Query 036766
Match_columns 470
No_of_seqs 296 out of 2120
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:17:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02226 2-oxoglutarate dehydr 100.0 1.1E-88 2.5E-93 707.5 43.4 459 1-470 2-463 (463)
2 KOG0559 Dihydrolipoamide succi 100.0 6.7E-85 1.4E-89 638.8 28.0 371 98-470 72-457 (457)
3 PTZ00144 dihydrolipoamide succ 100.0 1.8E-82 4E-87 657.0 42.4 376 91-470 37-418 (418)
4 PRK05704 dihydrolipoamide succ 100.0 1.2E-80 2.6E-85 646.4 42.9 374 97-470 1-407 (407)
5 TIGR01347 sucB 2-oxoglutarate 100.0 4.5E-80 9.7E-85 640.9 42.9 372 99-470 1-403 (403)
6 PLN02744 dihydrolipoyllysine-r 100.0 7.9E-79 1.7E-83 645.6 41.7 385 84-468 96-539 (539)
7 COG0508 AceF Pyruvate/2-oxoglu 100.0 3E-77 6.5E-82 620.4 37.8 372 97-469 1-404 (404)
8 PLN02528 2-oxoisovalerate dehy 100.0 1.1E-75 2.4E-80 611.3 41.7 368 101-470 1-415 (416)
9 TIGR02927 SucB_Actino 2-oxoglu 100.0 1.2E-75 2.7E-80 634.4 41.6 370 96-465 133-584 (590)
10 TIGR01349 PDHac_trf_mito pyruv 100.0 3.6E-75 7.9E-80 610.5 40.5 366 101-468 2-435 (435)
11 TIGR01348 PDHac_trf_long pyruv 100.0 6.2E-75 1.3E-79 624.5 41.2 369 98-468 116-546 (546)
12 PRK11854 aceF pyruvate dehydro 100.0 6.3E-72 1.4E-76 611.3 43.4 371 96-468 204-633 (633)
13 PRK11856 branched-chain alpha- 100.0 3.1E-70 6.7E-75 572.4 42.0 368 97-469 1-411 (411)
14 PRK11855 dihydrolipoamide acet 100.0 2.2E-70 4.9E-75 591.2 41.4 371 96-468 117-547 (547)
15 KOG0557 Dihydrolipoamide acety 100.0 5.6E-71 1.2E-75 560.4 29.1 372 94-468 34-470 (470)
16 KOG0558 Dihydrolipoamide trans 100.0 1.2E-66 2.6E-71 507.9 24.1 371 97-470 63-473 (474)
17 PF00198 2-oxoacid_dh: 2-oxoac 100.0 4.5E-62 9.8E-67 472.8 26.3 229 239-468 2-231 (231)
18 PRK14843 dihydrolipoamide acet 100.0 3.4E-61 7.4E-66 490.5 25.9 228 241-468 118-347 (347)
19 PRK11857 dihydrolipoamide acet 100.0 1.9E-60 4.2E-65 477.5 26.2 228 241-468 76-305 (306)
20 PRK12270 kgd alpha-ketoglutara 100.0 2.5E-50 5.5E-55 436.6 28.2 220 241-461 115-349 (1228)
21 PRK13757 chloramphenicol acety 99.9 4.1E-25 9E-30 211.8 22.2 180 265-462 31-214 (219)
22 PF00302 CAT: Chloramphenicol 99.9 1.1E-24 2.3E-29 207.7 21.2 178 262-457 23-206 (206)
23 COG4845 Chloramphenicol O-acet 99.8 1.4E-19 3E-24 167.3 18.1 187 262-466 26-217 (219)
24 PF00364 Biotin_lipoyl: Biotin 99.8 2.1E-18 4.6E-23 138.4 7.8 74 99-172 1-74 (74)
25 PRK14875 acetoin dehydrogenase 99.7 7.8E-17 1.7E-21 164.9 11.6 79 98-176 2-80 (371)
26 PRK11892 pyruvate dehydrogenas 99.7 1.1E-15 2.4E-20 161.9 19.7 81 98-178 2-83 (464)
27 PRK06748 hypothetical protein; 99.7 4.6E-16 9.9E-21 126.7 9.6 63 112-174 12-75 (83)
28 PRK05889 putative acetyl-CoA c 99.6 2.2E-14 4.7E-19 114.2 9.2 63 111-173 9-71 (71)
29 cd06663 Biotinyl_lipoyl_domain 99.5 9.3E-14 2E-18 110.7 9.4 72 101-172 2-73 (73)
30 PRK11854 aceF pyruvate dehydro 99.5 2.4E-13 5.2E-18 150.0 12.4 76 98-175 2-77 (633)
31 COG0511 AccB Biotin carboxyl c 99.5 1.4E-13 3E-18 123.8 8.2 63 111-173 77-139 (140)
32 PRK08225 acetyl-CoA carboxylas 99.5 3.5E-13 7.5E-18 106.8 8.8 62 112-173 9-70 (70)
33 TIGR02927 SucB_Actino 2-oxoglu 99.4 3E-13 6.6E-18 147.8 10.7 78 98-175 2-79 (590)
34 PRK11855 dihydrolipoamide acet 99.4 3E-12 6.5E-17 139.2 11.8 79 98-177 2-80 (547)
35 PRK06549 acetyl-CoA carboxylas 99.3 3.5E-12 7.5E-17 112.9 9.2 62 111-172 68-129 (130)
36 PRK05641 putative acetyl-CoA c 99.3 9.2E-12 2E-16 113.3 8.8 62 111-172 91-152 (153)
37 PRK07051 hypothetical protein; 99.3 1.9E-11 4.1E-16 99.6 9.6 69 99-173 4-79 (80)
38 TIGR01348 PDHac_trf_long pyruv 99.3 1E-11 2.2E-16 134.8 10.1 76 100-176 2-77 (546)
39 cd06850 biotinyl_domain The bi 99.2 4.3E-11 9.4E-16 92.7 9.0 62 111-172 6-67 (67)
40 PLN02983 biotin carboxyl carri 99.2 2.2E-11 4.9E-16 118.0 8.4 62 112-173 205-273 (274)
41 TIGR00531 BCCP acetyl-CoA carb 99.2 4.3E-11 9.4E-16 109.6 8.0 62 112-173 88-156 (156)
42 cd06849 lipoyl_domain Lipoyl d 99.2 2.5E-10 5.4E-15 88.4 10.7 73 100-172 2-74 (74)
43 PRK06302 acetyl-CoA carboxylas 99.1 1.1E-10 2.5E-15 106.7 8.2 61 113-173 88-155 (155)
44 PRK14042 pyruvate carboxylase 99.1 1.4E-10 3E-15 126.3 9.5 63 112-174 533-595 (596)
45 TIGR02712 urea_carbox urea car 99.0 5.7E-10 1.2E-14 130.7 9.2 63 111-173 1139-1201(1201)
46 TIGR01108 oadA oxaloacetate de 99.0 9.8E-10 2.1E-14 119.9 7.7 59 111-169 524-582 (582)
47 PRK14040 oxaloacetate decarbox 98.9 2E-09 4.3E-14 117.7 9.2 63 111-173 531-593 (593)
48 TIGR01235 pyruv_carbox pyruvat 98.9 2.1E-09 4.6E-14 125.0 8.8 63 111-173 1081-1143(1143)
49 PRK09282 pyruvate carboxylase 98.8 8.7E-09 1.9E-13 112.8 8.9 63 111-173 529-591 (592)
50 COG4770 Acetyl/propionyl-CoA c 98.8 1.8E-08 3.9E-13 106.4 8.1 62 112-173 583-644 (645)
51 PRK12999 pyruvate carboxylase; 98.7 2.5E-08 5.3E-13 116.6 9.0 62 112-173 1084-1145(1146)
52 COG1038 PycA Pyruvate carboxyl 98.6 8.8E-08 1.9E-12 104.3 7.9 62 112-173 1087-1148(1149)
53 KOG0369 Pyruvate carboxylase [ 98.3 1E-06 2.2E-11 94.5 6.6 62 112-173 1114-1175(1176)
54 cd06848 GCS_H Glycine cleavage 98.2 2.8E-06 6.1E-11 71.5 5.9 64 98-162 15-79 (96)
55 KOG0368 Acetyl-CoA carboxylase 98.1 5.1E-06 1.1E-10 95.3 7.2 66 111-177 692-757 (2196)
56 KOG0238 3-Methylcrotonyl-CoA c 98.0 6.1E-06 1.3E-10 86.4 4.5 62 112-173 609-670 (670)
57 TIGR03077 not_gcvH glycine cle 97.8 3.1E-05 6.6E-10 66.9 5.8 61 99-160 17-78 (110)
58 PRK09783 copper/silver efflux 97.8 8.4E-05 1.8E-09 78.5 9.3 67 111-177 130-245 (409)
59 PRK00624 glycine cleavage syst 97.8 5.6E-05 1.2E-09 65.6 6.1 58 98-156 18-76 (114)
60 TIGR00998 8a0101 efflux pump m 97.7 7.8E-05 1.7E-09 76.0 8.0 36 142-177 205-240 (334)
61 PRK13380 glycine cleavage syst 97.7 5.2E-05 1.1E-09 68.6 5.4 62 98-160 30-92 (144)
62 PRK10559 p-hydroxybenzoic acid 97.7 0.00013 2.9E-09 74.1 8.4 67 111-177 54-190 (310)
63 TIGR01730 RND_mfp RND family e 97.6 9E-05 1.9E-09 74.6 6.7 67 111-177 33-170 (322)
64 PRK01202 glycine cleavage syst 97.6 0.00018 3.9E-09 63.8 7.3 77 99-176 24-108 (127)
65 PRK10476 multidrug resistance 97.6 0.00017 3.7E-09 74.2 8.0 36 142-177 209-244 (346)
66 PRK15136 multidrug efflux syst 97.4 0.00035 7.5E-09 73.4 7.5 36 142-177 216-251 (390)
67 PRK03598 putative efflux pump 97.4 0.00032 7E-09 71.7 7.0 35 142-176 204-238 (331)
68 PRK09578 periplasmic multidrug 97.4 0.00036 7.7E-09 73.0 7.4 67 111-177 70-209 (385)
69 PF13533 Biotin_lipoyl_2: Biot 97.4 0.00026 5.6E-09 52.3 4.2 36 141-176 2-37 (50)
70 PRK09859 multidrug efflux syst 97.3 0.00068 1.5E-08 70.9 7.6 67 111-177 68-207 (385)
71 PRK15030 multidrug efflux syst 97.3 0.00072 1.6E-08 71.1 7.9 67 111-177 72-211 (397)
72 TIGR00527 gcvH glycine cleavag 97.2 0.00049 1.1E-08 61.0 4.6 59 99-158 23-82 (127)
73 PRK12784 hypothetical protein; 97.1 0.0026 5.6E-08 50.7 7.7 65 111-175 12-77 (84)
74 PF13533 Biotin_lipoyl_2: Biot 97.1 0.00053 1.1E-08 50.7 3.5 30 111-140 9-38 (50)
75 PRK11556 multidrug efflux syst 97.1 0.0011 2.4E-08 70.2 6.9 66 111-176 94-232 (415)
76 PRK11578 macrolide transporter 97.0 0.0015 3.2E-08 68.0 7.3 67 111-177 68-222 (370)
77 PF12700 HlyD_2: HlyD family s 96.9 0.00086 1.9E-08 67.7 4.3 66 111-177 28-195 (328)
78 PF01597 GCV_H: Glycine cleava 96.8 0.0025 5.4E-08 56.1 5.8 44 113-156 31-75 (122)
79 TIGR02971 heterocyst_DevB ABC 96.8 0.0031 6.8E-08 64.2 7.2 33 143-176 206-238 (327)
80 TIGR03309 matur_yqeB selenium- 96.7 0.0051 1.1E-07 60.4 8.0 58 115-177 174-231 (256)
81 PRK05889 putative acetyl-CoA c 96.6 0.0045 9.6E-08 49.0 5.1 34 143-176 4-37 (71)
82 COG0509 GcvH Glycine cleavage 96.2 0.0057 1.2E-07 54.1 3.9 58 98-156 25-83 (131)
83 PRK06748 hypothetical protein; 96.0 0.011 2.3E-07 48.5 4.7 32 143-174 6-37 (83)
84 TIGR00999 8a0102 Membrane Fusi 95.9 0.016 3.6E-07 56.8 6.5 35 142-176 89-123 (265)
85 TIGR01843 type_I_hlyD type I s 95.8 0.026 5.6E-07 59.1 8.0 34 143-176 273-307 (423)
86 PF13375 RnfC_N: RnfC Barrel s 95.7 0.019 4.2E-07 48.8 5.0 44 112-156 38-81 (101)
87 PRK08225 acetyl-CoA carboxylas 95.5 0.03 6.6E-07 43.9 5.2 34 143-176 3-36 (70)
88 cd06850 biotinyl_domain The bi 95.3 0.026 5.6E-07 43.0 4.3 32 144-175 2-33 (67)
89 cd06253 M14_ASTE_ASPA_like_3 A 95.3 0.054 1.2E-06 54.9 7.7 58 113-172 237-297 (298)
90 COG0511 AccB Biotin carboxyl c 95.2 0.028 6.1E-07 50.7 4.7 36 140-175 69-104 (140)
91 cd06251 M14_ASTE_ASPA_like_1 A 95.0 0.092 2E-06 52.9 8.2 58 113-172 227-286 (287)
92 COG1566 EmrA Multidrug resista 94.9 0.096 2.1E-06 54.2 8.3 36 142-177 209-244 (352)
93 cd06250 M14_PaAOTO_like An unc 94.8 0.09 1.9E-06 54.7 7.7 59 112-172 296-358 (359)
94 cd06252 M14_ASTE_ASPA_like_2 A 94.7 0.12 2.5E-06 52.9 8.4 60 112-173 251-314 (316)
95 TIGR02994 ectoine_eutE ectoine 94.4 0.13 2.9E-06 52.8 7.8 58 113-172 263-324 (325)
96 PF13437 HlyD_3: HlyD family s 94.1 0.077 1.7E-06 44.6 4.6 34 143-176 1-34 (105)
97 PRK06549 acetyl-CoA carboxylas 94.0 0.096 2.1E-06 46.6 5.0 37 140-176 60-96 (130)
98 PF00364 Biotin_lipoyl: Biotin 93.8 0.086 1.9E-06 42.0 4.0 35 143-177 2-42 (74)
99 PRK05641 putative acetyl-CoA c 93.5 0.12 2.7E-06 47.2 5.0 36 141-176 84-119 (153)
100 COG3608 Predicted deacylase [G 93.4 0.14 3.1E-06 52.3 5.8 61 112-174 263-326 (331)
101 TIGR01235 pyruv_carbox pyruvat 93.3 0.26 5.7E-06 58.6 8.6 81 95-176 1019-1109(1143)
102 cd06254 M14_ASTE_ASPA_like_4 A 93.3 0.2 4.2E-06 50.5 6.6 56 112-169 230-287 (288)
103 PF00529 HlyD: HlyD family sec 93.2 0.072 1.6E-06 53.1 3.2 35 142-176 2-36 (305)
104 PRK10476 multidrug resistance 93.0 0.12 2.7E-06 53.1 4.8 41 133-175 42-82 (346)
105 PF05896 NQRA: Na(+)-transloca 92.9 0.17 3.6E-06 50.1 5.2 42 113-157 38-81 (257)
106 PF09891 DUF2118: Uncharacteri 92.8 0.15 3.2E-06 46.5 4.4 46 111-156 87-133 (150)
107 TIGR00998 8a0101 efflux pump m 92.7 0.12 2.6E-06 52.6 4.1 36 141-176 42-77 (334)
108 TIGR02971 heterocyst_DevB ABC 92.6 0.16 3.4E-06 51.8 4.9 43 134-176 6-51 (327)
109 PRK07051 hypothetical protein; 92.5 0.19 4.1E-06 40.6 4.2 36 141-176 3-45 (80)
110 PF07247 AATase: Alcohol acety 91.9 3.9 8.4E-05 43.8 14.7 174 270-460 253-480 (480)
111 PRK11556 multidrug efflux syst 91.8 0.27 5.9E-06 52.1 5.6 59 117-176 64-122 (415)
112 TIGR02946 acyl_WS_DGAT acyltra 91.6 2.8 6.1E-05 44.3 13.1 164 269-462 232-441 (446)
113 TIGR01000 bacteriocin_acc bact 91.3 0.29 6.3E-06 52.5 5.3 42 135-176 53-94 (457)
114 PRK11578 macrolide transporter 91.2 0.43 9.3E-06 49.6 6.3 57 118-175 39-95 (370)
115 TIGR01936 nqrA NADH:ubiquinone 91.1 0.24 5.2E-06 53.0 4.3 43 113-156 38-80 (447)
116 PRK09859 multidrug efflux syst 91.1 0.35 7.6E-06 50.6 5.5 55 120-175 41-95 (385)
117 TIGR01730 RND_mfp RND family e 91.1 0.31 6.8E-06 48.9 5.0 35 141-175 26-60 (322)
118 TIGR03794 NHPM_micro_HlyD NHPM 91.0 0.32 6.8E-06 51.6 5.1 39 138-176 55-93 (421)
119 TIGR01843 type_I_hlyD type I s 90.8 0.34 7.3E-06 50.7 5.1 43 134-176 36-78 (423)
120 PRK10559 p-hydroxybenzoic acid 90.6 0.26 5.7E-06 50.1 3.9 35 142-176 48-82 (310)
121 PRK15136 multidrug efflux syst 90.5 0.27 5.8E-06 51.7 4.1 36 141-176 61-96 (390)
122 PF12700 HlyD_2: HlyD family s 90.5 0.22 4.8E-06 50.1 3.3 41 133-176 15-55 (328)
123 PF00529 HlyD: HlyD family sec 90.0 0.21 4.5E-06 49.8 2.5 32 111-142 8-39 (305)
124 PRK14042 pyruvate carboxylase 89.9 1.2 2.6E-05 49.4 8.6 34 143-176 527-560 (596)
125 PRK09578 periplasmic multidrug 89.9 0.51 1.1E-05 49.3 5.5 55 120-175 43-97 (385)
126 PRK03598 putative efflux pump 89.8 0.38 8.1E-06 49.2 4.4 35 141-175 43-77 (331)
127 PRK05352 Na(+)-translocating N 89.4 0.55 1.2E-05 50.3 5.4 43 113-156 39-81 (448)
128 PRK15030 multidrug efflux syst 87.8 0.56 1.2E-05 49.3 4.1 43 133-176 58-100 (397)
129 PF07831 PYNP_C: Pyrimidine nu 87.5 0.57 1.2E-05 37.6 3.0 30 110-139 28-57 (75)
130 PLN02983 biotin carboxyl carri 87.5 0.76 1.6E-05 45.5 4.4 36 142-177 198-240 (274)
131 TIGR01945 rnfC electron transp 87.2 0.66 1.4E-05 49.6 4.2 43 113-156 40-82 (435)
132 COG1726 NqrA Na+-transporting 87.1 0.73 1.6E-05 47.3 4.2 54 117-173 42-95 (447)
133 PRK05035 electron transport co 86.3 1.2 2.6E-05 50.3 5.9 43 113-156 46-88 (695)
134 TIGR00531 BCCP acetyl-CoA carb 86.2 0.72 1.6E-05 42.4 3.4 27 110-136 130-156 (156)
135 PRK09439 PTS system glucose-sp 86.0 1.6 3.5E-05 40.6 5.6 19 156-174 107-125 (169)
136 PRK09783 copper/silver efflux 85.8 1.3 2.9E-05 46.8 5.6 47 130-176 111-159 (409)
137 cd06255 M14_ASTE_ASPA_like_5 A 85.4 2.3 4.9E-05 43.0 6.9 43 113-155 239-283 (293)
138 cd00210 PTS_IIA_glc PTS_IIA, P 85.4 2.1 4.5E-05 37.9 5.7 21 154-174 83-103 (124)
139 PRK06302 acetyl-CoA carboxylas 85.3 0.88 1.9E-05 41.7 3.5 26 111-136 130-155 (155)
140 KOG0559 Dihydrolipoamide succi 85.3 7.8 0.00017 40.1 10.4 28 111-138 122-149 (457)
141 PRK09282 pyruvate carboxylase 85.2 2.2 4.9E-05 47.4 7.2 36 141-176 522-557 (592)
142 PRK14040 oxaloacetate decarbox 84.8 2.1 4.5E-05 47.6 6.7 36 141-176 524-559 (593)
143 PF00358 PTS_EIIA_1: phosphoen 84.7 1.7 3.6E-05 38.9 4.8 19 156-174 89-107 (132)
144 PF04952 AstE_AspA: Succinylgl 84.6 2.5 5.4E-05 42.2 6.7 61 112-174 227-291 (292)
145 PF00668 Condensation: Condens 84.6 12 0.00026 36.1 11.4 32 433-464 129-160 (301)
146 TIGR01108 oadA oxaloacetate de 84.5 1.3 2.8E-05 49.1 4.9 36 142-177 518-553 (582)
147 TIGR00830 PTBA PTS system, glu 84.0 2.5 5.4E-05 37.2 5.6 21 154-174 83-103 (121)
148 COG0845 AcrA Membrane-fusion p 83.9 2.5 5.3E-05 42.3 6.4 44 131-175 57-100 (372)
149 COG4072 Uncharacterized protei 83.7 2.2 4.8E-05 38.0 5.0 45 111-155 98-143 (161)
150 PLN02226 2-oxoglutarate dehydr 82.9 1.3 2.9E-05 47.5 4.1 28 111-138 141-168 (463)
151 PF13437 HlyD_3: HlyD family s 82.6 1.7 3.8E-05 36.2 4.0 28 111-138 6-33 (105)
152 PRK14875 acetoin dehydrogenase 82.6 2.2 4.7E-05 43.4 5.4 29 111-139 52-80 (371)
153 PF02749 QRPTase_N: Quinolinat 82.6 1.1 2.5E-05 36.8 2.7 24 114-137 45-68 (88)
154 COG2190 NagE Phosphotransferas 82.5 2.6 5.5E-05 38.7 5.2 21 154-174 90-110 (156)
155 TIGR00164 PS_decarb_rel phosph 82.2 2.4 5.2E-05 40.1 5.1 53 113-170 130-182 (189)
156 TIGR03794 NHPM_micro_HlyD NHPM 81.7 1.8 3.9E-05 45.8 4.6 34 142-175 254-287 (421)
157 TIGR01000 bacteriocin_acc bact 81.6 1.2 2.7E-05 47.7 3.3 30 111-140 66-95 (457)
158 COG4656 RnfC Predicted NADH:ub 81.4 1.3 2.9E-05 47.7 3.4 39 116-156 45-83 (529)
159 PRK12784 hypothetical protein; 81.3 1.9 4.2E-05 34.7 3.4 39 139-177 2-41 (84)
160 PRK05305 phosphatidylserine de 81.0 2.8 6E-05 40.2 5.2 55 112-171 149-204 (206)
161 KOG3373 Glycine cleavage syste 80.6 1.2 2.7E-05 40.7 2.4 39 120-158 88-126 (172)
162 COG2190 NagE Phosphotransferas 80.6 3.7 8E-05 37.7 5.5 61 112-172 85-153 (156)
163 PRK09294 acyltransferase PapA5 80.5 38 0.00082 35.5 14.0 91 296-396 229-347 (416)
164 COG4770 Acetyl/propionyl-CoA c 80.4 2 4.3E-05 46.8 4.2 34 142-175 576-609 (645)
165 COG0508 AceF Pyruvate/2-oxoglu 80.3 1.8 4E-05 45.8 4.0 31 147-177 14-44 (404)
166 cd06663 Biotinyl_lipoyl_domain 78.0 3.8 8.3E-05 31.9 4.3 29 148-176 12-40 (73)
167 TIGR02712 urea_carbox urea car 77.9 2.8 6E-05 50.5 4.9 37 140-176 1131-1167(1201)
168 COG0845 AcrA Membrane-fusion p 77.5 2.1 4.5E-05 42.9 3.3 27 111-137 73-99 (372)
169 COG1566 EmrA Multidrug resista 77.3 2.6 5.5E-05 43.8 3.9 36 141-176 53-88 (352)
170 PRK09439 PTS system glucose-sp 76.9 5.5 0.00012 37.1 5.6 28 112-139 100-127 (169)
171 PTZ00144 dihydrolipoamide succ 76.5 2.8 6.1E-05 44.5 4.0 30 147-176 56-85 (418)
172 cd00210 PTS_IIA_glc PTS_IIA, P 75.9 2.4 5.2E-05 37.5 2.8 28 112-139 78-105 (124)
173 TIGR00830 PTBA PTS system, glu 75.2 2.5 5.4E-05 37.2 2.7 28 112-139 78-105 (121)
174 TIGR01995 PTS-II-ABC-beta PTS 74.7 3.7 8E-05 45.9 4.5 28 112-139 542-569 (610)
175 PF02666 PS_Dcarbxylase: Phosp 74.3 4.5 9.7E-05 38.5 4.4 68 101-171 134-202 (202)
176 PRK05704 dihydrolipoamide succ 72.9 4.3 9.3E-05 43.1 4.3 30 110-139 51-80 (407)
177 TIGR01347 sucB 2-oxoglutarate 72.4 4.5 9.7E-05 42.9 4.3 29 110-138 49-77 (403)
178 cd06849 lipoyl_domain Lipoyl d 72.2 7 0.00015 28.9 4.3 31 146-176 11-41 (74)
179 PRK10255 PTS system N-acetyl g 71.9 8.1 0.00018 43.4 6.3 43 129-174 526-603 (648)
180 COG1038 PycA Pyruvate carboxyl 71.5 8.3 0.00018 43.9 6.2 32 144-175 1082-1113(1149)
181 PRK12999 pyruvate carboxylase; 71.1 4.8 0.00011 48.2 4.6 36 141-176 1076-1111(1146)
182 PLN02528 2-oxoisovalerate dehy 69.6 5.8 0.00013 42.2 4.4 30 110-139 47-76 (416)
183 PRK09824 PTS system beta-gluco 69.4 6.8 0.00015 43.9 5.1 28 112-139 558-585 (627)
184 TIGR01995 PTS-II-ABC-beta PTS 67.7 12 0.00025 42.0 6.5 61 111-175 469-568 (610)
185 PF00358 PTS_EIIA_1: phosphoen 67.7 3.2 7E-05 37.1 1.7 29 112-140 82-110 (132)
186 PRK09824 PTS system beta-gluco 66.8 11 0.00024 42.3 6.0 61 111-175 485-584 (627)
187 PRK03934 phosphatidylserine de 65.1 12 0.00025 37.4 5.3 56 113-172 210-265 (265)
188 PF06898 YqfD: Putative stage 62.9 11 0.00025 39.6 5.0 55 111-172 166-227 (385)
189 KOG0368 Acetyl-CoA carboxylase 62.7 16 0.00035 44.3 6.4 79 96-174 633-718 (2196)
190 TIGR03309 matur_yqeB selenium- 62.4 8.5 0.00019 38.1 3.7 33 141-174 164-196 (256)
191 TIGR01349 PDHac_trf_mito pyruv 61.8 10 0.00022 40.6 4.5 29 111-139 49-78 (435)
192 PRK10255 PTS system N-acetyl g 61.5 9.9 0.00022 42.7 4.5 29 112-140 578-606 (648)
193 TIGR02645 ARCH_P_rylase putati 61.3 14 0.00031 40.0 5.4 45 133-177 405-473 (493)
194 KOG0369 Pyruvate carboxylase [ 60.9 7.1 0.00015 43.5 3.0 33 143-175 1108-1140(1176)
195 KOG0557 Dihydrolipoamide acety 57.9 9.7 0.00021 40.6 3.4 31 147-177 50-80 (470)
196 PRK14844 bifunctional DNA-dire 57.7 17 0.00038 46.6 5.9 20 117-136 2423-2442(2836)
197 PRK03140 phosphatidylserine de 57.6 11 0.00024 37.4 3.7 51 120-171 207-257 (259)
198 COG0157 NadC Nicotinate-nucleo 57.4 9.8 0.00021 38.2 3.1 25 114-138 64-88 (280)
199 cd06910 M14_ASTE_ASPA_like_7 A 55.8 17 0.00038 36.2 4.7 45 120-171 226-271 (272)
200 PRK11892 pyruvate dehydrogenas 55.5 14 0.00031 39.8 4.3 29 110-138 51-80 (464)
201 cd06255 M14_ASTE_ASPA_like_5 A 55.4 18 0.00039 36.5 4.8 36 141-177 231-266 (293)
202 cd01134 V_A-ATPase_A V/A-type 53.2 29 0.00063 36.3 5.9 56 119-176 54-112 (369)
203 KOG0238 3-Methylcrotonyl-CoA c 52.5 13 0.00028 40.3 3.3 33 143-175 603-635 (670)
204 COG3608 Predicted deacylase [G 52.1 25 0.00054 36.2 5.2 35 141-176 256-290 (331)
205 PF02458 Transferase: Transfer 51.6 18 0.00038 37.9 4.2 31 433-463 147-177 (432)
206 PLN02744 dihydrolipoyllysine-r 51.4 17 0.00038 39.9 4.2 30 147-176 124-153 (539)
207 cd06253 M14_ASTE_ASPA_like_3 A 51.2 18 0.00039 36.6 4.1 34 141-175 229-262 (298)
208 PRK04350 thymidine phosphoryla 51.2 26 0.00056 38.1 5.3 44 134-177 398-465 (490)
209 cd06250 M14_PaAOTO_like An unc 51.1 23 0.00049 37.0 4.8 35 142-177 290-324 (359)
210 PLN00140 alcohol acetyltransfe 50.7 17 0.00037 38.8 4.0 30 433-462 148-177 (444)
211 cd06251 M14_ASTE_ASPA_like_1 A 50.4 30 0.00064 34.8 5.4 36 141-177 219-254 (287)
212 PRK11856 branched-chain alpha- 50.4 18 0.0004 38.2 4.1 30 111-140 52-81 (411)
213 TIGR02876 spore_yqfD sporulati 50.2 31 0.00066 36.4 5.6 54 112-171 163-223 (382)
214 PLN02663 hydroxycinnamoyl-CoA: 49.9 18 0.00038 38.3 3.9 30 433-462 145-174 (431)
215 PF13375 RnfC_N: RnfC Barrel s 49.9 25 0.00054 29.8 4.1 49 125-174 14-63 (101)
216 TIGR03327 AMP_phos AMP phospho 49.7 27 0.00058 38.0 5.2 43 135-177 408-474 (500)
217 PRK08072 nicotinate-nucleotide 49.7 17 0.00036 36.6 3.4 21 116-136 66-86 (277)
218 TIGR01042 V-ATPase_V1_A V-type 49.2 32 0.00069 38.2 5.7 54 119-174 123-179 (591)
219 TIGR02643 T_phosphoryl thymidi 48.8 28 0.0006 37.3 5.1 40 137-176 335-405 (437)
220 TIGR02644 Y_phosphoryl pyrimid 48.5 29 0.00064 36.8 5.2 42 135-176 327-399 (405)
221 cd06254 M14_ASTE_ASPA_like_4 A 47.5 24 0.00053 35.4 4.3 36 140-176 222-257 (288)
222 PF07831 PYNP_C: Pyrimidine nu 47.1 25 0.00053 28.2 3.4 30 147-178 30-59 (75)
223 cd01572 QPRTase Quinolinate ph 46.9 20 0.00044 35.7 3.6 24 113-136 57-80 (268)
224 PF01551 Peptidase_M23: Peptid 46.7 58 0.0013 26.5 5.8 58 110-176 19-76 (96)
225 PF07247 AATase: Alcohol acety 46.7 21 0.00045 38.2 3.9 33 432-464 140-172 (480)
226 PRK05820 deoA thymidine phosph 46.6 32 0.00069 37.0 5.1 40 137-176 336-406 (440)
227 PLN02481 Omega-hydroxypalmitat 46.4 22 0.00048 37.7 4.0 30 433-462 158-187 (436)
228 TIGR02994 ectoine_eutE ectoine 46.1 26 0.00056 36.0 4.3 34 141-175 255-288 (325)
229 cd06252 M14_ASTE_ASPA_like_2 A 45.7 36 0.00078 34.7 5.2 36 140-176 243-278 (316)
230 PRK06543 nicotinate-nucleotide 45.7 21 0.00045 36.0 3.4 22 115-136 66-87 (281)
231 PRK05742 nicotinate-nucleotide 45.0 21 0.00046 35.8 3.4 22 116-137 68-89 (277)
232 PRK06096 molybdenum transport 44.9 21 0.00046 36.0 3.4 21 116-136 63-83 (284)
233 PF05896 NQRA: Na(+)-transloca 43.9 15 0.00033 36.5 2.1 30 143-172 31-60 (257)
234 cd01573 modD_like ModD; Quinol 43.4 23 0.0005 35.5 3.3 22 115-136 57-78 (272)
235 PRK06078 pyrimidine-nucleoside 43.3 35 0.00077 36.5 4.9 40 135-174 329-399 (434)
236 TIGR00163 PS_decarb phosphatid 43.2 21 0.00046 34.9 3.0 48 123-171 189-236 (238)
237 PRK09016 quinolinate phosphori 43.1 23 0.00051 35.9 3.3 21 116-136 87-107 (296)
238 PRK02597 rpoC2 DNA-directed RN 42.7 59 0.0013 39.6 7.0 56 118-173 405-507 (1331)
239 COG4908 Uncharacterized protei 42.5 4.6E+02 0.0099 28.1 13.0 84 269-370 218-318 (439)
240 PRK06978 nicotinate-nucleotide 42.3 25 0.00053 35.7 3.3 21 116-136 84-104 (294)
241 PRK07428 nicotinate-nucleotide 42.1 25 0.00054 35.6 3.3 23 115-137 73-95 (288)
242 cd01568 QPRTase_NadC Quinolina 41.9 26 0.00056 35.0 3.4 25 113-137 56-80 (269)
243 PRK05820 deoA thymidine phosph 41.7 20 0.00044 38.4 2.8 31 108-138 375-405 (440)
244 PRK05848 nicotinate-nucleotide 41.5 26 0.00056 35.2 3.3 21 116-136 60-80 (273)
245 PLN03157 spermidine hydroxycin 41.2 29 0.00063 37.0 3.9 30 433-462 146-175 (447)
246 PRK06106 nicotinate-nucleotide 41.1 27 0.00058 35.2 3.4 23 114-136 70-92 (281)
247 PRK07896 nicotinate-nucleotide 41.0 26 0.00057 35.4 3.3 22 115-136 77-98 (289)
248 PLN02716 nicotinate-nucleotide 40.9 27 0.00059 35.7 3.4 24 114-137 78-101 (308)
249 PF02749 QRPTase_N: Quinolinat 40.7 49 0.0011 27.0 4.4 23 153-175 47-69 (88)
250 TIGR02643 T_phosphoryl thymidi 40.0 23 0.0005 37.9 2.9 30 108-137 374-403 (437)
251 PRK06078 pyrimidine-nucleoside 39.9 24 0.00052 37.8 3.0 30 110-139 372-401 (434)
252 PF01551 Peptidase_M23: Peptid 39.8 24 0.00051 28.9 2.4 26 113-138 50-75 (96)
253 TIGR02645 ARCH_P_rylase putati 39.5 26 0.00056 38.1 3.1 33 106-138 439-471 (493)
254 TIGR00078 nadC nicotinate-nucl 38.9 31 0.00067 34.4 3.4 21 116-136 56-76 (265)
255 PRK00044 psd phosphatidylserin 38.5 29 0.00062 35.1 3.2 58 114-173 224-286 (288)
256 PRK04350 thymidine phosphoryla 38.2 28 0.00061 37.8 3.2 33 106-138 431-463 (490)
257 COG4072 Uncharacterized protei 38.1 68 0.0015 28.8 5.0 33 146-178 96-128 (161)
258 TIGR01334 modD putative molybd 38.0 32 0.00069 34.6 3.4 21 116-136 62-82 (277)
259 PRK08385 nicotinate-nucleotide 37.9 32 0.00069 34.7 3.3 21 116-136 60-80 (278)
260 PRK04192 V-type ATP synthase s 37.9 68 0.0015 35.7 6.1 57 119-177 123-182 (586)
261 COG1155 NtpA Archaeal/vacuolar 37.8 76 0.0017 34.8 6.3 70 101-177 105-180 (588)
262 TIGR03327 AMP_phos AMP phospho 37.0 29 0.00063 37.8 3.1 34 105-138 439-472 (500)
263 TIGR02644 Y_phosphoryl pyrimid 36.3 33 0.00072 36.4 3.3 29 110-138 370-398 (405)
264 PRK10871 nlpD lipoprotein NlpD 34.9 98 0.0021 31.8 6.3 25 152-176 269-293 (319)
265 PRK14698 V-type ATP synthase s 34.6 72 0.0016 38.0 6.0 69 101-177 107-182 (1017)
266 PF01333 Apocytochr_F_C: Apocy 33.3 34 0.00074 29.8 2.3 50 111-170 9-61 (118)
267 PF09891 DUF2118: Uncharacteri 32.6 63 0.0014 29.6 4.0 42 125-177 75-116 (150)
268 TIGR01043 ATP_syn_A_arch ATP s 31.7 92 0.002 34.7 5.9 55 120-176 121-178 (578)
269 TIGR00999 8a0102 Membrane Fusi 31.3 65 0.0014 31.2 4.4 31 100-136 90-120 (265)
270 PF06898 YqfD: Putative stage 31.0 53 0.0012 34.5 3.8 23 111-133 196-225 (385)
271 COG0213 DeoA Thymidine phospho 30.6 86 0.0019 33.4 5.2 44 134-177 329-403 (435)
272 TIGR00164 PS_decarb_rel phosph 29.7 1.6E+02 0.0035 27.7 6.5 64 112-176 80-155 (189)
273 PRK10252 entF enterobactin syn 27.7 5.1E+02 0.011 31.3 11.9 160 238-461 2-161 (1296)
274 PRK10871 nlpD lipoprotein NlpD 27.3 34 0.00074 35.1 1.6 21 117-137 271-291 (319)
275 CHL00117 rpoC2 RNA polymerase 27.1 78 0.0017 38.8 4.7 37 117-153 405-449 (1364)
276 PRK08662 nicotinate phosphorib 27.0 59 0.0013 33.7 3.3 25 112-138 69-93 (343)
277 PRK06559 nicotinate-nucleotide 26.9 61 0.0013 32.8 3.3 22 115-136 72-95 (290)
278 PTZ00403 phosphatidylserine de 26.2 63 0.0014 33.7 3.3 57 115-174 283-340 (353)
279 COG0213 DeoA Thymidine phospho 25.2 69 0.0015 34.1 3.4 28 110-137 373-400 (435)
280 cd06848 GCS_H Glycine cleavage 24.5 87 0.0019 25.9 3.3 31 147-177 26-57 (96)
281 PRK02259 aspartoacylase; Provi 24.2 38 0.00082 34.1 1.2 53 117-172 229-283 (288)
282 TIGR02876 spore_yqfD sporulati 23.8 94 0.002 32.7 4.1 24 111-134 193-223 (382)
283 PRK07188 nicotinate phosphorib 22.4 86 0.0019 32.7 3.5 23 115-137 72-94 (352)
284 PRK05305 phosphatidylserine de 22.1 2.2E+02 0.0047 27.2 6.0 64 111-175 98-174 (206)
285 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 21.1 62 0.0013 25.8 1.7 51 118-170 2-62 (86)
286 KOG1668 Elongation factor 1 be 20.9 54 0.0012 32.0 1.5 27 117-143 181-207 (231)
287 PF03869 Arc: Arc-like DNA bin 20.6 2.9E+02 0.0062 20.2 5.0 48 262-318 2-49 (50)
288 COG0157 NadC Nicotinate-nucleo 20.2 1.3E+02 0.0028 30.4 4.0 23 154-176 67-89 (280)
No 1
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=1.1e-88 Score=707.55 Aligned_cols=459 Identities=72% Similarity=1.085 Sum_probs=360.2
Q ss_pred CcceeEeeeecCCCCccccccccccccccccceeeccccccceeeeccCcccccccceeecCCCccCCCCccchhhcccc
Q 036766 1 MLGVIRRRVASGGSPASILGHSLQTMRPAMSVSRVSSIAGKETLLHSRGLGHIRNFSHLIFPGCSKGCQPLRDVISSTQK 80 (470)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (470)
|+-.+-||-.+.|||+||.+.++|.-|-+.+..+..+ |.+..-+.-.-.|.-+|-.....+...+|++... -
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (463)
T PLN02226 2 MLRAVIRRASTRGSSPSLFGKSLQSSRVAASSPSLLS--GSETGALLHRGNHAHSFHNLALPGNSGISRSASL------V 73 (463)
T ss_pred cHHHHHHhhccCCCChhhhhhhhhhchhhccCccccc--ccccchhhhccccccchhhcccCCccccCCchhh------h
Confidence 3444445667889999999999998876522222111 1112222222225557777777777777775443 2
Q ss_pred ccccccccccccCCCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766 81 ATNMYLWSHPFSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG 160 (470)
Q Consensus 81 ~~~~~~~~r~~~~~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG 160 (470)
...-+.|-|.|....+.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eG 153 (463)
T PLN02226 74 SSTLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEG 153 (463)
T ss_pred hhhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCC
Confidence 23345688889987776799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCeEEEEeeCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCccccccCCCCC--CCCCCCCCC-CCCCCCCC
Q 036766 161 ETVEPGTKIAVISKSGEGVAHVAPSEKIPEKAAPKPPSAEKAKEDKPQPKVETVSEKPKA--PSPPPPKRT-ATEPQLPP 237 (470)
Q Consensus 161 ~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~-~~~~~~~~ 237 (470)
|.|++|++|++|+..+++.+........+...++. +.. +...+....+..+|...+. .+.+...+. ...+..+.
T Consensus 154 d~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~v~asp~~r~~~~~~~~~~~~~~~~~~~~~~ 230 (463)
T PLN02226 154 DTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPK-PSP--PAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP 230 (463)
T ss_pred CEecCCCEEEEeccCCccccccCccCCCCCCCCCC-CCC--ccccccccCCCcchhhccccCCCCCCCCcccccCccccc
Confidence 99999999999975433211100000000000000 000 0000000111111111110 000000000 00011101
Q ss_pred CCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCcc
Q 036766 238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPII 317 (470)
Q Consensus 238 ~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~l 317 (470)
....+.+||++|||.||++|.+|++++||||++.|+|+|+|+++|+++++.+.+++|.|+||++||+||+++||++||++
T Consensus 231 ~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~l 310 (463)
T PLN02226 231 KERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVV 310 (463)
T ss_pred CCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHh
Confidence 11245689999999999999999999999999999999999999999998776667899999999999999999999999
Q ss_pred ceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766 318 NAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL 397 (470)
Q Consensus 318 N~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~ 397 (470)
|+.|+++.|+++++||||+||++++||++|||++++++++.||++++++|++++|+|+|+++|++||||||||+|++|++
T Consensus 311 Na~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~ 390 (463)
T PLN02226 311 NAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSL 390 (463)
T ss_pred heEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766 398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470 (470)
Q Consensus 398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~ 470 (470)
+|+|||||||+||||+|++.++|++.||++++|++|+|||+||||+|||+++|+||++|+++||+|+.||+++
T Consensus 391 ~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~~ 463 (463)
T PLN02226 391 ISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 463 (463)
T ss_pred ceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=6.7e-85 Score=638.82 Aligned_cols=371 Identities=63% Similarity=1.009 Sum_probs=316.0
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.+++..|.++|+++||.|.+|++++||.|+++|.||+|||||.+++|.||.+|+|.++++++||+|.+|+.|+.|.....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA 151 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA 151 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred CCCC--CCCCCCCCCC----CCCCCCCcccccCCCCCCccccccCCCCCCCCC---CCCCCCCCCCCCC------CCccc
Q 036766 178 GVAH--VAPSEKIPEK----AAPKPPSAEKAKEDKPQPKVETVSEKPKAPSPP---PPKRTATEPQLPP------KERER 242 (470)
Q Consensus 178 ~~~~--~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~------~~~~~ 242 (470)
.+.. .+|+..++.. +++.+++...+. ....|..+..+ ++....++ +...+...+.+++ ...++
T Consensus 152 pa~~~~~apa~~~pk~~~a~~a~p~~~s~~~p-~~~apv~e~p~-~p~~~~P~~~~a~k~~v~~~~~~p~~~~~~~R~E~ 229 (457)
T KOG0559|consen 152 PAKGGASAPAKAEPKTAPAAAAPPKPSSKPPP-KEAAPVAESPP-APSSPEPVPASAKKPSVAQPKPPPSEGATPSRSER 229 (457)
T ss_pred CccccccCCCccCCCCCCCCCCCCCccCCCCc-cccCCCCCCCC-CCCCCCCCCccccCccccCCCCCcccccCCCcchh
Confidence 3222 2332222211 111111100000 01111111111 01000000 0011112222222 23488
Q ss_pred eeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe
Q 036766 243 RVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID 322 (470)
Q Consensus 243 ~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~ 322 (470)
+++|++||++||+||++|+++.+.+|.+.||||++|+++|++|+++|.+++|+|+.|+.+|+||++.||++.|.+|+.||
T Consensus 230 RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavId 309 (457)
T KOG0559|consen 230 RVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVID 309 (457)
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccc
Q 036766 323 GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPI 402 (470)
Q Consensus 323 ~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpi 402 (470)
|++|+|+|++||++||+++.||++|||||++.|+|.||..+|..|..|||+|+|..+||.||||||||-|.||..+.|||
T Consensus 310 g~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPI 389 (457)
T KOG0559|consen 310 GDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPI 389 (457)
T ss_pred CCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766 403 INPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470 (470)
Q Consensus 403 i~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~ 470 (470)
|||||+||||+++|.++|++++|++++|+||++.||||||+|||.+|.-||+.+|+++|||..|||++
T Consensus 390 INpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VEDP~~mll~l 457 (457)
T KOG0559|consen 390 INPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLLDL 457 (457)
T ss_pred cCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 3
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.8e-82 Score=656.95 Aligned_cols=376 Identities=53% Similarity=0.870 Sum_probs=308.9
Q ss_pred ccCCCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEE
Q 036766 91 FSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIA 170 (470)
Q Consensus 91 ~~~~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~ 170 (470)
|+..+..+.+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+
T Consensus 37 ~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~ 116 (418)
T PTZ00144 37 FSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLS 116 (418)
T ss_pred cccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEE
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCC-CCCC-C-cccccCCCCC-CccccccCCCCCCCCCCCCCCCCCCCC-C-CCCcccee
Q 036766 171 VISKSGEGVAHVAPSEKIPEKAA-PKPP-S-AEKAKEDKPQ-PKVETVSEKPKAPSPPPPKRTATEPQL-P-PKERERRV 244 (470)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~a-~~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~ 244 (470)
+|+..++..... ..+..++.++ +.+. . ...+...+.. .....+|...+..+++.+ ++.+.. + .....+.+
T Consensus 117 ~I~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~vr~~~~~~~~---~~~~~~~~~~~~~~~~i 192 (418)
T PTZ00144 117 EIDTGGAPPAAA-PAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA---KPPPTPVARADPRETRV 192 (418)
T ss_pred EEcCCCcccccc-ccccCCCCCccCCCCCCCCCCCccccccccccCCchhhhccccCCCC---CCCCCCccccCCCceee
Confidence 997654321110 0000000000 0000 0 0000000000 000001110000000000 000100 0 01113458
Q ss_pred echhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCC
Q 036766 245 PMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD 324 (470)
Q Consensus 245 pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~ 324 (470)
||++|||+||++|++|++++||||++.++|+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++|+++
T Consensus 193 pls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~ 272 (418)
T PTZ00144 193 PMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGD 272 (418)
T ss_pred eCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCC
Confidence 99999999999999999999999999999999999999999977666678999999999999999999999999999999
Q ss_pred eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccC
Q 036766 325 DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIIN 404 (470)
Q Consensus 325 ~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~ 404 (470)
++++++++|||+||++++||++|||++++++++.||++++++|++++|+|+|+++|++||||||||+|++|+++|+||||
T Consensus 273 ~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIIn 352 (418)
T PTZ00144 273 EIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIIN 352 (418)
T ss_pred EEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhccC
Q 036766 405 PPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLLDI 470 (470)
Q Consensus 405 ~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll~~ 470 (470)
|||+||||+|++.++|++.+|++++|++|+|||+||||+|||++||+||++|+++||+|+.||+++
T Consensus 353 pPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll~~ 418 (418)
T PTZ00144 353 PPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLLDL 418 (418)
T ss_pred CCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998874
No 4
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.2e-80 Score=646.38 Aligned_cols=374 Identities=53% Similarity=0.850 Sum_probs=308.0
Q ss_pred ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
|.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|++|+.++
T Consensus 1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CCCCCC-CCCCCCCCCC--CCCCCCcccc-cCCCCCCccccccC------------CC-------CC----CC---CCCC
Q 036766 177 EGVAHV-APSEKIPEKA--APKPPSAEKA-KEDKPQPKVETVSE------------KP-------KA----PS---PPPP 226 (470)
Q Consensus 177 ~~~~~~-~~~~~~~~~~--a~~~~~~~~~-~~~~~~~~~~~~~~------------~~-------~~----~a---~~~~ 226 (470)
+..... ++....+..+ ++.++.+... ......|.+++... .+ +. .. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~ 160 (407)
T PRK05704 81 AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPAA 160 (407)
T ss_pred cccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCCC
Confidence 322111 0000000000 0000000000 00112333332100 00 00 00 0000
Q ss_pred CCCCC-C--CCCCCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHH
Q 036766 227 KRTAT-E--PQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGF 303 (470)
Q Consensus 227 ~~~~~-~--~~~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~l 303 (470)
..... . +........+.+||+++||+||++|++|++++||||++.++|+|+|+++|+++++.+.++.|.|+||++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls~~~~l 240 (407)
T PRK05704 161 PAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMSFF 240 (407)
T ss_pred CCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcCHHHHH
Confidence 00000 0 00001112456899999999999999999999999999999999999999999987766678999999999
Q ss_pred HHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCC
Q 036766 304 VKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAG 383 (470)
Q Consensus 304 vkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~g 383 (470)
+||+++||++||+||++|+++++++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++|
T Consensus 241 ikA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~g 320 (407)
T PRK05704 241 VKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTG 320 (407)
T ss_pred HHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 036766 384 GSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEP 463 (470)
Q Consensus 384 gtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P 463 (470)
|||||||+|++|+.+|+|||||||+||||+|++.++|++.+|++.+|++|+|||+||||+|||++||+||++|+++||||
T Consensus 321 gTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p 400 (407)
T PRK05704 321 GTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDP 400 (407)
T ss_pred ceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC
Q 036766 464 RRLLLDI 470 (470)
Q Consensus 464 ~~lll~~ 470 (470)
+.||+++
T Consensus 401 ~~ll~~~ 407 (407)
T PRK05704 401 ERLLLDL 407 (407)
T ss_pred HHHhhcC
Confidence 9999875
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=4.5e-80 Score=640.91 Aligned_cols=372 Identities=54% Similarity=0.858 Sum_probs=305.9
Q ss_pred EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCCC
Q 036766 99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~ 178 (470)
++|+||+||++|++|+|++|+|++||.|++||+|++|||||++++++||++|+|.++++++|+.|++|++|++|+.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred CCCC-CCCCCCCCC--CCCCCCCccccc-CCCCCCccccccC------------CC-------CC----CC---CCCCCC
Q 036766 179 VAHV-APSEKIPEK--AAPKPPSAEKAK-EDKPQPKVETVSE------------KP-------KA----PS---PPPPKR 228 (470)
Q Consensus 179 ~~~~-~~~~~~~~~--~a~~~~~~~~~~-~~~~~~~~~~~~~------------~~-------~~----~a---~~~~~~ 228 (470)
.... ++...++.. +++.++.+.... ....+|.+++... .+ +. .. ++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 160 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASAQAPAP 160 (403)
T ss_pred cccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccccCCCCC
Confidence 1100 000000000 000000000000 0011233332100 00 00 00 000000
Q ss_pred CCCCCCCC-CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHH
Q 036766 229 TATEPQLP-PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAA 307 (470)
Q Consensus 229 ~~~~~~~~-~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~ 307 (470)
..+.+... .....+.+||+++||+||++|++|++++|||+++.++|+|+|+++|+++++.+.++.|.++||++||+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~ 240 (403)
T TIGR01347 161 AAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMSFFVKAV 240 (403)
T ss_pred CcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHHHHHHHH
Confidence 00000000 01123568999999999999999999999999999999999999999999877666789999999999999
Q ss_pred HHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEE
Q 036766 308 VSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFT 387 (470)
Q Consensus 308 a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtft 387 (470)
++||++||.||++|+++++++++++|||+||++++||++|||++++++|+.||++++++|++++|+|+|+++||+|||||
T Consensus 241 a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfT 320 (403)
T TIGR01347 241 VAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFT 320 (403)
T ss_pred HHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhh
Q 036766 388 ISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLL 467 (470)
Q Consensus 388 ISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~ll 467 (470)
|||+|++|+.+|+|||||||+||||+|++.++|++.+|++++|++|+|||+||||+|||++||+||++|+++||+|+.||
T Consensus 321 ISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll 400 (403)
T TIGR01347 321 ITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL 400 (403)
T ss_pred EecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 036766 468 LDI 470 (470)
Q Consensus 468 l~~ 470 (470)
+++
T Consensus 401 ~~~ 403 (403)
T TIGR01347 401 LDL 403 (403)
T ss_pred hcC
Confidence 875
No 6
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=7.9e-79 Score=645.59 Aligned_cols=385 Identities=31% Similarity=0.450 Sum_probs=310.8
Q ss_pred cccccccccCCC--CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC
Q 036766 84 MYLWSHPFSSEG--GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE 161 (470)
Q Consensus 84 ~~~~~r~~~~~~--~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~ 161 (470)
+..+.|+|++.. +.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++++++++|+|.+|++++|+
T Consensus 96 ~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~ 175 (539)
T PLN02744 96 QMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGA 175 (539)
T ss_pred cccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCC
Confidence 344678999855 456999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -ccCCCCeEEEEeeCCCCCC------C-C--CCC---C-CCCC--CCC--CCC-CCcc----c---cc-C---CCCCCcc
Q 036766 162 -TVEPGTKIAVISKSGEGVA------H-V--APS---E-KIPE--KAA--PKP-PSAE----K---AK-E---DKPQPKV 211 (470)
Q Consensus 162 -~v~~G~~l~~i~~~~~~~~------~-~--~~~---~-~~~~--~~a--~~~-~~~~----~---~~-~---~~~~~~~ 211 (470)
.|++|++|+++.+++++.. . . ++. + ..++ ... ..+ +.++ . +. . ....|.+
T Consensus 176 ~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~a 255 (539)
T PLN02744 176 KEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLA 255 (539)
T ss_pred cccCCCCEEEEEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchh
Confidence 7999999999854333210 0 0 000 0 0000 000 000 0000 0 00 0 0112333
Q ss_pred ccccC------------CC-------CCC---CCCCCCCCCCCCC--CCCCCccceeechhhHHHHHHHHHhcccCcceE
Q 036766 212 ETVSE------------KP-------KAP---SPPPPKRTATEPQ--LPPKERERRVPMTRLRKRVATRLKDSQNTFAML 267 (470)
Q Consensus 212 ~~~~~------------~~-------~~~---a~~~~~~~~~~~~--~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~ 267 (470)
+.... .+ ++. +........+.+. .++...++++||++|||.||++|.+|++++|||
T Consensus 256 RrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~ 335 (539)
T PLN02744 256 RKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHY 335 (539)
T ss_pred HHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeE
Confidence 22100 00 000 0000000000000 011112356899999999999999999999999
Q ss_pred EEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEE
Q 036766 268 TTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVP 347 (470)
Q Consensus 268 ~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vp 347 (470)
|++.++|+|+|+++|+++++.+.+..|.|+||++||+||++.||++||+||+.|+++.|++++++|||+||++++||++|
T Consensus 336 t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vP 415 (539)
T PLN02744 336 YLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVP 415 (539)
T ss_pred EEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEEC
Confidence 99999999999999999987655556899999999999999999999999999999899999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCC-CCCCCCcccccCCCceeEEEEecceeEEEE--eC
Q 036766 348 VIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGG-VYGSLLSTPIINPPQSAILGMHSIVQRPMV--VG 424 (470)
Q Consensus 348 vI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG-~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv--~~ 424 (470)
||+|++++++.||++++++|+++||+|+|+++||+||||||||+| +||+.+|+|||||||+|||++|++.++|++ .+
T Consensus 416 VIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~ 495 (539)
T PLN02744 416 VVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGP 495 (539)
T ss_pred cCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccC
Confidence 999999999999999999999999999999999999999999998 899999999999999999999999999998 48
Q ss_pred CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 425 GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 425 G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
|++++|++|+|||+||||+|||+++|+||++|+++||||+.|||
T Consensus 496 g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 496 DQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred CeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 99999999999999999999999999999999999999998875
No 7
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3e-77 Score=620.44 Aligned_cols=372 Identities=46% Similarity=0.755 Sum_probs=307.9
Q ss_pred ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|+.++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCC--CCCCCCCC--CCCCCCcccccCCCCCCcccc---------------ccC----CCCC---CCC--CCCCC
Q 036766 177 EGVAHVAP--SEKIPEKA--APKPPSAEKAKEDKPQPKVET---------------VSE----KPKA---PSP--PPPKR 228 (470)
Q Consensus 177 ~~~~~~~~--~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~---------------~~~----~~~~---~a~--~~~~~ 228 (470)
++....+. .+.....+ ++.+....+.......|.+++ .+. .... ... ..+..
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~~~~~~~ 160 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKAAAAAA 160 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccccccccc
Confidence 64211110 00000000 000000000000011111111 000 0000 000 00000
Q ss_pred C-CCCCCC-CCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHH
Q 036766 229 T-ATEPQL-PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKA 306 (470)
Q Consensus 229 ~-~~~~~~-~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA 306 (470)
. ...+.. .....++++||+++||.|+++|..|++++||++.+.++|++.|+++|++++..+.++ |.|+||++|++||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~~~f~~kA 239 (404)
T COG0508 161 PAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTFLSFLVKA 239 (404)
T ss_pred cccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccHHHHHHHH
Confidence 0 000000 123457789999999999999999999999999999999999999999999887655 9999999999999
Q ss_pred HHHHHhhCCccceEEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCC
Q 036766 307 AVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGG 384 (470)
Q Consensus 307 ~a~Al~~~P~lN~~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~gg 384 (470)
++.||++||.+|++++++ .+++++++|||+||++++||++|||++++++++.+|++++.+|..++|+|+|+++||+||
T Consensus 240 ~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~gg 319 (404)
T COG0508 240 VVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGG 319 (404)
T ss_pred HHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCc
Confidence 999999999999888875 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHh
Q 036766 385 SFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPR 464 (470)
Q Consensus 385 tftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~ 464 (470)
||||||+|++|...|+||||+||++|||+|++.++|+|.+|++.+|++|+|+|+||||++||+++++||.+++++||||.
T Consensus 320 tftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~ 399 (404)
T COG0508 320 TFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPE 399 (404)
T ss_pred eEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 036766 465 RLLLD 469 (470)
Q Consensus 465 ~lll~ 469 (470)
.||++
T Consensus 400 ~ll~~ 404 (404)
T COG0508 400 RLLLE 404 (404)
T ss_pred hhhcC
Confidence 99874
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.1e-75 Score=611.29 Aligned_cols=368 Identities=22% Similarity=0.424 Sum_probs=297.7
Q ss_pred EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCCCCC
Q 036766 101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 180 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~~~ 180 (470)
|+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++++.+|+|.++++++|+.|++|++|+.|+.++++..
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999975543211
Q ss_pred C-CCCCCCC--CCCCCCCCCCccccc--CCCCCCccccc---------------cC-----------CCCCC--CCCCCC
Q 036766 181 H-VAPSEKI--PEKAAPKPPSAEKAK--EDKPQPKVETV---------------SE-----------KPKAP--SPPPPK 227 (470)
Q Consensus 181 ~-~~~~~~~--~~~~a~~~~~~~~~~--~~~~~~~~~~~---------------~~-----------~~~~~--a~~~~~ 227 (470)
. .++.+.. ....++.++...... .....|.+++. +. ..... .++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~ 160 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSA 160 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhccccccccccc
Confidence 0 0000000 000000000000000 00112322210 00 00000 000000
Q ss_pred ---CCCCC------CCCCCCC--ccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCcc
Q 036766 228 ---RTATE------PQLPPKE--RERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVK 296 (470)
Q Consensus 228 ---~~~~~------~~~~~~~--~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k 296 (470)
..+.. +..+... .++.+||+++||+||++|++|+ ++||||++.++|+|+|+++|+++++.. +..|.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~k 238 (416)
T PLN02528 161 EEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTVK 238 (416)
T ss_pred ccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCCc
Confidence 00000 0000001 2456899999999999999997 999999999999999999999998643 345899
Q ss_pred ccHHHHHHHHHHHHHhhCCccceEEeCC--eEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC
Q 036766 297 LGLMSGFVKAAVSGLQNQPIINAVIDGD--DIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDG 374 (470)
Q Consensus 297 ~s~~~~lvkA~a~Al~~~P~lN~~i~~~--~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g 374 (470)
+||++||+||+++||++||+||++|+++ ++++++++||||||++++||++|||++++++++.||++++++|++++|+|
T Consensus 239 ls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~g 318 (416)
T PLN02528 239 HTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAEN 318 (416)
T ss_pred ccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999864 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHH
Q 036766 375 SISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFL 453 (470)
Q Consensus 375 ~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~-~G~i~~r~~m~lsls~DHRviDG~~aa~Fl 453 (470)
+|+++|++||||||||+|++|+.+|+|||||||+||||+|++.++|++. +|++.+|++|+|||+||||+|||+++|+||
T Consensus 319 kL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl 398 (416)
T PLN02528 319 KLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFC 398 (416)
T ss_pred CCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 589999999999999999999999999999
Q ss_pred HHHHHHhhCHhhhhccC
Q 036766 454 RRIKDVVEEPRRLLLDI 470 (470)
Q Consensus 454 ~~l~~~Le~P~~lll~~ 470 (470)
++|+++||||+.||+++
T Consensus 399 ~~lk~~le~P~~lll~~ 415 (416)
T PLN02528 399 NEWKSYVEKPELLMLHM 415 (416)
T ss_pred HHHHHHHhCHHHHHhcc
Confidence 99999999999999874
No 9
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1.2e-75 Score=634.42 Aligned_cols=370 Identities=39% Similarity=0.630 Sum_probs=298.4
Q ss_pred CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
++.++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+.|++|++|++|+.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDA 212 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCC-----CCC-C------CCCCC-CCC----CCC--------CC---cccc---c-C---CCCCCcccccc-----
Q 036766 176 GEGVAH-----VAP-S------EKIPE-KAA----PKP--------PS---AEKA---K-E---DKPQPKVETVS----- 215 (470)
Q Consensus 176 ~~~~~~-----~~~-~------~~~~~-~~a----~~~--------~~---~~~~---~-~---~~~~~~~~~~~----- 215 (470)
+++... ... . ...+. ... ..+ .. +... . . ....|.+++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 432110 000 0 00000 000 000 00 0000 0 0 01123332200
Q ss_pred ----------C-----------CCCC--C-CCCCC----CCCCC--CCCC--CC---CCccceeechhhHHHHHHHHHhc
Q 036766 216 ----------E-----------KPKA--P-SPPPP----KRTAT--EPQL--PP---KERERRVPMTRLRKRVATRLKDS 260 (470)
Q Consensus 216 ----------~-----------~~~~--~-a~~~~----~~~~~--~~~~--~~---~~~~~~~pls~~Rk~ia~~m~~S 260 (470)
. .... . ..+.+ ....+ .+.. .+ ...++.+||++|||.||++|++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 0 0000 0 00000 00000 0000 00 01245689999999999999999
Q ss_pred ccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEE
Q 036766 261 QNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAV 338 (470)
Q Consensus 261 ~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV 338 (470)
++++||||++.++|||+|+++|+++|+.+.+++|.|+||++||+||++.||++||.||++|++ ++|++|+++||||||
T Consensus 373 ~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv 452 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAV 452 (590)
T ss_pred hccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEE
Confidence 999999999999999999999999997665666899999999999999999999999999974 479999999999999
Q ss_pred ecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEeccee
Q 036766 339 GTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQ 418 (470)
Q Consensus 339 ~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~ 418 (470)
++++||++|||+|+++++|.+|++++++|++++|+|+|+++||+||||||||+|+||+++|+||||+||+||||+|++++
T Consensus 453 ~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~ 532 (590)
T TIGR02927 453 DTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVK 532 (590)
T ss_pred ECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeC---C--eEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhh
Q 036766 419 RPMVVG---G--NVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRR 465 (470)
Q Consensus 419 ~Pvv~~---G--~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~ 465 (470)
+|++.+ | .+.+|++|+|||+||||+|||+++|+||++|+++||||..
T Consensus 533 ~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~ 584 (590)
T TIGR02927 533 RPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAF 584 (590)
T ss_pred EEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCccc
Confidence 999862 3 4999999999999999999999999999999999999874
No 10
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=3.6e-75 Score=610.46 Aligned_cols=366 Identities=33% Similarity=0.497 Sum_probs=297.8
Q ss_pred EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCc-cCCCCeEEEEeeCCCCC
Q 036766 101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET-VEPGTKIAVISKSGEGV 179 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~-v~~G~~l~~i~~~~~~~ 179 (470)
|+||++|++|+||+|++|+|++||.|++||+||+|||||++++++||++|+|.++++++|+. |++|++|++|+..+++.
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~~ 81 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKEDV 81 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999 99999999997543321
Q ss_pred C-C--------C--CCCC--CCCC-C---CCC--CC--C--Ccc--cc---cC----CCCCCccccccC-----------
Q 036766 180 A-H--------V--APSE--KIPE-K---AAP--KP--P--SAE--KA---KE----DKPQPKVETVSE----------- 216 (470)
Q Consensus 180 ~-~--------~--~~~~--~~~~-~---~a~--~~--~--~~~--~~---~~----~~~~~~~~~~~~----------- 216 (470)
. . . ++.. ..+. . +.+ .+ . .+. .. .. ....|.+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~g 161 (435)
T TIGR01349 82 ADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAG 161 (435)
T ss_pred ccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCCC
Confidence 1 0 0 0000 0000 0 000 00 0 000 00 00 011233322000
Q ss_pred -CC-------CC----CC----CCCCCCCC--CC-C-CCC-CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeec
Q 036766 217 -KP-------KA----PS----PPPPKRTA--TE-P-QLP-PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDM 275 (470)
Q Consensus 217 -~~-------~~----~a----~~~~~~~~--~~-~-~~~-~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDv 275 (470)
.+ +. .. ++.+...+ .. + ..+ ....++.+||++|||.|+++|++|++++||||++.++|+
T Consensus 162 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd~ 241 (435)
T TIGR01349 162 SGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECNV 241 (435)
T ss_pred CCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEEh
Confidence 00 00 00 00000000 00 0 000 011235689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766 276 TNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM 355 (470)
Q Consensus 276 t~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~ 355 (470)
|+|+++|+++++.+.+ |.++||++||+||+++||++||.||++|++++|++++++||||||++++||++|||++++++
T Consensus 242 t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 319 (435)
T TIGR01349 242 DKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNADAK 319 (435)
T ss_pred HHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCcccC
Confidence 9999999999865432 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCe---EeEEcE
Q 036766 356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGN---VVPRPM 432 (470)
Q Consensus 356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~---i~~r~~ 432 (470)
|+.||++++++|++++|+|+|+++||+||||||||+|++|+.+|+|||||||+||||+|++.++|++.+|+ +++|++
T Consensus 320 sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~ 399 (435)
T TIGR01349 320 GLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASI 399 (435)
T ss_pred CHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877 999999
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
|+|||+||||+|||++||+||++|+++||||+.||+
T Consensus 400 m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 400 MSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred EEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999998875
No 11
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=6.2e-75 Score=624.46 Aligned_cols=369 Identities=33% Similarity=0.535 Sum_probs=300.2
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.++|+||+||+ |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47999999999 99999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred CCCCC-CC--C---CCCCCC--C----CCCCCCccccc-----C-----C-CCCCcccccc-----------CC-C----
Q 036766 178 GVAHV-AP--S---EKIPEK--A----APKPPSAEKAK-----E-----D-KPQPKVETVS-----------EK-P---- 218 (470)
Q Consensus 178 ~~~~~-~~--~---~~~~~~--~----a~~~~~~~~~~-----~-----~-~~~~~~~~~~-----------~~-~---- 218 (470)
+.... .+ + ...+.. + ++.+.....+. . . ...|.++... .. +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI 274 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRI 274 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeE
Confidence 21100 00 0 000000 0 00000000000 0 0 1123222100 00 0
Q ss_pred ----------CCCC-CCCCCCCCCCC-----CCC-----CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechH
Q 036766 219 ----------KAPS-PPPPKRTATEP-----QLP-----PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN 277 (470)
Q Consensus 219 ----------~~~a-~~~~~~~~~~~-----~~~-----~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~ 277 (470)
...+ .+.....+..+ ..+ ....++.+||++|||.||++|++|++++||||++.++|+|+
T Consensus 275 ~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~ 354 (546)
T TIGR01348 275 LREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITE 354 (546)
T ss_pred eHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHH
Confidence 0000 00000000000 000 00123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766 278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKM 355 (470)
Q Consensus 278 L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~ 355 (470)
|+++|+++++.+.+ .|.|+||++||+||+++||++||.||++|++ ++|++++++||||||++++||++|||++++++
T Consensus 355 l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~ 433 (546)
T TIGR01348 355 MEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRK 433 (546)
T ss_pred HHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccC
Confidence 99999999876543 5889999999999999999999999999984 57999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEE
Q 036766 356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYI 435 (470)
Q Consensus 356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~l 435 (470)
|+.+|++++++|++++|+|+|+++||+||||||||+|++|+++|+|||||||++||++|++.++|++.+|++++|++|+|
T Consensus 434 sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~l 513 (546)
T TIGR01348 434 GITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPL 513 (546)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 436 ALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 436 sls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
||+||||+|||+++++||++|+++||||+.||+
T Consensus 514 tls~DHRviDGa~aa~Fl~~~~~~le~P~~ll~ 546 (546)
T TIGR01348 514 SLSYDHRVIDGADAARFTTYICESLADIRRLLL 546 (546)
T ss_pred eEeccchhcChHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999998875
No 12
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=6.3e-72 Score=611.26 Aligned_cols=371 Identities=30% Similarity=0.516 Sum_probs=299.7
Q ss_pred CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.+.++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus 204 ~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~ 281 (633)
T PRK11854 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVE 281 (633)
T ss_pred CCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CCCCCCCC-C---CCCCCC--C-CCCCC-CC-cc-c----ccC---CCCCCccccccC------------C---------
Q 036766 176 GEGVAHVA-P---SEKIPE--K-AAPKP-PS-AE-K----AKE---DKPQPKVETVSE------------K--------- 217 (470)
Q Consensus 176 ~~~~~~~~-~---~~~~~~--~-~a~~~-~~-~~-~----~~~---~~~~~~~~~~~~------------~--------- 217 (470)
+++..... + ....+. . +.+.+ +. .. . ... ....|.+++... .
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~D 361 (633)
T PRK11854 282 GAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKED 361 (633)
T ss_pred CCCccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHH
Confidence 43211000 0 000000 0 00000 00 00 0 000 011233332000 0
Q ss_pred -----CC----CCCCCCCCCCC-CC------CCCC--CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHH
Q 036766 218 -----PK----APSPPPPKRTA-TE------PQLP--PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLM 279 (470)
Q Consensus 218 -----~~----~~a~~~~~~~~-~~------~~~~--~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~ 279 (470)
.. ..+++.+.... +. +..+ ....++.+||++|||.||++|.+|++++|||+++.++|+|+|+
T Consensus 362 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~ 441 (633)
T PRK11854 362 VQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441 (633)
T ss_pred HHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHH
Confidence 00 00001000000 00 0000 0112356899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hhcCccccHHHHHHHHHHHHHhhCCccceEEe--CCeEEEeecccEEEEEecCCCeEEEEEEeCCCCC
Q 036766 280 KLRSEYKDAFL-EKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMN 356 (470)
Q Consensus 280 ~~rk~~~~~~~-~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~--~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~s 356 (470)
++|+++++... ++.|.++||++||+||+++||++||+||++|+ ++++++++++|||+||++++||++|||+++++++
T Consensus 442 ~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~s 521 (633)
T PRK11854 442 AFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKG 521 (633)
T ss_pred HHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCC
Confidence 99998875332 24589999999999999999999999999996 4689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEE
Q 036766 357 FADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIA 436 (470)
Q Consensus 357 l~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~ls 436 (470)
|.+|+++++++++++++|+|.++|++||||||||+||+|+++|+|||||||+|||++|++.++|++.+|.+..|++|+||
T Consensus 522 l~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~ls 601 (633)
T PRK11854 522 IIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLS 601 (633)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 437 LTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 437 ls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
|+||||+|||+++|+||++|+++||+|..|||
T Consensus 602 lt~DHRviDGa~aa~Fl~~lk~~LE~p~~ll~ 633 (633)
T PRK11854 602 LSYDHRVIDGADGARFITIINDRLSDIRRLVL 633 (633)
T ss_pred EEccchhcchHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999998875
No 13
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=3.1e-70 Score=572.39 Aligned_cols=368 Identities=39% Similarity=0.669 Sum_probs=300.4
Q ss_pred ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
|..+++||++|++|++|+|++|+|++||.|++||+|++|||||+.++++||++|+|.++++++|+.|++|++|+.|...+
T Consensus 1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred C-CCCCCC---CCCCCC-CCCCCC---CCCccc---c-cCC----CCCCccccccC------------CC-------CC-
Q 036766 177 E-GVAHVA---PSEKIP-EKAAPK---PPSAEK---A-KED----KPQPKVETVSE------------KP-------KA- 220 (470)
Q Consensus 177 ~-~~~~~~---~~~~~~-~~~a~~---~~~~~~---~-~~~----~~~~~~~~~~~------------~~-------~~- 220 (470)
+ +.+... ..+... +..+.. ...+.. . ... ...|.+++... .+ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~ 160 (411)
T PRK11856 81 EAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVE 160 (411)
T ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHH
Confidence 4 211110 000000 000000 000000 0 000 11233322000 00 00
Q ss_pred ------CCCCCCCCCCCCCCC-CCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhc
Q 036766 221 ------PSPPPPKRTATEPQL-PPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKH 293 (470)
Q Consensus 221 ------~a~~~~~~~~~~~~~-~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~ 293 (470)
..++.+....+.... .....++.+||+++||.||++|.+|++++|||+++.++|+|+|+++|+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~~~----- 235 (411)
T PRK11856 161 AAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLKAI----- 235 (411)
T ss_pred HHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHHhh-----
Confidence 000000000000000 00123567899999999999999999999999999999999999999998642
Q ss_pred CccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhc
Q 036766 294 GVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKAND 373 (470)
Q Consensus 294 g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~ 373 (470)
+.++||+++|+||+++||++||+||++|+++++++|++||+|+||++++||++|||+++++++|.+|+++++++++++++
T Consensus 236 ~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~ 315 (411)
T PRK11856 236 GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKARE 315 (411)
T ss_pred ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHH
Q 036766 374 GSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFL 453 (470)
Q Consensus 374 g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl 453 (470)
|+|.++|+.+|||||||+||+|..+++|+||+||++||++|++.++|++.+|++++|.+|||||+||||+|||+|+++||
T Consensus 316 ~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl 395 (411)
T PRK11856 316 GKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFL 395 (411)
T ss_pred CCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHhhhhcc
Q 036766 454 RRIKDVVEEPRRLLLD 469 (470)
Q Consensus 454 ~~l~~~Le~P~~lll~ 469 (470)
++|+++||+|+.||++
T Consensus 396 ~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 396 KALKELLENPALLLLE 411 (411)
T ss_pred HHHHHHHhCHHHHhcC
Confidence 9999999999999874
No 14
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.2e-70 Score=591.19 Aligned_cols=371 Identities=38% Similarity=0.595 Sum_probs=300.0
Q ss_pred CceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 96 GDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 96 ~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
....+|+||+||+ |+||+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+.|++|++|+.|...
T Consensus 117 ~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~ 195 (547)
T PRK11855 117 GGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVA 195 (547)
T ss_pred CCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecC
Confidence 3458999999999 999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCC-CC--CCCCCC----CC-CCCCCCC----CCc--cccc-C--C-CCCCcccccc---------------C------
Q 036766 176 GEGV-AH--VAPSEK----IP-EKAAPKP----PSA--EKAK-E--D-KPQPKVETVS---------------E------ 216 (470)
Q Consensus 176 ~~~~-~~--~~~~~~----~~-~~~a~~~----~~~--~~~~-~--~-~~~~~~~~~~---------------~------ 216 (470)
+++. .. .++.+. .+ ....+.. ... .... . . ...|.+++.. .
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~ 275 (547)
T PRK11855 196 AAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKE 275 (547)
T ss_pred CCccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHH
Confidence 3221 00 000000 00 0000000 000 0000 0 0 1123333200 0
Q ss_pred -----CCCCC-CCCCCC----CCC-C-C---CCCC----CCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechH
Q 036766 217 -----KPKAP-SPPPPK----RTA-T-E---PQLP----PKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTN 277 (470)
Q Consensus 217 -----~~~~~-a~~~~~----~~~-~-~---~~~~----~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~ 277 (470)
..... +.+.+. ..+ . . +... ....++.+||+++||.||++|++|++++|||+++.++|+|+
T Consensus 276 DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~ 355 (547)
T PRK11855 276 DVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355 (547)
T ss_pred HHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChH
Confidence 00000 000000 000 0 0 0000 00124568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEe--CCeEEEeecccEEEEEecCCCeEEEEEEeCCCC
Q 036766 278 LMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVID--GDDIIYRDYIDISIAVGTSKGLVVPVIRNADKM 355 (470)
Q Consensus 278 L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~--~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~ 355 (470)
|+++|+++++.+.+ .|.++||+++|+||+++||++||+||++|+ +++++++++||||+||++++||++|||+|++++
T Consensus 356 l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~ 434 (547)
T PRK11855 356 LEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKK 434 (547)
T ss_pred HHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccC
Confidence 99999999865543 489999999999999999999999999998 568999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEE
Q 036766 356 NFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYI 435 (470)
Q Consensus 356 sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~l 435 (470)
++.+|+++++++++++|+|+|.++|+.||||||||+||+|+++|+|+|||||+|||++|++.++|++.+|.+..|++|+|
T Consensus 435 sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~l 514 (547)
T PRK11855 435 SLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPL 514 (547)
T ss_pred CHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred EEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 436 ALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 436 sls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
||+||||+|||+|+++||++|+++||+|+.||+
T Consensus 515 slt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~ 547 (547)
T PRK11855 515 SLSYDHRVIDGATAARFTNYLKQLLADPRRMLL 547 (547)
T ss_pred eEEccchhcCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 999999999999999999999999999999875
No 15
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=5.6e-71 Score=560.44 Aligned_cols=372 Identities=29% Similarity=0.454 Sum_probs=304.2
Q ss_pred CCCceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC-CccCCCCeEEEE
Q 036766 94 EGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG-ETVEPGTKIAVI 172 (470)
Q Consensus 94 ~~~~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG-~~v~~G~~l~~i 172 (470)
.++.+..|.||.|+++|+||.|++|.++|||++.+||+||||||||++|+++++++|+|.||+++|| ..|++|.+||+|
T Consensus 34 ~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaii 113 (470)
T KOG0557|consen 34 KLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAII 113 (470)
T ss_pred cCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEE
Confidence 3688999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred eeCCCCCCCCCCCCC----C---CCC---CCCC------CC-CcccccCCCCC-----CccccccC--------------
Q 036766 173 SKSGEGVAHVAPSEK----I---PEK---AAPK------PP-SAEKAKEDKPQ-----PKVETVSE-------------- 216 (470)
Q Consensus 173 ~~~~~~~~~~~~~~~----~---~~~---~a~~------~~-~~~~~~~~~~~-----~~~~~~~~-------------- 216 (470)
.+.+++.+..+.... . ++. ++++ .+ +...+...... .++..+|.
T Consensus 114 ve~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~ 193 (470)
T KOG0557|consen 114 VEDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSS 193 (470)
T ss_pred ecccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCcccc
Confidence 988775433211100 0 000 0000 00 00000000000 01111110
Q ss_pred ----------------------CCCCCCCCCCCCCCCCCC--CCCCCccceeechhhHHHHHHHHHhcccCcceEEEEee
Q 036766 217 ----------------------KPKAPSPPPPKRTATEPQ--LPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNE 272 (470)
Q Consensus 217 ----------------------~~~~~a~~~~~~~~~~~~--~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~e 272 (470)
+.+..+.+.+...+..+. ..+...++.+|++.||+.|++||.+|++++||+|++.+
T Consensus 194 i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~ 273 (470)
T KOG0557|consen 194 IPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVD 273 (470)
T ss_pred CcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeee
Confidence 001111111100011111 11223478999999999999999999999999999999
Q ss_pred eechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeC-CeEEEeecccEEEEEecCCCeEEEEEEe
Q 036766 273 VDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDG-DDIIYRDYIDISIAVGTSKGLVVPVIRN 351 (470)
Q Consensus 273 vDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~-~~i~~~~~i~igiAV~~~~GL~vpvI~~ 351 (470)
+++++|+++|+++| -++.+.++|+++|++||.+.||.++|+.|++|.+ .-|.+++.|||++||.+++||++|+|+|
T Consensus 274 ~~~d~ll~~r~~ln---~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~n 350 (470)
T KOG0557|consen 274 VNLDKLLALREKLN---FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQN 350 (470)
T ss_pred eehHHHHHHHHHhh---hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhh
Confidence 99999999999998 2466889999999999999999999999999987 6788999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEE---eCCeEe
Q 036766 352 ADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMV---VGGNVV 428 (470)
Q Consensus 352 a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv---~~G~i~ 428 (470)
++.+.+.+|.+++.+|++++|+|+|.|++++||||+||||||||++.|+.||||||.+||++|......|. .++++.
T Consensus 351 a~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~ 430 (470)
T KOG0557|consen 351 ADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFS 430 (470)
T ss_pred cccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877663 245788
Q ss_pred EEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 429 PRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 429 ~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
....|+|||++|||++||+.+++||+.|++++|||..|||
T Consensus 431 ~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 431 VINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred eeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 9999999999999999999999999999999999999886
No 16
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.2e-66 Score=507.91 Aligned_cols=371 Identities=26% Similarity=0.480 Sum_probs=303.2
Q ss_pred ceEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 97 DLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 97 ~~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..+.|+|-++||++.|.++.+|+|||||+|++-|+||||++||++++|.+.++|+|++|+.+.+|...+|++|..++.++
T Consensus 63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~ 142 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVED 142 (474)
T ss_pred ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeecc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CcccccCCCCCCccccc-----------cC------------------CCCCCCCCCC
Q 036766 177 EGVAHVAPSEKIPEKAAPKPP-SAEKAKEDKPQPKVETV-----------SE------------------KPKAPSPPPP 226 (470)
Q Consensus 177 ~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~-----------~~------------------~~~~~a~~~~ 226 (470)
..+... ...+.+....+..+ ..+........|.+++. ++ .+.....|.+
T Consensus 143 ~~ds~e-~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~ 221 (474)
T KOG0558|consen 143 SQDSPE-DSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSP 221 (474)
T ss_pred CcCCcc-cCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCC
Confidence 422111 01000000000000 00000000011222210 00 0000000000
Q ss_pred C--C-----CCCCCCCCCCCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccH
Q 036766 227 K--R-----TATEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGL 299 (470)
Q Consensus 227 ~--~-----~~~~~~~~~~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~ 299 (470)
. . ++.....+.-.....+|+.+.+|+|.+.|+.+ ..+|||.+.+|||||.|+++|++++.. ....|+|+||
T Consensus 222 ~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltf 299 (474)
T KOG0558|consen 222 SEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTF 299 (474)
T ss_pred ceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhh-hhhcCceeee
Confidence 0 0 00000111123467799999999999999999 669999999999999999999999764 3456899999
Q ss_pred HHHHHHHHHHHHhhCCccceEEeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCC
Q 036766 300 MSGFVKAAVSGLQNQPIINAVIDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSIS 377 (470)
Q Consensus 300 ~~~lvkA~a~Al~~~P~lN~~i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~ 377 (470)
++||+||++.||.+||.+|+.+|. ..|++...+|||+|+++++||++|.|+|++.+|+.||++++++|.+..+.|+|+
T Consensus 300 mPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls 379 (474)
T KOG0558|consen 300 MPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLS 379 (474)
T ss_pred hHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcC
Confidence 999999999999999999999986 579999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCeEEEEeCCCCCCCCcccccCCCceeEEEEecceeEEEEe-CCeEeEEcEEEEEEEecccccChHHHHHHHHHH
Q 036766 378 IDEMAGGSFTISNGGVYGSLLSTPIINPPQSAILGMHSIVQRPMVV-GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRI 456 (470)
Q Consensus 378 ~~d~~ggtftISnlG~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~-~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l 456 (470)
++|+.|||||+||+|.+|+++..|+|++||+||.++|+|.+.|.+. .|++....+|.++|++||||+||+..|||-+.+
T Consensus 380 ~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~W 459 (474)
T KOG0558|consen 380 PEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQW 459 (474)
T ss_pred hhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 688999999999999999999999999999999
Q ss_pred HHHhhCHhhhhccC
Q 036766 457 KDVVEEPRRLLLDI 470 (470)
Q Consensus 457 ~~~Le~P~~lll~~ 470 (470)
++|||||+.|||++
T Consensus 460 K~YlE~Pa~mll~l 473 (474)
T KOG0558|consen 460 KEYLENPALMLLQL 473 (474)
T ss_pred HHHhhCHHHHhhcc
Confidence 99999999999875
No 17
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=4.5e-62 Score=472.78 Aligned_cols=229 Identities=47% Similarity=0.760 Sum_probs=205.0
Q ss_pred CccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccc
Q 036766 239 ERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN 318 (470)
Q Consensus 239 ~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN 318 (470)
++++++|++++||+||++|++|++++||+|++.+||+|+|+++|+++++...+ .+.++|+++|++||+++||++||+||
T Consensus 2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~-~~~kis~~~~likAva~AL~~~P~lN 80 (231)
T PF00198_consen 2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEE-PGGKISITDFLIKAVALALKEHPELN 80 (231)
T ss_dssp SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHHSGGGS
T ss_pred CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHh-hccCCChhHeeeehHhhhhHHHHHhc
Confidence 35688999999999999999999999999999999999999999999876543 34599999999999999999999999
Q ss_pred eEEeCCe-EEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766 319 AVIDGDD-IIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL 397 (470)
Q Consensus 319 ~~i~~~~-i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~ 397 (470)
++|+++. |++++++|||+||++++||++|||+|++++|+.||+++++++++++++|+|+++|++||||||||+|++|++
T Consensus 81 a~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~ 160 (231)
T PF00198_consen 81 ASWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVE 160 (231)
T ss_dssp EEEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-S
T ss_pred cccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcc
Confidence 9999877 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
+|+|||||||+|||++|+++++|++.+|+++.+++|++||+||||++||++|++||++|+++||+|+.|||
T Consensus 161 ~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll 231 (231)
T PF00198_consen 161 SFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL 231 (231)
T ss_dssp CEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred eeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 18
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=3.4e-61 Score=490.50 Aligned_cols=228 Identities=36% Similarity=0.629 Sum_probs=219.9
Q ss_pred cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV 320 (470)
Q Consensus 241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~ 320 (470)
++.+||++|||.||++|.+|++++||||++.|+|+|+|+++|+++++.+.++.|.++||++||+||++.||++||.||++
T Consensus 118 ~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~ 197 (347)
T PRK14843 118 IERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINAS 197 (347)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEE
Confidence 45689999999999999999999999999999999999999999987666666899999999999999999999999999
Q ss_pred EeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCC
Q 036766 321 IDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLL 398 (470)
Q Consensus 321 i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~ 398 (470)
|++ +++++++++|||+||++++||++|||+|++++++.||++++++|++++|+|+|+++||+||||||||+|++|+++
T Consensus 198 ~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~ 277 (347)
T PRK14843 198 LTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQS 277 (347)
T ss_pred EecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccc
Confidence 984 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 399 STPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 399 ~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
|+|||||||+||||+|++.++|++.+|++++|++|+|||+||||+|||+++|+||++|+++||+|+.||+
T Consensus 278 ~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 278 FGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred eeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998764
No 19
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.9e-60 Score=477.47 Aligned_cols=228 Identities=39% Similarity=0.628 Sum_probs=219.7
Q ss_pred cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV 320 (470)
Q Consensus 241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~ 320 (470)
++.+||++||+.||++|.+|++++|||+++.|||+|+|+++|+++++.+.+++|.|+||++||+||+++||++||.+|++
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~ 155 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK 155 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence 35689999999999999999999999999999999999999999998766667999999999999999999999999999
Q ss_pred EeC--CeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCCC
Q 036766 321 IDG--DDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSLL 398 (470)
Q Consensus 321 i~~--~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~~ 398 (470)
|++ ++++++++||||+||++++||++|||++++++|+.||++++++|++++|+|+|+++|++||||||||+|++|+.+
T Consensus 156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~ 235 (306)
T PRK11857 156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY 235 (306)
T ss_pred EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence 984 479999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhhhc
Q 036766 399 STPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRLLL 468 (470)
Q Consensus 399 ~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~lll 468 (470)
|+|||||||+||||+|++.++|++.+|+++.|++|+|||+||||+|||+++|+||++|+++||+|+.|++
T Consensus 236 ~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~ 305 (306)
T PRK11857 236 GVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV 305 (306)
T ss_pred eecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997654
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2.5e-50 Score=436.56 Aligned_cols=220 Identities=24% Similarity=0.390 Sum_probs=210.5
Q ss_pred cceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceE
Q 036766 241 ERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAV 320 (470)
Q Consensus 241 ~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~ 320 (470)
.+.+||++++++||++|..|+. +|+++...+||++.|+++|+.+|+.+.++.|.|+||+++|+||+++||++||.+|++
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 4678999999999999999965 999999999999999999999999998899999999999999999999999999999
Q ss_pred Ee--CCe--EEEeecccEEEEEecC-----CCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeC
Q 036766 321 ID--GDD--IIYRDYIDISIAVGTS-----KGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNG 391 (470)
Q Consensus 321 i~--~~~--i~~~~~i~igiAV~~~-----~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnl 391 (470)
++ +++ ++++++||||+||+++ +||+||+|+++++|+|.||.+++.++++|||+|+|+++|++||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 97 444 9999999999999998 58999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCceeEEEEecceeEEEEeC------CeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 036766 392 GVYGSLLSTPIINPPQSAILGMHSIVQRPMVVG------GNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE 461 (470)
Q Consensus 392 G~~G~~~~tpii~~p~~aIl~vG~i~~~Pvv~~------G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le 461 (470)
|++|+.+|+||||+||+||||+|++...|++.+ +++.++++|+||+|||||+|||+++++||++|+++||
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe 349 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL 349 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence 999999999999999999999999998888743 5899999999999999999999999999999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.94 E-value=4.1e-25 Score=211.85 Aligned_cols=180 Identities=11% Similarity=0.131 Sum_probs=157.3
Q ss_pred ceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCCCe
Q 036766 265 AMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSKGL 344 (470)
Q Consensus 265 P~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~GL 344 (470)
|.|+++.+||||+|+++.|+. +++|++.+++|+++|+|++|+||.++.+++++++|.||++++|..+++.
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~ 100 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 100 (219)
T ss_pred CceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCc
Confidence 559999999999999887765 7899999999999999999999999999999999999999999987765
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCCCcCCCCeEEEEeCCCCCCCCcccccC-CC--ceeEEEEecceeEE
Q 036766 345 VVPVIRNADKMNFADIEKEINTLAKKANDG-SISIDEMAGGSFTISNGGVYGSLLSTPIIN-PP--QSAILGMHSIVQRP 420 (470)
Q Consensus 345 ~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~~d~~ggtftISnlG~~G~~~~tpii~-~p--~~aIl~vG~i~~~P 420 (470)
.+..++-.+..++.+|.+...+.++++++. .+.++......|.||+++|+..+.++.-++ .. ...++++|++.++
T Consensus 101 tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GKy~~~- 179 (219)
T PRK13757 101 TFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQ- 179 (219)
T ss_pred eEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeeceEEE-
Confidence 666899999999999999999999999886 455555566899999999999888754444 33 4478999998765
Q ss_pred EEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 421 MVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 421 vv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
+| |.+||||++++|.++||+|+++|++.|++.|++
T Consensus 180 ---~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 180 ---GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred ---CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 55 678999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.93 E-value=1.1e-24 Score=207.66 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=140.0
Q ss_pred cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCC-eEEEeecccEEEEEec
Q 036766 262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGD-DIIYRDYIDISIAVGT 340 (470)
Q Consensus 262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~-~i~~~~~i~igiAV~~ 340 (470)
..-|+|+++.+||||+|+++.|+. +++|++++++++++|+|++|+||.+++++ +++++|.|+++++|..
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 346999999999999999988764 78999999999999999999999999987 9999999999999997
Q ss_pred CCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcC-CCCCCc-CCCCeEEEEeCCCCCCCCcccccC-CC--ceeEEEEec
Q 036766 341 SKGLVVPVIRNADKMNFADIEKEINTLAKKANDG-SISIDE-MAGGSFTISNGGVYGSLLSTPIIN-PP--QSAILGMHS 415 (470)
Q Consensus 341 ~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g-~l~~~d-~~ggtftISnlG~~G~~~~tpii~-~p--~~aIl~vG~ 415 (470)
+++..+..++-.+..++.+|.+...+.++++++. .+.+++ .....|.+|+++|+..+.++.-++ .+ ...++.+|+
T Consensus 93 ~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK 172 (206)
T PF00302_consen 93 KDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGK 172 (206)
T ss_dssp TTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE-
T ss_pred CCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeee
Confidence 6543556788888999999999999999998774 455543 455789999999999998755433 33 368899999
Q ss_pred ceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHH
Q 036766 416 IVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIK 457 (470)
Q Consensus 416 i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~ 457 (470)
+.++ +| |.+||||++++|.++||+|+++|+++||
T Consensus 173 ~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 173 YFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp -EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred eEeE----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 9875 66 6689999999999999999999999986
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.84 E-value=1.4e-19 Score=167.28 Aligned_cols=187 Identities=11% Similarity=0.104 Sum_probs=157.1
Q ss_pred cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecC
Q 036766 262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTS 341 (470)
Q Consensus 262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~ 341 (470)
...||+.++.++|+|.+..+.|++ +++|+..+++|+.+++++|++||.++.+|+.+++|.+++.++|..+
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 357999999999999999888765 7899999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCC-CCCCcCC-CCeEEEEeCCCCCCCCcccccCC---CceeEEEEecc
Q 036766 342 KGLVVPVIRNADKMNFADIEKEINTLAKKANDGS-ISIDEMA-GGSFTISNGGVYGSLLSTPIINP---PQSAILGMHSI 416 (470)
Q Consensus 342 ~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~-l~~~d~~-ggtftISnlG~~G~~~~tpii~~---p~~aIl~vG~i 416 (470)
++..+.+++-....++.+|++.....+++++++. +.++|-. .....+||++|+..+.+..-++. -...|+.+|+-
T Consensus 96 ~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf 175 (219)
T COG4845 96 ETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRF 175 (219)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecce
Confidence 8778889999999999999999999999998874 3333332 34568999999987765433331 13356777776
Q ss_pred eeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhCHhhh
Q 036766 417 VQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEEPRRL 466 (470)
Q Consensus 417 ~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~~l 466 (470)
.++ ||++ +||++++++|..+||.|+++|++.|++++++|-.+
T Consensus 176 ~~~----~Gkl----~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~ 217 (219)
T COG4845 176 YEE----DGKL----TLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCI 217 (219)
T ss_pred ecc----CCeE----EEeEEEEecccccchhhHHHHHHHHHHHhcCCCCC
Confidence 654 7755 59999999999999999999999999999998643
No 24
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.75 E-value=2.1e-18 Score=138.41 Aligned_cols=74 Identities=41% Similarity=0.780 Sum_probs=72.0
Q ss_pred EEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 99 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
.+|++|.+|..+.+++|.+|+|++||.|++||+||+|||||+.++|+||++|+|.++++++|+.|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999986
No 25
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.69 E-value=7.8e-17 Score=164.89 Aligned_cols=79 Identities=37% Similarity=0.614 Sum_probs=76.0
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|++|++|+.++..+
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999997644
No 26
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.69 E-value=1.1e-15 Score=161.91 Aligned_cols=81 Identities=37% Similarity=0.645 Sum_probs=76.4
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCC-ccCCCCeEEEEeeCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGE-TVEPGTKIAVISKSG 176 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~-~v~~G~~l~~i~~~~ 176 (470)
.++|+||++|++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|+|.++++++|+ .|++|++|++|+.++
T Consensus 2 ~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 2 AIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3589999999999999999999999999999999999999999999999999999999999995 799999999998655
Q ss_pred CC
Q 036766 177 EG 178 (470)
Q Consensus 177 ~~ 178 (470)
++
T Consensus 82 ~~ 83 (464)
T PRK11892 82 ES 83 (464)
T ss_pred Cc
Confidence 43
No 27
>PRK06748 hypothetical protein; Validated
Probab=99.66 E-value=4.6e-16 Score=126.74 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=61.0
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEc-CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIET-DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evet-dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
.|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++||.|++|++|+.|++
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~ 75 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRD 75 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEEC
Confidence 49999999999999999999999999 9999999999999999999999999999999999964
No 28
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.55 E-value=2.2e-14 Score=114.16 Aligned_cols=63 Identities=24% Similarity=0.418 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 29
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.50 E-value=9.3e-14 Score=110.67 Aligned_cols=72 Identities=38% Similarity=0.635 Sum_probs=69.7
Q ss_pred EEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 101 AVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
+.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+.+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999874
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.47 E-value=2.4e-13 Score=149.95 Aligned_cols=76 Identities=33% Similarity=0.604 Sum_probs=73.4
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
..+|+||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus 2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 3579999999 999999999999999999999999999999999999999999999999999999999999999875
No 31
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.46 E-value=1.4e-13 Score=123.82 Aligned_cols=63 Identities=37% Similarity=0.551 Sum_probs=61.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.-|++.+.+|++||+|++||.||+||.|||.++|+||.+|+|.+|++++||.|..||+|+.|+
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 349999999999999999999999999999999999999999999999999999999999985
No 32
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.45 E-value=3.5e-13 Score=106.82 Aligned_cols=62 Identities=29% Similarity=0.466 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|+|.+|++++||.|++||+|+++|+||+.+++.+|.+|+|.++++++|+.|..|++|+.|+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999984
No 33
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.44 E-value=3e-13 Score=147.76 Aligned_cols=78 Identities=46% Similarity=0.788 Sum_probs=75.2
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.++++||+||++|++|+|++|+|++||.|++||+|+++||||++++++|+.+|+|.++++++|+.|++|++|+.|+..
T Consensus 2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 2 AFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 367999999999999999999999999999999999999999999999999999999999999999999999999764
No 34
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.36 E-value=3e-12 Score=139.23 Aligned_cols=79 Identities=41% Similarity=0.679 Sum_probs=74.9
Q ss_pred eEEEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.++++||++|+ |.+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|+.|+..+.
T Consensus 2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~~~ 80 (547)
T PRK11855 2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAAGA 80 (547)
T ss_pred CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccccc
Confidence 46799999999 99999999999999999999999999999999999999999999999999999999999999975443
No 35
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.35 E-value=3.5e-12 Score=112.85 Aligned_cols=62 Identities=27% Similarity=0.518 Sum_probs=60.2
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 45999999999999999999999999999999999999999999999999999999999987
No 36
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.29 E-value=9.2e-12 Score=113.34 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=60.1
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 45899999999999999999999999999999999999999999999999999999999987
No 37
>PRK07051 hypothetical protein; Validated
Probab=99.29 E-value=1.9e-11 Score=99.57 Aligned_cols=69 Identities=30% Similarity=0.422 Sum_probs=63.2
Q ss_pred EEEEccCCCCCCceEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766 99 VDAVVPFMGESITDGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~ 171 (470)
.++..| ..|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.
T Consensus 4 ~~~~ap------~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~ 77 (80)
T PRK07051 4 HEIVSP------LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLAR 77 (80)
T ss_pred cEEeCC------CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEE
Confidence 455666 3477888 999999999999999999999999999999999999999999999999999999
Q ss_pred Ee
Q 036766 172 IS 173 (470)
Q Consensus 172 i~ 173 (470)
++
T Consensus 78 i~ 79 (80)
T PRK07051 78 IE 79 (80)
T ss_pred Ee
Confidence 85
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.28 E-value=1e-11 Score=134.80 Aligned_cols=76 Identities=34% Similarity=0.622 Sum_probs=72.7
Q ss_pred EEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 100 DAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 100 ~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|.|+.+|+|.++++++|+.|.+|++|++|+..+
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~~ 77 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVGA 77 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEeccc
Confidence 5899999987 999999999999999999999999999999999999999999999999999999999999997543
No 39
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.24 E-value=4.3e-11 Score=92.74 Aligned_cols=62 Identities=44% Similarity=0.706 Sum_probs=59.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
.+|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46999999999999999999999999999999999999999999999999999999999875
No 40
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.23 E-value=2.2e-11 Score=118.02 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=59.5
Q ss_pred eEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++||.|..|++|+.|+
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 477777 99999999999999999999999999999999999999999999999999999984
No 41
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.19 E-value=4.3e-11 Score=109.56 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=59.0
Q ss_pred eEEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
-|++.+ |+|++||.|++||+||.||+||+..+|+|+.+|+|.++++++|+.|..|++|+.|+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 477876 99999999999999999999999999999999999999999999999999999874
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.18 E-value=2.5e-10 Score=88.37 Aligned_cols=73 Identities=44% Similarity=0.745 Sum_probs=70.3
Q ss_pred EEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 100 DAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 100 ~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
++.+|+++....+|+|.+|+++.|+.+..|++++.+|++|+...+.++.+|++.+..+.+|+.+..|++|+.+
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999874
No 43
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.14 E-value=1.1e-10 Score=106.70 Aligned_cols=61 Identities=30% Similarity=0.481 Sum_probs=58.2
Q ss_pred EEEEE-------EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 113 GTLAK-------FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 113 g~I~~-------w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
|++.. |+|++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.|+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 67776 99999999999999999999999999999999999999999999999999999873
No 44
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.13 E-value=1.4e-10 Score=126.25 Aligned_cols=63 Identities=24% Similarity=0.523 Sum_probs=61.3
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999999964
No 45
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.02 E-value=5.7e-10 Score=130.70 Aligned_cols=63 Identities=32% Similarity=0.580 Sum_probs=61.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..|+|.+|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 369999999999999999999999999999999999999999999999999999999999884
No 46
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.96 E-value=9.8e-10 Score=119.88 Aligned_cols=59 Identities=24% Similarity=0.440 Sum_probs=57.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKI 169 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l 169 (470)
..|+|++|+|++||+|++||+|++||+|||+++|.||.+|+|.++++++|+.|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 45999999999999999999999999999999999999999999999999999999975
No 47
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.95 E-value=2e-09 Score=117.69 Aligned_cols=63 Identities=21% Similarity=0.431 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..|+|++|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|.
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 358999999999999999999999999999999999999999999999999999999999873
No 48
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.92 E-value=2.1e-09 Score=125.01 Aligned_cols=63 Identities=24% Similarity=0.489 Sum_probs=60.7
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..|+|++|+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 359999999999999999999999999999999999999999999999999999999999884
No 49
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.82 E-value=8.7e-09 Score=112.82 Aligned_cols=63 Identities=30% Similarity=0.554 Sum_probs=61.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 458999999999999999999999999999999999999999999999999999999999985
No 50
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.75 E-value=1.8e-08 Score=106.42 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|+|+.+.|++|++|.+||+|+.+|.|||+..|.||.+|+|.++.+++|+.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 51
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.73 E-value=2.5e-08 Score=116.61 Aligned_cols=62 Identities=29% Similarity=0.561 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|+|++|+|++||.|++||+|+++|+|||+.+|.||.+|+|.++++++|+.|..|++|+.|+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 49999999999999999999999999999999999999999999999999999999999985
No 52
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.60 E-value=8.8e-08 Score=104.28 Aligned_cols=62 Identities=26% Similarity=0.520 Sum_probs=60.1
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|.|+++.|++||+|++||+|+.+|.|||+..|.||.+|+|.+++|+.||.|..|+.|..++
T Consensus 1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 39999999999999999999999999999999999999999999999999999999999875
No 53
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.30 E-value=1e-06 Score=94.49 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|+|+++.|++|++|++||+|+.+..|||++.|.||.+|+|+++.+..|+.+..|+.+++++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 59999999999999999999999999999999999999999999999999999999999886
No 54
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.19 E-value=2.8e-06 Score=71.51 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=51.5
Q ss_pred eEEEEccCCCCCCceEEEEE-EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCc
Q 036766 98 LVDAVVPFMGESITDGTLAK-FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGET 162 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~-w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~ 162 (470)
...+-|=+.+..+ -|+|.. |++++|+.|++||+|+.||++|+..+|.||.+|+|.++..+.++.
T Consensus 15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 4556565555543 577777 666779999999999999999999999999999999987666553
No 55
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.10 E-value=5.1e-06 Score=95.27 Aligned_cols=66 Identities=30% Similarity=0.581 Sum_probs=62.4
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|++++|+|+.|+.|..||+-+|||.|||.|.+.++.+|+| +...+||+.+.+|++|+.+..++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCCh
Confidence 579999999999999999999999999999999999999999 567999999999999999987765
No 56
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.97 E-value=6.1e-06 Score=86.44 Aligned_cols=62 Identities=26% Similarity=0.462 Sum_probs=59.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.|.|.+++||+||.|++||.|+.++.|||...+.||.+|++..+.++.|++|.-|.+|.+++
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 37999999999999999999999999999999999999999999999999999999998863
No 57
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.84 E-value=3.1e-05 Score=66.89 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=44.6
Q ss_pred EEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766 99 VDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG 160 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG 160 (470)
..|-|=+.+.. .-|.|+.... ++|+.|++||++++||++|+..+|.||.+|+|.++.-+..
T Consensus 17 ~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 17 VRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred EEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 44544444432 2234444433 6699999999999999999999999999999999854433
No 58
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.79 E-value=8.4e-05 Score=78.48 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=58.9
Q ss_pred ceEEEEEEE-eCCCCeeeCCCcEEEEEcC------------------------------------------------Cee
Q 036766 111 TDGTLAKFL-KGPGDRVELDEPIAQIETD------------------------------------------------KVT 141 (470)
Q Consensus 111 ~eg~I~~w~-v~~Gd~V~~gd~l~evetd------------------------------------------------K~~ 141 (470)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999999 9999999999999999831 013
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||++|+|.+..+++|+.|..|++|+.|...+.
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCCe
Confidence 579999999999999999999999999999987654
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.76 E-value=5.6e-05 Score=65.65 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=43.9
Q ss_pred eEEEEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 98 LVDAVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
...|-|=+.+.. .-|.|+.+.. ++|+.|++||++++||++|+..+|.||.+|+|.++.
T Consensus 18 ~~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 18 IVRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred EEEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 345555554443 2244444444 569999999999999999999999999999999984
No 60
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.74 E-value=7.8e-05 Score=76.01 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=32.7
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||.+|+|..+.+++|+.|..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCCc
Confidence 469999999999999999999999999999986654
No 61
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.71 E-value=5.2e-05 Score=68.58 Aligned_cols=62 Identities=21% Similarity=0.251 Sum_probs=50.4
Q ss_pred eEEEEccCCCCCCceEEEEEEEeC-CCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCC
Q 036766 98 LVDAVVPFMGESITDGTLAKFLKG-PGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEG 160 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w~v~-~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG 160 (470)
...|-|=+++.. .-|.|+.+.++ +|++|++||+++.||++|+..+|.||.+|+|.++..+--
T Consensus 30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~ 92 (144)
T PRK13380 30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE 92 (144)
T ss_pred EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence 345555555543 35778888886 899999999999999999999999999999999875543
No 62
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.67 E-value=0.00013 Score=74.14 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=58.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|.|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999998731
Q ss_pred -------------------eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 140 -------------------VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 140 -------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
....|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~~~ 190 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQNS 190 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeCCC
Confidence 02469999999999999999999999999999876543
No 63
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.65 E-value=9e-05 Score=74.64 Aligned_cols=67 Identities=21% Similarity=0.374 Sum_probs=58.5
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe--------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV-------------------------------------------------- 140 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~-------------------------------------------------- 140 (470)
..|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999975311
Q ss_pred ---------------------eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 141 ---------------------TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 141 ---------------------~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
...|.||.+|+|..+.+++|+.+..|++|+.|...+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~~ 170 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLDP 170 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCCc
Confidence 2469999999999999999999999999999976543
No 64
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.62 E-value=0.00018 Score=63.79 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=55.2
Q ss_pred EEEEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEE---eecCCCccC---CCC-eEE
Q 036766 99 VDAVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKEL---VAKEGETVE---PGT-KIA 170 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i---~v~eG~~v~---~G~-~l~ 170 (470)
..|-|=+.+.. .-|.|+.+. .++|++|++||+++.||++|...+|.||.+|+|.++ +.+..+.+. -|+ -|+
T Consensus 24 ~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~ 102 (127)
T PRK01202 24 ATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLF 102 (127)
T ss_pred EEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEE
Confidence 44444444332 224444443 367999999999999999999999999999999999 454445555 554 888
Q ss_pred EEeeCC
Q 036766 171 VISKSG 176 (470)
Q Consensus 171 ~i~~~~ 176 (470)
.+...+
T Consensus 103 ~v~~~~ 108 (127)
T PRK01202 103 KIKPSD 108 (127)
T ss_pred EEEeCC
Confidence 887654
No 65
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.59 E-value=0.00017 Score=74.22 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=32.6
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||++|+|.++.+++|+.|..|++|+.|...+.
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~~ 244 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTDH 244 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCCC
Confidence 358999999999999999999999999999987653
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.41 E-value=0.00035 Score=73.36 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=32.8
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||.+|+|..+.+++|+.|..|++|+.|...+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCCc
Confidence 369999999999999999999999999999976554
No 67
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.40 E-value=0.00032 Score=71.71 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=32.0
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..|.||++|+|..+.+.+|+.|..|++|+.|...+
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecCC
Confidence 47999999999999999999999999999997554
No 68
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.39 E-value=0.00036 Score=72.98 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=57.2
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|+|.++++++||.|++||+|+.|++.-
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46999999999999999999999998631
Q ss_pred --------------------eeeeEecCCCeEEEEEeecCCCccCCC--CeEEEEeeCCC
Q 036766 140 --------------------VTIDVASPEAGVIKELVAKEGETVEPG--TKIAVISKSGE 177 (470)
Q Consensus 140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G--~~l~~i~~~~~ 177 (470)
....|.||++|+|.+..+++|+.|..| ++|+.|...+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~~~ 209 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQLDP 209 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEecCc
Confidence 123699999999999999999999986 58988876553
No 69
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.36 E-value=0.00026 Score=52.32 Aligned_cols=36 Identities=25% Similarity=0.549 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
++.|.+|.+|+|.++++++|+.|+.|++|+.++..+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 357889999999999999999999999999987643
No 70
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.26 E-value=0.00068 Score=70.92 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=57.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|.|.++++++||.|++||+|++|+..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998530
Q ss_pred --------------------eeeeEecCCCeEEEEEeecCCCccCCCC--eEEEEeeCCC
Q 036766 140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGT--KIAVISKSGE 177 (470)
Q Consensus 140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~--~l~~i~~~~~ 177 (470)
....|.||++|+|.+..+++|+.|.+|+ +|+.|...+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 207 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDP 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEEEecCC
Confidence 1246999999999999999999999985 6888865543
No 71
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.26 E-value=0.00072 Score=71.07 Aligned_cols=67 Identities=24% Similarity=0.313 Sum_probs=56.3
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|+|.++++++||.|++||+|++|+...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998531
Q ss_pred --------------------eeeeEecCCCeEEEEEeecCCCccCCCCe--EEEEeeCCC
Q 036766 140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGTK--IAVISKSGE 177 (470)
Q Consensus 140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~~--l~~i~~~~~ 177 (470)
-...|.||++|+|.+..+++|+.|..|++ |+.|...+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i~~~~~ 211 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDP 211 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEEEecCc
Confidence 12359999999999999999999999985 677755443
No 72
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.17 E-value=0.00049 Score=61.03 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=43.7
Q ss_pred EEEEccCCCCCCceEEEEEEE-eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeec
Q 036766 99 VDAVVPFMGESITDGTLAKFL-KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158 (470)
Q Consensus 99 ~~v~~P~lg~~~~eg~I~~w~-v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~ 158 (470)
..|-|=+.+.. .-|.|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++.-.
T Consensus 23 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 23 ATVGITEFAQD-ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred EEEeecHHHhh-CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 44444444432 234444443 357999999999999999999999999999999987633
No 73
>PRK12784 hypothetical protein; Provisional
Probab=97.13 E-value=0.0026 Score=50.71 Aligned_cols=65 Identities=15% Similarity=0.210 Sum_probs=58.9
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
-.|+|-++++.+++.|-+.++|+-|+++...++ |.--.+|.|.-+.+++||.+..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 469999999999999999999999999765554 88899999999999999999999999999764
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.10 E-value=0.00053 Score=50.68 Aligned_cols=30 Identities=10% Similarity=0.299 Sum_probs=27.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV 140 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~ 140 (470)
..|+|.+|+|++||.|++||+|+++++...
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~~ 38 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPDL 38 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence 469999999999999999999999997643
No 75
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.06 E-value=0.0011 Score=70.19 Aligned_cols=66 Identities=21% Similarity=0.351 Sum_probs=55.4
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|+|.++++++||.|++||+|++|....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 56999999999999999999999997531
Q ss_pred --------------------eeeeEecCCCeEEEEEeecCCCccCCCC--eEEEEeeCC
Q 036766 140 --------------------VTIDVASPEAGVIKELVAKEGETVEPGT--KIAVISKSG 176 (470)
Q Consensus 140 --------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G~--~l~~i~~~~ 176 (470)
....|.||++|+|....+++|+.|..|+ +|+.|...+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i~~~~ 232 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVITQTH 232 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEEecCC
Confidence 0236999999999999999999999985 677775443
No 76
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.02 E-value=0.0015 Score=67.97 Aligned_cols=67 Identities=21% Similarity=0.393 Sum_probs=55.7
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|.|.++++++||.|++||+|++++...
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~ 147 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD 147 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 45999999999999999999999998631
Q ss_pred ----------------------------------eeeeEecCCCeEEEEEeecCCCccCCC---CeEEEEeeCCC
Q 036766 140 ----------------------------------VTIDVASPEAGVIKELVAKEGETVEPG---TKIAVISKSGE 177 (470)
Q Consensus 140 ----------------------------------~~~~i~ap~~G~l~~i~v~eG~~v~~G---~~l~~i~~~~~ 177 (470)
....|.||++|+|..+.+..|+.|.+| ++|+.|...+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~l~~i~~~~~ 222 (370)
T PRK11578 148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMST 222 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCceEEEEecCCc
Confidence 012699999999999999999999776 47888865543
No 77
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.91 E-value=0.00086 Score=67.68 Aligned_cols=66 Identities=18% Similarity=0.414 Sum_probs=48.8
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC---------------------------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK--------------------------------------------------- 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK--------------------------------------------------- 139 (470)
..|.| +|+|++||.|++||+|++++++.
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 106 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI 106 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence 45999 99999999999999999999751
Q ss_pred ----------------eee----------eEecCCCeEEE-------------------------EEeecCCCccCCCCe
Q 036766 140 ----------------VTI----------DVASPEAGVIK-------------------------ELVAKEGETVEPGTK 168 (470)
Q Consensus 140 ----------------~~~----------~i~ap~~G~l~-------------------------~i~v~eG~~v~~G~~ 168 (470)
... .|.||++|+|. ++.+++|+.|..|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~ 186 (328)
T PF12700_consen 107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQP 186 (328)
T ss_dssp STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-EETSTTC
T ss_pred HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCce
Confidence 111 39999999999 999999999999999
Q ss_pred EEEEeeCCC
Q 036766 169 IAVISKSGE 177 (470)
Q Consensus 169 l~~i~~~~~ 177 (470)
|+.|.....
T Consensus 187 l~~i~~~~~ 195 (328)
T PF12700_consen 187 LFTIADLSN 195 (328)
T ss_dssp SEEEEEESE
T ss_pred eeeeccCCc
Confidence 999976543
No 78
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.80 E-value=0.0025 Score=56.10 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=33.6
Q ss_pred EEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 113 GTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 113 g~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
|.|+.+.. ++|+.|++|++++.||+.|...++.||.+|+|.++.
T Consensus 31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 44444433 558999999999999999999999999999999875
No 79
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.79 E-value=0.0031 Score=64.23 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=28.7
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|.||++|+|..+.+.+|+.|.. ++|+.|...+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGEVIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCCccCC-CccEEEecCC
Confidence 57899999999999999999986 7888887544
No 80
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.74 E-value=0.0051 Score=60.40 Aligned_cols=58 Identities=31% Similarity=0.486 Sum_probs=51.5
Q ss_pred EEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 115 LAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
+.+..++-||.|++||+|+.|+. .+|.||.+|+|.. ++.+|-.|+.|..|+.|+.-.+
T Consensus 174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~V~~G~Ki~dIDPR~~ 231 (256)
T TIGR03309 174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLTVTEGLKIGDVDPRGE 231 (256)
T ss_pred EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCCcCCCCEEEEECCCCC
Confidence 34559999999999999999985 7999999999977 5899999999999999987654
No 81
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.55 E-value=0.0045 Score=48.97 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=31.8
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|.||.+|+|.++++++||.|+.||+|+.++...
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K 37 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGDQIGKGDTLVLLESMK 37 (71)
T ss_pred EEeCCCCEEEEEEEeCCCCEECCCCEEEEEEecc
Confidence 5899999999999999999999999999998665
No 82
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.15 E-value=0.0057 Score=54.10 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=43.2
Q ss_pred eEEEEccCCCCCCceEEEEEE-EeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 98 LVDAVVPFMGESITDGTLAKF-LKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 98 ~~~v~~P~lg~~~~eg~I~~w-~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
...|-|-+.+.. .-|.|+-+ +.++|++|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 344545444443 23445444 34678899999999999999999999999999998764
No 83
>PRK06748 hypothetical protein; Validated
Probab=96.01 E-value=0.011 Score=48.51 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.8
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
-|.||..|+|.++++++||.|..||+|+.+++
T Consensus 6 ~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IET 37 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESSYVYEWEKLALIET 37 (83)
T ss_pred EEecCCcEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 48999999999999999999999999999998
No 84
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=95.92 E-value=0.016 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=31.7
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.|.||++|+|..+.+.+|+.|..|++|+.|.+.+
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVADLG 123 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEEcCC
Confidence 45899999999999999999999999999987654
No 85
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.85 E-value=0.026 Score=59.13 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.9
Q ss_pred eEecCCCeEEEEEee-cCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVA-KEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v-~eG~~v~~G~~l~~i~~~~ 176 (470)
.|.||++|+|..+.+ .+|+.|..|++|+.|.+..
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~~v~~g~~l~~i~~~~ 307 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGGVVQPGETLMEIVPED 307 (423)
T ss_pred EEECCCCcEEEEEEEEccCceecCCCeeEEEecCC
Confidence 489999999999876 7999999999999997543
No 86
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.67 E-value=0.019 Score=48.81 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=38.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
-|.-.+-.|++||+|++||.|++.+ +-....|-|+.+|+|..|.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~ 81 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIE 81 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEe
Confidence 3556678999999999999999997 4668899999999999874
No 87
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.46 E-value=0.03 Score=43.92 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.6
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|.||.+|+|.++.+++|+.|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGDTVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence 5789999999999999999999999999998755
No 88
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.34 E-value=0.026 Score=43.03 Aligned_cols=32 Identities=34% Similarity=0.659 Sum_probs=29.8
Q ss_pred EecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 144 VASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 144 i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
+.||.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 68999999999999999999999999999754
No 89
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.31 E-value=0.054 Score=54.92 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=47.8
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEc---CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIET---DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evet---dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
+=+....++.||.|++||+|++|=. +....++.||.+|+|.- ....-.|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYPLVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCCeecCCceEEEe
Confidence 4577788999999999999999965 45677899999999965 4455689999998876
No 90
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.21 E-value=0.028 Score=50.66 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.0
Q ss_pred eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
....|.||..|++-+++|++||.|+.||+||+|+.-
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiEAM 104 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIEAM 104 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEEee
Confidence 456799999999999999999999999999999863
No 91
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.95 E-value=0.092 Score=52.88 Aligned_cols=58 Identities=24% Similarity=0.331 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcC--CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETD--KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetd--K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
+=+.++.++.||.|++||+|+.|..- ....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~--~~~~~~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIG--RNNLPLVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEE--ecCCCccCCCCEEEEe
Confidence 33456799999999999999999642 3347899999999954 4456678899998876
No 92
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.92 E-value=0.096 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=32.3
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||.+|+|.+..+..|+.|.+|++|+.+.+.+.
T Consensus 209 T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp~~~ 244 (352)
T COG1566 209 TVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVPLDS 244 (352)
T ss_pred CEEECCCCceEEeecccCCCeecCCCceEEEecccc
Confidence 348999999999999999999999999999877554
No 93
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.77 E-value=0.09 Score=54.74 Aligned_cols=59 Identities=24% Similarity=0.437 Sum_probs=47.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
.|=+....++.||.|++||+|++|-. +....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRFVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCccccCCCeEEEe
Confidence 45677899999999999999999854 23444579999999954 5567789999999876
No 94
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.73 E-value=0.12 Score=52.87 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=47.9
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
.+=+....++.||.|++||+|++|-. .....+|.||.+|+|.-. ...-.|..|+.|+.|.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~~v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPGLVRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCCccCCCCEEEEEe
Confidence 35577889999999999999999865 345678999999999643 3445688899998874
No 95
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.39 E-value=0.13 Score=52.77 Aligned_cols=58 Identities=21% Similarity=0.334 Sum_probs=47.2
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEc----CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIET----DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evet----dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
+=+....++.||.|++||+|++|-. .....+|.||.+|+|.- ....-.|..|+.|+.|
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPGLIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCCccCCCCEEEEe
Confidence 4466788999999999999999964 23467899999999965 4455689999999876
No 96
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.11 E-value=0.077 Score=44.59 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=28.7
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|.||++|+|..+.+++|+.|..|++|+.|...+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGEVVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCCEECCCCEEEEEEccc
Confidence 3788999999988899999999999999887653
No 97
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.97 E-value=0.096 Score=46.63 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.5
Q ss_pred eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
-...|.||.+|+|.++++++||.|..|++|+.++...
T Consensus 60 ~~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lEamK 96 (130)
T PRK06549 60 GADAMPSPMPGTILKVLVAVGDQVTENQPLLILEAMK 96 (130)
T ss_pred CCcEEECCCCEEEEEEEeCCCCEECCCCEEEEEeccC
Confidence 3667999999999999999999999999999998653
No 98
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.79 E-value=0.086 Score=41.99 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=29.5
Q ss_pred eEecCCCeEEEE------EeecCCCccCCCCeEEEEeeCCC
Q 036766 143 DVASPEAGVIKE------LVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 143 ~i~ap~~G~l~~------i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
+|.+|..|...+ +++++|+.|+.||+|+.|+....
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCcc
Confidence 577888876555 99999999999999999987543
No 99
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=93.46 E-value=0.12 Score=47.24 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=32.6
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...|.||..|+|.++++++||.|..||+|+.++...
T Consensus 84 ~~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iEamK 119 (153)
T PRK05641 84 ENVVTAPMPGKILRILVREGQQVKVGQGLLILEAMK 119 (153)
T ss_pred CCEEECCCCeEEEEEEeCCCCEEcCCCEEEEEeecc
Confidence 356999999999999999999999999999997654
No 100
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.40 E-value=0.14 Score=52.29 Aligned_cols=61 Identities=28% Similarity=0.492 Sum_probs=48.5
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcC---CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETD---KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetd---K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
++=+++.+|+.||+|++||.|+.|-.. +...||.|+.+|+|..+.- --.+..|+.++.+..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~--~~~v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS--LRLVQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee--ccccCCCCeeeeecc
Confidence 466899999999999999999988764 8899999999999976631 225666677766643
No 101
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.33 E-value=0.26 Score=58.55 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=60.1
Q ss_pred CCceEEEEccCCCCCCce----------EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccC
Q 036766 95 GGDLVDAVVPFMGESITD----------GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVE 164 (470)
Q Consensus 95 ~~~~~~v~~P~lg~~~~e----------g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~ 164 (470)
.++...|++-.+|+.... |+..++.+++++.+..++.....+. .-...|.||..|+|.++++++||.|+
T Consensus 1019 ~g~~~~i~~~~~~~~~~~g~r~v~fElNGq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~ 1097 (1143)
T TIGR01235 1019 KGKTLIIKLQAVGATDSQGEREVFFELNGQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVN 1097 (1143)
T ss_pred CCcEEEEEeccccccCCCCcEEEEEEECCeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeC
Confidence 355666677677655333 4666777888887777666544432 22346999999999999999999999
Q ss_pred CCCeEEEEeeCC
Q 036766 165 PGTKIAVISKSG 176 (470)
Q Consensus 165 ~G~~l~~i~~~~ 176 (470)
.||+|++++...
T Consensus 1098 ~Gd~L~~iEamK 1109 (1143)
T TIGR01235 1098 KGDPLVVLEAMK 1109 (1143)
T ss_pred CCCEEEEEEecc
Confidence 999999998754
No 102
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.27 E-value=0.2 Score=50.51 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=39.5
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEc--CCeeeeEecCCCeEEEEEeecCCCccCCCCeE
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIET--DKVTIDVASPEAGVIKELVAKEGETVEPGTKI 169 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evet--dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l 169 (470)
.+=+...+++.||.|++||+|++|=. .....+|.||++|+|.-+. ..-.|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCcc
Confidence 35577788899999999999998843 2445678999999886543 23455666554
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.16 E-value=0.072 Score=53.08 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=24.8
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..|.++..|+|.+|+|++|+.|+.||+|+.|++..
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred EEEeCCCCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 57889999999999999999999999999998543
No 104
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.05 E-value=0.12 Score=53.12 Aligned_cols=41 Identities=34% Similarity=0.441 Sum_probs=35.4
Q ss_pred EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
+.||.+ .+.|.++.+|+|.++++++|+.|+.|++|+.|+..
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDPR 82 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECcH
Confidence 344443 68899999999999999999999999999999754
No 105
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=92.92 E-value=0.17 Score=50.11 Aligned_cols=42 Identities=33% Similarity=0.572 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCe--eeeEecCCCeEEEEEee
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKV--TIDVASPEAGVIKELVA 157 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~--~~~i~ap~~G~l~~i~v 157 (470)
|..-+.+|+|||+|++||+|++ ||- .+-+.||.+|+|.+|.-
T Consensus 38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 3345889999999999999996 554 45589999999998765
No 106
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.82 E-value=0.15 Score=46.46 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=35.3
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELV 156 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~ 156 (470)
.||..+-..+.+||.|.+||.|+-+.|-|..+- ++||.+|+|.=+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 467788899999999999999999999999876 9999999996554
No 107
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.66 E-value=0.12 Score=52.57 Aligned_cols=36 Identities=17% Similarity=0.344 Sum_probs=33.1
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.+.|.++.+|+|.++++++|+.|+.||+|+.|+..+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~~~ 77 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDPTN 77 (334)
T ss_pred eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECchH
Confidence 678999999999999999999999999999997543
No 108
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.64 E-value=0.16 Score=51.76 Aligned_cols=43 Identities=28% Similarity=0.514 Sum_probs=36.8
Q ss_pred EEEcCCeeeeEecCCC---eEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 134 QIETDKVTIDVASPEA---GVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 134 evetdK~~~~i~ap~~---G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|+...-...|.++.+ |+|.+++|++||.|+.|++|+.|+...
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~V~~G~~L~~ld~~~ 51 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDRVQAGQVLAELDSRP 51 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCCEecCCcEEEEecCcH
Confidence 4555555667899999 999999999999999999999998653
No 109
>PRK07051 hypothetical protein; Validated
Probab=92.47 E-value=0.19 Score=40.65 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=32.8
Q ss_pred eeeEecCCCeEEEE-------EeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKE-------LVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~-------i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..+|.||..|++.+ +++++|+.|..|++++.++...
T Consensus 3 ~~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k 45 (80)
T PRK07051 3 QHEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMK 45 (80)
T ss_pred ccEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcc
Confidence 45789999999999 9999999999999999998754
No 110
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=91.90 E-value=3.9 Score=43.81 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=87.3
Q ss_pred EeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhC--Ccc--ce-EE------eCCeEEEe-----eccc
Q 036766 270 FNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQ--PII--NA-VI------DGDDIIYR-----DYID 333 (470)
Q Consensus 270 ~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~--P~l--N~-~i------~~~~i~~~-----~~i~ 333 (470)
...++-+.+.++++.-++ + ++|++.++..+++.||.+. |.. +. .+ +..+.+.. +...
T Consensus 253 ~~~i~~~~~~~ll~~CR~-----~--~~TlT~~L~al~~~al~~~~~~~~~~~~~~~~~~~pvnlR~~~p~~~~~~~~~~ 325 (480)
T PF07247_consen 253 SLSISPEELKKLLKACRK-----H--GTTLTALLHALIALALSKVQLPKPKSEKSSFKISTPVNLRRFLPEDSELRDEYS 325 (480)
T ss_pred EEEECHHHHHHHHHHHHH-----c--CCCHHHHHHHHHHHHHHhhhcccccccCceEEEEeeeeCCCCCCcccccccccc
Confidence 445555555555444322 2 7899999999999999963 221 11 11 11111111 1223
Q ss_pred EEEEEecCCC--eEEEEEEe-CCCCCHHHHHHHHHHHHHHHh-cCC------------C-CC-----------CcCCCCe
Q 036766 334 ISIAVGTSKG--LVVPVIRN-ADKMNFADIEKEINTLAKKAN-DGS------------I-SI-----------DEMAGGS 385 (470)
Q Consensus 334 igiAV~~~~G--L~vpvI~~-a~~~sl~ei~~~i~~l~~~ar-~g~------------l-~~-----------~d~~ggt 385 (470)
.|..|...+- .+.++-.+ ....+|.++++++++-+++.. ++. + .. .-..++|
T Consensus 326 ~g~~v~~~~~~~~~~~~~~~~~~~~~fW~~a~~~~~~i~~~i~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~r~~t 405 (480)
T PF07247_consen 326 YGNFVGGIDFSYSISPVSASRGSSENFWELARQIQKEIKESIKNGKSLNGVGFLMNDFLLKYVDIWDFFKSKIGKPRRST 405 (480)
T ss_pred ceeEEEccceeeecccccccccchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHhccCCHHHHHHhhcCCCCCCc
Confidence 3444432221 11111111 122467888888887666532 221 0 11 1123689
Q ss_pred EEEEeCCCCCC-CC----ccccc-CCC---ceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHH-HHHHHH
Q 036766 386 FTISNGGVYGS-LL----STPII-NPP---QSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREA-VFFLRR 455 (470)
Q Consensus 386 ftISnlG~~G~-~~----~tpii-~~p---~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~a-a~Fl~~ 455 (470)
|.|||+|.+.. .. ..-++ ..+ -.+.+.++-+. +.+| -|.+++++=.-+++=.+. -.|++.
T Consensus 406 ~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS----~~~G------~L~i~~s~~~~~~~~~~~~~~~~~~ 475 (480)
T PF07247_consen 406 FEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIS----TKGG------GLNISISWQEGIVEDEEMEDEFMEL 475 (480)
T ss_pred EEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEE----cCCC------ceEEEEEEeCCcccccchHHHHHHH
Confidence 99999999973 10 01111 011 11112222111 0123 478999988888876666 488888
Q ss_pred HHHHh
Q 036766 456 IKDVV 460 (470)
Q Consensus 456 l~~~L 460 (470)
|++.|
T Consensus 476 ~~~~~ 480 (480)
T PF07247_consen 476 FKQNL 480 (480)
T ss_pred HHhhC
Confidence 88754
No 111
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=91.75 E-value=0.27 Score=52.07 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=45.2
Q ss_pred EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
-..++.|+.-..=+....|+. .-.+.|.++.+|+|.++++++|+.|+.||+|+.|+..+
T Consensus 64 v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~~~ 122 (415)
T PRK11556 64 AATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDPRP 122 (415)
T ss_pred EEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCEecCCCEEEEECcHH
Confidence 333444444444445677776 45788999999999999999999999999999997643
No 112
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=91.59 E-value=2.8 Score=44.32 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=89.6
Q ss_pred EEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEecCC------
Q 036766 269 TFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGTSK------ 342 (470)
Q Consensus 269 ~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~~~------ 342 (470)
...++++..+.+..+.. +.|++++++-|++.+|.++ ++.. + . .....+.+++.|+.-.
T Consensus 232 ~~~~~~~~~l~~~a~~~----------g~T~ndvllaa~~~al~~~--~~~~--~-~-~~~~~i~~~~pv~~R~~~~~~~ 295 (446)
T TIGR02946 232 AAQSLPLADVKAVAKAF----------GVTINDVVLAAVAGALRRY--LEER--G-E-LPDDPLVAMVPVSLRPMEDDSE 295 (446)
T ss_pred EeeccCHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHH--HHHc--C-C-CCCCceEEEEeeeccccccCCC
Confidence 45567777666554332 7799999999999999875 2221 1 1 1222366777776311
Q ss_pred -C----eEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCC-------------CC--------C-----cCCCCeEEEEeC
Q 036766 343 -G----LVVPVIRNADKMNFADIEKEINTLAKKANDGSI-------------SI--------D-----EMAGGSFTISNG 391 (470)
Q Consensus 343 -G----L~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l-------------~~--------~-----d~~ggtftISnl 391 (470)
| .+...+. .+..+..+...++++-...+++... -| . .....+++|||+
T Consensus 296 ~~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNv 374 (446)
T TIGR02946 296 GGNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNV 374 (446)
T ss_pred CCCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCC
Confidence 1 2221122 2334455555666666666665420 11 0 001247899999
Q ss_pred CCCCC---------CCcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 392 GVYGS---------LLSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 392 G~~G~---------~~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
|.... ....++.++..-..++++-.. .+| .|.+++++|-.++.. ..+|.+.+++.|++
T Consensus 375 pg~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~g------~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~ 441 (446)
T TIGR02946 375 PGPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YNG------QLDFGLLADRDAVPD--PQELADALEAALEE 441 (446)
T ss_pred CCCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cCC------eEEEEEeechhhCCC--HHHHHHHHHHHHHH
Confidence 76531 112222221111112222111 133 477999999998884 77788888877765
No 113
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.33 E-value=0.29 Score=52.48 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=35.5
Q ss_pred EEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 135 IETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 135 vetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
|..+.-...|.++..|+|.+++|+|||.|+.|++|+.++...
T Consensus 53 v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 53 IEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDNGN 94 (457)
T ss_pred EEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECchH
Confidence 443444567899999999999999999999999999997654
No 114
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.17 E-value=0.43 Score=49.58 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=41.0
Q ss_pred EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 118 FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 118 w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
+.++.|+....=..-+.|+.. -...|.++.+|.|.++++++|+.|+.||+|+.++..
T Consensus 39 ~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 39 LIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred EEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECcH
Confidence 344444433222234455544 355899999999999999999999999999999643
No 115
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.11 E-value=0.24 Score=53.03 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
|.--+..|++||+|++||+|++-.. -..+.+.||.+|+|.+|.
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~ 80 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAIN 80 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEe
Confidence 5556789999999999999998763 368889999999999984
No 116
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=91.08 E-value=0.35 Score=50.58 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=43.1
Q ss_pred eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
++.|+....-+..+.|+.. -...|.++.+|+|.++.+++|+.|+.||+|+.|+..
T Consensus 41 v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred eEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCEecCCCEEEEECcH
Confidence 3444434444456677755 367899999999999999999999999999999754
No 117
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.06 E-value=0.31 Score=48.85 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=32.3
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
+..|.+|.+|+|.++++++|+.|+.|++|+.++..
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQKVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCCEEcCCCEEEEECCH
Confidence 56799999999999999999999999999999654
No 118
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.97 E-value=0.32 Score=51.56 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.1
Q ss_pred CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 138 DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 138 dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..-...|.++.+|+|.++++++|+.|+.|++|+.|+...
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQPE 93 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECcHH
Confidence 333458999999999999999999999999999998654
No 119
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.81 E-value=0.34 Score=50.70 Aligned_cols=43 Identities=19% Similarity=0.422 Sum_probs=37.4
Q ss_pred EEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 134 QIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 134 evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.|........|.++.+|+|.+++|++||.|+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEccch
Confidence 5556677777899999999999999999999999999998654
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=90.60 E-value=0.26 Score=50.13 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=32.0
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.|.++.+|.|.++++++||.|+.||+|+.++..+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECcHH
Confidence 56999999999999999999999999999997543
No 121
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=90.52 E-value=0.27 Score=51.69 Aligned_cols=36 Identities=14% Similarity=0.337 Sum_probs=33.3
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.+.|.++.+|+|.++.+++|+.|+.||+|+.|+..+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~~~ 96 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTD 96 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECcHH
Confidence 788999999999999999999999999999997643
No 122
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=90.51 E-value=0.22 Score=50.11 Aligned_cols=41 Identities=27% Similarity=0.511 Sum_probs=28.5
Q ss_pred EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.|+. -+..|.++.+|+| ++++++|+.|+.|++|+.++..+
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~V~kG~~L~~ld~~~ 55 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDKVKKGQVLAELDSSD 55 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTSEEETT-EEEEEE-HH
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcCEECCCCEEEEEEChh
Confidence 44554 4567999999999 99999999999999999998654
No 123
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=89.97 E-value=0.21 Score=49.77 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=22.4
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeee
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTI 142 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~ 142 (470)
..|.|.+++|++||.|++||+|++++.-....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a 39 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTDYEA 39 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HHHHH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeeccch
Confidence 45999999999999999999999999654433
No 124
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=89.92 E-value=1.2 Score=49.38 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=32.1
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+|.||..|+|.++++++||.|+.||+|++++...
T Consensus 527 ~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iEamK 560 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGDEVKAGQAVLVIEAMK 560 (596)
T ss_pred eEecCcceEEEEEEeCCCCEeCCCCEEEEEEecc
Confidence 5999999999999999999999999999998755
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=89.91 E-value=0.51 Score=49.34 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=41.8
Q ss_pred eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
++.++.-..-.....|+.+ -..+|.++.+|+|.++.+++||.|+.||+|+.|+..
T Consensus 43 v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 43 VRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECCH
Confidence 3334333333445667754 467899999999999999999999999999999654
No 126
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.82 E-value=0.38 Score=49.18 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=32.7
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.+.|.++.+|+|.++++++||.|+.|++|+.++..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 66899999999999999999999999999999754
No 127
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.44 E-value=0.55 Score=50.32 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=36.6
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
|.-.+-.|++||+|++||+|++-... ....+.||.+|+|..|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 55567899999999999999966533 57889999999999984
No 128
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=87.84 E-value=0.56 Score=49.34 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=36.7
Q ss_pred EEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 133 AQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 133 ~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..|+. .-..+|.++.+|+|.++.+++||.|+.||+|+.|+..+
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~ 100 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPAT 100 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECCHH
Confidence 45553 44778999999999999999999999999999997543
No 129
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=87.48 E-value=0.57 Score=37.64 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=22.2
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+..+.=+.++++.||.|++||+|++|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 444555789999999999999999998764
No 130
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=87.46 E-value=0.76 Score=45.55 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.2
Q ss_pred eeEecCCCeEEEE-------EeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKE-------LVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~-------i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..|.||..|++.+ +++++||.|..||+|+.|+...-
T Consensus 198 ~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKm 240 (274)
T PLN02983 198 PPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKL 240 (274)
T ss_pred CeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeece
Confidence 4589999999999 59999999999999999987654
No 131
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=87.15 E-value=0.66 Score=49.59 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=36.3
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
|.-.+-.|++||+|++||+|++.+ ......+.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 344568899999999999999984 4468999999999998863
No 132
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=87.06 E-value=0.73 Score=47.31 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=37.4
Q ss_pred EEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 117 KFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
..+|++||.|++|++|+|-- ---.+-+.||.+|+|..|+- |+.=.--+++..++
T Consensus 42 ~mkV~~gD~VkkGq~LfEdK-knpgv~~Tap~sG~V~aI~R--G~KRvLqsVVI~~~ 95 (447)
T COG1726 42 SMKVREGDAVKKGQVLFEDK-KNPGVVFTAPVSGKVTAIHR--GEKRVLQSVVIKVE 95 (447)
T ss_pred cceeccCCeeeccceeeecc-cCCCeEEeccCCceEEEeec--ccceeeeeEEEEec
Confidence 46799999999999999733 12356689999999999864 43322333444443
No 133
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=86.29 E-value=1.2 Score=50.30 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=35.7
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
|.-.+..|++||+|.+||+|++-+ .-....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 445578899999999999999664 3367899999999998863
No 134
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=86.23 E-value=0.72 Score=42.35 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=25.0
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~eve 136 (470)
-..|+|.+|+++.||.|+.||+|++|+
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 368999999999999999999999985
No 135
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=85.96 E-value=1.6 Score=40.63 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=17.4
Q ss_pred eecCCCccCCCCeEEEEee
Q 036766 156 VAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 156 ~v~eG~~v~~G~~l~~i~~ 174 (470)
++++||.|+.||+|+.++.
T Consensus 107 ~Vk~Gd~Vk~G~~L~~~D~ 125 (169)
T PRK09439 107 IAEEGQRVKVGDPIIEFDL 125 (169)
T ss_pred EecCCCEEeCCCEEEEEcH
Confidence 7999999999999999974
No 136
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=85.79 E-value=1.3 Score=46.82 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=38.2
Q ss_pred CcEEEEEcCC-eeeeEecCCCeEEEEEe-ecCCCccCCCCeEEEEeeCC
Q 036766 130 EPIAQIETDK-VTIDVASPEAGVIKELV-AKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 130 d~l~evetdK-~~~~i~ap~~G~l~~i~-v~eG~~v~~G~~l~~i~~~~ 176 (470)
+..+.|+.+. -...|.++.+|+|.+++ +.+||.|+.||+|+.|+..+
T Consensus 111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~spe 159 (409)
T PRK09783 111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPD 159 (409)
T ss_pred EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEeCHH
Confidence 3445666543 45679999999999998 99999999999999998543
No 137
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=85.44 E-value=2.3 Score=43.00 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=26.8
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcC--CeeeeEecCCCeEEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETD--KVTIDVASPEAGVIKEL 155 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetd--K~~~~i~ap~~G~l~~i 155 (470)
+=+.+..++.||.|++||+|++|-.- ....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44556667777777777777776531 12345677777777543
No 138
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=85.41 E-value=2.1 Score=37.87 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.4
Q ss_pred EEeecCCCccCCCCeEEEEee
Q 036766 154 ELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 154 ~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+.++++||.|+.||+|+.++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEEecCCCEEcCCCEEEEEcH
Confidence 457999999999999999974
No 139
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.34 E-value=0.88 Score=41.69 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=24.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~eve 136 (470)
.+|+|++|+++.||.|+.||+|++|+
T Consensus 130 ~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 130 KSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 68999999999999999999999885
No 140
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=85.29 E-value=7.8 Score=40.09 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=26.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 122 ~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 122 ASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred CcceeeEEecCCCCcccCCceeEEecCC
Confidence 3599999999999999999999999976
No 141
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=85.15 E-value=2.2 Score=47.36 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=32.8
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...|.||.+|+|.++.+++|+.|+.|++|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 357999999999999999999999999999997654
No 142
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=84.77 E-value=2.1 Score=47.59 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=32.8
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...|.||..|+|.++++++||.|+.||+|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEecCc
Confidence 447999999999999999999999999999997654
No 143
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=84.66 E-value=1.7 Score=38.89 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.6
Q ss_pred eecCCCccCCCCeEEEEee
Q 036766 156 VAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 156 ~v~eG~~v~~G~~l~~i~~ 174 (470)
++++||.|+.||+|+.++.
T Consensus 89 ~v~~G~~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 89 LVKEGDKVKAGQPLIEFDL 107 (132)
T ss_dssp SS-TTSEE-TTEEEEEE-H
T ss_pred EEeCCCEEECCCEEEEEcH
Confidence 7899999999999999874
No 144
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=84.63 E-value=2.5 Score=42.18 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=48.7
Q ss_pred eEEEEEEEeCCCCeeeCCCcE--EEEEc--CCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 112 DGTLAKFLKGPGDRVELDEPI--AQIET--DKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l--~evet--dK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
.+-+....++.||.|++||+| .++-. +-...++.||.+|+| +...+.-.|..|+.|+.+..
T Consensus 227 ~~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~~v~~G~~l~~v~~ 291 (292)
T PF04952_consen 227 AGGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESPYVEQGDALAKVAK 291 (292)
T ss_dssp SSEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSSECTTTEEEEEEEE
T ss_pred ccEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCcccccCCCCeEEEEec
Confidence 355678999999999999999 54432 233568999999999 46778889999999998864
No 145
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=84.60 E-value=12 Score=36.11 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCHh
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEEPR 464 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~ 464 (470)
..+-+.+||-++||.-...|+++|.+++++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 45888999999999999999999999887654
No 146
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=84.55 E-value=1.3 Score=49.15 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=33.1
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
-.|.||..|.|.++++++||.|+.||+|+.++...-
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iEamKm 553 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQTVAEGEVLLILEAMKM 553 (582)
T ss_pred CeEeCCccEEEEEEEeCCCCEECCCCEEEEEEeccc
Confidence 469999999999999999999999999999987654
No 147
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=84.00 E-value=2.5 Score=37.17 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=18.6
Q ss_pred EEeecCCCccCCCCeEEEEee
Q 036766 154 ELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 154 ~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+.++++||.|+.||+|+.++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D~ 103 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFDL 103 (121)
T ss_pred EEEecCCCEEcCCCEEEEEcH
Confidence 557999999999999999974
No 148
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=83.85 E-value=2.5 Score=42.30 Aligned_cols=44 Identities=27% Similarity=0.520 Sum_probs=35.7
Q ss_pred cEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 131 PIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 131 ~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
....++. .-...+.++..|.|.++++++||.|+.|++|+.++..
T Consensus 57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 57 APGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDPS 100 (372)
T ss_pred eeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECCc
Confidence 3344444 3344788889999999999999999999999999873
No 149
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.70 E-value=2.2 Score=37.98 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=38.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKEL 155 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i 155 (470)
.||-++--.+..|+.|.+||+++-+.|-|..+- +++|.+|++.-+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 478888888999999999999999999998877 789999988643
No 150
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=82.95 E-value=1.3 Score=47.49 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=26.1
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
.+|+|.+|++++||.|..|++|+.|+.+
T Consensus 141 ~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 141 ASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 6799999999999999999999999854
No 151
>PF13437 HlyD_3: HlyD family secretion protein
Probab=82.60 E-value=1.7 Score=36.25 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=25.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
..|.|..+.+++|+.|.+|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 4699999999999999999999999853
No 152
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=82.60 E-value=2.2 Score=43.45 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=26.8
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
..|+|.++++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 57999999999999999999999998754
No 153
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=82.60 E-value=1.1 Score=36.81 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 114 TLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 114 ~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
-=++|++++|+.|++||+|++++-
T Consensus 45 ~~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 45 LEVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEEeCCCCCccCCcEEEEEEe
Confidence 345799999999999999999984
No 154
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=82.52 E-value=2.6 Score=38.70 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.5
Q ss_pred EEeecCCCccCCCCeEEEEee
Q 036766 154 ELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 154 ~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+.++++||.|+.||+|+.++-
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fDl 110 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFDL 110 (156)
T ss_pred EEEeeCCCEEccCCEEEEECH
Confidence 448999999999999999974
No 155
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=82.21 E-value=2.4 Score=40.08 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=41.5
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIA 170 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~ 170 (470)
+.|.. ++++|+.+++||.+.-++-. .++++--|.+ .++.+++|+.|..|+.|.
T Consensus 130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 44544 45899999999999999966 6666666765 277899999999999653
No 156
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=81.68 E-value=1.8 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=30.9
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
..|.||++|+|..+.+.+|+.|..|++|+.|...
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~~~ 287 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLEVE 287 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEEcc
Confidence 4699999999999999999999999999999543
No 157
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=81.56 E-value=1.2 Score=47.67 Aligned_cols=30 Identities=3% Similarity=0.059 Sum_probs=26.5
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV 140 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~ 140 (470)
..|.|.+++|++||.|++||+|+.++....
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 459999999999999999999999986543
No 158
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=81.44 E-value=1.3 Score=47.65 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=35.8
Q ss_pred EEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe
Q 036766 116 AKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV 156 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~ 156 (470)
...+|++||+|.+||+|.+=+. ....+.||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5778999999999999998885 88899999999999985
No 159
>PRK12784 hypothetical protein; Provisional
Probab=81.30 E-value=1.9 Score=34.68 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=34.3
Q ss_pred Ceee-eEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 139 KVTI-DVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 139 K~~~-~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
|..+ +|.||+-|+|.+++++|++.|-.=++|+.|...+.
T Consensus 2 k~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~~~dg 41 (84)
T PRK12784 2 KTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIRKNNG 41 (84)
T ss_pred ceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEeecCC
Confidence 4444 48999999999999999999999999999988765
No 160
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=81.02 E-value=2.8 Score=40.23 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=42.8
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCC-eEEE
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGT-KIAV 171 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~-~l~~ 171 (470)
.+.|+. ++++|+.+++||.+.-++-. .++++--|.+ .++.+++||.|..|+ +|+.
T Consensus 149 ~r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi~~ 204 (206)
T PRK05305 149 ARRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVLAR 204 (206)
T ss_pred ccEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEEEE
Confidence 345554 46899999999999999976 5666666665 278899999999998 4544
No 161
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=80.64 E-value=1.2 Score=40.69 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=35.3
Q ss_pred eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeec
Q 036766 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAK 158 (470)
Q Consensus 120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~ 158 (470)
-++|-.|.+||.++-+|+=|+.-+|.+|.+|.|.+|.-+
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 367889999999999999999999999999999998643
No 162
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=80.55 E-value=3.7 Score=37.69 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=38.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCee--------eeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVT--------IDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~--------~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
+|+--+-++++||+|++||+|+++.-+... .-|-+-.+-+-.-.....+..+..|+.+..+
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 588889999999999999999999876422 1122222222111222333367777777654
No 163
>PRK09294 acyltransferase PapA5; Provisional
Probab=80.50 E-value=38 Score=35.48 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHHHHHhhCCccceEEeCCeEEEeecccEEEEEec-------------CC--CeEEEEEEeCCCCCHHHH
Q 036766 296 KLGLMSGFVKAAVSGLQNQPIINAVIDGDDIIYRDYIDISIAVGT-------------SK--GLVVPVIRNADKMNFADI 360 (470)
Q Consensus 296 k~s~~~~lvkA~a~Al~~~P~lN~~i~~~~i~~~~~i~igiAV~~-------------~~--GL~vpvI~~a~~~sl~ei 360 (470)
++|++.+++-|++.++.+.-... +. .+.++++|+. .+ |.+...+.-....+|.|+
T Consensus 229 ~~t~~~~l~Aa~~~~l~r~~~~~----~~------~i~~~~pv~~R~~l~p~~~~~~~~n~~g~~~~~~~~~~~~sf~el 298 (416)
T PRK09294 229 RLTVNALVSAAILLAEWQLRRTP----HV------PLPYVYPVDLRFRLTPPVAATEGTNLLGAATYLAEIGPDTDIVDL 298 (416)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCC----CC------ceeeecchhhHhhcCCCCCcccceeeEeeeeeeccccCCCCHHHH
Confidence 68999999999888877541110 00 1112222321 01 111111222345699999
Q ss_pred HHHHHHHHHHHhc-CCCC--CCc----CCC------CeEEEEeCCCCCC
Q 036766 361 EKEINTLAKKAND-GSIS--IDE----MAG------GSFTISNGGVYGS 396 (470)
Q Consensus 361 ~~~i~~l~~~ar~-g~l~--~~d----~~g------gtftISnlG~~G~ 396 (470)
++++++..+...+ +.+. ..+ +.+ .++++||+|.++.
T Consensus 299 a~~v~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~Snlg~~~~ 347 (416)
T PRK09294 299 ARAIAATLRADLADGVIQQSFLHFGTAFEGTPPGLPPVVFITNLGVAPP 347 (416)
T ss_pred HHHHHHHHhhhhhcceeeehhhcccccccCCCCCCCCeEEEecCCcCCC
Confidence 9999887664433 2211 011 111 3789999999964
No 164
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=80.39 E-value=2 Score=46.84 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=31.3
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
-.+.||..|+|..+.|++|++|..||+|++++..
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQEVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCCEecCCCeEEEeEeh
Confidence 3489999999999999999999999999999863
No 165
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=80.28 E-value=1.8 Score=45.78 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.9
Q ss_pred CCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 147 PEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
-..|.|.++++++||.|+.||+|++|+++..
T Consensus 14 ~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa 44 (404)
T COG0508 14 MTEGTIVEWLKKVGDKVKEGDVLVEVETDKA 44 (404)
T ss_pred cceEEEEEEecCCCCeecCCCeeEEEEcCce
Confidence 4589999999999999999999999987653
No 166
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=78.03 E-value=3.8 Score=31.88 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=26.0
Q ss_pred CCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 148 EAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 148 ~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.+|++.++++++|+.|..|++|+.++...
T Consensus 12 ~~g~~~~~~v~~G~~v~~g~~l~~ie~~k 40 (73)
T cd06663 12 GDGTVVKWLKKVGDKVKKGDVLAEIEAMK 40 (73)
T ss_pred cCEEEEEEEcCCcCEECCCCEEEEEEeCC
Confidence 47999999999999999999999997654
No 167
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=77.93 E-value=2.8 Score=50.49 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.3
Q ss_pred eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
-...|.||..|+|.++++++||.|+.||+|+.++...
T Consensus 1131 ~~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK 1167 (1201)
T TIGR02712 1131 GAEQVESEYAGNFWKVLVEVGDRVEAGQPLVILEAMK 1167 (1201)
T ss_pred CCcEEeCCceEEEEEEEeCCCCEECCCCEEEEEEecC
Confidence 3556999999999999999999999999999997654
No 168
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=77.46 E-value=2.1 Score=42.85 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=25.9
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 579999999999999999999999998
No 169
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.26 E-value=2.6 Score=43.85 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.3
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.+.|-+..+|+|.++.++.++.|+.|++|+.|++.+
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECcHH
Confidence 455889999999999999999999999999998654
No 170
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=76.88 E-value=5.5 Score=37.08 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.9
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+|+=-+++|++||+|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 5777899999999999999999998653
No 171
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=76.55 E-value=2.8 Score=44.54 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=26.9
Q ss_pred CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 147 PEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
-..|+|.++++++||.|+.||+|++++...
T Consensus 56 ~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK 85 (418)
T PTZ00144 56 ISEGTVVEWKKKVGDYVKEDEVICIIETDK 85 (418)
T ss_pred cceEEEEEEEeCCCCEeCCCCEEEEEEEcc
Confidence 457899999999999999999999998754
No 172
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=75.94 E-value=2.4 Score=37.47 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.4
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+|+--++++++||+|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4777899999999999999999987543
No 173
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=75.17 E-value=2.5 Score=37.21 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.2
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+|+=-++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4667899999999999999999998553
No 174
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=74.68 E-value=3.7 Score=45.88 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.8
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+|+--+.+|++||+|++||+|+++.-++
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~ 569 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDK 569 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence 5677788889999999999988887653
No 175
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=74.31 E-value=4.5 Score=38.52 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=47.6
Q ss_pred EEccCCCCCCceEEEEEEEe-CCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766 101 AVVPFMGESITDGTLAKFLK-GPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~v-~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~ 171 (470)
+.|=.+|.. .-|+|+-+.. ++|+.|++||.+.-++= -.++.+--|.+-.. ++.+++|+.|..|+.|++
T Consensus 134 v~~v~Vga~-~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGAL-LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEEEEeccc-eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCEEEeeeEEeC
Confidence 344444442 3466666654 69999999999999986 55555544443323 788999999999999873
No 176
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=72.89 E-value=4.3 Score=43.07 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=27.3
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
..+|+|.++++++||.|..|++|++||++.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 368999999999999999999999999654
No 177
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=72.43 E-value=4.5 Score=42.88 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=26.7
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
..+|+|.++++++||.|..|++|++|+.+
T Consensus 49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 49 PADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 36799999999999999999999999865
No 178
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=72.24 E-value=7 Score=28.94 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=27.8
Q ss_pred cCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 146 SPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 146 ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
++.+|.+.++++.+|+.+..|++++.++...
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~ 41 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVETDK 41 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEEeCC
Confidence 6788999999999999999999999996543
No 179
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=71.87 E-value=8.1 Score=43.40 Aligned_cols=43 Identities=33% Similarity=0.447 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCeeeeEecCCCeEEEEE-----------------------------------eecCCCccCCCCeEEEEe
Q 036766 129 DEPIAQIETDKVTIDVASPEAGVIKEL-----------------------------------VAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 129 gd~l~evetdK~~~~i~ap~~G~l~~i-----------------------------------~v~eG~~v~~G~~l~~i~ 173 (470)
||-++..=++ -.|.||++|+|..+ ++++||.|+.||+|+.++
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 6777766655 47889999998876 688999999999999987
Q ss_pred e
Q 036766 174 K 174 (470)
Q Consensus 174 ~ 174 (470)
.
T Consensus 603 ~ 603 (648)
T PRK10255 603 L 603 (648)
T ss_pred H
Confidence 4
No 180
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=71.51 E-value=8.3 Score=43.88 Aligned_cols=32 Identities=34% Similarity=0.620 Sum_probs=30.2
Q ss_pred EecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 144 VASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 144 i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
|-||..|+|.++.|++|+.|+.||+|+.++..
T Consensus 1082 igApmpG~Vv~v~V~~G~~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGDKVKKGDVLAVIEAM 1113 (1149)
T ss_pred cCCCCCCceEEEEEccCCeecCCCeeeehhhh
Confidence 88999999999999999999999999999754
No 181
>PRK12999 pyruvate carboxylase; Reviewed
Probab=71.06 E-value=4.8 Score=48.21 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.7
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...|.||..|+|.++++++||.|+.||+|+.++...
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~leamK 1111 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIEAMK 1111 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 356999999999999999999999999999998654
No 182
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=69.56 E-value=5.8 Score=42.23 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=27.3
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
..+|+|.+|++++||.|..|++|++|+++.
T Consensus 47 ~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 47 RYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 467999999999999999999999998765
No 183
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=69.43 E-value=6.8 Score=43.86 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=22.8
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+|+=-+++|++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 5666788899999999999999888653
No 184
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=67.73 E-value=12 Score=41.96 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=43.7
Q ss_pred ceEEEEEEEeCCCCeeeC----CCcEEEEEcCCeeeeEecCCCeEEEEE-------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVEL----DEPIAQIETDKVTIDVASPEAGVIKEL------------------------------- 155 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdK~~~~i~ap~~G~l~~i------------------------------- 155 (470)
-+|+++.. .++-|.|=. ||-++..=+| -.|.||++|+|..+
T Consensus 469 ~~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~ 544 (610)
T TIGR01995 469 VAGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGE 544 (610)
T ss_pred cceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCC
Confidence 35666665 344444443 7777766544 47888888888776
Q ss_pred ----eecCCCccCCCCeEEEEeeC
Q 036766 156 ----VAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 156 ----~v~eG~~v~~G~~l~~i~~~ 175 (470)
++++||.|+.||+|+.++.+
T Consensus 545 gF~~~v~~g~~V~~G~~l~~~d~~ 568 (610)
T TIGR01995 545 GFEILVKVGDHVKAGQLLLTFDLD 568 (610)
T ss_pred CeEEEecCcCEEcCCCEEEEecHH
Confidence 79999999999999999753
No 185
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=67.72 E-value=3.2 Score=37.06 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=22.3
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKV 140 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~ 140 (470)
+|+--+|++++||+|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 56778999999999999999999986543
No 186
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=66.76 E-value=11 Score=42.28 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=45.3
Q ss_pred ceEEEEEEEeCCCCeeeC----CCcEEEEEcCCeeeeEecCCCeEEEEE-------------------------------
Q 036766 111 TDGTLAKFLKGPGDRVEL----DEPIAQIETDKVTIDVASPEAGVIKEL------------------------------- 155 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~----gd~l~evetdK~~~~i~ap~~G~l~~i------------------------------- 155 (470)
-+|+++... ++-|.|=. ||-++..=++ -.|.||++|+|..+
T Consensus 485 ~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 356666654 44555544 7777766555 47899999998876
Q ss_pred ----eecCCCccCCCCeEEEEeeC
Q 036766 156 ----VAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 156 ----~v~eG~~v~~G~~l~~i~~~ 175 (470)
++++||.|+.||+|+.++.+
T Consensus 561 gF~~~v~~Gd~V~~G~~l~~~D~~ 584 (627)
T PRK09824 561 FFTAHVNVGDKVNTGDLLIEFDIP 584 (627)
T ss_pred CceEEecCCCEEcCCCEEEEEcHH
Confidence 78899999999999999753
No 187
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=65.11 E-value=12 Score=37.43 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=41.2
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
..|..|. .+|+.|++||.+..++-. .++.+--|. |.+ ++.+++|+.|..|+.|+.|
T Consensus 210 r~i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 210 RFIQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred Cceeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 3445554 459999999999999974 555554443 333 6779999999999999754
No 188
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=62.92 E-value=11 Score=39.56 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.6
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe-------ecCCCccCCCCeEEEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV-------AKEGETVEPGTKIAVI 172 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~-------v~eG~~v~~G~~l~~i 172 (470)
.+|+-+.+.+.|.... +...+..-.+|-|..+|+|.++. |++||.|+.||+|..=
T Consensus 166 ~~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 166 IKGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred EEeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 3677777777654433 34445566789999999999984 7888999999998753
No 189
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=62.66 E-value=16 Score=44.29 Aligned_cols=79 Identities=25% Similarity=0.369 Sum_probs=61.1
Q ss_pred CceEEEEccCCCCC---Cc-eEEEEEEEeCC---CCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCe
Q 036766 96 GDLVDAVVPFMGES---IT-DGTLAKFLKGP---GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTK 168 (470)
Q Consensus 96 ~~~~~v~~P~lg~~---~~-eg~I~~w~v~~---Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~ 168 (470)
+...++.+-.|+++ +. .|+-..++-++ |-.+.-|-..|..|-+.--..+.+|..|++.+++|+.|+.|.+|++
T Consensus 633 gs~~~v~v~~L~dggLli~~~Gks~t~y~keev~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~ 712 (2196)
T KOG0368|consen 633 GSEVTVGVHQLSDGGLLISLDGKSYTIYWKEEVDGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQP 712 (2196)
T ss_pred CcEEEEEEEEecCCcEEEEECCceEEEEEeeccceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCe
Confidence 45677888888887 11 24444444443 4456678888888877777779999999999999999999999999
Q ss_pred EEEEee
Q 036766 169 IAVISK 174 (470)
Q Consensus 169 l~~i~~ 174 (470)
-|+|+.
T Consensus 713 YAeiEv 718 (2196)
T KOG0368|consen 713 YAEIEV 718 (2196)
T ss_pred eeeheh
Confidence 999874
No 190
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=62.36 E-value=8.5 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=29.4
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+.-|.||.+|++.. .++-||.|+.||+|+.+..
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGDSVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCCEEeCCCEEEEEcC
Confidence 45599999999976 8999999999999999964
No 191
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=61.76 E-value=10 Score=40.55 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=26.5
Q ss_pred ceEEEEEEEeCCCCe-eeCCCcEEEEEcCC
Q 036766 111 TDGTLAKFLKGPGDR-VELDEPIAQIETDK 139 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~-V~~gd~l~evetdK 139 (470)
.+|+|.+|++++||. |..|++|++||.+.
T Consensus 49 ~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 49 EEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 569999999999999 99999999998654
No 192
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=61.54 E-value=9.9 Score=42.72 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.3
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKV 140 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~ 140 (470)
+|+=-+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 57778999999999999999999987643
No 193
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=61.27 E-value=14 Score=40.04 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=37.4
Q ss_pred EEEEcCCeeeeEecCCCeEEEEE------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766 133 AQIETDKVTIDVASPEAGVIKEL------------------------VAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 133 ~evetdK~~~~i~ap~~G~l~~i------------------------~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..+..-+-+.+|.|+.+|+|..| +++.||.|..|++|++|..+.+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~~~ 473 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAESE 473 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEECCCH
Confidence 33455677899999999999887 7899999999999999985443
No 194
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=60.87 E-value=7.1 Score=43.50 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=30.4
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.|-||..|+|.+|.+++|+.|+.||+|+++...
T Consensus 1108 ~igAPMpG~vieikvk~G~kV~Kgqpl~VLSAM 1140 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGAKVKKGQPLAVLSAM 1140 (1176)
T ss_pred cccCCCCCceEEEEEecCceecCCCceEeeecc
Confidence 388999999999999999999999999999753
No 195
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=57.91 E-value=9.7 Score=40.64 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=28.0
Q ss_pred CCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 147 PEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
...|.|.++.-+|||.+..|++||+|+++..
T Consensus 50 MeeGnIvsW~kKeGdkls~GDvl~EVETDKA 80 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGDKLSAGDVLLEVETDKA 80 (470)
T ss_pred ccCCceeeEeeccCCccCCCceEEEEecccc
Confidence 4689999999999999999999999997654
No 196
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=57.66 E-value=17 Score=46.61 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.9
Q ss_pred EEEeCCCCeeeCCCcEEEEE
Q 036766 117 KFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~eve 136 (470)
..+|++|+.|++|+.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999864
No 197
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=57.63 E-value=11 Score=37.40 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=30.6
Q ss_pred eCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766 120 KGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171 (470)
Q Consensus 120 v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~ 171 (470)
..+|+.|++||.+..++-. .++.+--|.+-+--...+.+|+.|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhcc
Confidence 3467777777777777766 55554444332111345667777777777654
No 198
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=57.35 E-value=9.8 Score=38.16 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=18.9
Q ss_pred EEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 114 TLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 114 ~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
--..|++++||.|+.||.|+++|-+
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEecc
Confidence 3457888888888888888887743
No 199
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.81 E-value=17 Score=36.18 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=34.9
Q ss_pred eCCCCeeeC-CCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766 120 KGPGDRVEL-DEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171 (470)
Q Consensus 120 v~~Gd~V~~-gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~ 171 (470)
++.|+.+.+ |++|++.. .-++.+|++|.+ ++-+...+.+|+..+.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeee
Confidence 566888988 99999843 378999999977 4567777778887764
No 200
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=55.47 E-value=14 Score=39.85 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=25.7
Q ss_pred CceEEEEEEEeCCCC-eeeCCCcEEEEEcC
Q 036766 110 ITDGTLAKFLKGPGD-RVELDEPIAQIETD 138 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd-~V~~gd~l~evetd 138 (470)
..+|+|.++++++|+ .|+.|++|++|+.+
T Consensus 51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 357999999999995 79999999999854
No 201
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.45 E-value=18 Score=36.51 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
..-+.||.+|.+. ..++.|+.|..||+|++|.+...
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~dp~g 266 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVVDLYG 266 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 4568999999994 57999999999999999987544
No 202
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=53.17 E-value=29 Score=36.26 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=40.1
Q ss_pred EeCCCCeeeCCCcEEEEE-cCCeeeeE--ecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 119 LKGPGDRVELDEPIAQIE-TDKVTIDV--ASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 119 ~v~~Gd~V~~gd~l~eve-tdK~~~~i--~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.+|+||.|..||.+..|. |.-.+..| +.-..|+|..+ +.+|+ ..+.+.++.++..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~-~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD-YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC-eeEEEEEEEEEeCC
Confidence 368999999999999886 33344444 44559999774 56676 45667888888633
No 203
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=52.54 E-value=13 Score=40.26 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=30.1
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.+-||..|+|.++++++||.|..||.|+++...
T Consensus 603 v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 603 VIVAPMPGIIEKVLVKPGDKVKEGQELVVLIAM 635 (670)
T ss_pred ceecCCCCeeeeeeccchhhhcccCceEEEEec
Confidence 378999999999999999999999999998754
No 204
>COG3608 Predicted deacylase [General function prediction only]
Probab=52.14 E-value=25 Score=36.24 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=30.5
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.--+.||.+|.| +.+++.||.|+.|++|+++...+
T Consensus 256 ~~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~~~ 290 (331)
T COG3608 256 DEMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHDPP 290 (331)
T ss_pred cceeecCCCceE-EEeecCCCcccCCCeEEEEecCC
Confidence 345899999998 67899999999999999998753
No 205
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=51.63 E-value=18 Score=37.93 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=26.1
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhCH
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEEP 463 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P 463 (470)
+-|+++++|.++||.-+..|++.+.+.+...
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 4499999999999999999999999988753
No 206
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=51.37 E-value=17 Score=39.92 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.9
Q ss_pred CCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 147 PEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...|+|.++++++||.|..|++|+.++++.
T Consensus 124 m~eg~I~~W~vkeGD~V~~g~~l~eVETDK 153 (539)
T PLN02744 124 MTEGNIARWLKKEGDKVSPGEVLCEVETDK 153 (539)
T ss_pred cceeEEEEEEecCCCEecCCCeeEEEeecc
Confidence 456999999999999999999999998654
No 207
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.25 E-value=18 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=29.9
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
..-+.||.+|.+.- .++.||.|+.||+|+.|-+.
T Consensus 229 ~~~v~A~~~Gl~~~-~~~~G~~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFVP-AKHLGDIVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEEE-CcCCCCEECCCCEEEEEeCC
Confidence 45689999999954 69999999999999999874
No 208
>PRK04350 thymidine phosphorylase; Provisional
Probab=51.16 E-value=26 Score=38.11 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=37.0
Q ss_pred EEEcCCeeeeEecCCCeEEEEE------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766 134 QIETDKVTIDVASPEAGVIKEL------------------------VAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 134 evetdK~~~~i~ap~~G~l~~i------------------------~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.+..-+-+.+|.|+.+|+|..| +++.||.|..|++|++|....+
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~~~ 465 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAESE 465 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEecCCH
Confidence 3555678889999999999887 7899999999999999985443
No 209
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=51.08 E-value=23 Score=36.96 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=30.1
Q ss_pred eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 142 IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 142 ~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.-+.||..|.+. ..++.||.|+.||+|+.|.+...
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~d~~g 324 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEILDPLG 324 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEECCCC
Confidence 348999999995 57899999999999999987554
No 210
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=50.74 E-value=17 Score=38.78 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
+-|+++++|.++||.-+..|++.+.++...
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 559999999999999999999999998865
No 211
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=50.43 E-value=30 Score=34.78 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=31.0
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
...+.||.+|.+.. .++.||.|..||+|+.|.+...
T Consensus 219 ~~~v~A~~~G~~~~-~~~~Gd~V~~G~~ig~i~d~~~ 254 (287)
T cd06251 219 SVWVRAPQGGLLRS-LVKLGDKVKKGQLLATITDPFG 254 (287)
T ss_pred CeEEecCCCeEEEE-ecCCCCEECCCCEEEEEECCCC
Confidence 35799999999965 8999999999999999987543
No 212
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=50.37 E-value=18 Score=38.18 Aligned_cols=30 Identities=40% Similarity=0.488 Sum_probs=27.2
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCe
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKV 140 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~ 140 (470)
.+|+|.++++++|+.|..|++|+.|+.+..
T Consensus 52 ~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 52 VAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 579999999999999999999999987653
No 213
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=50.16 E-value=31 Score=36.36 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=37.7
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEe-------ecCCCccCCCCeEEE
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELV-------AKEGETVEPGTKIAV 171 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~-------v~eG~~v~~G~~l~~ 171 (470)
+|+-..+.+.|..... +.+.+..--+|-|..+|+|.++. |++||.|+.||+|..
T Consensus 163 ~GTrl~i~v~Ek~~~p------~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 163 RGTTLVIKVVEKQEPK------PVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred EeEEEEEEEEecCCCC------CccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 6777777776664311 11133345679999999999985 677888999998875
No 214
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=49.93 E-value=18 Score=38.34 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=27.5
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 449999999999999999999999998865
No 215
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=49.87 E-value=25 Score=29.84 Aligned_cols=49 Identities=31% Similarity=0.393 Sum_probs=33.2
Q ss_pred eeeCCCcEEEEEcC-CeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 125 RVELDEPIAQIETD-KVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 125 ~V~~gd~l~evetd-K~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
...++.++-++..- +..+.+ ....|.-.+.+|++||.|..||.|+..+.
T Consensus 14 ~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd~V~~GQ~Ia~~~~ 63 (101)
T PF13375_consen 14 ELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGDKVKKGQLIAEAEG 63 (101)
T ss_pred ccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCCEEcCCCEEEecCC
Confidence 34555666555533 333333 44466666889999999999999998753
No 216
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=49.73 E-value=27 Score=38.03 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=35.7
Q ss_pred EEcCCeeeeEecCCCeEEEEE------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766 135 IETDKVTIDVASPEAGVIKEL------------------------VAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 135 vetdK~~~~i~ap~~G~l~~i------------------------~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
+-.-+-+.+|.|+.+|+|..| +++.||.|..|++|++|..+.+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~~~ 474 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAESE 474 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEECCCH
Confidence 345667888999999999887 7899999999999999985443
No 217
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.68 E-value=17 Score=36.65 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=15.6
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 577777777777777777776
No 218
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=49.22 E-value=32 Score=38.17 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=41.1
Q ss_pred EeCCCCeeeCCCcEEEEE-cCCeeee--EecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 119 LKGPGDRVELDEPIAQIE-TDKVTID--VASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 119 ~v~~Gd~V~~gd~l~eve-tdK~~~~--i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
.+++||.|..||++.+|. |.-...- ++....|+|.++ +.+|+ ..+.++|+.++.
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~-ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN-YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEee
Confidence 588899999999999765 4434444 455568999875 67777 577899999986
No 219
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.79 E-value=28 Score=37.32 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=33.0
Q ss_pred cCCeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEeeCC
Q 036766 137 TDKVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 137 tdK~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~~~ 176 (470)
.-+-..+|.|+.+|+|.++ +++.||.|+.||+|++|...+
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHAAD 405 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEECCC
Confidence 3566778888888888877 788999999999999998544
No 220
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=48.51 E-value=29 Score=36.80 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=35.4
Q ss_pred EEcCCeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEeeCC
Q 036766 135 IETDKVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 135 vetdK~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+-..+-..+|.|+.+|+|..+ +.+.||.|..|++|++|...+
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~~~~ 399 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLYSSD 399 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEeCCC
Confidence 445677888999999999877 788999999999999998544
No 221
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.48 E-value=24 Score=35.38 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=30.4
Q ss_pred eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...-+.||..|.+. ..++.|+.|+.||+|+.+-+.-
T Consensus 222 ~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~dp~ 257 (288)
T cd06254 222 DVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVTDYF 257 (288)
T ss_pred CCEEEecCCCeEEE-EecCCCCEecCCCEEEEEECCC
Confidence 44568999999995 5689999999999999997654
No 222
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=47.06 E-value=25 Score=28.18 Aligned_cols=30 Identities=37% Similarity=0.568 Sum_probs=22.7
Q ss_pred CCCeEEEEEeecCCCccCCCCeEEEEeeCCCC
Q 036766 147 PEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178 (470)
Q Consensus 147 p~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~ 178 (470)
+..|+. ++++.||.|..|++|++|-..++.
T Consensus 30 ~~vGi~--l~~k~Gd~V~~Gd~l~~i~~~~~~ 59 (75)
T PF07831_consen 30 PAVGIE--LHKKVGDRVEKGDPLATIYANDEA 59 (75)
T ss_dssp TT-EEE--ESS-TTSEEBTTSEEEEEEESSSS
T ss_pred cCcCeE--ecCcCcCEECCCCeEEEEEcCChH
Confidence 445654 689999999999999999876653
No 223
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.94 E-value=20 Score=35.75 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=16.1
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEE
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~eve 136 (470)
+--++|++++|+.|++||+|++++
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 444567777777777777766666
No 224
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=46.71 E-value=58 Score=26.52 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=34.5
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.+|+|+.+.-.. ...-...|+...-...+-.. +..+.+++||.|+.|+.|+.+....
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEBSCS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecccccCCCEEEecCCCC
Confidence 3568887776632 33444555554433333322 4456689999999999999987443
No 225
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=46.69 E-value=21 Score=38.24 Aligned_cols=33 Identities=15% Similarity=0.458 Sum_probs=29.4
Q ss_pred EEEEEEEecccccChHHHHHHHHHHHHHhhCHh
Q 036766 432 MMYIALTYDHRLIDGREAVFFLRRIKDVVEEPR 464 (470)
Q Consensus 432 ~m~lsls~DHRviDG~~aa~Fl~~l~~~Le~P~ 464 (470)
...|.+.+||-+.||.-+..|.++|-+.|+++.
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~~ 172 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSLS 172 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhcc
Confidence 456899999999999999999999999998643
No 226
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=46.56 E-value=32 Score=36.96 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=33.8
Q ss_pred cCCeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEeeCC
Q 036766 137 TDKVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 137 tdK~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~~~ 176 (470)
..+-..+|.|+.+|+|..+ +++.||.|..|++|+.|...+
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeCCC
Confidence 4677888899999998776 788999999999999998544
No 227
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=46.43 E-value=22 Score=37.73 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=27.7
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
+-|+++++|.++||.-+..|++.+.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 459999999999999999999999998865
No 228
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=46.12 E-value=26 Score=36.03 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=29.7
Q ss_pred eeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeC
Q 036766 141 TIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 141 ~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
..-+.||.+|.+. ..++.|+.|+.||+|+.|.+.
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGDPVSKGDVIARVYPV 288 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCCEeCCCCEEEEEECC
Confidence 3459999999995 579999999999999999873
No 229
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=45.67 E-value=36 Score=34.72 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.8
Q ss_pred eeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 140 VTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 140 ~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...-+.||..|.+. -.++.|+.|+.||+|+.|.+..
T Consensus 243 ~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~d~~ 278 (316)
T cd06252 243 ARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIHFPE 278 (316)
T ss_pred CcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEECCC
Confidence 44568999999995 5799999999999999998754
No 230
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.66 E-value=21 Score=36.03 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=16.3
Q ss_pred EEEEEeCCCCeeeCCCcEEEEE
Q 036766 115 LAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~eve 136 (470)
-++|++++|+.|++||+|++++
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 4577777777777777777776
No 231
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.04 E-value=21 Score=35.85 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=16.6
Q ss_pred EEEEeCCCCeeeCCCcEEEEEc
Q 036766 116 AKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~evet 137 (470)
++|++++|+.|++||+|++++-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6778888888888877777763
No 232
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=44.90 E-value=21 Score=36.01 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=13.7
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 566666666666666666555
No 233
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=43.90 E-value=15 Score=36.48 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.7
Q ss_pred eEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 143 DVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 143 ~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
-+..++-|...+.+|+|||.|+.||+|++=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGDRVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCCEEeCCCeeEee
Confidence 357788999999999999999999999873
No 234
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=43.35 E-value=23 Score=35.47 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=14.6
Q ss_pred EEEEEeCCCCeeeCCCcEEEEE
Q 036766 115 LAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~eve 136 (470)
-++|++++|+.|++||+|++++
T Consensus 57 ~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 57 EVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3456677777777776666666
No 235
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=43.25 E-value=35 Score=36.52 Aligned_cols=40 Identities=35% Similarity=0.535 Sum_probs=33.9
Q ss_pred EEcCCeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEee
Q 036766 135 IETDKVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 135 vetdK~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~ 174 (470)
+-.-+-..+|.|+.+|+|..+ +++.||.|+.|++|++|..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~ 399 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYA 399 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeC
Confidence 345567888899999999887 7889999999999999983
No 236
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=43.18 E-value=21 Score=34.94 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=36.1
Q ss_pred CCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEE
Q 036766 123 GDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAV 171 (470)
Q Consensus 123 Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~ 171 (470)
|+.|++||.+.-++=. .++.+--|.+-+--+..+.+|+.|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999864 56665555332222567899999999999864
No 237
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=43.08 E-value=23 Score=35.94 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=10.1
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 344445555554444444444
No 238
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=42.71 E-value=59 Score=39.55 Aligned_cols=56 Identities=30% Similarity=0.428 Sum_probs=44.9
Q ss_pred EEeCCCCeeeCCCcEEEEEcC-------CeeeeEecCCCeEEEE------------------------------------
Q 036766 118 FLKGPGDRVELDEPIAQIETD-------KVTIDVASPEAGVIKE------------------------------------ 154 (470)
Q Consensus 118 w~v~~Gd~V~~gd~l~evetd-------K~~~~i~ap~~G~l~~------------------------------------ 154 (470)
.+|+.|+.|+++|+|||+-+. |+.-.|.|+.+|.|.-
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~V~h~~rtrhGNva~ll~ktGhLWILSG~vynlp 484 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADLIPEEKTDRQGNTTRKAQRGGLLWVLSGDVYNLP 484 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCCccccccccCCceeEEeccCcEEEEEeCCeEeeC
Confidence 589999999999999999863 5666799999997632
Q ss_pred ----EeecCCCccCCCCeEEEEe
Q 036766 155 ----LVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 155 ----i~v~eG~~v~~G~~l~~i~ 173 (470)
++++.||.|..+++|+...
T Consensus 485 ~~S~LfvKdqDqV~~~sVLAEtk 507 (1331)
T PRK02597 485 PGAEPVVSNGDRVEEGDVLAETK 507 (1331)
T ss_pred CCceEEEeCCCEEccCceEEEEe
Confidence 2667788888888888653
No 239
>COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only]
Probab=42.47 E-value=4.6e+02 Score=28.07 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred EEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHH--HHhh--CCccceEEeCCeEEEeecccEEEEEec----
Q 036766 269 TFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVS--GLQN--QPIINAVIDGDDIIYRDYIDISIAVGT---- 340 (470)
Q Consensus 269 ~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~--Al~~--~P~lN~~i~~~~i~~~~~i~igiAV~~---- 340 (470)
....+|-+++.+....++ +.+.|++++++.|+++ .+.. |+..|. .+-++++|+.
T Consensus 218 ~~~~I~~~ef~~ikay~k-------~~gaTiNDiilaa~~~fr~~y~~~~~k~~~-----------~lsi~~~VDlRkyl 279 (439)
T COG4908 218 EKTTIPSDEFKKIKAYAK-------VHGATINDIILAALLKFRLLYNTTHEKANN-----------YLSIDMPVDLRKYL 279 (439)
T ss_pred EEEecCHHHHHHHHHhhh-------hcCCcHHHHHHHHHHHHHHHHhhhchhhcC-----------eeeeceeeehhhhc
Confidence 455677776654433322 2367999999999844 3332 343433 3445566652
Q ss_pred --C-------CCeEEEEEEeCCCCCHHHHHHHHHHHHHH
Q 036766 341 --S-------KGLVVPVIRNADKMNFADIEKEINTLAKK 370 (470)
Q Consensus 341 --~-------~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ 370 (470)
. .+....+|+..+-.||....+.+++....
T Consensus 280 ~sk~~sI~Nls~~~~i~I~~dd~~~fe~t~~~vk~~~~~ 318 (439)
T COG4908 280 PSKEESISNLSSYLTIVINVDDVTDFEKTLEKVKGIMNP 318 (439)
T ss_pred cccccceeccceeEEEEEeccccccHHHHHHHHHhhcCc
Confidence 1 24667789998888999888888776554
No 240
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.33 E-value=25 Score=35.75 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=13.3
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEE
Confidence 566666666666666666655
No 241
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.14 E-value=25 Score=35.62 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.1
Q ss_pred EEEEEeCCCCeeeCCCcEEEEEc
Q 036766 115 LAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~evet 137 (470)
-++|++++|+.|++||+|++++-
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEEE
Confidence 34688888888888888777773
No 242
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.89 E-value=26 Score=34.99 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=18.3
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
+--++|++++|+.|+.||+|++++-
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 3445788888888888888777773
No 243
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=41.70 E-value=20 Score=38.40 Aligned_cols=31 Identities=29% Similarity=0.447 Sum_probs=25.9
Q ss_pred CCCceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 108 ESITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 108 ~~~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
+-+..+-=+.++++.||.|++||+|+.|-.+
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeCC
Confidence 4456666789999999999999999999843
No 244
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.47 E-value=26 Score=35.21 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=14.8
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 567777777777777777666
No 245
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=41.19 E-value=29 Score=36.98 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=27.4
Q ss_pred EEEEEEecccccChHHHHHHHHHHHHHhhC
Q 036766 433 MYIALTYDHRLIDGREAVFFLRRIKDVVEE 462 (470)
Q Consensus 433 m~lsls~DHRviDG~~aa~Fl~~l~~~Le~ 462 (470)
+-|+++++|.++||.-+..|++.+.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 459999999999999999999999998764
No 246
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=41.10 E-value=27 Score=35.24 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=16.5
Q ss_pred EEEEEEeCCCCeeeCCCcEEEEE
Q 036766 114 TLAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 114 ~I~~w~v~~Gd~V~~gd~l~eve 136 (470)
--++|++++|+.|++||+|++++
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEE
Confidence 44677777777777777777776
No 247
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.99 E-value=26 Score=35.44 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=13.6
Q ss_pred EEEEEeCCCCeeeCCCcEEEEE
Q 036766 115 LAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~eve 136 (470)
-++|++++|+.|++||+|++++
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3456666666666666666665
No 248
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=40.91 E-value=27 Score=35.68 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=17.4
Q ss_pred EEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 114 TLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 114 ~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
--++|++++|+.|++||+|++++-
T Consensus 78 ~~v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 78 LKVEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 335688888888888887777773
No 249
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=40.72 E-value=49 Score=27.03 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=18.1
Q ss_pred EEEeecCCCccCCCCeEEEEeeC
Q 036766 153 KELVAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 153 ~~i~v~eG~~v~~G~~l~~i~~~ 175 (470)
.++++++|+.|..|++|+.+...
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEeC
Confidence 46789999999999999999753
No 250
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=40.05 E-value=23 Score=37.91 Aligned_cols=30 Identities=33% Similarity=0.377 Sum_probs=25.3
Q ss_pred CCCceEEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 108 ESITDGTLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 108 ~~~~eg~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
+.++.+-=+.++++.||+|++||+|+.|-.
T Consensus 374 d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 374 DTIDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred CCcCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 335566668999999999999999999984
No 251
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=39.89 E-value=24 Score=37.78 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=26.1
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcCC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETDK 139 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetdK 139 (470)
+..+-=+.++++.||.|++||+|+.|-+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 456667899999999999999999998765
No 252
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=39.80 E-value=24 Score=28.92 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=19.0
Q ss_pred EEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 113 GTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 113 g~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
+-+....|++||.|++||.|+.+...
T Consensus 50 ~~l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 50 GHLDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp EEESEESS-TTSEE-TTCEEEEEBSC
T ss_pred eccccccceecccccCCCEEEecCCC
Confidence 33445569999999999999999854
No 253
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=39.48 E-value=26 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=28.1
Q ss_pred CCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 106 MGESITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 106 lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
+|-.+..+-=+.++++.||.|++||+|+.|-++
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEECC
Confidence 455677777889999999999999999999743
No 254
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=38.90 E-value=31 Score=34.45 Aligned_cols=21 Identities=43% Similarity=0.665 Sum_probs=16.1
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||+|++++
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 467888888888887777777
No 255
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=38.51 E-value=29 Score=35.07 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=39.6
Q ss_pred EEEEEEeCC----CCeeeCCCcEEEEEcCCeeeeEecCCCeEEE-EEeecCCCccCCCCeEEEEe
Q 036766 114 TLAKFLKGP----GDRVELDEPIAQIETDKVTIDVASPEAGVIK-ELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 114 ~I~~w~v~~----Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~-~i~v~eG~~v~~G~~l~~i~ 173 (470)
.+..|.... |..|++||.+..++=. .++.+--|.+ .+. ...+.+|+.|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCcc
Confidence 444554432 7799999999998864 5555444433 331 23478999999999998654
No 256
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.24 E-value=28 Score=37.83 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=28.2
Q ss_pred CCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 106 MGESITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 106 lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
+|--+..+-=+.++++.||.|++||+|+.|-.+
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEecC
Confidence 555677777889999999999999999999843
No 257
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.10 E-value=68 Score=28.82 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=28.5
Q ss_pred cCCCeEEEEEeecCCCccCCCCeEEEEeeCCCC
Q 036766 146 SPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 178 (470)
Q Consensus 146 ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~~ 178 (470)
-|..|++.-..+..|+.+-.|+++|-+.+...+
T Consensus 96 iPvEGYvVtpIaDvG~RvrkGd~~AAvttRkG~ 128 (161)
T COG4072 96 IPVEGYVVTPIADVGNRVRKGDPFAAVTTRKGE 128 (161)
T ss_pred EecCcEEEEEeecccchhcCCCceeEEEecccc
Confidence 378899999999999999999999998765543
No 258
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=38.00 E-value=32 Score=34.63 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=12.0
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
++|++++|+.|++||.|++++
T Consensus 62 ~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 62 IDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 455555555555555555555
No 259
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.87 E-value=32 Score=34.67 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=11.3
Q ss_pred EEEEeCCCCeeeCCCcEEEEE
Q 036766 116 AKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 116 ~~w~v~~Gd~V~~gd~l~eve 136 (470)
+.|++++|+.|++||+|++++
T Consensus 60 v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 60 VEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 345555555555555555554
No 260
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=37.85 E-value=68 Score=35.71 Aligned_cols=57 Identities=25% Similarity=0.412 Sum_probs=42.3
Q ss_pred EeCCCCeeeCCCcEEEEEcC-Cee--eeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 119 LKGPGDRVELDEPIAQIETD-KVT--IDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 119 ~v~~Gd~V~~gd~l~evetd-K~~--~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.+++||.|..||.|..|.-. -.. +-++.-..|++..| +.+|+ ..+.++|+.+++.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~-ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD-YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC-ceeeeEEEEEEccCC
Confidence 47889999999999997744 222 23555668999765 67776 567889999987554
No 261
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=37.84 E-value=76 Score=34.78 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=47.4
Q ss_pred EEccCCCCCCceEEEEEEE----eCCCCeeeCCCcEEEEEcCC-e-eeeEecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 101 AVVPFMGESITDGTLAKFL----KGPGDRVELDEPIAQIETDK-V-TIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~----v~~Gd~V~~gd~l~evetdK-~-~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+..|.|... .+|. +++||+|..||+|..|.-.- . .+-++.+..|....+.+.+|+ -.+.++|+.+++
T Consensus 105 v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~-ytv~d~ia~v~~ 177 (588)
T COG1155 105 LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE-YTVEDVIATVST 177 (588)
T ss_pred CCCCCCCcc------cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC-ceeeEEEEEEec
Confidence 455666543 2453 47999999999999775332 2 222555656666677777786 456789999987
Q ss_pred CCC
Q 036766 175 SGE 177 (470)
Q Consensus 175 ~~~ 177 (470)
++.
T Consensus 178 ~~g 180 (588)
T COG1155 178 EGG 180 (588)
T ss_pred CCC
Confidence 665
No 262
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=37.02 E-value=29 Score=37.79 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCCCCceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 105 FMGESITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 105 ~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
.+|-.+..+-=+.++++.||.|++||+|+.|-.+
T Consensus 439 ~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 439 EAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred HcCCCcCcccCeEEeccCcCEeCCCCeEEEEECC
Confidence 3555677778889999999999999999999843
No 263
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=36.27 E-value=33 Score=36.42 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.0
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
+..+-=+.++++.||.|++||+|+.|-++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 56666689999999999999999999754
No 264
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=34.88 E-value=98 Score=31.84 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEeecCCCccCCCCeEEEEeeCC
Q 036766 152 IKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 152 l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+.++.|++||.|+.||.|+.+...+
T Consensus 269 l~~i~Vk~Gq~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 269 NDTMLVREQQEVKAGQKIATMGSTG 293 (319)
T ss_pred CCccccCCcCEECCCCeEEeEcCCC
Confidence 3456799999999999999997654
No 265
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=34.61 E-value=72 Score=37.98 Aligned_cols=69 Identities=26% Similarity=0.293 Sum_probs=50.2
Q ss_pred EEccCCCCCCceEEEEEEE----eCCCCeeeCCCcEEEEE-cCCeeee--EecCCCeEEEEEeecCCCccCCCCeEEEEe
Q 036766 101 AVVPFMGESITDGTLAKFL----KGPGDRVELDEPIAQIE-TDKVTID--VASPEAGVIKELVAKEGETVEPGTKIAVIS 173 (470)
Q Consensus 101 v~~P~lg~~~~eg~I~~w~----v~~Gd~V~~gd~l~eve-tdK~~~~--i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~ 173 (470)
+.+|.|.... +|. +++||+|..||.+.+|. |.-.+.- ++.-..|+|..| +.+|+ ..+-++++.++
T Consensus 107 ~~~~~l~~~~------~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 107 ISAPALPRDK------KWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE-YTIEEVIAKVK 178 (1017)
T ss_pred CCCCCCCCCC------eeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC-cceeeEEEEEE
Confidence 5678887652 554 67899999999999886 3333444 455568999776 67887 46688999998
Q ss_pred eCCC
Q 036766 174 KSGE 177 (470)
Q Consensus 174 ~~~~ 177 (470)
..+.
T Consensus 179 ~~~g 182 (1017)
T PRK14698 179 TPSG 182 (1017)
T ss_pred cCCC
Confidence 7443
No 266
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=33.28 E-value=34 Score=29.75 Aligned_cols=50 Identities=22% Similarity=0.314 Sum_probs=26.0
Q ss_pred ceEEEEEEEeCCCCeeeCCCcEEEEEcCCeeee---EecCCCeEEEEEeecCCCccCCCCeEE
Q 036766 111 TDGTLAKFLKGPGDRVELDEPIAQIETDKVTID---VASPEAGVIKELVAKEGETVEPGTKIA 170 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~gd~l~evetdK~~~~---i~ap~~G~l~~i~v~eG~~v~~G~~l~ 170 (470)
..|+|.++..++ +|.-...|++.....- |++- .++.|++||.|+.|++|-
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~G-----peLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAG-----PELIVSEGQSVKADQPLT 61 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESS-----S-BS--TT-EETTT-BSB
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCC-----CeEEEcCCCEEecCCccc
Confidence 457787776644 4555556666544221 2221 145688888888888764
No 267
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=32.56 E-value=63 Score=29.56 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=26.6
Q ss_pred eeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEEeeCCC
Q 036766 125 RVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 125 ~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.+++|+-|+.++.. |...-..+.+|+.|..|+.||.+.+...
T Consensus 75 ~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~T~KG 116 (150)
T PF09891_consen 75 LLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVTTRKG 116 (150)
T ss_dssp EE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE-TTS
T ss_pred EECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEEecCc
Confidence 36777778877754 4444668999999999999999987554
No 268
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=31.65 E-value=92 Score=34.66 Aligned_cols=55 Identities=33% Similarity=0.447 Sum_probs=41.4
Q ss_pred eCCCCeeeCCCcEEEE-EcCCeeee--EecCCCeEEEEEeecCCCccCCCCeEEEEeeCC
Q 036766 120 KGPGDRVELDEPIAQI-ETDKVTID--VASPEAGVIKELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 120 v~~Gd~V~~gd~l~ev-etdK~~~~--i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+++||.|..||.+++| ||.-.+.. ++.-..|+|..+ +.+|+ ..+.++++.++..+
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~-~~~~~~v~~~~~~g 178 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD-YTVEDTIAVVDTDG 178 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC-ceeeeeEEEEecCC
Confidence 7899999999999988 45444444 344569999775 67777 56788999998633
No 269
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=31.35 E-value=65 Score=31.19 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEccCCCCCCceEEEEEEEeCCCCeeeCCCcEEEEE
Q 036766 100 DAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIE 136 (470)
Q Consensus 100 ~v~~P~lg~~~~eg~I~~w~v~~Gd~V~~gd~l~eve 136 (470)
.|+-| ..|.|..+++.+|+.|..|++|+.|-
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 45666 57999999999999999999999875
No 270
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=31.00 E-value=53 Score=34.54 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.6
Q ss_pred ceEEEEEEE-------eCCCCeeeCCCcEE
Q 036766 111 TDGTLAKFL-------KGPGDRVELDEPIA 133 (470)
Q Consensus 111 ~eg~I~~w~-------v~~Gd~V~~gd~l~ 133 (470)
..|.|+++. |++||.|++||+|.
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLI 225 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLI 225 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEE
Confidence 568888775 68999999999997
No 271
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=30.62 E-value=86 Score=33.39 Aligned_cols=44 Identities=30% Similarity=0.427 Sum_probs=34.6
Q ss_pred EEEcCCeeeeEecCCCeEEEEE-------------------------------eecCCCccCCCCeEEEEeeCCC
Q 036766 134 QIETDKVTIDVASPEAGVIKEL-------------------------------VAKEGETVEPGTKIAVISKSGE 177 (470)
Q Consensus 134 evetdK~~~~i~ap~~G~l~~i-------------------------------~v~eG~~v~~G~~l~~i~~~~~ 177 (470)
.+..-+-..+|.|..+|+|.++ +.+.||.|++|++|+.|..+.+
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge~Vk~Gd~l~tiya~~~ 403 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGEKVKKGDPLATIYAESE 403 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCCeeccCCeEEEEecCCc
Confidence 4445667777888888887776 6788999999999999987443
No 272
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=29.70 E-value=1.6e+02 Score=27.65 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=38.0
Q ss_pred eEEEEEEEeCCCCeee--------CCCc-EEEEEcCCeeeeEecCCCeEE-EEE--eecCCCccCCCCeEEEEeeCC
Q 036766 112 DGTLAKFLKGPGDRVE--------LDEP-IAQIETDKVTIDVASPEAGVI-KEL--VAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~--------~gd~-l~evetdK~~~~i~ap~~G~l-~~i--~v~eG~~v~~G~~l~~i~~~~ 176 (470)
+|+|.+....+|+... +++- ++.+||+...+-+.. ..|.+ .++ .+++|+.++.|+.++.+.-..
T Consensus 80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~v~kGeeiG~f~fGS 155 (189)
T TIGR00164 80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEKVSRGQRIGMIRFGS 155 (189)
T ss_pred ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCEEecCcEEEEEecCC
Confidence 5777777677775322 3443 357777643333221 22322 223 467899999999999987653
No 273
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=27.66 E-value=5.1e+02 Score=31.26 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCccceeechhhHHHHHHHHHhcccCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCcc
Q 036766 238 KERERRVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPII 317 (470)
Q Consensus 238 ~~~~~~~pls~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~l 317 (470)
.......|+|..|+.+.-.-... ..-+.|.+..-++++.-...-+ +-+|+...+.+||.|
T Consensus 2 ~~~~~~~Pls~~Q~~lw~~~~~~-~~~~~yn~~~~~~l~g~ld~~~-------------------l~~Al~~lv~rh~~L 61 (1296)
T PRK10252 2 EPMSQHLPLVAAQPGIWMAEKLS-PLPSAWSVAHYVELTGELDAPL-------------------LARAVVAGLAEADTL 61 (1296)
T ss_pred CCccCCCCCCHHHHHHHHHHHhC-CCCCceeeeEEEEEeCCCCHHH-------------------HHHHHHHHHHhccce
Q ss_pred ceEEeCCeEEEeecccEEEEEecCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCCCCCCcCCCCeEEEEeCCCCCCC
Q 036766 318 NAVIDGDDIIYRDYIDISIAVGTSKGLVVPVIRNADKMNFADIEKEINTLAKKANDGSISIDEMAGGSFTISNGGVYGSL 397 (470)
Q Consensus 318 N~~i~~~~i~~~~~i~igiAV~~~~GL~vpvI~~a~~~sl~ei~~~i~~l~~~ar~g~l~~~d~~ggtftISnlG~~G~~ 397 (470)
|.++..+.-.....++ +....+.+...+-....+-...+.+++++.... .|...
T Consensus 62 Rt~f~~~~g~~~q~v~--------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------------~fdl~ 115 (1296)
T PRK10252 62 RMRFTEDNGEVWQWVD--------PALTFPLPEIIDLRTQPDPHAAAQALMQADLQQ------------------DLRVD 115 (1296)
T ss_pred EEEEEcCCCeEEEEEC--------CCCCCCcCceeecCCCCCHHHHHHHHHHHHhcC------------------CcCCC
Q ss_pred CcccccCCCceeEEEEecceeEEEEeCCeEeEEcEEEEEEEecccccChHHHHHHHHHHHHHhh
Q 036766 398 LSTPIINPPQSAILGMHSIVQRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDVVE 461 (470)
Q Consensus 398 ~~tpii~~p~~aIl~vG~i~~~Pvv~~G~i~~r~~m~lsls~DHRviDG~~aa~Fl~~l~~~Le 461 (470)
...|.+ -..++-.+.-... +-+++||-++||+-.+-|+++|.++..
T Consensus 116 ~~~pl~---r~~l~~~~~~~~~---------------l~~~~HHii~DG~S~~~l~~el~~~Y~ 161 (1296)
T PRK10252 116 SGKPLV---FHQLIQLGDNRWY---------------WYQRYHHLLVDGFSFPAITRRIAAIYC 161 (1296)
T ss_pred CCCCCe---EEEEEEEcCCEEE---------------EEEecCceeEccccHHHHHHHHHHHHH
No 274
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=27.33 E-value=34 Score=35.14 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=18.6
Q ss_pred EEEeCCCCeeeCCCcEEEEEc
Q 036766 117 KFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~evet 137 (470)
+++|++||.|++||.|+++-.
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred ccccCCcCEECCCCeEEeEcC
Confidence 457999999999999998875
No 275
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=27.10 E-value=78 Score=38.80 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=31.0
Q ss_pred EEEeCCCCeeeCCCcEEEEEc--------CCeeeeEecCCCeEEE
Q 036766 117 KFLKGPGDRVELDEPIAQIET--------DKVTIDVASPEAGVIK 153 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~evet--------dK~~~~i~ap~~G~l~ 153 (470)
..+|++||.|++||+|||+.. +|+...|-+..+|.|.
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 468999999999999999984 4566788899998754
No 276
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=27.00 E-value=59 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=19.5
Q ss_pred eEEEEEEEeCCCCeeeCCCcEEEEEcC
Q 036766 112 DGTLAKFLKGPGDRVELDEPIAQIETD 138 (470)
Q Consensus 112 eg~I~~w~v~~Gd~V~~gd~l~evetd 138 (470)
.+++ |.+++|+.|.+|++|++||-.
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G~ 93 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEGP 93 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEEc
Confidence 3454 788999999988888888843
No 277
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.88 E-value=61 Score=32.85 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=14.3
Q ss_pred EEEEEe--CCCCeeeCCCcEEEEE
Q 036766 115 LAKFLK--GPGDRVELDEPIAQIE 136 (470)
Q Consensus 115 I~~w~v--~~Gd~V~~gd~l~eve 136 (470)
...|++ ++|+.|++||+|++++
T Consensus 72 ~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 72 TFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred EEEEeecCCCCCEecCCCEEEEEE
Confidence 345665 6677777766666666
No 278
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=26.16 E-value=63 Score=33.73 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=40.3
Q ss_pred EEEEEeCCCCeeeCCCcEEEEEcCCeeee-EecCCCeEEEEEeecCCCccCCCCeEEEEee
Q 036766 115 LAKFLKGPGDRVELDEPIAQIETDKVTID-VASPEAGVIKELVAKEGETVEPGTKIAVISK 174 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~evetdK~~~~-i~ap~~G~l~~i~v~eG~~v~~G~~l~~i~~ 174 (470)
+..|.-..+..|++||.+...+=.-..+- ++++. .+ +..+++|+.|..||.|+.+..
T Consensus 283 ~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~~ 340 (353)
T PTZ00403 283 INTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVGE 340 (353)
T ss_pred ceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccCC
Confidence 34455556779999999998886433332 45654 23 456899999999999987654
No 279
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=25.20 E-value=69 Score=34.06 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=24.8
Q ss_pred CceEEEEEEEeCCCCeeeCCCcEEEEEc
Q 036766 110 ITDGTLAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 110 ~~eg~I~~w~v~~Gd~V~~gd~l~evet 137 (470)
+..+.=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 5566667899999999999999999987
No 280
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=24.52 E-value=87 Score=25.90 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=24.7
Q ss_pred CCCeEEEEEeecC-CCccCCCCeEEEEeeCCC
Q 036766 147 PEAGVIKELVAKE-GETVEPGTKIAVISKSGE 177 (470)
Q Consensus 147 p~~G~l~~i~v~e-G~~v~~G~~l~~i~~~~~ 177 (470)
..-|.|..+.... |+.|..|++|+.|+....
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVESVKA 57 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEEEccE
Confidence 3467787776555 999999999999997654
No 281
>PRK02259 aspartoacylase; Provisional
Probab=24.15 E-value=38 Score=34.12 Aligned_cols=53 Identities=13% Similarity=0.061 Sum_probs=40.5
Q ss_pred EEEeCCC--CeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecCCCccCCCCeEEEE
Q 036766 117 KFLKGPG--DRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVI 172 (470)
Q Consensus 117 ~w~v~~G--d~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~eG~~v~~G~~l~~i 172 (470)
.=.++.| +.|++||+|+.. .|--++.++++.+|+. +.++|...++.|..++.-
T Consensus 229 hp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~~~ 283 (288)
T PRK02259 229 HPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMSLT 283 (288)
T ss_pred chhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhhhh
Confidence 3345556 669999999998 6777888999998887 467777777777766543
No 282
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=23.85 E-value=94 Score=32.73 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.9
Q ss_pred ceEEEEEEE-------eCCCCeeeCCCcEEE
Q 036766 111 TDGTLAKFL-------KGPGDRVELDEPIAQ 134 (470)
Q Consensus 111 ~eg~I~~w~-------v~~Gd~V~~gd~l~e 134 (470)
.+|.|.++. |++||.|++||+|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 568888875 678999999999974
No 283
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=22.43 E-value=86 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=14.0
Q ss_pred EEEEEeCCCCeeeCCCcEEEEEc
Q 036766 115 LAKFLKGPGDRVELDEPIAQIET 137 (470)
Q Consensus 115 I~~w~v~~Gd~V~~gd~l~evet 137 (470)
+..|.+++|+.|..|++|++||-
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEE
Confidence 34566666666666666666653
No 284
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=22.07 E-value=2.2e+02 Score=27.17 Aligned_cols=64 Identities=33% Similarity=0.469 Sum_probs=38.5
Q ss_pred ceEEEEEEEeCCCCeeeC--------CC-cEEEEEcCCee-eeEecCCCeEE-EEE--eecCCCccCCCCeEEEEeeC
Q 036766 111 TDGTLAKFLKGPGDRVEL--------DE-PIAQIETDKVT-IDVASPEAGVI-KEL--VAKEGETVEPGTKIAVISKS 175 (470)
Q Consensus 111 ~eg~I~~w~v~~Gd~V~~--------gd-~l~evetdK~~-~~i~ap~~G~l-~~i--~v~eG~~v~~G~~l~~i~~~ 175 (470)
-+|+|.++...+|+.... ++ .+..+||++.. +.+ ....|.+ .++ .+++|+.+..|+.++.+.-.
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~-~~i~~~~~r~I~~~~~~g~~v~kGe~~G~f~fG 174 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGV-VQIAGLIARRIVCYVKEGDEVERGERFGLIRFG 174 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEE-EEeCeEEccEEEEeCCCCCEEccCcEEeEEecC
Confidence 468888888888874443 23 33466665321 221 1222322 222 46889999999999998755
No 285
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=21.13 E-value=62 Score=25.82 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=30.0
Q ss_pred EEeCCCCeeeCCCcEEEEEcCCeeeeEecCCCeEEEEEeecC----------CCccCCCCeEE
Q 036766 118 FLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKE----------GETVEPGTKIA 170 (470)
Q Consensus 118 w~v~~Gd~V~~gd~l~evetdK~~~~i~ap~~G~l~~i~v~e----------G~~v~~G~~l~ 170 (470)
|..++||.| .|. +.++..+...+++.....|.|..-.+.. .+.+.+||.+-
T Consensus 2 y~p~~GdiV-~g~-V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~ 62 (86)
T cd05789 2 YIPEVGDVV-IGR-VTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIV 62 (86)
T ss_pred CcCCCCCEE-EEE-EEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEE
Confidence 444566666 222 2334555677778778888886543332 12478888654
No 286
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=20.94 E-value=54 Score=32.01 Aligned_cols=27 Identities=30% Similarity=0.262 Sum_probs=25.6
Q ss_pred EEEeCCCCeeeCCCcEEEEEcCCeeee
Q 036766 117 KFLKGPGDRVELDEPIAQIETDKVTID 143 (470)
Q Consensus 117 ~w~v~~Gd~V~~gd~l~evetdK~~~~ 143 (470)
.|++.+|..+++=+..|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999999887
No 287
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=20.59 E-value=2.9e+02 Score=20.21 Aligned_cols=48 Identities=15% Similarity=0.099 Sum_probs=31.4
Q ss_pred cCcceEEEEeeeechHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhhCCccc
Q 036766 262 NTFAMLTTFNEVDMTNLMKLRSEYKDAFLEKHGVKLGLMSGFVKAAVSGLQNQPIIN 318 (470)
Q Consensus 262 ~~iP~~~~~~evDvt~L~~~rk~~~~~~~~~~g~k~s~~~~lvkA~a~Al~~~P~lN 318 (470)
++.++|++-.+-++-+.++.+.+. . .-|++.-++.++-.+|.+...++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~-------~--gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEE-------N--GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHH-------T--TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred CCCCceeeECCHHHHHHHHHHHHH-------h--CCChHHHHHHHHHHHHhccccCC
Confidence 346788877666544443333222 2 45999999999999999876654
No 288
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.23 E-value=1.3e+02 Score=30.40 Aligned_cols=23 Identities=30% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEeecCCCccCCCCeEEEEeeCC
Q 036766 154 ELVAKEGETVEPGTKIAVISKSG 176 (470)
Q Consensus 154 ~i~v~eG~~v~~G~~l~~i~~~~ 176 (470)
...+++|+.+++|++|+.++...
T Consensus 67 ~~~~~DG~~v~~g~~i~~~~G~a 89 (280)
T COG0157 67 QWLVKDGDRVKPGDVLAEIEGPA 89 (280)
T ss_pred EEEcCCCCEeCCCCEEEEEeccH
Confidence 45899999999999999997543
Done!