Query 036765
Match_columns 350
No_of_seqs 274 out of 1381
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 3.8E-14 1.3E-18 106.9 4.4 53 293-350 13-65 (68)
2 2vje_A E3 ubiquitin-protein li 99.4 5.2E-14 1.8E-18 104.8 3.4 56 294-350 7-64 (64)
3 2vje_B MDM4 protein; proto-onc 99.4 7.4E-14 2.5E-18 103.6 3.2 56 294-350 6-63 (63)
4 2yho_A E3 ubiquitin-protein li 99.3 4.5E-13 1.5E-17 103.8 1.5 54 292-350 15-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.2 7.8E-13 2.7E-17 100.9 -0.3 55 291-350 20-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.2 9.9E-13 3.4E-17 100.4 -0.2 54 292-350 22-75 (75)
7 2djb_A Polycomb group ring fin 99.2 1.3E-11 4.6E-16 93.0 5.0 55 289-345 9-64 (72)
8 2d8t_A Dactylidin, ring finger 99.2 1.8E-11 6.3E-16 92.0 4.5 49 293-343 13-61 (71)
9 2ecn_A Ring finger protein 141 99.1 1.6E-11 5.5E-16 91.8 3.2 55 292-349 12-66 (70)
10 2ecy_A TNF receptor-associated 99.1 2.4E-11 8.1E-16 90.0 4.1 52 291-343 11-62 (66)
11 2csy_A Zinc finger protein 183 99.1 4.3E-11 1.5E-15 92.2 5.6 50 292-343 12-61 (81)
12 2ea6_A Ring finger protein 4; 99.1 2.1E-11 7.3E-16 90.3 3.8 51 291-343 11-68 (69)
13 2ysl_A Tripartite motif-contai 99.1 6.2E-11 2.1E-15 89.1 6.1 53 290-343 15-69 (73)
14 1e4u_A Transcriptional repress 99.1 2.9E-11 9.8E-16 93.5 3.2 56 292-348 8-67 (78)
15 2ecw_A Tripartite motif-contai 99.1 1E-10 3.6E-15 89.8 5.7 54 289-343 13-71 (85)
16 2yur_A Retinoblastoma-binding 99.1 6.4E-11 2.2E-15 89.9 4.2 54 289-343 9-64 (74)
17 2ct2_A Tripartite motif protei 99.1 1.2E-10 4E-15 90.5 5.7 53 290-343 10-68 (88)
18 3ng2_A RNF4, snurf, ring finge 99.1 4.4E-11 1.5E-15 89.3 2.7 53 294-348 9-70 (71)
19 2xeu_A Ring finger protein 4; 99.1 6.7E-11 2.3E-15 86.3 3.2 53 294-348 2-63 (64)
20 2egp_A Tripartite motif-contai 99.0 4.3E-11 1.5E-15 91.2 2.1 53 290-343 7-65 (79)
21 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 91.4 4.8 51 290-341 8-60 (92)
22 2ect_A Ring finger protein 126 99.0 9.9E-11 3.4E-15 89.3 4.0 52 291-344 11-65 (78)
23 1t1h_A Gspef-atpub14, armadill 99.0 1.1E-10 3.6E-15 89.1 4.1 51 292-343 5-55 (78)
24 4ayc_A E3 ubiquitin-protein li 99.0 6.8E-11 2.3E-15 100.4 3.3 50 294-345 52-101 (138)
25 1chc_A Equine herpes virus-1 r 99.0 1E-10 3.6E-15 86.8 3.7 53 294-348 4-57 (68)
26 2ecv_A Tripartite motif-contai 99.0 1.3E-10 4.5E-15 89.2 4.3 54 289-343 13-71 (85)
27 2ep4_A Ring finger protein 24; 99.0 8.9E-11 3.1E-15 88.7 3.2 56 291-348 11-69 (74)
28 2kiz_A E3 ubiquitin-protein li 99.0 2.8E-10 9.5E-15 84.8 5.1 50 294-345 13-65 (69)
29 3fl2_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 96.6 2.7 51 292-343 49-99 (124)
30 2ysj_A Tripartite motif-contai 99.0 6.4E-10 2.2E-14 81.4 5.5 47 290-337 15-63 (63)
31 1g25_A CDK-activating kinase a 99.0 2.3E-10 7.9E-15 84.4 3.0 48 295-343 3-55 (65)
32 3lrq_A E3 ubiquitin-protein li 99.0 1.8E-10 6.2E-15 92.6 2.4 53 290-343 17-70 (100)
33 2ecm_A Ring finger and CHY zin 99.0 3.2E-10 1.1E-14 80.5 3.4 47 294-342 4-54 (55)
34 2ecj_A Tripartite motif-contai 99.0 4.3E-10 1.5E-14 80.6 4.0 47 290-337 10-58 (58)
35 3hct_A TNF receptor-associated 98.9 4.8E-10 1.6E-14 92.6 4.2 53 290-343 13-65 (118)
36 1iym_A EL5; ring-H2 finger, ub 98.9 4.1E-10 1.4E-14 80.0 3.2 47 294-342 4-54 (55)
37 3t6p_A Baculoviral IAP repeat- 98.9 1.6E-10 5.5E-15 112.7 1.3 55 291-350 291-345 (345)
38 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.4E-15 94.0 1.7 51 292-343 12-62 (115)
39 1wgm_A Ubiquitin conjugation f 98.9 1.5E-09 5.1E-14 87.3 6.4 51 291-343 18-69 (98)
40 2l0b_A E3 ubiquitin-protein li 98.9 7.4E-10 2.5E-14 87.4 4.6 49 293-343 38-89 (91)
41 2kr4_A Ubiquitin conjugation f 98.9 1E-09 3.5E-14 85.8 5.3 51 291-343 10-60 (85)
42 1x4j_A Ring finger protein 38; 98.9 6E-10 2.1E-14 84.4 3.7 48 294-343 22-72 (75)
43 2y43_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 90.3 2.2 52 290-343 17-69 (99)
44 2ckl_A Polycomb group ring fin 98.9 7.5E-10 2.6E-14 89.8 3.6 51 291-343 11-62 (108)
45 1z6u_A NP95-like ring finger p 98.9 5.5E-10 1.9E-14 96.5 2.7 52 292-344 75-126 (150)
46 2y1n_A E3 ubiquitin-protein li 98.8 1.5E-09 5.1E-14 107.0 4.9 54 295-349 332-385 (389)
47 2ckl_B Ubiquitin ligase protei 98.8 9.7E-10 3.3E-14 95.7 3.2 53 290-343 49-102 (165)
48 1rmd_A RAG1; V(D)J recombinati 98.8 1E-09 3.5E-14 90.0 2.9 53 290-343 18-70 (116)
49 2kre_A Ubiquitin conjugation f 98.8 3.3E-09 1.1E-13 85.6 5.2 51 291-343 25-75 (100)
50 1bor_A Transcription factor PM 98.8 4.4E-10 1.5E-14 81.0 -0.3 45 294-343 5-49 (56)
51 1jm7_A BRCA1, breast cancer ty 98.8 8.3E-10 2.8E-14 89.5 0.9 50 293-343 19-70 (112)
52 3knv_A TNF receptor-associated 98.8 2.3E-09 7.7E-14 91.7 2.7 51 290-341 26-76 (141)
53 1v87_A Deltex protein 2; ring- 98.8 3.8E-09 1.3E-13 86.1 3.9 48 295-343 25-94 (114)
54 2c2l_A CHIP, carboxy terminus 98.7 8.4E-09 2.9E-13 95.7 4.6 51 292-343 205-255 (281)
55 3hcs_A TNF receptor-associated 98.7 6.9E-09 2.4E-13 90.6 3.4 53 290-343 13-65 (170)
56 4ap4_A E3 ubiquitin ligase RNF 98.7 6.3E-09 2.2E-13 86.1 2.8 48 294-343 6-60 (133)
57 2ecl_A Ring-box protein 2; RNF 98.7 9.7E-09 3.3E-13 79.3 3.5 47 295-343 15-76 (81)
58 1jm7_B BARD1, BRCA1-associated 98.6 3.2E-09 1.1E-13 87.4 -0.6 49 290-342 17-66 (117)
59 2f42_A STIP1 homology and U-bo 98.6 2.6E-08 8.9E-13 88.5 4.2 51 292-343 103-153 (179)
60 4ap4_A E3 ubiquitin ligase RNF 98.6 2.2E-08 7.4E-13 82.9 2.8 53 294-348 71-132 (133)
61 2yu4_A E3 SUMO-protein ligase 98.6 3.6E-08 1.2E-12 78.3 3.8 47 293-340 5-59 (94)
62 3dpl_R Ring-box protein 1; ubi 98.4 9.7E-08 3.3E-12 77.8 3.8 46 295-342 37-100 (106)
63 3htk_C E3 SUMO-protein ligase 98.2 8E-07 2.7E-11 83.1 5.3 52 291-343 177-232 (267)
64 2d8s_A Cellular modulator of i 98.2 8.8E-07 3E-11 68.5 3.6 51 294-345 14-72 (80)
65 4a0k_B E3 ubiquitin-protein li 98.1 3.2E-07 1.1E-11 76.1 0.2 46 295-342 48-111 (117)
66 1wim_A KIAA0161 protein; ring 98.1 6.1E-07 2.1E-11 70.8 1.3 46 294-340 4-61 (94)
67 3vk6_A E3 ubiquitin-protein li 98.0 5E-06 1.7E-10 66.6 4.2 49 298-347 4-53 (101)
68 2bay_A PRE-mRNA splicing facto 97.9 3E-06 1E-10 62.1 2.3 47 295-343 3-50 (61)
69 2ct0_A Non-SMC element 1 homol 97.4 0.00019 6.5E-09 54.6 5.4 49 294-343 14-64 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 97.2 0.00023 8E-09 51.8 3.2 50 294-343 5-59 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00022 7.7E-09 69.0 -0.6 49 294-343 307-373 (381)
72 2cs3_A Protein C14ORF4, MY039 93.4 0.034 1.2E-06 42.6 2.1 35 294-329 14-52 (93)
73 2ko5_A Ring finger protein Z; 93.1 0.06 2.1E-06 42.4 3.2 52 293-347 26-77 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.058 2E-06 42.2 1.5 31 295-326 3-36 (101)
75 3nw0_A Non-structural maintena 90.6 0.17 5.7E-06 46.4 3.7 48 295-343 180-229 (238)
76 3m62_A Ubiquitin conjugation f 73.3 2.6 8.9E-05 45.8 4.4 52 291-343 887-938 (968)
77 1weo_A Cellulose synthase, cat 70.1 3.2 0.00011 32.3 3.1 50 294-343 15-70 (93)
78 1z5z_A Helicase of the SNF2/RA 50.2 4.7 0.00016 36.9 1.0 58 186-245 24-84 (271)
79 2jne_A Hypothetical protein YF 49.2 1.8 6.3E-05 34.2 -1.6 43 295-344 32-74 (101)
80 2kaf_A Non-structural protein 39.6 8.9 0.0003 27.2 0.8 18 48-65 13-40 (67)
81 1z60_A TFIIH basal transcripti 38.5 17 0.00058 25.9 2.2 40 296-337 16-58 (59)
82 3i2d_A E3 SUMO-protein ligase 36.6 19 0.00065 34.9 2.9 48 294-342 248-299 (371)
83 3mwy_W Chromo domain-containin 35.0 0.71 2.4E-05 49.0 -8.1 115 117-245 410-525 (800)
84 4g9i_A Hydrogenase maturation 35.0 8.6 0.00029 40.9 0.2 49 293-341 104-188 (772)
85 3ttc_A HYPF, transcriptional r 33.5 10 0.00035 39.6 0.4 49 293-341 15-99 (657)
86 4fo9_A E3 SUMO-protein ligase 32.4 25 0.00086 33.9 3.0 48 294-342 214-265 (360)
87 3vth_A Hydrogenase maturation 31.8 14 0.00048 39.2 1.2 49 293-341 109-193 (761)
88 2fiy_A Protein FDHE homolog; F 28.9 9.3 0.00032 36.1 -0.7 46 294-340 181-231 (309)
89 2d8v_A Zinc finger FYVE domain 28.4 27 0.00092 25.5 1.8 32 294-327 7-39 (67)
90 2zet_C Melanophilin; complex, 27.2 6.9 0.00023 33.3 -1.8 45 295-340 68-117 (153)
91 2a20_A Regulating synaptic mem 23.1 11 0.00037 27.1 -1.1 24 293-322 7-31 (62)
92 3mjh_B Early endosome antigen 22.1 18 0.00063 22.9 -0.0 13 294-306 4-16 (34)
93 2jrp_A Putative cytoplasmic pr 21.4 9.6 0.00033 29.0 -1.8 10 334-343 54-63 (81)
94 1m3v_A FLIN4, fusion of the LI 20.8 42 0.0014 26.5 1.9 47 295-343 32-81 (122)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-14 Score=106.86 Aligned_cols=53 Identities=30% Similarity=0.775 Sum_probs=48.2
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
.+...|+||++..++++++||||..+|..|+..+ ..||+||++|..++++|.|
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhceEEeecC
Confidence 3567899999999999999999966999999964 7899999999999999976
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.42 E-value=5.2e-14 Score=104.75 Aligned_cols=56 Identities=32% Similarity=0.782 Sum_probs=50.4
Q ss_pred CcceeeccccccccEEEc--CCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 294 DAKLCVICYDDQRNCFFV--PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
++.+|+||++..++++++ ||||+.+|.+|+.+++.. ...||+||++|..++++|.|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhceEeeecC
Confidence 456899999999999988 999966999999999875 57899999999999999976
No 3
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.41 E-value=7.4e-14 Score=103.58 Aligned_cols=56 Identities=32% Similarity=0.740 Sum_probs=49.7
Q ss_pred CcceeeccccccccEEEc--CCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 294 DAKLCVICYDDQRNCFFV--PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~l--pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
....|+||++..++++++ ||||+.+|.+|+.++++. ...||+||++|..++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEEecC
Confidence 456899999999998777 999966999999999876 57899999999999999964
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.29 E-value=4.5e-13 Score=103.82 Aligned_cols=54 Identities=35% Similarity=1.032 Sum_probs=48.8
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
+.++..|+||++..++++++||||..||..|+.++ ..||+||++|...+++|.|
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECBCT
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEEeC
Confidence 45667899999999999999999955999999887 5899999999999999976
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.23 E-value=7.8e-13 Score=100.92 Aligned_cols=55 Identities=38% Similarity=0.908 Sum_probs=48.5
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
.+.++..|+||++...+++++||||..||..|+..+ ..||+||++|...+++|.+
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEEEECBC-
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCcEEEeeC
Confidence 345678999999999999999999944999999887 7899999999999999864
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=9.9e-13 Score=100.45 Aligned_cols=54 Identities=41% Similarity=0.958 Sum_probs=47.7
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
+.+...|+||++...+++++||||..||..|+.++ ..||+||++|...+++|.+
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCcEEEecC
Confidence 45677899999999999999999944999999764 7899999999999999864
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.3e-11 Score=93.03 Aligned_cols=55 Identities=27% Similarity=0.543 Sum_probs=47.2
Q ss_pred cccccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 289 SDDLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 289 ~~~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
.+.+.+...|+||++...+++.+ +||| .||..|+.+++.. ...||+||+++....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLH-TFCKSCIVRHFYY-SNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCC-EECHHHHHHHHHH-CSSCTTTCCCCCSSC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCC-HHHHHHHHHHHHc-CCcCCCcCcccCccc
Confidence 34456778999999999998886 9999 9999999999876 588999999987643
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-11 Score=92.02 Aligned_cols=49 Identities=29% Similarity=0.595 Sum_probs=43.6
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.+...|+||++...+++.++||| .||..|+.+|... ...||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH-~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKH-VFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTE-EEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCC-HHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 45678999999999999999999 8999999998765 5789999999874
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=91.81 Aligned_cols=55 Identities=29% Similarity=0.725 Sum_probs=47.1
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeeccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~ 349 (350)
..+...|+||++...+ +.+|||| .||..|+.+|... ...||+||+++......|.
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAH-SFCQKCIDKWSDR-HRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTE-EECHHHHHHSSCC-CSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCC-cccHHHHHHHHHC-cCcCCCcCCcccCCCcccc
Confidence 4456789999999999 8889999 8999999998764 6889999999998766654
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.4e-11 Score=90.03 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=45.3
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+...|+||++...+++.++||| .||..|+.+++......||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGH-RFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSC-CCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCC-HHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456789999999999998899999 899999999986445789999999875
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=4.3e-11 Score=92.20 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=44.4
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+...|+||++...+++.++||| .||..|+.+++.. ...||+||+++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRH-YFCESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSC-EEEHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred CCCCCCCcCCCchhcCeeEccCCC-HhHHHHHHHHHHC-CCcCCCcCccccc
Confidence 345678999999999999999999 9999999999876 6789999999863
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.1e-11 Score=90.34 Aligned_cols=51 Identities=29% Similarity=0.683 Sum_probs=43.8
Q ss_pred cccCcceeeccccccccE-------EEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNC-------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+...|+||++...++ +.++||| .||..|+..|... ...||+||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSC-EEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCC-hhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 345678899999987765 8899999 9999999999876 6789999999864
No 13
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.2e-11 Score=89.11 Aligned_cols=53 Identities=30% Similarity=0.706 Sum_probs=45.3
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhc--CCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD--DSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiCR~~I~~ 343 (350)
+...+...|+||++...+++.++||| .||..|+..+++. ....||+||+++..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGH-NFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCC-EEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCC-hhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34556789999999999999999999 8999999999763 24689999999864
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.10 E-value=2.9e-11 Score=93.52 Aligned_cols=56 Identities=29% Similarity=0.664 Sum_probs=45.2
Q ss_pred ccCcceeecccccc--ccEEEcC--CCCccccHHhHHHHhhcCCCCCccccccccceeecc
Q 036765 292 LYDAKLCVICYDDQ--RNCFFVP--CGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348 (350)
Q Consensus 292 ~~~~~~C~IC~d~~--~~~v~lp--CGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~ 348 (350)
.+++..|+||++.. .++.++| ||| .||..|+.++++.....||.||+++.....+|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH-~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGY-QICRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSC-CCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCC-CcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 45678899999977 4566666 999 99999999998765678999999998754444
No 15
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=1e-10 Score=89.82 Aligned_cols=54 Identities=20% Similarity=0.477 Sum_probs=46.1
Q ss_pred cccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcC-----CCCCccccccccc
Q 036765 289 SDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD-----SKVCPICRTLIHK 343 (350)
Q Consensus 289 ~~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~-----~~~CPiCR~~I~~ 343 (350)
.+...+...|+||++...+++.++||| .||..|+..++... ...||+||+++..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 13 LEMIKEEVTCPICLELLKEPVSADCNH-SFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCTTTSCTTTCSCCSSCEECTTSC-CBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHhCccCCCCcCCChhhCcceeCCCCC-HHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 344567789999999999999999999 89999999987762 4689999999874
No 16
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.08 E-value=6.4e-11 Score=89.93 Aligned_cols=54 Identities=28% Similarity=0.709 Sum_probs=45.7
Q ss_pred cccccCcceeeccccccccEEEcC-CCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 289 SDDLYDAKLCVICYDDQRNCFFVP-CGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 289 ~~~~~~~~~C~IC~d~~~~~v~lp-CGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
.+...+...|+||++...+++.++ ||| .||..|+.+++... ...||+||+++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGN-SYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCC-EECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCC-HHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 344567789999999999999999 999 99999999998762 2589999997643
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=90.51 Aligned_cols=53 Identities=25% Similarity=0.682 Sum_probs=44.9
Q ss_pred ccccCcceeecccccccc----EEEcCCCCccccHHhHHHHhhcC--CCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~ 343 (350)
+...+...|+||++...+ ++.++||| .||..|+.+|+... ...||+||+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGH-TICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSC-EEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCC-hhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 344567889999999988 99999999 99999999998763 3689999998753
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.06 E-value=4.4e-11 Score=89.32 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=44.6
Q ss_pred CcceeeccccccccE-------EEcCCCCccccHHhHHHHhhcCCCCCccccccccc--eeecc
Q 036765 294 DAKLCVICYDDQRNC-------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK--VRRLF 348 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~ri~ 348 (350)
++..|+||++...++ +.++||| .||..|+.+|.+. ...||+||+++.. +.++|
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSC-EEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCC-hHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence 567899999987775 8899999 9999999999876 5789999999874 44544
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=6.7e-11 Score=86.32 Aligned_cols=53 Identities=28% Similarity=0.729 Sum_probs=44.6
Q ss_pred CcceeeccccccccE-------EEcCCCCccccHHhHHHHhhcCCCCCcccccccc--ceeecc
Q 036765 294 DAKLCVICYDDQRNC-------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH--KVRRLF 348 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~--~~~ri~ 348 (350)
++..|+||++...++ +.++||| .||.+|+.+|.+. ...||+||+++. .+.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSC-EEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCC-chhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence 346799999987764 7889999 8999999999876 678999999987 456665
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.05 E-value=4.3e-11 Score=91.21 Aligned_cols=53 Identities=23% Similarity=0.549 Sum_probs=45.2
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcC------CCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD------SKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~------~~~CPiCR~~I~~ 343 (350)
+...+...|+||++...+++.++||| .||..|+.+++... ...||+||+++..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH-~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGH-SLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSC-CCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCC-HHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 34556789999999999999999999 99999999987652 4679999999864
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=91.41 Aligned_cols=51 Identities=29% Similarity=0.759 Sum_probs=44.2
Q ss_pred ccccCcceeeccccccccEEEcC-CCCccccHHhHHHHhhcC-CCCCccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVP-CGHCATCYDCGQRIMKDD-SKVCPICRTLI 341 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lp-CGH~~~C~~C~~~~~~~~-~~~CPiCR~~I 341 (350)
+.+.+...|+||++...+++.+| ||| .||..|+..++... ...||+||.++
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGN-SYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCC-EECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCC-HHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34557789999999999999999 999 99999999998652 36899999987
No 22
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.04 E-value=9.9e-11 Score=89.30 Aligned_cols=52 Identities=21% Similarity=0.516 Sum_probs=42.7
Q ss_pred cccCcceeeccccccc---cEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 291 DLYDAKLCVICYDDQR---NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
...+...|+||++... ....++||| .||..|+.+|++. ...||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNH-LFHDSCIVPWLEQ-HDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSC-EEETTTTHHHHTT-TCSCTTTCCCCCCS
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCC-eecHHHHHHHHHc-CCcCcCcCCccCCc
Confidence 3456788999988764 356789999 8999999999876 57899999998764
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.04 E-value=1.1e-10 Score=89.12 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=45.2
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+...|+||++...+++.++||| .||..|+.+++..+...||+||+++..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH-~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQ-TYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTE-EEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCC-eecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 346788999999999999999999 999999999987656789999999864
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.04 E-value=6.8e-11 Score=100.42 Aligned_cols=50 Identities=30% Similarity=0.622 Sum_probs=44.3
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
++..|+||++...+++.+|||| .||..|+..|+.. ...||+||.++....
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAH-SFCSYCINEWMKR-KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSC-EEEHHHHHHHTTT-CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccCCceECCCCC-CccHHHHHHHHHc-CCcCCCCCCcCCCCC
Confidence 4567999999999999999999 9999999999876 678999999987643
No 25
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.04 E-value=1e-10 Score=86.75 Aligned_cols=53 Identities=34% Similarity=0.807 Sum_probs=45.4
Q ss_pred Ccceeecccccccc-EEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecc
Q 036765 294 DAKLCVICYDDQRN-CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348 (350)
Q Consensus 294 ~~~~C~IC~d~~~~-~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~ 348 (350)
++..|+||++...+ .+.+|||| .||..|+.+|... ...||+||+++...++.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLH-AFCYVCITRWIRQ-NPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTE-EESTTHHHHHHHH-SCSTTTTCCCCCCEECCC
T ss_pred CCCCCeeCCccccCCcEecCCCC-eeHHHHHHHHHhC-cCcCcCCChhhHhhhhcc
Confidence 34679999999988 48899999 8999999999876 578999999998876654
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=89.24 Aligned_cols=54 Identities=24% Similarity=0.557 Sum_probs=45.9
Q ss_pred cccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhc-----CCCCCccccccccc
Q 036765 289 SDDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD-----DSKVCPICRTLIHK 343 (350)
Q Consensus 289 ~~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~-----~~~~CPiCR~~I~~ 343 (350)
.+...+...|+||++...+++.++||| .||..|+..++.. ....||+||+.+..
T Consensus 13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 13 LVNVKEEVTCPICLELLTQPLSLDCGH-SFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCTTTCSCCSSCBCCSSSC-CBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHccCCCCCCCCCcccCCceeCCCCC-HHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 344567789999999999999999999 9999999998765 25789999999874
No 27
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=8.9e-11 Score=88.65 Aligned_cols=56 Identities=29% Similarity=0.628 Sum_probs=45.3
Q ss_pred cccCcceeecccccccc---EEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecc
Q 036765 291 DLYDAKLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLF 348 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~ 348 (350)
+..++..|+||++...+ ...+|||| .||..|+.+|++. ...||+||+++....++-
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H-~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKH-AFHRKCLIKWLEV-RKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTE-EEEHHHHHHHHHH-CSBCTTTCCBCSSCCSCC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCC-EecHHHHHHHHHc-CCcCCCcCcccccccccC
Confidence 34566789999998654 45669999 8999999999877 568999999998766553
No 28
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=2.8e-10 Score=84.75 Aligned_cols=50 Identities=28% Similarity=0.527 Sum_probs=42.1
Q ss_pred Ccceeecccccc---ccEEEcCCCCccccHHhHHHHhhcCCCCCcccccccccee
Q 036765 294 DAKLCVICYDDQ---RNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~---~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ 345 (350)
+...|+||++.. ..++.+|||| .||..|+..|+.. ...||+||+.+....
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMH-LFHQVCVDQWLIT-NKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSC-EEEHHHHHHHHHH-CSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCC-HHHHHHHHHHHHc-CCCCcCcCccccCcC
Confidence 457899998875 4578899999 8999999999877 578999999988654
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.99 E-value=1.3e-10 Score=96.65 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=45.3
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+...|+||++...+++.+|||| .||..|+..++......||+||+++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQH-NVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSC-EEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCC-cccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456688999999999999999999 999999999987645689999999875
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=6.4e-10 Score=81.37 Aligned_cols=47 Identities=30% Similarity=0.725 Sum_probs=40.7
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhc--CCCCCccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD--DSKVCPIC 337 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiC 337 (350)
+...++..|+||++...+++.++||| .||..|+.++++. ....||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGH-NFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSS-EECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCC-cchHHHHHHHHHcCCCCCcCcCC
Confidence 34567789999999999999999999 8999999999874 34689998
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=2.3e-10 Score=84.39 Aligned_cols=48 Identities=29% Similarity=0.618 Sum_probs=39.8
Q ss_pred cceeecccc-ccccE----EEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYD-DQRNC----FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d-~~~~~----v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+..|+||++ ...++ +.++||| .||.+|+.+++......||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGH-TLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCC-CEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCC-HhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 467999999 55554 5789999 999999999977655789999999874
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.95 E-value=1.8e-10 Score=92.56 Aligned_cols=53 Identities=23% Similarity=0.691 Sum_probs=46.1
Q ss_pred ccccCcceeeccccccccEEE-cCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFF-VPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~-lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+.+...|+||++...+++. ++||| .||..|+..|+......||+||.++..
T Consensus 17 ~~l~~~~~C~IC~~~~~~p~~~~~CgH-~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 17 ESIAEVFRCFICMEKLRDARLCPHCSK-LCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCC-EEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCccCCccccCccccCCCCC-hhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 345677899999999999999 99999 999999999988744689999999864
No 33
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.95 E-value=3.2e-10 Score=80.50 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=40.7
Q ss_pred Ccceeecccccccc----EEEcCCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
++..|+||++...+ ++.++||| .||..|+.+|... ...||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGH-LLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSC-EEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCC-cccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 34679999998755 88899999 9999999999887 488999999875
No 34
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.3e-10 Score=80.56 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=39.9
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhc--CCCCCccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKD--DSKVCPIC 337 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~--~~~~CPiC 337 (350)
+...+...|+||++...+++.++||| .||..|+.+++.. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGH-NFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCC-CCCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCC-ccCHHHHHHHHHhcCCCCCCCCC
Confidence 33456788999999999999999999 8999999999654 35789998
No 35
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.93 E-value=4.8e-10 Score=92.59 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=46.1
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...+...|+||++...+++.++||| .||..|+..++......||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGH-RFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSC-EEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCC-hhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34556789999999999999999999 999999999987644589999999875
No 36
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.93 E-value=4.1e-10 Score=79.99 Aligned_cols=47 Identities=28% Similarity=0.779 Sum_probs=40.0
Q ss_pred Ccceeecccccccc---EEEcC-CCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 294 DAKLCVICYDDQRN---CFFVP-CGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~---~v~lp-CGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
++..|+||++...+ +..++ ||| .||..|+.+|.+. ...||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H-~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCC-EECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCC-cccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 45679999998776 67777 999 8999999999776 678999998864
No 37
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.93 E-value=1.6e-10 Score=112.66 Aligned_cols=55 Identities=35% Similarity=0.948 Sum_probs=48.1
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeecccC
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFTP 350 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~p 350 (350)
.+.++..|+||++...+++++||||.+||..|+..+ ..||+||++|..++++|.+
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEEEECC--
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCeEEeecC
Confidence 345678999999999999999999955999999887 7899999999999999964
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.92 E-value=2.2e-10 Score=93.97 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=44.7
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..++..|+||++...+++.++||| .||..|+.+++......||+||+.+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNH-TLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSC-EECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCC-HHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999999999999999 999999999976645789999998863
No 39
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.92 E-value=1.5e-09 Score=87.32 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=46.0
Q ss_pred cccCcceeeccccccccEEEcCCC-CccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCG-HCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCG-H~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+...||||++.++|++.++|| | .||+.|+.+++.. ...||+||+++..
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~h-tf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRV-TVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCC-EEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred cCcHhcCCcCccccccCCeECCCCCe-EECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 446789999999999999999999 9 9999999999986 5789999999864
No 40
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.92 E-value=7.4e-10 Score=87.44 Aligned_cols=49 Identities=24% Similarity=0.548 Sum_probs=42.0
Q ss_pred cCcceeecccccccc---EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.++..|+||++...+ +..+|||| .||..|+..|+.. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H-~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHH-YFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTE-EEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCC-hHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 356789999988766 77889999 9999999999876 5789999998865
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.91 E-value=1e-09 Score=85.82 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=45.9
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+...|+||++.+++++.++||| .||+.|+.+++.. ...||+||+++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGh-tf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGT-VMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSC-EEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCC-EECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 3457899999999999999999999 9999999999986 5789999998764
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=6e-10 Score=84.44 Aligned_cols=48 Identities=31% Similarity=0.729 Sum_probs=40.8
Q ss_pred Ccceeecccccccc---EEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN---CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~---~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...|+||++...+ +..+|||| .||..|+.+|... ...||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H-~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNH-EFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTE-EEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCC-HhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45789999987655 47789999 8999999999876 5789999998865
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.90 E-value=3.5e-10 Score=90.28 Aligned_cols=52 Identities=21% Similarity=0.591 Sum_probs=45.3
Q ss_pred ccccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...+...|+||++...+++.+ +||| .||..|+.+++.. ...||+||+++..
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCSH-NYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTCC-EEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred HhCCCCCCcccCChhhCCcCEECCCCC-HhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 3445678999999999999887 8999 9999999999876 5789999998874
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.88 E-value=7.5e-10 Score=89.82 Aligned_cols=51 Identities=33% Similarity=0.700 Sum_probs=45.2
Q ss_pred cccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.+.+...|+||++...+++.+ +||| .||..|+..++.. ...||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLH-SFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCC-EEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCC-hhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 345678999999999999987 9999 9999999999876 5889999999875
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.88 E-value=5.5e-10 Score=96.48 Aligned_cols=52 Identities=31% Similarity=0.556 Sum_probs=45.6
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
..+...|+||++...+++.+|||| .||..|+.+++......||+||.++...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFH-NVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSC-EEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CccCCEeecCChhhcCCEEcCCCC-chhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 346689999999999999999999 9999999999887445899999998753
No 46
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.85 E-value=1.5e-09 Score=107.04 Aligned_cols=54 Identities=28% Similarity=0.733 Sum_probs=47.2
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeeccc
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRLFT 349 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri~~ 349 (350)
...|+||++...+++.+|||| .||..|+..|.......||+||+++.....+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH-~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGH-LMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCC-EECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCC-hhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 468999999999999999999 899999999877446889999999998766643
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.84 E-value=9.7e-10 Score=95.74 Aligned_cols=53 Identities=30% Similarity=0.652 Sum_probs=45.2
Q ss_pred ccccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....+...|+||++...+++.+ +||| .||..|+..|+......||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLH-RFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCC-EEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCC-hhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3445678999999999999877 9999 999999999988656789999999853
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=1e-09 Score=90.04 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=46.2
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....+...|+||++...+++.++||| .||..|+.+++......||+||.++..
T Consensus 18 ~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 18 AHFVKSISCQICEHILADPVETSCKH-LFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTSC-EEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhccCCCCCCCCCcHhcCcEEcCCCC-cccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34456789999999999999999999 999999999987645789999999864
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=3.3e-09 Score=85.57 Aligned_cols=51 Identities=16% Similarity=0.034 Sum_probs=45.9
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...+...||||++.+++++.++||| .||+.|+.+++.. ...||+||+++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGh-tf~r~~I~~~l~~-~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGT-IMDRSIILRHLLN-SPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTE-EEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCC-EEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence 3467899999999999999999999 9999999999985 6889999999864
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=4.4e-10 Score=80.96 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=39.5
Q ss_pred CcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...|+||++...+++.+|||| .||..|+..+ ...||+||+.+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH-~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLH-TLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSC-CSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCC-cccHHHHccC----CCCCCcCCcEeec
Confidence 4577999999999999999999 9999998773 4789999998864
No 51
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=8.3e-10 Score=89.54 Aligned_cols=50 Identities=24% Similarity=0.582 Sum_probs=43.2
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcC--CCCCccccccccc
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDD--SKVCPICRTLIHK 343 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~--~~~CPiCR~~I~~ 343 (350)
.+...|+||++...+++.++||| .||..|+..++... ...||+||+++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDH-IFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSC-CCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCC-HHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45678999999999999999999 99999999998762 2479999998874
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.76 E-value=2.3e-09 Score=91.73 Aligned_cols=51 Identities=27% Similarity=0.522 Sum_probs=44.8
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLI 341 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I 341 (350)
+.+.+...|+||++...+++.++||| .||..|+.+++......||+||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH-~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGH-RYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSC-EEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCC-ccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567889999999999999999999 9999999999876445899999975
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.76 E-value=3.8e-09 Score=86.15 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=38.7
Q ss_pred cceeeccccccccE------------------EEcCCCCccccHHhHHHHhhc----CCCCCccccccccc
Q 036765 295 AKLCVICYDDQRNC------------------FFVPCGHCATCYDCGQRIMKD----DSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~~------------------v~lpCGH~~~C~~C~~~~~~~----~~~~CPiCR~~I~~ 343 (350)
+..|+||++...+. ..++||| .||..|+..|+.. ....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H-~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH-AFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCC-EECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCC-cccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 35799999987543 3789999 9999999999852 24689999998864
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=8.4e-09 Score=95.75 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=45.0
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+...|+||++.+.+++.+|||| .||+.|+.+++......||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh-~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGI-TYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCC-EEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcCCeECCCCC-EECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 346789999999999999999999 999999999998644559999999864
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=6.9e-09 Score=90.63 Aligned_cols=53 Identities=26% Similarity=0.604 Sum_probs=46.2
Q ss_pred ccccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
..+.+...|+||++...+++.++||| .||..|+.+++......||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGH-RFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSC-EEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCC-HHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34557789999999999999999999 999999999987644589999999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.67 E-value=6.3e-09 Score=86.11 Aligned_cols=48 Identities=31% Similarity=0.757 Sum_probs=42.4
Q ss_pred CcceeeccccccccE-------EEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNC-------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+...|+||++...++ +.++||| .||.+|+.+|++. ...||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCC-EEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCC-hhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 457899999998776 8899999 9999999999876 5789999999874
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=9.7e-09 Score=79.35 Aligned_cols=47 Identities=21% Similarity=0.482 Sum_probs=36.4
Q ss_pred cceeecccccccc--------------EE-EcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYDDQRN--------------CF-FVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~--------------~v-~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+..|+||++...+ ++ ..+||| .||..|+.+|... ...||+||+++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H-~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNH-SFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSC-EEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCC-ccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 4557777776643 43 445999 9999999999877 5789999998764
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=3.2e-09 Score=87.44 Aligned_cols=49 Identities=27% Similarity=0.534 Sum_probs=43.1
Q ss_pred ccccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 290 DDLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 290 ~~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
+.+.+...|+||++...+++.+ +||| .||..|+..++. ..||+||.++.
T Consensus 17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH-~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 17 DRLEKLLRCSRCTNILREPVCLGGCEH-IFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp HHHHHTTSCSSSCSCCSSCBCCCSSSC-CBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred HhchhCCCCCCCChHhhCccEeCCCCC-HHHHHHHHHHhc---CCCcCCCCcCc
Confidence 3446778999999999999998 9999 999999999865 67999999985
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.58 E-value=2.6e-08 Score=88.52 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred ccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 292 LYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 292 ~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
.++...||||++.+.+|+.+|||| .||+.|+..++......||+||.++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Gh-tfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGI-TYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSC-EEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCCCeECCCCC-EECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457899999999999999999999 999999999998633469999998864
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=2.2e-08 Score=82.85 Aligned_cols=53 Identities=28% Similarity=0.726 Sum_probs=44.6
Q ss_pred CcceeeccccccccE-------EEcCCCCccccHHhHHHHhhcCCCCCccccccccc--eeecc
Q 036765 294 DAKLCVICYDDQRNC-------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK--VRRLF 348 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~-------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~--~~ri~ 348 (350)
+...|+||++...++ +.++||| .||..|+.+|++. ...||+||.++.. +.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH-~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSB-EEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCC-hhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence 456799999987764 7889999 9999999999887 5799999999874 56665
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=3.6e-08 Score=78.33 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=40.7
Q ss_pred cCcceeeccccccccEEEcC-CCCccccHHhHHHHhhcC-----CCCCcc--cccc
Q 036765 293 YDAKLCVICYDDQRNCFFVP-CGHCATCYDCGQRIMKDD-----SKVCPI--CRTL 340 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lp-CGH~~~C~~C~~~~~~~~-----~~~CPi--CR~~ 340 (350)
.+...||||++.+.+++.++ ||| .||+.|+..++... ...||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh-~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGH-TYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCC-EEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCC-eecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35688999999999999996 999 99999999998762 358999 9855
No 62
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.44 E-value=9.7e-08 Score=77.83 Aligned_cols=46 Identities=26% Similarity=0.566 Sum_probs=37.6
Q ss_pred cceeecccccccc------------------EEEcCCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 295 AKLCVICYDDQRN------------------CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 295 ~~~C~IC~d~~~~------------------~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
+..|.||++...+ .+.++||| .||..|+..|... ...||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H-~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSC-EEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCc-EECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4568888877553 45679999 9999999999876 678999999864
No 63
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.24 E-value=8e-07 Score=83.14 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=44.2
Q ss_pred cccCcceeeccccccccEEEc-CCCCccccHHhHHHHhhcC-CCCCcc--ccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDD-SKVCPI--CRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~-~~~CPi--CR~~I~~ 343 (350)
.......||||++.+++++.. .||| .||+.|+.+++... ...||+ ||+.+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGH-sFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNH-VFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCC-EEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCCeeeCCCCC-cccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 346778999999999999974 9999 99999999998763 357999 9998753
No 64
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=8.8e-07 Score=68.50 Aligned_cols=51 Identities=22% Similarity=0.544 Sum_probs=40.4
Q ss_pred Ccceeecccccc--ccEEEcCCC-----CccccHHhHHHHhhcC-CCCCcccccccccee
Q 036765 294 DAKLCVICYDDQ--RNCFFVPCG-----HCATCYDCGQRIMKDD-SKVCPICRTLIHKVR 345 (350)
Q Consensus 294 ~~~~C~IC~d~~--~~~v~lpCG-----H~~~C~~C~~~~~~~~-~~~CPiCR~~I~~~~ 345 (350)
++..|.||++.. .+.+++||+ | .|+.+|+.+|.... ...||+||..+....
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h-~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLH-FVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSC-CEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCC-eeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 456799999764 346678996 9 89999999998763 358999999986543
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.14 E-value=3.2e-07 Score=76.13 Aligned_cols=46 Identities=26% Similarity=0.555 Sum_probs=0.4
Q ss_pred cceeeccccccccE------------------EEcCCCCccccHHhHHHHhhcCCCCCcccccccc
Q 036765 295 AKLCVICYDDQRNC------------------FFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIH 342 (350)
Q Consensus 295 ~~~C~IC~d~~~~~------------------v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~ 342 (350)
+..|+||++...+. +.++||| .||..|+.+|... ...||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H-~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C-----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCc-eEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 45799999886542 2359999 9999999999776 578999999864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=6.1e-07 Score=70.80 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=35.9
Q ss_pred CcceeeccccccccEE---EcCCCCccccHHhHHHHhhc----C---CCCCcc--cccc
Q 036765 294 DAKLCVICYDDQRNCF---FVPCGHCATCYDCGQRIMKD----D---SKVCPI--CRTL 340 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v---~lpCGH~~~C~~C~~~~~~~----~---~~~CPi--CR~~ 340 (350)
+...|+||++...... +.+||| .||.+|+..+++. + ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH-~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQC-IFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTE-EEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCC-cccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567999999876532 348999 9999999998764 1 247999 9988
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.98 E-value=5e-06 Score=66.60 Aligned_cols=49 Identities=29% Similarity=0.682 Sum_probs=39.4
Q ss_pred eecccccccc-EEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeec
Q 036765 298 CVICYDDQRN-CFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRL 347 (350)
Q Consensus 298 C~IC~d~~~~-~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri 347 (350)
|++|--.... ...+||.| +||.+|+..+...+...||+||.+|..+.++
T Consensus 4 C~~C~~Pi~iygRmIPCkH-vFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKH-VFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp CTTTCSBCSEEEEEETTCC-EEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred cCccCCCeEEEeeeccccc-cHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 7777555444 45789999 9999999998776568899999999987654
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.95 E-value=3e-06 Score=62.07 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=41.6
Q ss_pred cceeeccccccccEEEc-CCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
...|+||++.+.|++.. +||| .||++|+.+|... ...||++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~-~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRT-IFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTE-EEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCc-EEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 36799999999999999 9999 9999999999876 4679999999864
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=0.00019 Score=54.58 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=38.5
Q ss_pred CcceeeccccccccEE-EcCCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
....|.||++....-. -..|+| .|...|+.+|++.. ...||+||+....
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h-~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGI-RMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCC-EECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccCCCCc-hhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3467999998865422 338999 99999999998763 2689999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.16 E-value=0.00023 Score=51.75 Aligned_cols=50 Identities=24% Similarity=0.544 Sum_probs=39.0
Q ss_pred CcceeeccccccccEEEcCCCCc----cccHHhHHHHhhc-CCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRNCFFVPCGHC----ATCYDCGQRIMKD-DSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpCGH~----~~C~~C~~~~~~~-~~~~CPiCR~~I~~ 343 (350)
+...|.||++...+..+.||.+. .+...|+.+|... +...||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45689999988766667898642 4889999999875 35789999998753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.67 E-value=0.00022 Score=69.02 Aligned_cols=49 Identities=20% Similarity=0.459 Sum_probs=37.8
Q ss_pred Ccceeecccccccc--------EEEcCCCCccccHHhHHHHhhcC----------CCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN--------CFFVPCGHCATCYDCGQRIMKDD----------SKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~--------~v~lpCGH~~~C~~C~~~~~~~~----------~~~CPiCR~~I~~ 343 (350)
...+|+||++...+ +--..||| .|...|+.+|.+.. .+.||.||++|..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h-~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVL-KCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCC-CBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCC-ccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 56789999987554 11347999 99999999998651 1469999999875
No 72
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.41 E-value=0.034 Score=42.60 Aligned_cols=35 Identities=29% Similarity=0.792 Sum_probs=29.9
Q ss_pred CcceeeccccccccEEEcCC----CCccccHHhHHHHhhc
Q 036765 294 DAKLCVICYDDQRNCFFVPC----GHCATCYDCGQRIMKD 329 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpC----GH~~~C~~C~~~~~~~ 329 (350)
....|.+|.+...|.-|+.| +| .||..|.....+.
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~H-kFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSH-KFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSC-EECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCC-eeeccccHHHHHh
Confidence 45789999999999888888 68 8999999887664
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=93.14 E-value=0.06 Score=42.44 Aligned_cols=52 Identities=21% Similarity=0.509 Sum_probs=41.5
Q ss_pred cCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccceeec
Q 036765 293 YDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKVRRL 347 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~~ri 347 (350)
....-|..|.-+.+..+- =..| .+|..|+..+... +..||||..++-..+++
T Consensus 26 ~G~~nCKsCWf~~k~LV~-C~dH-YLCl~CLtlmL~~-SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLVE-CNNH-YLCLNCLTLLLSV-SNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSSEEE-CSSC-EEEHHHHHHTCSS-SSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCCeee-ecch-hhHHHHHHHHHhh-ccCCcccCCcCCcceec
Confidence 345679999988886654 2358 9999999999776 68899999998877665
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.65 E-value=0.058 Score=42.21 Aligned_cols=31 Identities=26% Similarity=0.626 Sum_probs=25.3
Q ss_pred cceeeccccc-cccEEE--cCCCCccccHHhHHHH
Q 036765 295 AKLCVICYDD-QRNCFF--VPCGHCATCYDCGQRI 326 (350)
Q Consensus 295 ~~~C~IC~d~-~~~~v~--lpCGH~~~C~~C~~~~ 326 (350)
+..|.||.+. ..+++. +.|+| .||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~-~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEV-SYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTE-EECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCCh-HHhHHHCHHH
Confidence 4679999975 555555 89999 9999999984
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=90.59 E-value=0.17 Score=46.42 Aligned_cols=48 Identities=21% Similarity=0.467 Sum_probs=37.1
Q ss_pred cceeeccccccccEEEc-CCCCccccHHhHHHHhhcC-CCCCccccccccc
Q 036765 295 AKLCVICYDDQRNCFFV-PCGHCATCYDCGQRIMKDD-SKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~l-pCGH~~~C~~C~~~~~~~~-~~~CPiCR~~I~~ 343 (350)
-..|.||.+.......- .|+| .+...|+..+++.. ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~-~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGI-RMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCC-EECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccCh-HHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 46799999876554333 3999 89999999998763 3589999987653
No 76
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=73.34 E-value=2.6 Score=45.82 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=45.1
Q ss_pred cccCcceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 291 DLYDAKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 291 ~~~~~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
+.++...|||-.+-++||+.+|.||..+=+.++.+|... ...||.-|+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCc
Confidence 346789999999999999999998547899999999876 5789999998864
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=70.10 E-value=3.2 Score=32.28 Aligned_cols=50 Identities=30% Similarity=0.775 Sum_probs=35.9
Q ss_pred Ccceeecccccccc----EEEcCCCCc--cccHHhHHHHhhcCCCCCccccccccc
Q 036765 294 DAKLCVICYDDQRN----CFFVPCGHC--ATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 294 ~~~~C~IC~d~~~~----~v~lpCGH~--~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
....|.||=|...- -+|+-|..+ ..|+.|..--.......||.|.++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34789999887332 135554432 579999988877767889999988763
No 78
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=50.20 E-value=4.7 Score=36.91 Aligned_cols=58 Identities=9% Similarity=-0.142 Sum_probs=37.8
Q ss_pred ccCCceEEEEEcCCCCCccchhhhchhhHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCCC
Q 036765 186 LFPNSQYVILTTPSNGDLDGWHVEVSFAARLIIYIA---ILGFITLIIFLVSKYLGACDGNSD 245 (350)
Q Consensus 186 ~f~~~q~vv~t~~~s~~e~~~y~el~~~~r~l~yi~---~~G~~~~il~LlLrl~~~c~h~~~ 245 (350)
.||++...+..++|++.+.+.|.++...... .+. .......++.++.++++.|+||.+
T Consensus 24 ~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l 84 (271)
T 1z5z_A 24 DLPDKIETNVYCNLTPEQAAMYKAEVENLFN--NIDSVTGIKRKGMILSTLLKLKQIVDHPAL 84 (271)
T ss_dssp ----CEEEEEEECCCHHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHTTCTHH
T ss_pred hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHH--HHHhccccchHHHHHHHHHHHHHHcCCHHH
Confidence 5889999999999999999999876543211 111 111234567788899999999853
No 79
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=49.16 E-value=1.8 Score=34.16 Aligned_cols=43 Identities=28% Similarity=0.626 Sum_probs=29.2
Q ss_pred cceeeccccccccEEEcCCCCccccHHhHHHHhhcCCCCCccccccccce
Q 036765 295 AKLCVICYDDQRNCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHKV 344 (350)
Q Consensus 295 ~~~C~IC~d~~~~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~~ 344 (350)
+..||.|..+... .=|+ ..|..|...+... ..||-|.++++..
T Consensus 32 ~~~CP~Cq~eL~~----~g~~-~hC~~C~~~f~~~--a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGH-ARCRSCGEFIEMK--ALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEEE----ETTE-EEETTTCCEEEEE--EECTTTCSBCEEE
T ss_pred cccCccCCCccee----cCCE-EECccccchhhcc--ccCcchhhHHHHH
Confidence 4689999866432 1134 4588887776443 7799999888764
No 80
>2kaf_A Non-structural protein 3; SARS-unique domain-C, automation in structure determination, viral protein; NMR {Sars coronavirus}
Probab=39.57 E-value=8.9 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.3
Q ss_pred CCCccceeE----------EeecCCeeE
Q 036765 48 SYSRKGISL----------WLNKGSGIR 65 (350)
Q Consensus 48 ~~~~k~~~~----------~ln~gs~~~ 65 (350)
++|+|.|+| ||.+|.+|-
T Consensus 13 aGsy~dWsysgqrtelgveflkRGdkiv 40 (67)
T 2kaf_A 13 AGSYRDWSYSGQRTELGVEFLKRGDKIV 40 (67)
T ss_dssp HTEETTEECCCCEETTEEEEEEETTEEE
T ss_pred cccccCceeecccchhhhhhhhcCCeee
Confidence 578999998 688888763
No 81
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=38.49 E-value=17 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.663 Sum_probs=28.8
Q ss_pred ceeeccccccccEE---EcCCCCccccHHhHHHHhhcCCCCCccc
Q 036765 296 KLCVICYDDQRNCF---FVPCGHCATCYDCGQRIMKDDSKVCPIC 337 (350)
Q Consensus 296 ~~C~IC~d~~~~~v---~lpCGH~~~C~~C~~~~~~~~~~~CPiC 337 (350)
..|-.|.....+.. --.|++ .||.+|-.-+-+. -..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~-~FC~dCD~fiHe~-Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQN-VFCVDCDVFVHDS-LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTC-CBCHHHHHTTTTT-SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCc-CcccchhHHHHhh-ccCCcCC
Confidence 45888887765433 236788 8999997766443 5779998
No 82
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.58 E-value=19 Score=34.91 Aligned_cols=48 Identities=23% Similarity=0.429 Sum_probs=33.2
Q ss_pred CcceeeccccccccEE-EcCCCCccccHHhHHHH--hh-cCCCCCcccccccc
Q 036765 294 DAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRI--MK-DDSKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~--~~-~~~~~CPiCR~~I~ 342 (350)
-...||+-......++ ...|.| .-|++-..=+ .. ...-.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~H-lQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKH-LQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCS-SCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCC-cceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4578999988888865 678999 6666653332 22 23467999988764
No 83
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=35.03 E-value=0.71 Score=48.96 Aligned_cols=115 Identities=6% Similarity=-0.011 Sum_probs=61.3
Q ss_pred cchhhccccccceeeeecccccceeEeecCCCCcc-eeEEEeeechhhhHHHHhhhccCCCCCCceeEeeccCCceEEEE
Q 036765 117 LAFSFQMNKKSKIGQYDVEEDDMYYFGVTNKNPRS-ITMTMNVNVTSKIYDLTKAKNMCSSSNGSCRLKLLFPNSQYVIL 195 (350)
Q Consensus 117 ~~~~~~li~~l~i~~y~~~~~~~~~~~~~n~~~~s-i~m~l~v~v~~~l~~~mk~~~k~s~~~g~~iL~l~f~~~q~vv~ 195 (350)
....|+|++|+.-..+.....|.+.. ..... -.+ -.+...+...|.+|.|.... ..+|++...+.
T Consensus 410 l~el~~ll~fL~p~~~~~~~~~~~~~----~~~~~~~~~---~~L~~~l~p~~lRR~k~dv~-------~~LP~k~~~~v 475 (800)
T 3mwy_W 410 IKELAALVNFLMPGRFTIDQEIDFEN----QDEEQEEYI---HDLHRRIQPFILRRLKKDVE-------KSLPSKTERIL 475 (800)
T ss_dssp SHHHHHHHHHHCSCCC---------C----CTTHHHHHH---HHHHHTTGGGEEECCGGGGT-------TTSCCEEEEEE
T ss_pred HHHHHHHHHHhCccccCchhhhcccc----cchhHHHHH---HHHHHHHhHHHhhhhHHhhh-------hccCCcEEEEE
Confidence 34789999999888877665554221 11110 011 12444555566666663211 24788899999
Q ss_pred EcCCCCCccchhhhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 036765 196 TTPSNGDLDGWHVEVSFAARLIIYIAILGFITLIIFLVSKYLGACDGNSD 245 (350)
Q Consensus 196 t~~~s~~e~~~y~el~~~~r~l~yi~~~G~~~~il~LlLrl~~~c~h~~~ 245 (350)
..+++..+.++|.++........--...+....++.++.+++++|+||.+
T Consensus 476 ~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l 525 (800)
T 3mwy_W 476 RVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYL 525 (800)
T ss_dssp EECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGG
T ss_pred EeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhh
Confidence 99999888888876543211111001122234567778889999999854
No 84
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=34.99 E-value=8.6 Score=40.88 Aligned_cols=49 Identities=22% Similarity=0.574 Sum_probs=34.7
Q ss_pred cCcceeeccccccccEE-------EcCCCCcc----------------------ccHHhHHHHhhcC-------CCCCcc
Q 036765 293 YDAKLCVICYDDQRNCF-------FVPCGHCA----------------------TCYDCGQRIMKDD-------SKVCPI 336 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-------~lpCGH~~----------------------~C~~C~~~~~~~~-------~~~CPi 336 (350)
.+-..|+-|+.+..|+. |+.|-|+- +|.+|..++.+.. ..-||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 46678999998755432 66777721 6999999986641 246999
Q ss_pred ccccc
Q 036765 337 CRTLI 341 (350)
Q Consensus 337 CR~~I 341 (350)
|--.+
T Consensus 184 CGP~l 188 (772)
T 4g9i_A 184 CGPSY 188 (772)
T ss_dssp TSCCE
T ss_pred CCceE
Confidence 97554
No 85
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.53 E-value=10 Score=39.60 Aligned_cols=49 Identities=27% Similarity=0.690 Sum_probs=34.4
Q ss_pred cCcceeeccccccccEE-------EcCCCCcc----------------------ccHHhHHHHhhc-------CCCCCcc
Q 036765 293 YDAKLCVICYDDQRNCF-------FVPCGHCA----------------------TCYDCGQRIMKD-------DSKVCPI 336 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-------~lpCGH~~----------------------~C~~C~~~~~~~-------~~~~CPi 336 (350)
.+--.|+-|+.+..|+. |+.|-|+- +|.+|..++.+. ...-||.
T Consensus 15 pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~ 94 (657)
T 3ttc_A 15 PDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPE 94 (657)
T ss_dssp CCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCcc
Confidence 35578999998755432 66777721 699999998664 1246999
Q ss_pred ccccc
Q 036765 337 CRTLI 341 (350)
Q Consensus 337 CR~~I 341 (350)
|--.+
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 96655
No 86
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=32.39 E-value=25 Score=33.94 Aligned_cols=48 Identities=19% Similarity=0.449 Sum_probs=33.4
Q ss_pred CcceeeccccccccEE-EcCCCCccccHHhHHHHh--h-cCCCCCcccccccc
Q 036765 294 DAKLCVICYDDQRNCF-FVPCGHCATCYDCGQRIM--K-DDSKVCPICRTLIH 342 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v-~lpCGH~~~C~~C~~~~~--~-~~~~~CPiCR~~I~ 342 (350)
-...||+-......++ ...|.| .-|++-..=+. . .+.-.||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~H-lqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTH-LQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCC-CCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCC-CccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 3467999988888865 678999 66666543332 2 13457999998764
No 87
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=31.83 E-value=14 Score=39.18 Aligned_cols=49 Identities=20% Similarity=0.587 Sum_probs=34.4
Q ss_pred cCcceeeccccccccEE-------EcCCCCcc----------------------ccHHhHHHHhhc-------CCCCCcc
Q 036765 293 YDAKLCVICYDDQRNCF-------FVPCGHCA----------------------TCYDCGQRIMKD-------DSKVCPI 336 (350)
Q Consensus 293 ~~~~~C~IC~d~~~~~v-------~lpCGH~~----------------------~C~~C~~~~~~~-------~~~~CPi 336 (350)
.+-..|+-|+.+..|+. |+.|-|+- +|.+|..++.+. ...-||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 45678999998755432 56777732 699999998664 1245999
Q ss_pred ccccc
Q 036765 337 CRTLI 341 (350)
Q Consensus 337 CR~~I 341 (350)
|--.+
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 96554
No 88
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.91 E-value=9.3 Score=36.13 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=32.4
Q ss_pred CcceeeccccccccEEEc----CCCC-ccccHHhHHHHhhcCCCCCcccccc
Q 036765 294 DAKLCVICYDDQRNCFFV----PCGH-CATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~l----pCGH-~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
....||+|=..+.-.++. .=|+ ...|.-|...|.-. ..+||.|...
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 457899998877655443 2342 26899999987443 5789999875
No 89
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=28.42 E-value=27 Score=25.54 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=24.9
Q ss_pred CcceeeccccccccEEEcCC-CCccccHHhHHHHh
Q 036765 294 DAKLCVICYDDQRNCFFVPC-GHCATCYDCGQRIM 327 (350)
Q Consensus 294 ~~~~C~IC~d~~~~~v~lpC-GH~~~C~~C~~~~~ 327 (350)
+..-|.||.+. ....-+.| |- .+|..|...+-
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgD-LYC~rC~rE~H 39 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGD-LYCARCFREGH 39 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSE-EECSSHHHHHT
T ss_pred CCCeeEEeCCC-CeEEecCCCCc-eehHHHHHHHc
Confidence 44669999887 44666799 66 89999998874
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.23 E-value=6.9 Score=33.28 Aligned_cols=45 Identities=18% Similarity=0.482 Sum_probs=28.7
Q ss_pred cceeeccccccc-----cEEEcCCCCccccHHhHHHHhhcCCCCCcccccc
Q 036765 295 AKLCVICYDDQR-----NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTL 340 (350)
Q Consensus 295 ~~~C~IC~d~~~-----~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~ 340 (350)
+..|.+|..... -..-..|.| .+|..|.........=.|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~-~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSL-FVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCC-EECGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCc-hhhcccccccCCCCcEeeHHHHHH
Confidence 467999998743 244567888 899999743211112348888654
No 91
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.07 E-value=11 Score=27.11 Aligned_cols=24 Identities=42% Similarity=0.881 Sum_probs=14.9
Q ss_pred cCcceeeccccc-cccEEEcCCCCccccHHh
Q 036765 293 YDAKLCVICYDD-QRNCFFVPCGHCATCYDC 322 (350)
Q Consensus 293 ~~~~~C~IC~d~-~~~~v~lpCGH~~~C~~C 322 (350)
.+...|.||+.. +.| .||| .|..|
T Consensus 7 ~d~~~C~iC~KTKFAD----G~Gh--~C~yC 31 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD----GCGH--NCSYC 31 (62)
T ss_dssp SCCCCCSSSSCSCCCS----SCCE--EBTTT
T ss_pred CCcchhhhhccceecc----CCCc--ccccc
Confidence 356789999854 333 5677 35555
No 92
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=22.07 E-value=18 Score=22.89 Aligned_cols=13 Identities=15% Similarity=0.519 Sum_probs=8.7
Q ss_pred Ccceeeccccccc
Q 036765 294 DAKLCVICYDDQR 306 (350)
Q Consensus 294 ~~~~C~IC~d~~~ 306 (350)
+.+.||+|+....
T Consensus 4 EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 4 EGFICPQCMKSLG 16 (34)
T ss_dssp EEEECTTTCCEES
T ss_pred cccCCcHHHHHcC
Confidence 4578888876544
No 93
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.40 E-value=9.6 Score=29.05 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=4.9
Q ss_pred Cccccccccc
Q 036765 334 CPICRTLIHK 343 (350)
Q Consensus 334 CPiCR~~I~~ 343 (350)
|+.|..-|.+
T Consensus 54 C~~C~~LiSk 63 (81)
T 2jrp_A 54 CQNGHGLISK 63 (81)
T ss_dssp CTTTTCCCCT
T ss_pred eccCCCEeec
Confidence 4555544444
No 94
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=42 Score=26.49 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=34.2
Q ss_pred cceeeccccccc---cEEEcCCCCccccHHhHHHHhhcCCCCCccccccccc
Q 036765 295 AKLCVICYDDQR---NCFFVPCGHCATCYDCGQRIMKDDSKVCPICRTLIHK 343 (350)
Q Consensus 295 ~~~C~IC~d~~~---~~v~lpCGH~~~C~~C~~~~~~~~~~~CPiCR~~I~~ 343 (350)
-+.|..|..... ...+..=|. .+|..|..+.... ...|..|..+|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~-~yC~~cy~~~f~~-~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGM-ILCRNDYIRLFGN-SGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTE-EECHHHHHHHHCC-CCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEEECCe-eecHHHHHHHcCC-CCccccCCCCcCc
Confidence 367888877664 234555677 8999999887543 3489999999985
Done!