BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036769
         (306 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
 pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
           Mycobacterium Smegmatis
          Length = 453

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 52  NRIFRGDRNSDSISFSEPSYPVKNSSQLPDTLALYQTARVFDQSSHYEFDISSNGTHLVR 111
           NR+  GD    +  F+  +  V+N+ ++       Q   VFD + H   +++   T   +
Sbjct: 121 NRLTPGDHEKRTALFNSGAEAVENAVKIARAYTRRQAVVVFDHAYHGRTNLTMAMTAKNQ 180

Query: 112 LHFFAFSSAKNLYNAVFNVSTSHPF 136
            +   F       N V+ V TS+PF
Sbjct: 181 PYKHGFGP---FANEVYRVPTSYPF 202


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,820,375
Number of Sequences: 62578
Number of extensions: 364622
Number of successful extensions: 687
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 4
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)