BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036766
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 131/230 (56%), Positives = 172/230 (74%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
E+RVPMTRLRKRVA RL +++N+ AMLTTFNEV+M +M LR +Y +AF ++HG++LG M
Sbjct: 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFM 63
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADI 360
S +VKA V L+ P +NA S+AV T +GLV PV+R+ D + ADI
Sbjct: 64 SFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI 123
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
EK+I LA K DG ++++++ GG+FTI+NGGV+GSL+STPIINPPQSAILGMH+I RP
Sbjct: 124 EKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRP 183
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
M V G V PMMY+AL+YDHRLIDGRE+V FL IK+++E+P RLLLD+
Sbjct: 184 MAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 136/234 (58%), Gaps = 6/234 (2%)
Query: 237 PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVK 296
P+ RE+ M+ +R+ +A + S++T +T +E D+T L+ R ++K EK G+K
Sbjct: 13 PETREK---MSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIK 68
Query: 297 LGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADK 354
L + VKA VS L+ P++N +I A T +GL+VPVI++AD+
Sbjct: 69 LTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADR 128
Query: 355 MNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMH 414
+ +EIN LA+KA DG ++ EM G S TI+N G G TP+IN P+ AILG+
Sbjct: 129 KPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIG 188
Query: 415 SIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
I ++P+V G +V PM+ ++L++DHR+IDG A L IK ++ +P LL+
Sbjct: 189 RIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 3/231 (1%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
E R M+ +R+ +A + S++T +T +E D+T L+ R ++K EK G+KL +
Sbjct: 198 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEK-GIKLTFL 256
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVG--TSKGLVVPVIRNADKMNFA 358
VKA VS L+ P++N +I + T +GL+VPVI++AD+
Sbjct: 257 PYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIF 316
Query: 359 DIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418
+ +EIN LA+KA DG ++ EM G S TI+N G G TP+IN P+ AILG+ I +
Sbjct: 317 ALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAE 376
Query: 419 RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLD 469
+P+V G +V PM+ ++L++DHR+IDG A L IK ++ +P LL++
Sbjct: 377 KPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLME 427
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
+P +GE I +G + K+ PGD V D+ + +++ DK +++ SP G + E++ EG
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66
Query: 163 VEPGTKIAVISKSG 176
G + + G
Sbjct: 67 ATVGQTLITLDAPG 80
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/222 (35%), Positives = 127/222 (57%)
Query: 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLM 300
++ +P+ +RK +A + S+ EVD T L++ R+ KD+F ++ G L
Sbjct: 18 DKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYF 77
Query: 301 SGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADI 360
+ F+KA L+ P +N+ SIA+ L VPVI+NAD+ + I
Sbjct: 78 AFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGI 137
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
+EI+ LA KA +G +S +M GG+FT+++ G +GS+ S IIN PQ+AIL + SIV+RP
Sbjct: 138 AREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRP 197
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE 462
+++ + R M+ + L+ DHR++DG A FL+ IK VE+
Sbjct: 198 VIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEK 239
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
VPMTRL + AT L S +T F D+T L R K A EK GVKL ++
Sbjct: 18 VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
+KA L+ P N+ I AV T GL+VPVIRN D+ + +
Sbjct: 77 LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
E LA+KA + D M G FTIS+ G G TPI+N P+ AILG+ +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
G PR M+ ++L+YDHR+IDG A F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVIDGAAAARFTKRLGDLLADIRAILL 243
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 15/233 (6%)
Query: 240 RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299
RE + M LR+ + ++ ++ T EVD+T+++ + K K+ +
Sbjct: 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKVTV 59
Query: 300 MSGFVKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNF 357
+ S L+ P +NA+ +I AV T GL V VI++AD+ +
Sbjct: 60 TGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSM 119
Query: 358 ADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIV 417
+I EI+ A +A + + +DE+ +FTI+N G G ++STPIIN P+ AILG+H I+
Sbjct: 120 VEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRIL 179
Query: 418 QRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
+R R MY++L+ DHRLIDG A F+ +K V+E+P ++ +I
Sbjct: 180 ERE--------GRKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIYEI 224
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
VPMTRL + AT L S +T F D+T L R K A EK GVKL ++
Sbjct: 18 VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
+KA L+ P N+ I AV T GL+VPVIRN D+ + +
Sbjct: 77 LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
E LA+KA + D M G FTI++ G G TPI+N P+ AILG+ +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
G PR M+ ++L+YDHR+I+G A F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
VPMTRL + AT L S +T F D+T L R K A +K GVKL ++
Sbjct: 18 VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAKKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
+KA L+ P N+ I AV T GL+VPVIRN D+ + +
Sbjct: 77 LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
E LA+KA + D M G FTIS+ G G TPI+N P+ AILG+ +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
G PR M+ ++L+YDHR+I+G A F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 9/230 (3%)
Query: 245 PMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFV 304
P+ + R+A ++ S EV L++LR + A E L L
Sbjct: 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTL----- 72
Query: 305 KAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVG----TSKGLVVPVIRNADKMNFADI 360
+ V L++ I+N+ + +G T +GL+VPV+ +A N ++
Sbjct: 73 RLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTREL 132
Query: 361 EKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRP 420
+ L A +G+++ E+ G +FT+SN G G P+IN P++AILG+ +I RP
Sbjct: 133 ASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRP 192
Query: 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470
+VVGG VV RP M + +DHR++DG + F+ ++D++E P LLD+
Sbjct: 193 VVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL 242
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 115/227 (50%), Gaps = 3/227 (1%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
VPMTRL + AT L S +T F D+T L R K A EK GVKL ++
Sbjct: 18 VPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK-AVAEKAGVKLTVLPLL 76
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSI--AVGTSKGLVVPVIRNADKMNFADIE 361
+KA L+ P N+ I AV T GL+VPVIRN D+ + +
Sbjct: 77 LKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLA 136
Query: 362 KEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPM 421
E LA+KA + D M G FTIS+ G G TPI+N P+ AILG+ +P+
Sbjct: 137 AEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPV 196
Query: 422 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
G PR M+ ++L+YD R+I+G A F +R+ D++ + R +LL
Sbjct: 197 WDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 107/203 (52%), Gaps = 4/203 (1%)
Query: 271 NEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVXXXXXXXXXX 330
+EVD+T L+KLR E K + G+KL M F+KAA GL PI+NA
Sbjct: 60 DEVDLTELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118
Query: 331 XXXXSI--AVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTI 388
+I A+ T +GL+VP ++N + +I E+N L K + G +S +++ GG+FT+
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL 178
Query: 389 SNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMV-VGGNVVPRPMMYIALTYDHRLIDGR 447
SN G G + P+I PP+ AI + +I P G V +M ++ + DHR+IDG
Sbjct: 179 SNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGA 238
Query: 448 EAVFFLRRIKDVVEEPRRLLLDI 470
F K +E P +LLD+
Sbjct: 239 TVSRFSNLWKSYLENPAFMLLDL 261
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 8/229 (3%)
Query: 244 VPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303
+P++ +R+ +A RL S+ T +V+M ++ +R E + LE K+ +
Sbjct: 15 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKEL-NKILEGRS-KISVNDFI 72
Query: 304 VKAAVSGLQNQPIINAVXXXXXXXXXXXXXXSIAVGTSKGLVVPVIRNADKMNFADIEKE 363
+KA+ P N+ S+AV T GL+ P++ NA I +
Sbjct: 73 IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 364 INTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHS----IVQR 419
+ +LA KA +G + E GG+FTISN G++G + IINPPQ+ IL + + +V
Sbjct: 133 VVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA 192
Query: 420 PMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468
G +V MM + L+ DHR++DG +L + +E+P +LL
Sbjct: 193 DNEKGFDVA--SMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
+D P ESI DGT+A + K PG+ V+ DE I IETDKV ++V + GVI E+V
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 159 EGETVEPGTKIAVISKSG 176
EG+TV G + +++ G
Sbjct: 62 EGDTVLSGELLGKLTEGG 79
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLST 400
++ LVV I+ + M F + ++A DG ++ ++ +G + +++N G G++ S
Sbjct: 94 NRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSV 153
Query: 401 PIINPPQSAILGMHSIVQRPMVVGGNVVPR-------PMMYIALTYDHRLIDGREAVFFL 453
P + Q AI+G ++ + P G R ++ + TYDHR+I G E+ FL
Sbjct: 154 PRLMQGQGAIIGAGAM-EYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFL 212
Query: 454 RRIKDVVEEPRRLLLD 469
R I +LLLD
Sbjct: 213 RTI-------HQLLLD 221
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%)
Query: 99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
VD +VP + ES+ D T+A + K PGD V DE + +IETDKV ++V + G++ ++
Sbjct: 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 159 EGETV 163
EG TV
Sbjct: 63 EGTTV 67
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
+P +GE I +G + K+ PGD V D+ + +++ DK +++ SP G + E++ EG
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65
Query: 163 VEPGTKIAVISKSG 176
G + + G
Sbjct: 66 ATVGQTLITLDAPG 79
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL 155
GD + ++P + ++ +G + K+LK G+ V + + +IETDK + + + + G++ ++
Sbjct: 1 GDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKI 60
Query: 156 VAKEG-ETVEPGTKIAVISKSGEGVAHV 182
V +EG + + G+ I +I + GE HV
Sbjct: 61 VVEEGSKNIRLGSLIGLIVEEGEDWKHV 88
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
+P +GE +T+G + ++ GD VE D+ + ++ TDKVT+ + SP G I +++ +EG+
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65
Query: 163 VEPGTKIAVIS 173
V G+ + I
Sbjct: 66 VPVGSTLLQID 76
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 93 SEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVI 152
S G + ++P + ++ +G + K+LK G+ V + + +IETDK + + + + G++
Sbjct: 2 SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61
Query: 153 KELVAKEG-ETVEPGTKIAVISKSGEGVAHV 182
++V +EG + + G+ I +I + GE HV
Sbjct: 62 AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHV 92
>pdb|3U9S|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|C Chain C, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|E Chain E, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|G Chain G, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|I Chain I, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9S|K Chain K, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Coa Complex
pdb|3U9T|A Chain A, Crystal Structure Of P. Aeruginosa 3-methylcrotonyl-coa
Carboxylase (mcc) 750 Kd Holoenzyme, Free Enzyme
Length = 655
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171
+G++ + L PG VE + +E K+ + +P AGV+K L EGE VE GT +
Sbjct: 590 NGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVE 649
Query: 172 ISKS 175
+ ++
Sbjct: 650 LDEN 653
>pdb|1IYU|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr,
Minimized Average Structure
pdb|1IYV|A Chain A, Lipoyl Domain Of Pyruvate Dehydrogenase Complex, Nmr, 29
Structures
Length = 79
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162
VP +G DG + + L GD +E+++ + +E+ K +++V SP+AGV+K + K G+
Sbjct: 6 VPDIG---GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62
Query: 163 VEPGTKI 169
++ G I
Sbjct: 63 LKEGDAI 69
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 103 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG 160
+P + ++ GT+A++ K GD++ + IA++ETDK T+ S E + +++ EG
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 102 VVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161
++P + ++T GT+ ++ K G+++ + +A+IETDK TI E G + +++ EG
Sbjct: 31 LLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 90
Query: 162 TVEP-GTKIAVI 172
P GT + +I
Sbjct: 91 RDVPLGTPLCII 102
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 102 VVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161
++P + ++T GT+ ++ K G+++ + +A+IETDK TI E G + +++ EG
Sbjct: 13 LLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT 72
Query: 162 TVEP-GTKIAVI 172
P GT + +I
Sbjct: 73 RDVPLGTPLCII 84
>pdb|2K7V|A Chain A, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
pdb|2K7V|B Chain B, Deletions In A Surface Loop Divert The Folding Of A
Protein Domain Into A Metastable Dimeric Form
Length = 85
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176
GD+V ++ + +E DK +++V +P AGV+KEL G+ V+ G+ I + G
Sbjct: 21 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 74
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176
GD+V ++ + +E DK +++V +P AGV+KEL G+ V+ G+ I + G
Sbjct: 25 GDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPG 166
G + + L GDRV + + + +E K+ ++ SP GV+K ++ KEGE V+ G
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTG 67
>pdb|1Z6H|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form
pdb|1Z7T|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo-Form
pdb|2B8F|A Chain A, Solution Structure Of Bacillus Subtilis Blap Apo Form
(Energy Minimized Mean Structure)
pdb|2B8G|A Chain A, Solution Structure Of Bacillus Subtilis Blap Biotinylated-
Form (Energy Minimized Mean Structure)
Length = 72
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
G L K GD++E + +A +E+ K+ I + + +G++KE+ KEG+ V G + +
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLEL 67
Query: 173 SKS 175
S S
Sbjct: 68 SNS 70
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 102 VVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161
++P + ++T GT+ ++ K G+++ + +A+IETD TI E G + +++ EG
Sbjct: 9 LLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGT 68
Query: 162 TVEP-GTKIAVI 172
P GT + +I
Sbjct: 69 RDVPLGTPLCII 80
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL 155
G +V + +GE I + T+ ++ GD V + I ++++DK ++ + S GVIK+L
Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|3OQO|A Chain A, Ccpa-Hpr-Ser46p-Syn Cre
pdb|3OQO|C Chain C, Ccpa-Hpr-Ser46p-Syn Cre
Length = 339
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 53 IRNFSHLIFPGCSKGCQPLRDV----ISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGE 108
I + S + + ++G + + + I + NM H ++ G VD +V FMG
Sbjct: 67 IPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIV-FMGG 125
Query: 109 SITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
+ITD +A+F + P V Q ET V ID +K LV K
Sbjct: 126 NITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDK 175
>pdb|3OQM|A Chain A, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQM|C Chain C, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQN|A Chain A, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
pdb|3OQN|C Chain C, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
Length = 339
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 53 IRNFSHLIFPGCSKGCQPLRDV----ISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGE 108
I + S + + ++G + + + I + NM H ++ G VD +V FMG
Sbjct: 67 IPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIV-FMGG 125
Query: 109 SITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
+ITD +A+F + P V Q ET V ID +K LV K
Sbjct: 126 NITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDK 175
>pdb|3VA7|A Chain A, Crystal Structure Of The Kluyveromyces Lactis Urea
Carboxylase
Length = 1236
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172
G K + GD VE + + IE K + V + ++G + +++ K G+ VE G +AVI
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>pdb|2FEP|A Chain A, Structure Of Truncated Ccpa In Complex With P-Ser-Hpr And
Sulfate Ions
Length = 289
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 53 IRNFSHLIFPGCSKGCQPLRDV----ISSTQKATNMYLWSHPFSSEGGDLVDAVVPFMGE 108
I + S + + ++G + + + I + NM H ++ G VD +V FMG
Sbjct: 23 IPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIV-FMGG 81
Query: 109 SITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158
+ITD +A+F + P V Q ET V ID +K LV K
Sbjct: 82 NITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVDK 131
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1119 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1171
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1096 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1119 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1171
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1096 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1096 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1119 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1171
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175
G+ V+ ++P+ E K+ + +P GVIK++ G+T+ G + I K+
Sbjct: 1119 GETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,751,894
Number of Sequences: 62578
Number of extensions: 443000
Number of successful extensions: 1335
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 50
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)