Query 036764
Match_columns 476
No_of_seqs 197 out of 1594
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 08:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 1.8E-16 6.2E-21 130.3 6.8 79 380-458 10-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3.2E-16 1.1E-20 123.5 4.7 72 388-459 2-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.4 8.8E-14 3E-18 102.8 4.7 49 409-457 5-54 (55)
4 2ect_A Ring finger protein 126 99.4 1.7E-13 5.7E-18 108.2 5.6 54 408-461 14-67 (78)
5 2kiz_A E3 ubiquitin-protein li 99.4 1.6E-13 5.3E-18 106.1 5.2 53 408-460 13-65 (69)
6 2ep4_A Ring finger protein 24; 99.4 2.8E-13 9.7E-18 105.9 4.3 51 409-459 15-65 (74)
7 2ecm_A Ring finger and CHY zin 99.3 9.6E-13 3.3E-17 97.0 4.8 49 409-457 5-54 (55)
8 1v87_A Deltex protein 2; ring- 99.3 1.6E-12 5.5E-17 109.4 5.5 50 409-458 25-94 (114)
9 2ecl_A Ring-box protein 2; RNF 99.3 1.2E-12 4.2E-17 105.6 3.1 51 409-459 15-77 (81)
10 3ng2_A RNF4, snurf, ring finge 99.3 1.1E-12 3.8E-17 101.1 2.6 54 408-461 9-66 (71)
11 2ea6_A Ring finger protein 4; 99.3 2.5E-12 8.5E-17 98.2 4.1 51 408-458 14-68 (69)
12 2xeu_A Ring finger protein 4; 99.3 1.5E-12 5E-17 98.1 2.6 53 409-461 3-59 (64)
13 3dpl_R Ring-box protein 1; ubi 99.2 3.6E-12 1.2E-16 109.2 4.7 50 408-457 36-100 (106)
14 1chc_A Equine herpes virus-1 r 99.2 6.6E-12 2.3E-16 96.4 3.9 48 409-458 5-52 (68)
15 2ct2_A Tripartite motif protei 99.2 1.4E-11 4.7E-16 98.4 5.2 54 408-461 14-71 (88)
16 2djb_A Polycomb group ring fin 99.2 1.6E-11 5.4E-16 96.0 5.1 51 408-461 14-65 (72)
17 2ecn_A Ring finger protein 141 99.2 2.6E-12 8.9E-17 99.4 0.5 50 408-461 14-63 (70)
18 4ayc_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 108.9 4.1 49 409-460 53-101 (138)
19 2d8t_A Dactylidin, ring finger 99.2 1.1E-11 3.8E-16 96.7 3.7 48 408-458 14-61 (71)
20 2ysl_A Tripartite motif-contai 99.1 2.8E-11 9.7E-16 93.9 5.0 51 408-461 19-72 (73)
21 4a0k_B E3 ubiquitin-protein li 99.1 6.4E-12 2.2E-16 110.0 0.5 50 408-457 47-111 (117)
22 2ecy_A TNF receptor-associated 99.1 2.4E-11 8.3E-16 93.3 3.6 50 408-460 14-64 (66)
23 2csy_A Zinc finger protein 183 99.1 4.1E-11 1.4E-15 95.4 5.0 47 408-457 14-60 (81)
24 1t1h_A Gspef-atpub14, armadill 99.1 3.8E-11 1.3E-15 94.7 4.2 50 408-460 7-57 (78)
25 2yur_A Retinoblastoma-binding 99.1 5.3E-11 1.8E-15 93.9 4.9 50 408-460 14-66 (74)
26 2ecw_A Tripartite motif-contai 99.1 6.4E-11 2.2E-15 93.3 4.6 50 408-460 18-73 (85)
27 2d8s_A Cellular modulator of i 99.1 5.8E-11 2E-15 97.0 4.0 52 408-460 14-72 (80)
28 3lrq_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 100.4 2.5 49 409-460 22-72 (100)
29 4ap4_A E3 ubiquitin ligase RNF 99.1 4.8E-11 1.6E-15 100.9 3.1 54 408-461 6-63 (133)
30 2ecv_A Tripartite motif-contai 99.1 7.2E-11 2.5E-15 93.0 3.5 50 408-460 18-73 (85)
31 2egp_A Tripartite motif-contai 99.0 3.3E-11 1.1E-15 94.6 1.3 50 408-460 11-67 (79)
32 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.6E-15 100.1 3.9 47 409-458 52-99 (124)
33 2y43_A E3 ubiquitin-protein li 99.0 1.2E-10 4E-15 96.1 3.9 48 409-459 22-70 (99)
34 2ckl_A Polycomb group ring fin 99.0 1.9E-10 6.5E-15 96.4 4.9 49 408-459 14-63 (108)
35 1g25_A CDK-activating kinase a 99.0 2.1E-10 7.2E-15 87.8 4.0 53 409-461 3-58 (65)
36 3ztg_A E3 ubiquitin-protein li 99.0 2.9E-10 1E-14 92.2 5.1 47 408-457 12-61 (92)
37 1jm7_A BRCA1, breast cancer ty 99.0 1.5E-10 5.3E-15 96.3 2.9 49 409-460 21-72 (112)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 9.5E-11 3.2E-15 99.0 1.5 53 408-460 71-127 (133)
39 2ysj_A Tripartite motif-contai 98.9 5.3E-10 1.8E-14 84.9 4.4 42 408-452 19-63 (63)
40 2ckl_B Ubiquitin ligase protei 98.9 4.5E-10 1.5E-14 100.6 4.5 47 409-458 54-102 (165)
41 2ct0_A Non-SMC element 1 homol 98.9 3.3E-10 1.1E-14 92.1 2.7 52 409-462 15-68 (74)
42 1z6u_A NP95-like ring finger p 98.9 5.6E-10 1.9E-14 100.1 4.4 48 409-459 78-126 (150)
43 2kr4_A Ubiquitin conjugation f 98.9 5.9E-10 2E-14 91.1 3.3 50 408-460 13-62 (85)
44 2kre_A Ubiquitin conjugation f 98.9 8E-10 2.7E-14 93.3 4.0 51 408-461 28-78 (100)
45 3hct_A TNF receptor-associated 98.9 5.3E-10 1.8E-14 95.4 2.7 50 408-460 17-67 (118)
46 3l11_A E3 ubiquitin-protein li 98.9 2.8E-10 9.4E-15 96.2 0.6 46 409-457 15-61 (115)
47 2ecj_A Tripartite motif-contai 98.9 8E-10 2.7E-14 81.9 3.0 42 408-452 14-58 (58)
48 1wgm_A Ubiquitin conjugation f 98.9 1.3E-09 4.3E-14 91.8 4.4 51 408-461 21-72 (98)
49 1rmd_A RAG1; V(D)J recombinati 98.9 8.6E-10 2.9E-14 93.3 3.0 49 409-460 23-72 (116)
50 2c2l_A CHIP, carboxy terminus 98.8 2E-09 6.7E-14 101.3 3.8 50 408-460 207-257 (281)
51 3knv_A TNF receptor-associated 98.8 9.7E-10 3.3E-14 97.7 1.1 48 408-458 30-78 (141)
52 2y1n_A E3 ubiquitin-protein li 98.7 4.8E-09 1.6E-13 108.0 4.9 47 409-458 332-379 (389)
53 1jm7_B BARD1, BRCA1-associated 98.7 1.7E-09 5.9E-14 92.0 1.0 47 409-460 22-69 (117)
54 1e4u_A Transcriptional repress 98.7 3.2E-09 1.1E-13 86.1 2.5 54 408-462 10-66 (78)
55 2vje_A E3 ubiquitin-protein li 98.7 7E-09 2.4E-13 80.5 3.5 46 409-457 8-56 (64)
56 1bor_A Transcription factor PM 98.7 5.1E-09 1.8E-13 78.9 1.4 46 408-459 5-50 (56)
57 2vje_B MDM4 protein; proto-onc 98.6 1E-08 3.5E-13 79.4 3.0 46 409-457 7-55 (63)
58 4ic3_A E3 ubiquitin-protein li 98.6 7.2E-09 2.5E-13 82.2 2.0 43 409-458 24-67 (74)
59 2yu4_A E3 SUMO-protein ligase 98.6 9.9E-09 3.4E-13 85.0 2.3 49 408-459 6-64 (94)
60 3hcs_A TNF receptor-associated 98.6 1.6E-08 5.5E-13 90.8 2.6 49 408-459 17-66 (170)
61 2f42_A STIP1 homology and U-bo 98.5 3.2E-08 1.1E-12 92.3 3.5 50 408-460 105-155 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.5 2.1E-08 7.2E-13 102.4 0.1 52 408-459 307-374 (381)
63 2ecg_A Baculoviral IAP repeat- 98.4 3.6E-08 1.2E-12 78.1 0.9 44 409-459 25-69 (75)
64 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.6E-07 5.6E-12 72.8 3.2 48 408-458 5-59 (60)
65 1wim_A KIAA0161 protein; ring 98.3 9.7E-08 3.3E-12 78.3 0.9 51 408-458 4-66 (94)
66 2ea5_A Cell growth regulator w 98.3 3.3E-07 1.1E-11 72.2 3.7 44 408-458 14-58 (68)
67 2bay_A PRE-mRNA splicing facto 98.3 1.6E-07 5.6E-12 72.9 1.8 49 410-461 4-53 (61)
68 2yho_A E3 ubiquitin-protein li 98.3 1.5E-07 5.1E-12 76.0 1.3 43 409-458 18-61 (79)
69 3t6p_A Baculoviral IAP repeat- 98.2 3E-07 1E-11 93.0 2.5 43 409-458 295-338 (345)
70 3htk_C E3 SUMO-protein ligase 98.2 3E-07 1E-11 90.7 1.6 52 408-461 180-235 (267)
71 3vk6_A E3 ubiquitin-protein li 97.7 1.9E-05 6.7E-10 67.9 3.8 46 411-458 3-49 (101)
72 3nw0_A Non-structural maintena 97.6 1.6E-05 5.5E-10 76.6 1.9 51 409-461 180-232 (238)
73 2ko5_A Ring finger protein Z; 94.0 0.015 5.2E-07 49.8 1.1 47 409-460 28-75 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 92.6 0.046 1.6E-06 44.7 2.0 35 409-443 3-38 (101)
75 2lri_C Autoimmune regulator; Z 91.5 0.097 3.3E-06 41.3 2.6 46 409-457 12-61 (66)
76 2lv9_A Histone-lysine N-methyl 91.1 0.099 3.4E-06 43.9 2.4 45 410-455 29-76 (98)
77 3lqh_A Histone-lysine N-methyl 83.7 0.54 1.9E-05 43.8 2.7 49 410-458 3-66 (183)
78 3m62_A Ubiquitin conjugation f 81.5 0.87 3E-05 52.0 3.8 50 408-460 890-940 (968)
79 1wil_A KIAA1045 protein; ring 81.2 0.86 2.9E-05 38.4 2.7 34 408-442 14-47 (89)
80 1f62_A Transcription factor WS 80.7 0.67 2.3E-05 33.9 1.7 44 411-454 2-49 (51)
81 3o36_A Transcription intermedi 80.0 0.49 1.7E-05 43.1 0.9 45 409-456 4-52 (184)
82 1we9_A PHD finger family prote 78.4 0.54 1.9E-05 35.9 0.6 48 408-455 5-58 (64)
83 2l5u_A Chromodomain-helicase-D 77.3 0.74 2.5E-05 35.4 1.1 44 408-454 10-57 (61)
84 3u5n_A E3 ubiquitin-protein li 76.7 0.54 1.8E-05 43.7 0.2 44 409-456 7-55 (207)
85 1mm2_A MI2-beta; PHD, zinc fin 74.1 1 3.5E-05 34.6 1.1 46 408-456 8-57 (61)
86 2k16_A Transcription initiatio 72.2 1.3 4.6E-05 34.7 1.4 47 408-455 17-68 (75)
87 2ysm_A Myeloid/lymphoid or mix 71.8 1.5 5.1E-05 36.8 1.7 46 408-453 6-55 (111)
88 2ro1_A Transcription intermedi 70.6 1 3.6E-05 41.5 0.5 43 410-455 3-49 (189)
89 2yql_A PHD finger protein 21A; 69.7 0.56 1.9E-05 35.2 -1.2 44 408-454 8-55 (56)
90 3i2d_A E3 SUMO-protein ligase 68.5 2.8 9.7E-05 43.1 3.2 50 410-461 250-303 (371)
91 1weu_A Inhibitor of growth fam 68.3 2.5 8.4E-05 35.5 2.3 44 409-456 36-86 (91)
92 4fo9_A E3 SUMO-protein ligase 68.0 3 0.0001 42.8 3.3 50 410-461 216-269 (360)
93 2kgg_A Histone demethylase jar 66.9 5.8 0.0002 29.3 3.9 43 411-453 4-52 (52)
94 1fp0_A KAP-1 corepressor; PHD 66.4 1.6 5.5E-05 36.4 0.8 47 408-457 24-74 (88)
95 3v43_A Histone acetyltransfera 63.8 2.9 9.7E-05 35.4 1.8 44 411-454 63-111 (112)
96 1xwh_A Autoimmune regulator; P 62.7 0.87 3E-05 35.4 -1.5 44 408-454 7-54 (66)
97 1wep_A PHF8; structural genomi 62.0 5.3 0.00018 31.8 3.0 46 410-456 13-64 (79)
98 2yt5_A Metal-response element- 61.5 1.3 4.4E-05 33.9 -0.7 50 408-457 5-63 (66)
99 2puy_A PHD finger protein 21A; 61.0 1 3.6E-05 34.1 -1.2 43 409-454 5-51 (60)
100 2lbm_A Transcriptional regulat 61.0 6.2 0.00021 35.5 3.6 44 408-454 62-116 (142)
101 1wen_A Inhibitor of growth fam 56.1 5.3 0.00018 31.7 2.0 44 409-456 16-66 (71)
102 2ri7_A Nucleosome-remodeling f 55.7 2.4 8.4E-05 37.8 0.0 45 409-454 8-58 (174)
103 2e6r_A Jumonji/ARID domain-con 55.3 0.91 3.1E-05 37.7 -2.6 46 409-454 16-65 (92)
104 2cs3_A Protein C14ORF4, MY039 55.0 17 0.00057 30.6 4.9 56 409-465 15-83 (93)
105 3v43_A Histone acetyltransfera 54.0 12 0.00042 31.5 4.1 32 409-440 5-42 (112)
106 2l43_A N-teminal domain from h 53.2 2 7E-05 35.3 -0.9 55 408-462 24-82 (88)
107 2xb1_A Pygopus homolog 2, B-ce 52.4 7.5 0.00026 32.9 2.5 48 410-457 4-63 (105)
108 2jmi_A Protein YNG1, ING1 homo 52.2 2 6.9E-05 35.9 -1.0 41 409-453 26-74 (90)
109 1weo_A Cellulose synthase, cat 51.4 13 0.00045 31.5 3.7 49 409-457 16-69 (93)
110 1wem_A Death associated transc 51.3 3 0.0001 32.9 -0.1 44 410-454 17-69 (76)
111 2vpb_A Hpygo1, pygopus homolog 51.0 10 0.00034 29.6 2.8 31 409-439 8-40 (65)
112 3ask_A E3 ubiquitin-protein li 50.0 3.6 0.00012 39.7 0.2 44 411-454 176-224 (226)
113 3o70_A PHD finger protein 13; 49.4 3.1 0.00011 32.7 -0.3 46 408-454 18-66 (68)
114 3shb_A E3 ubiquitin-protein li 49.0 3.4 0.00012 33.4 -0.1 43 411-454 28-76 (77)
115 2e6s_A E3 ubiquitin-protein li 46.7 5.2 0.00018 32.3 0.6 44 411-454 28-76 (77)
116 1wev_A Riken cDNA 1110020M19; 46.7 2.8 9.5E-05 34.4 -1.0 47 409-455 16-72 (88)
117 3asl_A E3 ubiquitin-protein li 45.2 5.5 0.00019 31.4 0.5 43 411-454 20-68 (70)
118 3ql9_A Transcriptional regulat 43.9 17 0.00057 32.3 3.5 43 408-454 56-110 (129)
119 2cu8_A Cysteine-rich protein 2 43.0 15 0.00051 28.0 2.7 41 409-459 9-49 (76)
120 2rsd_A E3 SUMO-protein ligase 42.7 1.9 6.5E-05 33.6 -2.5 44 410-454 11-64 (68)
121 1wew_A DNA-binding family prot 42.3 4.1 0.00014 32.5 -0.6 47 409-456 16-73 (78)
122 1iml_A CRIP, cysteine rich int 42.2 12 0.00039 28.6 1.9 41 410-454 28-69 (76)
123 2ku3_A Bromodomain-containing 41.3 6.2 0.00021 31.3 0.3 47 408-454 15-65 (71)
124 2ysm_A Myeloid/lymphoid or mix 41.0 3.7 0.00013 34.3 -1.1 45 411-455 56-104 (111)
125 2vnf_A ING 4, P29ING4, inhibit 40.5 5 0.00017 30.7 -0.4 41 410-454 11-58 (60)
126 3c6w_A P28ING5, inhibitor of g 40.2 5.4 0.00018 30.5 -0.3 41 410-454 10-57 (59)
127 1dvp_A HRS, hepatocyte growth 38.5 15 0.00052 34.1 2.5 34 409-442 161-195 (220)
128 1joc_A EEA1, early endosomal a 37.9 19 0.00064 31.3 2.8 34 409-442 69-103 (125)
129 3mpx_A FYVE, rhogef and PH dom 37.3 7 0.00024 39.0 0.0 35 409-443 375-410 (434)
130 2gmg_A Hypothetical protein PF 36.3 6.5 0.00022 34.0 -0.4 26 426-456 69-94 (105)
131 3zyq_A Hepatocyte growth facto 35.4 18 0.00061 34.1 2.4 35 409-443 164-199 (226)
132 2kwj_A Zinc finger protein DPF 35.4 12 0.00042 31.6 1.2 32 411-442 3-41 (114)
133 1x63_A Skeletal muscle LIM-pro 34.3 38 0.0013 25.9 3.8 41 410-459 16-56 (82)
134 3t7l_A Zinc finger FYVE domain 34.2 24 0.00083 28.8 2.8 34 410-443 21-55 (90)
135 2yw8_A RUN and FYVE domain-con 34.0 26 0.00089 28.0 2.9 34 409-442 19-53 (82)
136 1z60_A TFIIH basal transcripti 33.6 14 0.00049 28.7 1.2 43 410-452 16-58 (59)
137 1z2q_A LM5-1; membrane protein 33.5 28 0.00096 27.9 3.0 34 409-442 21-55 (84)
138 2d8v_A Zinc finger FYVE domain 33.3 16 0.00056 29.3 1.5 30 409-442 8-38 (67)
139 1y02_A CARP2, FYVE-ring finger 33.1 5.6 0.00019 34.8 -1.3 44 410-453 20-64 (120)
140 2co8_A NEDD9 interacting prote 32.8 33 0.0011 26.7 3.3 42 409-460 15-56 (82)
141 2dj7_A Actin-binding LIM prote 32.8 26 0.0009 27.3 2.7 39 409-457 15-53 (80)
142 1zbd_B Rabphilin-3A; G protein 32.1 17 0.00058 32.1 1.6 34 408-441 54-89 (134)
143 1vfy_A Phosphatidylinositol-3- 31.5 29 0.001 27.1 2.7 32 410-441 12-44 (73)
144 3kv4_A PHD finger protein 8; e 30.8 4.7 0.00016 42.3 -2.6 50 410-459 5-60 (447)
145 2kwj_A Zinc finger protein DPF 29.9 6.2 0.00021 33.5 -1.6 44 411-454 60-107 (114)
146 2g6q_A Inhibitor of growth pro 29.5 10 0.00035 29.2 -0.3 41 410-454 12-59 (62)
147 1x4k_A Skeletal muscle LIM-pro 29.4 44 0.0015 24.8 3.3 41 410-459 6-46 (72)
148 1wfk_A Zinc finger, FYVE domai 29.4 31 0.0011 28.2 2.7 34 409-442 9-43 (88)
149 1wyh_A SLIM 2, skeletal muscle 28.9 45 0.0015 24.8 3.3 41 410-459 6-46 (72)
150 3o7a_A PHD finger protein 13 v 28.5 8.9 0.00031 28.2 -0.7 41 414-454 8-51 (52)
151 1x4l_A Skeletal muscle LIM-pro 28.4 51 0.0017 24.6 3.5 40 410-458 6-47 (72)
152 2dar_A PDZ and LIM domain prot 28.1 48 0.0016 26.1 3.5 40 409-459 25-64 (90)
153 1x4u_A Zinc finger, FYVE domai 28.0 32 0.0011 27.5 2.4 33 409-441 14-47 (84)
154 3f6q_B LIM and senescent cell 27.3 41 0.0014 24.7 2.8 42 409-459 11-52 (72)
155 1x64_A Alpha-actinin-2 associa 26.5 51 0.0017 25.8 3.4 40 409-459 25-64 (89)
156 1x61_A Thyroid receptor intera 26.0 62 0.0021 24.0 3.6 40 410-458 6-45 (72)
157 2fiy_A Protein FDHE homolog; F 25.5 6.3 0.00021 39.4 -2.7 45 409-455 182-231 (309)
158 1nyp_A Pinch protein; LIM doma 25.3 49 0.0017 24.2 2.9 39 410-459 6-44 (66)
159 4gne_A Histone-lysine N-methyl 25.1 54 0.0018 28.0 3.5 44 408-457 14-64 (107)
160 1lko_A Rubrerythrin all-iron(I 24.9 24 0.00082 32.4 1.3 21 429-455 160-180 (191)
161 2d8y_A Eplin protein; LIM doma 24.2 55 0.0019 25.7 3.2 40 410-459 16-55 (91)
162 1x68_A FHL5 protein; four-and- 23.8 46 0.0016 25.2 2.6 40 410-458 6-47 (76)
163 1a7i_A QCRP2 (LIM1); LIM domai 23.6 22 0.00076 27.3 0.7 40 410-459 8-47 (81)
164 3pwf_A Rubrerythrin; non heme 23.5 31 0.0011 31.3 1.8 19 429-454 143-161 (170)
165 1g47_A Pinch protein; LIM doma 23.0 57 0.0019 24.5 2.9 42 409-459 11-52 (77)
166 2l3k_A Rhombotin-2, linker, LI 22.9 39 0.0013 28.3 2.2 12 431-442 57-68 (123)
167 2d8z_A Four and A half LIM dom 22.5 55 0.0019 24.2 2.7 38 410-458 6-43 (70)
168 3kv5_D JMJC domain-containing 22.4 17 0.0006 38.3 -0.2 44 410-454 38-87 (488)
169 3vhs_A ATPase wrnip1; zinc fin 22.4 20 0.00067 24.2 0.1 15 448-462 8-22 (29)
170 2zet_C Melanophilin; complex, 22.0 40 0.0014 30.4 2.1 46 408-454 67-116 (153)
171 1x62_A C-terminal LIM domain p 21.7 45 0.0015 25.6 2.1 38 409-457 15-52 (79)
172 1wee_A PHD finger family prote 21.6 49 0.0017 25.6 2.3 46 409-455 16-66 (72)
173 2jvx_A NF-kappa-B essential mo 21.2 19 0.00064 24.3 -0.1 11 448-458 5-15 (28)
174 2das_A Zinc finger MYM-type pr 20.9 72 0.0025 25.2 3.1 34 409-442 20-55 (62)
175 1m3v_A FLIN4, fusion of the LI 20.6 57 0.002 27.2 2.7 51 410-460 33-83 (122)
176 2d8x_A Protein pinch; LIM doma 20.2 66 0.0023 23.8 2.7 39 410-459 6-44 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=130.28 Aligned_cols=79 Identities=34% Similarity=0.828 Sum_probs=68.7
Q ss_pred hccCCCCCCHHHhhcceEEEeccccc-CCCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 380 AWMGQPPASRSVVENLTVVVLTQEDV-DGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 380 s~~g~pPASKsaIe~LPsv~vt~~dl-~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
......+++++.++.||.++++.... ......|+||++.|..+..++.|||+|.||..||.+|++.+.+||+||+.+++
T Consensus 10 ~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 10 HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34567789999999999999876543 23456799999999988889999999999999999999999999999999875
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-16 Score=123.47 Aligned_cols=72 Identities=26% Similarity=0.703 Sum_probs=62.5
Q ss_pred CHHHhhcceEEEecccccCCCcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 388 SRSVVENLTVVVLTQEDVDGNNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 388 SKsaIe~LPsv~vt~~dl~sed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
+.+.++.||..+++......+...|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||+.+.+.
T Consensus 2 s~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cHhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 346678899998876655556678999999999888889999999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.43 E-value=8.8e-14 Score=102.84 Aligned_cols=49 Identities=45% Similarity=1.010 Sum_probs=45.5
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|+||++.+..++.+..+| |+|.||..||.+|++.+.+||+||++++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 457999999999888889998 9999999999999999999999999875
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=1.7e-13 Score=108.22 Aligned_cols=54 Identities=41% Similarity=1.125 Sum_probs=48.5
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.|.....++.++|+|.||..||.+|++.+.+||+||+.+...+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 356899999999888888889999999999999999999999999999976544
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=106.06 Aligned_cols=53 Identities=32% Similarity=0.882 Sum_probs=47.6
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
....|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 35679999999988788999999999999999999999999999999987643
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-13 Score=105.89 Aligned_cols=51 Identities=31% Similarity=0.941 Sum_probs=46.5
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+||++.|..+..++.+||+|.||..||.+|++.+.+||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 567999999999888888899999999999999999999999999998643
No 7
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32 E-value=9.6e-13 Score=97.02 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=42.9
Q ss_pred cccchhhccccCCC-CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVG-EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~g-ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|+||++.+..+ ..++.++|+|.||..||.+|++.+.+||+||++++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45799999998643 45778899999999999999998899999999875
No 8
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.30 E-value=1.6e-12 Score=109.36 Aligned_cols=50 Identities=22% Similarity=0.568 Sum_probs=40.9
Q ss_pred cccchhhccccCCCC---------------ceEEeCCCCccchhhHHHHH-----hCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGE---------------KAKRLPCSHRYHGECIVPWL-----RIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~ge---------------kvr~LPCgHiFH~~CI~~WL-----~~~nTCPVCR~eLpt 458 (476)
+..|+||++.|.... .++.++|+|.||..||.+|+ ..+.+||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 457999999986543 34478899999999999999 456789999998754
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.2e-12 Score=105.64 Aligned_cols=51 Identities=24% Similarity=0.698 Sum_probs=40.9
Q ss_pred cccchhhccccC-----------CCCceEEeC-CCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFG-----------VGEKAKRLP-CSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~-----------~gekvr~LP-CgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
+..|+||++.|. .++.++.++ |+|.||..||.+||+.+++||+||+++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 345777777774 344466666 999999999999999999999999988643
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=1.1e-12 Score=101.14 Aligned_cols=54 Identities=26% Similarity=0.661 Sum_probs=45.6
Q ss_pred CcccchhhccccCC----CCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGV----GEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~----gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
+...|+||++.+.. +..+..++|+|.||..||.+|++.+.+||+||+.+...++
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 35679999999864 2445788999999999999999999999999999976543
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.5e-12 Score=98.19 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=43.5
Q ss_pred CcccchhhccccCCC----CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVG----EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~g----ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
....|+||++.|... ..+..++|+|.||..||.+|++.+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 356799999998642 334788999999999999999999999999999864
No 12
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.5e-12 Score=98.11 Aligned_cols=53 Identities=25% Similarity=0.584 Sum_probs=45.1
Q ss_pred cccchhhccccCCC----CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVG----EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~g----ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
...|+||++.+... ..+..++|+|.||..||.+|++.+.+||+||+++...++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 45799999998642 345788999999999999999999999999999986553
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24 E-value=3.6e-12 Score=109.19 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=42.7
Q ss_pred CcccchhhccccCCCC---------------ceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGE---------------KAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~ge---------------kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
.+..|+||++.|.... .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567999999987541 3677899999999999999999999999999864
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.21 E-value=6.6e-12 Score=96.41 Aligned_cols=48 Identities=29% Similarity=0.799 Sum_probs=42.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
...|+||++.+.. .++.+||+|.||..||.+|++.+.+||+||+.+..
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 4579999999853 45789999999999999999999999999998864
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-11 Score=98.39 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=45.7
Q ss_pred CcccchhhccccCCCCc-eEEeCCCCccchhhHHHHHhCC---CCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLRIR---NTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~~~---nTCPVCR~eLptdd~ 461 (476)
+...|+||++.|..... ++.++|+|.||..||.+|++.+ .+||+||+.+...++
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 35679999999986554 7889999999999999999875 789999998876543
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=96.04 Aligned_cols=51 Identities=25% Similarity=0.591 Sum_probs=43.6
Q ss_pred CcccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.+.. +..+ +|+|.||..||.+|++.+.+||+||+.+...++
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 35679999999864 4555 899999999999999989999999999976654
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.6e-12 Score=99.40 Aligned_cols=50 Identities=30% Similarity=0.792 Sum_probs=43.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.+.. +.+||+|.||..||.+|+..+.+||+||+.+...+.
T Consensus 14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 35679999999864 779999999999999999999999999999986543
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=1e-11 Score=108.90 Aligned_cols=49 Identities=29% Similarity=0.817 Sum_probs=43.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
...|+||++.|.. +..+||+|.||..||..|+..+.+||+||+++....
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4579999999864 678999999999999999999999999999997653
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=96.67 Aligned_cols=48 Identities=27% Similarity=0.609 Sum_probs=42.3
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
....|+||++.+.. ++.+||+|.||..||.+|++.+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 35679999999854 6778999999999999999999999999998864
No 20
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=2.8e-11 Score=93.86 Aligned_cols=51 Identities=24% Similarity=0.587 Sum_probs=42.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh---CCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR---IRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~---~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.+.. +..++|+|.||..||.+|++ ...+||+||+.+...++
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 35689999999863 67789999999999999996 45689999999976543
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.13 E-value=6.4e-12 Score=109.96 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=0.9
Q ss_pred CcccchhhccccCCCC---------------ceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGE---------------KAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~ge---------------kvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
.+..|+||++.|.... .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3568999999986421 2334589999999999999999999999999764
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.4e-11 Score=93.30 Aligned_cols=50 Identities=22% Similarity=0.571 Sum_probs=41.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLptdd 460 (476)
+...|+||++.+.. +..++|+|.||..||.+|+. ...+||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 35679999999864 34489999999999999994 5678999999997654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.1e-11 Score=95.44 Aligned_cols=47 Identities=19% Similarity=0.499 Sum_probs=41.8
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
....|+||++.|.. +..++|+|.||..||.+|++...+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35679999999854 667999999999999999998999999999986
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.11 E-value=3.8e-11 Score=94.67 Aligned_cols=50 Identities=16% Similarity=0.342 Sum_probs=43.1
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd 460 (476)
+...|+||++.|.. +..++|+|.||..||.+|+.. +.+||+||+++...+
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 35689999999864 677899999999999999987 788999999987543
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.11 E-value=5.3e-11 Score=93.87 Aligned_cols=50 Identities=34% Similarity=0.722 Sum_probs=41.8
Q ss_pred CcccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCC--CCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIR--NTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~--nTCPVCR~eLptdd 460 (476)
....|+||++.|.. +..++ |+|.||..||..|++.+ .+||+||+++...+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35679999999864 66799 99999999999999765 68999999865443
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=6.4e-11 Score=93.29 Aligned_cols=50 Identities=24% Similarity=0.656 Sum_probs=42.7
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC------CCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI------RNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~------~nTCPVCR~eLptdd 460 (476)
....|+||++.+.. +..++|+|.||..||..|+.. ..+||+||+.+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 35679999999864 557899999999999999987 678999999997654
No 27
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=5.8e-11 Score=97.05 Aligned_cols=52 Identities=27% Similarity=0.724 Sum_probs=43.2
Q ss_pred CcccchhhccccCCCCceEEeCCC-----CccchhhHHHHHhCC--CCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCS-----HRYHGECIVPWLRIR--NTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCg-----HiFH~~CI~~WL~~~--nTCPVCR~eLptdd 460 (476)
....|+||++++..++.. .+||+ |.||..||.+||..+ .+||+||+.+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 356799999999876655 68996 999999999999865 48999999987543
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.07 E-value=3.3e-11 Score=100.43 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=42.2
Q ss_pred cccchhhccccCCCCceEE-eCCCCccchhhHHHHHhCC-CCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKR-LPCSHRYHGECIVPWLRIR-NTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~-LPCgHiFH~~CI~~WL~~~-nTCPVCR~eLptdd 460 (476)
...|+||++.|.. ++. ++|+|.||..||.+|+... .+||+||+++...+
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 4679999999863 566 8999999999999999877 69999999987543
No 29
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=4.8e-11 Score=100.85 Aligned_cols=54 Identities=24% Similarity=0.592 Sum_probs=45.8
Q ss_pred CcccchhhccccCCC----CceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVG----EKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~g----ekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
+...|+||++.|... ..++.++|+|.||..||.+|++.+.+||+||+.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 456899999998642 345889999999999999999999999999999976544
No 30
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=7.2e-11 Score=92.99 Aligned_cols=50 Identities=22% Similarity=0.680 Sum_probs=42.5
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC------CCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI------RNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~------~nTCPVCR~eLptdd 460 (476)
+...|+||++.+.. +..++|+|.||..||..|+.. ..+||+||+.+...+
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 35679999999864 456899999999999999977 778999999987654
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=3.3e-11 Score=94.60 Aligned_cols=50 Identities=22% Similarity=0.582 Sum_probs=42.3
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-------CCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-------RNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-------~nTCPVCR~eLptdd 460 (476)
+...|+||++.|.. ++.+||+|.||..||.+|+.. ..+||+||+.+...+
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 35679999999864 455899999999999999976 568999999997643
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.03 E-value=1.1e-10 Score=100.13 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=41.0
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC-CCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN-TCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n-TCPVCR~eLpt 458 (476)
...|+||++.|.. +..+||+|.||..||..|+..+. +||+||+.+..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999999874 67789999999999999998544 89999999976
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=96.08 Aligned_cols=48 Identities=29% Similarity=0.718 Sum_probs=41.8
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+||++.|.. +..+ +|+|.||..||.+|+..+.+||+||+.+...
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 4579999999864 5566 8999999999999999889999999998753
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=1.9e-10 Score=96.36 Aligned_cols=49 Identities=27% Similarity=0.708 Sum_probs=42.7
Q ss_pred CcccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
....|+||++.|.. +..+ +|+|.||..||..|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 35679999999864 5565 9999999999999999999999999998764
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=2.1e-10 Score=87.81 Aligned_cols=53 Identities=17% Similarity=0.414 Sum_probs=42.0
Q ss_pred cccchhhcc-ccCCCCc-eEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCCh
Q 036764 409 NAICAVCKD-EFGVGEK-AKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLE-ef~~gek-vr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd~ 461 (476)
+..|+||++ .+..... ...++|||.||..||.+|+.. ..+||+||+.+...++
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 457999999 6655433 245799999999999999754 5689999999976654
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.99 E-value=2.9e-10 Score=92.15 Aligned_cols=47 Identities=34% Similarity=0.729 Sum_probs=40.3
Q ss_pred CcccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCC--CCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIR--NTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~--nTCPVCR~eLp 457 (476)
....|+||++.|.. +..+| |+|.||..||..|+... .+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45689999999864 67899 99999999999999643 58999999973
No 37
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=1.5e-10 Score=96.34 Aligned_cols=49 Identities=18% Similarity=0.586 Sum_probs=41.2
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC---CCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN---TCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n---TCPVCR~eLptdd 460 (476)
...|+||++.+.. +..+||+|.||..||..|+..+. +||+||..+...+
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 4579999999864 45589999999999999998654 8999999987654
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.97 E-value=9.5e-11 Score=99.03 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=45.0
Q ss_pred CcccchhhccccCC----CCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGV----GEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~----gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
....|+||++.+.. ...++.++|+|.||..||.+|++.+++||+||+.+...+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 45679999999864 233478899999999999999999999999999997654
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5.3e-10 Score=84.88 Aligned_cols=42 Identities=26% Similarity=0.651 Sum_probs=36.3
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh---CCCCCCCc
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR---IRNTCPVC 452 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~---~~nTCPVC 452 (476)
....|+||++.+.. ++.++|+|.||..||.+|++ ...+||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35689999999864 67789999999999999997 45689998
No 40
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.94 E-value=4.5e-10 Score=100.58 Aligned_cols=47 Identities=30% Similarity=0.795 Sum_probs=40.4
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHHHhC-CCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRI-RNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~-~nTCPVCR~eLpt 458 (476)
...|+||++.|.. +..+ +|+|.||..||.+|+.. +.+||+||..+..
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4579999999874 4555 99999999999999987 7789999999854
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.3e-10 Score=92.07 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=42.9
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC--CCCCCcCCCCCCCChH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR--NTCPVCRYEMPTDDID 462 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~--nTCPVCR~eLptdd~e 462 (476)
...|+||++.+..+. +...|+|.||..||.+||+.+ .+||+||++.+....+
T Consensus 15 i~~C~IC~~~i~~g~--~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSSE--ECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccCC--ccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence 457999999997643 334799999999999999887 8999999998765543
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=100.11 Aligned_cols=48 Identities=19% Similarity=0.581 Sum_probs=41.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC-CCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN-TCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n-TCPVCR~eLptd 459 (476)
...|+||++.|.. +..+||+|.||..||..|+.... +||+||..+...
T Consensus 78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4579999999864 66799999999999999998755 899999999865
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.89 E-value=5.9e-10 Score=91.07 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=44.3
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
....|+||++.|.. +..++|||.|++.||.+|+..+.+||+||.++...+
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 35679999999975 788999999999999999998899999999987654
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.89 E-value=8e-10 Score=93.31 Aligned_cols=51 Identities=16% Similarity=0.106 Sum_probs=45.0
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.|.. +..+||||.||+.||.+||..+.+||+||.++...++
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 35679999999975 7889999999999999999988999999999987653
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.88 E-value=5.3e-10 Score=95.36 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=42.7
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC-CCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN-TCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n-TCPVCR~eLptdd 460 (476)
+...|+||++.+.. +..++|+|.||..||.+|+.... +||+||+.+....
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 35689999999864 57789999999999999998755 9999999997643
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=2.8e-10 Score=96.19 Aligned_cols=46 Identities=24% Similarity=0.631 Sum_probs=40.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLp 457 (476)
...|+||++.+.. ++.++|+|.||..||.+|+.. ..+||+||+.+.
T Consensus 15 ~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 5679999999864 677899999999999999976 668999999885
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8e-10 Score=81.88 Aligned_cols=42 Identities=31% Similarity=0.793 Sum_probs=35.3
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh---CCCCCCCc
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR---IRNTCPVC 452 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~---~~nTCPVC 452 (476)
....|+||++.+.. ++.++|+|.||..||.+|+. .+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35679999999865 45589999999999999954 56789998
No 48
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.86 E-value=1.3e-09 Score=91.77 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=44.8
Q ss_pred CcccchhhccccCCCCceEEeCCC-CccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCS-HRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCg-HiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
....|+||++.|.. ++.++|+ |.|++.||.+||..+.+||+||.++...++
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 35679999999975 7789999 999999999999988899999999986643
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.85 E-value=8.6e-10 Score=93.29 Aligned_cols=49 Identities=27% Similarity=0.689 Sum_probs=42.2
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd 460 (476)
...|+||++.+.. +..++|+|.||..||.+|+.. ..+||+||+.+...+
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 4579999999864 666899999999999999986 778999999987543
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=2e-09 Score=101.27 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=42.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC-CCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-RNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-~nTCPVCR~eLptdd 460 (476)
....|+||++.|.. ++.+||||.||..||.+|+.. +.+||+||.+++..+
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 35679999999875 778999999999999999976 445999999997543
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=9.7e-10 Score=97.75 Aligned_cols=48 Identities=23% Similarity=0.545 Sum_probs=40.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC-CCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN-TCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n-TCPVCR~eLpt 458 (476)
+...|+||++.+.. +..++|+|.||..||.+|++... +||+||+++..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45689999999864 56789999999999999998655 89999998743
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=4.8e-09 Score=108.03 Aligned_cols=47 Identities=28% Similarity=0.746 Sum_probs=41.5
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLpt 458 (476)
...|+||++.+. .++.+||+|.||..||..|+. .+.+||+||+++..
T Consensus 332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 358999999975 478899999999999999998 68899999998864
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=1.7e-09 Score=92.05 Aligned_cols=47 Identities=23% Similarity=0.537 Sum_probs=40.0
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
...|+||++.|.. +..+ +|+|.||..||..|+. .+||+||+.+...+
T Consensus 22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~ 69 (117)
T 1jm7_B 22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQD 69 (117)
T ss_dssp TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSS
T ss_pred CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcccc
Confidence 4579999999864 5667 8999999999999987 78999999986543
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.73 E-value=3.2e-09 Score=86.11 Aligned_cols=54 Identities=19% Similarity=0.461 Sum_probs=41.8
Q ss_pred CcccchhhccccCCCCceEEe--CCCCccchhhHHHHHh-CCCCCCCcCCCCCCCChH
Q 036764 408 NNAICAVCKDEFGVGEKAKRL--PCSHRYHGECIVPWLR-IRNTCPVCRYEMPTDDID 462 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~L--PCgHiFH~~CI~~WL~-~~nTCPVCR~eLptdd~e 462 (476)
+...|+||++.+.... ++.+ +|||.||..||..++. ....||+||+.+......
T Consensus 10 ~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred cCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 4568999999886432 2334 4999999999999985 356899999999876554
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.70 E-value=7e-09 Score=80.53 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=39.4
Q ss_pred cccchhhccccCCCCceEEe--CCCCc-cchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL--PCSHR-YHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L--PCgHi-FH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|+||++.+.. +..+ ||+|. ||..|+..|++.+..||+||+++.
T Consensus 8 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred cCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4579999998653 4545 99999 899999999998899999999885
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=5.1e-09 Score=78.90 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=38.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
+...|+||++.|.. ++.|||+|.||..||.+| ..+||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 35679999999874 567899999999999884 66899999988653
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.65 E-value=1e-08 Score=79.39 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=39.0
Q ss_pred cccchhhccccCCCCceEEe--CCCCc-cchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL--PCSHR-YHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L--PCgHi-FH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|.||++.... +..+ ||+|. ||..|+.+|.+...+||+||+++.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4579999998643 4445 99998 999999999988889999999885
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.64 E-value=7.2e-09 Score=82.17 Aligned_cols=43 Identities=23% Similarity=0.603 Sum_probs=37.4
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
...|+||++.+.. +..+||+|. ||..|+..| .+||+||+.+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 4579999998753 778899999 999999998 789999998864
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=9.9e-09 Score=84.98 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=40.2
Q ss_pred CcccchhhccccCCCCceEEeC-CCCccchhhHHHHHhCC------CCCCC--cCCC-CCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPWLRIR------NTCPV--CRYE-MPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~WL~~~------nTCPV--CR~e-Lptd 459 (476)
....|+||++.|.. ++.+| |+|.|++.||.+||..+ .+||+ |++. +...
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 35679999999874 77786 99999999999999753 48999 9876 6543
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.58 E-value=1.6e-08 Score=90.76 Aligned_cols=49 Identities=27% Similarity=0.592 Sum_probs=42.0
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC-CCCCCcCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR-NTCPVCRYEMPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~-nTCPVCR~eLptd 459 (476)
+...|+||++.+.. +..++|+|.||..||.+|+... .+||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45789999999864 5678999999999999999764 4999999998764
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.54 E-value=3.2e-08 Score=92.30 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=42.7
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC-CCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR-NTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~-nTCPVCR~eLptdd 460 (476)
....|+||++.|.. +..+||||.||..||.+|+..+ .+||+||.++...+
T Consensus 105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence 35679999999975 7788999999999999999764 47999999997654
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.46 E-value=2.1e-08 Score=102.44 Aligned_cols=52 Identities=21% Similarity=0.614 Sum_probs=39.7
Q ss_pred CcccchhhccccCCCCce-----EEeCCCCccchhhHHHHHhCC-----------CCCCCcCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKA-----KRLPCSHRYHGECIVPWLRIR-----------NTCPVCRYEMPTD 459 (476)
Q Consensus 408 ed~eCaICLEef~~gekv-----r~LPCgHiFH~~CI~~WL~~~-----------nTCPVCR~eLptd 459 (476)
...+|+||+..+..+... ...+|+|.||..||.+||+.. ++||+||++++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999998762221 123699999999999999752 4699999988643
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=3.6e-08 Score=78.06 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=36.4
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+||++.+.. +..+||+|. ||..|+.. ...||+||+++...
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 4579999998753 667899999 99999965 37899999998764
No 64
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.37 E-value=1.6e-07 Score=72.83 Aligned_cols=48 Identities=27% Similarity=0.807 Sum_probs=37.3
Q ss_pred CcccchhhccccCCCCceEEeCCC--C---ccchhhHHHHHhC--CCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCS--H---RYHGECIVPWLRI--RNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCg--H---iFH~~CI~~WL~~--~nTCPVCR~eLpt 458 (476)
+...|.||+++.. .. ..+||. + .||..||.+|+.. +.+||+||+++..
T Consensus 5 ~~~~CrIC~~~~~--~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELG--NE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECS--CC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCC--Cc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3457999999842 33 358965 4 9999999999964 5789999998764
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.32 E-value=9.7e-08 Score=78.30 Aligned_cols=51 Identities=18% Similarity=0.547 Sum_probs=39.6
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC--------CCCCCC--cCCC--CCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI--------RNTCPV--CRYE--MPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~--------~nTCPV--CR~e--Lpt 458 (476)
+...|+||++.+.........+|+|.||..|+..++.. ..+||. ||.. ++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 35579999999875444444579999999999999963 237999 9998 654
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.3e-07 Score=72.16 Aligned_cols=44 Identities=30% Similarity=0.639 Sum_probs=36.9
Q ss_pred CcccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
....|.||++... .+..+||+|. ||..|+.. ...||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3567999999864 4788999999 99999984 4789999998865
No 67
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.31 E-value=1.6e-07 Score=72.87 Aligned_cols=49 Identities=8% Similarity=0.180 Sum_probs=42.4
Q ss_pred ccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcCCCCCCCCh
Q 036764 410 AICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCRYEMPTDDI 461 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd~ 461 (476)
..|+||++.|.. +..+ +|||.|.+.||.+||+.+.+||+++.+|...+.
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence 469999999974 5667 899999999999999988899999999876543
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.29 E-value=1.5e-07 Score=76.04 Aligned_cols=43 Identities=30% Similarity=0.720 Sum_probs=36.5
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
...|+||++.+. .+..+||+|. ||..|+..| ..||+||+.+..
T Consensus 18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 357999999865 3788999999 999999887 389999998864
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.23 E-value=3e-07 Score=93.01 Aligned_cols=43 Identities=30% Similarity=0.659 Sum_probs=37.6
Q ss_pred cccchhhccccCCCCceEEeCCCCc-cchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHR-YHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHi-FH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
...|+||++.+.. +..+||+|. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4679999999853 778899999 999999988 789999998864
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.20 E-value=3e-07 Score=90.67 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=41.6
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC--CCCCC--cCCCCCCCCh
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR--NTCPV--CRYEMPTDDI 461 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~--nTCPV--CR~eLptdd~ 461 (476)
....|+||++.|.. +++.+.|||.||+.||..|++.+ .+||+ ||+.+...+.
T Consensus 180 ~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 180 IELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp CCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred eeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 35679999999964 44445899999999999999764 47999 9998876543
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.72 E-value=1.9e-05 Score=67.93 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=38.5
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMPT 458 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLpt 458 (476)
-|.+|--.+. ...+.+||+|+||..|+..|.+ ..++||.||.++..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 4888877765 4788899999999999999985 46899999998753
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=76.64 Aligned_cols=51 Identities=24% Similarity=0.550 Sum_probs=40.5
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCC--CCCCcCCCCCCCCh
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRN--TCPVCRYEMPTDDI 461 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~n--TCPVCR~eLptdd~ 461 (476)
...|.||.+.+..+ .++-.|+|.||..|+.+|++.+. +||.|+...+...+
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 232 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence 45799999998764 33334999999999999997654 89999998776543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.96 E-value=0.015 Score=49.77 Aligned_cols=47 Identities=28% Similarity=0.634 Sum_probs=38.6
Q ss_pred cccchhhccccCCCCceEEeCC-CCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPC-SHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPC-gHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
-.-|-.|+.... ..+.| .|..|..|+...|.....||+|+++||++-
T Consensus 28 ~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 28 PQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred cccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 456999997743 23456 599999999999999999999999999863
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.58 E-value=0.046 Score=44.68 Aligned_cols=35 Identities=17% Similarity=0.508 Sum_probs=26.3
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHH-HH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVP-WL 443 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~-WL 443 (476)
+..|+||++.+........++|+|.||..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 467999998653323344589999999999998 54
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=91.55 E-value=0.097 Score=41.30 Aligned_cols=46 Identities=26% Similarity=0.547 Sum_probs=32.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC----CCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR----NTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~----nTCPVCR~eLp 457 (476)
...|.||.+. ++-+..-.|...||..|+.+.|... -.||.|+....
T Consensus 12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 4579999864 3333333499999999999888642 26999986543
No 76
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.07 E-value=0.099 Score=43.89 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=29.5
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC---CCCCCCcCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI---RNTCPVCRYE 455 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~---~nTCPVCR~e 455 (476)
..| ||......+.-+..-.|.-.||..|+..=+.. .-.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 457 89876544333333349999999998663322 2369999753
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=83.66 E-value=0.54 Score=43.79 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=34.0
Q ss_pred ccchhhccccCCCCc---eEEe-CCCCccchhhHHH------HHh-----CCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEK---AKRL-PCSHRYHGECIVP------WLR-----IRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gek---vr~L-PCgHiFH~~CI~~------WL~-----~~nTCPVCR~eLpt 458 (476)
..|+||...|..++. .+.- .|...||..|+.- -+. ..-.||.|+..-+.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 359999999987652 3333 4999999999832 111 14589999876554
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=81.53 E-value=0.87 Score=52.00 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=43.0
Q ss_pred CcccchhhccccCCCCceEEeCCC-CccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCS-HRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCg-HiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
+.-.|||-++.|.. +..+|.| +.|-+.+|.+||..+.+||+=|.+|...+
T Consensus 890 ~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 34569999999875 7889987 68999999999999999999999997653
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=81.24 E-value=0.86 Score=38.38 Aligned_cols=34 Identities=21% Similarity=0.474 Sum_probs=22.2
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHH
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPW 442 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~W 442 (476)
.+..|.||..- ..+.....--|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceeccccccccccHhhcccc
Confidence 36689999743 22222111127899999999995
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=80.69 E-value=0.67 Score=33.91 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=28.7
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.|.||...-..+.-+..-.|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48999876322222333349999999999764433 224999975
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.96 E-value=0.49 Score=43.08 Aligned_cols=45 Identities=33% Similarity=0.603 Sum_probs=31.5
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~eL 456 (476)
+..|.||... ++-+..-.|...||..|+.+-+.. .-.||.|+..-
T Consensus 4 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4569999855 332333348999999999887654 23599998754
No 82
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.36 E-value=0.54 Score=35.90 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=31.7
Q ss_pred CcccchhhccccCCCCce-EEeCCCCccchhhHHHHHh-----CCCCCCCcCCC
Q 036764 408 NNAICAVCKDEFGVGEKA-KRLPCSHRYHGECIVPWLR-----IRNTCPVCRYE 455 (476)
Q Consensus 408 ed~eCaICLEef~~gekv-r~LPCgHiFH~~CI~~WL~-----~~nTCPVCR~e 455 (476)
+...|+||...+..+... ..-.|...||..|+.--.. ..-.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 345699999887543333 3334999999999854321 23469999753
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=77.26 E-value=0.74 Score=35.35 Aligned_cols=44 Identities=30% Similarity=0.687 Sum_probs=30.2
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
....|.||... ++-+..-.|...||..|+.+-+.. .-.||.|++
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 35579999874 222333348999999999886533 225999975
No 84
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.68 E-value=0.54 Score=43.70 Aligned_cols=44 Identities=32% Similarity=0.572 Sum_probs=30.6
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCC----CCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIR----NTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~----nTCPVCR~eL 456 (476)
...|.||... + ....- .|...||..|+.+-+... -.||.|+..-
T Consensus 7 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 7 EDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4569999854 2 22222 388999999998876542 3599998754
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.15 E-value=1 Score=34.58 Aligned_cols=46 Identities=35% Similarity=0.648 Sum_probs=31.0
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRYEM 456 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~eL 456 (476)
....|.||.+. +.-+..-.|...||..|+.+-|.. .-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 35579999863 222333348899999999875543 22599997654
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=72.18 E-value=1.3 Score=34.69 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=30.9
Q ss_pred CcccchhhccccCCCCceE-EeCCCCccchhhHHHHHhC----CCCCCCcCCC
Q 036764 408 NNAICAVCKDEFGVGEKAK-RLPCSHRYHGECIVPWLRI----RNTCPVCRYE 455 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr-~LPCgHiFH~~CI~~WL~~----~nTCPVCR~e 455 (476)
+...|.||..... +...+ .-.|...||..|+..-+.. .-.||.|+..
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3456999987753 22222 2248999999999765432 2359999653
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=71.80 E-value=1.5 Score=36.79 Aligned_cols=46 Identities=28% Similarity=0.586 Sum_probs=29.8
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCR 453 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR 453 (476)
.+..|.||.+.-...+-+..-.|...||..|+...+.. .-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45679999876322222444459999999999887642 22466553
No 88
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.63 E-value=1 Score=41.55 Aligned_cols=43 Identities=28% Similarity=0.684 Sum_probs=30.1
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRYE 455 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~e 455 (476)
..|.+|... +.-+..-.|...||..|+.+=+.. .-.||.|+..
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 469999855 333333458899999999875543 2259999865
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.70 E-value=0.56 Score=35.24 Aligned_cols=44 Identities=32% Similarity=0.730 Sum_probs=29.7
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC----CCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR----NTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~----nTCPVCR~ 454 (476)
....|.||... +.-+..-.|...||..|+.+-|... -.||.|++
T Consensus 8 ~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 35679999875 3333333499999999998755432 24888854
No 90
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=68.47 E-value=2.8 Score=43.14 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=33.3
Q ss_pred ccchhhccccCCCCceEEeCCCCccchh--hHHHHHhC--CCCCCCcCCCCCCCCh
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGE--CIVPWLRI--RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~--CI~~WL~~--~nTCPVCR~eLptdd~ 461 (476)
..|+|-+..+. ..++...|.|+-|.+ -+...... .-.||+|.+.+...++
T Consensus 250 L~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 250 LQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp SBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred ecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 56999888775 457777899995543 33333322 3369999998866543
No 91
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.31 E-value=2.5 Score=35.45 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=26.8
Q ss_pred cccchhhccccCCCCceEEeC--CC-CccchhhHHHHHhC----CCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP--CS-HRYHGECIVPWLRI----RNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP--Cg-HiFH~~CI~~WL~~----~nTCPVCR~eL 456 (476)
..-| ||..... +.-+..=. |. ..||..|+. |.. .-.||.|+...
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3457 9988643 22222223 54 689999996 332 23599998654
No 92
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.04 E-value=3 Score=42.76 Aligned_cols=50 Identities=16% Similarity=0.468 Sum_probs=33.5
Q ss_pred ccchhhccccCCCCceEEeCCCCc--cchhhHHHHHhC--CCCCCCcCCCCCCCCh
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHR--YHGECIVPWLRI--RNTCPVCRYEMPTDDI 461 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHi--FH~~CI~~WL~~--~nTCPVCR~eLptdd~ 461 (476)
..|+|-+..+.. .++...|.|+ |-..-+...... .-.||+|.+.+...++
T Consensus 216 L~CPlS~~ri~~--P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp SBCTTTCSBCSS--EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeCCCccceecc--CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 469998877753 5777789999 444444443333 3369999998876543
No 93
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.92 E-value=5.8 Score=29.27 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=28.1
Q ss_pred cchhhccccCCCCceEE-e-CCCCccchhhHHHHH----hCCCCCCCcC
Q 036764 411 ICAVCKDEFGVGEKAKR-L-PCSHRYHGECIVPWL----RIRNTCPVCR 453 (476)
Q Consensus 411 eCaICLEef~~gekvr~-L-PCgHiFH~~CI~~WL----~~~nTCPVCR 453 (476)
.|.||...+..+...+. - .|...||..|+.--. ...-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899988854443333 3 488899999974221 2455799985
No 94
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.43 E-value=1.6 Score=36.45 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=32.1
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhCC----CCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIR----NTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~----nTCPVCR~eLp 457 (476)
....|.||... ++-+..-.|.-.||..|+.+=|... -.||.|+..-+
T Consensus 24 n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 24 SATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp SSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 35579999965 3323333488999999998866442 25999986543
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=63.76 E-value=2.9 Score=35.44 Aligned_cols=44 Identities=27% Similarity=0.564 Sum_probs=28.5
Q ss_pred cchhhccccCCCCceE-EeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAK-RLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr-~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.|.||...-....... .-.|...||..|+.+-|.. .-.||.||.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888886422222222 2248999999999876643 226999975
No 96
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=62.71 E-value=0.87 Score=35.35 Aligned_cols=44 Identities=36% Similarity=0.673 Sum_probs=30.0
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.+..|.||... +.-+..-.|...||..|+.+-|.. .-.||.|+.
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 35679999864 333333349999999999875543 225999954
No 97
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.00 E-value=5.3 Score=31.79 Aligned_cols=46 Identities=22% Similarity=0.532 Sum_probs=29.6
Q ss_pred ccchhhccccCCCCc-eEEeCCCCccchhhHHHHHh-----CCCCCCCcCCCC
Q 036764 410 AICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLR-----IRNTCPVCRYEM 456 (476)
Q Consensus 410 ~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~-----~~nTCPVCR~eL 456 (476)
.-| ||...+..... +..-.|...||..|+.--.. ..-.||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 446 99988743333 33334999999999842211 234699998755
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.48 E-value=1.3 Score=33.89 Aligned_cols=50 Identities=20% Similarity=0.638 Sum_probs=32.1
Q ss_pred CcccchhhccccCCC-CceEE-eCCCCccchhhHHHHHh-------CCCCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVG-EKAKR-LPCSHRYHGECIVPWLR-------IRNTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~g-ekvr~-LPCgHiFH~~CI~~WL~-------~~nTCPVCR~eLp 457 (476)
....|.||....... ..... -.|.-.||..|+.+-+. ..-.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 356799999764322 22222 24999999999987442 1235999976543
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.97 E-value=1 Score=34.13 Aligned_cols=43 Identities=33% Similarity=0.743 Sum_probs=29.3
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
+..|.||... +.-+..-.|...||..|+.+=+.. .-.||.|+.
T Consensus 5 ~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 5 EDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4579999874 333333349999999999875543 224998853
No 100
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.95 E-value=6.2 Score=35.51 Aligned_cols=44 Identities=20% Similarity=0.429 Sum_probs=30.6
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh-----------CCCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR-----------IRNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~-----------~~nTCPVCR~ 454 (476)
.+..|.||.+. ++-.-.-.|...||..||.+=+. ..-.||+|+.
T Consensus 62 ~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 35679999875 22222234999999999997663 1236999974
No 101
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=56.05 E-value=5.3 Score=31.68 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=26.4
Q ss_pred cccchhhccccCCCCceEEeC--CC-CccchhhHHHHHhC----CCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLP--CS-HRYHGECIVPWLRI----RNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP--Cg-HiFH~~CI~~WL~~----~nTCPVCR~eL 456 (476)
..-| ||..... +.-+..=. |. ..||..|+. |.. .-.||.|+...
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 3457 8987642 32111112 55 689999996 433 22599997644
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=55.74 E-value=2.4 Score=37.84 Aligned_cols=45 Identities=24% Similarity=0.520 Sum_probs=29.0
Q ss_pred cccchhhccccCCCCceEE-eCCCCccchhhHHHHH-----hCCCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKR-LPCSHRYHGECIVPWL-----RIRNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~-LPCgHiFH~~CI~~WL-----~~~nTCPVCR~ 454 (476)
..-| ||......+..... -.|...||..|+.--. ...-.||.|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 4468 99987643333333 3499999999984211 12346999975
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.34 E-value=0.91 Score=37.67 Aligned_cols=46 Identities=28% Similarity=0.465 Sum_probs=29.6
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
...|.||...-....-+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4579999876322112222349999999999864433 224999964
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=55.03 E-value=17 Score=30.57 Aligned_cols=56 Identities=18% Similarity=0.379 Sum_probs=39.5
Q ss_pred cccchhhccccCCCCceEEeC--CCCccchhhHHHHHhC-----------CCCCCCcCCCCCCCChHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLP--CSHRYHGECIVPWLRI-----------RNTCPVCRYEMPTDDIDYER 465 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP--CgHiFH~~CI~~WL~~-----------~nTCPVCR~eLptdd~eye~ 465 (476)
...|.+|.+.++.. .-.+.| =.|.||..|-+..++. ...||+--..+|-.-.+.|.
T Consensus 15 ~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFmqgEI 83 (93)
T 2cs3_A 15 PLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEI 83 (93)
T ss_dssp SCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCCHHHH
T ss_pred eeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHHhhHH
Confidence 46799999998764 334444 4799999999999864 22477776666655555544
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=54.00 E-value=12 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=20.9
Q ss_pred cccchhhccccC-----CCCc-eEEeCCCCccchhhHH
Q 036764 409 NAICAVCKDEFG-----VGEK-AKRLPCSHRYHGECIV 440 (476)
Q Consensus 409 d~eCaICLEef~-----~gek-vr~LPCgHiFH~~CI~ 440 (476)
...|.+|+..-. .+++ +....|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 346999987531 1122 3333499999999995
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=53.17 E-value=2 Score=35.32 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=32.7
Q ss_pred CcccchhhccccCCCC-ceEEe-CCCCccchhhHHHHHhC--CCCCCCcCCCCCCCChH
Q 036764 408 NNAICAVCKDEFGVGE-KAKRL-PCSHRYHGECIVPWLRI--RNTCPVCRYEMPTDDID 462 (476)
Q Consensus 408 ed~eCaICLEef~~ge-kvr~L-PCgHiFH~~CI~~WL~~--~nTCPVCR~eLptdd~e 462 (476)
....|.||...-.... ....- .|.-.||..|+.+-+.. .-.||.|+........+
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC--
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhhhh
Confidence 3467999987532111 22222 38899999999764311 23599997765554443
No 107
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=52.39 E-value=7.5 Score=32.86 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=32.2
Q ss_pred ccchhhccccCCCCceEEe--CCCCccchhhHHHHH---h-------CCCCCCCcCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRL--PCSHRYHGECIVPWL---R-------IRNTCPVCRYEMP 457 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L--PCgHiFH~~CI~~WL---~-------~~nTCPVCR~eLp 457 (476)
..|.||...+......+.- .|...||..|+.--- + ..-.||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4699999998654444333 489999999983211 0 2346999976543
No 108
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=52.19 E-value=2 Score=35.89 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=23.7
Q ss_pred cccchhhccccCCCCceEEeCCC---CccchhhHHHHHhC----CCCCCC-cC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCS---HRYHGECIVPWLRI----RNTCPV-CR 453 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCg---HiFH~~CI~~WL~~----~nTCPV-CR 453 (476)
..-| ||..... +.-+..=.|. ..||..|+. |.. .-.||. |+
T Consensus 26 ~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 3457 9987532 3211111244 689999985 322 235999 95
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.44 E-value=13 Score=31.54 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=34.5
Q ss_pred cccchhhccccCCCCc----eEEeCCCCccchhhHHHHHh-CCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEK----AKRLPCSHRYHGECIVPWLR-IRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gek----vr~LPCgHiFH~~CI~~WL~-~~nTCPVCR~eLp 457 (476)
...|.||-+.+..... +..--|+--.|+.|..-=.+ .+..||.|++...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3579999998654332 33334788889999865554 4778999987764
No 110
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.26 E-value=3 Score=32.87 Aligned_cols=44 Identities=20% Similarity=0.481 Sum_probs=28.4
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHH---------hCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWL---------RIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL---------~~~nTCPVCR~ 454 (476)
.-| ||...+..+.-+..-.|...||..|+.--. ...-.||.|+.
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 447 899876532223333599999999984211 23557999964
No 111
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=50.98 E-value=10 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.553 Sum_probs=23.3
Q ss_pred cccchhhccccCCCCceEEe--CCCCccchhhH
Q 036764 409 NAICAVCKDEFGVGEKAKRL--PCSHRYHGECI 439 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L--PCgHiFH~~CI 439 (476)
...|++|...+......+.- .|.-.||..|+
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 44699999998765444333 69999999997
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=50.00 E-value=3.6 Score=39.74 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=25.8
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC-----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-----~nTCPVCR~ 454 (476)
.|.+|...-..+.-+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 58899864222222333349999999999865543 125999975
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=49.40 E-value=3.1 Score=32.67 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=28.4
Q ss_pred CcccchhhccccCCCCceEEeCCCCccchhhHHHHHh---CCCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLR---IRNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~---~~nTCPVCR~ 454 (476)
+...| ||...+..+.-+..-.|...||..|+.--.. ..-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34568 9988765222233334999999999853221 1335888864
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=49.01 E-value=3.4 Score=33.39 Aligned_cols=43 Identities=28% Similarity=0.558 Sum_probs=25.9
Q ss_pred cchhhccccCCCCceEE-eCCCCccchhhHHHHHhC----C-CCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKR-LPCSHRYHGECIVPWLRI----R-NTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~-LPCgHiFH~~CI~~WL~~----~-nTCPVCR~ 454 (476)
.|.||...-.. ..... -.|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666654221 12221 238899999999876643 1 36999975
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.72 E-value=5.2 Score=32.26 Aligned_cols=44 Identities=27% Similarity=0.510 Sum_probs=28.0
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC-----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI-----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~-----~nTCPVCR~ 454 (476)
.|.||...-..+.-+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68889864222222222248999999999865532 225999964
No 116
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.65 E-value=2.8 Score=34.41 Aligned_cols=47 Identities=21% Similarity=0.490 Sum_probs=30.7
Q ss_pred cccchhhccccCCC-CceEEe-CCCCccchhhHHHHHh-----C---CCCCCCcCCC
Q 036764 409 NAICAVCKDEFGVG-EKAKRL-PCSHRYHGECIVPWLR-----I---RNTCPVCRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~g-ekvr~L-PCgHiFH~~CI~~WL~-----~---~nTCPVCR~e 455 (476)
...|.||...-... .....- .|...||..|+.+-|. . .-.||.|+..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 34699999764321 222222 4999999999987653 1 2359999653
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=45.24 E-value=5.5 Score=31.38 Aligned_cols=43 Identities=28% Similarity=0.583 Sum_probs=26.5
Q ss_pred cchhhccccCCCCceEEe-CCCCccchhhHHHHHhC-----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRI-----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~-----~nTCPVCR~ 454 (476)
.|.||...-.. .....- .|...||..|+.+=|.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 46677753211 222222 38899999999865543 225999975
No 118
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.90 E-value=17 Score=32.26 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=28.8
Q ss_pred CcccchhhccccCCCCceEEe-CCCCccchhhHHHHH------hC-----CCCCCCcCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWL------RI-----RNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL------~~-----~nTCPVCR~ 454 (476)
.+..|.||.+. ..+..- .|...||..||.+-+ +. .-.|++|+-
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 35569999865 223222 388999999999752 11 236999954
No 119
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.99 E-value=15 Score=27.99 Aligned_cols=41 Identities=20% Similarity=0.513 Sum_probs=30.7
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+.|...+..++.+ ..-+..||..|. +|..|++.|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCCC
Confidence 34799999998765544 346788998883 699999888754
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=42.69 E-value=1.9 Score=33.58 Aligned_cols=44 Identities=18% Similarity=0.359 Sum_probs=25.3
Q ss_pred ccchhhccccCCCCceEEe--CCCCccchhhHHHH---Hh-----CCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRL--PCSHRYHGECIVPW---LR-----IRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L--PCgHiFH~~CI~~W---L~-----~~nTCPVCR~ 454 (476)
..| ||......+.-+..= .|...||..|+.-- .. ..-.||.||.
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 447 897665443322222 28889999997310 00 1235999973
No 121
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=42.27 E-value=4.1 Score=32.47 Aligned_cols=47 Identities=19% Similarity=0.420 Sum_probs=29.4
Q ss_pred cccchhhccccCCCCceEEe--CCCCccchhhHHHHHh---------CCCCCCCcCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL--PCSHRYHGECIVPWLR---------IRNTCPVCRYEM 456 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L--PCgHiFH~~CI~~WL~---------~~nTCPVCR~eL 456 (476)
...| ||......+.-+..= .|...||..|+.---. ..-.||.|+..-
T Consensus 16 ~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 3458 898874444333333 5999999999842111 234699997543
No 122
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=42.24 E-value=12 Score=28.64 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=18.6
Q ss_pred ccchhhccccCCCCceEEeCCCCccch-hhHHHHHhCCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHG-ECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~-~CI~~WL~~~nTCPVCR~ 454 (476)
..|..|...+..+. -...=+..||. .|..+- ....|-.|..
T Consensus 28 F~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~ 69 (76)
T 1iml_A 28 LKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGG 69 (76)
T ss_dssp CBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCC
T ss_pred CCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCC
Confidence 34666665554321 11223455665 455432 2344555543
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.25 E-value=6.2 Score=31.30 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=28.7
Q ss_pred CcccchhhccccC-CCCceEEe-CCCCccchhhHHHHHhC--CCCCCCcCC
Q 036764 408 NNAICAVCKDEFG-VGEKAKRL-PCSHRYHGECIVPWLRI--RNTCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef~-~gekvr~L-PCgHiFH~~CI~~WL~~--~nTCPVCR~ 454 (476)
....|.||...-. .......- .|.-.||..|+.+-... .-.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 3567999987632 12222222 48999999999753211 225888853
No 124
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.99 E-value=3.7 Score=34.33 Aligned_cols=45 Identities=24% Similarity=0.511 Sum_probs=27.8
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRYE 455 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~e 455 (476)
.|.||...-....-+..-.|...||..|+.+=|.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47788765322112222248999999999875543 2258888653
No 125
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=40.54 E-value=5 Score=30.68 Aligned_cols=41 Identities=29% Similarity=0.600 Sum_probs=24.0
Q ss_pred ccchhhccccCCCCceEEeC--CC-CccchhhHHHHHhC----CCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLP--CS-HRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LP--Cg-HiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.-| ||..... +.-+..=. |. ..||..|+. |.. .-.||.|++
T Consensus 11 ~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 11 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 346 9988642 22111112 44 689999997 433 225999864
No 126
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=40.19 E-value=5.4 Score=30.49 Aligned_cols=41 Identities=27% Similarity=0.575 Sum_probs=24.6
Q ss_pred ccchhhccccCCCCceEEeC--CC-CccchhhHHHHHhC----CCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLP--CS-HRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LP--Cg-HiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.-| ||..... +.-+..=. |. ..||..|+. |.. .-.||.|++
T Consensus 10 ~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 10 TYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred cEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 446 9988642 22122123 55 699999997 332 225999964
No 127
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.50 E-value=15 Score=34.14 Aligned_cols=34 Identities=21% Similarity=0.631 Sum_probs=25.5
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~CI~~W 442 (476)
...|.+|...|..-.+.-... ||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 457999999997655444444 9999999997554
No 128
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.89 E-value=19 Score=31.26 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=25.2
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~W 442 (476)
...|.+|...|..-...-.- .||++||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34699999999765443344 49999999996553
No 129
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.32 E-value=7 Score=39.02 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=0.0
Q ss_pred cccchhhccccCCCCc-eEEeCCCCccchhhHHHHH
Q 036764 409 NAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWL 443 (476)
Q Consensus 409 d~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL 443 (476)
...|.+|...|..-.+ .-+-.||++||..|...++
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 3569999999875433 2233599999999987665
No 130
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.33 E-value=6.5 Score=34.01 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=16.7
Q ss_pred EEeCCCCccchhhHHHHHhCCCCCCCcCCCC
Q 036764 426 KRLPCSHRYHGECIVPWLRIRNTCPVCRYEM 456 (476)
Q Consensus 426 r~LPCgHiFH~~CI~~WL~~~nTCPVCR~eL 456 (476)
++..||+.|. .=+.....||.|+.+-
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 3446888881 1224467899998753
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.42 E-value=18 Score=34.07 Aligned_cols=35 Identities=23% Similarity=0.637 Sum_probs=26.1
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWL 443 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL 443 (476)
...|.+|...|..-.+.-.. .||.+||..|.....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~ 199 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYS 199 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcc
Confidence 35799999999765544444 499999999976543
No 132
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=35.37 E-value=12 Score=31.61 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=21.2
Q ss_pred cchhhccccCC----C---CceEEeCCCCccchhhHHHH
Q 036764 411 ICAVCKDEFGV----G---EKAKRLPCSHRYHGECIVPW 442 (476)
Q Consensus 411 eCaICLEef~~----g---ekvr~LPCgHiFH~~CI~~W 442 (476)
.|.||+..-.. + +-+....|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 59999875421 1 12333359999999999754
No 133
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.30 E-value=38 Score=25.88 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=30.6
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+..++... ..-+..||..|. +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 47999999887655433 345788998883 689999888754
No 134
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.24 E-value=24 Score=28.78 Aligned_cols=34 Identities=18% Similarity=0.461 Sum_probs=25.7
Q ss_pred ccchhhccccCCCCceEEe-CCCCccchhhHHHHH
Q 036764 410 AICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWL 443 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL 443 (476)
..|.+|...|..-.+.-.- .||.+||..|...+.
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4699999999765444343 499999999986654
No 135
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.05 E-value=26 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.587 Sum_probs=25.4
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~W 442 (476)
...|.+|...|..-...-.- .||.+||..|....
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 34699999999765443333 49999999997654
No 136
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=33.58 E-value=14 Score=28.67 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=28.4
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCc
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVC 452 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVC 452 (476)
..|--|+..+.....-+.-.|++.||..|=.---..-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3599999998532212222399999999954433444579988
No 137
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=33.47 E-value=28 Score=27.94 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=25.6
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~W 442 (476)
...|.+|...|..-.+.-.- .|+.+||..|....
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45799999999765543333 49999999997654
No 138
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=33.27 E-value=16 Score=29.33 Aligned_cols=30 Identities=17% Similarity=0.538 Sum_probs=23.8
Q ss_pred cccchhhccccCCCCceEEeCC-CCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLPC-SHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPC-gHiFH~~CI~~W 442 (476)
..-|.||.+. ...+.+.| +-+||..|....
T Consensus 8 ~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 3459999988 34888889 899999996653
No 139
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=33.14 E-value=5.6 Score=34.80 Aligned_cols=44 Identities=16% Similarity=0.431 Sum_probs=29.3
Q ss_pred ccchhhccccCCCCceEEe-CCCCccchhhHHHHHhCCCCCCCcC
Q 036764 410 AICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPWLRIRNTCPVCR 453 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~WL~~~nTCPVCR 453 (476)
..|..|...|..-.+.-.- .||.+||..|..........|-.|-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 4699999999764443333 4999999999766554455576663
No 140
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.79 E-value=33 Score=26.70 Aligned_cols=42 Identities=24% Similarity=0.570 Sum_probs=30.5
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
...|+.|...+...+.+. .-+..||..|. +|-.|++.|....
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 346999999886555443 45788999883 6888888886544
No 141
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.79 E-value=26 Score=27.31 Aligned_cols=39 Identities=26% Similarity=0.644 Sum_probs=29.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|+-|...+..++.+. .-+..||..|. +|-.|+..|.
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLL--ALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEE--ETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEE--ECCcccccccC--------CcCcCCCCcC
Confidence 346999999887655443 34778998883 6899988886
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.05 E-value=17 Score=32.15 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=24.4
Q ss_pred CcccchhhccccC-C-CCceEEeCCCCccchhhHHH
Q 036764 408 NNAICAVCKDEFG-V-GEKAKRLPCSHRYHGECIVP 441 (476)
Q Consensus 408 ed~eCaICLEef~-~-gekvr~LPCgHiFH~~CI~~ 441 (476)
....|.+|...|. . +......-|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 3567999999983 3 33444455999999999653
No 143
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.50 E-value=29 Score=27.10 Aligned_cols=32 Identities=16% Similarity=0.460 Sum_probs=23.8
Q ss_pred ccchhhccccCCCCceEEe-CCCCccchhhHHH
Q 036764 410 AICAVCKDEFGVGEKAKRL-PCSHRYHGECIVP 441 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~ 441 (476)
..|.+|...|..-...-.- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3699999999765443333 4999999999754
No 144
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=30.83 E-value=4.7 Score=42.26 Aligned_cols=50 Identities=18% Similarity=0.384 Sum_probs=31.1
Q ss_pred ccchhhccccCCCCc-eEEeCCCCccchhhHHHHHh-----CCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLR-----IRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~-----~~nTCPVCR~eLptd 459 (476)
..++||...+..+.. +.+-.|...||..|+.---. ..-.||.|+....+.
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred CeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 346699987643333 33334999999999832111 234799997655443
No 145
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.89 E-value=6.2 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=27.8
Q ss_pred cchhhccccCCCCceEEeCCCCccchhhHHHHHhC----CCCCCCcCC
Q 036764 411 ICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 411 eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.|.||...-..+.-+..-.|...||..|+.+=|.. .-.||.|+.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 58888775332222333348999999999864433 224888853
No 146
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=29.54 E-value=10 Score=29.25 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=24.3
Q ss_pred ccchhhccccCCCCceEEeC--CC-CccchhhHHHHHhC----CCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEKAKRLP--CS-HRYHGECIVPWLRI----RNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LP--Cg-HiFH~~CI~~WL~~----~nTCPVCR~ 454 (476)
.-| ||..... +.-+..=. |. ..||..|+. |.. .-.||.|++
T Consensus 12 ~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 12 TYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp EET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred cEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 446 9988632 22111113 44 799999996 322 235999965
No 147
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.43 E-value=44 Score=24.79 Aligned_cols=41 Identities=22% Similarity=0.486 Sum_probs=29.1
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+...+... ..-+..||..|. +|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccCCC
Confidence 36999999887644332 235778998883 688998888654
No 148
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=29.41 E-value=31 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=24.9
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~W 442 (476)
...|.+|...|..-...-.- .|+.+||..|....
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 34699999999765443333 49999999997553
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=45 Score=24.76 Aligned_cols=41 Identities=17% Similarity=0.481 Sum_probs=29.2
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+...+.. ...-+..||..|. +|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCcccC--------eECCCCCcCCCC
Confidence 4699999887754332 3346788998883 688898888654
No 150
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=28.47 E-value=8.9 Score=28.19 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=24.6
Q ss_pred hhccccCCCCceEEeCCCCccchhhHHHHHh---CCCCCCCcCC
Q 036764 414 VCKDEFGVGEKAKRLPCSHRYHGECIVPWLR---IRNTCPVCRY 454 (476)
Q Consensus 414 ICLEef~~gekvr~LPCgHiFH~~CI~~WL~---~~nTCPVCR~ 454 (476)
||......+.-+..-.|...||..|+.---. ..-.||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6876654222233334899999999853221 2346888864
No 151
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.38 E-value=51 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.533 Sum_probs=28.5
Q ss_pred ccchhhccccCC--CCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGV--GEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~--gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|+.|...+.. .... ...-+..||..|. +|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 469999998764 2233 2346788998884 68899888864
No 152
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=48 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.505 Sum_probs=29.1
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+.|...+. ++. ...-+..||..|. .|-.|++.|...
T Consensus 25 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIR-GPF--LVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCC-SCE--EEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEec-ceE--EEECCccccccCC--------ccCCCCCCCCCC
Confidence 357999999884 332 3356889998884 689999888643
No 153
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.99 E-value=32 Score=27.54 Aligned_cols=33 Identities=21% Similarity=0.486 Sum_probs=24.2
Q ss_pred cccchhhccccCCCCceEEe-CCCCccchhhHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRL-PCSHRYHGECIVP 441 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L-PCgHiFH~~CI~~ 441 (476)
...|.+|...|..-.+.-.- .||.+||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34799999999765433333 4999999999654
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.32 E-value=41 Score=24.68 Aligned_cols=42 Identities=31% Similarity=0.708 Sum_probs=30.4
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+.|...+...+.+.. .-+..||..|. .|-.|.+.|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3479999999876554432 45778998884 688998888643
No 155
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.53 E-value=51 Score=25.82 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=29.9
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+.|...+.. .. ...-+..||..|. +|-.|++.|...
T Consensus 25 ~~~C~~C~~~I~~--~~-~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG--AV-VKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS--CC-EESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CCCcccCCCEecc--cE-EEECCceECccCC--------EecCCCCCCCCC
Confidence 3579999998874 22 3457789999883 699999988654
No 156
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.04 E-value=62 Score=24.03 Aligned_cols=40 Identities=18% Similarity=0.498 Sum_probs=25.6
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|+.|...+...+.. ...-+..||..|. +|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAG-VVALDRVFHVGCF--------VCSTCRAQLRG 45 (72)
T ss_dssp CCCSSSCSCCCSSSCC-EECSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CCCccCCCccCCCceE-EEECCCeEcccCC--------cccccCCcCCc
Confidence 4688888876543222 2335677888773 58888877743
No 157
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.46 E-value=6.3 Score=39.40 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=29.9
Q ss_pred cccchhhccccCCCCceEEe---CC--CCccchhhHHHHHhCCCCCCCcCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRL---PC--SHRYHGECIVPWLRIRNTCPVCRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~L---PC--gHiFH~~CI~~WL~~~nTCPVCR~e 455 (476)
...|+||-.....+ +... .= .+.+|.-|-..|--.+..||.|-..
T Consensus 182 ~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 45799998765322 1110 11 2667788888898888899999654
No 158
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.32 E-value=49 Score=24.24 Aligned_cols=39 Identities=21% Similarity=0.516 Sum_probs=28.8
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+. ++ ....-+..||..|. +|-.|++.|...
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCCC
Confidence 46999999887 32 33456789998883 689999888653
No 159
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=25.11 E-value=54 Score=27.96 Aligned_cols=44 Identities=25% Similarity=0.499 Sum_probs=27.3
Q ss_pred CcccchhhccccCCCCceEEe---CCCCccchhhHHHHHhCC----CCCCCcCCCCC
Q 036764 408 NNAICAVCKDEFGVGEKAKRL---PCSHRYHGECIVPWLRIR----NTCPVCRYEMP 457 (476)
Q Consensus 408 ed~eCaICLEef~~gekvr~L---PCgHiFH~~CI~~WL~~~----nTCPVCR~eLp 457 (476)
.+..|.+|.+. + ....- .|...||..|+. |... -.||.|+-.+.
T Consensus 14 ~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 14 HEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 35679999843 2 23222 377999999997 5431 24887654443
No 160
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.90 E-value=24 Score=32.41 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=12.5
Q ss_pred CCCCccchhhHHHHHhCCCCCCCcCCC
Q 036764 429 PCSHRYHGECIVPWLRIRNTCPVCRYE 455 (476)
Q Consensus 429 PCgHiFH~~CI~~WL~~~nTCPVCR~e 455 (476)
.|||+|-.. .....||+|..+
T Consensus 160 ~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCEeeCC------CCCCCCCCCcCC
Confidence 466665432 234489999763
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.19 E-value=55 Score=25.74 Aligned_cols=40 Identities=20% Similarity=0.532 Sum_probs=27.0
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+...+.+ ..-+..||..|. +|-.|.+.|...
T Consensus 16 ~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp CBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4688888887654432 456778888773 477777776543
No 162
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.85 E-value=46 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.524 Sum_probs=26.4
Q ss_pred ccchhhccccCC--CCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGV--GEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~--gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|+.|...+.. .... ...-+..||..|. +|-.|++.|..
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCcccC--------ChhhCCCcCCC
Confidence 368888888763 2222 3346778888883 58888877753
No 163
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.60 E-value=22 Score=27.35 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=27.2
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+..++.+ ..-+..||..|. +|-.|++.|...
T Consensus 8 ~~C~~C~~~I~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEV--QCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEE--EETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeE--EeCCcccccccC--------ccCCCCCCCCCC
Confidence 4688888887655533 336778888773 477887777544
No 164
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=23.54 E-value=31 Score=31.32 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=11.9
Q ss_pred CCCCccchhhHHHHHhCCCCCCCcCC
Q 036764 429 PCSHRYHGECIVPWLRIRNTCPVCRY 454 (476)
Q Consensus 429 PCgHiFH~~CI~~WL~~~nTCPVCR~ 454 (476)
.|||+|-. .....||+|..
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~ 161 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGA 161 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCC
T ss_pred CCCCeeCC-------CCCCCCCCCCC
Confidence 36666642 23458999975
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.00 E-value=57 Score=24.51 Aligned_cols=42 Identities=31% Similarity=0.650 Sum_probs=29.8
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
...|+-|...+...+.+. ..-+..||..| .+|-.|++.|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEecccc--------CeECCCCCCCCCC
Confidence 357999999887544443 23577899888 3688898888653
No 166
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=22.87 E-value=39 Score=28.26 Aligned_cols=12 Identities=25% Similarity=0.337 Sum_probs=5.4
Q ss_pred CCccchhhHHHH
Q 036764 431 SHRYHGECIVPW 442 (476)
Q Consensus 431 gHiFH~~CI~~W 442 (476)
+..||..|..+.
T Consensus 57 g~~yC~~cy~~~ 68 (123)
T 2l3k_A 57 SDIVCEQDIYEW 68 (123)
T ss_dssp SSEEEGGGHHHH
T ss_pred CEEEcHHHhHHH
Confidence 344444444443
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.47 E-value=55 Score=24.20 Aligned_cols=38 Identities=24% Similarity=0.579 Sum_probs=27.2
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPT 458 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLpt 458 (476)
..|+.|...+.. +. ...-+..||..|. +|-.|+++|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCCC--------ccCCCCCcCCc
Confidence 469999888763 22 3456788998883 58888888854
No 168
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=22.38 E-value=17 Score=38.29 Aligned_cols=44 Identities=25% Similarity=0.583 Sum_probs=27.8
Q ss_pred ccchhhccccCCCCc-eEEeCCCCccchhhHHHHHh-----CCCCCCCcCC
Q 036764 410 AICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWLR-----IRNTCPVCRY 454 (476)
Q Consensus 410 ~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL~-----~~nTCPVCR~ 454 (476)
.-| ||...+..+.. +.+-.|...||..|+.---. ..-.||.|+.
T Consensus 38 ~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 38 VYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp EET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred eEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 335 99987643333 33334999999999842211 1236999975
No 169
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.36 E-value=20 Score=24.17 Aligned_cols=15 Identities=47% Similarity=1.123 Sum_probs=8.0
Q ss_pred CCCCcCCCCCCCChH
Q 036764 448 TCPVCRYEMPTDDID 462 (476)
Q Consensus 448 TCPVCR~eLptdd~e 462 (476)
.||+|.+.+|...+.
T Consensus 8 qcpvcqq~mpaahin 22 (29)
T 3vhs_A 8 QCPVCQQMMPAAHIN 22 (29)
T ss_dssp ECTTTCCEEEGGGHH
T ss_pred eChHHHHhCcHHHHH
Confidence 366666655544443
No 170
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.01 E-value=40 Score=30.43 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=31.1
Q ss_pred Ccccchhhcccc--CCCCceEEeCCCCccchhhHHHHHhCCC--CCCCcCC
Q 036764 408 NNAICAVCKDEF--GVGEKAKRLPCSHRYHGECIVPWLRIRN--TCPVCRY 454 (476)
Q Consensus 408 ed~eCaICLEef--~~gekvr~LPCgHiFH~~CI~~WL~~~n--TCPVCR~ 454 (476)
....|++|...| ..+......-|.|.+|..|-. |+.... .|-+|++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 356799999976 444455556699999999972 433222 3777754
No 171
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.74 E-value=45 Score=25.55 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=27.9
Q ss_pred cccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCC
Q 036764 409 NAICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMP 457 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLp 457 (476)
...|+.|...+.. . ....-+..||..|. +|-.|++.|.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 3469999998764 2 23456889999884 6888988764
No 172
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.65 E-value=49 Score=25.64 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=29.1
Q ss_pred cccchhhccccCCCCc-eEEeCCCCccchhhHHHHH----hCCCCCCCcCCC
Q 036764 409 NAICAVCKDEFGVGEK-AKRLPCSHRYHGECIVPWL----RIRNTCPVCRYE 455 (476)
Q Consensus 409 d~eCaICLEef~~gek-vr~LPCgHiFH~~CI~~WL----~~~nTCPVCR~e 455 (476)
...| ||......+.. +..-.|...||..|+.--- ...-.||.|+..
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 4568 79887654433 3333499999999985421 123369999643
No 173
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.24 E-value=19 Score=24.29 Aligned_cols=11 Identities=45% Similarity=1.401 Sum_probs=8.4
Q ss_pred CCCCcCCCCCC
Q 036764 448 TCPVCRYEMPT 458 (476)
Q Consensus 448 TCPVCR~eLpt 458 (476)
+||+|+..+|.
T Consensus 5 ~CpvCk~q~Pd 15 (28)
T 2jvx_A 5 CCPKCQYQAPD 15 (28)
T ss_dssp ECTTSSCEESS
T ss_pred cCccccccCcC
Confidence 68999887754
No 174
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=20.90 E-value=72 Score=25.24 Aligned_cols=34 Identities=24% Similarity=0.578 Sum_probs=28.5
Q ss_pred cccchhhccccCCCCceEEeC-CCCccchh-hHHHH
Q 036764 409 NAICAVCKDEFGVGEKAKRLP-CSHRYHGE-CIVPW 442 (476)
Q Consensus 409 d~eCaICLEef~~gekvr~LP-CgHiFH~~-CI~~W 442 (476)
...|+-|+..+..+.....-. ..|+||.. ||...
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 357999999999998877776 88999985 88775
No 175
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.60 E-value=57 Score=27.20 Aligned_cols=51 Identities=8% Similarity=0.012 Sum_probs=33.4
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTDD 460 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptdd 460 (476)
..|..|...+......-...=+..||..|..+-+.....|-.|...|....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 358888877642111112235678999998887665558999998887543
No 176
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.16 E-value=66 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=27.3
Q ss_pred ccchhhccccCCCCceEEeCCCCccchhhHHHHHhCCCCCCCcCCCCCCC
Q 036764 410 AICAVCKDEFGVGEKAKRLPCSHRYHGECIVPWLRIRNTCPVCRYEMPTD 459 (476)
Q Consensus 410 ~eCaICLEef~~gekvr~LPCgHiFH~~CI~~WL~~~nTCPVCR~eLptd 459 (476)
..|+.|...+.. .. ...-+..||..|. +|-.|++.|...
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCCCC
Confidence 469999888763 22 2335778888884 688888887654
Done!