Query 036765
Match_columns 350
No_of_seqs 274 out of 1381
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:17:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4275 Predicted E3 ubiquitin 99.5 8.1E-16 1.8E-20 144.5 -0.9 51 294-349 299-349 (350)
2 KOG1001 Helicase-like transcri 99.5 2E-15 4.4E-20 159.3 -0.4 198 117-343 297-501 (674)
3 KOG4172 Predicted E3 ubiquitin 99.4 3.6E-14 7.8E-19 101.9 -1.1 55 296-350 8-62 (62)
4 PF13920 zf-C3HC4_3: Zinc fing 99.3 3.7E-12 8E-17 91.1 3.2 49 295-344 2-50 (50)
5 KOG1002 Nucleotide excision re 99.1 3E-11 6.5E-16 121.4 5.1 143 159-341 434-585 (791)
6 KOG4265 Predicted E3 ubiquitin 99.1 9.6E-11 2.1E-15 113.7 4.3 56 293-349 288-343 (349)
7 PLN03208 E3 ubiquitin-protein 98.9 1.5E-09 3.2E-14 98.2 4.8 55 293-348 16-87 (193)
8 PF15227 zf-C3HC4_4: zinc fing 98.8 3.6E-09 7.8E-14 73.2 3.5 39 298-337 1-42 (42)
9 KOG0823 Predicted E3 ubiquitin 98.8 9E-09 1.9E-13 94.9 5.3 55 293-348 45-103 (230)
10 KOG0317 Predicted E3 ubiquitin 98.7 4.8E-09 1E-13 99.4 3.3 51 293-345 237-287 (293)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 6.7E-09 1.5E-13 70.4 2.9 38 298-337 1-39 (39)
12 KOG1571 Predicted E3 ubiquitin 98.7 3.2E-09 6.9E-14 103.3 1.5 52 293-349 303-354 (355)
13 PHA02929 N1R/p28-like protein; 98.7 8.9E-09 1.9E-13 96.5 4.0 51 294-346 173-231 (238)
14 PF13639 zf-RING_2: Ring finge 98.7 9.4E-09 2E-13 71.4 2.1 40 297-338 2-44 (44)
15 KOG0320 Predicted E3 ubiquitin 98.6 1.2E-08 2.6E-13 90.5 2.3 52 295-348 131-186 (187)
16 PF00097 zf-C3HC4: Zinc finger 98.5 6.6E-08 1.4E-12 65.9 3.2 39 298-337 1-41 (41)
17 cd00162 RING RING-finger (Real 98.5 9.5E-08 2E-12 64.8 3.0 44 297-341 1-45 (45)
18 PHA02926 zinc finger-like prot 98.5 7.4E-08 1.6E-12 88.5 2.7 51 294-345 169-233 (242)
19 smart00504 Ubox Modified RING 98.5 1.2E-07 2.5E-12 70.3 3.3 46 296-343 2-47 (63)
20 smart00184 RING Ring finger. E 98.4 2.1E-07 4.5E-12 60.9 2.8 39 298-337 1-39 (39)
21 TIGR00599 rad18 DNA repair pro 98.4 2E-07 4.3E-12 93.3 3.3 53 289-343 20-72 (397)
22 PF14634 zf-RING_5: zinc-RING 98.4 2.8E-07 6.2E-12 64.1 2.9 41 297-339 1-44 (44)
23 KOG2164 Predicted E3 ubiquitin 98.4 2E-07 4.2E-12 94.5 2.8 48 295-343 186-237 (513)
24 PF13445 zf-RING_UBOX: RING-ty 98.2 6.2E-07 1.4E-11 62.4 2.2 36 298-335 1-43 (43)
25 COG5243 HRD1 HRD ubiquitin lig 98.2 7.9E-07 1.7E-11 86.9 3.0 47 293-341 285-344 (491)
26 COG5574 PEX10 RING-finger-cont 98.1 1E-06 2.2E-11 82.8 2.3 50 293-343 213-263 (271)
27 PF04564 U-box: U-box domain; 98.1 2.7E-06 5.9E-11 65.6 3.4 49 294-343 3-51 (73)
28 KOG0978 E3 ubiquitin ligase in 98.1 7.4E-07 1.6E-11 94.0 -0.1 55 293-348 641-697 (698)
29 KOG2177 Predicted E3 ubiquitin 98.0 1.5E-06 3.3E-11 80.5 1.1 46 292-339 10-55 (386)
30 PF12678 zf-rbx1: RING-H2 zinc 98.0 4.7E-06 1E-10 64.4 3.3 41 296-338 20-73 (73)
31 KOG1327 Copine [Signal transdu 98.0 3.8E-06 8.3E-11 86.2 3.4 78 146-234 439-520 (529)
32 KOG4439 RNA polymerase II tran 97.9 3.4E-06 7.3E-11 88.5 1.8 117 120-245 509-666 (901)
33 KOG0824 Predicted E3 ubiquitin 97.9 4.8E-06 1E-10 79.6 1.5 50 294-344 6-55 (324)
34 KOG0287 Postreplication repair 97.8 5.9E-06 1.3E-10 80.1 1.6 49 293-343 21-69 (442)
35 KOG1785 Tyrosine kinase negati 97.8 6.9E-06 1.5E-10 81.0 1.2 50 296-346 370-420 (563)
36 COG5432 RAD18 RING-finger-cont 97.8 1.1E-05 2.3E-10 76.8 2.2 49 293-343 23-71 (391)
37 KOG4628 Predicted E3 ubiquitin 97.7 1.7E-05 3.6E-10 78.0 2.9 47 296-343 230-279 (348)
38 KOG1100 Predicted E3 ubiquitin 97.7 1.3E-05 2.8E-10 74.0 1.6 46 298-348 161-206 (207)
39 KOG0802 E3 ubiquitin ligase [P 97.7 1.2E-05 2.7E-10 84.0 1.5 47 293-341 289-340 (543)
40 COG5540 RING-finger-containing 97.7 2.3E-05 4.9E-10 75.1 2.9 50 293-343 321-373 (374)
41 KOG4692 Predicted E3 ubiquitin 97.5 3.6E-05 7.8E-10 75.0 1.9 49 293-343 420-468 (489)
42 PF12861 zf-Apc11: Anaphase-pr 97.5 0.00011 2.3E-09 58.4 3.4 34 308-342 47-82 (85)
43 KOG0311 Predicted E3 ubiquitin 97.3 3.3E-05 7.2E-10 75.3 -1.4 53 292-345 40-93 (381)
44 KOG4159 Predicted E3 ubiquitin 97.3 0.00011 2.5E-09 73.7 2.2 50 292-343 81-130 (398)
45 COG5236 Uncharacterized conser 97.1 0.00047 1E-08 67.3 4.0 54 290-344 56-110 (493)
46 PF14835 zf-RING_6: zf-RING of 97.1 9.2E-05 2E-09 55.6 -0.8 45 293-341 5-50 (65)
47 TIGR00570 cdk7 CDK-activating 96.9 0.00057 1.2E-08 66.4 2.7 31 312-343 25-55 (309)
48 KOG0828 Predicted E3 ubiquitin 96.8 0.00047 1E-08 70.0 1.6 50 293-343 569-635 (636)
49 KOG1039 Predicted E3 ubiquitin 96.8 0.00053 1.2E-08 67.7 1.9 51 294-345 160-224 (344)
50 PF14570 zf-RING_4: RING/Ubox 96.6 0.00087 1.9E-08 47.6 1.4 43 298-341 1-47 (48)
51 KOG2879 Predicted E3 ubiquitin 96.6 0.0017 3.7E-08 61.7 3.7 51 292-343 236-288 (298)
52 PF14447 Prok-RING_4: Prokaryo 96.5 0.0012 2.5E-08 48.2 1.4 46 294-343 6-51 (55)
53 KOG3002 Zn finger protein [Gen 96.5 0.0011 2.3E-08 64.5 1.6 46 293-344 46-93 (299)
54 COG5152 Uncharacterized conser 96.3 0.0017 3.6E-08 59.1 1.3 49 294-344 195-243 (259)
55 KOG0297 TNF receptor-associate 96.1 0.002 4.4E-08 64.9 1.2 53 292-346 18-71 (391)
56 KOG0804 Cytoplasmic Zn-finger 96.0 0.0043 9.2E-08 62.6 2.6 45 292-340 172-220 (493)
57 KOG1813 Predicted E3 ubiquitin 96.0 0.0025 5.4E-08 61.2 0.9 48 295-344 241-288 (313)
58 KOG0825 PHD Zn-finger protein 95.9 0.0025 5.4E-08 67.9 0.5 50 294-345 122-174 (1134)
59 KOG0826 Predicted E3 ubiquitin 95.9 0.013 2.9E-07 57.0 5.4 56 293-350 298-356 (357)
60 KOG3039 Uncharacterized conser 95.2 0.015 3.3E-07 54.6 3.2 48 294-343 220-271 (303)
61 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.019 4.2E-07 54.7 3.8 49 292-343 110-162 (260)
62 KOG1814 Predicted E3 ubiquitin 95.2 0.0093 2E-07 59.7 1.7 45 293-338 182-236 (445)
63 PF07800 DUF1644: Protein of u 95.2 0.018 3.9E-07 50.8 3.3 51 295-345 2-94 (162)
64 smart00744 RINGv The RING-vari 94.9 0.022 4.9E-07 40.6 2.7 41 297-338 1-49 (49)
65 PF11789 zf-Nse: Zinc-finger o 94.6 0.025 5.4E-07 41.7 2.1 42 294-336 10-53 (57)
66 COG5175 MOT2 Transcriptional r 94.4 0.019 4E-07 56.3 1.6 47 296-343 15-65 (480)
67 KOG2660 Locus-specific chromos 93.7 0.02 4.4E-07 55.8 0.2 51 293-345 13-64 (331)
68 PF11793 FANCL_C: FANCL C-term 93.5 0.016 3.5E-07 44.3 -0.7 47 296-343 3-67 (70)
69 KOG1734 Predicted RING-contain 93.0 0.048 1E-06 52.0 1.6 50 293-343 222-282 (328)
70 PF05290 Baculo_IE-1: Baculovi 92.7 0.07 1.5E-06 45.8 2.0 49 296-345 81-135 (140)
71 COG5219 Uncharacterized conser 92.7 0.05 1.1E-06 59.5 1.3 48 294-342 1468-1523(1525)
72 COG5220 TFB3 Cdk activating ki 92.6 0.05 1.1E-06 51.0 1.0 45 294-339 9-61 (314)
73 KOG1428 Inhibitor of type V ad 92.3 0.085 1.8E-06 60.0 2.5 49 294-343 3485-3545(3738)
74 PF10272 Tmpp129: Putative tra 91.5 0.18 3.9E-06 50.3 3.6 47 295-342 271-351 (358)
75 COG5194 APC11 Component of SCF 90.8 0.22 4.8E-06 39.1 2.7 32 309-342 50-81 (88)
76 cd01459 vWA_copine_like VWA Co 90.6 0.24 5.1E-06 47.3 3.4 75 140-223 176-253 (254)
77 COG5222 Uncharacterized conser 90.4 0.13 2.8E-06 49.7 1.5 43 296-339 275-318 (427)
78 PHA02825 LAP/PHD finger-like p 90.4 0.37 8.1E-06 42.7 4.1 49 294-343 7-60 (162)
79 KOG2932 E3 ubiquitin ligase in 90.1 0.091 2E-06 51.0 0.1 34 309-346 105-138 (389)
80 KOG4445 Uncharacterized conser 89.8 0.11 2.4E-06 50.3 0.4 46 296-342 116-186 (368)
81 PHA02862 5L protein; Provision 89.7 0.36 7.9E-06 42.1 3.4 52 296-349 3-59 (156)
82 KOG3579 Predicted E3 ubiquitin 88.0 0.71 1.5E-05 44.5 4.4 35 294-329 267-305 (352)
83 PF05883 Baculo_RING: Baculovi 87.8 0.24 5.3E-06 42.7 1.1 33 295-328 26-67 (134)
84 KOG1493 Anaphase-promoting com 87.7 0.18 3.8E-06 39.3 0.2 45 297-342 33-81 (84)
85 PF10367 Vps39_2: Vacuolar sor 87.7 0.22 4.8E-06 40.1 0.8 31 294-325 77-109 (109)
86 PF03854 zf-P11: P-11 zinc fin 87.4 0.41 8.8E-06 34.0 1.8 46 297-346 4-50 (50)
87 KOG3842 Adaptor protein Pellin 86.6 0.46 1E-05 46.4 2.4 48 294-343 340-415 (429)
88 KOG0385 Chromatin remodeling c 86.5 0.13 2.9E-06 55.5 -1.5 114 116-245 331-450 (971)
89 KOG4185 Predicted E3 ubiquitin 86.1 0.4 8.8E-06 46.1 1.8 33 308-341 22-54 (296)
90 PLN03142 Probable chromatin-re 85.8 0.14 3E-06 57.7 -1.8 117 117-245 334-450 (1033)
91 KOG2817 Predicted E3 ubiquitin 85.4 0.58 1.3E-05 46.9 2.5 48 293-341 332-384 (394)
92 PHA03096 p28-like protein; Pro 84.9 0.49 1.1E-05 45.9 1.7 43 296-339 179-231 (284)
93 KOG3161 Predicted E3 ubiquitin 83.2 0.37 8.1E-06 51.0 0.1 40 294-338 10-53 (861)
94 KOG2113 Predicted RNA binding 82.9 0.94 2E-05 44.3 2.7 51 294-347 342-392 (394)
95 PF04710 Pellino: Pellino; In 80.1 0.55 1.2E-05 47.2 0.0 47 295-343 328-402 (416)
96 KOG4362 Transcriptional regula 78.3 0.5 1.1E-05 50.6 -0.9 49 294-343 20-70 (684)
97 PF07191 zinc-ribbons_6: zinc- 77.8 0.27 5.9E-06 37.7 -2.3 42 296-344 2-43 (70)
98 PLN02189 cellulose synthase 77.7 1.4 3E-05 49.4 2.2 50 294-343 33-88 (1040)
99 KOG1941 Acetylcholine receptor 77.6 0.84 1.8E-05 45.8 0.4 48 294-342 364-416 (518)
100 KOG0827 Predicted E3 ubiquitin 77.4 1.6 3.5E-05 43.8 2.3 29 312-341 25-55 (465)
101 KOG0298 DEAD box-containing he 77.1 0.72 1.6E-05 52.4 -0.2 45 294-340 1152-1197(1394)
102 COG5183 SSM4 Protein involved 76.6 1.8 3.9E-05 47.2 2.6 55 294-349 11-72 (1175)
103 KOG1940 Zn-finger protein [Gen 76.5 0.86 1.9E-05 44.0 0.1 45 296-343 159-207 (276)
104 PLN02436 cellulose synthase A 75.7 1.5 3.2E-05 49.4 1.7 50 294-343 35-90 (1094)
105 PLN02638 cellulose synthase A 75.2 2.5 5.3E-05 47.7 3.2 49 294-342 16-70 (1079)
106 KOG2113 Predicted RNA binding 73.7 0.93 2E-05 44.3 -0.4 53 294-346 135-187 (394)
107 KOG2114 Vacuolar assembly/sort 70.2 1.7 3.6E-05 47.6 0.5 44 296-344 841-885 (933)
108 KOG2930 SCF ubiquitin ligase, 69.5 2.9 6.2E-05 34.6 1.6 28 311-340 79-106 (114)
109 KOG1812 Predicted E3 ubiquitin 66.9 2.3 5E-05 43.0 0.7 34 295-329 146-183 (384)
110 PF14569 zf-UDP: Zinc-binding 66.9 4.5 9.8E-05 31.7 2.1 49 294-343 8-63 (80)
111 PLN02400 cellulose synthase 65.8 2.8 6.2E-05 47.3 1.2 50 294-343 35-90 (1085)
112 KOG0391 SNF2 family DNA-depend 64.7 0.83 1.8E-05 51.7 -3.1 116 116-244 779-903 (1958)
113 PF12906 RINGv: RING-variant d 64.1 4.8 0.0001 28.3 1.7 40 298-337 1-47 (47)
114 KOG2068 MOT2 transcription fac 62.8 4.2 9.2E-05 40.1 1.6 47 295-343 249-299 (327)
115 PLN02915 cellulose synthase A 62.5 5.2 0.00011 45.1 2.4 50 294-343 14-69 (1044)
116 KOG0825 PHD Zn-finger protein 60.6 5.3 0.00011 43.6 2.0 49 294-343 95-155 (1134)
117 KOG3113 Uncharacterized conser 59.4 8.7 0.00019 36.7 3.0 47 293-343 109-159 (293)
118 KOG2034 Vacuolar sorting prote 58.9 5.5 0.00012 44.0 1.8 35 293-328 815-851 (911)
119 KOG3899 Uncharacterized conser 57.4 5.9 0.00013 38.5 1.5 29 313-342 325-365 (381)
120 PF12124 Nsp3_PL2pro: Coronavi 57.4 5.5 0.00012 29.0 1.0 18 48-65 12-39 (66)
121 KOG3053 Uncharacterized conser 57.2 6.6 0.00014 37.5 1.8 51 293-343 18-83 (293)
122 PF02891 zf-MIZ: MIZ/SP-RING z 54.8 8.1 0.00018 27.5 1.6 44 296-340 3-50 (50)
123 KOG1815 Predicted E3 ubiquitin 54.4 6.5 0.00014 40.3 1.4 48 294-342 69-126 (444)
124 KOG3970 Predicted E3 ubiquitin 51.9 12 0.00025 35.3 2.5 50 296-346 51-109 (299)
125 PRK09919 anti-adapter protein 51.8 37 0.00079 28.6 5.2 83 115-199 12-107 (114)
126 KOG3039 Uncharacterized conser 48.7 14 0.0003 35.3 2.4 33 294-327 42-74 (303)
127 PF13240 zinc_ribbon_2: zinc-r 46.8 3.8 8.3E-05 24.5 -1.0 23 318-341 1-23 (23)
128 KOG0384 Chromodomain-helicase 45.8 5.1 0.00011 45.7 -1.0 111 118-245 541-654 (1373)
129 PF10083 DUF2321: Uncharacteri 45.4 12 0.00025 33.2 1.4 23 317-343 29-51 (158)
130 KOG3799 Rab3 effector RIM1 and 45.2 10 0.00022 32.9 0.9 28 294-326 64-91 (169)
131 COG4306 Uncharacterized protei 44.7 11 0.00023 32.4 0.9 23 317-343 29-51 (160)
132 PF08746 zf-RING-like: RING-li 43.5 23 0.00049 24.4 2.3 39 298-337 1-43 (43)
133 PF04216 FdhE: Protein involve 42.9 7.5 0.00016 37.5 -0.2 51 295-347 172-227 (290)
134 PF00176 SNF2_N: SNF2 family N 42.3 3.7 8E-05 38.4 -2.4 117 118-244 178-297 (299)
135 KOG4218 Nuclear hormone recept 41.5 15 0.00033 36.5 1.7 25 295-323 15-39 (475)
136 KOG0006 E3 ubiquitin-protein l 41.3 21 0.00046 35.3 2.5 32 294-326 220-253 (446)
137 COG5109 Uncharacterized conser 40.8 18 0.00038 35.7 1.9 46 293-339 334-384 (396)
138 COG3813 Uncharacterized protei 40.0 17 0.00037 28.2 1.4 25 314-342 28-52 (84)
139 PF01105 EMP24_GP25L: emp24/gp 39.6 9.7 0.00021 32.8 0.0 41 43-83 3-44 (183)
140 PF06906 DUF1272: Protein of u 38.6 22 0.00048 26.2 1.7 24 317-343 30-53 (57)
141 PF07975 C1_4: TFIIH C1-like d 37.2 22 0.00047 25.7 1.5 25 312-338 26-50 (51)
142 PF10146 zf-C4H2: Zinc finger- 36.7 21 0.00045 33.7 1.7 25 316-341 194-218 (230)
143 PLN02195 cellulose synthase A 33.1 38 0.00081 38.3 3.2 47 295-342 6-59 (977)
144 KOG0309 Conserved WD40 repeat- 29.7 33 0.00072 37.6 2.0 39 296-336 1029-1069(1081)
145 KOG3842 Adaptor protein Pellin 29.4 23 0.0005 34.9 0.7 42 306-348 315-357 (429)
146 KOG1952 Transcription factor N 28.3 37 0.0008 37.7 2.1 49 293-342 189-247 (950)
147 PRK03564 formate dehydrogenase 28.3 20 0.00043 35.3 0.1 44 294-339 186-234 (309)
148 TIGR01562 FdhE formate dehydro 28.0 14 0.00031 36.2 -0.9 45 294-340 183-233 (305)
149 PF09297 zf-NADH-PPase: NADH p 27.8 9.6 0.00021 24.3 -1.5 24 315-339 3-29 (32)
150 COG0068 HypF Hydrogenase matur 26.8 38 0.00083 36.9 1.9 49 293-341 99-183 (750)
151 PF10571 UPF0547: Uncharacteri 26.5 18 0.0004 22.3 -0.3 7 332-338 15-21 (26)
152 PF13248 zf-ribbon_3: zinc-rib 26.2 14 0.0003 22.5 -0.9 22 318-340 4-25 (26)
153 KOG3268 Predicted E3 ubiquitin 26.2 41 0.00088 30.6 1.6 49 294-343 164-229 (234)
154 PF12773 DZR: Double zinc ribb 25.9 31 0.00067 23.9 0.7 27 317-343 13-41 (50)
155 KOG4185 Predicted E3 ubiquitin 25.0 17 0.00038 34.8 -1.0 45 295-340 207-265 (296)
156 KOG1645 RING-finger-containing 24.9 50 0.0011 33.7 2.2 35 308-343 22-57 (463)
157 PF04423 Rad50_zn_hook: Rad50 24.8 26 0.00057 24.9 0.2 12 332-343 21-32 (54)
158 KOG4451 Uncharacterized conser 24.6 40 0.00087 31.8 1.4 25 316-341 249-273 (286)
159 PF10497 zf-4CXXC_R1: Zinc-fin 24.6 64 0.0014 26.6 2.5 44 296-339 8-69 (105)
160 KOG1815 Predicted E3 ubiquitin 23.6 32 0.00069 35.3 0.6 35 308-343 179-238 (444)
161 cd05767 IgC_MHC_II_alpha Class 23.2 2.7E+02 0.0059 22.0 5.9 46 22-71 23-81 (94)
162 PF09723 Zn-ribbon_8: Zinc rib 22.6 25 0.00055 23.9 -0.3 9 331-339 26-34 (42)
163 PF10235 Cript: Microtubule-as 21.5 41 0.00088 27.2 0.7 38 295-343 44-81 (90)
164 COG4647 AcxC Acetone carboxyla 21.1 52 0.0011 28.4 1.3 23 298-321 60-82 (165)
165 TIGR00143 hypF [NiFe] hydrogen 20.8 43 0.00094 36.7 0.9 49 293-341 66-150 (711)
166 KOG0801 Predicted E3 ubiquitin 20.1 48 0.0011 29.7 0.9 21 294-314 176-199 (205)
No 1
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.1e-16 Score=144.48 Aligned_cols=51 Identities=49% Similarity=1.209 Sum_probs=48.4
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeeccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~ 349 (350)
.+.+|.||+|+++|++|++|||++.|.+|++++ ..|||||+.|.++++||+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIVRVVRIFR 349 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHHHHHhhhc
Confidence 378999999999999999999999999999998 589999999999999996
No 2
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.50 E-value=2e-15 Score=159.30 Aligned_cols=198 Identities=15% Similarity=0.209 Sum_probs=146.3
Q ss_pred cchhhccccccceeeeecccccceeEeec-CCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEE
Q 036765 117 LAFSFQMNKKSKIGQYDVEEDDMYYFGVT-NKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVIL 195 (350)
Q Consensus 117 ~~~~~~li~~l~i~~y~~~~~~~~~~~~~-n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~ 195 (350)
+...||+++||++.||+.+..|.-.+..+ ..+...-.+ -.+++.+..+|++|+|..+++|+||+ .+|++++.+.
T Consensus 297 ~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~---k~l~~~L~~v~lrrtK~~~~~gk~i~--~lppk~v~~~ 371 (674)
T KOG1001|consen 297 LDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGV---KTLQGILKKVMLRRTKEMEVDGKPIL--ELPPKTVFVT 371 (674)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHH---HHHHHHHHHHHhcccccccccCcccc--ccCcceeEee
Confidence 45789999999999999999999888876 222211122 26788999999999999999999988 7899999999
Q ss_pred EcCCCCCccchhhhchhhHHHHH--HHH---HHHHHHHHHHHHHHHhCCCCCCCCCCCcccccccCCCCcCCCCCCcccc
Q 036765 196 TTPSNGDLDGWHVEVSFAARLII--YIA---ILGFITLIIFLVSKYLGACDGNSDNTDSTAAREVTETDPLVHEKPVQFT 270 (350)
Q Consensus 196 t~~~s~~e~~~y~el~~~~r~l~--yi~---~~G~~~~il~LlLrl~~~c~h~~~~~~~~~~~~~~e~~pl~~~~~~~~~ 270 (350)
+...+..++.||++++...+.++ |+- ....|+.+++++||+||+|+|+.+....... .+......+.
T Consensus 372 ~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~---~~~~~~~~~~----- 443 (674)
T KOG1001|consen 372 EVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDS---LGDSGSAAAL----- 443 (674)
T ss_pred eccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhc---cccccccchH-----
Confidence 99999999999999999888887 433 2334999999999999999998653321000 0000000000
Q ss_pred cCCCCCCCCCCCCCCCCCcccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 271 YGTTNNDEDDDAGFSSTSSDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 271 ~g~~~~~~~d~~~~s~~~~~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
......+......|.+|.+ ...+++++||| .+|.+|....++.. ...||+||..+..
T Consensus 444 --------------~~~~i~~l~~~~~c~ic~~-~~~~~it~c~h-~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 444 --------------IIRLIVDLSVSHWCHICCD-LDSFFITRCGH-DFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred --------------HHHHHHHHhhccccccccc-cccceeecccc-hHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 0000111112278999999 77888999999 99999999987763 3469999988764
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.6e-14 Score=101.86 Aligned_cols=55 Identities=36% Similarity=0.905 Sum_probs=51.2
Q ss_pred ceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
.+|.||++.+.|.++.-||||+.|++|..++++.....||+||++|..++|.|++
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 6799999999999999999999999999999987678899999999999998874
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.25 E-value=3.7e-12 Score=91.14 Aligned_cols=49 Identities=41% Similarity=1.069 Sum_probs=42.2
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
+..|.||++..++++++||||..+|..|+.++.+. ...||+||++|+.+
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcCC
Confidence 46799999999999999999955999999999875 68999999999864
No 5
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.15 E-value=3e-11 Score=121.45 Aligned_cols=143 Identities=16% Similarity=0.243 Sum_probs=103.9
Q ss_pred echhhhHHHHhhhccCCCCCCceeEeeccCCceEEEEEcCCCCCccchhhhchhhHHHH--HHHH---HHHHHHHHHHHH
Q 036765 159 NVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVILTTPSNGDLDGWHVEVSFAARLI--IYIA---ILGFITLIIFLV 233 (350)
Q Consensus 159 ~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~t~~~s~~e~~~y~el~~~~r~l--~yi~---~~G~~~~il~Ll 233 (350)
.+...+.++|++|+| =|+. -.+-+|+.-+-+-..-+++.|.++|..|=..++.- .||. .+..|++|..|+
T Consensus 434 ~~h~llk~ImlrrTk----l~RA-dDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~Li 508 (791)
T KOG1002|consen 434 NIHTLLKNIMLRRTK----LERA-DDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLI 508 (791)
T ss_pred HHHHHHHHHHHHHhh----cccc-cccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHH
Confidence 567899999999999 3332 12457777666655666677888998887665554 4877 355599999999
Q ss_pred HHHhCCCCCCCCCCCcccccccCCCCcCCCCCCcccccCCCCCCCCCCCCCCCCCcccccCcceeeccccccccEEEcCC
Q 036765 234 SKYLGACDGNSDNTDSTAAREVTETDPLVHEKPVQFTYGTTNNDEDDDAGFSSTSSDDLYDAKLCVICYDDQRNCFFVPC 313 (350)
Q Consensus 234 Lrl~~~c~h~~~~~~~~~~~~~~e~~pl~~~~~~~~~~g~~~~~~~d~~~~s~~~~~~~~~~~~C~IC~d~~~~~v~lpC 313 (350)
-|+||+-.||.+.+. +....++ .+..+..+|.+|.|...+.+...|
T Consensus 509 tRmRQ~aDHP~LVl~-------S~~~n~~---------------------------~enk~~~~C~lc~d~aed~i~s~C 554 (791)
T KOG1002|consen 509 TRMRQAADHPDLVLY-------SANANLP---------------------------DENKGEVECGLCHDPAEDYIESSC 554 (791)
T ss_pred HHHHHhccCcceeee-------hhhcCCC---------------------------ccccCceeecccCChhhhhHhhhh
Confidence 999999999976442 1111111 011245789999999999999999
Q ss_pred CCccccHHhHHHHhhc----CCCCCccccccc
Q 036765 314 GHCATCYDCGQRIMKD----DSKVCPICRTLI 341 (350)
Q Consensus 314 GH~~~C~~C~~~~~~~----~~~~CPiCR~~I 341 (350)
.| .||+-|+...... ....||.|-..+
T Consensus 555 hH-~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 555 HH-KFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred hH-HHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 99 9999999776553 357899997654
No 6
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.6e-11 Score=113.69 Aligned_cols=56 Identities=30% Similarity=0.810 Sum_probs=49.6
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeeccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~ 349 (350)
+...+|+||++..+|.+++||.|++.|..|+..+.-+ ...||+||++|...++|+.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecc
Confidence 4578999999999999999999999999999998633 4679999999999888763
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1.5e-09 Score=98.19 Aligned_cols=55 Identities=24% Similarity=0.645 Sum_probs=45.2
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhc---------------CCCCCccccccccc--eeecc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD---------------DSKVCPICRTLIHK--VRRLF 348 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~---------------~~~~CPiCR~~I~~--~~ri~ 348 (350)
.++.+|+||++..++++.++||| .||..|+..|... +...||+||.+|.. .+++|
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH-~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGH-LFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCc-hhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 45688999999999999999999 9999999988542 13579999999875 45554
No 8
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.81 E-value=3.6e-09 Score=73.22 Aligned_cols=39 Identities=41% Similarity=0.950 Sum_probs=31.6
Q ss_pred eeccccccccEEEcCCCCccccHHhHHHHhhcCC---CCCccc
Q 036765 298 CVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDS---KVCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~---~~CPiC 337 (350)
|+||++...+++.++||| .||..|+.++++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH-~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGH-SFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSS-EEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcC-HHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999 999999999998743 359988
No 9
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=9e-09 Score=94.87 Aligned_cols=55 Identities=29% Similarity=0.646 Sum_probs=47.4
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcC--CCCCcccccccc--ceeecc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIH--KVRRLF 348 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~--~~~ri~ 348 (350)
.....|-||+|..++++++.||| .||..|+-+|.... .+.||+|+..|+ +++.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGH-LFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGH-LFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeeccc-ceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 45789999999999999999999 89999999997752 466999998876 567776
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.8e-09 Score=99.35 Aligned_cols=51 Identities=25% Similarity=0.735 Sum_probs=45.1
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
+....|.+|++...++..+|||| .||..|+..|... +..||.||+++....
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGH-iFCWsCI~~w~~e-k~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGH-IFCWSCILEWCSE-KAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcc-hHHHHHHHHHHcc-ccCCCcccccCCCcc
Confidence 34578999999999999999999 9999999999876 577999999988643
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.74 E-value=6.7e-09 Score=70.43 Aligned_cols=38 Identities=37% Similarity=1.097 Sum_probs=33.4
Q ss_pred eeccccccccE-EEcCCCCccccHHhHHHHhhcCCCCCccc
Q 036765 298 CVICYDDQRNC-FFVPCGHCATCYDCGQRIMKDDSKVCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~~-v~lpCGH~~~C~~C~~~~~~~~~~~CPiC 337 (350)
|+||++...++ ++++||| .||.+|+.++.+. ..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH-~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGH-SFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSE-EEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCC-chhHHHHHHHHHC-cCCCcCC
Confidence 89999999998 6899999 8999999999888 6899998
No 12
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.2e-09 Score=103.30 Aligned_cols=52 Identities=38% Similarity=1.012 Sum_probs=47.4
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeeccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~ 349 (350)
.....|.||.+++.+++|+||||++.|..|...+ ..||+||+.|..++++|.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l-----~~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL-----PQCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhC-----CCCchhHHHHHHHHHHhc
Confidence 3567899999999999999999999999998887 679999999999999885
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.72 E-value=8.9e-09 Score=96.48 Aligned_cols=51 Identities=29% Similarity=0.708 Sum_probs=42.1
Q ss_pred Ccceeecccccccc--------EEEcCCCCccccHHhHHHHhhcCCCCCccccccccceee
Q 036765 294 DAKLCVICYDDQRN--------CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346 (350)
Q Consensus 294 ~~~~C~IC~d~~~~--------~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~r 346 (350)
.+.+|+||++...+ .+..+||| .||.+|+.+|.+. ...||+||.++..+++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H-~FC~~CI~~Wl~~-~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNH-VFCIECIDIWKKE-KNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCC-cccHHHHHHHHhc-CCCCCCCCCEeeEEee
Confidence 45789999997543 35678999 9999999998775 6889999999987654
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.67 E-value=9.4e-09 Score=71.41 Aligned_cols=40 Identities=33% Similarity=0.865 Sum_probs=34.3
Q ss_pred eeecccccc---ccEEEcCCCCccccHHhHHHHhhcCCCCCcccc
Q 036765 297 LCVICYDDQ---RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICR 338 (350)
Q Consensus 297 ~C~IC~d~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR 338 (350)
+|+||++.. ..++.++||| .||.+|+..|.+. ...||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H-~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGH-VFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSE-EEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCC-eeCHHHHHHHHHh-CCcCCccC
Confidence 599999986 3477889999 9999999999887 57999998
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=90.55 Aligned_cols=52 Identities=31% Similarity=0.760 Sum_probs=42.9
Q ss_pred cceeecccccccc--EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc--eeecc
Q 036765 295 AKLCVICYDDQRN--CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK--VRRLF 348 (350)
Q Consensus 295 ~~~C~IC~d~~~~--~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~ri~ 348 (350)
-..|||||+.... ++-+.||| +||..|++...+. ..+||+||..|+. +.+||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGH-vFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGH-VFCSQCIKDALKN-TNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccch-hHHHHHHHHHHHh-CCCCCCcccccchhhheecc
Confidence 4679999998665 45579999 9999999998776 6889999998875 46665
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.53 E-value=6.6e-08 Score=65.86 Aligned_cols=39 Identities=36% Similarity=1.019 Sum_probs=35.2
Q ss_pred eeccccccccEE-EcCCCCccccHHhHHHHhh-cCCCCCccc
Q 036765 298 CVICYDDQRNCF-FVPCGHCATCYDCGQRIMK-DDSKVCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~-~~~~~CPiC 337 (350)
|+||++...++. +++||| .||..|+.++++ .....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H-~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGH-SFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSE-EEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCC-cchHHHHHHHHHhcCCccCCcC
Confidence 899999999988 999999 899999999988 446779998
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.49 E-value=9.5e-08 Score=64.85 Aligned_cols=44 Identities=39% Similarity=0.984 Sum_probs=35.7
Q ss_pred eeeccccccccEE-EcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 297 LCVICYDDQRNCF-FVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 297 ~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
.|+||++...+.+ +.+||| .||..|+..+.+.....||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H-~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGH-VFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCC-hhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999985544 445999 8999999998776457899999764
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.47 E-value=7.4e-08 Score=88.49 Aligned_cols=51 Identities=31% Similarity=0.660 Sum_probs=39.8
Q ss_pred Ccceeecccccc---------ccEEEcCCCCccccHHhHHHHhhcC-----CCCCcccccccccee
Q 036765 294 DAKLCVICYDDQ---------RNCFFVPCGHCATCYDCGQRIMKDD-----SKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~---------~~~v~lpCGH~~~C~~C~~~~~~~~-----~~~CPiCR~~I~~~~ 345 (350)
.+.+|+||++.. +-.++.+|+| .||..|+..|.+.. ...||+||+.+..+.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnH-sFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNH-IFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCc-hHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 457899999863 1256779999 99999999997642 245999999987653
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.47 E-value=1.2e-07 Score=70.28 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=41.8
Q ss_pred ceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..|+||.+...+++.++||| .||++|+.+++.. ...||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~-v~~~~~i~~~~~~-~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQ-TYERRAIEKWLLS-HGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCC-EEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence 46999999999999999999 9999999999887 6789999998853
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.40 E-value=2.1e-07 Score=60.94 Aligned_cols=39 Identities=36% Similarity=1.071 Sum_probs=34.6
Q ss_pred eeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccc
Q 036765 298 CVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiC 337 (350)
|+||++...+++.++||| .||..|+..+.+.....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H-~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGH-TFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCC-hHHHHHHHHHHHhCcCCCCCC
Confidence 889999988999999999 899999999987445779987
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.37 E-value=2e-07 Score=93.33 Aligned_cols=53 Identities=26% Similarity=0.512 Sum_probs=46.0
Q ss_pred cccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 289 SDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 289 ~~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...++....|+||.+...++++++||| .||..|+..++.. ...||.||..+..
T Consensus 20 l~~Le~~l~C~IC~d~~~~PvitpCgH-~FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFDVPVLTSCSH-TFCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccCCCcCchhhhCccCCCCCC-chhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 344567789999999999999999999 9999999998876 4679999998764
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2.8e-07 Score=64.13 Aligned_cols=41 Identities=37% Similarity=0.914 Sum_probs=34.1
Q ss_pred eeecccccc---ccEEEcCCCCccccHHhHHHHhhcCCCCCccccc
Q 036765 297 LCVICYDDQ---RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRT 339 (350)
Q Consensus 297 ~C~IC~d~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~ 339 (350)
.|+||++.. ..+.+++||| .||..|+..+. .....||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH-~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGH-IFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCC-HHHHHHHHhhc-CCCCCCcCCCC
Confidence 489998877 3478899999 99999999996 22578999985
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2e-07 Score=94.46 Aligned_cols=48 Identities=29% Similarity=0.580 Sum_probs=43.4
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcC----CCCCccccccccc
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD----SKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~----~~~CPiCR~~I~~ 343 (350)
+..||||++.+.-++.+.||| .||..|+-++|... -..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGH-iFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGH-IFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCc-eeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 788999999999999999999 99999999998873 3579999999987
No 24
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.23 E-value=6.2e-07 Score=62.37 Aligned_cols=36 Identities=39% Similarity=0.922 Sum_probs=22.2
Q ss_pred eecccccccc----EEEcCCCCccccHHhHHHHhhcC---CCCCc
Q 036765 298 CVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDD---SKVCP 335 (350)
Q Consensus 298 C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~---~~~CP 335 (350)
|+||.+ ..+ ++.++||| .+|.+|+.++.... .-+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH-~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGH-VFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS--EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCcc-HHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 766 88899999 99999999998852 33576
No 25
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.9e-07 Score=86.89 Aligned_cols=47 Identities=30% Similarity=0.737 Sum_probs=39.3
Q ss_pred cCcceeeccccccc-------------cEEEcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 293 YDAKLCVICYDDQR-------------NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 293 ~~~~~C~IC~d~~~-------------~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
+++..|.||+|+.- .+.-+|||| ++..+|++.|.++ +..||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGH-ilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGH-ILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccc-eeeHHHHHHHHHh-ccCCCcccCcc
Confidence 35678999999821 245689999 9999999999887 78999999984
No 26
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1e-06 Score=82.79 Aligned_cols=50 Identities=24% Similarity=0.652 Sum_probs=41.6
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCC-CCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDS-KVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~-~~CPiCR~~I~~ 343 (350)
..+..|+||++.+.++..+|||| .||..|+-..|...+ ..||.||+.+..
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgH-lFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGH-LFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccc-hhhHHHHHHHHHhhccccCchhhhhccc
Confidence 34678999999999999999999 999999998444323 459999998764
No 27
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.09 E-value=2.7e-06 Score=65.62 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=40.2
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...|+||.+.+.+++.+|||| .+++.|+.++.......||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~-tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGH-TYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSE-EEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCC-EEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 5689999999999999999999 999999999988766889999998875
No 28
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=7.4e-07 Score=94.03 Aligned_cols=55 Identities=24% Similarity=0.632 Sum_probs=48.3
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc--eeecc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK--VRRLF 348 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~ri~ 348 (350)
..-..|++|-+.+++++++.||| +||..|.....+.+..+||.|..++.. +.+||
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H-~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGH-VFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcch-HHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 45689999999999999999999 999999999877767899999999864 66665
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=1.5e-06 Score=80.46 Aligned_cols=46 Identities=35% Similarity=0.834 Sum_probs=40.6
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRT 339 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~ 339 (350)
..+...|+||++..+++..+|||| .||..|+..++. ....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H-~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGH-NFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccc-hHhHHHHHHhcC-CCcCCcccCC
Confidence 346788999999999999999999 999999999987 3578999993
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.01 E-value=4.7e-06 Score=64.41 Aligned_cols=41 Identities=32% Similarity=0.861 Sum_probs=32.2
Q ss_pred ceeecccccc-------------ccEEEcCCCCccccHHhHHHHhhcCCCCCcccc
Q 036765 296 KLCVICYDDQ-------------RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICR 338 (350)
Q Consensus 296 ~~C~IC~d~~-------------~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR 338 (350)
..|.||++.. ..++..+||| .|...|+.+|.+. ...||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H-~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGH-IFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSE-EEEHHHHHHHHTT-SSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCC-CEEHHHHHHHHhc-CCcCCCCC
Confidence 3499999875 2245668999 9999999999877 56999998
No 31
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=97.99 E-value=3.8e-06 Score=86.23 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEe----eccCCceEEEEEcCCCCCccchhhhchhhHHHHHHHH
Q 036765 146 NKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLK----LLFPNSQYVILTTPSNGDLDGWHVEVSFAARLIIYIA 221 (350)
Q Consensus 146 n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~----l~f~~~q~vv~t~~~s~~e~~~y~el~~~~r~l~yi~ 221 (350)
+..|.||++ ||||+..|++|+.+++ |++.... +.+|++|||.|+..+++.++.+-++.+++..+|++|+
T Consensus 439 S~lPlSIIi---VGVGd~df~~M~~lD~----d~~~l~~~gr~~~rD~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP 511 (529)
T KOG1327|consen 439 SDLPLSIII---VGVGDADFDMMRELDG----DDPKLRSPGRIAERDNVQFVPFRDIMNGAENPSDKEAALALAVLAEIP 511 (529)
T ss_pred ccCCeEEEE---EEeCCCCHHHHHHhhc----CCcccccccccccccceEeecHHHHhhcCCcccchhHHHHHHHHHHhh
Confidence 688999999 9999999999999998 5544333 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 036765 222 ILGFITLIIFLVS 234 (350)
Q Consensus 222 ~~G~~~~il~LlL 234 (350)
.|.+ .|+.+
T Consensus 512 ~Q~~----~y~~~ 520 (529)
T KOG1327|consen 512 QQYV----QYMRL 520 (529)
T ss_pred HHHH----HHHHh
Confidence 9998 45555
No 32
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.93 E-value=3.4e-06 Score=88.50 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=82.5
Q ss_pred hhccccccceeeeecccccceeEeecCCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEEEcCC
Q 036765 120 SFQMNKKSKIGQYDVEEDDMYYFGVTNKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVILTTPS 199 (350)
Q Consensus 120 ~~~li~~l~i~~y~~~~~~~~~~~~~n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~t~~~ 199 (350)
-|+|++|||+.||.+.+.-.. |.++.+..+. =+|.=+...+|++|+|.-+-.+..+. .+|++++.+-+..+
T Consensus 509 vysLlrFLr~~pF~D~~~Wke-----~i~~~s~~g~--~rlnll~K~LmLRRTKdQl~a~~klv--~Lp~k~i~l~~leL 579 (901)
T KOG4439|consen 509 VYSLLRFLRCPPFGDLKQWKE-----NIDNMSKGGA--NRLNLLTKSLMLRRTKDQLQANGKLV--NLPEKNIELHELEL 579 (901)
T ss_pred HHHHHHHhcCCCcchHHHHHH-----hccCccccch--hhhhhhhhhHHhhhhHHhhccccccc--cCcccceEEEEEee
Confidence 699999999999986655443 3444444442 22333678889999886664445544 58899999999999
Q ss_pred CCCccchhhhchhhHHHHH-H-HHH---------------------------------------HHHHHHHHHHHHHHhC
Q 036765 200 NGDLDGWHVEVSFAARLII-Y-IAI---------------------------------------LGFITLIIFLVSKYLG 238 (350)
Q Consensus 200 s~~e~~~y~el~~~~r~l~-y-i~~---------------------------------------~G~~~~il~LlLrl~~ 238 (350)
+++|..-|.-+.-+.+-++ . +.. .-+.++||.||+||||
T Consensus 580 s~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ 659 (901)
T KOG4439|consen 580 SGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQ 659 (901)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHH
Confidence 9999988887765554443 2 210 0124679999999999
Q ss_pred CCCCCCC
Q 036765 239 ACDGNSD 245 (350)
Q Consensus 239 ~c~h~~~ 245 (350)
+|||+.+
T Consensus 660 ~ccH~~~ 666 (901)
T KOG4439|consen 660 ACCHFGL 666 (901)
T ss_pred HhcCcch
Confidence 9999954
No 33
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.8e-06 Score=79.60 Aligned_cols=50 Identities=34% Similarity=0.697 Sum_probs=43.2
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
...+|+||+.....++.++|+| .||+.|++-....+...|++||++|+..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~H-kFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFH-KFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCCcCccccccc-hhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 3467999999988899999999 9999999887666567799999999864
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.85 E-value=5.9e-06 Score=80.05 Aligned_cols=49 Identities=24% Similarity=0.611 Sum_probs=44.0
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.+-..|-||.+-++.++++|||| .||.-|+..+... ...||.|+.++..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsH-tfCSlCIR~~L~~-~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSH-TFCSLCIRKFLSY-KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccc-hHHHHHHHHHhcc-CCCCCceecccch
Confidence 45578999999999999999999 9999999999877 6899999988764
No 35
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.79 E-value=6.9e-06 Score=81.02 Aligned_cols=50 Identities=32% Similarity=0.808 Sum_probs=44.1
Q ss_pred ceeeccccccccEEEcCCCCccccHHhHHHHhhcC-CCCCccccccccceee
Q 036765 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIHKVRR 346 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~~~r 346 (350)
.+|.||-++.+|+.+-|||| ..|..|+..|.... ...||.||..|....+
T Consensus 370 eLCKICaendKdvkIEPCGH-LlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGH-LLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccc-hHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 68999999999999999999 89999999997664 5789999999987543
No 36
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.78 E-value=1.1e-05 Score=76.83 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=42.9
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.....|-||-+..+.++.++||| .||.-|+.+.... ...||.||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgH-tFCslCIR~hL~~-qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGH-TFCSLCIRRHLGT-QPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceeccccc-chhHHHHHHHhcC-CCCCccccccHHh
Confidence 34578999999999999999999 9999999998776 6889999987543
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.7e-05 Score=78.04 Aligned_cols=47 Identities=26% Similarity=0.709 Sum_probs=39.8
Q ss_pred ceeecccccccc---EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 296 KLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 296 ~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..|+||+|..+. ...+||+| .|...|+..|.......||+|++.+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H-~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSH-KFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCC-chhhccchhhHhhcCccCCCCCCcCCC
Confidence 589999998654 56789999 999999999988754569999998765
No 38
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.3e-05 Score=73.98 Aligned_cols=46 Identities=26% Similarity=0.755 Sum_probs=41.3
Q ss_pred eeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecc
Q 036765 298 CVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348 (350)
Q Consensus 298 C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~ 348 (350)
|..|.+....++++||.|+++|..|.... ..||+|+.+......+|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~-----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDESL-----RICPICRSPKTSSVEVN 206 (207)
T ss_pred ceecCcCCceEEeecccceEecccccccC-----ccCCCCcChhhceeecc
Confidence 99999999999999999999999998763 66999999998877765
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=1.2e-05 Score=84.04 Aligned_cols=47 Identities=30% Similarity=0.785 Sum_probs=41.4
Q ss_pred cCcceeecccccccc-----EEEcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 293 YDAKLCVICYDDQRN-----CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~-----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
..+..|+||+|.... +..+|||| .||..|+..|.++ ...||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~H-ifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGH-IFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeeccc-chHHHHHHHHHHH-hCcCCcchhhh
Confidence 456789999999877 67889999 9999999999998 78999999843
No 40
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=2.3e-05 Score=75.10 Aligned_cols=50 Identities=28% Similarity=0.582 Sum_probs=40.6
Q ss_pred cCcceeeccccccc---cEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQR---NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...-+|.||+.... ..+.+||.| .|...|+..|...-+.+||+||.++..
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H-~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDH-RFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCc-eechhHHHHHHhhhcccCCccCCCCCC
Confidence 45578999998743 266789999 999999999977446789999998753
No 41
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=3.6e-05 Score=75.04 Aligned_cols=49 Identities=35% Similarity=0.880 Sum_probs=43.7
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.++..||||+..+.+.+|.||+| .-|+.|+.+...+ .+.|-.|...+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H-~SC~~CI~qHlmN-~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSH-RSCYGCITQHLMN-CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCC-chHHHHHHHHHhc-CCeeeEecceeee
Confidence 46789999999999999999999 8999999998776 6889999988764
No 42
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.47 E-value=0.00011 Score=58.37 Aligned_cols=34 Identities=21% Similarity=0.535 Sum_probs=28.2
Q ss_pred EEEcCCCCccccHHhHHHHhhcC--CCCCcccccccc
Q 036765 308 CFFVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIH 342 (350)
Q Consensus 308 ~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~ 342 (350)
.+.-.|+| .|..-|+.++.+.. +..||+||++..
T Consensus 47 lv~g~C~H-~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSH-NFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCcc-HHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 34568999 99999999998863 478999999865
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=3.3e-05 Score=75.35 Aligned_cols=53 Identities=25% Similarity=0.610 Sum_probs=43.5
Q ss_pred ccCcceeeccccccccEE-EcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 292 LYDAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
+..+..|+||++-.+... ...|+| .||.+|+..-.+.....||.||+.....+
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClh-rfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLH-RFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHH-HHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 356788999999987754 446999 89999999988876788999999876543
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00011 Score=73.73 Aligned_cols=50 Identities=26% Similarity=0.716 Sum_probs=43.7
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+.+|.||+...-.++.+|||| .+|..|+.+..+. ...||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcgh-s~c~~Cl~r~ld~-~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGH-SFCLECLDRSLDQ-ETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccc-cccHHHHHHHhcc-CCCCccccccccc
Confidence 357899999999999999999999 9999999887665 6889999988764
No 45
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.09 E-value=0.00047 Score=67.27 Aligned_cols=54 Identities=33% Similarity=0.626 Sum_probs=42.9
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhc-CCCCCccccccccce
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD-DSKVCPICRTLIHKV 344 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~-~~~~CPiCR~~I~~~ 344 (350)
+..++...|.||-+...-...+||+| .+|..|+.++.-- ..+.||+||..-+.+
T Consensus 56 dtDEen~~C~ICA~~~TYs~~~PC~H-~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTTYSARYPCGH-QICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCceEEEeccCCc-hHHHHHHHHHHHHHhccCCCccccccceE
Confidence 33467889999988887788899999 8999999887332 357899999876554
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.07 E-value=9.2e-05 Score=55.58 Aligned_cols=45 Identities=27% Similarity=0.643 Sum_probs=25.0
Q ss_pred cCcceeeccccccccEE-EcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 293 YDAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
++...|.+|.+-.+.++ +..|.| .||..|+.+... ..||+|+.|-
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH-~fCs~Ci~~~~~---~~CPvC~~Pa 50 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEH-IFCSSCIRDCIG---SECPVCHTPA 50 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTT---TB-SSS--B-
T ss_pred HHhcCCcHHHHHhcCCceeccCcc-HHHHHHhHHhcC---CCCCCcCChH
Confidence 45578999999999986 579999 999999977533 4699999885
No 47
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.90 E-value=0.00057 Score=66.42 Aligned_cols=31 Identities=35% Similarity=0.804 Sum_probs=27.5
Q ss_pred CCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 312 PCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 312 pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+||| .||..|+.+++..+...||.|+.++..
T Consensus 25 ~CGH-~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGH-TLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCC-cccHHHHHHHhcCCCCCCCCCCCccch
Confidence 8999 999999999987766789999988765
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00047 Score=69.96 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=39.1
Q ss_pred cCcceeecccccc-----------------ccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQ-----------------RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~-----------------~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+....|+||+... ++-.++||.| .|...|+.+|.+.-+-.||.||.++..
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~H-ifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHH-IFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHH-HHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3457899999752 2344679999 999999999988434589999998754
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.00053 Score=67.73 Aligned_cols=51 Identities=31% Similarity=0.666 Sum_probs=40.6
Q ss_pred CcceeeccccccccEE-----E---cCCCCccccHHhHHHHhhcC------CCCCcccccccccee
Q 036765 294 DAKLCVICYDDQRNCF-----F---VPCGHCATCYDCGQRIMKDD------SKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v-----~---lpCGH~~~C~~C~~~~~~~~------~~~CPiCR~~I~~~~ 345 (350)
.+..|.||++...+.. + .+|-| .||..|+..|.... ...||+||.+...+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H-~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNH-SFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcch-hhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 5688999999876655 4 68999 99999999986432 367999999876543
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.65 E-value=0.00087 Score=47.64 Aligned_cols=43 Identities=28% Similarity=0.727 Sum_probs=21.9
Q ss_pred eecccccc--ccEEEc--CCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 298 CVICYDDQ--RNCFFV--PCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 298 C~IC~d~~--~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
||+|.+.. .+.-|. +||+ ..|..|..++.+.....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf-~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGF-QICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCC-cHHHHHHHHHHhccCCCCCCCCCCC
Confidence 67777664 223344 5799 8999999999875568999999874
No 51
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0017 Score=61.66 Aligned_cols=51 Identities=25% Similarity=0.518 Sum_probs=39.7
Q ss_pred ccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
...+.+|++|-+.+..+... +||| .+|+.|+..-...+ .-.||.|..+...
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~H-iyCY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGH-IYCYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccc-eeehhhhhhhhcchhhcccCccCCCCcc
Confidence 34678999999999887655 5999 99999997753321 3589999988764
No 52
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.52 E-value=0.0012 Score=48.18 Aligned_cols=46 Identities=28% Similarity=0.596 Sum_probs=37.3
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....|..|.......+++|||| ..|..|..-. + -..||+|.++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH-~I~~~~f~~~-r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGH-LICDNCFPGE-R--YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccc-eeeccccChh-h--ccCCCCCCCcccC
Confidence 3467999988888888889999 8999997654 1 2679999999875
No 53
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.51 E-value=0.0011 Score=64.51 Aligned_cols=46 Identities=33% Similarity=0.863 Sum_probs=39.3
Q ss_pred cCcceeeccccccccEEEcCC--CCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 293 YDAKLCVICYDDQRNCFFVPC--GHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpC--GH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
.+-.+||||++....+++ .| || ..|..|..+. ..+||.||.+|..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGH-laCssC~~~~----~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGH-LACSSCRTKV----SNKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCc-Eehhhhhhhh----cccCCccccccccH
Confidence 456789999999998877 77 89 8999999876 57899999999854
No 54
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.29 E-value=0.0017 Score=59.11 Aligned_cols=49 Identities=27% Similarity=0.537 Sum_probs=40.9
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
-.+.|.||-...+.++...||| .||..|+.+-.+. ...|-+|.......
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH-~FC~~Cai~~y~k-g~~C~~Cgk~t~G~ 243 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGH-SFCSLCAIRKYQK-GDECGVCGKATYGR 243 (259)
T ss_pred Cceeehhchhhccchhhhhcch-hHHHHHHHHHhcc-CCcceecchhhccc
Confidence 3579999999999999999999 9999999876544 57899998765543
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.14 E-value=0.002 Score=64.94 Aligned_cols=53 Identities=28% Similarity=0.679 Sum_probs=44.7
Q ss_pred ccCcceeeccccccccEEE-cCCCCccccHHhHHHHhhcCCCCCccccccccceee
Q 036765 292 LYDAKLCVICYDDQRNCFF-VPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~-lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~r 346 (350)
..++..|++|....++++. ..||| .||..|+..+... ...||.||+.+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh-~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGH-RFCAGCLLESLSN-HQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCC-cccccccchhhcc-CcCCcccccccchhhc
Confidence 3466889999999999988 49999 9999999998766 6899999988765443
No 56
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.99 E-value=0.0043 Score=62.60 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=36.1
Q ss_pred ccCcceeecccccccc----EEEcCCCCccccHHhHHHHhhcCCCCCcccccc
Q 036765 292 LYDAKLCVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
..+-..||||++.... ++.+.|.| .|...|+..|+. ..||+||--
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~H-sfh~~cl~~w~~---~scpvcR~~ 220 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNH-SFHCSCLMKWWD---SSCPVCRYC 220 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeeccc-ccchHHHhhccc---CcChhhhhh
Confidence 4466789999988654 35679999 999999999965 579999843
No 57
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.0025 Score=61.19 Aligned_cols=48 Identities=23% Similarity=0.505 Sum_probs=41.3
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
.+.|-||.....+++...||| .||..|+..-.+. ...|++|.+.+..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h-~fc~~ca~~~~qk-~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGH-YFCEVCALKPYQK-GEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCc-eeehhhhcccccc-CCcceecccccccc
Confidence 466999999999999999999 9999998776554 57899999988764
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.87 E-value=0.0025 Score=67.88 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=40.0
Q ss_pred CcceeeccccccccE---EEcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 294 DAKLCVICYDDQRNC---FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~---v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
....|++|+....+- .-.+|+| .||..|+..|.+. ...||+||..+..++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-~FC~~Ci~sWsR~-aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-YFCEECVGSWSRC-AQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-ccHHHHhhhhhhh-cccCchhhhhhheee
Confidence 346799998876663 2458999 9999999999776 688999999887654
No 59
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.013 Score=57.01 Aligned_cols=56 Identities=23% Similarity=0.545 Sum_probs=42.4
Q ss_pred cCcceeeccccccccE-EEcCCCCccccHHhHHHHhhcCCCCCccc--cccccceeecccC
Q 036765 293 YDAKLCVICYDDQRNC-FFVPCGHCATCYDCGQRIMKDDSKVCPIC--RTLIHKVRRLFTP 350 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~-v~lpCGH~~~C~~C~~~~~~~~~~~CPiC--R~~I~~~~ri~~p 350 (350)
.+...||+|+....++ ++.--|- +||+.|+-..... .+.||+- ...++..+|+|.+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGy-VfCY~Ci~~Yv~~-~~~CPVT~~p~~v~~l~rl~~~ 356 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGY-VFCYPCIFSYVVN-YGHCPVTGYPASVDHLIRLFNK 356 (357)
T ss_pred CccccChhHHhccCCCceEEecce-EEeHHHHHHHHHh-cCCCCccCCcchHHHHHHHhcC
Confidence 4567899999887764 4445688 9999999998775 6889974 4555667777754
No 60
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.015 Score=54.58 Aligned_cols=48 Identities=19% Similarity=0.493 Sum_probs=40.3
Q ss_pred Ccceeecccccccc----EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....||||.|...+ .++-|||| ++|.+|..++.+. ...||+|-.+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~-Vv~~ecvEklir~-D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGH-VVTKECVEKLIRK-DMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCc-EeeHHHHHHhccc-cccccCCCCcCcc
Confidence 45799999998665 45679999 9999999999776 5789999988765
No 61
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.20 E-value=0.019 Score=54.70 Aligned_cols=49 Identities=18% Similarity=0.420 Sum_probs=39.4
Q ss_pred ccCcceeeccccccc----cEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQR----NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~----~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
......|||+...+. -+.+.|||| +++..++..+. ....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~-V~s~~alke~k--~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGC-VFSEKALKELK--KSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCC-EeeHHHHHhhc--ccccccccCCcccc
Confidence 345689999988763 356779999 99999999994 24679999999875
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.0093 Score=59.66 Aligned_cols=45 Identities=27% Similarity=0.628 Sum_probs=34.1
Q ss_pred cCcceeecccccccc---EEEcCCCCccccHHhHHHHhhc-------CCCCCcccc
Q 036765 293 YDAKLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKD-------DSKVCPICR 338 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~-------~~~~CPiCR 338 (350)
.....|.||++...- ..++||+| +||..|.....+. ...+||-|.
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~H-v~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSH-VFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hhcccceeeehhhcCcceeeecccch-HHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 345789999998654 77999999 9999999887553 124577654
No 63
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.18 E-value=0.018 Score=50.76 Aligned_cols=51 Identities=24% Similarity=0.575 Sum_probs=35.3
Q ss_pred cceeeccccccccEEEcCCC-Ccc-----------ccHHhHHHHhhc------------------------------CCC
Q 036765 295 AKLCVICYDDQRNCFFVPCG-HCA-----------TCYDCGQRIMKD------------------------------DSK 332 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCG-H~~-----------~C~~C~~~~~~~------------------------------~~~ 332 (350)
+-.||||||.+-+.++|-|. |-. -...|+.++.+. ..-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 35699999999999998773 211 135677776442 023
Q ss_pred CCcccccccccee
Q 036765 333 VCPICRTLIHKVR 345 (350)
Q Consensus 333 ~CPiCR~~I~~~~ 345 (350)
.||+||+.|..-.
T Consensus 82 ~CPLCRG~V~GWt 94 (162)
T PF07800_consen 82 ACPLCRGEVKGWT 94 (162)
T ss_pred cCccccCceeceE
Confidence 5999999987643
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.95 E-value=0.022 Score=40.55 Aligned_cols=41 Identities=32% Similarity=0.842 Sum_probs=32.3
Q ss_pred eeecccc--ccccEEEcCCC-----CccccHHhHHHHhhcC-CCCCcccc
Q 036765 297 LCVICYD--DQRNCFFVPCG-----HCATCYDCGQRIMKDD-SKVCPICR 338 (350)
Q Consensus 297 ~C~IC~d--~~~~~v~lpCG-----H~~~C~~C~~~~~~~~-~~~CPiCR 338 (350)
.|.||++ ...++.+.||. | .+...|+.+|.... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~-~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLK-YVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchh-HHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889997 45667788995 6 68999999998763 45799994
No 65
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.55 E-value=0.025 Score=41.67 Aligned_cols=42 Identities=21% Similarity=0.339 Sum_probs=28.9
Q ss_pred CcceeeccccccccEEE-cCCCCccccHHhHHHHhhc-CCCCCcc
Q 036765 294 DAKLCVICYDDQRNCFF-VPCGHCATCYDCGQRIMKD-DSKVCPI 336 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~-lpCGH~~~C~~C~~~~~~~-~~~~CPi 336 (350)
....|||.+....+++. ..||| .|.++.+.++... ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H-~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGH-TFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS---EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCC-eecHHHHHHHHHhcCCCCCCC
Confidence 35789999999999876 48999 9999999999843 3467998
No 66
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.44 E-value=0.019 Score=56.28 Aligned_cols=47 Identities=28% Similarity=0.658 Sum_probs=36.1
Q ss_pred ceeecccccccc----EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 296 KLCVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 296 ~~C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.-||.|++.... -.--|||. ..|..|...+.+.-.++||-||+..+.
T Consensus 15 d~cplcie~mditdknf~pc~cgy-~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 15 DYCPLCIEPMDITDKNFFPCPCGY-QICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccCcccccccccccCCcccCCccc-HHHHHHHHHHHhhccCCChHhhhhccc
Confidence 449999987532 23347898 899999999866656899999998764
No 67
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=93.67 E-value=0.02 Score=55.81 Aligned_cols=51 Identities=27% Similarity=0.604 Sum_probs=42.7
Q ss_pred cCcceeeccccccccEE-EcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 293 YDAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
.....|.+|-.-..|+. +.-|=| .||..|+.+.+.. ...||.|...|....
T Consensus 13 n~~itC~LC~GYliDATTI~eCLH-TFCkSCivk~l~~-~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLH-TFCKSCIVKYLEE-SKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecchhHHHHHH-HHHHHHHHHHHHH-hccCCccceeccCcc
Confidence 45578999999888864 456999 9999999999887 688999999887653
No 68
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.47 E-value=0.016 Score=44.33 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=23.5
Q ss_pred ceeeccccccc-c---EEE----cCCCCccccHHhHHHHhhc----C------CCCCccccccccc
Q 036765 296 KLCVICYDDQR-N---CFF----VPCGHCATCYDCGQRIMKD----D------SKVCPICRTLIHK 343 (350)
Q Consensus 296 ~~C~IC~d~~~-~---~v~----lpCGH~~~C~~C~~~~~~~----~------~~~CPiCR~~I~~ 343 (350)
.+|.||+...- + +.. -.|++ .|...|+.+|... + .+.||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~-~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGK-KFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCC-HHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 56999997643 2 221 26888 8999999999764 1 2469999998863
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.048 Score=51.97 Aligned_cols=50 Identities=18% Similarity=0.479 Sum_probs=38.7
Q ss_pred cCcceeeccccccc----------cEEEcCCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 293 YDAKLCVICYDDQR----------NCFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~----------~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
.++..|.||-...- +.--+.|+| +|...|+.-|.-.+ ++.||-|...++.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnH-vFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNH-VFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeeccc-chHHHhhhhheeecCCCCCchHHHHhhH
Confidence 46678999954422 344689999 99999999986653 4679999998875
No 70
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.70 E-value=0.07 Score=45.79 Aligned_cols=49 Identities=29% Similarity=0.628 Sum_probs=40.6
Q ss_pred ceeeccccccccEEEcC----CCCccccHHhHHHHhhcC--CCCCcccccccccee
Q 036765 296 KLCVICYDDQRNCFFVP----CGHCATCYDCGQRIMKDD--SKVCPICRTLIHKVR 345 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lp----CGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~~~ 345 (350)
-+|-||.|...+-.|+. ||- ..|..|-..+|+.. -+.||.|+..+...-
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 46999999988877662 898 89999999999874 367999999987643
No 71
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.70 E-value=0.05 Score=59.53 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=35.6
Q ss_pred Ccceeeccccccc-------cEEEcCCCCccccHHhHHHHhhcC-CCCCcccccccc
Q 036765 294 DAKLCVICYDDQR-------NCFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~-------~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~ 342 (350)
.-.+|+||+.... .-..-.|.| -|...|+-.|.+.. ..+||.||..|+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCkn-KFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKN-KFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhh-hhhHHHHHHHHHhcCCCCCCccccccc
Confidence 3478999986421 111235889 89999999998863 568999998875
No 72
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.56 E-value=0.05 Score=51.04 Aligned_cols=45 Identities=29% Similarity=0.733 Sum_probs=34.3
Q ss_pred Ccceeeccccc---cccEEE--cC-CCCccccHHhHHHHhhcCCCCCc--cccc
Q 036765 294 DAKLCVICYDD---QRNCFF--VP-CGHCATCYDCGQRIMKDDSKVCP--ICRT 339 (350)
Q Consensus 294 ~~~~C~IC~d~---~~~~v~--lp-CGH~~~C~~C~~~~~~~~~~~CP--iCR~ 339 (350)
.+..||+|... ..|+.+ -| |-| ..|..|..+++..+...|| -|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyH-rmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYH-RMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHH-HHHHHHHHHHhcCCCCCCCCccHHH
Confidence 34679999764 233333 36 999 8999999999998778999 7854
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=92.31 E-value=0.085 Score=59.96 Aligned_cols=49 Identities=24% Similarity=0.763 Sum_probs=39.6
Q ss_pred Ccceeecccccc---ccEEEcCCCCccccHHhHHHHhhcC---------CCCCccccccccc
Q 036765 294 DAKLCVICYDDQ---RNCFFVPCGHCATCYDCGQRIMKDD---------SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~---~~~v~lpCGH~~~C~~C~~~~~~~~---------~~~CPiCR~~I~~ 343 (350)
.+..|.||+.+. ..++-+.|+| .|...|..++.+++ -..||+|.++|+.
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~H-iFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSH-IFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCcc-chhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 467899999874 3467889999 89999999987762 2569999999874
No 74
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.49 E-value=0.18 Score=50.31 Aligned_cols=47 Identities=28% Similarity=0.692 Sum_probs=31.0
Q ss_pred cceeeccccccccEEEc-----------------CCCCccc-----cHHhHHHHhhc------------CCCCCcccccc
Q 036765 295 AKLCVICYDDQRNCFFV-----------------PCGHCAT-----CYDCGQRIMKD------------DSKVCPICRTL 340 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~l-----------------pCGH~~~-----C~~C~~~~~~~------------~~~~CPiCR~~ 340 (350)
...|.-|+.+..++.+. +|+. ++ |.+|..+|+-. ++..||.||++
T Consensus 271 ~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~-C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~ 349 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQ-CYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAK 349 (358)
T ss_pred cCCccccccCCCCcEEEeccCCcccCCcccccCCCCcc-ccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccc
Confidence 34577777766665433 3444 32 78999988553 34679999998
Q ss_pred cc
Q 036765 341 IH 342 (350)
Q Consensus 341 I~ 342 (350)
+-
T Consensus 350 FC 351 (358)
T PF10272_consen 350 FC 351 (358)
T ss_pred ce
Confidence 65
No 75
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.82 E-value=0.22 Score=39.12 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEcCCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 309 FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 309 v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
+---|.| .|..-|+.+|... +..||+||++..
T Consensus 50 ~wG~CnH-aFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 50 VWGVCNH-AFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred EEEecch-HHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 3446999 9999999999887 688999999764
No 76
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=90.61 E-value=0.24 Score=47.30 Aligned_cols=75 Identities=20% Similarity=0.121 Sum_probs=51.4
Q ss_pred eeEeecCCCCcceeEEEeeechhhhHHHHhhhccCCC---CCCceeEeeccCCceEEEEEcCCCCCccchhhhchhhHHH
Q 036765 140 YYFGVTNKNPRSITMTMNVNVTSKIYDLTKAKNMCSS---SNGSCRLKLLFPNSQYVILTTPSNGDLDGWHVEVSFAARL 216 (350)
Q Consensus 140 ~~~~~~n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~---~~g~~iL~l~f~~~q~vv~t~~~s~~e~~~y~el~~~~r~ 216 (350)
..+.-++..|.||++ ||||+..++.|++.+..-. .+|+. +.+||+|||.|+......+ ..+.+++.++
T Consensus 176 ~aIv~AS~~PlSIii---VGVGd~~F~~M~~LD~d~~l~~~~~~~---~~rDnvqFV~f~~~~~~~~---~~~~~La~~~ 246 (254)
T cd01459 176 KAIVEASKYPLSIVI---VGVGDGPFDAMERLDDDDGLESSDGRI---ATRDIVQFVPFTEFMSNAG---NPEAALATAA 246 (254)
T ss_pred HHHHHHhcCCeEEEE---EEeCCCChHHHHHhcCccccccccCCc---ceecceeeecchhhccccc---ccHHHHHHHH
Confidence 334444678999999 9999999999999876211 12343 4689999999987653321 2344566677
Q ss_pred HHHHHHH
Q 036765 217 IIYIAIL 223 (350)
Q Consensus 217 l~yi~~~ 223 (350)
+++|+.|
T Consensus 247 L~EiP~Q 253 (254)
T cd01459 247 LAEIPSQ 253 (254)
T ss_pred HHhcccc
Confidence 7777754
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.43 E-value=0.13 Score=49.71 Aligned_cols=43 Identities=33% Similarity=0.681 Sum_probs=35.2
Q ss_pred ceeeccccccccEEEcC-CCCccccHHhHHHHhhcCCCCCccccc
Q 036765 296 KLCVICYDDQRNCFFVP-CGHCATCYDCGQRIMKDDSKVCPICRT 339 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lp-CGH~~~C~~C~~~~~~~~~~~CPiCR~ 339 (350)
..|+.|....++++-+| ||| .||.+|+....-...-.||.|.+
T Consensus 275 LkCplc~~Llrnp~kT~cC~~-~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGH-TFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccc-hHHHHHHhhhhhhccccCCCccc
Confidence 78999999999988775 789 99999998654433578999976
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=90.36 E-value=0.37 Score=42.66 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=36.2
Q ss_pred CcceeeccccccccEEEcCCCCc----cccHHhHHHHhhcC-CCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHC----ATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~----~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
.+..|-||++...+. .-||... ....+|+.+|.... ...|++|+++..-
T Consensus 7 ~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 457899999987543 4588542 13689999998763 4679999998754
No 79
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.091 Score=51.01 Aligned_cols=34 Identities=26% Similarity=0.935 Sum_probs=26.3
Q ss_pred EEcCCCCccccHHhHHHHhhcCCCCCccccccccceee
Q 036765 309 FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346 (350)
Q Consensus 309 v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~r 346 (350)
..+||-| +||.+|+..-. .+.||.|-.+|.++..
T Consensus 105 RmIPCkH-vFCl~CAr~~~---dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 105 RMIPCKH-VFCLECARSDS---DKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccccch-hhhhhhhhcCc---cccCcCcccHHHHHHH
Confidence 3679999 99999987642 3679999887766443
No 80
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=89.84 E-value=0.11 Score=50.30 Aligned_cols=46 Identities=30% Similarity=0.695 Sum_probs=33.8
Q ss_pred ceeecccccccc---EEEcCCCCccccHHhHHHHhhc----------------------CCCCCcccccccc
Q 036765 296 KLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKD----------------------DSKVCPICRTLIH 342 (350)
Q Consensus 296 ~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~----------------------~~~~CPiCR~~I~ 342 (350)
..|.||+--+.+ ...++|-| .+...|+.+.... -...||+||.+|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~H-y~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDH-YMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 458888766544 44679999 8999998886542 1346999999875
No 81
>PHA02862 5L protein; Provisional
Probab=89.66 E-value=0.36 Score=42.08 Aligned_cols=52 Identities=23% Similarity=0.504 Sum_probs=37.3
Q ss_pred ceeeccccccccEEEcCCCCc----cccHHhHHHHhhcC-CCCCccccccccceeeccc
Q 036765 296 KLCVICYDDQRNCFFVPCGHC----ATCYDCGQRIMKDD-SKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lpCGH~----~~C~~C~~~~~~~~-~~~CPiCR~~I~~~~ri~~ 349 (350)
..|-||++...+. .-||+.. ....+|+.+|.... ...|++|+.+.. ..+.|.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~-Ik~~yK 59 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN-IKKTYV 59 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE-EEEccc
Confidence 5799999987555 3588631 25689999998763 467999999875 344443
No 82
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=0.71 Score=44.52 Aligned_cols=35 Identities=26% Similarity=0.788 Sum_probs=30.6
Q ss_pred CcceeeccccccccEEEcCC----CCccccHHhHHHHhhc
Q 036765 294 DAKLCVICYDDQRNCFFVPC----GHCATCYDCGQRIMKD 329 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpC----GH~~~C~~C~~~~~~~ 329 (350)
....|.+|.+...|.-|+.| .| -||+-|..+-++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~H-KFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSH-KFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCccc-ceecccCHHHHHh
Confidence 45789999999999999999 68 8999999887665
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=87.84 E-value=0.24 Score=42.65 Aligned_cols=33 Identities=33% Similarity=0.742 Sum_probs=26.6
Q ss_pred cceeecccccccc---EEEcCCC------CccccHHhHHHHhh
Q 036765 295 AKLCVICYDDQRN---CFFVPCG------HCATCYDCGQRIMK 328 (350)
Q Consensus 295 ~~~C~IC~d~~~~---~v~lpCG------H~~~C~~C~~~~~~ 328 (350)
..+|.||++...+ .+.++|| | .||.+|..+|.+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEk-mfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEK-MFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHH-HHHHHHHHHHHh
Confidence 4689999998554 6777898 6 699999999943
No 84
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=0.18 Score=39.35 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=30.4
Q ss_pred eeecccccccc-EE-EcCCCCccccHHhHHHHhhcC--CCCCcccccccc
Q 036765 297 LCVICYDDQRN-CF-FVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIH 342 (350)
Q Consensus 297 ~C~IC~d~~~~-~v-~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~ 342 (350)
.||-|--.-.| +. .--|.| .|-.-|+.++.... +..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h-~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLH-AFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHH-HHHHHHHHHHhcCccccccCCcchheeE
Confidence 34444333333 22 235999 89999999987653 467999999754
No 85
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=87.74 E-value=0.22 Score=40.11 Aligned_cols=31 Identities=32% Similarity=0.810 Sum_probs=23.8
Q ss_pred Ccceeecccccccc--EEEcCCCCccccHHhHHH
Q 036765 294 DAKLCVICYDDQRN--CFFVPCGHCATCYDCGQR 325 (350)
Q Consensus 294 ~~~~C~IC~d~~~~--~v~lpCGH~~~C~~C~~~ 325 (350)
++..|.+|-....+ .++.|||| .++..|..+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~-v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGH-VVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCe-EEecccccC
Confidence 45679999887655 44569999 999999753
No 86
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.45 E-value=0.41 Score=34.00 Aligned_cols=46 Identities=26% Similarity=0.660 Sum_probs=26.2
Q ss_pred eeeccccccccEEEcCCC-CccccHHhHHHHhhcCCCCCccccccccceee
Q 036765 297 LCVICYDDQRNCFFVPCG-HCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346 (350)
Q Consensus 297 ~C~IC~d~~~~~v~lpCG-H~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~r 346 (350)
-|.-|.-+.+..+ .|. | ..|..|+..+... +..||+|..++.+.+|
T Consensus 4 nCKsCWf~~k~Li--~C~dH-YLCl~CLt~ml~~-s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDH-YLCLNCLTLMLSR-SDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSEE--E-SS--EEEHHHHHHT-SS-SSEETTTTEE----S-
T ss_pred cChhhhhcCCCee--eecch-hHHHHHHHHHhcc-ccCCCcccCcCccccC
Confidence 4777877666654 465 7 8999999999776 6789999998876543
No 87
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=86.58 E-value=0.46 Score=46.38 Aligned_cols=48 Identities=25% Similarity=0.588 Sum_probs=34.3
Q ss_pred Ccceeecccccc-------------------ccEEEcCCCCccccHHhHHHHhhcC---------CCCCccccccccc
Q 036765 294 DAKLCVICYDDQ-------------------RNCFFVPCGHCATCYDCGQRIMKDD---------SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~-------------------~~~v~lpCGH~~~C~~C~~~~~~~~---------~~~CPiCR~~I~~ 343 (350)
.+.+||+|+..- .+-.|-|||| .|.+=-..+|.+- ...||.|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGH--v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGH--VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccc--ccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 467899998752 2234789999 4777777777651 2569999888764
No 88
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=86.46 E-value=0.13 Score=55.51 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=78.8
Q ss_pred ccchhhccccccceeeeecccccceeEeecCC-CCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEE
Q 036765 116 SLAFSFQMNKKSKIGQYDVEEDDMYYFGVTNK-NPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVI 194 (350)
Q Consensus 116 ~~~~~~~li~~l~i~~y~~~~~~~~~~~~~n~-~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv 194 (350)
+++..|+|+.|+==-=|+..++|...|-.-+. ...+++ ..+...|..-+++|.|+ -+--.+|++..++
T Consensus 331 NL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v----~~Lh~vL~pFlLRR~K~-------dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 331 NLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELV----SRLHKVLRPFLLRRIKS-------DVEKSLPPKKELI 399 (971)
T ss_pred cHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHH----HHHHhhhhHHHHHHHHH-------hHhhcCCCcceee
Confidence 46789999999877778888888888877532 223333 35666777777777773 1222478999999
Q ss_pred EEcCCCCCccchhhhchhhHHHHHHHHH---HH--HHHHHHHHHHHHhCCCCCCCC
Q 036765 195 LTTPSNGDLDGWHVEVSFAARLIIYIAI---LG--FITLIIFLVSKYLGACDGNSD 245 (350)
Q Consensus 195 ~t~~~s~~e~~~y~el~~~~r~l~yi~~---~G--~~~~il~LlLrl~~~c~h~~~ 245 (350)
..++|+.-..+||+.+-- .-|.. .+ .=.-++-++..||.+|.||-+
T Consensus 400 iyvgms~mQkk~Y~~iL~-----kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYL 450 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAILM-----KDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYL 450 (971)
T ss_pred EeccchHHHHHHHHHHHH-----hcchhhcccccchhhHHHHHHHHHHHhcCCccc
Confidence 999999999999996321 12221 11 113356677889999999955
No 89
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=0.4 Score=46.09 Aligned_cols=33 Identities=27% Similarity=0.878 Sum_probs=27.9
Q ss_pred EEEcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 308 CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 308 ~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
+..+.||| .+|..|+..+.......||.||.+.
T Consensus 22 p~~l~c~h-~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 22 PRVLKCGH-TICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CcccccCc-eehHhHHHHHhcCceeeccCCCCcc
Confidence 44556999 9999999999877667899999984
No 90
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=85.85 E-value=0.14 Score=57.66 Aligned_cols=117 Identities=8% Similarity=0.002 Sum_probs=79.6
Q ss_pred cchhhccccccceeeeecccccceeEeecCCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEEE
Q 036765 117 LAFSFQMNKKSKIGQYDVEEDDMYYFGVTNKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVILT 196 (350)
Q Consensus 117 ~~~~~~li~~l~i~~y~~~~~~~~~~~~~n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~t 196 (350)
....|+|++||.-..+...+.|+..|.........-.+ -.+...+...|.+|.|.. +...||++...++.
T Consensus 334 l~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i---~~L~~~L~pf~LRR~Ksd-------V~~~LPpK~e~iv~ 403 (1033)
T PLN03142 334 LHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVV---QQLHKVLRPFLLRRLKSD-------VEKGLPPKKETILK 403 (1033)
T ss_pred HHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHH---HHHHHHhhHHHhhhhHHH-------HhhhCCCceeEEEe
Confidence 45789999999988888888888888765333222222 245667778888888842 11257888889999
Q ss_pred cCCCCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 036765 197 TPSNGDLDGWHVEVSFAARLIIYIAILGFITLIIFLVSKYLGACDGNSD 245 (350)
Q Consensus 197 ~~~s~~e~~~y~el~~~~r~l~yi~~~G~~~~il~LlLrl~~~c~h~~~ 245 (350)
.+|+..+..+|..+...... .+...+.-..++-++.+|+++|+||.+
T Consensus 404 v~LS~~Qk~lY~~ll~k~~~--~l~~g~~~~~LlnilmqLRk~cnHP~L 450 (1033)
T PLN03142 404 VGMSQMQKQYYKALLQKDLD--VVNAGGERKRLLNIAMQLRKCCNHPYL 450 (1033)
T ss_pred eCCCHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHHHhCCHHh
Confidence 99999888899866532211 111112234456777889999999854
No 91
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.37 E-value=0.58 Score=46.93 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=37.2
Q ss_pred cCcceeecccccccc---EEEcCCCCccccHHhHHHHhhcCC--CCCccccccc
Q 036765 293 YDAKLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKDDS--KVCPICRTLI 341 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~~~--~~CPiCR~~I 341 (350)
..-+.|||=.+...+ |.-+.||| +.|.+-+.++.+.+. -+||-|-...
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGH-VISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGH-VISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccc-eecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 345799997665333 67789999 999999999988754 4799997544
No 92
>PHA03096 p28-like protein; Provisional
Probab=84.90 E-value=0.49 Score=45.87 Aligned_cols=43 Identities=21% Similarity=0.357 Sum_probs=30.3
Q ss_pred ceeeccccccc--------cEEEcCCCCccccHHhHHHHhhcC--CCCCccccc
Q 036765 296 KLCVICYDDQR--------NCFFVPCGHCATCYDCGQRIMKDD--SKVCPICRT 339 (350)
Q Consensus 296 ~~C~IC~d~~~--------~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~ 339 (350)
..|-||++... ...+-.|-| .||..|...|.... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h-~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKH-EFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCc-HHHHHHHHHHHHhhhhcccCccccc
Confidence 67999998733 244568999 99999999886542 233555543
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=0.37 Score=50.98 Aligned_cols=40 Identities=30% Similarity=0.659 Sum_probs=30.8
Q ss_pred Ccceeeccccc----cccEEEcCCCCccccHHhHHHHhhcCCCCCcccc
Q 036765 294 DAKLCVICYDD----QRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICR 338 (350)
Q Consensus 294 ~~~~C~IC~d~----~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR 338 (350)
+-..|.||+.. ...++++.||| ..|..|++.+- ...|| |.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cgh-tic~~c~~~ly---n~scp-~~ 53 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGH-TICGHCVQLLY---NASCP-TK 53 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccc-hHHHHHHHhHh---hccCC-CC
Confidence 34679999654 34588899999 99999999983 36788 53
No 94
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=82.93 E-value=0.94 Score=44.26 Aligned_cols=51 Identities=6% Similarity=-0.107 Sum_probs=41.1
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeec
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRL 347 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri 347 (350)
...+|.+|-...-..+..||||..+|.+|+..- ....||.|..-.....+|
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s---~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLASAS---ASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhhcc---cCCccccccccceeeeec
Confidence 457899998888888899999999999998832 147899998766665554
No 95
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=80.12 E-value=0.55 Score=47.20 Aligned_cols=47 Identities=26% Similarity=0.696 Sum_probs=0.0
Q ss_pred cceeeccccc-------------------cccEEEcCCCCccccHHhHHHHhhc-----C----CCCCccccccccc
Q 036765 295 AKLCVICYDD-------------------QRNCFFVPCGHCATCYDCGQRIMKD-----D----SKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~-------------------~~~~v~lpCGH~~~C~~C~~~~~~~-----~----~~~CPiCR~~I~~ 343 (350)
..+||+|+.. +..-+|-|||| .|.+=-.+.|.+ . ...||.|-.+++.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGH--v~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGH--VCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccc--ccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 6789999864 12345789999 355544455543 1 2579999999875
No 96
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.32 E-value=0.5 Score=50.61 Aligned_cols=49 Identities=22% Similarity=0.559 Sum_probs=40.8
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcC--CCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~ 343 (350)
...+|+||......+..+.|-| .||..|........ ...||+|+..+++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~-~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDH-IFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhH-HHHhhhhhceeeccCccccchhhhhhhhh
Confidence 4578999999999988899999 99999998876552 3579999977765
No 97
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.77 E-value=0.27 Score=37.73 Aligned_cols=42 Identities=24% Similarity=0.574 Sum_probs=23.9
Q ss_pred ceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 296 KLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
..||.|....... . || ..|..|..++... ..||-|.++++..
T Consensus 2 ~~CP~C~~~L~~~---~-~~-~~C~~C~~~~~~~--a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQ---G-GH-YHCEACQKDYKKE--AFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEE---T-TE-EEETTT--EEEEE--EE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEe---C-CE-EECccccccceec--ccCCCcccHHHHH
Confidence 4699998663322 1 77 7899998887444 7899999888754
No 98
>PLN02189 cellulose synthase
Probab=77.68 E-value=1.4 Score=49.42 Aligned_cols=50 Identities=30% Similarity=0.804 Sum_probs=35.4
Q ss_pred Ccceeeccccccc----cEEEcCCCCc--cccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQR----NCFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~----~~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....|.||-|... .-.|+.|+-+ ..|+.|.+--.+.++..||.|++..+.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4568999998733 2235565541 589999976666667889999988763
No 99
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=77.56 E-value=0.84 Score=45.84 Aligned_cols=48 Identities=27% Similarity=0.674 Sum_probs=36.5
Q ss_pred Ccceeeccccc----cccEEEcCCCCccccHHhHHHHhhcC-CCCCcccccccc
Q 036765 294 DAKLCVICYDD----QRNCFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~----~~~~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~ 342 (350)
.+.-|-.|=+. +.+.--+||.| .|...|+..+..++ ...||.||.-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH-IfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH-IFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH-HHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 45679999654 34466789999 99999999988764 467999994433
No 100
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=1.6 Score=43.83 Aligned_cols=29 Identities=34% Similarity=0.807 Sum_probs=23.8
Q ss_pred CCCCccccHHhHHHHhhcC-C-CCCccccccc
Q 036765 312 PCGHCATCYDCGQRIMKDD-S-KVCPICRTLI 341 (350)
Q Consensus 312 pCGH~~~C~~C~~~~~~~~-~-~~CPiCR~~I 341 (350)
.||| .|...|+..|.+.. . ..||+||-.+
T Consensus 25 ~cGh-ifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 25 TCGH-IFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred chhh-HHHHHHHHHHHccCCccCCCCceeecc
Confidence 4999 99999999998864 2 5799999443
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=77.05 E-value=0.72 Score=52.38 Aligned_cols=45 Identities=36% Similarity=0.811 Sum_probs=37.1
Q ss_pred Ccceeecccccccc-EEEcCCCCccccHHhHHHHhhcCCCCCcccccc
Q 036765 294 DAKLCVICYDDQRN-CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 294 ~~~~C~IC~d~~~~-~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
+...|.||.|..++ .....||| .+|..|...+... ...||+|...
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh-~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGH-EPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeech-hHhhhHHHHHHHH-hccCcchhhh
Confidence 45689999999874 45558999 9999999998776 6889999743
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=76.56 E-value=1.8 Score=47.16 Aligned_cols=55 Identities=24% Similarity=0.554 Sum_probs=40.4
Q ss_pred Ccceeeccccc--cccEEEcCCCCc----cccHHhHHHHhhcC-CCCCccccccccceeeccc
Q 036765 294 DAKLCVICYDD--QRNCFFVPCGHC----ATCYDCGQRIMKDD-SKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 294 ~~~~C~IC~d~--~~~~v~lpCGH~----~~C~~C~~~~~~~~-~~~CPiCR~~I~~~~ri~~ 349 (350)
++..|.||+.+ +.++.+.||... ....+|+.+|.... ..+|-+|..+++- .+||.
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F-k~IY~ 72 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF-KDIYK 72 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee-eeecc
Confidence 44779999865 556999999752 25789999998763 4679999887753 45554
No 103
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=76.47 E-value=0.86 Score=43.96 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=35.3
Q ss_pred ceeeccccc----cccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 296 KLCVICYDD----QRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 296 ~~C~IC~d~----~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..||||.+. ..++..++||| ..-..|........ -.||+|-. +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH-~~h~~cf~e~~~~~-y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGH-YMHSRCFEEMICEG-YTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCccc-chHHHHHHHHhccC-CCCCcccc-hHH
Confidence 449999876 45567889999 67789999987764 88999987 443
No 104
>PLN02436 cellulose synthase A
Probab=75.74 E-value=1.5 Score=49.39 Aligned_cols=50 Identities=28% Similarity=0.719 Sum_probs=35.6
Q ss_pred Ccceeecccccccc----EEEcCCCCc--cccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+.|.||=|.... =.|+-|..+ ..|+.|.+--.+.....||.|++..+.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 45689999887422 135566651 489999976666667889999988763
No 105
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=75.22 E-value=2.5 Score=47.73 Aligned_cols=49 Identities=33% Similarity=0.741 Sum_probs=33.9
Q ss_pred Ccceeecccccccc----EEEcCCCCc--cccHHhHHHHhhcCCCCCcccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
+.+.|.||=|...- -.|+-|..+ ..|+.|.+-=.+.+++.||.|++...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 45689999887332 134566551 48999995544445678999998776
No 106
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=73.67 E-value=0.93 Score=44.29 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=41.1
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceee
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRR 346 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~r 346 (350)
..-.|.+|+++.......+|||-+||.+|.......+...|++|...+.....
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 34569999999888888999999999999877644435669999766554433
No 107
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.21 E-value=1.7 Score=47.59 Aligned_cols=44 Identities=23% Similarity=0.506 Sum_probs=33.7
Q ss_pred ceeecccccccc-EEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 296 KLCVICYDDQRN-CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 296 ~~C~IC~d~~~~-~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
..|..|-....- .+..-||| .+...|+.+ +...||-|+....++
T Consensus 841 skCs~C~~~LdlP~VhF~CgH-syHqhC~e~----~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGH-SYHQHCLED----KEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCccccceeeeeccc-HHHHHhhcc----CcccCCccchhhhhh
Confidence 589999766554 46679999 999999983 257899999855443
No 108
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=69.45 E-value=2.9 Score=34.56 Aligned_cols=28 Identities=32% Similarity=0.638 Sum_probs=24.4
Q ss_pred cCCCCccccHHhHHHHhhcCCCCCcccccc
Q 036765 311 VPCGHCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 311 lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
--|.| .|..-|+.+|.+. ...||+|.+.
T Consensus 79 G~CNH-aFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNH-AFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred eecch-HHHHHHHHHHHhh-cCcCCCcCcc
Confidence 46999 9999999999887 5789999765
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.95 E-value=2.3 Score=42.99 Aligned_cols=34 Identities=29% Similarity=0.785 Sum_probs=24.6
Q ss_pred cceeecccccccc---EE-EcCCCCccccHHhHHHHhhc
Q 036765 295 AKLCVICYDDQRN---CF-FVPCGHCATCYDCGQRIMKD 329 (350)
Q Consensus 295 ~~~C~IC~d~~~~---~v-~lpCGH~~~C~~C~~~~~~~ 329 (350)
..+|.||+..... +. ...|+| .||.+|..+..+.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H-~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGH-RFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccc-hhhhHHhHHHhhh
Confidence 4679999943222 22 357999 8999999987664
No 110
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=66.94 E-value=4.5 Score=31.71 Aligned_cols=49 Identities=33% Similarity=0.752 Sum_probs=20.7
Q ss_pred Ccceeecccccccc----EEEcC---CCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVP---CGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lp---CGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...|.||=|...- -+|+- |+- ..|+.|..-=.+...+.||.|+.+.+.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~f-PvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAF-PVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCC-ccchhHHHHHhhcCcccccccCCCccc
Confidence 45789999876432 12444 555 679999876666667889999987654
No 111
>PLN02400 cellulose synthase
Probab=65.76 E-value=2.8 Score=47.26 Aligned_cols=50 Identities=34% Similarity=0.814 Sum_probs=33.6
Q ss_pred Ccceeecccccccc----EEEcCCCCc--cccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+.|.||=|...- =.|+-|..+ ..|+.|.+-=.+.+.+.||.|++..+.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 45689999887432 134455551 489999854334446789999988763
No 112
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=64.71 E-value=0.83 Score=51.75 Aligned_cols=116 Identities=6% Similarity=0.009 Sum_probs=75.9
Q ss_pred ccchhhccccccceeeeecccccceeEeec---------CCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeec
Q 036765 116 SLAFSFQMNKKSKIGQYDVEEDDMYYFGVT---------NKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLL 186 (350)
Q Consensus 116 ~~~~~~~li~~l~i~~y~~~~~~~~~~~~~---------n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~ 186 (350)
++...|||.+||==..|..+..|+-+|+.+ +.| ..++ +++.-++..-.+||.|- |=. -.
T Consensus 779 slmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn-~klV----~RLHkVlrPfiLRRlK~---dVE----KQ 846 (1958)
T KOG0391|consen 779 SLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYN-HKLV----IRLHKVLRPFILRRLKR---DVE----KQ 846 (1958)
T ss_pred HHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhc-hHHH----HHHHHHhHHHHHHHHHH---HHH----Hh
Confidence 356899999999988899999999999976 122 2222 34555566656665551 100 13
Q ss_pred cCCceEEEEEcCCCCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 036765 187 FPNSQYVILTTPSNGDLDGWHVEVSFAARLIIYIAILGFITLIIFLVSKYLGACDGNS 244 (350)
Q Consensus 187 f~~~q~vv~t~~~s~~e~~~y~el~~~~r~l~yi~~~G~~~~il~LlLrl~~~c~h~~ 244 (350)
+|.+...++.+-.|...+-.|.+.-....- .+-...|.+.+++-++++||..|+||-
T Consensus 847 lpkKyEHvv~CrLSkRQR~LYDDfmsq~~T-KetLkSGhfmsVlnilmqLrKvCNHPn 903 (1958)
T KOG0391|consen 847 LPKKYEHVVKCRLSKRQRALYDDFMSQPGT-KETLKSGHFMSVLNILMQLRKVCNHPN 903 (1958)
T ss_pred cchhhhhheeeehhhhHHHHHHHHhhccch-hhHhhcCchhHHHHHHHHHHHHcCCCC
Confidence 566666666776666666666643322111 133457778889999999999999983
No 113
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.14 E-value=4.8 Score=28.26 Aligned_cols=40 Identities=25% Similarity=0.725 Sum_probs=24.6
Q ss_pred eecccccccc--EEEcCCCCc----cccHHhHHHHhhc-CCCCCccc
Q 036765 298 CVICYDDQRN--CFFVPCGHC----ATCYDCGQRIMKD-DSKVCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~--~v~lpCGH~----~~C~~C~~~~~~~-~~~~CPiC 337 (350)
|-||++...+ ....||+-. ....+|+.+|... +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788876433 567799631 2578999999775 34679987
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=62.84 E-value=4.2 Score=40.05 Aligned_cols=47 Identities=34% Similarity=0.823 Sum_probs=35.2
Q ss_pred cceeecccccc--ccEEE--cCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYDDQ--RNCFF--VPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~--~~~v~--lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...|+||.+.. .+.-+ .|||| ..|..|...+... ...||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~-~~~l~~~~t~~~~-~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGF-RLCLFCHKTISDG-DGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccc-cchhhhhhccccc-CCCCCccCCcccc
Confidence 36799998853 22223 46899 6999999998766 6899999977654
No 115
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=62.51 E-value=5.2 Score=45.10 Aligned_cols=50 Identities=32% Similarity=0.701 Sum_probs=34.2
Q ss_pred Ccceeecccccccc----EEEcCCCCc--cccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....|.||=|.... =.|+-|..+ ..|+.|.+-=.+...+.||.|.++...
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 45789999887432 134566551 489999955444456789999988763
No 116
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=60.62 E-value=5.3 Score=43.64 Aligned_cols=49 Identities=10% Similarity=0.306 Sum_probs=31.1
Q ss_pred Ccceeecccccccc-------EEEcCCCCccccHHhHHHHhhc-----CCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN-------CFFVPCGHCATCYDCGQRIMKD-----DSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~-------~v~lpCGH~~~C~~C~~~~~~~-----~~~~CPiCR~~I~~ 343 (350)
+...|.+|.....+ +..-.|+| .+|..|+..+.+. ....|+.|..-|..
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~-~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVE-NQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhh-hhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 34455555544433 22234999 9999999998765 13458888765554
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.42 E-value=8.7 Score=36.68 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=35.5
Q ss_pred cCcceeecccccc----ccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQ----RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~----~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.....|||---.+ +-.++.+||| +|=..-+.++ ....|++|.+.++.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGc-V~SerAlKei---kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGC-VFSERALKEI---KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccce-eccHHHHHHh---hhccccccCCcccc
Confidence 3568999975544 3366789999 8977777777 24789999998765
No 118
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.91 E-value=5.5 Score=43.98 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=24.6
Q ss_pred cCcceeecccccccc--EEEcCCCCccccHHhHHHHhh
Q 036765 293 YDAKLCVICYDDQRN--CFFVPCGHCATCYDCGQRIMK 328 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~--~v~lpCGH~~~C~~C~~~~~~ 328 (350)
+.+..|-+|.-..-. -...|||| .|.++|+.+...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH-~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGH-CFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccc-hHHHHHHHHHHH
Confidence 456789999765322 23449999 999999877543
No 119
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.41 E-value=5.9 Score=38.53 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=21.5
Q ss_pred CCCccccHHhHHHHhhc------------CCCCCcccccccc
Q 036765 313 CGHCATCYDCGQRIMKD------------DSKVCPICRTLIH 342 (350)
Q Consensus 313 CGH~~~C~~C~~~~~~~------------~~~~CPiCR~~I~ 342 (350)
|.- .-|.+|+.+|.-. ++..||.||+.+-
T Consensus 325 crp-~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRP-LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred ccc-HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 444 4689999987542 3578999998864
No 120
>PF12124 Nsp3_PL2pro: Coronavirus polyprotein cleavage domain; InterPro: IPR022733 This domain is found in SARS coronaviruses, and is about 70 amino acids in length. It is found associated with various other coronavirus proteins due to the polyprotein nature of most viral translation. PL2pro is a domain of the non-structural protein nsp3. The domain performs three of the cleavages required to separate the translated polyprotein into its distinct proteins. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2KAF_A 2KQW_A.
Probab=57.37 E-value=5.5 Score=29.04 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=13.9
Q ss_pred CCCccceeE----------EeecCCeeE
Q 036765 48 SYSRKGISL----------WLNKGSGIR 65 (350)
Q Consensus 48 ~~~~k~~~~----------~ln~gs~~~ 65 (350)
++|+|.|+| ||.+|.+|-
T Consensus 12 agsy~dwsysgqrtelgveflkrgdkiv 39 (66)
T PF12124_consen 12 AGSYRDWSYSGQRTELGVEFLKRGDKIV 39 (66)
T ss_dssp HTEETTEE----EETTEEEEEEETTEEE
T ss_pred cccccccccccceehhhhHHHhcCCEEE
Confidence 588999998 888888763
No 121
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.18 E-value=6.6 Score=37.54 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=36.4
Q ss_pred cCcceeeccccccccE----EEcCCCCc----cccHHhHHHHhhcC-------CCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNC----FFVPCGHC----ATCYDCGQRIMKDD-------SKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~----v~lpCGH~----~~C~~C~~~~~~~~-------~~~CPiCR~~I~~ 343 (350)
+.+..|-||+...+|- -.-||..+ .....|+.+|.+.+ ...||.|+.....
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 3567899999876662 34588532 46789999998762 2459999976543
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=54.80 E-value=8.1 Score=27.48 Aligned_cols=44 Identities=23% Similarity=0.481 Sum_probs=19.4
Q ss_pred ceeeccccccccEE-EcCCCCccccHHhHHHH--hh-cCCCCCcccccc
Q 036765 296 KLCVICYDDQRNCF-FVPCGHCATCYDCGQRI--MK-DDSKVCPICRTL 340 (350)
Q Consensus 296 ~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~--~~-~~~~~CPiCR~~ 340 (350)
..||+.......++ -..|.| .-|.+=..-+ .. .+.=.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H-~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKH-LQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--S-S--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcc-cceECHHHHHHHhhccCCeECcCCcCc
Confidence 46999998888865 568999 5665432222 11 123469999864
No 123
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=6.5 Score=40.35 Aligned_cols=48 Identities=25% Similarity=0.566 Sum_probs=35.7
Q ss_pred Ccceeecccccccc-EEEcCCCCccccHHhHHHHhhcC-----C--CCCc--ccccccc
Q 036765 294 DAKLCVICYDDQRN-CFFVPCGHCATCYDCGQRIMKDD-----S--KVCP--ICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~-~v~lpCGH~~~C~~C~~~~~~~~-----~--~~CP--iCR~~I~ 342 (350)
....|-||.+.... ++.+.||| .||..|........ . .+|| -|++.+.
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H-~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~ 126 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGH-PFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVG 126 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCc-HHHHHHHHHHhhheeeccccccccCCCCCccccCC
Confidence 34679999999875 78889999 99999998876541 1 2455 4666655
No 124
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.95 E-value=12 Score=35.28 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=36.3
Q ss_pred ceeeccccc--cccEEEcCCCCccccHHhHHHHhhc-------CCCCCccccccccceee
Q 036765 296 KLCVICYDD--QRNCFFVPCGHCATCYDCGQRIMKD-------DSKVCPICRTLIHKVRR 346 (350)
Q Consensus 296 ~~C~IC~d~--~~~~v~lpCGH~~~C~~C~~~~~~~-------~~~~CPiCR~~I~~~~r 346 (350)
..|..|-.. ..+++-+-|-| .|...|+....-. ..-.||.|.++|-.-+.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyh-lfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N 109 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYH-LFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN 109 (299)
T ss_pred CCCceeCCccccCcceeehhhh-hHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence 347777653 55677779999 9999999887543 13569999998755433
No 125
>PRK09919 anti-adapter protein IraM; Provisional
Probab=51.78 E-value=37 Score=28.61 Aligned_cols=83 Identities=18% Similarity=0.194 Sum_probs=57.1
Q ss_pred eccchhhccccccceeeeecccccceeEeec------------CCCCcceeEEEee-echhhhHHHHhhhccCCCCCCce
Q 036765 115 VSLAFSFQMNKKSKIGQYDVEEDDMYYFGVT------------NKNPRSITMTMNV-NVTSKIYDLTKAKNMCSSSNGSC 181 (350)
Q Consensus 115 ~~~~~~~~li~~l~i~~y~~~~~~~~~~~~~------------n~~~~si~m~l~v-~v~~~l~~~mk~~~k~s~~~g~~ 181 (350)
+++.-+||+|.++|-..+-+|=...+++.-| |..++.|.+ .+| --...+|..++.+..|. -|+.+
T Consensus 12 P~tG~~FS~i~~~~nlKlilWY~~d~~L~pG~~i~~~~~gvliNdk~~pItI-Ynvtpyn~~lW~~lk~~~~CP-gN~~~ 89 (114)
T PRK09919 12 PSTGISFSAISSLRNLKLILWYQADIFLPPGSIITPVKSGVLLNDKPYPITI-YNITPFNKALWSLLKSSQECP-GNENK 89 (114)
T ss_pred CCCCcchhhhhhhhcceEEEEEeeeEEeCCCCEEEEcCCeEEECCcEeEEEE-EEecccCHHHHHHhhcccCCC-CCCCc
Confidence 3344689999999999999999999998755 455555555 233 23567999999999986 55555
Q ss_pred eEeeccCCceEEEEEcCC
Q 036765 182 RLKLLFPNSQYVILTTPS 199 (350)
Q Consensus 182 iL~l~f~~~q~vv~t~~~ 199 (350)
+.+.=+-+..+..-..|.
T Consensus 90 ~~~~C~~~~~C~~~~CPy 107 (114)
T PRK09919 90 ITNKCLYNFSCIIKICPY 107 (114)
T ss_pred ccccccCcccceEEECCC
Confidence 554334444555545553
No 126
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.67 E-value=14 Score=35.29 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=28.9
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHh
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIM 327 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~ 327 (350)
+-..|..|+...++++..|=|| .||++|+-+.+
T Consensus 42 ~FdcCsLtLqPc~dPvit~~Gy-lfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGY-LFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCCccCCCCe-eeeHHHHHHHH
Confidence 4467999999999999999999 99999987653
No 127
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=46.83 E-value=3.8 Score=24.51 Aligned_cols=23 Identities=43% Similarity=0.990 Sum_probs=13.7
Q ss_pred ccHHhHHHHhhcCCCCCccccccc
Q 036765 318 TCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 318 ~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
+|..|...+.+. ..-||.|..++
T Consensus 1 ~Cp~CG~~~~~~-~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDD-AKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCc-CcchhhhCCcC
Confidence 356666666433 45688886653
No 128
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=45.75 E-value=5.1 Score=45.74 Aligned_cols=111 Identities=7% Similarity=0.023 Sum_probs=74.9
Q ss_pred chhhccccccceeeeecccccceeEeecCCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEEEc
Q 036765 118 AFSFQMNKKSKIGQYDVEEDDMYYFGVTNKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVILTT 197 (350)
Q Consensus 118 ~~~~~li~~l~i~~y~~~~~~~~~~~~~n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~t~ 197 (350)
-..|+|++|+-=..|..|+.|...+...+ ...+. .++..|...|+||-| ..-. =.+|.++.-++.+
T Consensus 541 kEL~sLl~Fl~P~kf~~~~~f~~~~~~~~--e~~~~-----~L~~~L~P~~lRr~k----kdve---kslp~k~E~IlrV 606 (1373)
T KOG0384|consen 541 KELWSLLHFLMPGKFDSWDEFLEEFDEET--EEQVR-----KLQQILKPFLLRRLK----KDVE---KSLPPKEETILRV 606 (1373)
T ss_pred HHHHHHhcccCCCCCCcHHHHHHhhcchh--HHHHH-----HHHHHhhHHHHHHHH----hhhc---cCCCCCcceEEEe
Confidence 35699999999999999999999884432 22222 466678888988776 2211 1578888888999
Q ss_pred CCCCCccchhhhchhhHHHHHHHHHHHH---HHHHHHHHHHHhCCCCCCCC
Q 036765 198 PSNGDLDGWHVEVSFAARLIIYIAILGF---ITLIIFLVSKYLGACDGNSD 245 (350)
Q Consensus 198 ~~s~~e~~~y~el~~~~r~l~yi~~~G~---~~~il~LlLrl~~~c~h~~~ 245 (350)
.|+.-.-.||+..-.+ .+-...-|. ..++|-+..-|+.+|+||-+
T Consensus 607 els~lQk~yYk~ILtk---N~~~LtKG~~g~~~~lLNimmELkKccNHpyL 654 (1373)
T KOG0384|consen 607 ELSDLQKQYYKAILTK---NFSALTKGAKGSTPSLLNIMMELKKCCNHPYL 654 (1373)
T ss_pred ehhHHHHHHHHHHHHh---hHHHHhccCCCCCchHHHHHHHHHHhcCCccc
Confidence 8888778888743221 111122222 34556666677789999865
No 129
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.41 E-value=12 Score=33.20 Aligned_cols=23 Identities=35% Similarity=0.875 Sum_probs=19.9
Q ss_pred cccHHhHHHHhhcCCCCCccccccccc
Q 036765 317 ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 317 ~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.||..|...... .||.|..+|..
T Consensus 29 ~fC~kCG~~tI~----~Cp~C~~~IrG 51 (158)
T PF10083_consen 29 KFCSKCGAKTIT----SCPNCSTPIRG 51 (158)
T ss_pred HHHHHhhHHHHH----HCcCCCCCCCC
Confidence 799999999854 49999999875
No 130
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.24 E-value=10 Score=32.94 Aligned_cols=28 Identities=39% Similarity=0.829 Sum_probs=17.1
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHH
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRI 326 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~ 326 (350)
++..|-||... -+.-.||| -|..|-.+.
T Consensus 64 ddatC~IC~KT---KFADG~GH--~C~YCq~r~ 91 (169)
T KOG3799|consen 64 DDATCGICHKT---KFADGCGH--NCSYCQTRF 91 (169)
T ss_pred cCcchhhhhhc---ccccccCc--ccchhhhhH
Confidence 45679999743 12236898 355555444
No 131
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.69 E-value=11 Score=32.42 Aligned_cols=23 Identities=39% Similarity=0.961 Sum_probs=18.7
Q ss_pred cccHHhHHHHhhcCCCCCccccccccc
Q 036765 317 ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 317 ~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.||..|...-. ..||+|..+|..
T Consensus 29 afcskcgeati----~qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATI----TQCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHH----hcCCccCCcccc
Confidence 68999988764 459999999875
No 132
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=43.51 E-value=23 Score=24.38 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=18.8
Q ss_pred eeccccccccEEEc---CCCCccccHHhHHHHhhcCCC-CCccc
Q 036765 298 CVICYDDQRNCFFV---PCGHCATCYDCGQRIMKDDSK-VCPIC 337 (350)
Q Consensus 298 C~IC~d~~~~~v~l---pCGH~~~C~~C~~~~~~~~~~-~CPiC 337 (350)
|.+|.+.....+.= .|+= .+...|+..+++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~-r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNV-RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S---EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCc-hHHHHHHHHHHhcCCCCCCcCC
Confidence 44555443333222 2665 5678999999887433 69988
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=42.94 E-value=7.5 Score=37.51 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=24.0
Q ss_pred cceeeccccccccEEEcCC-----CCccccHHhHHHHhhcCCCCCccccccccceeec
Q 036765 295 AKLCVICYDDQRNCFFVPC-----GHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRL 347 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpC-----GH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri 347 (350)
...||||=..+.-.++..= .| .+|.-|...|.-. ...||.|-..-......
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~-L~Cs~C~t~W~~~-R~~Cp~Cg~~~~~~l~~ 227 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRY-LHCSLCGTEWRFV-RIKCPYCGNTDHEKLEY 227 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEE-EEETTT--EEE---TTS-TTT---SS-EEE-
T ss_pred CCcCCCCCCcCceEEEecCCCCccEE-EEcCCCCCeeeec-CCCCcCCCCCCCcceee
Confidence 4689999887666554433 35 6899999998444 57899997665444433
No 134
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=42.29 E-value=3.7 Score=38.37 Aligned_cols=117 Identities=6% Similarity=0.016 Sum_probs=70.0
Q ss_pred chhhccccccceeeeecccccceeEeecCCCCcceeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEEEc
Q 036765 118 AFSFQMNKKSKIGQYDVEEDDMYYFGVTNKNPRSITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVILTT 197 (350)
Q Consensus 118 ~~~~~li~~l~i~~y~~~~~~~~~~~~~n~~~~si~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~t~ 197 (350)
...|++++||+..++.....|+..+.........-.+ -.++..+...|.++.+... ...+|+....+...
T Consensus 178 ~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~---~~L~~~l~~~~~r~~~~d~-------~~~lp~~~~~~~~~ 247 (299)
T PF00176_consen 178 EDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI---ERLRELLSEFMIRRTKKDV-------EKELPPKIEHVINV 247 (299)
T ss_dssp HHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH---HHHHHHHCCCEECHCGGGG-------CTTSTCEEEEEEEE
T ss_pred cccccchheeeccccccchhhhhhhhhhccccccccc---cccccccchhhhhhhcccc-------cccCCceEEEEEEe
Confidence 4689999999998888777777666443111100011 1223333334434444211 12477888888888
Q ss_pred CCCCCccchhhhchhhHHHHH--HH-HHHHHHHHHHHHHHHHhCCCCCCC
Q 036765 198 PSNGDLDGWHVEVSFAARLII--YI-AILGFITLIIFLVSKYLGACDGNS 244 (350)
Q Consensus 198 ~~s~~e~~~y~el~~~~r~l~--yi-~~~G~~~~il~LlLrl~~~c~h~~ 244 (350)
+|++.+.+.|.++....+... .. ...+.++.++..+.+|++.|+||.
T Consensus 248 ~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~hp~ 297 (299)
T PF00176_consen 248 ELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCNHPY 297 (299)
T ss_dssp GG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH-TH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhCCcc
Confidence 999999999997664443322 11 123446778889999999999984
No 135
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=41.48 E-value=15 Score=36.55 Aligned_cols=25 Identities=32% Similarity=0.801 Sum_probs=15.9
Q ss_pred cceeeccccccccEEEcCCCCccccHHhH
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCG 323 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~ 323 (350)
+..||+|-|...---. |- .+|..|-
T Consensus 15 ~ElCPVCGDkVSGYHY---GL-LTCESCK 39 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHY---GL-LTCESCK 39 (475)
T ss_pred ccccccccCcccccee---ee-eehhhhh
Confidence 4679999888765432 33 4566663
No 136
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=41.28 E-value=21 Score=35.25 Aligned_cols=32 Identities=28% Similarity=0.681 Sum_probs=27.4
Q ss_pred CcceeeccccccccEEEcCCC--CccccHHhHHHH
Q 036765 294 DAKLCVICYDDQRNCFFVPCG--HCATCYDCGQRI 326 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCG--H~~~C~~C~~~~ 326 (350)
....|..|-|....+..++|. | ++|.+|...+
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~H-vtC~dCFr~y 253 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRH-VTCLDCFRLY 253 (446)
T ss_pred ccceeEEecCCccceEEEecCCce-eehHHhhhhH
Confidence 456899999988888888998 9 9999998865
No 137
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=40.76 E-value=18 Score=35.71 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=33.5
Q ss_pred cCcceeeccccccc---cEEEcCCCCccccHHhHHHHhhcCC--CCCccccc
Q 036765 293 YDAKLCVICYDDQR---NCFFVPCGHCATCYDCGQRIMKDDS--KVCPICRT 339 (350)
Q Consensus 293 ~~~~~C~IC~d~~~---~~v~lpCGH~~~C~~C~~~~~~~~~--~~CPiCR~ 339 (350)
..-+.||+=-+... .++.+.||| +.=.+-+.++.+.+. -+||-|-.
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgH-VIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGH-VISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccc-eeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34578999544322 267779999 888999999987743 36999954
No 138
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.04 E-value=17 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=18.4
Q ss_pred CCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 314 GHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 314 GH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
-| .||.+|..... ...||.|...+.
T Consensus 28 Ec-TFCadCae~~l---~g~CPnCGGelv 52 (84)
T COG3813 28 EC-TFCADCAENRL---HGLCPNCGGELV 52 (84)
T ss_pred ee-ehhHhHHHHhh---cCcCCCCCchhh
Confidence 35 78999998543 478999976553
No 139
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=39.62 E-value=9.7 Score=32.81 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred EEEecCCCccceeEEeecCCeeEEEEEEecCC-CCceEEEEE
Q 036765 43 FLMVGSYSRKGISLWLNKGSGIRMRWETRASK-LNQTQLVII 83 (350)
Q Consensus 43 ~~~v~~~~~k~~~~~ln~gs~~~~~~~~~~~~-~~~~~~~i~ 83 (350)
.+.|+++..+=....+.+|..|.++|.|.+.. ...+.+.|.
T Consensus 3 ~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~ 44 (183)
T PF01105_consen 3 TFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIR 44 (183)
T ss_dssp ------------------------------------------
T ss_pred EEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEE
Confidence 35577888888888999999999999998554 466677666
No 140
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=38.59 E-value=22 Score=26.15 Aligned_cols=24 Identities=29% Similarity=0.843 Sum_probs=19.4
Q ss_pred cccHHhHHHHhhcCCCCCccccccccc
Q 036765 317 ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 317 ~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.||.+|...+.. ..||.|.+.+..
T Consensus 30 TFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 30 TFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred cccHHHHHHHhc---CcCcCCCCcccc
Confidence 689999998852 679999887654
No 141
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.18 E-value=22 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.761 Sum_probs=15.3
Q ss_pred CCCCccccHHhHHHHhhcCCCCCcccc
Q 036765 312 PCGHCATCYDCGQRIMKDDSKVCPICR 338 (350)
Q Consensus 312 pCGH~~~C~~C~~~~~~~~~~~CPiCR 338 (350)
.|++ .||.+|-.-+-+. ...||-|.
T Consensus 26 ~C~~-~FC~dCD~fiHE~-LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKN-HFCIDCDVFIHET-LHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTT-S-SSSTT-
T ss_pred CCCC-ccccCcChhhhcc-ccCCcCCC
Confidence 5788 8999997766443 57799984
No 142
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.75 E-value=21 Score=33.66 Aligned_cols=25 Identities=32% Similarity=0.930 Sum_probs=20.8
Q ss_pred ccccHHhHHHHhhcCCCCCccccccc
Q 036765 316 CATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 316 ~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
|-.|..|...+-++ ...||+|...-
T Consensus 194 MK~C~sC~qqIHRN-APiCPlCK~Ks 218 (230)
T PF10146_consen 194 MKTCQSCHQQIHRN-APICPLCKAKS 218 (230)
T ss_pred cchhHhHHHHHhcC-CCCCccccccc
Confidence 67999999999665 78999997653
No 143
>PLN02195 cellulose synthase A
Probab=33.05 E-value=38 Score=38.28 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=31.6
Q ss_pred cceeeccccccc-----cE--EEcCCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 295 AKLCVICYDDQR-----NC--FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 295 ~~~C~IC~d~~~-----~~--v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
...|.||=|... ++ +.--||- ..|+.|.+-=.+.+.+.||.|.+...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~-pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSY-PLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCC-ccccchhhhhhhcCCccCCccCCccc
Confidence 457999988532 22 2234555 58999995544445678999998765
No 144
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.68 E-value=33 Score=37.64 Aligned_cols=39 Identities=31% Similarity=0.619 Sum_probs=27.8
Q ss_pred ceeecccccccc--EEEcCCCCccccHHhHHHHhhcCCCCCcc
Q 036765 296 KLCVICYDDQRN--CFFVPCGHCATCYDCGQRIMKDDSKVCPI 336 (350)
Q Consensus 296 ~~C~IC~d~~~~--~v~lpCGH~~~C~~C~~~~~~~~~~~CPi 336 (350)
..|.||.-..+. .+...||| +....|...|++. ...||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~H-v~H~sc~~eWf~~-gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGH-VGHTSCMMEWFRT-GDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccc-cccHHHHHHHHhc-CCcCCC
Confidence 457777554433 33468999 9999999999987 456773
No 145
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=29.38 E-value=23 Score=34.93 Aligned_cols=42 Identities=24% Similarity=0.592 Sum_probs=21.3
Q ss_pred ccEEEcCCCCccccHHhHHHH-hhcCCCCCccccccccceeecc
Q 036765 306 RNCFFVPCGHCATCYDCGQRI-MKDDSKVCPICRTLIHKVRRLF 348 (350)
Q Consensus 306 ~~~v~lpCGH~~~C~~C~~~~-~~~~~~~CPiCR~~I~~~~ri~ 348 (350)
..-+.+.|||..=-.+-..+- ...+...||+||.. ..++.+|
T Consensus 315 QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~-gp~V~L~ 357 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV-GPYVPLW 357 (429)
T ss_pred CCeEEEeccccccccccccccccCcccCcCCeeeee-cceeeee
Confidence 346788999932211111111 01124679999863 3344443
No 146
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=28.34 E-value=37 Score=37.66 Aligned_cols=49 Identities=18% Similarity=0.486 Sum_probs=35.4
Q ss_pred cCcceeeccccccccEE-Ec---CCCCccccHHhHHHHhhcC------CCCCcccccccc
Q 036765 293 YDAKLCVICYDDQRNCF-FV---PCGHCATCYDCGQRIMKDD------SKVCPICRTLIH 342 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-~l---pCGH~~~C~~C~~~~~~~~------~~~CPiCR~~I~ 342 (350)
.+.-+|.||++...... .+ .|-| +|...|+.+|.+.. .=+||.|+..-.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYh-VFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYH-VFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhh-hhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 45679999999865522 22 4669 89999999997752 235999985443
No 147
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=28.30 E-value=20 Score=35.29 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=29.2
Q ss_pred CcceeeccccccccEEE-c--CCC--CccccHHhHHHHhhcCCCCCccccc
Q 036765 294 DAKLCVICYDDQRNCFF-V--PCG--HCATCYDCGQRIMKDDSKVCPICRT 339 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~-l--pCG--H~~~C~~C~~~~~~~~~~~CPiCR~ 339 (350)
....||||=..+.-.+. . .=| | ..|.-|...|.-. ...||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~Ry-L~CslC~teW~~~-R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRY-LHCNLCESEWHVV-RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceE-EEcCCCCCccccc-CccCCCCCC
Confidence 45789999877643322 1 123 3 4688898887443 578999975
No 148
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.99 E-value=14 Score=36.19 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=29.8
Q ss_pred CcceeeccccccccEEEcC----CC--CccccHHhHHHHhhcCCCCCcccccc
Q 036765 294 DAKLCVICYDDQRNCFFVP----CG--HCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lp----CG--H~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
....||||=..+.-.++.. =| | ..|.-|...|.-. ..+||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~Ry-L~CslC~teW~~~-R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRY-LSCSLCATEWHYV-RVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceE-EEcCCCCCccccc-CccCCCCCCC
Confidence 3468999987764332211 23 4 5788898887443 5789999764
No 149
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.78 E-value=9.6 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.737 Sum_probs=12.5
Q ss_pred CccccHHhHHHHhhcC---CCCCccccc
Q 036765 315 HCATCYDCGQRIMKDD---SKVCPICRT 339 (350)
Q Consensus 315 H~~~C~~C~~~~~~~~---~~~CPiCR~ 339 (350)
| .||..|........ ...||.|..
T Consensus 3 ~-rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 H-RFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp T-SB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred C-cccCcCCccccCCCCcCEeECCCCcC
Confidence 6 68888887764432 346888865
No 150
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=26.83 E-value=38 Score=36.91 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=33.0
Q ss_pred cCcceeeccccccccEE-------EcCCCCcc----------------------ccHHhHHHHhhc-------CCCCCcc
Q 036765 293 YDAKLCVICYDDQRNCF-------FVPCGHCA----------------------TCYDCGQRIMKD-------DSKVCPI 336 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-------~lpCGH~~----------------------~C~~C~~~~~~~-------~~~~CPi 336 (350)
.+-..|.-|+.+.-|+- |+.|-|+- .|.+|.....+. ....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 45678999998755532 55666621 599999987554 1345999
Q ss_pred ccccc
Q 036765 337 CRTLI 341 (350)
Q Consensus 337 CR~~I 341 (350)
|--.+
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 96544
No 151
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=26.47 E-value=18 Score=22.29 Aligned_cols=7 Identities=57% Similarity=1.459 Sum_probs=3.4
Q ss_pred CCCcccc
Q 036765 332 KVCPICR 338 (350)
Q Consensus 332 ~~CPiCR 338 (350)
..||.|.
T Consensus 15 ~~Cp~CG 21 (26)
T PF10571_consen 15 KFCPHCG 21 (26)
T ss_pred CcCCCCC
Confidence 4455553
No 152
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=26.24 E-value=14 Score=22.53 Aligned_cols=22 Identities=41% Similarity=0.982 Sum_probs=12.0
Q ss_pred ccHHhHHHHhhcCCCCCcccccc
Q 036765 318 TCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 318 ~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
+|..|...+ ..+..-||.|-++
T Consensus 4 ~Cp~Cg~~~-~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 4 FCPNCGAEI-DPDAKFCPNCGAK 25 (26)
T ss_pred CCcccCCcC-CcccccChhhCCC
Confidence 566666543 2224567777654
No 153
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=41 Score=30.63 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=35.9
Q ss_pred Ccceeecccccccc-------EEEcCCCCccccHHhHHHHhhc----C------CCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN-------CFFVPCGHCATCYDCGQRIMKD----D------SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~-------~v~lpCGH~~~C~~C~~~~~~~----~------~~~CPiCR~~I~~ 343 (350)
+-..|-||+.-.-+ +--..||. .|..-|+..|.+. + -+.||-|..+|.-
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgk-pFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGK-PFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCC-cHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 44678888764332 23468999 8999999998774 1 2579999998864
No 154
>PF12773 DZR: Double zinc ribbon
Probab=25.95 E-value=31 Score=23.87 Aligned_cols=27 Identities=26% Similarity=0.645 Sum_probs=17.4
Q ss_pred cccHHhHHHHh--hcCCCCCccccccccc
Q 036765 317 ATCYDCGQRIM--KDDSKVCPICRTLIHK 343 (350)
Q Consensus 317 ~~C~~C~~~~~--~~~~~~CPiCR~~I~~ 343 (350)
.||..|...+. ......||.|...+..
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 57777777775 2224568888777554
No 155
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.98 E-value=17 Score=34.78 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=34.0
Q ss_pred cceeeccccccc------cEEEcC--------CCCccccHHhHHHHhhcCCCCCcccccc
Q 036765 295 AKLCVICYDDQR------NCFFVP--------CGHCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 295 ~~~C~IC~d~~~------~~v~lp--------CGH~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
...|.||..... .+.++. ||| ..|.+|...+.......||.||..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~h-tlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGH-TLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHH-HHHhcchHHHHHHhhhcCCcccce
Confidence 467999976544 144556 999 999999999866644789999863
No 156
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=50 Score=33.72 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=27.1
Q ss_pred EEEcCCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 308 CFFVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 308 ~v~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
++.+.||| .|=..|+++|.... ...||.|...-.+
T Consensus 22 ~vsl~cgh-lFgs~cie~wl~k~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 22 IVSLQCGH-LFGSQCIEKWLGKKTKMQCPLCSGKATK 57 (463)
T ss_pred Eeeecccc-cccHHHHHHHHhhhhhhhCcccCChhHH
Confidence 56778999 89999999997532 3569999865443
No 157
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=24.77 E-value=26 Score=24.94 Aligned_cols=12 Identities=25% Similarity=0.922 Sum_probs=6.1
Q ss_pred CCCccccccccc
Q 036765 332 KVCPICRTLIHK 343 (350)
Q Consensus 332 ~~CPiCR~~I~~ 343 (350)
..||+|.++++.
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 379999988764
No 158
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=24.56 E-value=40 Score=31.81 Aligned_cols=25 Identities=28% Similarity=0.919 Sum_probs=20.2
Q ss_pred ccccHHhHHHHhhcCCCCCccccccc
Q 036765 316 CATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 316 ~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
|-.|-.|...+-+. ...||+|...-
T Consensus 249 MK~ClsChqqIHRN-APiCPlCKaKs 273 (286)
T KOG4451|consen 249 MKVCLSCHQQIHRN-APICPLCKAKS 273 (286)
T ss_pred chHHHHHHHHHhcC-CCCCcchhhcc
Confidence 36899999998665 68999997654
No 159
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=24.55 E-value=64 Score=26.56 Aligned_cols=44 Identities=23% Similarity=0.469 Sum_probs=24.5
Q ss_pred ceeeccccccccEEE--------cCC--CCccccHHhHHHHhhc--------CCCCCccccc
Q 036765 296 KLCVICYDDQRNCFF--------VPC--GHCATCYDCGQRIMKD--------DSKVCPICRT 339 (350)
Q Consensus 296 ~~C~IC~d~~~~~v~--------lpC--GH~~~C~~C~~~~~~~--------~~~~CPiCR~ 339 (350)
..|-.|+....+... ..| .+..||..|+..-... ..-.||.||.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 446666654443221 234 1236999997653322 2345999986
No 160
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.64 E-value=32 Score=35.35 Aligned_cols=35 Identities=34% Similarity=0.813 Sum_probs=23.6
Q ss_pred EEEcCCCCccccHHhHHHHh-------------------------hcCCCCCccccccccc
Q 036765 308 CFFVPCGHCATCYDCGQRIM-------------------------KDDSKVCPICRTLIHK 343 (350)
Q Consensus 308 ~v~lpCGH~~~C~~C~~~~~-------------------------~~~~~~CPiCR~~I~~ 343 (350)
.+.-+||| .||..|...+- ..+.+.||.|-.+|.+
T Consensus 179 ~v~C~~g~-~FC~~C~~~~H~p~~C~~~~~wl~k~~~~se~~~wi~~ntk~CP~c~~~iek 238 (444)
T KOG1815|consen 179 EVDCGCGH-EFCFACGEESHSPVSCPGAKKWLKKCRDDSETINWILANTKECPKCKVPIEK 238 (444)
T ss_pred ceeCCCCc-hhHhhccccccCCCcccchHHHHHhhhhhhhhhhhhhccCccCCCcccchhc
Confidence 44558899 88999865432 1234569999888765
No 161
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=23.16 E-value=2.7e+02 Score=22.03 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=26.9
Q ss_pred EEEecCCCCCCCcceeeeeeeEEEecCC-------CccceeEEe------ecCCeeEEEEEEe
Q 036765 22 LLYGFSEKPQLTHETNWTVSNFLMVGSY-------SRKGISLWL------NKGSGIRMRWETR 71 (350)
Q Consensus 22 ~lyg~~~~p~l~~~~~w~~~~~~~v~~~-------~~k~~~~~l------n~gs~~~~~~~~~ 71 (350)
+++||| |-++..+|....... ..+ -...|+|.+ ..++.-.+++.|.
T Consensus 23 ~a~gFy---P~~I~v~W~~~g~~~-~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~ 81 (94)
T cd05767 23 FVDNFF---PPVLNVTWLKNGVPV-TDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVE 81 (94)
T ss_pred EEEEEE---CCcCEEEEEECCeEc-cCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEE
Confidence 578999 466888997664432 221 123577776 3344444555555
No 162
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.58 E-value=25 Score=23.88 Aligned_cols=9 Identities=33% Similarity=0.936 Sum_probs=7.6
Q ss_pred CCCCccccc
Q 036765 331 SKVCPICRT 339 (350)
Q Consensus 331 ~~~CPiCR~ 339 (350)
...||.|.+
T Consensus 26 ~~~CP~Cg~ 34 (42)
T PF09723_consen 26 PVPCPECGS 34 (42)
T ss_pred CCcCCCCCC
Confidence 467999988
No 163
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=21.52 E-value=41 Score=27.18 Aligned_cols=38 Identities=24% Similarity=0.635 Sum_probs=26.8
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...|-||-.... .=|| -+|..|+-. ...|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~-----q~g~-~YCq~CAYk-----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVH-----QPGA-KYCQTCAYK-----KGICAMCGKKILD 81 (90)
T ss_pred Cccccccccccc-----cCCC-ccChhhhcc-----cCcccccCCeecc
Confidence 346999964322 2276 799999655 3789999988843
No 164
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.14 E-value=52 Score=28.43 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=18.5
Q ss_pred eeccccccccEEEcCCCCccccHH
Q 036765 298 CVICYDDQRNCFFVPCGHCATCYD 321 (350)
Q Consensus 298 C~IC~d~~~~~v~lpCGH~~~C~~ 321 (350)
=-||.+..+.++--.||| .||..
T Consensus 60 lfi~qs~~~rv~rcecgh-sf~d~ 82 (165)
T COG4647 60 LFICQSAQKRVIRCECGH-SFGDY 82 (165)
T ss_pred EEEEecccccEEEEeccc-cccCh
Confidence 567888888877779999 89864
No 165
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=20.77 E-value=43 Score=36.67 Aligned_cols=49 Identities=27% Similarity=0.733 Sum_probs=34.1
Q ss_pred cCcceeeccccccccEE-------EcCCCCcc----------------------ccHHhHHHHhhc-------CCCCCcc
Q 036765 293 YDAKLCVICYDDQRNCF-------FVPCGHCA----------------------TCYDCGQRIMKD-------DSKVCPI 336 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-------~lpCGH~~----------------------~C~~C~~~~~~~-------~~~~CPi 336 (350)
.+-..|.-|+.+..|+. |+.|-|+- .|.+|..++.+. ....||.
T Consensus 66 pD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~ 145 (711)
T TIGR00143 66 ADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPR 145 (711)
T ss_pred CchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCC
Confidence 46678999998765533 56666621 699999998553 1356999
Q ss_pred ccccc
Q 036765 337 CRTLI 341 (350)
Q Consensus 337 CR~~I 341 (350)
|--.+
T Consensus 146 Cgp~l 150 (711)
T TIGR00143 146 CGPQL 150 (711)
T ss_pred CCcEE
Confidence 97655
No 166
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.09 E-value=48 Score=29.71 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=14.6
Q ss_pred Ccceeeccccccc--c-EEEcCCC
Q 036765 294 DAKLCVICYDDQR--N-CFFVPCG 314 (350)
Q Consensus 294 ~~~~C~IC~d~~~--~-~v~lpCG 314 (350)
+..+|.||++... + ++-+||=
T Consensus 176 dkGECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceE
Confidence 5678999998743 3 4556774
Done!