BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036765
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350
L +A LC++C +++ N F PCGH C C ++ + CP+CR+ + V+ ++ P
Sbjct: 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLP 68
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
L + + C +C D + + F+PCGH C DC + K CPICR+ I R F
Sbjct: 21 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRK-----CPICRSTIKGTVRTF 72
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
L + KLC IC D FVPCGH TC C + + K CP+C T+I +++F
Sbjct: 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVITFKQKIF 73
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
L + KLC IC D FVPCGH TC C + + K CP+C T+I +++F
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVITFKQKIF 72
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
L + + C +C D + + F+PCGH C +C + K CPICR +I R F
Sbjct: 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK-----CPICRGIIKGTVRTF 343
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
L + KLC IC D FVPCGH TC C + + K CP+C T+I
Sbjct: 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDK-----CPMCYTVI 65
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
L + + C +C D + FVPCGH C +C + ++CPICR + R F
Sbjct: 10 LQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGL-----QLCPICRAPVRSRVRTF 60
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 37.0 bits (84), Expect = 0.015, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 298 CVICYDDQRNCFFV--PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350
CVIC +N V GH C+ C ++ +K +K CP+CR I + + P
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKK-LKKRNKPCPVCRQPIQMIVLTYFP 63
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 298 CVICYDDQRNCFFV--PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350
CVIC +N V GH C+ C ++ +K +K CP+CR I + + P
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKK-LKKRNKPCPVCRQPIQMIVLTYFP 64
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + D + CP CR I
Sbjct: 27 QLCKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 36.2 bits (82), Expect = 0.030, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 296 KLCVICYDDQR--NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
K C +C R N GH TC+ C +R+ K + CPIC+ I V ++F
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS-CPICKKEIQLVIKVF 61
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + D + CP CR I
Sbjct: 339 QLCKICAENDKDVKIEPCGH-LMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 34.7 bits (78), Expect = 0.077, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 28 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 34.7 bits (78), Expect = 0.078, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 25 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 335 QLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 335 QLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 333 QLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341
+LC IC ++ ++ PCGH C C + + + CP CR I
Sbjct: 333 QLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 287 TSSDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQR-IMKDDSKVCPIC 337
+ D + D LC+IC D + +PC + C +C + +++ D CP C
Sbjct: 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTC 56
>pdb|1E4U|A Chain A, N-Terminal Ring Finger Domain Of Human Not-4
Length = 78
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 286 STSSDDLYDAKLCVICYD----DQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICR 338
S S D D C +C + D N F CG+ C C RI D++ +CP CR
Sbjct: 2 SRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGY-QICRFCWHRIRTDENGLCPACR 57
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 298 CVICYDDQRNCFFVPCGHCAT--CYDCGQRIMKDDSKVCPICR 338
C IC + R+ P HC+ C+ C +R + + CP CR
Sbjct: 25 CFICXEKLRDARLCP--HCSKLCCFSCIRRWLTEQRAQCPHCR 65
>pdb|1UR6|B Chain B, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
Length = 52
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 298 CVICYD----DQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICR 338
C +C + D N F CG+ C C RI D++ +CP CR
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGY-QICRFCWHRIRTDENGLCPACR 46
>pdb|3VK6|A Chain A, Crystal Structure Of A Phosphotyrosine Binding Domain
Length = 101
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 311 VPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346
+PC H CYDC K K+CP C + ++ +
Sbjct: 18 IPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic Subunit
(Irx3) Of Cellulose Synthase
Length = 93
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 294 DAKLCVICYDD----QRNCFFVPCGHCA--TCYDCGQRIMKDDSKVCPICRTLIHKVR 345
D + C IC D FV C C C C + ++ ++ CP C+T ++R
Sbjct: 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLR 72
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 99 SSDPPALTDPIDGMI-------FVSLAFSFQMNKKSKIG-QYDVEEDDMY 140
+ +P + DPIDG FV+++ F +NKK + G Y ED MY
Sbjct: 82 TDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMY 131
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 298 CVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349
C IC + +PC H C C Q ++ S CP CR + R T
Sbjct: 18 CGICMEILVEPVTLPCNH-TLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHT 68
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 297 LCVIC---YDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
+CV+C + D + C H + C C R + + SK CPIC +HK R L
Sbjct: 17 MCVLCGGYFIDATT--IIECLH-SFCKTCIVRYL-ETSKYCPICDVQVHKTRPLL 67
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350
++K CV+C + N +PC H C C + + CP+CR + + L P
Sbjct: 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ-----CPMCRQFVQESFALSGP 65
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 297 LCVIC---YDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348
+CV+C + D + C H + C C R + + SK CPIC +HK R L
Sbjct: 13 MCVLCGGYFIDATT--IIECLH-SFCKTCIVRYL-ETSKYCPICDVQVHKTRPLL 63
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 285 SSTSSDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQ-RIMKDDSKVCPICR 338
SS D + D LC+IC D + +PC + C +C + +++ D CP C
Sbjct: 5 SSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCH 59
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 145 TNKNPRSITMTMNVNVTSKIYD--LTKAKNMCSSSNGSCRLKLLFPNSQYVILTTPSNGD 202
TN N R + +T NV + Y L K S++ G+ R + ++Y ++TP NGD
Sbjct: 292 TNYNLRVVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDFMNVYYARYHNISTPWNGD 351
Query: 203 LD 204
++
Sbjct: 352 IE 353
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 288 SSDDLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346
S L+ +C IC D +N C H C DC ++ +K CP CR + R
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLH-RFCADCIITALRSGNKECPTCRKKLVSKRS 105
Query: 347 L 347
L
Sbjct: 106 L 106
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 288 SSDDLYDAKLCVICYDDQRNCFFVP-CGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346
S L+ +C IC D +N C H C DC ++ +K CP CR + R
Sbjct: 46 SPRSLHSELMCPICLDMLKNTMTTKECLH-RFCADCIITALRSGNKECPTCRKKLVSKRS 104
Query: 347 L 347
L
Sbjct: 105 L 105
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 16/59 (27%)
Query: 296 KLCVICYDDQRNCFF--VPCGHCATC----------YDCGQR----IMKDDSKVCPICR 338
K+C+IC D+ C + + CG C Y C R + K K CP CR
Sbjct: 3 KICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPACR 61
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKV--CPICRTLIHK 343
+ L + +C IC D + + CGH C C +I + CP+C+T + K
Sbjct: 15 NKLQEEVICPICLDILQKPVTIDCGH-NFCLKCITQIGETSCGFFKCPLCKTSVRK 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,162,981
Number of Sequences: 62578
Number of extensions: 408721
Number of successful extensions: 955
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 40
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)