2807 RNA polymerase II tran 44.3 17 0.00036 38.7 2.5 47 409-455 330-376 (378)
136 PF09889 DUF2116: Uncharacteri 43.7 16 0.00036 29.5 1.9 15 445-459 2-16 (59)
137 KOG3039 Uncharacterized conser 43.4 6.1 0.00013 40.5 -0.8 50 409-467 43-92 (303)
138 PF04710 Pellino: Pellino; In 41.9 8.5 0.00019 41.6 0.0 50 409-458 328-402 (416)
139 KOG4443 Putative transcription 38.9 16 0.00035 41.7 1.6 47 409-456 18-72 (694)
140 KOG4451 Uncharacterized conser 38.7 13 0.00028 37.8 0.7 35 434-468 251-285 (286)
141 PLN02638 cellulose synthase A 37.0 30 0.00064 41.7 3.3 47 410-456 18-69 (1079)
142 PLN02195 cellulose synthase A 35.7 41 0.00089 40.2 4.2 58 408-465 5-71 (977)
143 PLN02189 cellulose synthase 34.6 33 0.00073 41.2 3.2 47 410-456 35-86 (1040)
144 PLN02400 cellulose synthase 34.5 25 0.00054 42.4 2.2 47 410-456 37-88 (1085)
145 TIGR01562 FdhE formate dehydro 34.0 10 0.00023 39.4 -0.8 44 410-454 185-232 (305)
146 PF06906 DUF1272: Protein of u 33.6 55 0.0012 26.6 3.3 47 411-459 7-54 (57)
147 KOG1245 Chromatin remodeling c 33.5 14 0.00031 45.5 0.1 48 409-456 1108-1159(1404)
148 PF01363 FYVE: FYVE zinc finge 33.1 25 0.00055 27.7 1.4 35 409-443 9-44 (69)
149 PF00412 LIM: LIM domain; Int 33.0 33 0.00071 25.6 2.0 40 412-460 1-40 (58)
150 PRK03564 formate dehydrogenase 32.3 13 0.00029 38.7 -0.3 44 409-454 187-234 (309)
151 PLN02436 cellulose synthase A 31.8 40 0.00086 40.7 3.2 47 410-456 37-88 (1094)
152 PF07975 C1_4: TFIIH C1-like d 31.6 36 0.00078 26.9 2.0 42 412-453 2-50 (51)
153 PF10146 zf-C4H2: Zinc finger- 31.5 21 0.00046 35.7 0.9 31 436-466 198-228 (230)
154 PF13832 zf-HC5HC2H_2: PHD-zin 30.8 23 0.00051 30.3 0.9 31 409-441 55-87 (110)
155 PF06750 DiS_P_DiS: Bacterial 30.3 40 0.00087 29.1 2.3 44 409-464 33-76 (92)
156 PF14569 zf-UDP: Zinc-binding 29.1 35 0.00076 29.4 1.7 46 409-454 9-59 (80)
157 KOG1729 FYVE finger containing 28.3 16 0.00035 37.8 -0.6 37 410-446 215-251 (288)
158 PF04423 Rad50_zn_hook: Rad50 27.5 18 0.00038 27.9 -0.4 14 448-461 22-35 (54)
159 PF10497 zf-4CXXC_R1: Zinc-fin 27.2 57 0.0012 28.9 2.7 44 410-454 8-69 (105)
160 PF10571 UPF0547: Uncharacteri 25.5 37 0.0008 23.2 1.0 12 447-458 1-12 (26)
161 KOG4218 Nuclear hormone recept 25.4 26 0.00056 37.7 0.3 46 409-455 15-76 (475)
162 PF04710 Pellino: Pellino; In 25.4 23 0.00051 38.3 0.0 32 424-458 303-340 (416)
163 KOG1815 Predicted E3 ubiquitin 25.4 28 0.00061 37.4 0.6 35 411-445 228-267 (444)
164 PF07191 zinc-ribbons_6: zinc- 25.4 7.5 0.00016 32.6 -2.9 40 410-457 2-41 (70)
165 cd00065 FYVE FYVE domain; Zinc 25.4 42 0.00092 25.3 1.4 35 410-444 3-38 (57)
166 KOG0957 PHD finger protein [Ge 24.5 30 0.00066 38.7 0.6 46 409-454 544-597 (707)
167 PRK11088 rrmA 23S rRNA methylt 23.7 46 0.00099 32.9 1.7 25 410-434 3-27 (272)
168 PF06844 DUF1244: Protein of u 23.4 42 0.00091 28.2 1.1 13 433-445 11-23 (68)
169 TIGR00622 ssl1 transcription f 22.4 1E+02 0.0023 28.0 3.5 45 410-454 56-111 (112)
170 KOG2231 Predicted E3 ubiquitin 21.7 52 0.0011 37.9 1.8 45 411-458 2-53 (669)
171 PLN02915 cellulose synthase A 21.6 82 0.0018 38.1 3.4 48 409-456 15-67 (1044)
172 PF13771 zf-HC5HC2H: PHD-like 21.2 43 0.00093 27.5 0.8 33 409-441 36-68 (90)
173 KOG2169 Zn-finger transcriptio 21.1 69 0.0015 36.5 2.6 49 410-462 307-361 (636)
174 KOG3799 Rab3 effector RIM1 and 21.0 27 0.00059 33.1 -0.5 48 408-455 64-116 (169)
175 KOG4323 Polycomb-like PHD Zn-f 20.9 28 0.00061 38.3 -0.5 45 409-454 168-223 (464)
176 cd00350 rubredoxin_like Rubred 20.6 65 0.0014 22.7 1.5 10 445-454 16-25 (33)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2e-14 Score=147.13 Aligned_cols=78 Identities=33% Similarity=0.805 Sum_probs=66.6
Q ss_pred CCCCCCHHHhhcceEEEecccccCCCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC-CCCCCcCCCCCCCC
Q 036764 383 GQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR-NTCPVCRYEMPTDD 460 (476)
Q Consensus 383 g~pPASKsaIe~LPsv~vt~~dl~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~-nTCPVCR~eLptdd 460 (476)
......|..++++|..+++..........|+||+|.|..|++++.|||+|.||..||.+||... ..||+||+.+.+..
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 4556889999999999998765443335899999999999999999999999999999999775 55999999887653
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.34 E-value=2.8e-13 Score=99.34 Aligned_cols=43 Identities=51% Similarity=1.235 Sum_probs=40.3
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
.|+||++.|..++.+..++|+|.||..||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999998889999999999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.15 E-value=2.3e-11 Score=119.42 Aligned_cols=72 Identities=26% Similarity=0.548 Sum_probs=55.5
Q ss_pred CCHHHhhcceEEEeccccc--CCCcccchhhccccCCCCc-----eEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 387 ASRSVVENLTVVVLTQEDV--DGNNAICAVCKDEFGVGEK-----AKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 387 ASKsaIe~LPsv~vt~~dl--~sed~eCaICLEef~~gek-----vr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..+..++.+|.+...-... .+...+|+||++.+..... +..++|+|.||..||.+|++.+.+||+||.++..
T Consensus 150 ~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 150 NYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred hhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 4888999999886543322 2345789999999765331 2344699999999999999999999999998753
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.10 E-value=7.5e-11 Score=96.15 Aligned_cols=45 Identities=38% Similarity=0.920 Sum_probs=36.4
Q ss_pred cccchhhccccCC----------CCceEEeCCCCccchhhHHHHHhCCCCCCCcC
Q 036764 409 NAICAVCKDEFGV----------GEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 409 d~eCaICLEef~~----------gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
+..|+||++.+.. ...+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 4459999999932 23456668999999999999999999999998
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.1e-11 Score=120.89 Aligned_cols=50 Identities=40% Similarity=1.004 Sum_probs=46.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLpt 458 (476)
..+|+|||+.|..+++.+.|||.|.||..|+.+|+. .++.||+||.++|+
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 468999999999999999999999999999999997 68899999999986
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=3.7e-11 Score=123.84 Aligned_cols=71 Identities=31% Similarity=0.696 Sum_probs=54.8
Q ss_pred CCHHHhhcceEEEecccccCCCcccchhhcccc-CCC---------CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 387 ASRSVVENLTVVVLTQEDVDGNNAICAVCKDEF-GVG---------EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 387 ASKsaIe~LPsv~vt~~dl~sed~eCaICLEef-~~g---------ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
+.|..-+-+|.+.. +++..++..|.||++++ ..+ .+++.|||||++|..|++.|++++.+||+||.++
T Consensus 267 ~~kdl~~~~~t~t~--eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 267 ATKDLNAMYPTATE--EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred HhhHHHhhcchhhh--hhhcCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 44555555555443 34566788999999994 332 3689999999999999999999999999999996
Q ss_pred CCC
Q 036764 457 PTD 459 (476)
Q Consensus 457 ptd 459 (476)
..+
T Consensus 345 ifd 347 (491)
T COG5243 345 IFD 347 (491)
T ss_pred ccc
Confidence 543
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=8e-10 Score=110.78 Aligned_cols=52 Identities=23% Similarity=0.710 Sum_probs=45.1
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChH
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDID 462 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~e 462 (476)
....|.+||+... .+..+||||+||+.||..|......||+||.++++..+.
T Consensus 238 a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCccee
Confidence 3467999999865 477899999999999999999999999999999876553
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.79 E-value=4.2e-09 Score=73.97 Aligned_cols=44 Identities=43% Similarity=1.066 Sum_probs=36.3
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEM 456 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eL 456 (476)
.|+||++.+. .....++|+|.||..|+..|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999982 34455559999999999999987 77899999764
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.78 E-value=1.9e-09 Score=103.24 Aligned_cols=57 Identities=23% Similarity=0.512 Sum_probs=44.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----------------CCCCCCcCCCCCCCChHHHHHH
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----------------RNTCPVCRYEMPTDDIDYERRR 467 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----------------~nTCPVCR~eLptdd~eye~~K 467 (476)
+...|+||++.+.. +..++|+|.||..||.+|+.. ..+||+||+.+....+..-+.+
T Consensus 17 ~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred CccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 35679999998753 567889999999999999852 2479999999977655444433
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.78 E-value=4.1e-09 Score=79.33 Aligned_cols=46 Identities=28% Similarity=0.763 Sum_probs=39.4
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
+..|.||++... .+..+||+|. ||..|+.+|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 457999999865 3788999999 999999999999999999999875
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2e-09 Score=105.22 Aligned_cols=53 Identities=26% Similarity=0.603 Sum_probs=42.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC---CCCCCCcCCCCCCCChHH
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI---RNTCPVCRYEMPTDDIDY 463 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~---~nTCPVCR~eLptdd~ey 463 (476)
..-.|.|||+.-+ .++...|||+||+.||.+||.. .+.||+||..+..+.+-.
T Consensus 46 ~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 46 GFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEe
Confidence 4567999999854 4666779999999999999976 446999999987664433
No 12
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.2e-09 Score=114.22 Aligned_cols=49 Identities=37% Similarity=1.056 Sum_probs=43.5
Q ss_pred CcccchhhccccCCCCc--eEEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 408 NNAICAVCKDEFGVGEK--AKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 408 ed~eCaICLEef~~gek--vr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
....|+||++.+..+.+ ++.|||+|+||..|+++|+++.++||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 35689999999987654 88899999999999999999999999999843
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.68 E-value=1.3e-08 Score=73.23 Aligned_cols=39 Identities=38% Similarity=0.937 Sum_probs=33.3
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVC 452 (476)
|+||++.+.. .+..++|||.||..||.+|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999864 44788999999999999999998899998
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.67 E-value=1.7e-08 Score=77.77 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=42.4
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
..|+||++.+.. +..++|||+|+..||.+|++.+.+||+|+.++...+.
T Consensus 2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l 50 (63)
T smart00504 2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDL 50 (63)
T ss_pred cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhc
Confidence 369999999865 5678999999999999999888899999999865443
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=2.6e-08 Score=97.42 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=38.6
Q ss_pred CCcccchhhccccCCC-----CceEEe-CCCCccchhhHHHHHhCC------CCCCCcCCCCCC
Q 036764 407 GNNAICAVCKDEFGVG-----EKAKRL-PCSHRYHGECIVPWLRIR------NTCPVCRYEMPT 458 (476)
Q Consensus 407 sed~eCaICLEef~~g-----ekvr~L-PCgHiFH~~CI~~WL~~~------nTCPVCR~eLpt 458 (476)
+.+.+|+||++..-.+ .....| +|+|.||..||..|.+.+ .+||+||..+..
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4467899999986322 122344 599999999999999753 359999998753
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-08 Score=94.72 Aligned_cols=50 Identities=26% Similarity=0.627 Sum_probs=41.7
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
..|+|||+.+.... +....|||+||..||+.-++....||+||+.|..+.
T Consensus 132 ~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 132 YKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred cCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 46999999987532 244679999999999999999999999999886543
No 17
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.54 E-value=4.2e-08 Score=83.33 Aligned_cols=50 Identities=30% Similarity=0.771 Sum_probs=38.3
Q ss_pred cccchhhccccCCCC----------ceEEeCCCCccchhhHHHHHhC---CCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGE----------KAKRLPCSHRYHGECIVPWLRI---RNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~ge----------kvr~LPCgHiFH~~CI~~WL~~---~nTCPVCR~eLpt 458 (476)
+..|.||+..|...- .+..-.|+|.||..||.+||.. +.+||+||++...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 567999998885221 3344459999999999999975 4689999997643
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.51 E-value=6.8e-08 Score=71.37 Aligned_cols=44 Identities=20% Similarity=0.680 Sum_probs=38.7
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
.|+||++.|.....+..++|+|+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966667888999999999999999866778999985
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.49 E-value=9.7e-08 Score=70.63 Aligned_cols=38 Identities=32% Similarity=0.844 Sum_probs=29.7
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHhCC----CCCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR----NTCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~----nTCPVC 452 (476)
|+||++.|.. ++.|+|||.||..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999964 8889999999999999999753 369998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.48 E-value=1e-07 Score=64.56 Aligned_cols=38 Identities=42% Similarity=1.163 Sum_probs=33.1
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHh-CCCCCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-IRNTCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-~~nTCPVC 452 (476)
|+||++.. ..+..++|+|.||..|+..|++ ...+||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999883 4578889999999999999998 66789998
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=1.2e-07 Score=99.47 Aligned_cols=48 Identities=35% Similarity=0.712 Sum_probs=41.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+||++.|.. +..++|+|.||..||..|+.....||+||..+...
T Consensus 26 ~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 26 SLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 4579999999864 45689999999999999999888999999988654
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.40 E-value=2.1e-07 Score=66.78 Aligned_cols=39 Identities=33% Similarity=0.988 Sum_probs=33.3
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHh--CCCCCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR--IRNTCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~--~~nTCPVC 452 (476)
|+||++.+.. ....++|+|.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999864 335789999999999999998 46679998
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=4.4e-07 Score=97.01 Aligned_cols=50 Identities=28% Similarity=0.786 Sum_probs=40.0
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC-----CCCCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR-----NTCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~-----nTCPVCR~eLptdd~ 461 (476)
+..||||++.... +..+.|||+||..||.++|... ..||+||..+..+++
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl 240 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDL 240 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccce
Confidence 4579999999654 4455699999999999988653 479999998877544
No 24
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.22 E-value=2e-07 Score=104.91 Aligned_cols=69 Identities=22% Similarity=0.595 Sum_probs=46.6
Q ss_pred HHhhcceEEEecccccCCCcccchhhccccCCCC---c-eEEeCCCCccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 390 SVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGE---K-AKRLPCSHRYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 390 saIe~LPsv~vt~~dl~sed~eCaICLEef~~ge---k-vr~LPCgHiFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
+....|-..+.+....-++..+|+||......-+ + .++-.|+|.||..|+.+|++. +++||+||.+++.
T Consensus 1450 s~~D~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1450 SFMDLLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred hHHHHHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4444444444333222345678999998764111 1 233349999999999999976 5689999999874
No 25
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.20 E-value=5.6e-07 Score=92.62 Aligned_cols=52 Identities=27% Similarity=0.689 Sum_probs=45.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDY 463 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ey 463 (476)
-..|.||.+-|.+ +..+||+|.||.-||..+|..+..||.|+.++...+...
T Consensus 23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~ 74 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRN 74 (442)
T ss_pred HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhh
Confidence 3579999999976 778899999999999999999999999999887655543
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.15 E-value=1.3e-06 Score=73.88 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=37.2
Q ss_pred ccchhhccccC-----------CCC--ceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFG-----------VGE--KAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~-----------~ge--kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|+||+..+. .+. ++..-.|.|.||..||.+||..++.||+||++...
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 45777776552 222 23444599999999999999999999999997653
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8.6e-07 Score=88.49 Aligned_cols=50 Identities=24% Similarity=0.701 Sum_probs=41.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHH-HHhCCCC-CCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVP-WLRIRNT-CPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~-WL~~~nT-CPVCR~eLptdd~ 461 (476)
+..|+||++... .+..+||+|+||..||.. |=..+.. ||+||+.+.++.+
T Consensus 215 d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 567999999865 478899999999999999 8766554 9999998866543
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.14 E-value=1.3e-06 Score=70.96 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=40.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCChHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDDIDY 463 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd~ey 463 (476)
...|+||.+.|.. +..+||||.|.+.||..||+. +.+||+|+..+...+...
T Consensus 4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence 4679999999975 778999999999999999988 889999999998765443
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.1e-06 Score=80.34 Aligned_cols=44 Identities=30% Similarity=0.712 Sum_probs=38.2
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
+...|+||++.|... +.+||+|.||..||..++...-.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 456899999999864 78999999999999999885567999993
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.07 E-value=3.8e-06 Score=85.79 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=43.1
Q ss_pred cccchhhccccCCCCc--eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCCC--------ChHHHHHHhhhh
Q 036764 409 NAICAVCKDEFGVGEK--AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPTD--------DIDYERRRRTER 471 (476)
Q Consensus 409 d~eCaICLEef~~gek--vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLptd--------d~eye~~K~~rr 471 (476)
+..||||+..-..... ...-+|||.||..||...+. ....||.|+..+... +..++++...||
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRk 76 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRK 76 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHH
Confidence 4579999996333222 23237999999999999664 456899998876543 556666555443
No 31
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-06 Score=93.52 Aligned_cols=50 Identities=28% Similarity=0.862 Sum_probs=38.7
Q ss_pred cccchhhccccCCCC--------------ceEEeCCCCccchhhHHHHHhCCC-CCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGE--------------KAKRLPCSHRYHGECIVPWLRIRN-TCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~ge--------------kvr~LPCgHiFH~~CI~~WL~~~n-TCPVCR~eLpt 458 (476)
...|+||+..+..-. .-...||.|+||..|+.+|+...+ .||+||.+||+
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 346999999763211 123458999999999999998545 89999999986
No 32
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.98 E-value=4.4e-06 Score=62.63 Aligned_cols=38 Identities=29% Similarity=0.832 Sum_probs=22.9
Q ss_pred chhhccccCC-CCceEEeCCCCccchhhHHHHHhCC----CCCC
Q 036764 412 CAVCKDEFGV-GEKAKRLPCSHRYHGECIVPWLRIR----NTCP 450 (476)
Q Consensus 412 CaICLEef~~-gekvr~LPCgHiFH~~CI~~WL~~~----nTCP 450 (476)
|+||++ |.. ...++.|+|||.|+..||.++++.. -.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 643 4457889999999999999999743 2576
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.96 E-value=3.7e-06 Score=85.35 Aligned_cols=46 Identities=26% Similarity=0.605 Sum_probs=40.3
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
-..|-||.+.+.+ +..++|+|.||.-||...|..+..||+||.+..
T Consensus 25 ~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 3579999999876 566789999999999999999999999998643
No 34
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2.3e-06 Score=86.02 Aligned_cols=50 Identities=32% Similarity=0.858 Sum_probs=40.9
Q ss_pred CcccchhhccccCCCC-------ceEEeCCCCccchhhHHHHH--hCCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGE-------KAKRLPCSHRYHGECIVPWL--RIRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~ge-------kvr~LPCgHiFH~~CI~~WL--~~~nTCPVCR~eLp 457 (476)
++..|+||-..+-... +.-.|.|+|+||..||+-|- ....+||.|+..+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 3568999998875544 67789999999999999997 45779999987653
No 35
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.8e-06 Score=73.43 Aligned_cols=48 Identities=31% Similarity=0.676 Sum_probs=36.8
Q ss_pred cccchhhccccC--------------CCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 409 NAICAVCKDEFG--------------VGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~--------------~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
...|+||+.-+. ....+..-.|.|.||..||.+||+.++.||+|.++-
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 456999987541 112344456999999999999999999999997754
No 36
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.4e-06 Score=71.75 Aligned_cols=49 Identities=29% Similarity=0.783 Sum_probs=35.9
Q ss_pred cccchhhccccCCCCc---------eEEe-CCCCccchhhHHHHHhC---CCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEK---------AKRL-PCSHRYHGECIVPWLRI---RNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gek---------vr~L-PCgHiFH~~CI~~WL~~---~nTCPVCR~eLp 457 (476)
+..|.||+-.|..... +..+ -|.|.||..||.+|+.. +..||+||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4579999988853222 1122 28999999999999965 457999998764
No 37
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.90 E-value=8e-06 Score=62.44 Aligned_cols=42 Identities=33% Similarity=0.879 Sum_probs=33.2
Q ss_pred cchhhccccCCCCceEEeCCC-----CccchhhHHHHHhC--CCCCCCcC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCS-----HRYHGECIVPWLRI--RNTCPVCR 453 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCg-----HiFH~~CI~~WL~~--~nTCPVCR 453 (476)
.|.||++ ......+..+||. |.+|..|+.+|+.. ..+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 3444566788985 88999999999965 44899995
No 38
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.81 E-value=7.5e-06 Score=86.80 Aligned_cols=48 Identities=29% Similarity=0.868 Sum_probs=38.0
Q ss_pred CcccchhhccccCCCCc-eEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
+..+|+|||+.|-.... ++...|.|.||..|+.+|. ..+||+||+...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 34579999999865432 3445699999999999995 568999998765
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.70 E-value=6.5e-06 Score=67.01 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=22.8
Q ss_pred cccchhhccccC-CCCceE--Ee--CCCCccchhhHHHHHhC----C-------CCCCCcCCCCC
Q 036764 409 NAICAVCKDEFG-VGEKAK--RL--PCSHRYHGECIVPWLRI----R-------NTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~-~gekvr--~L--PCgHiFH~~CI~~WL~~----~-------nTCPVCR~eLp 457 (476)
+..|.||+.... .+..+. .- .|+..||..|+.+||.. + .+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 357999998865 332222 11 48999999999999963 1 24999998874
No 40
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=1.1e-05 Score=83.64 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=38.1
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHHhC-CCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRI-RNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~-~nTCPVCR~eLpt 458 (476)
+..|+|||+.+.. .+..+ |.|.||..||.+-++. .++||.||+.+..
T Consensus 43 ~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 43 QVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 5679999999864 33344 9999999999998865 7789999997754
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=6.5e-05 Score=77.90 Aligned_cols=49 Identities=27% Similarity=0.739 Sum_probs=36.8
Q ss_pred cccchhhccccCCCC----ceEEeC-CCCccchhhHHHHH--hC-----CCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGE----KAKRLP-CSHRYHGECIVPWL--RI-----RNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~ge----kvr~LP-CgHiFH~~CI~~WL--~~-----~nTCPVCR~eLp 457 (476)
+.+|.||++...... .-..|| |.|.||..||..|- .+ .+.||.||....
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 557999999875432 123345 99999999999998 33 467999997553
No 42
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6.8e-05 Score=78.65 Aligned_cols=50 Identities=24% Similarity=0.720 Sum_probs=37.6
Q ss_pred ccchhhccccCCCCceEEeC-CCCccchhhHHHHHhC--C-CCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRI--R-NTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~--~-nTCPVCR~eLptd 459 (476)
..|.||.+-+.....+..+. |||+||..|+.+|+.. . .+||+||-.++..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 46999966665555555555 9999999999999975 2 3799999555433
No 43
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.36 E-value=4.3e-05 Score=85.49 Aligned_cols=49 Identities=27% Similarity=0.503 Sum_probs=42.8
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|++|+..+..+......+|+|.||..||..|-+.-.+||+||.++-.
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4699999998876666667899999999999999999999999987643
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.34 E-value=6.5e-05 Score=61.25 Aligned_cols=52 Identities=27% Similarity=0.547 Sum_probs=24.5
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChHHHH
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYER 465 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~eye~ 465 (476)
..|++|.+.+.. .+....|.|+||..||...+. ..||+|+.+--..|.+-.+
T Consensus 8 LrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 8 LRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp TS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----H
T ss_pred cCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhh
Confidence 469999999864 344456999999999988665 3599999877666655443
No 45
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00011 Score=76.23 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=38.9
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..+|.||+.+.. ....|||.|. .|..|.+.-.-+++.||+||+++..
T Consensus 290 gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457999999854 4788999996 7899998866678899999998853
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=8.5e-05 Score=75.77 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=40.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd 460 (476)
..+|+||+.... .+..|+|+|.||..||+--.+. ..+||+||++++..-
T Consensus 7 ~~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 347999999864 3578999999999999887765 556999999998653
No 47
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00019 Score=75.68 Aligned_cols=61 Identities=26% Similarity=0.658 Sum_probs=45.2
Q ss_pred ccchhhccccCCCCc--eEEeCCCCccchhhHHHHHhC--CCCCCCcCCCCCCCChHHHHHHhhh
Q 036764 410 AICAVCKDEFGVGEK--AKRLPCSHRYHGECIVPWLRI--RNTCPVCRYEMPTDDIDYERRRRTE 470 (476)
Q Consensus 410 ~eCaICLEef~~gek--vr~LPCgHiFH~~CI~~WL~~--~nTCPVCR~eLptdd~eye~~K~~r 470 (476)
..|+||++.+...-. ...+.|+|.|...||.+||.+ ...||.|..+-....+..++.++.+
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 479999999864433 444569999999999999952 3469999887776666666555533
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00027 Score=74.64 Aligned_cols=49 Identities=29% Similarity=0.627 Sum_probs=42.6
Q ss_pred CCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 407 GNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 407 sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..+..|.||+..+. ++..+||+|.||..||.+-+.....||.||.+++.
T Consensus 82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 45678999988875 36777999999999999988888899999999976
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00026 Score=79.06 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=39.7
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd~ 461 (476)
-..|++|-..+.. ++...|+|+||..||.+-+.. ...||.|-..+..-|+
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv 693 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDV 693 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccc
Confidence 3579999976543 444569999999999999964 6689999998876654
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.88 E-value=0.00034 Score=73.88 Aligned_cols=49 Identities=29% Similarity=0.797 Sum_probs=39.4
Q ss_pred CCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 407 GNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 407 sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
+--..|-||-+. ...++.-||||+.|..|+..|-.. .++||.||.+|..
T Consensus 367 sTFeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 367 STFELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred chHHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 334579999876 345778899999999999999843 6789999998853
No 51
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.79 E-value=0.00067 Score=69.55 Aligned_cols=91 Identities=22% Similarity=0.423 Sum_probs=60.9
Q ss_pred ChHHHHHHHHHHhhhhhccCCCCCCHHHhhcceEEEecccccCCCcccchhhccccCCCCceEEeCCCCccchhhHHHHH
Q 036764 364 TAEYEMLFGQFAENEMAWMGQPPASRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL 443 (476)
Q Consensus 364 s~eyE~LL~QlaE~e~s~~g~pPASKsaIe~LPsv~vt~~dl~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL 443 (476)
.+++..|..++.+--....+ .|.--..|+........... ....|.|||--|..+.....++|-|.||..|+.++|
T Consensus 74 d~~~~~i~~~~~~iikq~~g-~pii~~lie~~~e~LT~nn~---p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 74 DPEFREIQRQIQEIIKQNSG-MPIICQLIEHCSEFLTENNH---PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred cHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHcccCCC---CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHH
Confidence 36788888887654444444 33333455543333222221 245799999999998888889999999999998776
Q ss_pred hC-----------------------CCCCCCcCCCCCC
Q 036764 444 RI-----------------------RNTCPVCRYEMPT 458 (476)
Q Consensus 444 ~~-----------------------~nTCPVCR~eLpt 458 (476)
.. ...||+||..|..
T Consensus 150 ~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 150 TECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 42 1249999987643
No 52
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.69 E-value=0.00093 Score=72.70 Aligned_cols=57 Identities=23% Similarity=0.551 Sum_probs=44.5
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-----CCCCCCcCCCCCCCChHHHHHH
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-----RNTCPVCRYEMPTDDIDYERRR 467 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-----~nTCPVCR~eLptdd~eye~~K 467 (476)
+..+|.+|-+.-+ ......|.|.||+.||..++.. +-+||+|-..|..+..+...+|
T Consensus 535 ~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek 596 (791)
T KOG1002|consen 535 GEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEK 596 (791)
T ss_pred CceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhh
Confidence 4568999998843 4666789999999999988853 4589999998887766655543
No 53
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.60 E-value=0.001 Score=69.81 Aligned_cols=49 Identities=29% Similarity=0.746 Sum_probs=40.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
+..|+||...+... +....|+|.||..|+.+|+..+..||.||..+...
T Consensus 21 ~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 21 NLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence 56799999998652 22257999999999999999999999999887544
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.60 E-value=0.00068 Score=71.51 Aligned_cols=46 Identities=35% Similarity=0.881 Sum_probs=37.3
Q ss_pred cccchhhccccCCC-CceEEeCCCCccchhhHHHHHhCC--CCCCCcCC
Q 036764 409 NAICAVCKDEFGVG-EKAKRLPCSHRYHGECIVPWLRIR--NTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~g-ekvr~LPCgHiFH~~CI~~WL~~~--nTCPVCR~ 454 (476)
+.-|..|-+.+... +....|||.|+||..|+...|.++ .+||.||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45699999988544 346678999999999999999664 47999993
No 55
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.00051 Score=54.85 Aligned_cols=46 Identities=20% Similarity=0.525 Sum_probs=34.2
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHh-CCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLR-IRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~-~~nTCPVCR~eLp 457 (476)
..+|.||++.... .....|+|. +|..|-.+-++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 3689999987432 233569995 67788776665 6889999999774
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.38 E-value=0.0018 Score=51.21 Aligned_cols=41 Identities=24% Similarity=0.648 Sum_probs=28.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--CCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--RNTCPV 451 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--~nTCPV 451 (476)
...|+|.+..|. ++++...|+|.|-+..|.+||+. ...||+
T Consensus 11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457999999986 45677789999999999999944 446998
No 57
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0038 Score=62.13 Aligned_cols=48 Identities=25% Similarity=0.654 Sum_probs=39.4
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--------CCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--------RNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--------~nTCPVCR~eLpt 458 (476)
.-|..|.-.+..++.++ |-|-|+||..|+..|-.. .-.||.|..+|-+
T Consensus 51 pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 35999999988877664 789999999999999854 2369999998854
No 58
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.06 E-value=0.0014 Score=67.68 Aligned_cols=45 Identities=24% Similarity=0.662 Sum_probs=37.3
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
..+|.+|..-|... ..++ |-|.||+.||.+.|...++||.|...+
T Consensus 15 ~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 15 HITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 46799998887653 2234 999999999999999999999998755
No 59
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.002 Score=61.28 Aligned_cols=41 Identities=22% Similarity=0.626 Sum_probs=32.7
Q ss_pred eEEEecccccCCCcccchhhccccCCCCceEEeCCCCccch
Q 036764 396 TVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHG 436 (476)
Q Consensus 396 Psv~vt~~dl~sed~eCaICLEef~~gekvr~LPCgHiFH~ 436 (476)
|.+.++...+.....+|.|||+++..+.++..|||-++||+
T Consensus 164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34444444444556789999999999999999999999996
No 60
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.86 E-value=0.0044 Score=73.46 Aligned_cols=72 Identities=22% Similarity=0.477 Sum_probs=52.6
Q ss_pred CCHHHhhcceEEEeccccc-CCCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC----------CCCCCcCCC
Q 036764 387 ASRSVVENLTVVVLTQEDV-DGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR----------NTCPVCRYE 455 (476)
Q Consensus 387 ASKsaIe~LPsv~vt~~dl-~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~----------nTCPVCR~e 455 (476)
--|..-..||-....+... ...+..|.||.-+--...+.++|-|+|+||..|...-|..+ -+||+|+.+
T Consensus 3463 GvkNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3463 GVKNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred CccchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 3455566777776544322 12467899999887767788999999999999998766542 269999998
Q ss_pred CCC
Q 036764 456 MPT 458 (476)
Q Consensus 456 Lpt 458 (476)
+..
T Consensus 3543 InH 3545 (3738)
T KOG1428|consen 3543 INH 3545 (3738)
T ss_pred hhh
Confidence 864
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.71 E-value=0.0034 Score=61.47 Aligned_cols=44 Identities=20% Similarity=0.619 Sum_probs=37.8
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
-.|.||+..|.. ++...|+|.||..|..+-++...+|-+|-+..
T Consensus 197 F~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 369999999975 56677999999999999888899999997654
No 62
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.68 E-value=0.022 Score=56.65 Aligned_cols=102 Identities=20% Similarity=0.364 Sum_probs=62.5
Q ss_pred CCCCCccccccChHHHHHHHHHHhhhhhccCCCCCCHHHh---hcceEEEecccc-----------cCCCcccchhhccc
Q 036764 353 PYFGDHDDFIHTAEYEMLFGQFAENEMAWMGQPPASRSVV---ENLTVVVLTQED-----------VDGNNAICAVCKDE 418 (476)
Q Consensus 353 p~~gn~~DyV~s~eyE~LL~QlaE~e~s~~g~pPASKsaI---e~LPsv~vt~~d-----------l~sed~eCaICLEe 418 (476)
|.+.....++|. .+.||.-|...... +..+..-..| ..|-.+.++... .......|||+..+
T Consensus 47 PiV~d~~G~Lyn--Keaile~Ll~~~~~--~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~ 122 (260)
T PF04641_consen 47 PIVSDRLGRLYN--KEAILEFLLDKKKN--KDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKE 122 (260)
T ss_pred CeeeCCCCeeEc--HHHHHHHHHhcCcC--CCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcc
Confidence 555555556666 56788777654322 1122222233 334444454321 12345679999999
Q ss_pred cCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 419 FGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 419 f~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
|....+...| ||||+|...||..- .....||+|-.++...
T Consensus 123 ~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 123 FNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred cCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 9654454444 79999999999986 3356799999886544
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.36 E-value=0.014 Score=44.41 Aligned_cols=40 Identities=28% Similarity=0.772 Sum_probs=27.4
Q ss_pred chhhccccCCCCceEEeCCC--C---ccchhhHHHHHhC--CCCCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCS--H---RYHGECIVPWLRI--RNTCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCg--H---iFH~~CI~~WL~~--~nTCPVC 452 (476)
|-||++.-.... +...||. - ..|..|+.+|+.. ..+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999876544 5667864 3 7899999999974 5679988
No 64
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.012 Score=59.77 Aligned_cols=49 Identities=24% Similarity=0.463 Sum_probs=37.6
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
...+|++|-+.... +-...+|+|+||--||..-+.. .-+||.|-.+.++
T Consensus 238 ~~~~C~~Cg~~Pti--P~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 238 SDTECPVCGEPPTI--PHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred CCceeeccCCCCCC--CeeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence 45689999988544 3444569999999999887653 4689999887764
No 65
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=0.0082 Score=63.03 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=41.7
Q ss_pred CCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 407 GNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 407 sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
+++..|+||...- -.....||+|.-|..||.+.+-..+.|=.|++.+.+.
T Consensus 420 sEd~lCpICyA~p---i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGP---INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceeccc---chhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence 4677899998653 2356679999999999999999999999999988743
No 66
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.06 E-value=0.013 Score=53.94 Aligned_cols=42 Identities=21% Similarity=0.476 Sum_probs=32.9
Q ss_pred cccchhhccccCCCCceEEeCCC------CccchhhHHHHHhCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCS------HRYHGECIVPWLRIRNTCP 450 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCg------HiFH~~CI~~WL~~~nTCP 450 (476)
..+|+||++.+.....++.++|+ |.||..|+.+|-+.++.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDP 73 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDP 73 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCC
Confidence 45799999999876678888886 9999999999954333333
No 67
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.0023 Score=67.52 Aligned_cols=56 Identities=23% Similarity=0.592 Sum_probs=45.8
Q ss_pred cccchhhccccCCC-CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChHHH
Q 036764 409 NAICAVCKDEFGVG-EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYE 464 (476)
Q Consensus 409 d~eCaICLEef~~g-ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~eye 464 (476)
...|+||...+... ++...+-|+|.||..||.+||.....||.||++|+....+.+
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~~e~k 252 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNGFEEK 252 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhhHHHH
Confidence 34699999988654 456667799999999999999988899999999986544443
No 68
>PHA02862 5L protein; Provisional
Probab=94.83 E-value=0.017 Score=54.16 Aligned_cols=45 Identities=22% Similarity=0.666 Sum_probs=34.1
Q ss_pred ccchhhccccCCCCceEEeCCC-----CccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCS-----HRYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCg-----HiFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
..|-||+++-.. . .-||. ..-|+.|+.+|++. +.+||+|+++...
T Consensus 3 diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 469999998532 2 35664 57899999999964 5579999988753
No 69
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.70 E-value=0.024 Score=53.73 Aligned_cols=47 Identities=28% Similarity=0.709 Sum_probs=34.3
Q ss_pred CcccchhhccccCCCCceEEeCCCC-----ccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSH-----RYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgH-----iFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
.+..|-||+++... ..-||.. .-|.+|+.+|+.. ..+||+|+++...
T Consensus 7 ~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 35579999988532 2347654 5599999999965 4579999887643
No 70
>PHA03096 p28-like protein; Provisional
Probab=94.69 E-value=0.014 Score=59.35 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=31.7
Q ss_pred ccchhhccccCCC----CceEEeC-CCCccchhhHHHHHhC---CCCCCCcCC
Q 036764 410 AICAVCKDEFGVG----EKAKRLP-CSHRYHGECIVPWLRI---RNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~g----ekvr~LP-CgHiFH~~CI~~WL~~---~nTCPVCR~ 454 (476)
-.|.||++..... ..-..|+ |.|.||..||..|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 4699999986542 2334466 9999999999999864 234555543
No 71
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.68 E-value=0.013 Score=49.08 Aligned_cols=31 Identities=32% Similarity=0.700 Sum_probs=26.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIV 440 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~ 440 (476)
...|++|...+.. ......||+|+||..|+.
T Consensus 78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 4569999999875 567778999999999975
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.03 Score=55.75 Aligned_cols=48 Identities=25% Similarity=0.659 Sum_probs=39.6
Q ss_pred ccchhhccccCCCC---ceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCC
Q 036764 410 AICAVCKDEFGVGE---KAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMP 457 (476)
Q Consensus 410 ~eCaICLEef~~ge---kvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLp 457 (476)
..|-||-++|+... .++.|.|+|.+|..|+.+-+.. ...||.||....
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE 55 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence 46999999998763 3777889999999999988765 446999999843
No 73
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.012 Score=60.28 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=38.5
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
.|-||...|.. ++...|+|.||..|-.+-++....|++|-+.+-
T Consensus 243 ~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 243 KCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred ccccccccccc---chhhcCCceeehhhhccccccCCcceecccccc
Confidence 59999999974 666789999999999998888899999987664
No 74
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.038 Score=55.84 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=56.3
Q ss_pred hhcceEEEeccccc---------CCCcccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 392 VENLTVVVLTQEDV---------DGNNAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 392 Ie~LPsv~vt~~dl---------~sed~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
++.|-.++++.... .+....|+||.+.+........| ||+|+|+..|..+.++.-..||+|-.++..+++
T Consensus 195 lkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdi 274 (303)
T KOG3039|consen 195 LKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDI 274 (303)
T ss_pred hhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccce
Confidence 44555666654321 12446799999999887777766 499999999999999999999999999988877
Q ss_pred HHH
Q 036764 462 DYE 464 (476)
Q Consensus 462 eye 464 (476)
...
T Consensus 275 I~L 277 (303)
T KOG3039|consen 275 IGL 277 (303)
T ss_pred Eee
Confidence 544
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.018 Score=60.33 Aligned_cols=43 Identities=35% Similarity=0.714 Sum_probs=31.7
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|.||+++... ..-+||||.-| |+.-- +.-.+||+||+.+.
T Consensus 305 p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 4569999999654 78899999966 65432 33445999998764
No 76
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=93.74 E-value=0.028 Score=64.18 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=35.3
Q ss_pred CcccchhhccccCCCCce-EEeCCCCccchhhHHHHHhCC-------CCCCCcCCCC
Q 036764 408 NNAICAVCKDEFGVGEKA-KRLPCSHRYHGECIVPWLRIR-------NTCPVCRYEM 456 (476)
Q Consensus 408 ed~eCaICLEef~~gekv-r~LPCgHiFH~~CI~~WL~~~-------nTCPVCR~eL 456 (476)
...+|.||.+.+.....+ ..-.|=|+||..||++|-+.. -.||.|+...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 356899999998654332 222377999999999999652 2499998443
No 77
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.032 Score=59.49 Aligned_cols=37 Identities=30% Similarity=0.536 Sum_probs=31.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~ 445 (476)
.-.|.||+++..-..-.+.+||+|+||+.|+..++..
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~ 220 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI 220 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence 4579999999765466788999999999999999864
No 78
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.52 E-value=0.056 Score=56.85 Aligned_cols=32 Identities=31% Similarity=0.764 Sum_probs=25.0
Q ss_pred CCCccchhhHHHHHhCC-------------CCCCCcCCCCCCCCh
Q 036764 430 CSHRYHGECIVPWLRIR-------------NTCPVCRYEMPTDDI 461 (476)
Q Consensus 430 CgHiFH~~CI~~WL~~~-------------nTCPVCR~eLptdd~ 461 (476)
|....|.+|+-+|+..+ -+||.||+.++-.|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 56778889999999542 259999999876654
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.38 E-value=0.055 Score=56.95 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=37.0
Q ss_pred CCCcccchhhccccCCCCceEEeCCCCccchhhHHHH--HhCCCCCCCcCCCC
Q 036764 406 DGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW--LRIRNTCPVCRYEM 456 (476)
Q Consensus 406 ~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~W--L~~~nTCPVCR~eL 456 (476)
..+...|.||-.... -...+||+|..|..|..+- |-..+.||+||.+-
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 345567999987753 3677999999999998653 34578999999864
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.37 E-value=0.073 Score=55.14 Aligned_cols=42 Identities=29% Similarity=0.636 Sum_probs=32.5
Q ss_pred ccchhhccccCCCCceEEeC-CCCccchhhHHHHHh-CCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLR-IRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~-~~nTCPVCR~ 454 (476)
+.|+.|.-.... +...| |+|.||..||..-|. ....||.|.+
T Consensus 275 LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 579999877654 33346 899999999997774 5678999955
No 81
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.017 Score=59.29 Aligned_cols=41 Identities=32% Similarity=0.698 Sum_probs=30.7
Q ss_pred cccchhhccccCCCCceEEeCCCCcc-chhhHHHHHhCCCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRY-HGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiF-H~~CI~~WL~~~nTCPVCR~eL 456 (476)
...|+||++... ....|+|||.. |..|-+. -+.||+||+.+
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR----MNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhccc----cccCchHHHHH
Confidence 457999999854 47889999964 6667544 34899999755
No 82
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.37 E-value=0.029 Score=55.87 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=33.5
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
.|..|.-.-. +.+-..+.|.|+||..|...-. ...||+||+.+-..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeeee
Confidence 5887876654 5667777799999999975532 22899999976443
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.18 E-value=0.032 Score=41.82 Aligned_cols=41 Identities=32% Similarity=0.891 Sum_probs=23.3
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHhCCC--CCCCc
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN--TCPVC 452 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n--TCPVC 452 (476)
|.+|.+....|..-..-.|+-.+|..|+..+++.+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888876553322224999999999999997655 79988
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.82 E-value=0.044 Score=57.52 Aligned_cols=53 Identities=19% Similarity=0.560 Sum_probs=37.5
Q ss_pred cccchhhccccCCCCc-eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLptdd~ 461 (476)
+..|+.|++++-+.++ -...|||...|+-|...--+ .+..||-||+......+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 4459999999987665 33456888888888654332 36789999986654443
No 85
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.72 E-value=0.089 Score=54.08 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=38.1
Q ss_pred cccchhhccccCCCCceEEeCC--CCccchhhHHHHHhCCCCCCCcCCCCCCCChHHHHHHh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPC--SHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYERRRR 468 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPC--gHiFH~~CI~~WL~~~nTCPVCR~eLptdd~eye~~K~ 468 (476)
-.+||||.+.+.. -.+.| ||+-|..|-. +.++.||.||.+++ +-..+..+|-
T Consensus 48 lleCPvC~~~l~~----Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g-~~R~~amEkV 101 (299)
T KOG3002|consen 48 LLDCPVCFNPLSP----PIFQCDNGHLACSSCRT---KVSNKCPTCRLPIG-NIRCRAMEKV 101 (299)
T ss_pred hccCchhhccCcc----cceecCCCcEehhhhhh---hhcccCCccccccc-cHHHHHHHHH
Confidence 4579999999864 33557 6999999865 46788999999998 4444444443
No 86
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.72 E-value=0.066 Score=41.57 Aligned_cols=43 Identities=26% Similarity=0.625 Sum_probs=21.5
Q ss_pred chhhccccCCCCceEEeC--CCCccchhhHHHHHh-CCCCCCCcCCC
Q 036764 412 CAVCKDEFGVGEKAKRLP--CSHRYHGECIVPWLR-IRNTCPVCRYE 455 (476)
Q Consensus 412 CaICLEef~~gekvr~LP--CgHiFH~~CI~~WL~-~~nTCPVCR~e 455 (476)
|++|.+++.... ...+| |++..|..|...-++ ..+.||-||++
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence 789999983322 23345 889999999888775 47789999975
No 87
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=0.033 Score=63.72 Aligned_cols=44 Identities=25% Similarity=0.724 Sum_probs=33.9
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|..|--.+.. +.+..-|+|.||..|.. .....||.|+.++..
T Consensus 841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCcccc--ceeeeecccHHHHHhhc---cCcccCCccchhhhh
Confidence 579999877654 45566799999999987 456679999875543
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.20 E-value=0.12 Score=41.34 Aligned_cols=46 Identities=33% Similarity=0.643 Sum_probs=34.0
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
.|-.|... +.+...+||+|+.+..|..- .+-+.||+|-+++.+.++
T Consensus 9 ~~~~~~~~---~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred eEEEcccc---ccccccccccceeeccccCh--hhccCCCCCCCcccCCCC
Confidence 46656544 34567789999999999654 356679999999887664
No 89
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.24 Score=51.79 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=36.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
....|+||+...+. ......-|-+||..||.+.+..+++||+=-.+..-
T Consensus 299 ~~~~CpvClk~r~N--ptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN--PTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASV 347 (357)
T ss_pred ccccChhHHhccCC--CceEEecceEEeHHHHHHHHHhcCCCCccCCcchH
Confidence 34579999988543 22222369999999999999999999997665543
No 90
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.71 E-value=0.14 Score=49.91 Aligned_cols=48 Identities=27% Similarity=0.713 Sum_probs=33.4
Q ss_pred cchhhccccCCCCc----eEEeCCCCccchhhHHHHHhC----C-------CCCCCcCCCCCC
Q 036764 411 ICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWLRI----R-------NTCPVCRYEMPT 458 (476)
Q Consensus 411 eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL~~----~-------nTCPVCR~eLpt 458 (476)
.|.||..--..|.. .-...|+..||.-|+..||+. + ..||.|..++.-
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 48888654333332 223469999999999999974 2 249999988754
No 91
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.37 E-value=0.14 Score=52.22 Aligned_cols=44 Identities=30% Similarity=0.654 Sum_probs=36.9
Q ss_pred cchhhccccCCCC-ceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 411 ICAVCKDEFGVGE-KAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~ge-kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
-|+||.+.+-... .+..++|+|..|..|.......+-+||+|.+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 3999999875544 4667899999999999998877789999987
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=0.2 Score=57.86 Aligned_cols=35 Identities=20% Similarity=0.626 Sum_probs=28.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR 444 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~ 444 (476)
+..|.+|...+.. .+-..-||+|.||+.||.+-..
T Consensus 817 ~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 817 QDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence 5679999988765 3555678999999999987653
No 93
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.98 E-value=0.11 Score=58.76 Aligned_cols=44 Identities=25% Similarity=0.619 Sum_probs=35.5
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--CCCCCCcCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--RNTCPVCRYEMP 457 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--~nTCPVCR~eLp 457 (476)
..|.||++ .+.+...+|+|.||..|+.+-+.. ...||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 57999999 255777889999999999998865 235999997653
No 94
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=0.16 Score=52.85 Aligned_cols=43 Identities=23% Similarity=0.634 Sum_probs=30.9
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
-.|--|--.+. -..+.+||+|+||.+|... ..-+.||.|--.+
T Consensus 91 HfCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 35777865544 3567789999999999754 3466899996543
No 95
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.46 E-value=0.26 Score=52.41 Aligned_cols=45 Identities=22% Similarity=0.421 Sum_probs=39.0
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC---CCCCcC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN---TCPVCR 453 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n---TCPVCR 453 (476)
.-.|||-++.-....++..|+|||+-...-|.+-.+... .||.|=
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 457999999998889999999999999999999776543 699993
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.07 E-value=0.39 Score=45.67 Aligned_cols=60 Identities=27% Similarity=0.582 Sum_probs=39.0
Q ss_pred cccchhhccccCCCCceEEe----------C--CCCcc-chhhHHHHHhC------------------------------
Q 036764 409 NAICAVCKDEFGVGEKAKRL----------P--CSHRY-HGECIVPWLRI------------------------------ 445 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L----------P--CgHiF-H~~CI~~WL~~------------------------------ 445 (476)
+..|+|||+-.-. ++.| | |...| |..|+.++-+.
T Consensus 2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 4579999997432 2222 2 55444 56799887542
Q ss_pred -CCCCCCcCCCCCCCChHHHHHHhhhh
Q 036764 446 -RNTCPVCRYEMPTDDIDYERRRRTER 471 (476)
Q Consensus 446 -~nTCPVCR~eLptdd~eye~~K~~rr 471 (476)
.-.||+||.++....+-.+.++-+-.
T Consensus 79 ~~L~CPLCRG~V~GWtvve~AR~~LN~ 105 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVEPARRFLNA 105 (162)
T ss_pred ccccCccccCceeceEEchHHHHHhcc
Confidence 11499999999888777766665443
No 97
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.12 E-value=0.2 Score=39.22 Aligned_cols=43 Identities=28% Similarity=0.619 Sum_probs=25.5
Q ss_pred chhhccccCCCCceEEeCCC-CccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 412 CAVCKDEFGVGEKAKRLPCS-HRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCg-HiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
|--|.-.. ...+.|+ |.-|..|+...|.....||+|.++||++
T Consensus 5 CKsCWf~~-----k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 5 CKSCWFAN-----KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp --SS-S-------SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred ChhhhhcC-----CCeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 55565442 2234585 9999999999999999999999999875
No 98
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.39 E-value=0.35 Score=57.77 Aligned_cols=43 Identities=26% Similarity=0.680 Sum_probs=36.3
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
..|.||++.+.. ......|+|.+|..|+..|+..+..||.|+.
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 479999999762 2344569999999999999999999999974
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.20 E-value=0.35 Score=55.26 Aligned_cols=39 Identities=31% Similarity=0.792 Sum_probs=28.4
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCC
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPV 451 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPV 451 (476)
|+||--.+. +....+..|+|+.|..|.+.|++....||.
T Consensus 1031 C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1031 CAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 555443322 233455679999999999999999999984
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=85.79 E-value=0.19 Score=49.57 Aligned_cols=51 Identities=27% Similarity=0.628 Sum_probs=37.2
Q ss_pred cccchhhccccCCCCc-eEEeCCC-----CccchhhHHHHHhC--CCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEK-AKRLPCS-----HRYHGECIVPWLRI--RNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gek-vr~LPCg-----HiFH~~CI~~WL~~--~nTCPVCR~eLptd 459 (476)
...|-||......... ....||. ...|+.|+..|+.. ...|.+|.+.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 3579999997654322 4567764 66799999999974 55799998866544
No 101
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.87 E-value=0.41 Score=55.12 Aligned_cols=53 Identities=28% Similarity=0.740 Sum_probs=38.9
Q ss_pred CcccchhhccccCCCCceEEeCCCC-----ccchhhHHHHHhC--CCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSH-----RYHGECIVPWLRI--RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgH-----iFH~~CI~~WL~~--~nTCPVCR~eLptdd~ 461 (476)
+...|-||.-+-.. +.+..=||++ ..|.+|+.+|+.- ...|-+|.+++..+++
T Consensus 11 d~~~CRICr~e~~~-d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIR-DDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCC-CCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 34679999987543 3444557764 5799999999975 4469999998876654
No 102
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.70 E-value=1.1 Score=46.27 Aligned_cols=46 Identities=22% Similarity=0.525 Sum_probs=33.2
Q ss_pred cchhhccccCCCCc--eEEeCCCCccchhhHHHHHhC-CCCCCCcCCCC
Q 036764 411 ICAVCKDEFGVGEK--AKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEM 456 (476)
Q Consensus 411 eCaICLEef~~gek--vr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eL 456 (476)
.|++|+-..--.-. ...=+|+|..|.+|...-+.. ...||.|-..|
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 59999876432222 222369999999999998854 56899997655
No 103
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=83.36 E-value=0.62 Score=46.34 Aligned_cols=42 Identities=31% Similarity=0.724 Sum_probs=35.0
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
-.|.+|..-.-.+ .++-.|+-.||..|+...++....||.|-
T Consensus 182 k~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 182 KNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 3699999876543 45567999999999999999999999994
No 104
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.28 E-value=0.41 Score=48.75 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=33.7
Q ss_pred cccchhhccccCCCCce-EEeCC-----CCccchhhHHHHHhCC--------CCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKA-KRLPC-----SHRYHGECIVPWLRIR--------NTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekv-r~LPC-----gHiFH~~CI~~WL~~~--------nTCPVCR~eLp 457 (476)
+..|=||+..=+..... -.-|| .|..|..|+..|+..+ -+||.|+++..
T Consensus 20 eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 20 ERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 45699999885443322 12355 3899999999999431 25999998654
No 105
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=82.60 E-value=0.62 Score=43.35 Aligned_cols=52 Identities=19% Similarity=0.446 Sum_probs=36.3
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHHhC---CCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRI---RNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~---~nTCPVCR~eLptdd 460 (476)
-.+|.||++......-.+.=- ||-..|..|-..-|+. +..||+|++++.+..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 457999999854322111111 8999999988776653 678999999886543
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.45 E-value=0.44 Score=53.68 Aligned_cols=42 Identities=26% Similarity=0.696 Sum_probs=31.6
Q ss_pred ccchhhccccCCCC-ceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGE-KAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~ge-kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
..|.||+..|.... .++.|-|+|..|+.|+..- .+.+|| |++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 46999988876543 3566779999999999875 356788 644
No 107
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.13 E-value=0.43 Score=49.51 Aligned_cols=32 Identities=22% Similarity=0.589 Sum_probs=24.6
Q ss_pred CCCccchhhHHHHHhC-------------CCCCCCcCCCCCCCCh
Q 036764 430 CSHRYHGECIVPWLRI-------------RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 430 CgHiFH~~CI~~WL~~-------------~nTCPVCR~eLptdd~ 461 (476)
|...+|.+|+-+|+.. +-+||+||+.++-.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5677888999999843 3479999998876554
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=80.88 E-value=1.5 Score=35.06 Aligned_cols=43 Identities=28% Similarity=0.672 Sum_probs=32.2
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCCCCCCC--cCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIRNTCPV--CRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~nTCPV--CR~e 455 (476)
...|++|-+.|..++.+..-| |+-.||+.|..+ ...|-+ |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 346999999998777777777 999999999433 455644 5443
No 109
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=0.73 Score=50.49 Aligned_cols=45 Identities=40% Similarity=0.999 Sum_probs=37.1
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
....|.||+..+ ..+..+|. |..|+.+|+..+..||+|+..+..+
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcc
Confidence 456799999998 35566788 9999999999999999998866544
No 110
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.11 E-value=1.5 Score=46.42 Aligned_cols=52 Identities=21% Similarity=0.590 Sum_probs=34.3
Q ss_pred cccchhhccccCCC-CceEEeCCCCccchhhHHHHHhCC------CCCC--CcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVG-EKAKRLPCSHRYHGECIVPWLRIR------NTCP--VCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~g-ekvr~LPCgHiFH~~CI~~WL~~~------nTCP--VCR~eLptdd 460 (476)
...|.||....... .....+.|+|.||..|+.+.+..+ .+|| -|...+++..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 55799999554433 233345599999999999988743 2464 3555555543
No 111
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=1.4 Score=43.22 Aligned_cols=39 Identities=31% Similarity=0.731 Sum_probs=28.5
Q ss_pred chhhccccCCCCceEEeCCCC-ccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 412 CAVCKDEFGVGEKAKRLPCSH-RYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgH-iFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
|-+|.+. +..+..+||.| .+|..|-.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 8888876 44688999986 577778543 346999987543
No 112
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=74.94 E-value=0.67 Score=52.52 Aligned_cols=47 Identities=17% Similarity=0.534 Sum_probs=36.7
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC---CCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI---RNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~---~nTCPVCR~eLpt 458 (476)
..+|+||+..+.. +..+.|-|.|+..|+..-|.. ...||+|+..++.
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4579999999865 356779999999999877754 3479999976643
No 113
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=73.32 E-value=1.6 Score=44.44 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=33.4
Q ss_pred CcccchhhccccCCCCc--eEEeC-CCCccchhhHHHHHhC-CCCCC--CcC
Q 036764 408 NNAICAVCKDEFGVGEK--AKRLP-CSHRYHGECIVPWLRI-RNTCP--VCR 453 (476)
Q Consensus 408 ed~eCaICLEef~~gek--vr~LP-CgHiFH~~CI~~WL~~-~nTCP--VCR 453 (476)
.+..||||+..--..-. ...-| |=|.+|.+|+.+-+.. ...|| -|-
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG 60 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 35579999986433222 33336 9999999999999865 56899 674
No 114
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=71.10 E-value=1.4 Score=49.36 Aligned_cols=40 Identities=25% Similarity=0.717 Sum_probs=25.9
Q ss_pred ccchhhcc-----ccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCc
Q 036764 410 AICAVCKD-----EFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVC 452 (476)
Q Consensus 410 ~eCaICLE-----ef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVC 452 (476)
-.|.+|.. .|......++..|+++||..|... ...-||.|
T Consensus 512 fiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred eeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 34666633 243334456667999999999433 34449999
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=71.08 E-value=2.5 Score=48.53 Aligned_cols=43 Identities=23% Similarity=0.504 Sum_probs=30.7
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCC--cCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPV--CRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPV--CR~ 454 (476)
.|++|-..+. |..+-+--|+|.-|..|+++|+..+..||. |-.
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~ 825 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPH 825 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCc
Confidence 5777765542 222322239999999999999999888876 643
No 116
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=69.97 E-value=2.3 Score=46.37 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=29.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~ 445 (476)
++..|+||..-|.. ++.|||+|..|+.|...-+.+
T Consensus 3 eelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhccC---ceEeecccHHHHHHHHhhccc
Confidence 35679999998864 889999999999999876644
No 117
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=67.69 E-value=3.2 Score=42.64 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=32.8
Q ss_pred ccchhhccccC-CCCceEEeC---CCCccchhhHHHHHh-C--------CCCCCCcCCCC
Q 036764 410 AICAVCKDEFG-VGEKAKRLP---CSHRYHGECIVPWLR-I--------RNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~-~gekvr~LP---CgHiFH~~CI~~WL~-~--------~nTCPVCR~eL 456 (476)
.+|-+|.+++. .+.....-| |.-++|..|+..-+. . ...||.|++.+
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 47999999994 333332222 889999999988442 2 34699999854
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=67.26 E-value=2.3 Score=49.15 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=34.4
Q ss_pred cccchhhccccCCCC-ceEEeC---CCCccchhhHHHHHhC------CCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGE-KAKRLP---CSHRYHGECIVPWLRI------RNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~ge-kvr~LP---CgHiFH~~CI~~WL~~------~nTCPVCR~eLp 457 (476)
...|.||.-++.... ....+| |.|.||..||..|+.+ +-.|++|...|.
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 456888888776522 123344 9999999999999964 335899876553
No 119
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=64.51 E-value=6.7 Score=30.23 Aligned_cols=43 Identities=16% Similarity=0.446 Sum_probs=20.3
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-----CCCCCCcCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-----RNTCPVCRYE 455 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-----~nTCPVCR~e 455 (476)
..|+|....+.. .++...|.|.-|.+ +..||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 469998888764 56666699986533 3445532 2259999763
No 120
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.97 E-value=4.3 Score=46.90 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=34.0
Q ss_pred ccchhhccccCCC----CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVG----EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~g----ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|.-|.+..... ..++.+-|+|.||..|+.--..+++ |-.|-...-+
T Consensus 785 ~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~~~~~ 836 (846)
T KOG2066|consen 785 ERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESGKNRT 836 (846)
T ss_pred hhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhceecC
Confidence 3799999886532 2467788999999999987665544 7777544433
No 121
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=61.48 E-value=4.8 Score=38.98 Aligned_cols=40 Identities=25% Similarity=0.827 Sum_probs=27.8
Q ss_pred cccchhhcc-----ccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcC
Q 036764 409 NAICAVCKD-----EFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 409 d~eCaICLE-----ef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
...|.||.. .|......+.-.|+.+||..|.. ...||-|.
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 346888875 34443344444599999999965 26799994
No 122
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.27 E-value=5.8 Score=41.88 Aligned_cols=44 Identities=25% Similarity=0.386 Sum_probs=35.9
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC---CCCCCCc
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI---RNTCPVC 452 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~---~nTCPVC 452 (476)
--.||+-++.-.....+..|.|+|+.-...+..--+. +..||.|
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4579999988888888999999999999888875443 3359999
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.05 E-value=5.4 Score=41.93 Aligned_cols=50 Identities=20% Similarity=0.463 Sum_probs=35.8
Q ss_pred ccchhhccccCCC-CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVG-EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~g-ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+||-+..-.. ......||++..|..|...-...+.+||.||+.....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccC
Confidence 4699999876322 2333345788888888888777888999999766544
No 124
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.69 E-value=4.3 Score=43.11 Aligned_cols=43 Identities=23% Similarity=0.533 Sum_probs=31.2
Q ss_pred ccchhhccccCCCCceEE--eCCCCccchhhHHHHHhCCCCCCCc
Q 036764 410 AICAVCKDEFGVGEKAKR--LPCSHRYHGECIVPWLRIRNTCPVC 452 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~--LPCgHiFH~~CI~~WL~~~nTCPVC 452 (476)
..|++|+-.+........ -.|+|.||..|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 369998887654443333 3389999999999998777777544
No 125
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=57.85 E-value=8.3 Score=40.78 Aligned_cols=51 Identities=22% Similarity=0.561 Sum_probs=33.7
Q ss_pred cccchhhccccC-----CCC-----------ceEEeCCCCccchhhHHHHHhC---------CCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFG-----VGE-----------KAKRLPCSHRYHGECIVPWLRI---------RNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~-----~ge-----------kvr~LPCgHiFH~~CI~~WL~~---------~nTCPVCR~eLptd 459 (476)
..+|++|+..-. .+. .-.--||+|+--..-..-|-+. +..||.|-+.|...
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 567999997521 011 1122379998888888888765 33599998877543
No 126
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=57.04 E-value=1.4 Score=44.30 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=21.0
Q ss_pred ccchhhccccCCCCceEEe--CCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRL--PCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L--PCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
..||||-.....+.-...- --.+.+|.-|-..|--.+..||.|-.
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~ 219 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGN 219 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT--
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCC
Confidence 5799998764321100000 02577888899999888999999954
No 127
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.65 E-value=8 Score=40.34 Aligned_cols=53 Identities=17% Similarity=0.400 Sum_probs=36.7
Q ss_pred CcccchhhccccCCCCceEEeC--CCCccchhhHHHHHhCCC-----------CCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLP--CSHRYHGECIVPWLRIRN-----------TCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LP--CgHiFH~~CI~~WL~~~n-----------TCPVCR~eLptdd~ 461 (476)
....|.+|.+.++..-- ++.| =.|+||..|-.+-++.+. .||+--..+|-...
T Consensus 267 apLcCTLC~ERLEDTHF-VQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPLvgS~vPWAFM 332 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHF-VQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPLVGSNVPWAFM 332 (352)
T ss_pred CceeehhhhhhhccCce-eecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcccCCcccHHHh
Confidence 34689999999876333 3333 379999999999997632 47777666654333
No 128
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.87 E-value=18 Score=37.29 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=35.4
Q ss_pred cccchhhccccCCCCc-eEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
...|+|---+|...-. ....+|||+|-...+++. ...+|++|-+.....+
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDD 161 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccC
Confidence 3469997777754333 334469999998887763 3678999998776554
No 129
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=52.65 E-value=14 Score=30.40 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=13.4
Q ss_pred CCCCCCCcCCCCCCCC
Q 036764 445 IRNTCPVCRYEMPTDD 460 (476)
Q Consensus 445 ~~nTCPVCR~eLptdd 460 (476)
.|..||+|-+.+|++.
T Consensus 7 PH~HC~VCg~aIp~de 22 (64)
T COG4068 7 PHRHCVVCGKAIPPDE 22 (64)
T ss_pred CCccccccCCcCCCcc
Confidence 4678999999999874
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.63 E-value=8.7 Score=41.25 Aligned_cols=35 Identities=20% Similarity=0.601 Sum_probs=29.2
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI 445 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~ 445 (476)
...|.||.+.+.. ....+.|+|.||..|+...+..
T Consensus 70 ~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 70 DVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred cccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 4579999999864 4666789999999999998864
No 132
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=46.65 E-value=21 Score=24.11 Aligned_cols=38 Identities=26% Similarity=0.538 Sum_probs=25.3
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
.|+.|.+.+...... ...=+..||..|. .|..|+..|.
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 388888887654222 2234678998873 6888887764
No 133
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=46.05 E-value=12 Score=27.70 Aligned_cols=43 Identities=33% Similarity=0.695 Sum_probs=28.4
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC------CCCCCCcC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI------RNTCPVCR 453 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~------~nTCPVCR 453 (476)
.|.||...-..+.-+..-.|...||..|+.+=... .-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 38899984433333444459999999998765431 23588875
No 134
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=4.8 Score=40.16 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=36.6
Q ss_pred ccchhhccccCCC---CceEEeC--------CCCccchhhHHHHHhCC-CCCCCcCCC
Q 036764 410 AICAVCKDEFGVG---EKAKRLP--------CSHRYHGECIVPWLRIR-NTCPVCRYE 455 (476)
Q Consensus 410 ~eCaICLEef~~g---ekvr~LP--------CgHiFH~~CI~~WL~~~-nTCPVCR~e 455 (476)
..|.||...|... ..++.+. |+|..|..|+..-+... ..||.||..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5699999998732 2466677 99999999999988654 489999863
No 135
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=44.26 E-value=17 Score=38.68 Aligned_cols=47 Identities=19% Similarity=0.451 Sum_probs=34.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~e 455 (476)
...|-.|..+.......+.-.|++.||..|=.--=.+-..||-|...
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh~ 376 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEHK 376 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCCC
Confidence 34599998777666666666699999999965433444569999743
No 136
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=43.72 E-value=16 Score=29.55 Aligned_cols=15 Identities=40% Similarity=0.972 Sum_probs=11.2
Q ss_pred CCCCCCCcCCCCCCC
Q 036764 445 IRNTCPVCRYEMPTD 459 (476)
Q Consensus 445 ~~nTCPVCR~eLptd 459 (476)
.|+.||+|-.+++++
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 467788888888765
No 137
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.40 E-value=6.1 Score=40.49 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=34.7
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChHHHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYERRR 467 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~eye~~K 467 (476)
-..|+.||..+.. +.+.|=||+|++.||.+++..++ +++...-..|++.|
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~ilaqK------ke~arrlkayekqr 92 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYILAQK------KEIARRLKAYEKQR 92 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 3469999998764 66778899999999999885332 23333345555554
No 138
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.90 E-value=8.5 Score=41.55 Aligned_cols=50 Identities=22% Similarity=0.547 Sum_probs=0.0
Q ss_pred cccchhhccccC-----CCC-----------ceEEeCCCCccchhhHHHHHhC---------CCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFG-----VGE-----------KAKRLPCSHRYHGECIVPWLRI---------RNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~-----~ge-----------kvr~LPCgHiFH~~CI~~WL~~---------~nTCPVCR~eLpt 458 (476)
..+|++|+..-. .+. ...--||||+--..+.+-|-+. +.-||.|-..|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 457999997521 011 1222489999888899999865 2359999888753
No 139
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=38.91 E-value=16 Score=41.68 Aligned_cols=47 Identities=30% Similarity=0.825 Sum_probs=29.6
Q ss_pred cccchhhccccCCCCceEEe---CCCCccchhhHHHHHhCC-----CCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL---PCSHRYHGECIVPWLRIR-----NTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L---PCgHiFH~~CI~~WL~~~-----nTCPVCR~eL 456 (476)
...|.||--. ..+...+.+ .|+-.||..|+..|+... -.||-||...
T Consensus 18 ~~mc~l~~s~-G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe 72 (694)
T KOG4443|consen 18 CLMCPLCGSS-GKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCE 72 (694)
T ss_pred hhhhhhhccc-cccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeee
Confidence 3467777433 222222223 388999999999999642 3588887643
No 140
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=38.68 E-value=13 Score=37.82 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=24.2
Q ss_pred cchhhHHHHHhCCCCCCCcCCCCCCCChHHHHHHh
Q 036764 434 YHGECIVPWLRIRNTCPVCRYEMPTDDIDYERRRR 468 (476)
Q Consensus 434 FH~~CI~~WL~~~nTCPVCR~eLptdd~eye~~K~ 468 (476)
.|..|-..--+.-..||+|+..-....+...++|.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrNPKKpkrk~ 285 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRNPKKPKRKV 285 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCCCCCccccc
Confidence 34556555445677999999888777777665553
No 141
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=36.97 E-value=30 Score=41.72 Aligned_cols=47 Identities=19% Similarity=0.449 Sum_probs=31.6
Q ss_pred ccchhhccccCCCCc----eEEeCCCCccchhhHHHHH-hCCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL-~~~nTCPVCR~eL 456 (476)
..|.||-+++..... +.+--|+--.|+.|..-=. ..++.||.|++..
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrY 69 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKY 69 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 479999998754332 3333477779999983222 2366899998744
No 142
>PLN02195 cellulose synthase A
Probab=35.74 E-value=41 Score=40.22 Aligned_cols=58 Identities=26% Similarity=0.496 Sum_probs=37.7
Q ss_pred CcccchhhccccCCCCc----eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCC----CCChHHHH
Q 036764 408 NNAICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMP----TDDIDYER 465 (476)
Q Consensus 408 ed~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLp----tdd~eye~ 465 (476)
....|.||-+.+..... +.+--|+--.|+.|..-=-+ .++.||.|++... .++.+++.
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~~~d~~~~~ 71 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENVFDDVETKH 71 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccccchhhhhh
Confidence 34579999997754331 34445888899999832222 3667999987654 34555554
No 143
>PLN02189 cellulose synthase
Probab=34.58 E-value=33 Score=41.16 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=31.2
Q ss_pred ccchhhccccCCCC---c-eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGE---K-AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~ge---k-vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eL 456 (476)
..|.||-+++.... . +.+--|+--.|+.|..-=.+ .++.||.|++..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 47999999975332 2 22233777899999843222 366899998754
No 144
>PLN02400 cellulose synthase
Probab=34.47 E-value=25 Score=42.37 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=31.6
Q ss_pred ccchhhccccCCCCc----eEEeCCCCccchhhHHHHH-hCCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWL-RIRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL-~~~nTCPVCR~eL 456 (476)
..|.||-+++..... +.+--|+--.|+.|..-=- ..++.||.|++..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRY 88 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcc
Confidence 479999998754332 4444588889999973211 2356799998754
No 145
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=34.02 E-value=10 Score=39.39 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=28.9
Q ss_pred ccchhhccccCCCCceEEe--C--CCCccchhhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRL--P--CSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L--P--CgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
..|+||-..-..+. ++.. . =.+.+|.-|-..|--.+..||.|-.
T Consensus 185 ~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 185 TLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 47999987643211 1110 1 2366777788899888899999965
No 146
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.65 E-value=55 Score=26.64 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=33.4
Q ss_pred cchhhccccCCCC-ceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 411 ICAVCKDEFGVGE-KAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 411 eCaICLEef~~ge-kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
.|-.|-..+.... .+.+-+=...||..|...-| ++.||.|-.+|...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 4777777776554 33333334789999998866 68899999888643
No 147
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=33.54 E-value=14 Score=45.52 Aligned_cols=48 Identities=31% Similarity=0.554 Sum_probs=37.2
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~eL 456 (476)
...|.||+..........+.-|.-.||..|+.+-+.. .-.||-||.+-
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4579999998776555555568999999999998864 33699998754
No 148
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=33.08 E-value=25 Score=27.73 Aligned_cols=35 Identities=14% Similarity=0.455 Sum_probs=18.6
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWL 443 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL 443 (476)
...|.+|...|..-...-.-. ||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 457999999997654444444 99999999986654
No 149
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=33.01 E-value=33 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.475 Sum_probs=26.6
Q ss_pred chhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 412 CAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 412 CaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
|+.|...+..... ....-+..||..|. +|-.|++.|....
T Consensus 1 C~~C~~~I~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEI-VIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSE-EEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEE-EEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 6777777764332 22346788888773 6888888886554
No 150
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.26 E-value=13 Score=38.70 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=30.1
Q ss_pred cccchhhccccCCCCceEEe--C--CCCccchhhHHHHHhCCCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL--P--CSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L--P--CgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
...||||-..-..+ +..+ . =.+.+|.-|-..|--.+..||.|-.
T Consensus 187 ~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799998764322 1111 1 2466778898999888999999964
No 151
>PLN02436 cellulose synthase A
Probab=31.76 E-value=40 Score=40.74 Aligned_cols=47 Identities=23% Similarity=0.491 Sum_probs=31.3
Q ss_pred ccchhhccccCCC---Cc-eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVG---EK-AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~g---ek-vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eL 456 (476)
..|.||-+++... +. +.+=-|+--.|+.|..-=.+ .++.||.|++..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCch
Confidence 4799999997433 22 33333777899999843222 366899998754
No 152
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.63 E-value=36 Score=26.90 Aligned_cols=42 Identities=29% Similarity=0.649 Sum_probs=19.7
Q ss_pred chhhccccCCCC------ceEEeC-CCCccchhhHHHHHhCCCCCCCcC
Q 036764 412 CAVCKDEFGVGE------KAKRLP-CSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 412 CaICLEef~~ge------kvr~LP-CgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
|--|+..|.... ....-| |++.||..|=.--=..-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 555666665431 122334 999999999543223344699883
No 153
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=31.45 E-value=21 Score=35.70 Aligned_cols=31 Identities=19% Similarity=0.440 Sum_probs=19.9
Q ss_pred hhhHHHHHhCCCCCCCcCCCCCCCChHHHHH
Q 036764 436 GECIVPWLRIRNTCPVCRYEMPTDDIDYERR 466 (476)
Q Consensus 436 ~~CI~~WL~~~nTCPVCR~eLptdd~eye~~ 466 (476)
..|-+.-=+.-..||+|+..--...+...++
T Consensus 198 ~sC~qqIHRNAPiCPlCK~KsRSrnpKk~k~ 228 (230)
T PF10146_consen 198 QSCHQQIHRNAPICPLCKAKSRSRNPKKPKR 228 (230)
T ss_pred HhHHHHHhcCCCCCcccccccccCCCCCccc
Confidence 3444443345678999998877776665444
No 154
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=30.76 E-value=23 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=21.8
Q ss_pred cccchhhccccCCCCceEEeC--CCCccchhhHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLP--CSHRYHGECIVP 441 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP--CgHiFH~~CI~~ 441 (476)
...|.||.... |..++... |...||..|...
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 45799999873 22333333 888999999866
No 155
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=30.25 E-value=40 Score=29.07 Aligned_cols=44 Identities=23% Similarity=0.478 Sum_probs=32.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCChHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDIDYE 464 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~eye 464 (476)
...|.-|.....--+.. | |..|+..+..|..|+++++..-+-.|
T Consensus 33 rS~C~~C~~~L~~~~lI---P---------i~S~l~lrGrCr~C~~~I~~~y~l~E 76 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLI---P---------ILSYLLLRGRCRYCGAPIPPRYPLIE 76 (92)
T ss_pred CCcCcCCCCcCcccccc---h---------HHHHHHhCCCCcccCCCCChHHHHHH
Confidence 35799998876543222 2 77899999999999999987544444
No 156
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=29.07 E-value=35 Score=29.41 Aligned_cols=46 Identities=24% Similarity=0.576 Sum_probs=18.7
Q ss_pred cccchhhccccCCCCc----eEEeCCCCccchhhHHHHHh-CCCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWLR-IRNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~ 454 (476)
...|.||-+.+..... +...-|+--.|+.|..-=.+ .++.||.|++
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt 59 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKT 59 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCC
Confidence 3579999998754332 33334888888999755443 4667999984
No 157
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=28.27 E-value=16 Score=37.82 Aligned_cols=37 Identities=27% Similarity=0.726 Sum_probs=30.7
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR 446 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~ 446 (476)
.+|.+|+++|..+......-|..+||..|+..|+...
T Consensus 215 rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 215 RVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred eecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3899999999876666666677799999999999753
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.45 E-value=18 Score=27.89 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=7.4
Q ss_pred CCCCcCCCCCCCCh
Q 036764 448 TCPVCRYEMPTDDI 461 (476)
Q Consensus 448 TCPVCR~eLptdd~ 461 (476)
.||+|.++|.....
T Consensus 22 ~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR 35 (54)
T ss_dssp E-TTT--EE-HHHH
T ss_pred cCCCCCCCCCHHHH
Confidence 89999998865443
No 159
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=27.24 E-value=57 Score=28.88 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=27.7
Q ss_pred ccchhhccccCCCCceEE------eCC---CCccchhhHHHHHhC---------CCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKR------LPC---SHRYHGECIVPWLRI---------RNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~------LPC---gHiFH~~CI~~WL~~---------~nTCPVCR~ 454 (476)
..|-.|...-. +.+... ..| .-.||..||..++.. .-.||.||.
T Consensus 8 ~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 35777776422 111222 336 778999999888853 235999986
No 160
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=25.52 E-value=37 Score=23.23 Aligned_cols=12 Identities=50% Similarity=1.151 Sum_probs=8.8
Q ss_pred CCCCCcCCCCCC
Q 036764 447 NTCPVCRYEMPT 458 (476)
Q Consensus 447 nTCPVCR~eLpt 458 (476)
++||.|++.++.
T Consensus 1 K~CP~C~~~V~~ 12 (26)
T PF10571_consen 1 KTCPECGAEVPE 12 (26)
T ss_pred CcCCCCcCCchh
Confidence 468888887754
No 161
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.43 E-value=26 Score=37.66 Aligned_cols=46 Identities=28% Similarity=0.673 Sum_probs=26.1
Q ss_pred cccchhhccccCCCCceEEeC---CCCccc--------hhhHHHHH-----hCCCCCCCcCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP---CSHRYH--------GECIVPWL-----RIRNTCPVCRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP---CgHiFH--------~~CI~~WL-----~~~nTCPVCR~e 455 (476)
++.|++|-+.++ |-.-..|. |+-.|. ..|+..-- ..++.||.||..
T Consensus 15 ~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 15 GELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 457999988764 34444555 444442 23443211 125679999973
No 162
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=25.38 E-value=23 Score=38.35 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=0.0
Q ss_pred ceEEeCCCCccchhhHHHHHhC------CCCCCCcCCCCCC
Q 036764 424 KAKRLPCSHRYHGECIVPWLRI------RNTCPVCRYEMPT 458 (476)
Q Consensus 424 kvr~LPCgHiFH~~CI~~WL~~------~nTCPVCR~eLpt 458 (476)
.-.-|.|+|++.. ..|-.. ..+||+||..-+.
T Consensus 303 P~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 303 PWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -----------------------------------------
T ss_pred ceeeccccceeee---cccccccccccccccCCCccccCCc
Confidence 3445789997764 356532 4579999986554
No 163
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.37 E-value=28 Score=37.44 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=25.2
Q ss_pred cchhhccccCCCCc-----eEEeCCCCccchhhHHHHHhC
Q 036764 411 ICAVCKDEFGVGEK-----AKRLPCSHRYHGECIVPWLRI 445 (476)
Q Consensus 411 eCaICLEef~~gek-----vr~LPCgHiFH~~CI~~WL~~ 445 (476)
.||.|+...+.... ....+|.|.||..|+..|-..
T Consensus 228 ~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 228 ECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred cCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 39999888765442 122249999999998888654
No 164
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.36 E-value=7.5 Score=32.61 Aligned_cols=40 Identities=20% Similarity=0.470 Sum_probs=20.5
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
..||.|..++.... ++.+|..|-.. +.....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 36899988754211 66667777554 345567999987764
No 165
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=25.35 E-value=42 Score=25.29 Aligned_cols=35 Identities=14% Similarity=0.465 Sum_probs=25.4
Q ss_pred ccchhhccccCCCCceEEe-CCCCccchhhHHHHHh
Q 036764 410 AICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLR 444 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~ 444 (476)
..|.+|...|........- .|+++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 4699999888765443333 4999999999876543
No 166
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=24.48 E-value=30 Score=38.74 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=30.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC-----C---CCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR-----N---TCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~-----n---TCPVCR~ 454 (476)
...|.||+..-..---+.+=.|.-.||..|+.+=|.+. + .|.-|-+
T Consensus 544 ~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 544 NYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred ceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 45799999763321122233488889999999988541 1 4999943
No 167
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=23.68 E-value=46 Score=32.87 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=18.4
Q ss_pred ccchhhccccCCCCceEEeCCCCcc
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRY 434 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiF 434 (476)
..||||...+.........+++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 3699999999765554445567888
No 168
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=23.37 E-value=42 Score=28.15 Aligned_cols=13 Identities=23% Similarity=0.810 Sum_probs=9.2
Q ss_pred ccchhhHHHHHhC
Q 036764 433 RYHGECIVPWLRI 445 (476)
Q Consensus 433 iFH~~CI~~WL~~ 445 (476)
-||+.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999963
No 169
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.41 E-value=1e+02 Score=28.02 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=32.4
Q ss_pred ccchhhccccCCCC-----------ceEEeCCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGE-----------KAKRLPCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~ge-----------kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
..|--|+..|.... .-+.-.|++.||.+|=.-+-..-..||-|..
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 35999998875421 1123349999999998887777778999953
No 170
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=52 Score=37.93 Aligned_cols=45 Identities=36% Similarity=0.668 Sum_probs=32.6
Q ss_pred cchhhccccCCCCceEEeCCCC-ccchhhHHHHHh--C----CCCCCCcCCCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSH-RYHGECIVPWLR--I----RNTCPVCRYEMPT 458 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgH-iFH~~CI~~WL~--~----~nTCPVCR~eLpt 458 (476)
.|+||-..+.. ++.-.|+| .-|..|..+... . .+.||+||..+.+
T Consensus 2 ~c~ic~~s~~~---~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDF---VGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccc---cccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 49999877542 44456999 999999987653 2 4568999986643
No 171
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=21.61 E-value=82 Score=38.08 Aligned_cols=48 Identities=27% Similarity=0.475 Sum_probs=32.2
Q ss_pred cccchhhccccCCCCc----eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eL 456 (476)
...|.||-+.+..... +.+--|+--.|+.|..-=.+ .++.||.|++..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRY 67 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCch
Confidence 4579999998754331 33334777899999843222 366899998654
No 172
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=21.19 E-value=43 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.527 Sum_probs=21.2
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVP 441 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~ 441 (476)
...|.+|.......-.-..-.|.-.||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 457999997633211222223899999999765
No 173
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.08 E-value=69 Score=36.46 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=27.1
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----C--CCCCCcCCCCCCCChH
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----R--NTCPVCRYEMPTDDID 462 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~--nTCPVCR~eLptdd~e 462 (476)
..|+|++-.+.. .++...|+|+=|..- .|+.. . -.||+|.+.....+..
T Consensus 307 L~CPl~~~Rm~~--P~r~~~CkHlQcFD~--~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 307 LNCPLSKMRMSL--PARGHTCKHLQCFDA--LSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred ecCCcccceeec--CCcccccccceecch--hhhHHhccCCCeeeCccCCccccccchh
Confidence 469998866543 233334554444332 23321 1 1499998877766544
No 174
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.00 E-value=27 Score=33.07 Aligned_cols=48 Identities=25% Similarity=0.553 Sum_probs=27.6
Q ss_pred Ccccchhhccc-cCCCCceEEeCCCCccchhhHHHHHhCCC----CCCCcCCC
Q 036764 408 NNAICAVCKDE-FGVGEKAKRLPCSHRYHGECIVPWLRIRN----TCPVCRYE 455 (476)
Q Consensus 408 ed~eCaICLEe-f~~gekvr~LPCgHiFH~~CI~~WL~~~n----TCPVCR~e 455 (476)
.+..|.||+.. |..|..-.+.=|.-.||..|--+--.+++ .|-+||+.
T Consensus 64 ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 64 DDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 45689999875 44443333333556666667544332222 48888763
No 175
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=20.85 E-value=28 Score=38.35 Aligned_cols=45 Identities=29% Similarity=0.562 Sum_probs=29.8
Q ss_pred cccchhhccccCCCCceEEe---CCCCccchhhHHHHHhC--------CCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL---PCSHRYHGECIVPWLRI--------RNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L---PCgHiFH~~CI~~WL~~--------~nTCPVCR~ 454 (476)
...|++|.......-. +.| .|...||..|.++-... .--|-+|+.
T Consensus 168 n~qc~vC~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred cceeeeeecCCcCccc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 4569999966432222 444 38899999998876542 114999965
No 176
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.57 E-value=65 Score=22.69 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.1
Q ss_pred CCCCCCCcCC
Q 036764 445 IRNTCPVCRY 454 (476)
Q Consensus 445 ~~nTCPVCR~ 454 (476)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447999965
Done!