Query 036770
Match_columns 1061
No_of_seqs 304 out of 1401
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 05:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5101 CRM1 Importin beta-rel 100.0 2E-170 5E-175 1368.1 95.2 1008 3-1024 1-1036(1053)
2 KOG2020 Nuclear transport rece 100.0 2E-110 4E-115 1001.1 79.9 1020 6-1050 2-1041(1041)
3 KOG2021 Nuclear mRNA export fa 100.0 3.8E-70 8.2E-75 603.4 66.6 903 16-1017 3-978 (980)
4 KOG2022 Nuclear transport rece 100.0 1.7E-59 3.7E-64 530.1 82.9 894 13-1020 4-979 (982)
5 PF08767 CRM1_C: CRM1 C termin 100.0 5.9E-51 1.3E-55 447.7 35.6 302 713-1020 1-319 (319)
6 KOG2081 Nuclear transport regu 100.0 5.4E-47 1.2E-51 414.7 47.0 546 35-666 2-555 (559)
7 KOG2023 Nuclear transport rece 100.0 5.8E-46 1.3E-50 407.0 40.9 698 14-918 8-753 (885)
8 KOG1241 Karyopherin (importin) 100.0 7.4E-32 1.6E-36 302.0 62.9 646 21-818 6-688 (859)
9 KOG1410 Nuclear transport rece 100.0 6.6E-29 1.4E-33 272.5 74.0 805 14-892 3-938 (1082)
10 KOG2171 Karyopherin (importin) 100.0 2.2E-26 4.7E-31 271.8 69.9 716 14-895 2-766 (1075)
11 COG5215 KAP95 Karyopherin (imp 100.0 2.5E-23 5.5E-28 225.7 61.2 660 27-845 16-710 (858)
12 KOG1991 Nuclear transport rece 99.9 6E-17 1.3E-21 188.6 67.0 577 13-707 1-630 (1010)
13 PF08389 Xpo1: Exportin 1-like 99.9 1.9E-21 4.2E-26 192.6 16.2 145 114-258 1-148 (148)
14 KOG1992 Nuclear export recepto 99.8 2.9E-14 6.2E-19 162.7 63.5 720 14-868 3-820 (960)
15 KOG2274 Predicted importin 9 [ 99.7 2.4E-12 5.2E-17 148.9 57.2 141 20-170 8-160 (1005)
16 KOG1993 Nuclear transport rece 99.6 1.7E-10 3.6E-15 131.8 51.8 170 19-205 3-182 (978)
17 KOG2171 Karyopherin (importin) 99.6 1.6E-08 3.5E-13 121.7 64.4 361 461-853 365-769 (1075)
18 COG5656 SXM1 Importin, protein 99.6 4.5E-08 9.8E-13 111.6 64.2 186 30-226 16-211 (970)
19 COG5657 CSE1 CAS/CSE protein i 99.3 7.4E-08 1.6E-12 112.9 44.2 204 30-252 17-246 (947)
20 PF03810 IBN_N: Importin-beta 98.8 1E-08 2.2E-13 88.5 8.4 66 37-102 1-76 (77)
21 KOG4541 Nuclear transport rece 98.6 4.4E-05 9.6E-10 84.8 28.0 310 568-895 295-632 (748)
22 KOG1241 Karyopherin (importin) 98.3 0.00087 1.9E-08 78.1 31.7 285 494-816 420-729 (859)
23 KOG2023 Nuclear transport rece 98.1 0.042 9.1E-07 63.5 37.4 284 564-893 389-693 (885)
24 KOG1824 TATA-binding protein-i 98.1 0.063 1.4E-06 64.5 60.0 293 56-435 9-314 (1233)
25 KOG0915 Uncharacterized conser 97.5 0.38 8.2E-06 61.2 36.2 130 491-630 1049-1185(1702)
26 KOG0213 Splicing factor 3b, su 97.5 0.36 7.9E-06 56.7 33.3 302 498-846 493-828 (1172)
27 PF08506 Cse1: Cse1; InterPro 97.5 0.04 8.6E-07 62.5 25.9 171 414-592 182-370 (370)
28 PF01602 Adaptin_N: Adaptin N 97.4 0.58 1.3E-05 56.7 40.4 184 27-246 52-241 (526)
29 KOG1824 TATA-binding protein-i 97.3 0.8 1.7E-05 55.6 55.3 120 114-249 187-312 (1233)
30 COG5215 KAP95 Karyopherin (imp 97.2 0.64 1.4E-05 53.2 30.3 281 495-815 422-728 (858)
31 KOG1059 Vesicle coat complex A 96.9 1.4 3.1E-05 52.1 34.4 144 90-266 142-286 (877)
32 PF03378 CAS_CSE1: CAS/CSE pro 96.7 0.85 1.8E-05 53.0 27.3 304 565-921 23-351 (435)
33 KOG2021 Nuclear mRNA export fa 96.4 3.2 6.9E-05 49.5 32.3 325 542-894 208-567 (980)
34 PTZ00429 beta-adaptin; Provisi 96.4 4.4 9.5E-05 50.4 43.6 132 19-168 71-209 (746)
35 KOG0212 Uncharacterized conser 95.7 5.7 0.00012 46.0 26.7 272 565-895 81-369 (675)
36 PF10508 Proteasom_PSMB: Prote 95.7 4 8.6E-05 48.9 26.4 159 472-646 70-231 (503)
37 PF10508 Proteasom_PSMB: Prote 95.3 8.8 0.00019 46.0 38.0 310 494-894 51-369 (503)
38 cd00020 ARM Armadillo/beta-cat 94.8 0.15 3.2E-06 47.6 8.7 111 475-597 7-120 (120)
39 PF12755 Vac14_Fab1_bd: Vacuol 94.7 0.12 2.6E-06 46.3 7.3 59 563-629 22-80 (97)
40 KOG1242 Protein containing ada 94.1 16 0.00034 43.2 25.2 263 558-879 86-350 (569)
41 PF02985 HEAT: HEAT repeat; I 93.8 0.1 2.2E-06 35.7 3.8 31 569-599 1-31 (31)
42 COG5181 HSH155 U2 snRNP splice 93.6 6 0.00013 46.1 19.3 133 499-650 299-432 (975)
43 PF13513 HEAT_EZ: HEAT-like re 92.7 0.27 5.8E-06 38.8 5.3 54 495-554 1-54 (55)
44 PF01602 Adaptin_N: Adaptin N 91.9 36 0.00077 41.1 37.9 146 479-650 79-225 (526)
45 KOG1242 Protein containing ada 91.7 34 0.00073 40.6 32.1 103 540-654 150-253 (569)
46 PF08767 CRM1_C: CRM1 C termin 91.6 4.2 9.2E-05 45.4 15.1 148 212-373 43-198 (319)
47 KOG1062 Vesicle coat complex A 91.6 40 0.00087 41.1 32.3 96 159-266 73-174 (866)
48 PF03378 CAS_CSE1: CAS/CSE pro 90.8 13 0.00028 43.4 18.4 115 786-916 134-249 (435)
49 KOG0166 Karyopherin (importin) 90.3 0.59 1.3E-05 54.2 6.7 138 494-647 165-309 (514)
50 KOG1943 Beta-tubulin folding c 89.9 9.4 0.0002 47.7 16.6 139 498-647 445-612 (1133)
51 PF12348 CLASP_N: CLASP N term 89.5 11 0.00024 39.8 15.5 139 492-649 18-163 (228)
52 PF12755 Vac14_Fab1_bd: Vacuol 88.7 3.9 8.4E-05 36.7 9.4 86 499-590 4-90 (97)
53 KOG0166 Karyopherin (importin) 88.5 15 0.00032 43.0 16.2 163 475-652 233-399 (514)
54 PRK09687 putative lyase; Provi 87.6 29 0.00064 37.9 17.4 217 17-263 24-250 (280)
55 PF12460 MMS19_C: RNAPII trans 86.3 57 0.0012 38.0 20.0 189 62-264 202-395 (415)
56 PF12348 CLASP_N: CLASP N term 85.5 13 0.00028 39.3 13.1 136 499-650 71-210 (228)
57 PF13513 HEAT_EZ: HEAT-like re 85.2 2.4 5.3E-05 33.3 5.6 47 546-595 5-55 (55)
58 COG5181 HSH155 U2 snRNP splice 84.0 99 0.0022 36.7 24.9 306 517-889 598-910 (975)
59 PF08167 RIX1: rRNA processing 82.1 29 0.00063 34.6 13.1 115 137-266 23-146 (165)
60 PF12717 Cnd1: non-SMC mitotic 80.8 21 0.00045 36.1 11.8 23 576-598 71-93 (178)
61 KOG1991 Nuclear transport rece 80.7 1.7E+02 0.0036 37.0 51.7 30 235-266 92-121 (1010)
62 KOG1062 Vesicle coat complex A 80.5 1.5E+02 0.0033 36.4 27.7 107 475-598 103-209 (866)
63 KOG1059 Vesicle coat complex A 79.8 1.5E+02 0.0033 36.0 34.2 50 556-605 169-218 (877)
64 KOG2956 CLIP-associating prote 78.9 1.3E+02 0.0028 34.7 18.1 150 551-735 316-467 (516)
65 PRK09687 putative lyase; Provi 78.4 72 0.0016 34.9 15.8 140 468-644 47-186 (280)
66 COG5064 SRP1 Karyopherin (impo 76.1 9.8 0.00021 41.2 7.7 100 494-598 170-273 (526)
67 KOG2022 Nuclear transport rece 75.9 2.2E+02 0.0047 35.6 39.7 72 192-263 505-576 (982)
68 cd00020 ARM Armadillo/beta-cat 74.9 10 0.00022 34.9 7.1 32 568-599 49-80 (120)
69 KOG0213 Splicing factor 3b, su 74.4 2.2E+02 0.0047 34.9 41.2 136 501-650 778-916 (1172)
70 PLN03200 cellulose synthase-in 73.4 4E+02 0.0086 37.5 55.7 222 15-264 12-262 (2102)
71 PF13251 DUF4042: Domain of un 72.2 42 0.00091 33.9 10.9 78 187-265 93-176 (182)
72 PF11864 DUF3384: Domain of un 70.7 1.6E+02 0.0036 34.8 17.4 50 49-103 28-77 (464)
73 PF13646 HEAT_2: HEAT repeats; 70.2 36 0.00079 29.3 9.1 44 544-596 16-59 (88)
74 PF11229 DUF3028: Protein of u 68.4 1.3E+02 0.0028 35.1 14.6 205 78-323 139-354 (589)
75 COG5096 Vesicle coat complex, 65.3 1.5E+02 0.0032 36.9 15.4 124 28-168 66-196 (757)
76 PF01603 B56: Protein phosphat 64.8 90 0.002 36.3 13.3 224 12-264 129-371 (409)
77 PF10521 DUF2454: Protein of u 63.6 2.3E+02 0.005 31.0 16.9 159 546-723 98-272 (282)
78 smart00802 UME Domain in UVSB 63.1 89 0.0019 28.6 10.1 91 568-669 11-105 (107)
79 PF02985 HEAT: HEAT repeat; I 62.0 9 0.0002 26.0 2.7 27 237-263 1-29 (31)
80 COG5240 SEC21 Vesicle coat com 61.9 3.3E+02 0.0072 32.3 19.0 211 14-263 300-516 (898)
81 PLN03076 ARF guanine nucleotid 61.0 6.4E+02 0.014 35.3 27.2 103 789-895 1367-1493(1780)
82 PF00514 Arm: Armadillo/beta-c 60.0 17 0.00038 26.4 4.2 28 569-596 13-40 (41)
83 PF04826 Arm_2: Armadillo-like 59.9 2.5E+02 0.0054 30.2 17.6 142 13-167 9-163 (254)
84 PF13646 HEAT_2: HEAT repeats; 59.1 27 0.00058 30.1 6.1 44 30-75 13-56 (88)
85 COG5064 SRP1 Karyopherin (impo 58.8 17 0.00038 39.4 5.4 100 494-598 256-357 (526)
86 PF08064 UME: UME (NUC010) dom 58.6 1.1E+02 0.0024 28.0 10.0 72 192-264 8-84 (107)
87 PF05804 KAP: Kinesin-associat 57.8 4.7E+02 0.01 32.7 36.5 215 13-263 120-360 (708)
88 KOG1240 Protein kinase contain 57.1 5.7E+02 0.012 33.5 18.6 212 30-265 436-687 (1431)
89 smart00802 UME Domain in UVSB 56.2 1.2E+02 0.0026 27.8 9.7 30 235-264 55-84 (107)
90 PLN03076 ARF guanine nucleotid 55.6 1E+02 0.0022 42.4 12.9 95 788-889 1202-1297(1780)
91 PF08623 TIP120: TATA-binding 54.5 31 0.00066 34.4 6.0 82 805-893 4-96 (169)
92 PF08064 UME: UME (NUC010) dom 53.7 1.6E+02 0.0035 26.8 10.3 77 582-669 29-105 (107)
93 PF10274 ParcG: Parkin co-regu 51.8 1.3E+02 0.0027 30.5 9.9 97 613-727 38-134 (183)
94 PF12460 MMS19_C: RNAPII trans 51.3 4.5E+02 0.0098 30.6 34.7 77 814-893 319-396 (415)
95 PF14225 MOR2-PAG1_C: Cell mor 47.6 1.4E+02 0.003 32.3 10.2 72 193-266 186-257 (262)
96 smart00288 VHS Domain present 46.8 2.3E+02 0.005 27.0 10.6 99 20-125 3-106 (133)
97 PF13251 DUF4042: Domain of un 45.8 1.3E+02 0.0028 30.5 9.0 88 577-664 49-149 (182)
98 PF01603 B56: Protein phosphat 44.7 4.7E+02 0.01 30.3 14.9 186 138-366 132-323 (409)
99 PF00790 VHS: VHS domain; Int 44.2 3E+02 0.0065 26.4 13.1 64 17-80 5-72 (140)
100 PF13001 Ecm29: Proteasome sta 43.8 1.5E+02 0.0032 35.6 10.8 93 566-665 317-423 (501)
101 KOG1820 Microtubule-associated 43.7 1.8E+02 0.0039 36.8 11.6 134 501-651 315-448 (815)
102 PF04078 Rcd1: Cell differenti 42.4 4.6E+02 0.01 28.1 13.7 71 579-665 24-95 (262)
103 PF12783 Sec7_N: Guanine nucle 42.1 2E+02 0.0043 28.6 10.0 91 551-646 49-146 (168)
104 KOG1967 DNA repair/transcripti 41.3 2E+02 0.0043 36.1 11.0 127 118-260 888-1021(1030)
105 KOG0212 Uncharacterized conser 40.9 7E+02 0.015 29.8 24.1 223 12-265 162-408 (675)
106 PLN03200 cellulose synthase-in 40.4 1.3E+03 0.028 32.8 45.8 100 496-600 666-767 (2102)
107 cd00197 VHS_ENTH_ANTH VHS, ENT 39.2 2.3E+02 0.0051 26.0 9.3 88 35-126 19-111 (115)
108 PF10274 ParcG: Parkin co-regu 39.2 1.9E+02 0.004 29.3 8.8 92 567-666 37-130 (183)
109 PTZ00429 beta-adaptin; Provisi 38.5 9.2E+02 0.02 30.5 42.3 107 520-643 137-245 (746)
110 PF08167 RIX1: rRNA processing 38.4 4.1E+02 0.0089 26.3 13.0 80 564-650 21-101 (165)
111 COG5240 SEC21 Vesicle coat com 38.2 7.7E+02 0.017 29.5 18.8 88 565-665 372-459 (898)
112 smart00185 ARM Armadillo/beta- 38.0 41 0.00089 23.9 3.2 28 569-596 13-40 (41)
113 PF11698 V-ATPase_H_C: V-ATPas 38.0 1.3E+02 0.0027 28.2 6.9 50 548-597 64-115 (119)
114 PF14668 RICTOR_V: Rapamycin-i 37.3 65 0.0014 27.1 4.5 51 497-554 3-55 (73)
115 KOG1061 Vesicle coat complex A 37.0 1.6E+02 0.0035 36.1 9.4 58 208-266 133-192 (734)
116 PF14664 RICTOR_N: Rapamycin-i 35.7 7.2E+02 0.016 28.4 17.4 223 124-368 6-268 (371)
117 KOG1967 DNA repair/transcripti 35.1 3E+02 0.0065 34.7 11.2 123 518-651 862-987 (1030)
118 PF09324 DUF1981: Domain of un 34.7 2.4E+02 0.0053 24.5 7.9 55 829-887 30-84 (86)
119 KOG2011 Sister chromatid cohes 34.4 1.3E+02 0.0029 38.5 8.4 78 829-912 299-376 (1048)
120 cd03567 VHS_GGA VHS domain fam 34.1 3.1E+02 0.0067 26.4 9.3 48 34-81 19-69 (139)
121 cd03562 CID CID (CTD-Interacti 33.7 1.9E+02 0.004 26.6 7.6 49 556-604 25-73 (114)
122 KOG1240 Protein kinase contain 33.6 1.3E+03 0.027 30.6 18.5 181 495-705 480-686 (1431)
123 KOG2753 Uncharacterized conser 33.5 7.1E+02 0.015 27.7 15.8 84 932-1035 125-208 (378)
124 KOG1820 Microtubule-associated 32.3 9.7E+02 0.021 30.5 15.4 64 829-894 383-446 (815)
125 KOG1061 Vesicle coat complex A 29.5 1.2E+03 0.026 29.0 19.6 37 565-601 236-272 (734)
126 cd03561 VHS VHS domain family; 29.2 3E+02 0.0065 26.1 8.4 87 35-126 19-108 (133)
127 KOG0915 Uncharacterized conser 28.6 1.6E+03 0.036 30.4 43.7 94 491-598 1214-1307(1702)
128 PF05918 API5: Apoptosis inhib 26.4 1.2E+03 0.026 28.2 23.9 263 29-321 34-344 (556)
129 KOG1248 Uncharacterized conser 26.4 1.6E+03 0.035 29.5 55.7 666 189-982 87-920 (1176)
130 cd03561 VHS VHS domain family; 26.1 1.5E+02 0.0033 28.2 5.8 38 568-605 37-74 (133)
131 PF05327 RRN3: RNA polymerase 25.8 3.4E+02 0.0075 33.0 10.0 69 789-875 56-124 (563)
132 PF11698 V-ATPase_H_C: V-ATPas 25.7 2.3E+02 0.005 26.4 6.5 69 14-83 41-119 (119)
133 PF12333 Ipi1_N: Rix1 complex 25.7 2.9E+02 0.0062 25.0 7.1 58 859-921 8-65 (102)
134 cd03569 VHS_Hrs_Vps27p VHS dom 25.1 1.9E+02 0.004 28.0 6.1 38 568-605 41-78 (142)
135 PF08146 BP28CT: BP28CT (NUC21 25.0 6.6E+02 0.014 24.6 10.7 61 787-850 39-100 (153)
136 cd03567 VHS_GGA VHS domain fam 24.9 2.6E+02 0.0057 26.9 7.0 38 568-605 38-75 (139)
137 PF12783 Sec7_N: Guanine nucle 24.1 5.1E+02 0.011 25.6 9.4 100 63-167 35-146 (168)
138 PF12295 Symplekin_C: Sympleki 23.1 2.4E+02 0.0052 28.6 6.7 69 789-865 112-180 (183)
139 cd03568 VHS_STAM VHS domain fa 23.0 2.7E+02 0.0059 27.0 6.8 107 556-668 25-131 (144)
140 PF04118 Dopey_N: Dopey, N-ter 22.5 1.1E+03 0.023 26.2 15.9 114 780-908 66-180 (307)
141 PF03224 V-ATPase_H_N: V-ATPas 22.0 1.1E+03 0.024 26.0 15.8 192 39-253 93-304 (312)
142 PF04118 Dopey_N: Dopey, N-ter 21.4 1.1E+03 0.025 26.0 15.1 57 829-888 184-251 (307)
143 PF12530 DUF3730: Protein of u 21.4 9.7E+02 0.021 25.2 22.1 135 27-167 11-151 (234)
144 KOG1060 Vesicle coat complex A 20.7 1.5E+03 0.032 28.5 13.2 179 58-281 295-475 (968)
145 PF08389 Xpo1: Exportin 1-like 20.3 1E+02 0.0022 29.5 3.5 69 521-592 80-148 (148)
No 1
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.3e-170 Score=1368.14 Aligned_cols=1008 Identities=43% Similarity=0.730 Sum_probs=947.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770 3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
||.||+|+.++|++.++++|..+|.|.+. +++||+++|.+||+.|+||+.+++||..|..++.+|.|+++|+..|.++|
T Consensus 1 MEgIL~fd~dLdiallDkVVttfyqg~g~-~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkW 79 (1053)
T COG5101 1 MEGILEFDKDLDIALLDKVVTTFYQGDGR-KQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKW 79 (1053)
T ss_pred CcchhhcccccCHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhh
Confidence 89999999999999999999999999665 88999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770 83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL 162 (1061)
Q Consensus 83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL 162 (1061)
+-+|.++|.+||+++++.++..++++.....++++.||+..+++.|++++||.+||+||+++++.++.+...|+++|.+|
T Consensus 80 kllp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~s~~vCeNnmivL 159 (1053)
T COG5101 80 KLLPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQISMEVCENNMIVL 159 (1053)
T ss_pred hhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccchHHHHhccHHHH
Confidence 99999999999999999999988888878889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH
Q 036770 163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL 242 (1061)
Q Consensus 163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~ 242 (1061)
+.|+|||++++.+++++.|++.+|.+|..++++||.+|.++|+.+.+++++.++|..+..|+.|+|+++++++++++++.
T Consensus 160 klLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yIfeTnIieLv~ 239 (1053)
T COG5101 160 KLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYIFETNIIELVL 239 (1053)
T ss_pred HHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hhCCCccchHHHHHHHHHHhcCcCCcchH----HHHHHHHHHHHHHHH-hhCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 243 -KFFPMPSYRNLTLQCLTEVGALNFGDFYN----VQYVNMYNVFMVQLQ-TILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 243 -~~L~~~~~~~~a~~cL~ei~~~~~~~~~~----~~~~~~f~~~l~~l~-~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
++++.|++|.++++||+||++++..|.+. ..+.-.|+.++.... ...|...++.++|+..+..|+.|++++|.|
T Consensus 240 ~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~f 319 (1053)
T COG5101 240 EHFNSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQF 319 (1053)
T ss_pred HHhccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHH
Confidence 78889999999999999999987444332 345556665555544 467778889999998888899999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccC----CCCC
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMM----GLPM 392 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~----g~~~ 392 (1061)
++++.+.|..++|+.. ..+.+..++.||++++.+++.|+|+.|+|||+.++.++|.+.+..|..+. +|++ |...
T Consensus 320 L~s~~~~~~~lLE~~e-~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem-~Pli~ls~~s~~ 397 (1053)
T COG5101 320 LSSLYEVYISLLEARE-MAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEM-SPLIQLSVGSQA 397 (1053)
T ss_pred HHHHHHHHHHHhcChh-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-Ccchhccccchh
Confidence 9999999999999864 45667799999999999999999999999999999999999988887654 5643 2211
Q ss_pred C-CCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 393 P-LLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 393 ~-~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
+ .+|...++ .+.|++.|..++++|+.+++++|.+|+||+++++|+||.+|++.+|+|++.+|++||++|+||||+
T Consensus 398 istnpn~~~~----~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL 473 (1053)
T COG5101 398 ISTNPNQDST----KPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHL 473 (1053)
T ss_pred ccCCcchhcc----cchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhh
Confidence 0 01333333 388999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV 551 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ 551 (1061)
+..|+..+|.+++..+++|.+|+|++++++|||+|||||+|.++.|++|++.++++|+.||+.++||++|+++||+|||+
T Consensus 474 ~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv 553 (1053)
T COG5101 474 IVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV 553 (1053)
T ss_pred hhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCc
Q 036770 552 VGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEP 631 (1061)
Q Consensus 552 ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~ 631 (1061)
+||||||+++||.||++|++|||+|||+.|+||++|||++|.+|+++|+.||+.+++||.+||+..|+++++.++++|.+
T Consensus 554 vGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 554 VGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770 632 HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711 (1061)
Q Consensus 632 ~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~ 711 (1061)
.+.+.+|||+|.+|+.+|....+.+++-.+|+.+++.|..+..++..++..+.|+..++...+.+++++..|.++|..|.
T Consensus 634 qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fy 713 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFY 713 (1053)
T ss_pred HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999998888899999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------
Q 036770 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI--------------- 776 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l--------------- 776 (1061)
|+....|-.++..|...+..|...++..|-.+++.|.+|.+|++|++|++++.+|+++..++..+
T Consensus 714 Pq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~l~eaVl~D 793 (1053)
T COG5101 714 PQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNMLCEAVLFD 793 (1053)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988775433
Q ss_pred hhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC
Q 036770 777 GKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS 856 (1061)
Q Consensus 777 ~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~ 856 (1061)
+.+++|++|++++|+|++++|.+.++.+....+.++..+|.||+.|+.+|+.+|||||.+||.|+..++..||.++++.|
T Consensus 794 Y~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~svf~ctl~mi~kdf~EypEhr~~f~~Ll~~inl~sF~afl~~p 873 (1053)
T COG5101 794 YKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLISVFICTLIMIVKDFDEYPEHRKNFLLLLENINLFSFSAFLSFP 873 (1053)
T ss_pred HhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 22388999999999999999999998888888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHH
Q 036770 857 SQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVL 934 (1061)
Q Consensus 857 ~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L 934 (1061)
++.|+.++++++|+++|-.|++++.||+++..+++++.. ..++++||++||+.++..++.++||+.|++||++|+.+|
T Consensus 874 ~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Lll 953 (1053)
T COG5101 874 QPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLL 953 (1053)
T ss_pred cHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHeeeeccchhccchHHHHHH
Confidence 999999999999999999999999999999999999865 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhh
Q 036770 935 QHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQ 1014 (1061)
Q Consensus 935 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~ 1014 (1061)
+.++++++.|+|++|+|+. |..|..++++|+.+++.++|||++++++..|..+|+..++|..-||.|++||.++
T Consensus 954 a~li~lv~dnkisVPlyd~------~~~n~~~lseyi~~l~~~sfp~it~e~v~~f~~~l~~~~~d~~ifk~~~~df~vk 1027 (1053)
T COG5101 954 AFLIRLVKDNKISVPLYDG------INPNITILSEYIVGLFVKSFPNITQESVKIFSVGLFELCGDDEIFKEHVEDFRVK 1027 (1053)
T ss_pred HHHHHHHhccccccccccC------CCCchhhHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 9999999999999999995 4588999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCh
Q 036770 1015 SKEFSAQDNK 1024 (1061)
Q Consensus 1015 ~k~~~~~~~~ 1024 (1061)
.+|||| |++
T Consensus 1028 v~e~g~-d~~ 1036 (1053)
T COG5101 1028 VYEFGT-DED 1036 (1053)
T ss_pred eeeeCC-Ccc
Confidence 999977 887
No 2
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-110 Score=1001.11 Aligned_cols=1020 Identities=54% Similarity=0.867 Sum_probs=933.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 6 LRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 6 ~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
++| +++.|++.+++.+..+|..++.+.|.+|+++|.+||..|++|..|..+|..++++.+||||+|+|++.|+++|+.+
T Consensus 2 ~~~-~~~l~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~ 80 (1041)
T KOG2020|consen 2 LLD-DNKLDSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSL 80 (1041)
T ss_pred Ccc-chhHHHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccC
Confidence 577 8888999999999998875677799999999999999999999999999998999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLL 165 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l 165 (1061)
|.++|.++|+++++.+...+++....+..+++++|++.++++|+|++||+.||+|++++.+.++.++..|++++.+|+.|
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~~~el~m~Il~lL 160 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSETVCELSMIILLLL 160 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcccchHHHHHHHHH
Confidence 99999999999999998876666556678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH-hh
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL-KF 244 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~-~~ 244 (1061)
+|||+++++..+++.|+..++..+...+..|+++|..+..++... ++.++|.++..|++|||.+++++++.+..++ .+
T Consensus 161 sEdvf~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~-~~~atl~tl~~fl~wip~~~I~~tn~l~~~l~~~ 239 (1041)
T KOG2020|consen 161 SEEVFDFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSE-LLSATLETLLRFLEWIPLGYIFETNILELLLNKF 239 (1041)
T ss_pred HHHHhcccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhcccHHHHHHhhhHHHHHHhc
Confidence 999999998888988888888888899999999999998887766 9999999999999999999999988888777 67
Q ss_pred CCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchH-HHHHHHHHHHHHHHHH
Q 036770 245 FPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQ-AFIQNLALFFTSFFKF 323 (1061)
Q Consensus 245 L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~-~~~~~l~~l~~~~~~~ 323 (1061)
++.|++|..|++||+++++++.. .|+.+...+|+..+..+. .++...++.++|......|+ .|+++++.+++.|++.
T Consensus 240 ln~~~~r~~al~CL~ei~s~~~~-~~~~~~~~~~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~ 317 (1041)
T KOG2020|consen 240 LNAPELRNNALSCLTELLSRKRS-IYERKTVPMFNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQ 317 (1041)
T ss_pred cchHHHHHHHHHHHHHHHhcccc-chhHHhHHHHHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998654 467777888887777766 66677888888887777788 8999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchh--hhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSV--VDG 401 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--l~~ 401 (1061)
|..++|......+.+..++.+++.++..++.++++.|+++|..++.+++.. + .|......| .|+. ..+
T Consensus 318 ~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~~ld~W~~lv~~l~~~-~-~~ll~~s~~--------~~~~~~~~r 387 (1041)
T KOG2020|consen 318 HIALLESSLSQRPVLLEALLELILISTIEPSEIFKICLDYWNKLVADLYYN-K-PPLLQLSTT--------LPSISDYSR 387 (1041)
T ss_pred HHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhhhcc-c-ccccccccc--------cccccchhc
Confidence 999999854445666788899999999999999999999999999998764 2 121110001 0111 222
Q ss_pred hhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHH
Q 036770 402 IGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML 481 (1061)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~ 481 (1061)
. +.++..|..++++++...+.+|++|+++++++++.|+.+|+.++|.+.+.+|+.+++++.++++++..++..++.
T Consensus 388 i----~~rk~~y~~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~ 463 (1041)
T KOG2020|consen 388 I----DFRKSIYQEFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMT 463 (1041)
T ss_pred c----chHHHHHHHHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhh
Confidence 2 556889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH
Q 036770 482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA 561 (1061)
Q Consensus 482 ~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~ 561 (1061)
.++..++++..|+|+.++..|||+|+++|.+.++.+++|+..++..++++|+.+.|+++++++++++||++|+||+|++.
T Consensus 464 ~kl~~~l~~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~ 543 (1041)
T KOG2020|consen 464 EKLAIQLDGDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKA 543 (1041)
T ss_pred HhHHHHhhHHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHH
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHH
Q 036770 562 HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESV 641 (1061)
Q Consensus 562 ~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eai 641 (1061)
||.+|+++.++|++|||+.|++|++|||++|.+|+.+|+.+|+..++++..||+..++..+..+.+++.+.++..+|+|+
T Consensus 544 h~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~~l~~~q~~~~~~al 623 (1041)
T KOG2020|consen 544 HWKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITEDLQPQQRHTFYEAL 623 (1041)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhcCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHH
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~l 721 (1061)
|.+|++...+..+.++.+.++..++..|..++.++..+...+.+++.++.+.+++.+++++++++|++|.++.+.+++++
T Consensus 624 ~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~~~~~~~~~d~ 703 (1041)
T KOG2020|consen 624 GLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCNDEILKLLETVKSLLNILKTNSRALTSLGSTFVPQLGKIYLDM 703 (1041)
T ss_pred HHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCcccHHhhcchHHHHHHHHHHHhHHHHHHhcCcccccccccccHHH
Confidence 99999988888888999999999999999988887777778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---------------hhcCCCCcch
Q 036770 722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQI---------------GKQNVPDARE 786 (1061)
Q Consensus 722 l~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l---------------~~~~~~~~r~ 786 (1061)
+++|..++..++..+...|..+++.|+++.++.+++++..++.++++...+...+ +..++|+.|.
T Consensus 704 ~~l~~~~s~~v~~~~~~~~~~~t~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~ 783 (1041)
T KOG2020|consen 704 LQLYIKQSELVSINVTAGGSEKTKTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRE 783 (1041)
T ss_pred HHHHHHhcccccHHHhcccccccccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhc
Confidence 9999999999999999999999999999999999999999999999987542211 2248999999
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHH
Q 036770 787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDS 866 (1061)
Q Consensus 787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~ 866 (1061)
+.++++.+.++.++|..+...++.++.++++|++.|+++++.++||+|.+|+.++.++...|+..+..+|+++++.+.++
T Consensus 784 ~~vl~l~~~iv~~Lg~~i~~~~~~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~s 863 (1041)
T KOG2020|consen 784 NEVLSLNATIVPKLGEFIPAELPLINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDS 863 (1041)
T ss_pred chHHHhhhhhhhhhhhHhhhhccHHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCC
Q 036770 867 IIWAFRHTERNIAETGLNLLLEMLKNFQASE-FCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945 (1061)
Q Consensus 867 i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~ 945 (1061)
+.|+++|..|+|+++++..+..++++..... ..++||++||..++..++.+.+|+.|+++|..|+..+..++++.+.+.
T Consensus 864 i~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~L~~~~l~~l~~~~~ 943 (1041)
T KOG2020|consen 864 IVWAFHHTMRNIAENGLNILLELLKNLAEMEKFANAFYQTYFLSLLQKIIAVLTDTDHKAGFTKQVLKLQFLFRLVESAK 943 (1041)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhhcchHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999987644 789999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhcccCCChh
Q 036770 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKD 1025 (1061)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~~~~~~ 1025 (1061)
+..|+++...++ .|..++.+++..++.+.||+++++++..|..+++..++|...|++++|| ++.+|++|.+..+
T Consensus 944 ~~~~l~~~~~v~----~n~~~L~e~i~~~l~~~f~~~~~~~v~~~~~~~~~~~~~~~~~k~~~~d--~~~~e~~~~~~~~ 1017 (1041)
T KOG2020|consen 944 LHTPLLQGNVVH----GNQAFLREYIYGLLRPAFPNLTDEQVRAFDIGLFDECKDVSPFKDHVRD--VQIKEFGGQDTSD 1017 (1041)
T ss_pred HHHhhccccccc----hHHHHHHHHHHHhhhhhchhhchHHHHHHhHHHHHHhcccchhhcchhh--HHHHHhcccchHH
Confidence 999999987655 2778999999999999999999999999999999999999999999999 9999999966669
Q ss_pred hhHHHHHHHHHHHHHhhccCCCcCC
Q 036770 1026 LYAEEAAAQRERERQRMLSIPGLIA 1050 (1061)
Q Consensus 1026 l~~~e~~~~~~~~~~~~~~~~g~~~ 1050 (1061)
+|.+|++.+....++ ...+||+++
T Consensus 1018 l~~~e~~~~~~r~~~-~~~~pgi~~ 1041 (1041)
T KOG2020|consen 1018 LFREEAEIRLLRANQ-MLLIPGILD 1041 (1041)
T ss_pred HHHHHhhHHhhhhhc-ccCCcccCC
Confidence 999999998444444 778898864
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-70 Score=603.39 Aligned_cols=903 Identities=15% Similarity=0.241 Sum_probs=666.0
Q ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 16 ALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 16 ~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
+.++|||.+..+|. |+..|+||-++++++|.||++|++|..++..+ .++.+||||+|||.++++..+++.+..+.+.+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 57899999999985 99999999999999999999999999999765 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhH--HHHHHHHHHHHHHHHhc
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETI--CENCMAILKLLSEEVFD 171 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~--~~~~L~iL~~l~EEv~~ 171 (1061)
|..+++|+.-.+-++.....+.+++||++++++.++..+||..|++|+.|+......++.. .+.++++|..+..|+.|
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s~~~~~dfflkvllaIdsEiad 162 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDSAISGLDFFLKVLLAIDSEIAD 162 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcccchhhHHHHHHHHHHhhhHhhh
Confidence 9999999987654444355679999999999999999999999999999999988876544 88999999999999998
Q ss_pred cC--cccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 172 FS--RGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 172 ~~--~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
.. +..-...|++.+||+|| +++|++.+.|++++... .++.+...+|+|+++|++||+++.+.+..+++++++++
T Consensus 163 ~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl 242 (980)
T KOG2021|consen 163 QDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFL 242 (980)
T ss_pred ccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH
Confidence 32 23334578899999999 78999999999999763 37899999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHhcCcCCcchHH-HHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 036770 246 PMPSYRNLTLQCLTEVGALNFGDFYNV-QYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFH 324 (1061)
Q Consensus 246 ~~~~~~~~a~~cL~ei~~~~~~~~~~~-~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~ 324 (1061)
..+++|.+|++|+.++++++|+| .++ .+......+.+ ++ ........+|.+|.++++++++++|.+.
T Consensus 243 ~ieelR~aac~cilaiVsKkMkP-~dKL~lln~L~q~l~----lf-------g~~s~dq~~d~df~e~vskLitg~gvel 310 (980)
T KOG2021|consen 243 NIEELRIAACNCILAIVSKKMKP-MDKLALLNMLNQTLE----LF-------GYHSADQMDDLDFWESVSKLITGFGVEL 310 (980)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHH----HH-------hhhccccccCchHHHHHHHHHhhcceee
Confidence 99999999999999999999987 333 23333322222 11 0111233478899999999999999986
Q ss_pred HHHhccc-----h----hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCC
Q 036770 325 IRVLEST-----Q----ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLL 395 (1061)
Q Consensus 325 ~~ile~~-----~----~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 395 (1061)
..+.+.. + +....+...+-+|++...++++++.--.++||+.++..+-+ ....+ +
T Consensus 311 ~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKk-l~~ls----------~----- 374 (980)
T KOG2021|consen 311 TIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKK-LKALS----------S----- 374 (980)
T ss_pred ehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhh-ccccc----------c-----
Confidence 4433321 1 12334446677888888888889999999999999877632 21110 0
Q ss_pred chhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccccc----CCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 396 PSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVED----ENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 396 ~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~----d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
+. ...+.++..++++||.|++.....|+ |+.+.|.|+|+ ..+.-+..+..+
T Consensus 375 -----------~q-----k~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rk---------kLk~fqdti~~i 429 (980)
T KOG2021|consen 375 -----------PQ-----KVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRK---------KLKNFQDTIVVI 429 (980)
T ss_pred -----------hh-----hccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHH---------HHHHHHHHHHhc
Confidence 01 23366677788899999886542222 23334444444 334555667888
Q ss_pred CHHhHHHHHHHHHHhhc-cCCccccchhhHHHHHHHhhhCCCChhHH----h-----HHHHHHHHHHHHhhhhhcCCcch
Q 036770 472 DHEDTEKQMLKKLSKQL-SGEDWTWNNLNTLCWAIGSISGSMMEEQE----N-----RFLVMVIRDLLNLCEMTKGKDNK 541 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~-~~~~~~w~~le~~~~algsis~~~~~~~e----~-----~~l~~vi~~Ll~l~~~~~~~~~k 541 (1061)
+|+-+...+.+.+...+ +.++.+|+.+|.++|.+...++++..+.- . ..+..++..++. ....+. +.
T Consensus 430 dpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~t--sqv~~h-~h 506 (980)
T KOG2021|consen 430 DPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMT--SQVLAH-DH 506 (980)
T ss_pred CHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHH--cccccC-Cc
Confidence 99888888888887765 34567999999999999999988765421 1 122222222221 111122 34
Q ss_pred HHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHH--hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHH
Q 036770 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFE--FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELL 619 (1061)
Q Consensus 542 ~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~--~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il 619 (1061)
..|+--.|+++.||..|+...+.+.+.+++++++ ++|+.+..|+.||+|+|.|+++.-++++++ |+++++
T Consensus 507 ~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvp--------fie~il 578 (980)
T KOG2021|consen 507 ELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVP--------FIEEIL 578 (980)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 5567778899999999999999999999999998 999999999999999999999999999985 999999
Q ss_pred HhHHHhhh------------cCCcchHHHHHHHHhhhhccCCC-HHHHHHHHHHHhhchHHHHHHHHHHH--hccccccC
Q 036770 620 SGLATTVA------------DLEPHQIHTFYESVGHMIQAESD-VQKREEYLQRLMLLPNQKWSEIIAQA--RQSVDFLK 684 (1061)
Q Consensus 620 ~~l~~~~~------------~l~~~~~~~l~eaig~li~~~~~-~~~~~~~l~~Ll~~~~~~~~~~~~~~--~~~~~~~~ 684 (1061)
+.+++... ...++++.++||++|.+|+.... ++.+..|.+.++.|+..+..-...++ .++ ..
T Consensus 579 n~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasd---e~ 655 (980)
T KOG2021|consen 579 NKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASD---EA 655 (980)
T ss_pred HHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhcc---cc
Confidence 99997761 23467899999999999987655 45678899999999877654322221 111 13
Q ss_pred CHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-----CccchhhhHHHHHHHHHH
Q 036770 685 DQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGP-----FASKTSYVKLLRSVKRET 759 (1061)
Q Consensus 685 d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~-----~~~~~~~~~~~~~~~~~i 759 (1061)
-+..+..++|++.+.++.++|+...-.+.-. +..+.+|+...+.+..++...|- .+.++.+.|.+.+++..+
T Consensus 656 ~pv~Ia~c~~~lmaig~lakgf~~rlvt~~q---vg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~v 732 (980)
T KOG2021|consen 656 SPVVIAECHHILMAIGTLAKGFHIRLVTENQ---VGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKV 732 (980)
T ss_pred ccHHHHHHHHHHHHHHHHhhcccccCcchhc---ccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhh
Confidence 4566777889999999999987654422211 23455677888888777766553 234455567788888888
Q ss_pred HHHHHHHHhhCCChhhhhhcCCCCcc-hHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhh-ccC-------CC
Q 036770 760 LKLIETFLDKAEDQPQIGKQNVPDAR-ESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITK-NFE-------DY 830 (1061)
Q Consensus 760 l~ll~~~i~~~~~~~~l~~~~~~~~r-~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~-~~~-------~~ 830 (1061)
++.+.+.++.. + +..+.+ ..+||.++++++++|+.++-+.+.+++..+...+++.|.. +.. +-
T Consensus 733 lPfipklie~l-----L---~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek 804 (980)
T KOG2021|consen 733 LPFIPKLIELL-----L---SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEK 804 (980)
T ss_pred hcchHHHHHHH-----H---hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHH
Confidence 88888877654 2 222333 3579999999999999887666666666555555565541 111 23
Q ss_pred hHhHHHHHHHHHHHHhhchhHhhcCC--hHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 036770 831 PEHRLKFFSLLRAIATHCFPALIRLS--SQQLKLVMDSIIWAFRH-TERNIAETGLNLLLEMLKNFQASEFCNQFYRTYF 907 (1061)
Q Consensus 831 Pd~~~~~f~ll~~i~~~~~~~l~~~~--~~~~~~~~~~i~~~~~~-~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~ 907 (1061)
-++|++|+.|+..+..+.+..++-.+ ...++.++..++.+... .+|-..+++...+..+...|+++....+ ++.|.
T Consensus 805 ~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a~~y~dpmmQksln~lcnk~v~lwggkdg~~g-f~dfv 883 (980)
T KOG2021|consen 805 ILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYAPQYIDPMMQKSLNVLCNKIVCLWGGKDGDNG-FKDFV 883 (980)
T ss_pred HHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhccccccCHHHHHHHHHHHHHHHHhcCCcCCccc-cccce
Confidence 34799999999999998776665433 24566677777755555 6666666666666677777876433222 23333
Q ss_pred HHHH--HHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCC--CC
Q 036770 908 VTIE--QEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPN--MT 983 (1061)
Q Consensus 908 ~~~~--~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~--~~ 983 (1061)
..+. +.||..+.+...+-.....-.++++++++++. ++.. .+.+ ++..+.+..||+ ++
T Consensus 884 lk~~~ln~Cf~~pl~~~Fn~~Dgnt~~~lgEla~llK~------i~ek--------~gne----cv~yL~q~ylPs~q~p 945 (980)
T KOG2021|consen 884 LKIDGLNKCFPIPLEIPFNIKDGNTKTMLGELARLLKE------IFEK--------SGNE----CVKYLTQIYLPSIQLP 945 (980)
T ss_pred eecccccceeeecccCCcccccchHHHHHHHHHHHHHH------HHHH--------hchH----HHHHHHHHhcccccCC
Confidence 3222 24676666665555455555778887776543 2221 3343 444444458884 79
Q ss_pred HHHHHHHHHHHhhcCCChHHHHH-HHHHHHhhhhh
Q 036770 984 AAEVTQFVDGLLESRNDLSTFKN-HIRDFLVQSKE 1017 (1061)
Q Consensus 984 ~~q~~~f~~~l~~~~~d~~~f~~-~lrdF~~~~k~ 1017 (1061)
++-+.+|+++|.+. |.+.|++ ++..|+..+|.
T Consensus 946 qela~qycqaLq~~--d~k~Fk~~f~~~fis~lkp 978 (980)
T KOG2021|consen 946 QELAIQYCQALQTM--DQKQFKKWFVDNFISVLKP 978 (980)
T ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcCC
Confidence 99999999999886 8999999 99999988773
No 4
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-59 Score=530.09 Aligned_cols=894 Identities=15% Similarity=0.197 Sum_probs=658.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDG 92 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~ 92 (1061)
-+|+.+++++..+|++++++....+++||++.|.+|.+|...+++|+..+..++|||||.+|+.||+++|+..|++++..
T Consensus 4 ~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~q 83 (982)
T KOG2022|consen 4 DLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQ 83 (982)
T ss_pred hHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHH
Confidence 37999999999999998888999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC--C-----hhHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT--S-----ETICENCMAILKLL 165 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~--~-----~~~~~~~L~iL~~l 165 (1061)
|+..++..+....++ ++.|.||++.+++.+..+.-|+.||+.+.+++..+.. + ...|...|+.|+.+
T Consensus 84 L~~klf~~l~~~~g~------~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 84 LKLKLFLILSRFAGG------PKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred HHHHHHHHHHHhcCC------chhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 999999999886544 4679999999999999999999999999999998875 2 23588999999999
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHH-----HHHHHHHHHHhcccccCcchhcchhhH
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ--RTD-----LIRATLSTLHAFLSWIPLGYIFESPLL 238 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~--~~~-----l~~~~L~~l~~~l~wi~~~~i~~~~ll 238 (1061)
|+|- +..+++..|+..++..+......++.++..+++... ..+ ....+++|++.|+.++.....-=..++
T Consensus 158 p~e~---q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~~~c~~i~ 234 (982)
T KOG2022|consen 158 PAEF---QHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTGMDCDQIT 234 (982)
T ss_pred cHhh---hhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhccccccHHHHH
Confidence 9983 446788899999999999988999998888888754 333 457999999999997765532223555
Q ss_pred HHHHhhCCC--ccchHHHHHHH------------HHHhcCcCCc---chHHHHHHHHHHHHHHHHhhCCCCCChhhhhcC
Q 036770 239 ETLLKFFPM--PSYRNLTLQCL------------TEVGALNFGD---FYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAH 301 (1061)
Q Consensus 239 ~~l~~~L~~--~~~~~~a~~cL------------~ei~~~~~~~---~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~ 301 (1061)
+.++..++. ....+++-+|+ .+.+.....+ .|...+..+.......++.+.. ..+...+
T Consensus 235 ~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~----~~~~~e~ 310 (982)
T KOG2022|consen 235 QVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSG----KIQEEEN 310 (982)
T ss_pred HHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHH----HHHHHhC
Confidence 555554441 11123333333 2222211111 1222222222211111111110 0012212
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH-Hhccc--hhhHHHHHHHHHHHHHhhccC-----hhhHHHHHHHHHHHHHHHHHH
Q 036770 302 GNSEEQAFIQNLALFFTSFFKFHIR-VLEST--QENISALLMGLEYLINISYVD-----ETEVFKVCLDYWNSFVLELFD 373 (1061)
Q Consensus 302 ~~~~d~~~~~~l~~l~~~~~~~~~~-ile~~--~~~~~~~~~~l~~ll~~~~~~-----d~ei~~~~l~fW~~l~~~l~~ 373 (1061)
.+ .-.+-+..+..+.++++++|.. +++.. ++..+.+.+.++.|+.|++.| ++-++..+++||+++.+++..
T Consensus 311 ~d-~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~ 389 (982)
T KOG2022|consen 311 AD-ASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQ 389 (982)
T ss_pred CC-chhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHH
Confidence 21 1245667789999999999854 44432 233456678889999999887 556788999999999988753
Q ss_pred HhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhH-HhhHHHHHHHHHhhCCCccccc--cccCCchhHHhhhc
Q 036770 374 AHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYA-VPLSKLRMLMICRMAKPEEVLI--VEDENGNIVRETMK 450 (1061)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~-~~l~~L~~~li~km~~p~e~~~--~~~d~~e~~~e~~~ 450 (1061)
...+ . . +.....|. +++.+|++++++||..|.+..+ |..|+.|.|+.||+
T Consensus 390 ~~~e-----~-~---------------------~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~ 442 (982)
T KOG2022|consen 390 TINE-----T-Q---------------------QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRK 442 (982)
T ss_pred hhhc-----c-C---------------------CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHH
Confidence 2110 0 0 12334555 9999999999999999976544 88999999999998
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc---CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHH
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS---GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRD 527 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~---~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~ 527 (1061)
|..+ ++.+..++..+.+..++.+++.+.+. +...+|...|++||++.+|++.+.+. +++.+++.+..
T Consensus 443 diSD---------~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t-~~~~i~rl~~~ 512 (982)
T KOG2022|consen 443 DISD---------LLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET-ESTWIPRLFET 512 (982)
T ss_pred HHHH---------HHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc-hhHHHHHHHHh
Confidence 8754 44555555567777788888887762 24567999999999999999998754 67777777775
Q ss_pred HHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccc
Q 036770 528 LLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQ 607 (1061)
Q Consensus 528 Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~ 607 (1061)
..+..-. +.+ +-..++.+.++|.|+.|+..||.+|.+.++.||.++|+ ++....|..++.++|+.|+.++.+
T Consensus 513 ~asik~S---~~n-~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~--sk~s~q~i~tl~tlC~~C~~~L~p-- 584 (982)
T KOG2022|consen 513 SASIKLS---APN-PQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHN--SKESEQAISTLKTLCETCPESLDP-- 584 (982)
T ss_pred ccccccc---cCC-hhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcC--chHHHHHHHHHHHHHHhhhhhCch--
Confidence 4443332 222 33334467799999999999999999999999999986 456778888899999999999975
Q ss_pred cCCCchHHHHHHHhHHHhhh--cCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCC
Q 036770 608 VGENEPFVSELLSGLATTVA--DLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKD 685 (1061)
Q Consensus 608 ~~e~~p~l~~il~~l~~~~~--~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d 685 (1061)
|.+.++..+..... ...+.++.++|.+||+++++.. ++.+.+|+.+|+.|+.+.++.++.. + ..+
T Consensus 585 ------y~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~il~qle~~l~~---~---i~~ 651 (982)
T KOG2022|consen 585 ------YADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPILSQLEINLAP---G---IDD 651 (982)
T ss_pred ------HHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHHHHHHHHhhcC---C---CCC
Confidence 99999988887643 5567889999999999999998 6677899999999999988765432 2 257
Q ss_pred HHHHHHHHHHHhHHHHHHhhhChh--------------h------HHHHHHH---HHHHHHHHHHHHHHHHHhHhcCCC-
Q 036770 686 QDVIRTVLNILQTNTSVASALGTF--------------F------LSQISVI---FLDMLNVYKMYSELISSSISSGGP- 741 (1061)
Q Consensus 686 ~~~~~~i~~il~~~~~i~~~~~~~--------------f------~~~~~~i---~~~ll~~y~~~~~~i~~~~~~~g~- 741 (1061)
++...++++.+.+.+.++.++-.+ + ...+.++ +..+++.|-..+++++..+..++.
T Consensus 652 ~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~ 731 (982)
T KOG2022|consen 652 QENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKG 731 (982)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhc
Confidence 888888999999998887754311 0 0111222 223334444444444433322111
Q ss_pred -Cccchhh-hHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhh-hc-cCCCChHHHHHHHHH
Q 036770 742 -FASKTSY-VKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKY-KG-AMIDDVPRIFEAIFQ 817 (1061)
Q Consensus 742 -~~~~~~~-~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~-~~-~~~~~l~~i~~~l~~ 817 (1061)
.....++ ...+..+. .++-+|. +.|. ...+.+..+++..+ +. .+.+.++..+...|+
T Consensus 732 v~~~~~sF~~p~l~~l~----~Fi~r~~------------~~~~---a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q 792 (982)
T KOG2022|consen 732 VRSLLTSFPEPMLPSLC----PFIVRFL------------TSCL---AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQ 792 (982)
T ss_pred cccccccchhhhHHHHH----HHHHHhc------------cchH---HHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 1111111 11111111 1111111 1111 23466666665443 33 467888999999999
Q ss_pred HhHHhhhhcc-CCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHH-HHHHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 818 CTLEMITKNF-EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMD-SIIWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 818 ~tl~~i~~~~-~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~-~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
.++-++.+.. .++||+...||.+++.++++.|..+... ..++..++. ++..+++.+++-..+.+.+|+..++...++
T Consensus 793 ~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~-~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 793 QSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPS-MLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccc-hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 9998888654 9999999999999999999998866442 236666666 999999999999999999999999887766
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHH
Q 036770 896 --SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIK 973 (1061)
Q Consensus 896 --~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 973 (1061)
.+...++....+..++-.++..+.....++..+.-+++|..+.+ .+..-.+.|+.+
T Consensus 872 ~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al~~----------------------k~~se~r~wl~~ 929 (982)
T KOG2022|consen 872 HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLALNA----------------------KFFSETRTWLKA 929 (982)
T ss_pred chhHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHHHH----------------------hhhHHHHHHHHH
Confidence 35567888888999999999999998889988888888864333 234456899999
Q ss_pred Hhh-ccCC--CCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhccc
Q 036770 974 LLG-TSFP--NMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSA 1020 (1061)
Q Consensus 974 ~l~-~~fp--~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~ 1020 (1061)
.|. ..|| +++++++..|+..+++.+++++.|++++..|...+|...|
T Consensus 930 ~lq~~gfPs~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~~l~~ 979 (982)
T KOG2022|consen 930 VLQIPGFPSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACTGLPN 979 (982)
T ss_pred HhcCCCCCcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCC
Confidence 996 7899 5899999999999999999999999999999999999866
No 5
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=100.00 E-value=5.9e-51 Score=447.68 Aligned_cols=302 Identities=55% Similarity=0.954 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------
Q 036770 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG--------------- 777 (1061)
Q Consensus 713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~--------------- 777 (1061)
|++.||++++++|+.+|+.|...++..|..++++|.+|.||.+||+|++++++|+++.++++.+.
T Consensus 1 Q~~~i~~d~l~lY~~~s~~i~~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY 80 (319)
T PF08767_consen 1 QLGRIYLDMLNLYRAYSQIISQAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDY 80 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999998755442
Q ss_pred hcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCCh
Q 036770 778 KQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSS 857 (1061)
Q Consensus 778 ~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~ 857 (1061)
+.+.|++|+|++|++++++|.++++.+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..++.+|+
T Consensus 81 ~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~ 160 (319)
T PF08767_consen 81 QNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPP 160 (319)
T ss_dssp HHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H
T ss_pred hcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCH
Confidence 23899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHH
Q 036770 858 QQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA--SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQ 935 (1061)
Q Consensus 858 ~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~ 935 (1061)
++|+.++++++||++|++|+|++.||+++.++++++.. ++.+++||++||..++.++|.++||+.|++||+.|+.+|.
T Consensus 161 ~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~ 240 (319)
T PF08767_consen 161 EQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILS 240 (319)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhh
Q 036770 936 HLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQS 1015 (1061)
Q Consensus 936 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~ 1015 (1061)
.++.+++.|.+..|++++ +..|.+++.+|+.++|.+.||+++++|+..|+.+|++.++|..+||+++|||++++
T Consensus 241 ~Lf~~ve~~~i~~~l~~~------~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~ 314 (319)
T PF08767_consen 241 NLFRLVESGSIQVPLFDP------GMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQL 314 (319)
T ss_dssp HHHHHHHTT-SSSSSSST------TT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccccccCC------CCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 999999999999999982 35899999999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 036770 1016 KEFSA 1020 (1061)
Q Consensus 1016 k~~~~ 1020 (1061)
|||+|
T Consensus 315 kef~g 319 (319)
T PF08767_consen 315 KEFSG 319 (319)
T ss_dssp TSTTT
T ss_pred hhccC
Confidence 99987
No 6
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-47 Score=414.74 Aligned_cols=546 Identities=18% Similarity=0.279 Sum_probs=434.3
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhh
Q 036770 35 TAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREE 114 (1061)
Q Consensus 35 ~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~ 114 (1061)
.+|..||++||+|+++|.+|..+|+...+.++.+||+|++++||++.++.+|+.+..++|+++++++......+
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~------ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHP------ 75 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCC------
Confidence 47999999999999999999999988788899999999999999999999999999999999999999875433
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHH
Q 036770 115 RLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQ 194 (1061)
Q Consensus 115 ~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~ 194 (1061)
..++++++.++|.++.+. ..|.+.+.++++..++.+......|++|+++|||+.+.. ......||.++.+.+....+
T Consensus 76 ~~i~tQL~vavA~Lal~~--~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~-~~~~a~Rr~e~~~~l~~~~~ 152 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM--PEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIR-LTVGANRRHEFIDELAAQVS 152 (559)
T ss_pred chHHHHHHHHHHHHHHHh--HhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchh-hhhhhhhHHHHHHHHHHhHH
Confidence 268999999999999999 589999999999998876667789999999999997753 34667899999999999999
Q ss_pred HHHHHHHHHHhhcCc--HHHHHHHHHHHHhccc--ccCcchhcch-hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcc
Q 036770 195 LIHELCLYVLSASQR--TDLIRATLSTLHAFLS--WIPLGYIFES-PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDF 269 (1061)
Q Consensus 195 ~I~~~~~~~L~~~~~--~~l~~~~L~~l~~~l~--wi~~~~i~~~-~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~ 269 (1061)
.++..+..+++++.. ......+|+|++||.. -.|.+.+.+. +++..+|..+++..+.+.|.+|++.++...-...
T Consensus 153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~ 232 (559)
T KOG2081|consen 153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRS 232 (559)
T ss_pred HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhh
Confidence 999999999998643 5678999999999999 6888988887 9999999999999999999999999987421100
Q ss_pred hHHHHHH-HHHHHHHHHHhhCCCCCChhhhhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 036770 270 YNVQYVN-MYNVFMVQLQTILPPTTNIPEAYA-HGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLIN 347 (1061)
Q Consensus 270 ~~~~~~~-~f~~~l~~l~~~l~~~~~l~~~~~-~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~ 347 (1061)
-...+.. +|.. ..+ +...|+ ....+|.+-..++|++|+.+|+.+...+-..|+ ....+++.++.
T Consensus 233 ~~~~~~~~l~~~-----v~~------L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~---~~l~~vellLl 298 (559)
T KOG2081|consen 233 EGLPLAAILFIG-----VII------LETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE---EFLRIVELLLL 298 (559)
T ss_pred ccCchhHHHhcc-----ccc------cchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC---cchhHHHHHHH
Confidence 0000111 1100 012 233444 345577788899999999999997554443332 12355688999
Q ss_pred hhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHh
Q 036770 348 ISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICR 427 (1061)
Q Consensus 348 ~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~k 427 (1061)
++.++|.|+.+.+|.||+.+.+.++..+. ...+.+|+|++.+++..+.+|
T Consensus 299 ~~~h~~~evie~SF~fW~~lse~l~~~~~------------------------------~~~~~~frpy~~rLvs~l~~h 348 (559)
T KOG2081|consen 299 VAGHNDTEVIEASFNFWYSLSEELTLTDD------------------------------DEALGIFRPYFLRLVSLLKRH 348 (559)
T ss_pred hccCCchhhhhhhHHhhhhhHHHHhcccc------------------------------HHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999998874321 345668999999999999999
Q ss_pred hCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHh-cCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHH
Q 036770 428 MAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLS-HLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIG 506 (1061)
Q Consensus 428 m~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~-~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~alg 506 (1061)
.++|++....- |+...|.+|+- .+.+.+...+ -++.+.+.+.+..++.+ +..+|+..||++|.+.
T Consensus 349 ~qlp~~~~~l~-Ee~~~f~~fR~---------~v~dvl~Dv~~iigs~e~lk~~~~~l~e----~~~~We~~EAaLF~l~ 414 (559)
T KOG2081|consen 349 VQLPPDQFDLP-EEESEFFEFRL---------KVGDVLKDVAFIIGSDECLKQMYIRLKE----NNASWEEVEAALFILR 414 (559)
T ss_pred ccCCCccccCc-cchhHHHHHHH---------HHHHHHHHHHHHhCcHHHHHHHHHHHcc----CCCchHHHHHHHHHHH
Confidence 99998544322 23344555542 2223333222 23456777888888765 3568999999999999
Q ss_pred hhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHH
Q 036770 507 SISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQD 586 (1061)
Q Consensus 507 sis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~ 586 (1061)
.+++.+.++ +++.+|+|++.+.++|++ .+.++++ ++ ++|+|++|+..||+++.+++++++.++... +++.
T Consensus 415 ~~~~~~~~~-e~~i~pevl~~i~nlp~Q-----~~~~~ts-~l-l~g~~~ew~~~~p~~le~v~~~~~~~~~~~--~~as 484 (559)
T KOG2081|consen 415 AVAKNVSPE-ENTIMPEVLKLICNLPEQ-----APLRYTS-IL-LLGEYSEWVEQHPELLEPVLRYIRQGLQLK--RLAS 484 (559)
T ss_pred HHhccCCcc-ccchHHHHHHHHhCCccc-----hhHHHHH-HH-HHHHHHHHHHhCcHHHHHHHHHHHHHhhhc--chhH
Confidence 999999866 789999999999999997 3445444 66 999999999999999999999999988764 3999
Q ss_pred HHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchH
Q 036770 587 MACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPN 666 (1061)
Q Consensus 587 ~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~ 666 (1061)
.|+.+|.++|..|+.++..+- |++.+++..+..... +.+... +.+|++.+++.+|..+.+ ..++.+.++..
T Consensus 485 ~~a~~~~~i~~~c~~~~~~l~-----~~~~~l~~~l~~~~~--~~e~a~-l~~~~s~i~~~lp~~k~~-~~~~el~~~~l 555 (559)
T KOG2081|consen 485 AAALAFHRICSACRVQMTCLI-----PSLLELIRSLDSTQI--NEEAAC-LLQGISLIISNLPAHKAK-IALEELCEPQL 555 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhc--cHHHHH-HHHHHHHHHhcCCHhhhh-HHHHHHhhHHH
Confidence 999999999999999988643 466777777765533 355555 999999999999987654 47777776643
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-46 Score=407.01 Aligned_cols=698 Identities=18% Similarity=0.312 Sum_probs=510.6
Q ss_pred CHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc--CCChHHHHHHHHHHHHHHhcccCCCCHH
Q 036770 14 DVALLDATVAAFY---GTGSKEERTAADQILRDLQNNPDMWLQVVHILQN--SKNLNTKFFALQVLEGVIKYRWNALPVE 88 (1061)
Q Consensus 14 di~~l~~av~~ly---~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~--s~~~~~rffaa~~L~~~I~~~w~~l~~e 88 (1061)
+=+.+.|+++.+- +| |++.|+.++.-|++|+..|+.-.+...+|.+ +.+..+|-.|..+|+|.++-.|+.++++
T Consensus 8 ~e~~l~ql~~lLk~s~Sp-n~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 8 DEQGLQQLAQLLKNSQSP-NSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred cHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH
Confidence 4344555554444 44 6778999999999999999999999999964 4467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHHHHHH
Q 036770 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILKLLSE 167 (1061)
Q Consensus 89 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~E 167 (1061)
....+|..++.-+.. . ++.||+..+.++..|+...+-+.||+.++.+++.+.+.. +.|+..+..|..++|
T Consensus 87 ~~~yiKs~~l~~lgd----~-----~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGD----A-----SPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHHhhccC----c-----hHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHh
Confidence 999999999887643 1 357899999999999999999999999999999998754 778889999999999
Q ss_pred HHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC-
Q 036770 168 EVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP- 246 (1061)
Q Consensus 168 Ev~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~- 246 (1061)
+...+ ++. .|. --|++ .+++.++++..
T Consensus 158 Dsa~~-------------------------------lds---------------~~~-~rpl~-----~mipkfl~f~~h 185 (885)
T KOG2023|consen 158 DSAQF-------------------------------LDS---------------DVL-TRPLN-----IMIPKFLQFFKH 185 (885)
T ss_pred hhHHH-------------------------------Hhh---------------hcc-cCchH-----HhHHHHHHHHhC
Confidence 74331 000 000 00222 23444454433
Q ss_pred -CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 036770 247 -MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHI 325 (1061)
Q Consensus 247 -~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~ 325 (1061)
+|.+|..|+.|++.++-....+ +...+-+ .++ ..|.-++++|++..+++|+-++-+.+-+.
T Consensus 186 ~spkiRs~A~~cvNq~i~~~~qa-l~~~iD~----Fle-------------~lFalanD~~~eVRk~vC~alv~Llevr~ 247 (885)
T KOG2023|consen 186 PSPKIRSHAVGCVNQFIIIQTQA-LYVHIDK----FLE-------------ILFALANDEDPEVRKNVCRALVFLLEVRP 247 (885)
T ss_pred CChhHHHHHHhhhhheeecCcHH-HHHHHHH----HHH-------------HHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence 5678888888888877654322 1111111 111 12222456788999999999999888876
Q ss_pred HHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhh
Q 036770 326 RVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQ 405 (1061)
Q Consensus 326 ~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 405 (1061)
..+. |+..+++ +||+..+.-.|++|+..+.|||..+++. |
T Consensus 248 dkl~--phl~~Iv----eyML~~tqd~dE~VALEACEFwla~aeq--------p-------------------------- 287 (885)
T KOG2023|consen 248 DKLV--PHLDNIV----EYMLQRTQDVDENVALEACEFWLALAEQ--------P-------------------------- 287 (885)
T ss_pred Hhcc--cchHHHH----HHHHHHccCcchhHHHHHHHHHHHHhcC--------c--------------------------
Confidence 6554 3444444 9999998888889999999999999853 1
Q ss_pred hhhhhhhhHHhhHHHHHHHHHhhCCCccccc-cc-cCCchhH--Hh------h---------------------hcch--
Q 036770 406 LLQRRQLYAVPLSKLRMLMICRMAKPEEVLI-VE-DENGNIV--RE------T---------------------MKDN-- 452 (1061)
Q Consensus 406 ~~~~~~~~~~~l~~L~~~li~km~~p~e~~~-~~-~d~~e~~--~e------~---------------------~~d~-- 452 (1061)
..+.+..|++.+++++++.+|+|.++..+ .. +||++.+ || + ..|.
T Consensus 288 --i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 288 --ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred --CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 12335688999999999999999875433 21 1111100 00 0 0111
Q ss_pred -hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhC-CCChhHHhHHHHHHHHHHHH
Q 036770 453 -DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISG-SMMEEQENRFLVMVIRDLLN 530 (1061)
Q Consensus 453 -~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~-~~~~~~e~~~l~~vi~~Ll~ 530 (1061)
.+|+++++...+|..++++.++++..++++.|+..+.. ..|...|+...|+|+||+ ||..- ..+++.+++.|++
T Consensus 366 ~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~--~p~LpeLip~l~~ 441 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGF--VPHLPELIPFLLS 441 (885)
T ss_pred cccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhc--ccchHHHHHHHHH
Confidence 13899999999999999999999999999999887643 589999999999999995 56433 5789999999999
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccccccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQV 608 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~ 608 (1061)
+... .++.|++-.+|+++||+.|+.. +.+|+.+++.-|+..+-+++.+||++||.+|..+-+.....+++
T Consensus 442 ~L~D-----KkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp--- 513 (885)
T KOG2023|consen 442 LLDD-----KKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP--- 513 (885)
T ss_pred Hhcc-----CccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH---
Confidence 8875 6788899899999999999865 34799999999999777888999999999999999998888885
Q ss_pred CCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHH
Q 036770 609 GENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDV 688 (1061)
Q Consensus 609 ~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~ 688 (1061)
|++.|+.++....+....++...+|+|||.+...++..-.+..|++.||.|+.++|+.+- | .|+
T Consensus 514 -----~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls-----d----~DK-- 577 (885)
T KOG2023|consen 514 -----YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS-----D----SDK-- 577 (885)
T ss_pred -----HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC-----c----ccc--
Confidence 999999999888888888888999999999999887655557899999999999998642 1 233
Q ss_pred HHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHh
Q 036770 689 IRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLD 768 (1061)
Q Consensus 689 ~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~ 768 (1061)
.+..+|+|++++++++|.+|.|+..++|...+.+.+... . ....
T Consensus 578 --dLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~-------------------------------q---~~~~ 621 (885)
T KOG2023|consen 578 --DLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTL-------------------------------Q---LLAK 621 (885)
T ss_pred --hHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHH-------------------------------H---HHHh
Confidence 489999999999999999999998877654433322111 1 1111
Q ss_pred hCCChhhhhhcCCCC-cchHHHHHHHHHHHHhhhccCCCChH--HHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHH
Q 036770 769 KAEDQPQIGKQNVPD-ARESEVLSLFATIINKYKGAMIDDVP--RIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIA 845 (1061)
Q Consensus 769 ~~~~~~~l~~~~~~~-~r~~~~L~l~~~li~~~~~~~~~~l~--~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~ 845 (1061)
...+.. + ..|+ ...-..|.+++.++..+|+.+.+.+. .+.+.+++|.. +.-||+|++.|.|+..++
T Consensus 622 ~~~~~~-~---~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~-------D~~peVRQS~FALLGDlt 690 (885)
T KOG2023|consen 622 VQQDPT-V---EAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQ-------DEVPEVRQSAFALLGDLT 690 (885)
T ss_pred ccCCcc-c---cCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhc-------cCChHHHHHHHHHHHHHH
Confidence 111110 1 1121 11234699999999999998877664 57777777754 578999999999999999
Q ss_pred hhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh
Q 036770 846 THCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVL 918 (1061)
Q Consensus 846 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 918 (1061)
+.||+.+.. .+..++--+..-+...+..++..|+-.+.++-...+.+. . .|...++...+.++
T Consensus 691 k~c~~~v~p----~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~----~~v~~vl~~L~~ii 753 (885)
T KOG2023|consen 691 KACFEHVIP----NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--K----QYVSPVLEDLITII 753 (885)
T ss_pred HHHHHhccc----hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--h----hHHHHHHHHHHHHh
Confidence 999887642 233333333344444555566666666666654444221 1 44455555555544
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-32 Score=302.03 Aligned_cols=646 Identities=17% Similarity=0.259 Sum_probs=443.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHccC-CChHHHHHHHHHHHHHHh-----------cccCCCC
Q 036770 21 TVAAFYGTGSKEERTAADQILRDLQNNPD--MWLQVVHILQNS-KNLNTKFFALQVLEGVIK-----------YRWNALP 86 (1061)
Q Consensus 21 av~~ly~~~~~~~r~~A~~~L~~fq~s~~--aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~-----------~~w~~l~ 86 (1061)
++....+| |+..|++|+++|.+++...- ......++|.+. +++.+|..|..+|||.+. .||..++
T Consensus 6 ~le~tlSp-D~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 6 LLEKTLSP-DQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLP 84 (859)
T ss_pred HHHHHcCC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCC
Confidence 33334455 66689999999999999763 444556777654 467899999999999885 5899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCCh--hHHHHHHHHHH
Q 036770 87 VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTSE--TICENCMAILK 163 (1061)
Q Consensus 87 ~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~ 163 (1061)
.|.|+.+|+.++..+.... +...+-.++++|.|+..+-|+ .||++|..+++.....+ ...+..|+.++
T Consensus 85 ~e~reqVK~~il~tL~~~e---------p~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPE---------PRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHHHHHHHHHHHHcCCCC---------CCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 9999999999999886421 123356889999999999997 79999999999987653 35788999999
Q ss_pred HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHhcccccCcchhcc---hhhHH
Q 036770 164 LLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS-QRTDLIRATLSTLHAFLSWIPLGYIFE---SPLLE 239 (1061)
Q Consensus 164 ~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~-~~~~l~~~~L~~l~~~l~wi~~~~i~~---~~ll~ 239 (1061)
.+||++.- + .+.+....|+.-+.+.+.+. ++..++-++++||-.-+.+...++-.+ +-+++
T Consensus 156 yice~i~p---e------------vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq 220 (859)
T KOG1241|consen 156 YICEDIDP---E------------VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ 220 (859)
T ss_pred HHHccCCH---H------------HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee
Confidence 99998621 1 23346677777777777664 456788899999998887765432211 46777
Q ss_pred HHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHH
Q 036770 240 TLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFF 317 (1061)
Q Consensus 240 ~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~ 317 (1061)
.++...+ +.+++.+|+.||+.|+++ |++.+. . |+.. +.|
T Consensus 221 vvcEatq~~d~~i~~aa~~ClvkIm~L-----yY~~m~----------------------~----------yM~~-alf- 261 (859)
T KOG1241|consen 221 VVCEATQSPDEEIQVAAFQCLVKIMSL-----YYEFME----------------------P----------YMEQ-ALF- 261 (859)
T ss_pred eeeecccCCcHHHHHHHHHHHHHHHHH-----HHHHHH----------------------H----------HHHH-HHH-
Confidence 7886654 456889999999999997 444211 0 1110 000
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHH---HhccCCCcccccccCCCCCCC
Q 036770 318 TSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFD---AHNNLENPAVTANMMGLPMPL 394 (1061)
Q Consensus 318 ~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~---~~~~~~~~~~~~~~~g~~~~~ 394 (1061)
..-+.-...++++|...++|||++++++-.+ ++...... |.+
T Consensus 262 -------------------------aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~-------~~~--- 306 (859)
T KOG1241|consen 262 -------------------------AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ-------GLP--- 306 (859)
T ss_pred -------------------------HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC---
Confidence 1111112346778999999999999887544 22111100 111
Q ss_pred CchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHH
Q 036770 395 LPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHE 474 (1061)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~ 474 (1061)
| ....+-+..+..+++++++.+.+.+| ++|+ |+|+..+....||..+++...+
T Consensus 307 -p-----------~~~~fa~~a~~~v~P~Ll~~L~kqde-----~~d~----------DdWnp~kAAg~CL~l~A~~~~D 359 (859)
T KOG1241|consen 307 -P-----------SSKYFARQALQDVVPVLLELLTKQDE-----DDDD----------DDWNPAKAAGVCLMLFAQCVGD 359 (859)
T ss_pred -c-----------hhhHHHHHHHhHhhHHHHHHHHhCCC-----Cccc----------ccCcHHHHHHHHHHHHHHHhcc
Confidence 1 12334466788899999999988664 2221 2367778889999999999899
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
++...+++.+.+.+. +.+|++.|++..++|||.+...++.-+..+++.++.++++..+ +...+..+..|++||
T Consensus 360 ~Iv~~Vl~Fiee~i~--~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D-----~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQ--NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD-----PSLWVKDTAAWTLGR 432 (859)
T ss_pred cchhhhHHHHHHhcC--CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC-----chhhhcchHHHHHHH
Confidence 999999999987764 4689999999999999999877776678888888888876653 455666778899999
Q ss_pred chHHHHH---hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccccc-ccCCCchHHHHHHHhHHHhhhcCC
Q 036770 555 YPRFLRA---HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIV-QVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 555 y~~~l~~---~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~-~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
.++++.. |..++.+++.-+..++++ +|.|...+|++|..+++.|....+.. +.....||++.|+..+-..+.+.+
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d 511 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD 511 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc
Confidence 9998853 677999999999999986 69999999999999999999877654 333455899999999987776544
Q ss_pred ---cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHH-HHHHhHHHHHHhhh
Q 036770 631 ---PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTV-LNILQTNTSVASAL 706 (1061)
Q Consensus 631 ---~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i-~~il~~~~~i~~~~ 706 (1061)
...|...|||++-+|...|.+- ...+..+......++++.++.... ...|.+....+ ..++.++.++-+.+
T Consensus 512 gnqsNLR~AAYeALmElIk~st~~v--y~~v~~~~l~il~kl~q~i~~~~l---~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 512 GNQSNLRSAAYEALMELIKNSTDDV--YPMVQKLTLVILEKLDQTISSQIL---SLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred cchhhHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHHHHHHHHHHHHHHhc---cHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 4458889999999999988753 234555555556666666652111 11344433344 34456777777778
Q ss_pred ChhhHHHHHHHHHHHHHHHHH-HHHHHHHh-HhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCc
Q 036770 707 GTFFLSQISVIFLDMLNVYKM-YSELISSS-ISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDA 784 (1061)
Q Consensus 707 ~~~f~~~~~~i~~~ll~~y~~-~~~~i~~~-~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~ 784 (1061)
++.+.+....++.-++.++.. -+..+... +-+. .-.+..+++...+..++|..-. ...+- +..+.
T Consensus 587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV---------~tl~~~Lg~~F~kym~~f~pyL--~~gL~--n~~e~ 653 (859)
T KOG1241|consen 587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV---------STLAESLGKGFAKYMPAFKPYL--LMGLS--NFQEY 653 (859)
T ss_pred cccchhHHHHHHHHHHHHHcCCccccchHHHHHHH---------HHHHHHHhHhHHHHHHHHHHHH--HHHhh--cchHH
Confidence 877766667777766666654 11111110 0000 0111223333222222221100 00000 11111
Q ss_pred ch-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHH
Q 036770 785 RE-SEVLSLFATIINKYKGAMIDDVPRIFEAIFQC 818 (1061)
Q Consensus 785 r~-~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~ 818 (1061)
.. .....+.+.+...++.++.|+.+.++..+.++
T Consensus 654 qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 11 24688889999999999999888888887766
No 9
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-29 Score=272.51 Aligned_cols=805 Identities=16% Similarity=0.280 Sum_probs=504.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
++++++..+..+|.+.|+.+|.+|++-|.+|..+|++.+.|.-+|.++..++....|+..|-..+... ..||.++|..|
T Consensus 3 sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~-t~lpl~qrldi 81 (1082)
T KOG1410|consen 3 SLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-TPLPLEQRLDI 81 (1082)
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999888765 37999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC------ccchhHHHHHHHccCC-hhHHHHHHHHHHHHH
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA------RWRSFIPDLVAAAKTS-ETICENCMAILKLLS 166 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~------~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~ 166 (1061)
|+++++++.. ..|+. +++++..+++.+|.+-|..|-+ .+.+.+.++...++.+ ..+|..++.||..|.
T Consensus 82 r~Yilnylat--~~Pk~---~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 82 RNYILNYLAT--GAPKL---APFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHhc--CCCCc---ccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999986 33432 5799999999999999999975 3567888888888765 678999999999999
Q ss_pred HHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcC-----c-------HHHHHHHHHHHH-hcccc------
Q 036770 167 EEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSASQ-----R-------TDLIRATLSTLH-AFLSW------ 226 (1061)
Q Consensus 167 EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~~-----~-------~~l~~~~L~~l~-~~l~w------ 226 (1061)
.|+...+ ...+..+.+++-..+| +..-+||.+-.+.|.... + ..+.+.+|+|+. .|+.-
T Consensus 157 qemN~~~-~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEss 235 (1082)
T KOG1410|consen 157 QEMNQAD-GMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDESS 235 (1082)
T ss_pred HHhhCCC-CCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccccccc
Confidence 9986532 2334566667777788 567789988888887642 1 235667888876 45441
Q ss_pred -------cCcc---hhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCC
Q 036770 227 -------IPLG---YIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTN 294 (1061)
Q Consensus 227 -------i~~~---~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~ 294 (1061)
||.+ .+.++..++++|++.+ .|++.+.|++||+.+++.+.+-..+..-.....+.++-+..++.....
T Consensus 236 ed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~ 315 (1082)
T KOG1410|consen 236 EDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQG 315 (1082)
T ss_pred ccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcC
Confidence 2221 2445789999998876 467899999999999997532111112223333344444454433222
Q ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhcc-C-hhhHHHHHHHHHHHHHHHHH
Q 036770 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYV-D-ETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 295 l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~-~-d~ei~~~~l~fW~~l~~~l~ 372 (1061)
+.+ ...--+|++-+|++-+.+--.-+..++..|+...++- ++.+.-..+ + ........+.+|.+++...
T Consensus 316 LsD-----~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiA---eFTv~SLq~wefa~nSvyyLlt~WqRmvaSV- 386 (1082)
T KOG1410|consen 316 LSD-----PANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIA---EFTVTSLQHWEFAPNSVYYLLTLWQRMVASV- 386 (1082)
T ss_pred CCC-----cchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHH---HHHHHHHHhhhcccchhHHHHHHHHHHHhcC-
Confidence 221 0111234444444444433322345566665544331 333322111 1 1234567889999998653
Q ss_pred HHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcch
Q 036770 373 DAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDN 452 (1061)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~ 452 (1061)
|+..... |..++.|. +....-| +.+++-.+ .+.-|++. |+ =+.|+
T Consensus 387 ------Pyvk~~~----------phlLd~y~---PeIt~af--i~SRl~sV---~~ivrd~~---d~--------PLdd~ 431 (1082)
T KOG1410|consen 387 ------PYVKNTE----------PHLLDTYC---PEITKAF--ITSRLQSV---EIIVRDGL---DD--------PLDDT 431 (1082)
T ss_pred ------CcccCCC----------hHHHhhhc---HHHHHHH--HHHHhhhh---heecccCC---CC--------cchhh
Confidence 4422111 33444442 1111111 11111111 11112211 10 12233
Q ss_pred hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc--------C--CccccchhhH-H---HHHHHhhhCC-----CC
Q 036770 453 DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS--------G--EDWTWNNLNT-L---CWAIGSISGS-----MM 513 (1061)
Q Consensus 453 ~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~--------~--~~~~w~~le~-~---~~algsis~~-----~~ 513 (1061)
+.+. ..-++|.++++..++.|...+.+..++... + ...+-.-.|. + +|.+|.+.|. -.
T Consensus 432 ~~~~---q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgtvV~gk~t~~St 508 (1082)
T KOG1410|consen 432 GAVQ---QQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGTVVGGKTTATST 508 (1082)
T ss_pred HHHH---HHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHHHhcceeccccc
Confidence 2221 234566677777777777666665554321 1 1122222332 3 4456665542 11
Q ss_pred hhH---HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHH-HH--------------------HhHHHHHHH
Q 036770 514 EEQ---ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRF-LR--------------------AHWKFLKTV 569 (1061)
Q Consensus 514 ~~~---e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~-l~--------------------~~~~~L~~v 569 (1061)
++. +.+...+|++ |.++.++..+..-+.++--.+++.+.++.+- +. .+...|..+
T Consensus 509 d~~d~mDgEL~arvlq-l~nlmdsr~~~~~n~rle~ail~f~eqFRk~YvgDQ~~rsSkvY~rl~e~Lgi~de~~~L~vi 587 (1082)
T KOG1410|consen 509 DEHDAMDGELSARVLQ-LVNLMDSRLPLKGNERLELAILHFLEQFRKAYVGDQIQRSSKVYARLSEVLGITDESDVLGVI 587 (1082)
T ss_pred chhhhhhhHHHHHHHH-HHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 111 2355566666 5666665544323333333355555544321 11 134567888
Q ss_pred HHHHHHhh---hcCChhHHHHHHHHHHHHHHH--hhhccc---------ccccCCCchHHHHHHHhHHHhhhcC-CcchH
Q 036770 570 VNKLFEFM---HETHPGVQDMACDTFLKIVQK--CKRKFV---------IVQVGENEPFVSELLSGLATTVADL-EPHQI 634 (1061)
Q Consensus 570 l~~L~~~~---~~~~~~v~~~A~~~f~~i~~~--c~~~l~---------~~~~~e~~p~l~~il~~l~~~~~~l-~~~~~ 634 (1061)
+.|++.-+ .. ++.|-+.....|..++-. ..++++ +.+..|..||+..- .++ +...|
T Consensus 588 v~KI~TNLK~w~~-~e~vi~~tLslf~dLs~GY~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~--------~~~~~~r~R 658 (1082)
T KOG1410|consen 588 VGKILTNLKYWGR-NEPVISLTLSLFNDLSLGYSAVKKLVKLDAVQFMLNNHTSEHFPFLGIN--------IDLQDMRCR 658 (1082)
T ss_pred HHHHHhhcccccC-CchHHHHHHHHHHHHhhhHHHHHHHhcchhhhhHhcccchhhCcccccC--------ccchhhhhH
Confidence 88888744 33 345778888888777643 223333 33344444554221 111 35679
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhh--ChhhHH
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASAL--GTFFLS 712 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~--~~~f~~ 712 (1061)
.++|+|+|.++-.--.++ +..++..|.|+...++.+++..+.| .+..+++++.++.+.|.+.++|-+. ...|..
T Consensus 659 TTFY~al~rLl~~d~sed--e~~fe~fm~PLt~~fe~v~~~~~nn--~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~ 734 (1082)
T KOG1410|consen 659 TTFYTALTRLLMVDLSED--EDMFERFMLPLTDAFEGVLQVFQNN--CFEEEQVKRILIGLCRDLRGIAFASNTKTSYQM 734 (1082)
T ss_pred hHHHHHHHHHHhhccccc--HHHHHHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHhhhhhhhhccchHHHH
Confidence 999999999886533322 3578889999999999888766444 2456667777889999888776554 456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHH--------------------HHHHHHHHHHHHHHhhCCC
Q 036770 713 QISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLR--------------------SVKRETLKLIETFLDKAED 772 (1061)
Q Consensus 713 ~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~--------------------~~~~~il~ll~~~i~~~~~ 772 (1061)
-++++||..+.+.+..- +. | .|.....+|..|.|. .+.|+..+++..|.+++-.
T Consensus 735 LFdWmYP~~mpllq~~V---e~--W-~~~p~vtTPiLklmaE~v~NrsQRL~Fd~SSpngiLLFrEtSKmv~~YG~riL~ 808 (1082)
T KOG1410|consen 735 LFDWMYPEYMPLLQRAV---EK--W-YGCPDVTTPILKLMAELVQNRSQRLKFDVSSPNGILLFRETSKMVSIYGNRILQ 808 (1082)
T ss_pred HHHHhhhhHHHHHHHHH---Hh--c-CCCCccccHHHHHHHHHHhhhHhheecccCCCceeEEehhhhHHHHHHhhHhhc
Confidence 78999998877765432 22 2 233334556655554 3456677777777776644
Q ss_pred hhhhhhcCCCCcchHHHHHHHHHHHHhhhccCC----------CChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHH
Q 036770 773 QPQIGKQNVPDARESEVLSLFATIINKYKGAMI----------DDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLR 842 (1061)
Q Consensus 773 ~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~----------~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~ 842 (1061)
+..+.++.....|...+--+++.+-..+.++.. .-+.+.++....-++++...|+.+|+.+.++||.|+.
T Consensus 809 Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYGD~~l~daL~~fvKm~lsIp~sD~l~Y~Klsqsyy~llE 888 (1082)
T KOG1410|consen 809 LPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYGDSALDDALQTFVKMLLSIPHSDLLSYRKLSQSYYNLLE 888 (1082)
T ss_pred ccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeCchHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHhhHHH
Confidence 443432211111222222334444444444322 2345555555555555556899999999999999999
Q ss_pred HHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 036770 843 AIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 843 ~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~ 892 (1061)
.+++.+...+.++++..|..++.|+.-|++.-+..++.+|+..+..+++-
T Consensus 889 ~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tY 938 (1082)
T KOG1410|consen 889 VLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTY 938 (1082)
T ss_pred HHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877654
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-26 Score=271.75 Aligned_cols=716 Identities=16% Similarity=0.234 Sum_probs=463.4
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
|...+++++..+.+| |+..|++|++.|+..-.++..-.....++..+.++++|.+||..+|..+.+.|+.|+.+.|+.|
T Consensus 2 ~~~~l~qLl~~l~sp-Dn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 2 DSAPLEQLLQQLLSP-DNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred chhHHHHHHHHhcCC-CchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 557899999999998 5558999999999666655577778889989999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhcc
Q 036770 94 KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDF 172 (1061)
Q Consensus 94 r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~ 172 (1061)
|..|+..+.+.. ...||+|+|.++|.|++.+.|..||+.++-++++.++. +..++.++.||..+++-+..
T Consensus 81 ks~lL~~~~~E~--------~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~- 151 (1075)
T KOG2171|consen 81 KSSLLEIIQSET--------EPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN- 151 (1075)
T ss_pred HHHHHHHHHhcc--------chHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-
Confidence 999999988742 36799999999999999999999999999999999874 57899999999999997543
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchH
Q 036770 173 SRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRN 252 (1061)
Q Consensus 173 ~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~ 252 (1061)
. +..++..+..++.+++...+++ ++..+++++.+|+...+.+ +...+.+-.
T Consensus 152 ---~------------~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~----~~~~~~~~~--------- 202 (1075)
T KOG2171|consen 152 ---T------------LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENN----KSEVDKFRD--------- 202 (1075)
T ss_pred ---c------------cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccc----hHHHHHHHH---------
Confidence 1 1236778888999999887776 8899999999988765511 111111110
Q ss_pred HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccch
Q 036770 253 LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQ 332 (1061)
Q Consensus 253 ~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~ 332 (1061)
+...++..+...+ ..+|.+-....-..+.++++...+++.
T Consensus 203 ------------------------llP~~l~vl~~~i-------------~~~d~~~a~~~l~~l~El~e~~pk~l~--- 242 (1075)
T KOG2171|consen 203 ------------------------LLPSLLNVLQEVI-------------QDGDDDAAKSALEALIELLESEPKLLR--- 242 (1075)
T ss_pred ------------------------HhHHHHHHhHhhh-------------hccchHHHHHHHHHHHHHHhhchHHHH---
Confidence 1111111111111 112222233333444555554444442
Q ss_pred hhHHHHHHHHHHHHHhhccC--hhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhh
Q 036770 333 ENISALLMGLEYLINISYVD--ETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRR 410 (1061)
Q Consensus 333 ~~~~~~~~~l~~ll~~~~~~--d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 410 (1061)
+.+...+++.+++.... |+.+=..+++|-..+.+.- | ...
T Consensus 243 ---~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A------------------------p-----------~~~ 284 (1075)
T KOG2171|consen 243 ---PHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA------------------------P-----------AMC 284 (1075)
T ss_pred ---HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh------------------------H-----------HHh
Confidence 22334457777766544 3455567788888877641 1 111
Q ss_pred hhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHh-cCCHHhHHHHHHHHHHhhcc
Q 036770 411 QLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLS-HLDHEDTEKQMLKKLSKQLS 489 (1061)
Q Consensus 411 ~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~-~l~~~~~~~~i~~~L~~~~~ 489 (1061)
..+.++..+|+.+++.-|..-++...|.++|.+ .|.+.-.-|.....++..++ +|.+..+...+++.+...+.
T Consensus 285 k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~------ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 285 KKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDL------DEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQ 358 (1075)
T ss_pred hhchhhhccHHHHHHHhcCCcccchhhcccccc------ccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhc
Confidence 123445666776666655422222123221111 01110112445677788776 78888888888888887763
Q ss_pred CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH-----HHHHhHH
Q 036770 490 GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR-----FLRAHWK 564 (1061)
Q Consensus 490 ~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~-----~l~~~~~ 564 (1061)
+.+|....|++-|+|+|++.-.... ..-++++++.+++...+ +.++|+-..+..+||.+. +-+.|.+
T Consensus 359 --S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 359 --STEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred --CCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 3589999999999999997654332 44788899988776654 556666667789999744 3355666
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHH-hHHHhhhcCCcchHHHHHHHHhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLS-GLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~-~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.+++.+-.+++ ...+++|+..|+.++..+...|.+.... ||++.+++ .+......-++..+..+.-|||.
T Consensus 431 ~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~~~~~~l~-------pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 431 RLPPALIALLD--STQNVRVQAHAAAALVNFSEECDKSILE-------PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIAS 501 (1075)
T ss_pred hccHHHHHHhc--ccCchHHHHHHHHHHHHHHHhCcHHHHH-------HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 66665555554 3346799999999999999999887665 79999998 66555555566778888999999
Q ss_pred hhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhC-hhhHHHHHHHHHHHH
Q 036770 644 MIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALG-TFFLSQISVIFLDML 722 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~-~~f~~~~~~i~~~ll 722 (1061)
+..+.... ...|..++|..+.. ++++. .+.+...--...++|++.++.+.| ..|.|..+.+..-+.
T Consensus 502 vA~AA~~~--F~pY~d~~Mp~L~~----~L~n~-------~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~ 568 (1075)
T KOG2171|consen 502 VADAAQEK--FIPYFDRLMPLLKN----FLQNA-------DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLL 568 (1075)
T ss_pred HHHHHhhh--hHhHHHHHHHHHHH----HHhCC-------CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHH
Confidence 88776543 35789998886654 44433 122222223555889999999999 578887776665444
Q ss_pred HHHHHHHHHHHHhHhcCCCC--ccchhhhHHHHHHHHHHHHHHHHHHhhC-------CC-----hhhh--hh--------
Q 036770 723 NVYKMYSELISSSISSGGPF--ASKTSYVKLLRSVKRETLKLIETFLDKA-------ED-----QPQI--GK-------- 778 (1061)
Q Consensus 723 ~~y~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~il~ll~~~i~~~-------~~-----~~~l--~~-------- 778 (1061)
..- .+. ...+.+. -.-....|..+.+++...+++...+.-. ++ .... .+
T Consensus 569 ~~~--~~~-----~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 569 ELQ--GSD-----QDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred hhc--ccc-----hhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 321 000 0000000 0011223556666666555544433211 00 0000 00
Q ss_pred --cCC-------CC-cchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhc
Q 036770 779 --QNV-------PD-ARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHC 848 (1061)
Q Consensus 779 --~~~-------~~-~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~ 848 (1061)
.+. .. .........++.+....+..+.|++.+++. ++-+ ++ .+..|-.+|.++.+.+-.+++..
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~-l~v~---~l--~f~fhdgVR~aa~~~~p~ll~~~ 715 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVE-LMVP---LL--KFYFHDGVRKAAAESMPQLLTCA 715 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHH---HH--HhhhhhHHHHHHHHHHHHHHHHH
Confidence 000 00 011234556666666677778888888777 2211 11 22345568999888888877753
Q ss_pred hhHhhcCC---hHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHhccc
Q 036770 849 FPALIRLS---SQQLKLVMDSIIWAFRH-TERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 849 ~~~l~~~~---~~~~~~~~~~i~~~~~~-~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
--.....| ......++.+.+-++.. +++++.-..++.+.+.++..|.
T Consensus 716 ~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~ 766 (1075)
T KOG2171|consen 716 LKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGD 766 (1075)
T ss_pred HHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCc
Confidence 33222333 23556666666666655 7888888888888888888874
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=2.5e-23 Score=225.67 Aligned_cols=660 Identities=15% Similarity=0.166 Sum_probs=410.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHc-cCCChHHHHHHHHHHHHHHh-----------cccCCCCHHHHHH
Q 036770 27 GTGSKEERTAADQILRDLQNNPD--MWLQVVHILQ-NSKNLNTKFFALQVLEGVIK-----------YRWNALPVEQRDG 92 (1061)
Q Consensus 27 ~~~~~~~r~~A~~~L~~fq~s~~--aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~-----------~~w~~l~~e~~~~ 92 (1061)
+| ||..|..|+..|.++++... .-....+.|. ..++++.|..|..+|+|.+. .+|..++.|.|+.
T Consensus 16 sp-D~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~q 94 (858)
T COG5215 16 SP-DPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQ 94 (858)
T ss_pred CC-CCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHH
Confidence 44 66689999999999998763 2334445554 45579999999999999886 5799999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCCh--hHHHHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTSE--TICENCMAILKLLSEEV 169 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~~l~EEv 169 (1061)
+|...+..+.+. .+ -+-+-.+++++.|+..+.|+ .||.++..++......+ +.....|.++...+|-.
T Consensus 95 vK~~al~aL~s~--ep-------r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~ 165 (858)
T COG5215 95 VKGMALRALKSP--EP-------RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE 165 (858)
T ss_pred HHHHHHHHhcCC--cc-------HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc
Confidence 999999888652 11 24477889999999999997 79999999999987653 33444788889888853
Q ss_pred hccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc---hhhHHHHHhhCC
Q 036770 170 FDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE---SPLLETLLKFFP 246 (1061)
Q Consensus 170 ~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~---~~ll~~l~~~L~ 246 (1061)
+.+.+.+ ..-.-++.++...+.+..+..++.++|+||-.-+.++.-+.-.+ +-+++..+...+
T Consensus 166 ---~Pe~li~-----------~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 166 ---APEDLIQ-----------MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred ---CHHHHHH-----------HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhcc
Confidence 1111111 12223455666666666677888999999987555444332111 467777776655
Q ss_pred --CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH-HHHHHHHHHHHH
Q 036770 247 --MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ-NLALFFTSFFKF 323 (1061)
Q Consensus 247 --~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~-~l~~l~~~~~~~ 323 (1061)
+.++..+|..||+.|+.+ |++. |. . +++ .++
T Consensus 232 ~~d~e~q~aafgCl~kim~L-----yY~f--------m~--------------~----------ymE~aL~--------- 265 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMML-----YYKF--------MQ--------------S----------YMENALA--------- 265 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHH-----HHHH--------HH--------------H----------HHHHHHH---------
Confidence 456889999999999886 3331 11 0 111 111
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH---hccCCCcccccccCCCCCCCCchhhh
Q 036770 324 HIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA---HNNLENPAVTANMMGLPMPLLPSVVD 400 (1061)
Q Consensus 324 ~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~---~~~~~~~~~~~~~~g~~~~~~~~~l~ 400 (1061)
.++.+....++++|...+.|||++++++-.+- .+..|. .| ..
T Consensus 266 -------------------alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe----~p------------~q 310 (858)
T COG5215 266 -------------------ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE----VP------------AQ 310 (858)
T ss_pred -------------------HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc----Cc------------hh
Confidence 22222335567789999999999998764321 111121 11 12
Q ss_pred hhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHH
Q 036770 401 GIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQM 480 (1061)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i 480 (1061)
+|+ -.+....+++..|+ +-+.+..|. . + .|+|+..+....||...+++..+.+..-+
T Consensus 311 n~~----fa~aav~dvlP~lL----~LL~~q~ed--~---~----------~DdWn~smaA~sCLqlfaq~~gd~i~~pV 367 (858)
T COG5215 311 NHG----FARAAVADVLPELL----SLLEKQGED--Y---Y----------GDDWNPSMAASSCLQLFAQLKGDKIMRPV 367 (858)
T ss_pred hcc----hHHHHHHHHHHHHH----HHHHhcCCC--c---c----------ccccchhhhHHHHHHHHHHHhhhHhHHHH
Confidence 221 12222244444444 444433221 0 1 12356667788999998888777777767
Q ss_pred HHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH
Q 036770 481 LKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR 560 (1061)
Q Consensus 481 ~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~ 560 (1061)
+..+.+.+. ..+|+++|++..|+|||.....++.-..++++.++.+.++.. |+..-+.++..|++|+.++++.
T Consensus 368 l~FvEqni~--~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-----D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 368 LGFVEQNIR--SESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-----DSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred HHHHHHhcc--CchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-----cceeehhhHHHHHHHHHHHHHH
Confidence 777776553 468999999999999999887666667888999998887654 3556677878899999999987
Q ss_pred H--hH-HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC--CcchHH
Q 036770 561 A--HW-KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL--EPHQIH 635 (1061)
Q Consensus 561 ~--~~-~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l--~~~~~~ 635 (1061)
. +| .+|...+.+.+-++.+ +|.+...+|+++..++....+.- .++++-..||+..|++.+-..+... ++..|.
T Consensus 441 ~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~-~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~ 518 (858)
T COG5215 441 MIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAV-REVESFLAKFYLAILNALVKGTELALNESNLRV 518 (858)
T ss_pred HhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhh-ccccchhHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 5 34 3889999999988766 68899999999999987644322 2233444578888888776554322 455688
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHH-HHHHhHHHHHHhhhChhhHHHH
Q 036770 636 TFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTV-LNILQTNTSVASALGTFFLSQI 714 (1061)
Q Consensus 636 ~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i-~~il~~~~~i~~~~~~~f~~~~ 714 (1061)
.+|+|+|.+|.-.|+.. ...+..+......++++.++-..+-. ..+|......+ .+++..+.++.+..+.+..+.-
T Consensus 519 s~fsaLgtli~~~~d~V--~~~~a~~~~~~~~kl~~~isv~~q~l-~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~ 595 (858)
T COG5215 519 SLFSALGTLILICPDAV--SDILAGFYDYTSKKLDECISVLGQIL-ATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE 595 (858)
T ss_pred HHHHHHHHHHhhcchhH--HHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH
Confidence 99999999999888743 34666666666677777665432111 11233333333 5666677777676665443332
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHHHHH
Q 036770 715 SVIFLDMLNVYKMY-SELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESEVLS 791 (1061)
Q Consensus 715 ~~i~~~ll~~y~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~~L~ 791 (1061)
..++.-++.+.... +..+. |+. -.+....+..+.+ -++.|.+++.+. +...-....+ ...+..
T Consensus 596 D~lm~Lf~r~les~~~t~~~------~dV--~~aIsal~~sl~e----~Fe~y~~~fiPy--l~~aln~~d~~v~~~avg 661 (858)
T COG5215 596 DQLMELFIRILESTKPTTAF------GDV--YTAISALSTSLEE----RFEQYASKFIPY--LTRALNCTDRFVLNSAVG 661 (858)
T ss_pred HHHHHHHHHHHhccCCchhh------hHH--HHHHHHHHHHHHH----HHHHHHhhhhHH--HHHHhcchhHHHHHHHHH
Confidence 33333222222211 00000 000 0000111112222 233333333221 1100001111 134678
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHH
Q 036770 792 LFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIA 845 (1061)
Q Consensus 792 l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~ 845 (1061)
+.+.+...++.++.++-+.++..+.+|.- . ...+-|++-.-....+.|.
T Consensus 662 lvgdlantl~~df~~y~d~~ms~LvQ~ls----s-~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 662 LVGDLANTLGTDFNIYADVLMSSLVQCLS----S-EATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhc----C-hhhccccchHHHHHHHHHH
Confidence 88888888888888887777777776632 1 1233445544444444443
No 12
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6e-17 Score=188.65 Aligned_cols=577 Identities=17% Similarity=0.242 Sum_probs=337.6
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcccCC-------
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWNA------- 84 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~w~~------- 84 (1061)
+|.+.+.+++.+-.++ ||+.|+.|++.|+++++.|.....+.+|..... +..||.-|+..|||+|.+.|..
T Consensus 1 md~~~l~~~~~~T~d~-d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~ 79 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDS-DAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRP 79 (1010)
T ss_pred CChHHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCc
Confidence 3677788888887777 588999999999999999999999999997665 4578999999999999999974
Q ss_pred --CCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHH
Q 036770 85 --LPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAI 161 (1061)
Q Consensus 85 --l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~i 161 (1061)
+++++|..+|+.++..+.+- +.++|..+..++..|++.+||..||++++-+-..+++++ +..-.+|.+
T Consensus 80 ~~I~e~dk~~irenIl~~iv~~---------p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~ 150 (1010)
T KOG1991|consen 80 FGIPEEDKAVIRENILETIVQV---------PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLC 150 (1010)
T ss_pred CCCChHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHH
Confidence 58899999999999998762 467999999999999999999999999999999998875 344456777
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhcccc-cCcchhcc---h
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS--QRTDLIRATLSTLHAFLSW-IPLGYIFE---S 235 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~--~~~~l~~~~L~~l~~~l~w-i~~~~i~~---~ 235 (1061)
|..|+.- ..+.+ ..+|+.+...+..-+|.|.+...+++... ...++.+..|+.+.+++.+ +|...+.. +
T Consensus 151 l~qL~k~-ye~k~----~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 151 LYQLFKT-YEWKK----DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHH-Hhhcc----ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 7766552 22322 24577788888889999999999998764 3467889999999988875 44433222 3
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcC--Ccc--h-H-HHHHHHHHHHHHHHHhhCCCCCChhhhhcC---CCcch
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNF--GDF--Y-N-VQYVNMYNVFMVQLQTILPPTTNIPEAYAH---GNSEE 306 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~--~~~--~-~-~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~---~~~~d 306 (1061)
.+++++...++-|-- .|.....+ ++. . . +|-. + .++.. ++ +.|.. ...+-
T Consensus 226 ~W~~l~l~i~~rpvP--------~E~l~~d~e~R~~~~wwK~KKWa-~--~~L~R---lf-------~Ryg~~~~~~~~y 284 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVP--------VEVLSLDPEDRSSWPWWKCKKWA-L--HILNR---LF-------ERYGSPSLVVPEY 284 (1010)
T ss_pred HHHHHHHHHHcCCCC--------hhcccCChhhcccccchhhHHHH-H--HHHHH---HH-------HHhCCccccchhh
Confidence 455555544432100 00011100 000 0 0 0100 0 01111 11 11110 11122
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCccccc
Q 036770 307 QAFIQNLAL-FFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTA 385 (1061)
Q Consensus 307 ~~~~~~l~~-l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~ 385 (1061)
.+|.+.+.. ++..+.+.++++++.-.+ +. .-.+++-...+.|...-+..
T Consensus 285 ~~Fa~~f~~n~~~~ile~~lk~l~~~~~--~~-------------yls~rvl~~~l~fl~~~Vs~--------------- 334 (1010)
T KOG1991|consen 285 KEFAQMFLKNFAQGILEVFLKILEQWRQ--QL-------------YLSDRVLYYLLNFLEQCVSH--------------- 334 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cc-------------cCCHHHHHHHHHHHHHhccH---------------
Confidence 334443322 444444555555553221 00 00112222233332221110
Q ss_pred ccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHH-HHHHhhCCCcccc-ccccCCchhHHhh--------hcchhhH
Q 036770 386 NMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRM-LMICRMAKPEEVL-IVEDENGNIVRET--------MKDNDVL 455 (1061)
Q Consensus 386 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~-~li~km~~p~e~~-~~~~d~~e~~~e~--------~~d~~~~ 455 (1061)
...+...+|.+.-++. ++..-|.+-++.. .|++|-.|-.|.+ ..|+.+.
T Consensus 335 ---------------------~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~ 393 (1010)
T KOG1991|consen 335 ---------------------ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAAL 393 (1010)
T ss_pred ---------------------HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHH
Confidence 0111222333333222 2233344433332 3777766665543 1222211
Q ss_pred HHHHHHHHHHHHHhcCC----HHhHHHHHHHHHHhhcc--CCccccchhhHHHHHHHhhhCCCChh-----HHhHHHH-H
Q 036770 456 VQYKIMRETLIYLSHLD----HEDTEKQMLKKLSKQLS--GEDWTWNNLNTLCWAIGSISGSMMEE-----QENRFLV-M 523 (1061)
Q Consensus 456 ~ly~~~~~~L~~l~~l~----~~~~~~~i~~~L~~~~~--~~~~~w~~le~~~~algsis~~~~~~-----~e~~~l~-~ 523 (1061)
..+..++.-- -..+++.+.+.|.+... .+..+.+.-+.++..+|++++-+... .-..|+. -
T Consensus 394 -------~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h 466 (1010)
T KOG1991|consen 394 -------DFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH 466 (1010)
T ss_pred -------HHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence 1111111111 12344556666664431 24456788899999999999644322 1123332 2
Q ss_pred HHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHhhhc
Q 036770 524 VIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMH-ETHPGVQDMACDTFLKIVQKCKRK 602 (1061)
Q Consensus 524 vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~-~~~~~v~~~A~~~f~~i~~~c~~~ 602 (1061)
|++.+ +-+ --..++-.+|++++|++-==..+..+..++.....+|. +.+--|+--|+.|+..+...|...
T Consensus 467 VfP~f-~s~--------~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 467 VFPEF-QSP--------YGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred hhHhh-cCc--------hhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhh
Confidence 33322 211 11234447899999984322345566677777777665 444458999999999999998854
Q ss_pred ---ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhcc
Q 036770 603 ---FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQS 679 (1061)
Q Consensus 603 ---l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~ 679 (1061)
+. |++..+++.+-.+....+.+....++|.+. ..-+. +-..+-..|++-+.+.+-++++.. +
T Consensus 538 ~e~~~--------~hvp~~mq~lL~L~ne~End~Lt~vme~iV---~~fse--ElsPfA~eL~q~La~~F~k~l~~~--~ 602 (1010)
T KOG1991|consen 538 DEKVS--------AHVPPIMQELLKLSNEVENDDLTNVMEKIV---CKFSE--ELSPFAVELCQNLAETFLKVLQTS--E 602 (1010)
T ss_pred hhhHh--------hhhhHHHHHHHHHHHhcchhHHHHHHHHHH---HHHHH--hhchhHHHHHHHHHHHHHHHHhcc--C
Confidence 33 366777777666666666666666666553 22222 123455666776666766666531 1
Q ss_pred ccccCCHHHHHHHHHHHhHHHHHHhhhC
Q 036770 680 VDFLKDQDVIRTVLNILQTNTSVASALG 707 (1061)
Q Consensus 680 ~~~~~d~~~~~~i~~il~~~~~i~~~~~ 707 (1061)
...-.+.+..-.+..+|++..++-.++.
T Consensus 603 ~~~~~~ddk~iaA~GiL~Ti~Til~s~e 630 (1010)
T KOG1991|consen 603 DEDESDDDKAIAASGILRTISTILLSLE 630 (1010)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 1111223333346778888777766554
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.87 E-value=1.9e-21 Score=192.63 Aligned_cols=145 Identities=34% Similarity=0.640 Sum_probs=135.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH
Q 036770 114 ERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEF 193 (1061)
Q Consensus 114 ~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~ 193 (1061)
+++|++|+|.+++.|++++||+.||+|++++++.+++++..+.++|++|+.++||+.++.+..+...||+++++.|++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999899999999999999999886557788999999999999999
Q ss_pred HHHHHHHHHHHhhcCc---HHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchHHHHHHH
Q 036770 194 QLIHELCLYVLSASQR---TDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCL 258 (1061)
Q Consensus 194 ~~I~~~~~~~L~~~~~---~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~~a~~cL 258 (1061)
+.|++++.++++...+ +++...+|+|+++|++|+|++.+.++++++.++++|++|++++.|++||
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999998654 8899999999999999999999999999999999999999999999997
No 14
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.9e-14 Score=162.75 Aligned_cols=720 Identities=14% Similarity=0.205 Sum_probs=353.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcccC-------CC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYRWN-------AL 85 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~w~-------~l 85 (1061)
|++.+-+.+..-.+| ||+.|+.|++.|++....+..-.....++.+++ +.++|.-|+..++|.|+++|. .+
T Consensus 3 ~le~l~~~l~qTl~p-dps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 3 NLETLANYLLQTLSP-DPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred cHHHHHHHHHhcCCC-CCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 445555555554444 677899999999999998766556677777666 889999999999999999995 57
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLL 165 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l 165 (1061)
.+++++.||.-++..+.+. +.-|..+++.++..|+++++|+.||+.++|+++..++++-...++.. ..
T Consensus 82 ~~~~~e~ikslIv~lMl~s---------~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL---~t 149 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSS---------PFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVL---VT 149 (960)
T ss_pred chhHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHH---HH
Confidence 7889999999999988652 13466789999999999999999999999999999977533332221 23
Q ss_pred HHHHhc-c----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHH----HHHhc--ccccCcchhc
Q 036770 166 SEEVFD-F----SRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLS----TLHAF--LSWIPLGYIF 233 (1061)
Q Consensus 166 ~EEv~~-~----~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~----~l~~~--l~wi~~~~i~ 233 (1061)
.+-+|+ + .++.+= .-.+...+.+..-+..+|.-..+..+... +....+..+. |.+-| +.+-++..++
T Consensus 150 ahsiFkr~R~efrSdaL~-~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFF 228 (960)
T KOG1992|consen 150 AHSIFKRYRPEFRSDALW-LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFF 228 (960)
T ss_pred HHHHHHhcCcccccHHHH-HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 333443 2 111111 11223334444445555555555444322 2221111111 11111 2233444455
Q ss_pred c---hhhHHHHHhhCC--Cccch---------HHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhh
Q 036770 234 E---SPLLETLLKFFP--MPSYR---------NLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAY 299 (1061)
Q Consensus 234 ~---~~ll~~l~~~L~--~~~~~---------~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~ 299 (1061)
+ ..+++.++++|. +|.+. +.--.-+||++.+... +|++.+..+...++..++
T Consensus 229 Ednm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~-kYeEef~~fl~~fv~~~W------------- 294 (960)
T KOG1992|consen 229 EDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYAT-KYEEEFQPFLPDFVTATW------------- 294 (960)
T ss_pred HhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHH-hhHHHHHhhHHHHHHHHH-------------
Confidence 4 355555555543 22111 0111112222222110 122211111111111111
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccCh-hhHHHHHHHHHHHHHHHHHHHhccC
Q 036770 300 AHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDE-TEVFKVCLDYWNSFVLELFDAHNNL 378 (1061)
Q Consensus 300 ~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d-~ei~~~~l~fW~~l~~~l~~~~~~~ 378 (1061)
.+|...+..+- +-....++.|....++.-+...
T Consensus 295 -------------------------------------------~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~--- 328 (960)
T KOG1992|consen 295 -------------------------------------------NLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAE--- 328 (960)
T ss_pred -------------------------------------------HHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHh---
Confidence 11222222221 1122333444444432210000
Q ss_pred CCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHH-HHHHhhC-CCccccccccCCchhHHhhhcchhhHH
Q 036770 379 ENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRM-LMICRMA-KPEEVLIVEDENGNIVRETMKDNDVLV 456 (1061)
Q Consensus 379 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~-~li~km~-~p~e~~~~~~d~~e~~~e~~~d~~~~~ 456 (1061)
++ . -..++.++.. +++..+. +++|....||+--|-.|..++.+|.=.
T Consensus 329 --------~F-----------~------------~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdT 377 (960)
T KOG1992|consen 329 --------LF-----------E------------GENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDT 377 (960)
T ss_pred --------hh-----------c------------chHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcch
Confidence 00 0 0111111111 1111111 122222233333344444333222111
Q ss_pred HHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHHHhhhCC--------CChh---HHhHHH
Q 036770 457 QYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGS--------MMEE---QENRFL 521 (1061)
Q Consensus 457 ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~algsis~~--------~~~~---~e~~~l 521 (1061)
.++...+.+..|+......+..+ +...|++...+++.+|..-+.+.|.+.+++-. .... .-.+|+
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff 457 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF 457 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence 22223333333332211111112 22233333346778999999988888777621 1100 012343
Q ss_pred -HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh--HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 522 -VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 522 -~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~--~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
.++.+.|.+ +. +.+.+.+-+..+- |.--++++ +++|-..+..+..|+..+...|-..|+.++-++-.-
T Consensus 458 ~~~ilp~L~s-~~---vn~~pilka~aIK-----y~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~v 528 (960)
T KOG1992|consen 458 ANQILPDLLS-PN---VNEFPILKADAIK-----YIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTV 528 (960)
T ss_pred HHHhhHHhcc-Cc---cccccchhhcccc-----eeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhcccc
Confidence 445555543 11 1123333333343 33334443 578888999999988766678889999999998877
Q ss_pred hhh---cccccccCCCchHHHHHHHhHHHhhhcCCc-chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHH
Q 036770 599 CKR---KFVIVQVGENEPFVSELLSGLATTVADLEP-HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIA 674 (1061)
Q Consensus 599 c~~---~l~~~~~~e~~p~l~~il~~l~~~~~~l~~-~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~ 674 (1061)
|.. ++.. +....||+..++.++-... .++. ....++++||-.+++..+..-. .+.. .+...+.+++.
T Consensus 529 re~~~~~if~--~~~iap~~~~ll~nLf~a~-s~p~~~EneylmKaImRii~i~~~~i~--p~~~----~~l~~Lteiv~ 599 (960)
T KOG1992|consen 529 RENSNAKIFG--AEDIAPFVEILLTNLFKAL-SLPGKAENEYLMKAIMRIISILQSAII--PHAP----ELLRQLTEIVE 599 (960)
T ss_pred ccCccccccc--hhhcchHHHHHHHHHHHhc-cCCcccccHHHHHHHHHHHHhCHHhhh--hhhh----HHHHHHHHHHH
Confidence 765 2322 3467789888887775332 2332 3467899999999988764321 2333 33334444555
Q ss_pred HHhccccccCCHHHHHHHHHHHhHHHH----HHhhhC-------hhhHHHHHHHH-HHHHHHHHHHHHHHHHhHhcCCC-
Q 036770 675 QARQSVDFLKDQDVIRTVLNILQTNTS----VASALG-------TFFLSQISVIF-LDMLNVYKMYSELISSSISSGGP- 741 (1061)
Q Consensus 675 ~~~~~~~~~~d~~~~~~i~~il~~~~~----i~~~~~-------~~f~~~~~~i~-~~ll~~y~~~~~~i~~~~~~~g~- 741 (1061)
....|| .+|.- -|++++..+. .|+.-+ ....|.+..|+ .|+.+.+.-..+++..-+...+.
T Consensus 600 ~v~KNP---s~P~f---nHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ 673 (960)
T KOG1992|consen 600 EVSKNP---SNPQF---NHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGT 673 (960)
T ss_pred HHhcCC---CCchh---HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 545555 34432 2344443322 233221 12223333332 23333333333333333332222
Q ss_pred Cc-cchhhhHHHH--------HHHHHHHHHHHHHHhhCCCh-------hhhh---hc-CCCCcchHHHHHHHHHHHHhhh
Q 036770 742 FA-SKTSYVKLLR--------SVKRETLKLIETFLDKAEDQ-------PQIG---KQ-NVPDARESEVLSLFATIINKYK 801 (1061)
Q Consensus 742 ~~-~~~~~~~~~~--------~~~~~il~ll~~~i~~~~~~-------~~l~---~~-~~~~~r~~~~L~l~~~li~~~~ 801 (1061)
.. .-.+....+. .--....++++.++.+.... ..+. +. ..+.+-+..-.+++..++..+.
T Consensus 674 ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~ 753 (960)
T KOG1992|consen 674 IPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIP 753 (960)
T ss_pred CchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCC
Confidence 10 0011111110 00112345566666544211 0000 00 1111223344566666666554
Q ss_pred cc-CCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhh-----cCChHHHHHHHHHHH
Q 036770 802 GA-MIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALI-----RLSSQQLKLVMDSII 868 (1061)
Q Consensus 802 ~~-~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~-----~~~~~~~~~~~~~i~ 868 (1061)
.. ..+++..|+..+|++.- + ..-|...+.|.-|+..++.+.-...+ ...+..|..+++.++
T Consensus 754 ~~~~~py~k~i~~llf~Rlq----n--skT~kf~k~~~vF~~~~~ik~~~~~l~e~~d~IQ~~~fg~l~e~~i 820 (960)
T KOG1992|consen 754 PNELAPYMKQIFGLLFQRLQ----N--SKTEKFVKSFIVFFSLFTIKKGGLMLAEVIDGIQPGMFGMLLENFI 820 (960)
T ss_pred HhhhhHHHHHHHHHHHHHHh----c--cCcHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchhHHHHHHHHhc
Confidence 42 35677777777776643 1 35567778888888777665433322 234566777777654
No 15
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.74 E-value=2.4e-12 Score=148.88 Aligned_cols=141 Identities=16% Similarity=0.310 Sum_probs=111.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccCC----------CCHH
Q 036770 20 ATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWNA----------LPVE 88 (1061)
Q Consensus 20 ~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~~----------l~~e 88 (1061)
..+....++ |+..|.+|+.-|.++-.+++.-.....+..+ ..+...|.+|+..|+..|.+.|.. -+.+
T Consensus 8 ~~L~~~ls~-d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~~~~e~ 86 (1005)
T KOG2274|consen 8 ELLSGSLSA-DQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPLIVSEE 86 (1005)
T ss_pred HHHHhhcCC-ChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCCcccHH
Confidence 334444444 7779999999999999988744444444433 356789999999999999999963 3456
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-ChhHHHHHHHHHHHHHH
Q 036770 89 QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-SETICENCMAILKLLSE 167 (1061)
Q Consensus 89 ~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L~iL~~l~E 167 (1061)
.|..||+.|++.+.. ++..+++-.+.+++.|+.-+||+.||..++-++.++++ +.+.....|++|..+..
T Consensus 87 ~K~~IRe~Ll~~l~~---------sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 87 VKALIREQLLNLLDD---------SNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred HHHHHHHHHHhhhhc---------cccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 788999999988762 13567888999999999999999999999999999884 45667778999998888
Q ss_pred HHh
Q 036770 168 EVF 170 (1061)
Q Consensus 168 Ev~ 170 (1061)
|+.
T Consensus 158 ev~ 160 (1005)
T KOG2274|consen 158 EVD 160 (1005)
T ss_pred HHH
Confidence 874
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.7e-10 Score=131.84 Aligned_cols=170 Identities=14% Similarity=0.273 Sum_probs=125.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccC-----CCCHHHHHH
Q 036770 19 DATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN-----ALPVEQRDG 92 (1061)
Q Consensus 19 ~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~-----~l~~e~~~~ 92 (1061)
.+.++..-+| ++..++.|++.|+++++.|..+.....+..+ +.+..+|..|..-++|-|.+.|. +||+|+|..
T Consensus 3 vq~Lq~Ats~-d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~~ 81 (978)
T KOG1993|consen 3 VQVLQQATSQ-DHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKDF 81 (978)
T ss_pred HHHHHHhcCC-CcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHHH
Confidence 3455555455 6668999999999999999998887777654 44679999999999999999995 799999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC----hhHHHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS----ETICENCMAILKLLSEE 168 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~----~~~~~~~L~iL~~l~EE 168 (1061)
||..++.++... +.-+-.+.|.+++.||+-+||..||+.++++.+.+++. +.. ...++|-.+..=
T Consensus 82 iR~~Ll~~~~E~---------~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~--~~~RiLi~l~~i 150 (978)
T KOG1993|consen 82 IRCNLLLHSDEE---------NNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSL--VQHRILITLHHI 150 (978)
T ss_pred HHHHHHHhcccc---------hhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHH--HHHHHHHHHHHH
Confidence 999999987531 23466788999999999999999999999999988753 321 122333333221
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLS 205 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~ 205 (1061)
+ ..+.++|-..-+.++.+-.+.|++++.-++-
T Consensus 151 l-----K~Lat~RL~a~rk~F~el~~~I~~~l~~~l~ 182 (978)
T KOG1993|consen 151 L-----KALATKRLLADRKAFYELAPEILTILAPILW 182 (978)
T ss_pred H-----HHHHHhHHhhhhHHHHHHhHHHHHHHHHHHh
Confidence 1 1233344445556677778888886655543
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.6e-08 Score=121.69 Aligned_cols=361 Identities=14% Similarity=0.130 Sum_probs=213.0
Q ss_pred HHHHHHHHhcCCHHhHHHHHHHHHHhhc----cC-CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhh
Q 036770 461 MRETLIYLSHLDHEDTEKQMLKKLSKQL----SG-EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMT 535 (1061)
Q Consensus 461 ~~~~L~~l~~l~~~~~~~~i~~~L~~~~----~~-~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~ 535 (1061)
-+.+|..|+.+ .+++.+.|...|.+.+ ++ ...+.+..-++|.|+|.++..+.++.++.+-.++.+.|+...+..
T Consensus 365 R~AaL~Als~i-~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 365 RHAALLALSVI-AEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 35566666555 5566666666555443 22 345677778999999999999999988888877887777776654
Q ss_pred cCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHHHHHHHHhh-hcCChhHHHHHHHHHHHHHHHhhhcccccccCCCc
Q 036770 536 KGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTVVNKLFEFM-HETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENE 612 (1061)
Q Consensus 536 ~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~vl~~L~~~~-~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~ 612 (1061)
.+....+.. ..++++ +.++... -..||+.++++++..+ ..+.+.|++.|..++.+++..+..+|.+
T Consensus 444 ~~~rV~ahA---a~al~n-f~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p------- 512 (1075)
T KOG2171|consen 444 QNVRVQAHA---AAALVN-FSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP------- 512 (1075)
T ss_pred CchHHHHHH---HHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-------
Confidence 332222222 222332 2222211 1358899999766644 5667889999999999999999999986
Q ss_pred hHHHHHHHhHHHhhhcCCcc----hHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHH
Q 036770 613 PFVSELLSGLATTVADLEPH----QIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDV 688 (1061)
Q Consensus 613 p~l~~il~~l~~~~~~l~~~----~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~ 688 (1061)
|++.++..+..+...-+.+ -|.+.+|+++.+.-+++.+... .+.+.+++.+...-. +.....|+
T Consensus 513 -Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~eliqll~~~~~--------~~~~~dd~-- 580 (1075)
T KOG2171|consen 513 -YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAEELIQLLLELQG--------SDQDDDDP-- 580 (1075)
T ss_pred -HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHHHHHHHHHhhcc--------cchhhccc--
Confidence 8899988888776654422 3667799999999999865432 355555554332110 10001222
Q ss_pred HHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhcC--------CC--Cccchhhh--
Q 036770 689 IRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELI-------SSSISSG--------GP--FASKTSYV-- 749 (1061)
Q Consensus 689 ~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i-------~~~~~~~--------g~--~~~~~~~~-- 749 (1061)
...+.+..++++|+.+|+.|.|+++.++|.++..-+...+.. ...-... |. ...+++..
T Consensus 581 --~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~e 658 (1075)
T KOG2171|consen 581 --LRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDE 658 (1075)
T ss_pred --cHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHH
Confidence 346777889999999999999999999998875433221110 0000000 10 01111111
Q ss_pred HH--HH-------HHHHHHHHHHHHHHh-hCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhc---cCCCChHHHHHHHH
Q 036770 750 KL--LR-------SVKRETLKLIETFLD-KAEDQPQIGKQNVPDARESEVLSLFATIINKYKG---AMIDDVPRIFEAIF 816 (1061)
Q Consensus 750 ~~--~~-------~~~~~il~ll~~~i~-~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~---~~~~~l~~i~~~l~ 816 (1061)
|. +. .+|....+.++.+.+ ..+.+... -+...|. ..+.++.+++..... ....++.++...++
T Consensus 659 K~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~---fhdgVR~-aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~ 734 (1075)
T KOG2171|consen 659 KETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFY---FHDGVRK-AAAESMPQLLTCALKACQGGPEYLKQLWEAIR 734 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---hhhHHHH-HHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 11 11 112222222222222 00000000 1111222 234444444444433 33447778888888
Q ss_pred HHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhh
Q 036770 817 QCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALI 853 (1061)
Q Consensus 817 ~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~ 853 (1061)
.+.+.-+..+ ..+++..++++-+..+++.|-...+
T Consensus 735 ~~l~~~l~~E--~e~~vl~~vl~~f~~~i~~~G~~~L 769 (1075)
T KOG2171|consen 735 PALIKALEEE--PETEVLSEILESFAECIEVMGDNCL 769 (1075)
T ss_pred HHHHHHhhcC--CcHHHHHHHHHHHHHHHHhcCcccC
Confidence 8877777664 4588899999888888887654443
No 18
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-08 Score=111.55 Aligned_cols=186 Identities=20% Similarity=0.346 Sum_probs=133.5
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccCC-----CCHHHHHHHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWNA-----LPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~~-----l~~e~~~~lr~~ll~~l~~ 103 (1061)
|+..|..|+..|.++++.|.....|.++++.. .+.++|.-|+..++|+|.+.|.+ .+++.+...|..+++-+..
T Consensus 16 da~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~lienil~ 95 (970)
T COG5656 16 DAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLIENILD 95 (970)
T ss_pred CcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHHHHHHH
Confidence 77789999999999999999999999999765 47899999999999999999986 3455667777777766655
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQK 181 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r 181 (1061)
.+.. ++.+.|+.+..+++.|+-.+|| +.|+ +++-..+.+++++ ...-.+|.++..+ ++.-+=++. .+
T Consensus 96 v~l~-----sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el----fkayRwk~n-de 164 (970)
T COG5656 96 VFLY-----SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL----FKAYRWKYN-DE 164 (970)
T ss_pred HHhc-----CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH----HHHHhhhcc-ch
Confidence 4322 2355677888999999999999 6899 8899888888775 3455566655544 432121222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CcHHHHHHHHHHHHhcccc
Q 036770 182 IKELKQSLNSEFQLIHELCLYVLSAS--QRTDLIRATLSTLHAFLSW 226 (1061)
Q Consensus 182 ~~~l~~~l~~~~~~I~~~~~~~L~~~--~~~~l~~~~L~~l~~~l~w 226 (1061)
|..+..-+..-+|.+.++-.++.... ...++....|+.+++++-.
T Consensus 165 q~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~ 211 (970)
T COG5656 165 QVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY 211 (970)
T ss_pred HhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh
Confidence 44444444455666655555554421 3567888899988877653
No 19
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.31 E-value=7.4e-08 Score=112.91 Aligned_cols=204 Identities=14% Similarity=0.292 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHcc-CCChHHHHHHHHHHHHHHhcccC-----CCCHHHHHHHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVVHILQN-SKNLNTKFFALQVLEGVIKYRWN-----ALPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~-s~~~~~rffaa~~L~~~I~~~w~-----~l~~e~~~~lr~~ll~~l~~ 103 (1061)
+|..++.|++-|+++.+.++.-.....+..+ +.+..+|.-|+.-++|.|.+.|. .+.++++..||..++..+.+
T Consensus 17 ~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~v~IR~~l~~lii~ 96 (947)
T COG5657 17 DPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDENVLIRDELFSLIIS 96 (947)
T ss_pred CCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccchHHHHHHHHHHHc
Confidence 4557999999999999999855555555443 45779999999999999999996 46777778999999999987
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQKI 182 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~ 182 (1061)
..+ +.++ +.+.+++.|+.-+||+.||+.++|+++.++.++ ....+.++.+..+..+..+. -|-
T Consensus 97 s~n-------~l~i--q~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~l-------~Rs 160 (947)
T COG5657 97 SSN-------QLQI--QNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRRL-------FRS 160 (947)
T ss_pred ccc-------hHHH--HHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhhh-------hcc
Confidence 321 2333 788999999999999999999999999998743 23334444444443333221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC---------c---HHHHHHHHHHHHhccc--ccCcchhcc---hhhHHHHHhhC
Q 036770 183 KELKQSLNSEFQLIHELCLYVLSASQ---------R---TDLIRATLSTLHAFLS--WIPLGYIFE---SPLLETLLKFF 245 (1061)
Q Consensus 183 ~~l~~~l~~~~~~I~~~~~~~L~~~~---------~---~~l~~~~L~~l~~~l~--wi~~~~i~~---~~ll~~l~~~L 245 (1061)
. ..+-.-.+.+..++...+-... + -.+-..+|+.++.|.. +-++..+++ +.++..+.+++
T Consensus 161 d---~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~kll 237 (947)
T COG5657 161 D---ALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLL 237 (947)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 1 2233345555555554443321 1 1233456666666654 333334444 24444455555
Q ss_pred C--CccchH
Q 036770 246 P--MPSYRN 252 (1061)
Q Consensus 246 ~--~~~~~~ 252 (1061)
. .+..+.
T Consensus 238 s~~~~~lq~ 246 (947)
T COG5657 238 SYSNPVLQK 246 (947)
T ss_pred hhcchhhhh
Confidence 4 444444
No 20
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.85 E-value=1e-08 Score=88.51 Aligned_cols=66 Identities=29% Similarity=0.633 Sum_probs=61.7
Q ss_pred HHHHHHHHhcC-cccHHHHHHHHc-cCCChHHHHHHHHHHHHHHhcccC--------CCCHHHHHHHHHHHHHHHH
Q 036770 37 ADQILRDLQNN-PDMWLQVVHILQ-NSKNLNTKFFALQVLEGVIKYRWN--------ALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 37 A~~~L~~fq~s-~~aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~~~w~--------~l~~e~~~~lr~~ll~~l~ 102 (1061)
|+++|++++++ |++|..+..++. .+.+..+|++|+.+|++.|+++|. .+|+++|..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 78999999999 899999999994 445899999999999999999999 9999999999999999875
No 21
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=4.4e-05 Score=84.85 Aligned_cols=310 Identities=12% Similarity=0.109 Sum_probs=174.6
Q ss_pred HHHHHHHHhh--hcCChhHHHHHHHHHHHHHHHh-hhcccccccCCCchHHHHHHHhHHHh---hhcCCcchHHHHHHHH
Q 036770 568 TVVNKLFEFM--HETHPGVQDMACDTFLKIVQKC-KRKFVIVQVGENEPFVSELLSGLATT---VADLEPHQIHTFYESV 641 (1061)
Q Consensus 568 ~vl~~L~~~~--~~~~~~v~~~A~~~f~~i~~~c-~~~l~~~~~~e~~p~l~~il~~l~~~---~~~l~~~~~~~l~eai 641 (1061)
-++.|++.-+ .++...+..-|.+++..++.+. +..++. ++ +. +..+...+.+. ...+++..+..++.|+
T Consensus 295 ~ii~kVla~lvn~~sE~~L~~Da~q~l~~lVe~~~~~~vvv-~~---e~-~~~laeq~~s~~~~l~i~s~p~~~~lmkaL 369 (748)
T KOG4541|consen 295 LIIGKVLADLVNGESETALVPDALQSLFVLVEEANNHPVVV-LS---ES-IIKLAEQCLSAEMRLSIFSPPLMEALMKAL 369 (748)
T ss_pred HHHHHHHHHHhcccchhhhhHHHHHHHHHHHHHhccCCeee-cc---HH-HHHHHHHHhccCCcccccCchHHHHHHHHH
Confidence 3444444433 3445566677777777777763 333443 11 11 12222222221 1234566789999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH-HH--
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV-IF-- 718 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~-i~-- 718 (1061)
.....+..+.+.+.++....++|+.+++-..+++.+ ..+.+..|..-+.+..+++++-+.+-.+.+-. ++
T Consensus 370 vl~gfa~~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~-------q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~ 442 (748)
T KOG4541|consen 370 VLWGFAYLDLEEECNLGSNKLQPLPSRFFTYFNQHN-------QGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLS 442 (748)
T ss_pred HHHHHHHhhHHHHHHHHHhhccccHHHHHHHhcccc-------hhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHH
Confidence 998888877778889999999999999877665432 33455667777888888877655443333211 11
Q ss_pred ----HHHHHHHHHHHHHHHHhHhcCCCCccchh-----hhHHHHHHHHHHHHHHHHHHhhCCChh--hhh--hcCCCCcc
Q 036770 719 ----LDMLNVYKMYSELISSSISSGGPFASKTS-----YVKLLRSVKRETLKLIETFLDKAEDQP--QIG--KQNVPDAR 785 (1061)
Q Consensus 719 ----~~ll~~y~~~~~~i~~~~~~~g~~~~~~~-----~~~~~~~~~~~il~ll~~~i~~~~~~~--~l~--~~~~~~~r 785 (1061)
-.++..|+.....+...++..-+.+.|.. ..+. ..+..+++.+++.|-...-..+ ..+ +.... .
T Consensus 443 ~~~c~glm~s~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~-~~ly~sclql~~~y~~~~~~r~rt~~a~~Ee~~s--d 519 (748)
T KOG4541|consen 443 AYGCRGLMASNQYVKDLVAHITSSLVDVSNKSDLYNLAEQPD-IILYVSCLQLERLYGAASATRPRTQRAIYEEGLS--D 519 (748)
T ss_pred HhhhhhHHHHhhccHHHHHHHHHHHHHhhhhhhhhccccChh-HHHHHHHHHHHHHhhhhcccCcchHHHHHHhhhh--H
Confidence 22334444333333222110000000000 0011 1244555666666654331100 000 00000 1
Q ss_pred hHHHHHHHHHHHHhhhccC--CC----ChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHH
Q 036770 786 ESEVLSLFATIINKYKGAM--ID----DVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQ 859 (1061)
Q Consensus 786 ~~~~L~l~~~li~~~~~~~--~~----~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~ 859 (1061)
..-|+.+++.+.+|--... .. ...++.-.=..-++++++++...||+++-.||+++.-++...|+.+-+.+...
T Consensus 520 l~lvl~lL~n~lskdF~~~s~e~~~~~G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l 599 (748)
T KOG4541|consen 520 LNLVLRLLENYLSKDFSSDSIETQSTNGIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKL 599 (748)
T ss_pred HHHHHHHHHHHhhhhhhccccccccccCcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 1236677777666531111 11 11111111124567788889999999999999999999999999998888778
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 860 LKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 860 ~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
++.+.+|+..|++- ++...++....+.+...+.
T Consensus 600 ~~sl~qc~~LGMTg---e~~s~~l~~~~e~v~hfgs 632 (748)
T KOG4541|consen 600 KNSLNQCSGLGMTG---ESHSAGLHTDPEGVFHFGS 632 (748)
T ss_pred HHHHHHhhccCCcc---ccchHhhccChHhhhcccc
Confidence 88888888777762 5666677777777766653
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00087 Score=78.07 Aligned_cols=285 Identities=14% Similarity=0.219 Sum_probs=168.6
Q ss_pred ccchhhHHHHHHHhhhCCCChhHH-hHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH----HHHHh------
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQE-NRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR----FLRAH------ 562 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e-~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~----~l~~~------ 562 (1061)
-|-. .++-|++|+|++...+... ...+..+++.++.-.. ..++++++.+|..-.+.+ =...+
T Consensus 420 l~Vk-dTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~------DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~ 492 (859)
T KOG1241|consen 420 LWVK-DTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN------DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPA 492 (859)
T ss_pred hhhc-chHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh------hCchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 4555 8999999999998764322 3455666665554222 335678888875443332 11112
Q ss_pred HHHHHHHHHHHHHhhhc---CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--cCCcch----
Q 036770 563 WKFLKTVVNKLFEFMHE---THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--DLEPHQ---- 633 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~---~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~l~~~~---- 633 (1061)
..|.+.+++.|+...+. ....+|..|-.++..+++-|.+.-.+. ...+...++..+.+..+ .++-.+
T Consensus 493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~----v~~~~l~il~kl~q~i~~~~l~~~dr~q~ 568 (859)
T KOG1241|consen 493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM----VQKLTLVILEKLDQTISSQILSLADRAQL 568 (859)
T ss_pred chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH----HHHHHHHHHHHHHHHHHHHhccHhhHHHH
Confidence 14778899999985531 234589999999999997665433220 00134444454444332 333222
Q ss_pred ---HHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhh
Q 036770 634 ---IHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFF 710 (1061)
Q Consensus 634 ---~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f 710 (1061)
+..+.-.++.++..++.+ ..+..+.+|..+..-+++ .+++. -.+ ..+...+.++..+|+.|
T Consensus 569 ~eLQs~Lc~~Lq~i~rk~~~~--~~~~~d~iM~lflri~~s----~~s~~---v~e-------~a~laV~tl~~~Lg~~F 632 (859)
T KOG1241|consen 569 NELQSLLCNTLQSIIRKVGSD--IREVSDQIMGLFLRIFES----KRSAV---VHE-------EAFLAVSTLAESLGKGF 632 (859)
T ss_pred HHHHHHHHHHHHHHHHHcccc--chhHHHHHHHHHHHHHcC----Ccccc---chH-------HHHHHHHHHHHHHhHhH
Confidence 344566778888887762 346777788777665543 11111 111 22344556677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHH
Q 036770 711 LSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESE 788 (1061)
Q Consensus 711 ~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~ 788 (1061)
..+++.+.|-+..-.+++.+.-. +....| -.-+..|.++..|+++...+++.. .+.+. +....| .|.
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qV-c~~aVg------lVgdl~raL~~~i~py~d~~mt~L--vq~Ls--s~~~hR~vKP~ 701 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQV-CAAAVG------LVGDLARALEDDILPYCDELMTVL--VQCLS--SPNLHRNVKPA 701 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHH-HHHHHH------HHHHHHHHHHhhhhhHHHHHHHHH--HHHcc--Cccccccccch
Confidence 99999988888766655543211 111111 112445666666776655555432 01111 222234 578
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAIF 816 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l~ 816 (1061)
+|++++.|...+|.++.+++..++..+-
T Consensus 702 IlS~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 702 ILSVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999887775544
No 23
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.042 Score=63.55 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchH----HHHHH
Q 036770 564 KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQI----HTFYE 639 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~----~~l~e 639 (1061)
+.|+.++..|=+-+......|++++.-++..|++.|-+-|++ ++.+++..+-+...+-.+--| =++..
T Consensus 389 elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p--------~LpeLip~l~~~L~DKkplVRsITCWTLsR 460 (885)
T KOG2023|consen 389 ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVP--------HLPELIPFLLSLLDDKKPLVRSITCWTLSR 460 (885)
T ss_pred HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhccc--------chHHHHHHHHHHhccCccceeeeeeeeHhh
Confidence 345555555555444556789999999999999999998886 566666655444322111111 11221
Q ss_pred HHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHH
Q 036770 640 SVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719 (1061)
Q Consensus 640 aig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~ 719 (1061)
= |.-+...+ +.+++..+|.++..++ +- .+..+.+..+..+ ..+-..-|....|+++.|..
T Consensus 461 y-s~wv~~~~----~~~~f~pvL~~ll~~l---lD---------~NK~VQEAAcsAf---AtleE~A~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 461 Y-SKWVVQDS----RDEYFKPVLEGLLRRL---LD---------SNKKVQEAACSAF---ATLEEEAGEELVPYLEYILD 520 (885)
T ss_pred h-hhhHhcCC----hHhhhHHHHHHHHHHH---hc---------ccHHHHHHHHHHH---HHHHHhccchhHHHHHHHHH
Confidence 1 22222333 3457777766655432 10 1222222223322 23333445567888888888
Q ss_pred HHHHHHHHHHHHHHHh-HhcCCCCccch--hh--hHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHH
Q 036770 720 DMLNVYKMYSELISSS-ISSGGPFASKT--SY--VKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFA 794 (1061)
Q Consensus 720 ~ll~~y~~~~~~i~~~-~~~~g~~~~~~--~~--~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~ 794 (1061)
.+...|+.|.+.-... ..+.|..|... .. -.++..+ +=+++++|-. . +..+-..--.|.|++
T Consensus 521 ~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL---mPPLi~KW~~--------l--sd~DKdLfPLLEClS 587 (885)
T KOG2023|consen 521 QLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL---MPPLIEKWEL--------L--SDSDKDLFPLLECLS 587 (885)
T ss_pred HHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh---ccHHHHHHHh--------c--CcccchHHHHHHHHH
Confidence 8777776664421111 12222211100 00 0111111 1123333321 1 222212245799999
Q ss_pred HHHHhhhccCCCChHHHHHHHH---HHhHHhhhh----ccCCChH--hHHHHHHHHHHHHhhch---hHhhcCChHHHHH
Q 036770 795 TIINKYKGAMIDDVPRIFEAIF---QCTLEMITK----NFEDYPE--HRLKFFSLLRAIATHCF---PALIRLSSQQLKL 862 (1061)
Q Consensus 795 ~li~~~~~~~~~~l~~i~~~l~---~~tl~~i~~----~~~~~Pd--~~~~~f~ll~~i~~~~~---~~l~~~~~~~~~~ 862 (1061)
.+...+|..+-|+.++++++.| +.|+..+.+ .--+.|| ....-..|++-+++... +.++. +++....
T Consensus 588 sia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva-~snl~~l 666 (885)
T KOG2023|consen 588 SIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVA-QSNLLDL 666 (885)
T ss_pred HHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhh-hccHHHH
Confidence 9999999999999998888666 333444321 1223444 44445667777766433 33332 2233333
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 863 VMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 863 ~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
+ ...+...-+++-.+|+..+.++.+.+
T Consensus 667 l----l~C~~D~~peVRQS~FALLGDltk~c 693 (885)
T KOG2023|consen 667 L----LQCLQDEVPEVRQSAFALLGDLTKAC 693 (885)
T ss_pred H----HHHhccCChHHHHHHHHHHHHHHHHH
Confidence 3 44556889999999999999987665
No 24
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.07 E-value=0.063 Score=64.52 Aligned_cols=293 Identities=14% Similarity=0.127 Sum_probs=153.0
Q ss_pred HHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhc
Q 036770 56 HILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEW 133 (1061)
Q Consensus 56 ~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~ 133 (1061)
.++. .+++-..||.|.+=|-+-+++.-..|+.+.-.-+-.-++..+... + + -|.|-...+++-++.+--
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-n-g-------EVQnlAVKClg~lvsKvk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-N-G-------EVQNLAVKCLGPLVSKVK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-C-c-------HHHHHHHHHHHHHHhhch
Confidence 4553 456788999999999999999877777665544444556655432 1 1 133445567776665542
Q ss_pred CCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHH
Q 036770 134 PARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTD 211 (1061)
Q Consensus 134 p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~ 211 (1061)
-.+-.+..+.++..+-++ ++.....-.-|+...-++.-++...++. .-++.+...+.+.+.... ...
T Consensus 80 e~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~-----------tV~~~~t~~l~~~i~~qe~~sa 148 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA-----------TVCKRITPKLKQAISKQEDVSA 148 (1233)
T ss_pred HHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc-----------HHHHHHHHHHHHHhhhcccchh
Confidence 234556666666653333 3333332222333333332211122222 133444444444444322 233
Q ss_pred HHHHHHHHHHhcccc----cCcchhcchhhHHHHHhhCCCc--cchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHH
Q 036770 212 LIRATLSTLHAFLSW----IPLGYIFESPLLETLLKFFPMP--SYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQL 285 (1061)
Q Consensus 212 l~~~~L~~l~~~l~w----i~~~~i~~~~ll~~l~~~L~~~--~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l 285 (1061)
+...+|+.++.+++- +|. +...++..+...|..+ .+|..|+-||..+++...+.-|.+ +++.+
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~--------li~~L 217 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVE--------LIEHL 217 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHH--------HHHHH
Confidence 566777777776652 221 3345555555445554 478999999999887433221222 33332
Q ss_pred HhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh---ccChhhHHHHHHH
Q 036770 286 QTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINIS---YVDETEVFKVCLD 362 (1061)
Q Consensus 286 ~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~---~~~d~ei~~~~l~ 362 (1061)
..=++... ...-++.+.+++.+++...-....+. ....+ ..+.+.+ +.+|+|.-+.|++
T Consensus 218 l~~L~~~~------------q~~~~rt~Iq~l~~i~r~ag~r~~~h--~~~iv----p~v~~y~~~~e~~dDELrE~~lQ 279 (1233)
T KOG1824|consen 218 LKGLSNRT------------QMSATRTYIQCLAAICRQAGHRFGSH--LDKIV----PLVADYCNKIEEDDDELREYCLQ 279 (1233)
T ss_pred HhccCCCC------------chHHHHHHHHHHHHHHHHhcchhhcc--cchhh----HHHHHHhcccccCcHHHHHHHHH
Confidence 22111111 11233444555555555432222211 11112 3333333 5567888888988
Q ss_pred HHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccc
Q 036770 363 YWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVL 435 (1061)
Q Consensus 363 fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~ 435 (1061)
-...|... .|. -..|+...+...+++++.|++...
T Consensus 280 ale~fl~r-------cp~-------------------------------ei~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 280 ALESFLRR-------CPK-------------------------------EILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHHh-------Chh-------------------------------hhcccchHHHHHHHHHhccCCCCC
Confidence 87777643 110 013456677788889999987544
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.38 Score=61.22 Aligned_cols=130 Identities=12% Similarity=0.145 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhc----cchHHH--HHhHH
Q 036770 491 EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVG----QYPRFL--RAHWK 564 (1061)
Q Consensus 491 ~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig----~y~~~l--~~~~~ 564 (1061)
..-.|+..|++|-|+.-+-..-+-+...+.++.+-..+++..++-. +.-...+....-+++ |.++-- ..-.+
T Consensus 1049 t~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK--EsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1049 TSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK--ESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred cchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence 3457999999999998887665555556777777777776555321 111111222222333 222221 12346
Q ss_pred HHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCC
Q 036770 565 FLKTVVNKLFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 565 ~L~~vl~~L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
++..++++|++ ++-..-+.|+..+..++.++++...+.+.+ |+..++..+-...+.++
T Consensus 1127 ~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP--------~~~~LIp~ll~~~s~lE 1185 (1702)
T KOG0915|consen 1127 ALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP--------HFPKLIPLLLNAYSELE 1185 (1702)
T ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc--------hhhHHHHHHHHHccccc
Confidence 89999999999 554556789999999999999998887764 77777766655544443
No 26
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.51 E-value=0.36 Score=56.73 Aligned_cols=302 Identities=14% Similarity=0.208 Sum_probs=163.3
Q ss_pred hhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-HhHHHHHHHHHHHHHh
Q 036770 498 LNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AHWKFLKTVVNKLFEF 576 (1061)
Q Consensus 498 le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~~~~L~~vl~~L~~~ 576 (1061)
.|..--++|-++.++.- +++.+.|-.+|.++. .-+++ +++|- ++.+.+.++. ..-.+|++++.-+=.+
T Consensus 493 Rnttarafavvasalgi-------p~llpfLkavc~Skk--SwqaR-hTgIk-ivqqIail~Gcsvlphl~~lv~ii~~g 561 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGI-------PALLPFLKAVCGSKK--SWQAR-HTGIK-IVQQIAILSGCSVLPHLKPLVKIIEHG 561 (1172)
T ss_pred HHHHHHHHHHHHHHhCc-------HHHHHHHHHHhcccc--chhhh-chhhH-HHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 34445556666666542 345555555665542 12232 33343 5555555543 2345788877776668
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHH
Q 036770 577 MHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREE 656 (1061)
Q Consensus 577 ~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~ 656 (1061)
+.+.+..|+..++.++..+++.....=.. -+++++.-+..-...--.+.-..|..|+|++|--+..+ ...-
T Consensus 562 l~De~qkVR~itAlalsalaeaa~Pygie--------~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e-ya~y 632 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEAATPYGIE--------QFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE-YASY 632 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH-HHHH
Confidence 87778899999999999999866543222 24666665554333333445667899999999766533 2223
Q ss_pred HHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhC--hhhHHHHHHHHHHHHHHHHH-------
Q 036770 657 YLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALG--TFFLSQISVIFLDMLNVYKM------- 727 (1061)
Q Consensus 657 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~--~~f~~~~~~i~~~ll~~y~~------- 727 (1061)
|-..+|-.+...+ +. .|++-.+.+..+++ .+|..-| +.|.. ..+.|.++..|..
T Consensus 633 yTrevmlil~rEf--------~s----PDeemkkivLKVv~---qcc~t~Gv~~~y~r--~dilp~ff~~fw~rrmA~dr 695 (1172)
T KOG0213|consen 633 YTREVMLILIREF--------GS----PDEEMKKIVLKVVK---QCCATDGVEPAYIR--FDILPEFFFSFWGRRMALDR 695 (1172)
T ss_pred hHHHHHHHHHHhh--------CC----ChHHHHHHHHHHHH---HHhcccCCCHHHHh--hhhhHHHHhhhhhhhhhccc
Confidence 4444444333322 22 36666665555443 3444333 23321 2333333322221
Q ss_pred --HHHHHH---HhHhcCCCCccchhhhHHHH-------HHHHHHHHHHHHHHhhCCC------hhh-h-----hhcCCCC
Q 036770 728 --YSELIS---SSISSGGPFASKTSYVKLLR-------SVKRETLKLIETFLDKAED------QPQ-I-----GKQNVPD 783 (1061)
Q Consensus 728 --~~~~i~---~~~~~~g~~~~~~~~~~~~~-------~~~~~il~ll~~~i~~~~~------~~~-l-----~~~~~~~ 783 (1061)
|.+++. ....+.|..- -..|.+- ..++-....++..+..... ++. + +.....+
T Consensus 696 r~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqt 772 (1172)
T KOG0213|consen 696 RNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQT 772 (1172)
T ss_pred cchhhHHHHHHHHHHHhCchH---HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcc
Confidence 111111 1123344310 0011111 2233344455555544421 111 1 1012233
Q ss_pred cchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHh
Q 036770 784 ARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIAT 846 (1061)
Q Consensus 784 ~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~ 846 (1061)
..++..|..++.++..+|..+++++++|..-+.-. ++ ...|++|+.--++++++..
T Consensus 773 t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~r----Ln---nksa~vRqqaadlis~la~ 828 (1172)
T KOG0213|consen 773 TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWR----LN---NKSAKVRQQAADLISSLAK 828 (1172)
T ss_pred cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHH----hc---CCChhHHHHHHHHHHHHHH
Confidence 34567899999999999999999999988766533 22 3568999999999988765
No 27
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.50 E-value=0.04 Score=62.46 Aligned_cols=171 Identities=13% Similarity=0.203 Sum_probs=92.7
Q ss_pred HHhhHHHHH-HHHHhhCCCccc-cccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhc---
Q 036770 414 AVPLSKLRM-LMICRMAKPEEV-LIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQL--- 488 (1061)
Q Consensus 414 ~~~l~~L~~-~li~km~~p~e~-~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~--- 488 (1061)
++.+.+++. +++..|..-++. ..|++|-.|-+|......|.-...+...+.+..++.-..+.+..++...+++.+
T Consensus 182 ~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y 261 (370)
T PF08506_consen 182 KPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQY 261 (370)
T ss_dssp HHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 455666655 556677665443 337777677666654333222223344455555554334445445544444433
Q ss_pred -cCCccccchhhHHHHHHHhhhCCCCh------h-----HHhHHHHH-HHHHHHHhhhhhcCCcchHHHHHhHHHHhccc
Q 036770 489 -SGEDWTWNNLNTLCWAIGSISGSMME------E-----QENRFLVM-VIRDLLNLCEMTKGKDNKAVIASNIMYVVGQY 555 (1061)
Q Consensus 489 -~~~~~~w~~le~~~~algsis~~~~~------~-----~e~~~l~~-vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y 555 (1061)
.++..+|+.-+++++.+|+++..... . .-.+|+.+ |++.|- +.. ...+.++..++..+..+
T Consensus 262 ~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~--~~~----~~~piLka~aik~~~~F 335 (370)
T PF08506_consen 262 ASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ--PDV----NSHPILKADAIKFLYTF 335 (370)
T ss_dssp HH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH---SS-----S-HHHHHHHHHHHHHH
T ss_pred hhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc--ccC----CCCcchHHHHHHHHHHH
Confidence 24567999999999999999953311 0 01344433 344443 221 13344444455444444
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTF 592 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f 592 (1061)
..-+ .++.+..+++.+..+++.++..|..-|+.++
T Consensus 336 r~~l--~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 336 RNQL--PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp GGGS---HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HhhC--CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3333 2568888999999999888888999888764
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.41 E-value=0.58 Score=56.68 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcC-cccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Q 036770 27 GTGSKEERTAADQILRDLQNN-PDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 27 ~~~~~~~r~~A~~~L~~fq~s-~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~ 102 (1061)
.+.+...|+-+.=++..+... ++....+..-+. .++|+.+|-.|+.+|-+.. +++-...+-..+...+
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll- 123 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLL- 123 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHh-
Confidence 345888899999999998874 454555554443 3578999999999998854 3444444444444444
Q ss_pred HhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccch-hHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHH
Q 036770 103 QLSSNEASFREERLYVNKLNIILVQILKHEWPARWRS-FIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQ 180 (1061)
Q Consensus 103 ~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~-~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~ 180 (1061)
.++ ..+||+|.+.++..+++.. |+.-+. +++.+.+.+... +.....++.++..+ +.. ++..
T Consensus 124 ---~~~-----~~~VRk~A~~~l~~i~~~~-p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-----~~~-~~~~-- 186 (526)
T PF01602_consen 124 ---SDP-----SPYVRKKAALALLKIYRKD-PDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-----KCN-DDSY-- 186 (526)
T ss_dssp ---HSS-----SHHHHHHHHHHHHHHHHHC-HCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-----HCT-HHHH--
T ss_pred ---cCC-----chHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-----ccC-cchh--
Confidence 333 3589999999999999984 776555 688888887643 44555566666655 100 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC
Q 036770 181 KIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP 246 (1061)
Q Consensus 181 r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~ 246 (1061)
. .-.+.++..+.+++ ...++-+...+++++..+..+-+...- ...+++.+...+.
T Consensus 187 -----~----~~~~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~-~~~~i~~l~~~l~ 241 (526)
T PF01602_consen 187 -----K----SLIPKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDAD-KNRIIEPLLNLLQ 241 (526)
T ss_dssp -----T----THHHHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHH-HHHHHHHHHHHHH
T ss_pred -----h----hhHHHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhh-HHHHHHHHHHHhh
Confidence 0 12233333333333 234566677888888877754332210 0345555555544
No 29
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.28 E-value=0.8 Score=55.59 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC--hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHH
Q 036770 114 ERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS--ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNS 191 (1061)
Q Consensus 114 ~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~--~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~ 191 (1061)
...||+|.+.+++.++...--.-+...+.+++..++.. ......+...|..++--.+. .+..
T Consensus 187 R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~----------------r~~~ 250 (1233)
T KOG1824|consen 187 RLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH----------------RFGS 250 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc----------------hhhc
Confidence 36799999999999998874456777888888777654 23344456666666554321 1223
Q ss_pred HHHHHHHHHHHHHhh--cCcHHHHHHHHHHHHhcccccCcchh-cchhhHHHHHhhCC-Ccc
Q 036770 192 EFQLIHELCLYVLSA--SQRTDLIRATLSTLHAFLSWIPLGYI-FESPLLETLLKFFP-MPS 249 (1061)
Q Consensus 192 ~~~~I~~~~~~~L~~--~~~~~l~~~~L~~l~~~l~wi~~~~i-~~~~ll~~l~~~L~-~~~ 249 (1061)
+.+.+..++.+..+. ..+.++++.+|+.+.+|+...|.+.. .-+.+++++.+++. ||.
T Consensus 251 h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPN 312 (1233)
T KOG1824|consen 251 HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPN 312 (1233)
T ss_pred ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCC
Confidence 555566665555533 24678999999999999998886632 22577777776655 453
No 30
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.22 E-value=0.64 Score=53.25 Aligned_cols=281 Identities=12% Similarity=0.139 Sum_probs=127.9
Q ss_pred cchhhHHHHHHHhhhCCCChhHH-hHHHHHHHH-HHHHhhhhhcCCcchHHHHHhHHHHhccchHHH----HHhH----H
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQE-NRFLVMVIR-DLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL----RAHW----K 564 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e-~~~l~~vi~-~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l----~~~~----~ 564 (1061)
....++..||+|+|++.+..-.. ...++-+++ .+.++.++ +.+..+..|..-.+.+-+ +.-+ +
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-------p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~ 494 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-------PFRSINCSWRKENLVDHIAKAVREVESFLAK 494 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-------chHHhhhHHHHHhHHHhhhhhhccccchhHH
Confidence 34568889999999986532211 123333333 45555543 233444555433332222 1112 3
Q ss_pred HHHHHHHHHHHhhh--cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh----cCCcchH----
Q 036770 565 FLKTVVNKLFEFMH--ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA----DLEPHQI---- 634 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~--~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~----~l~~~~~---- 634 (1061)
|-+.+++.|+.+.. ......+..+..++-.+..-|.....+.- -.++.-+...+.+..+ .+..+++
T Consensus 495 fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~----a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~ 570 (858)
T COG5215 495 FYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDIL----AGFYDYTSKKLDECISVLGQILATEDQLLVE 570 (858)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44667777776331 12234566666677666666654332210 0133333344433221 1222222
Q ss_pred ---HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770 635 ---HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711 (1061)
Q Consensus 635 ---~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~ 711 (1061)
..+..-+..+|..-+.+- ...-++||..+...++. . .+... --.++-.++.+..++++.|.
T Consensus 571 elqSN~~~vl~aiir~~~~~i--e~v~D~lm~Lf~r~les----~--~~t~~--------~~dV~~aIsal~~sl~e~Fe 634 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDI--EDVEDQLMELFIRILES----T--KPTTA--------FGDVYTAISALSTSLEERFE 634 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHhc----c--CCchh--------hhHHHHHHHHHHHHHHHHHH
Confidence 222223333333333210 11222333333332221 1 11000 01223344556667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcc--hHH
Q 036770 712 SQISVIFLDMLNVYKMYSELISSS-ISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDAR--ESE 788 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~-~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r--~~~ 788 (1061)
.+.+.+.|-+....+.....+... +...| +.-+++...+.++-..+++.. .+.+. +....| .|.
T Consensus 635 ~y~~~fiPyl~~aln~~d~~v~~~avglvg---------dlantl~~df~~y~d~~ms~L--vQ~ls--s~~~~R~lKPa 701 (858)
T COG5215 635 QYASKFIPYLTRALNCTDRFVLNSAVGLVG---------DLANTLGTDFNIYADVLMSSL--VQCLS--SEATHRDLKPA 701 (858)
T ss_pred HHHhhhhHHHHHHhcchhHHHHHHHHHHHH---------HHHHHhhhhHHHHHHHHHHHH--HHHhc--ChhhccccchH
Confidence 888877777765543332222111 11111 111222222222222222211 01111 222334 488
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAI 815 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l 815 (1061)
+|++++.|...+|.++.++|..|+..+
T Consensus 702 iLSvFgDIAlaiga~F~~YL~~im~L~ 728 (858)
T COG5215 702 ILSVFGDIALAIGANFESYLDMIMMLF 728 (858)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999988777443
No 31
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=1.4 Score=52.06 Aligned_cols=144 Identities=15% Similarity=0.248 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 90 ~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
..-|-+-++.++.. +.+|+|.|...++=.++.+. |+.-...|+.+.+.+..+ +...-.+ ..++||
T Consensus 142 ARDLa~Dv~tLL~s---------skpYvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAA---V~VICE- 207 (877)
T KOG1059|consen 142 ARDLADDVFTLLNS---------SKPYVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAA---VSVICE- 207 (877)
T ss_pred hHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHH---HHHHHH-
Confidence 33455556665533 13689999888888888874 777777778888877654 3333222 345555
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCc
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMP 248 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~ 248 (1061)
+..-... +.-.+...++.+|..+.+.=+....++.+++.. |++--.-..+++.+..++++.
T Consensus 208 LArKnPk----------------nyL~LAP~ffkllttSsNNWmLIKiiKLF~aLt---plEPRLgKKLieplt~li~sT 268 (877)
T KOG1059|consen 208 LARKNPQ----------------NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALT---PLEPRLGKKLIEPITELMEST 268 (877)
T ss_pred HHhhCCc----------------ccccccHHHHHHHhccCCCeehHHHHHHHhhcc---ccCchhhhhhhhHHHHHHHhh
Confidence 2221110 111222334444444444446667777777766 333233346666666666554
Q ss_pred cchHHHHHHHHHHhcCcC
Q 036770 249 SYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 249 ~~~~~a~~cL~ei~~~~~ 266 (1061)
.--..--+|+..+++.++
T Consensus 269 ~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 269 VAMSLLYECVNTVVAVSM 286 (877)
T ss_pred HHHHHHHHHHHHheeehh
Confidence 444556788888887654
No 32
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.73 E-value=0.85 Score=52.99 Aligned_cols=304 Identities=14% Similarity=0.246 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-----cCCcchHHHHHH
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-----DLEPHQIHTFYE 639 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-----~l~~~~~~~l~e 639 (1061)
+++.++..||..+..+...=-+...++++|++..++....+ +...+++.+..+.. .-.+.=.+++||
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p--------~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILP--------IAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGG--------GHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 56777888887553211111356678889998887776654 77777777776542 123445789999
Q ss_pred HHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHH
Q 036770 640 SVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFL 719 (1061)
Q Consensus 640 aig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~ 719 (1061)
++|.+|....... ...+..+-+.+...++.++++.-++. -|-+-+.+..+++... ...++..| ..++|
T Consensus 95 si~~lir~~~~~~--~~~v~~~E~~L~P~f~~ILq~dV~EF----~PYvfQIla~Lle~~~--~~~~p~~y----~~L~~ 162 (435)
T PF03378_consen 95 SIGALIRFVCEAD--PEAVSQFEEALFPPFQEILQQDVQEF----IPYVFQILAQLLELRP--SSPLPDAY----KQLFP 162 (435)
T ss_dssp HHHHHHHHS-GGG--HH---HHHHHHHHHHHHHHHTT-TTT----HHHHHHHHHHHHHHSS----S--TTT----GGGHH
T ss_pred HHHHHHHhccCCC--hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCC--CCCCcHHH----HHHHH
Confidence 9999998766432 12222222222223334554311110 1222222233333221 11222222 22333
Q ss_pred HHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCC-------hhhhh---hc--CCCCcchH
Q 036770 720 DMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED-------QPQIG---KQ--NVPDARES 787 (1061)
Q Consensus 720 ~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~-------~~~l~---~~--~~~~~r~~ 787 (1061)
.++ ...+|..... + ..+.+++..|+.+.+. ++.+. +. +.. .-+.
T Consensus 163 ~Ll----------~p~lWe~~gn------i-------PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk-~~D~ 218 (435)
T PF03378_consen 163 PLL----------SPALWERRGN------I-------PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK-ANDH 218 (435)
T ss_dssp HHT----------SGGGGGSTTT------H-------HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T-TCHH
T ss_pred HHc----------CcchhccCCC------c-------CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC-Ccch
Confidence 332 1223321110 1 1222344444443311 11110 00 111 1345
Q ss_pred HHHHHHHHHHHhhhc-cCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhh-chhHhhc----CChHHHH
Q 036770 788 EVLSLFATIINKYKG-AMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATH-CFPALIR----LSSQQLK 861 (1061)
Q Consensus 788 ~~L~l~~~li~~~~~-~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~-~~~~l~~----~~~~~~~ 861 (1061)
.-.+++..++..+.. .+.++++.|+..++...-. ..-+..++.|..|+..++-+ .+..+.. +.+..|.
T Consensus 219 ~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~------skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~ 292 (435)
T PF03378_consen 219 YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS------SKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFG 292 (435)
T ss_dssp HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH------C--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh------CCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHH
Confidence 677899999988877 4688999999988877432 24467888888888776553 4444432 3456777
Q ss_pred HHHHHHH-HHhcC-CChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 036770 862 LVMDSII-WAFRH-TERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDT 921 (1061)
Q Consensus 862 ~~~~~i~-~~~~~-~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~ 921 (1061)
.++..+. -..+. ..+.--|.|.--+.+++.... ....+ |.+..-.++..+..++..+
T Consensus 293 ~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~--~~~~~-~~~~w~~ll~~Ll~ll~~p 351 (435)
T PF03378_consen 293 MILEKVWLPDLQKVSGPIERKICAVGLTKLLCESP--AFLSE-YSQLWPPLLEALLKLLERP 351 (435)
T ss_dssp HHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSST--THHHH--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccH--hhhhH-HHHHHHHHHHHHHHHHcCC
Confidence 7777643 22332 222223444444556654432 22222 3333444444444444433
No 33
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=3.2 Score=49.50 Aligned_cols=325 Identities=15% Similarity=0.220 Sum_probs=151.5
Q ss_pred HHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHh
Q 036770 542 AVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSG 621 (1061)
Q Consensus 542 ~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~ 621 (1061)
-.+.+ .+.++|+|-.|+.-+---=...++.|+++|.- +.++.+||.++..++.+= +-+ -+..++++.+-+.
T Consensus 208 gl~~~-cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~i--eelR~aac~cilaiVsKk---MkP---~dKL~lln~L~q~ 278 (980)
T KOG2021|consen 208 GLINS-CLDCIGSFVSWIDINLIANDYFLNLLYKFLNI--EELRIAACNCILAIVSKK---MKP---MDKLALLNMLNQT 278 (980)
T ss_pred hHHHH-HHHHHHHHhhhhhhhhhhchhHHHHHHHHHhH--HHHHHHHHHHHHHHHhcC---CCh---hHHHHHHHHHHHH
Confidence 34555 56799999999875322223446667777653 579999999999999753 222 1234565555333
Q ss_pred HHHhhhcC--CcchHHHHHHHHhhhhccCCCH--------------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCC
Q 036770 622 LATTVADL--EPHQIHTFYESVGHMIQAESDV--------------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKD 685 (1061)
Q Consensus 622 l~~~~~~l--~~~~~~~l~eaig~li~~~~~~--------------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d 685 (1061)
++. .+-. +...-..+.|.++.+|.+.+.+ ..++..+..++... --+-+.+. + .+
T Consensus 279 l~l-fg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~v-pyllq~l~----~----e~ 348 (980)
T KOG2021|consen 279 LEL-FGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIV-PYLLQFLN----N----EF 348 (980)
T ss_pred HHH-HhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHH-HHHHHHhc----c----cc
Confidence 322 1111 1112345666666666654432 11223333333311 11111111 1 12
Q ss_pred HHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHH
Q 036770 686 QDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIET 765 (1061)
Q Consensus 686 ~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~ 765 (1061)
.+....+...+.-..+.-|+++..-.++...+-..++.+++... -..........+.....-.+..+|+....+..+
T Consensus 349 ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqic---ydemy~nddn~tg~EeEa~f~e~RkkLk~fqdt 425 (980)
T KOG2021|consen 349 DDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQIC---YDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDT 425 (980)
T ss_pred hhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHh---ccHHhhcccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 22223344444444444455443223333333233333332110 000000000111111122223333333333333
Q ss_pred HHhhCCCh------hhhhh--cCCCCcc--hHH-HHHHHHHHHHhhhccC----CCChHHHHHHHHHHhHHhhhhcc--C
Q 036770 766 FLDKAEDQ------PQIGK--QNVPDAR--ESE-VLSLFATIINKYKGAM----IDDVPRIFEAIFQCTLEMITKNF--E 828 (1061)
Q Consensus 766 ~i~~~~~~------~~l~~--~~~~~~r--~~~-~L~l~~~li~~~~~~~----~~~l~~i~~~l~~~tl~~i~~~~--~ 828 (1061)
....-+.+ +.+.. .+.++.+ ..+ .++++=.+-...++.. ...+. --..+++-..-+++..+ .
T Consensus 426 i~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s-~~~vl~~~~~ll~tsqv~~h 504 (980)
T KOG2021|consen 426 IVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDIS-TSQVLFLNELLLMTSQVLAH 504 (980)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCcccc-HHHHHHHHHHHHHHcccccC
Confidence 32211110 00110 1334333 222 3555555544443321 11111 01133322222334333 4
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHH--HHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSII--WAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~--~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
+||-+..-|++++.+ ...|++.+++.+..+++..+ .|+.|..-.+...+--.+.++++...
T Consensus 505 ~h~lVqLlfmE~ivR-----Y~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk 567 (980)
T KOG2021|consen 505 DHELVQLLFMELIVR-----YNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK 567 (980)
T ss_pred CchHHHHHHHHHHHH-----HHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence 566677788887776 45677778888899999887 89999888888777666777777754
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=96.35 E-value=4.4 Score=50.39 Aligned_cols=132 Identities=14% Similarity=0.159 Sum_probs=84.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhc-Ccc-cHHHHHHHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHH
Q 036770 19 DATVAAFYGTGSKEERTAADQILRDLQN-NPD-MWLQVVHILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMK 94 (1061)
Q Consensus 19 ~~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~-aw~~~~~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr 94 (1061)
-.++. +..++|.+.|+-..-+|..+-+ .|+ +...+..+.. .++|+.+|-.|+.+|-..-. ..+-
T Consensus 71 ~dVvk-~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-----------~~i~ 138 (746)
T PTZ00429 71 VDVVK-LAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-----------SSVL 138 (746)
T ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-----------HHHH
Confidence 33444 3344578889999999988877 666 4444444443 35688999999988866221 2234
Q ss_pred HHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccC-ChhHHHHHHHHHHHHHHH
Q 036770 95 NYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKT-SETICENCMAILKLLSEE 168 (1061)
Q Consensus 95 ~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EE 168 (1061)
+.++..+.+...+. ..+||++.+.++..++... |+.-+ ++++.+..++.. ++...-+.+..|..+.++
T Consensus 139 e~l~~~lkk~L~D~-----~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EYTLEPLRRAVADP-----DPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 45555555544443 4789999999999998765 54322 455666665543 445666777777777654
No 35
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=5.7 Score=45.95 Aligned_cols=272 Identities=13% Similarity=0.209 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
|+..++.-++.+.+++...|+..||.++..||+-||..... |.++|...+..+..+-+. ....-.|-+-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--------~Fn~iFdvL~klsaDsd~-~V~~~aeLLdRL 151 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--------YFNEIFDVLCKLSADSDQ-NVRGGAELLDRL 151 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--------chHHHHHHHHHHhcCCcc-ccccHHHHHHHH
Confidence 66667777777777778889999999999999999987775 788888888776544322 223334444444
Q ss_pred hccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 036770 645 IQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNV 724 (1061)
Q Consensus 645 i~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~ 724 (1061)
+.....+....--+..++..+..++-. .++.+..-+..-+..+-+ .-+-.+..+++.+++.+++.
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~------------~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~ 216 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYV------------INPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNM 216 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhc------------CCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHH
Confidence 444333322122333444444333211 133333333333333221 11124555556666655433
Q ss_pred HHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhC---C------C-hhhhhhc---CCCCcchHHHHH
Q 036770 725 YKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA---E------D-QPQIGKQ---NVPDARESEVLS 791 (1061)
Q Consensus 725 y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~---~------~-~~~l~~~---~~~~~r~~~~L~ 791 (1061)
.. +. ...+|.+...+ +..|+..+ + + .+.+..+ +.|..+ -..|.
T Consensus 217 Ls--------------D~------s~eVr~~~~t~---l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq-~~al~ 272 (675)
T KOG0212|consen 217 LS--------------DS------SDEVRTLTDTL---LSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQ-LKALT 272 (675)
T ss_pred hc--------------CC------cHHHHHHHHHH---HHHHHHHHhcCccccCcccchhhccccccCCcHHHH-HHHHH
Confidence 21 10 11122222221 12222211 1 1 1111110 111111 12466
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC----hHHHHHHHHHH
Q 036770 792 LFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS----SQQLKLVMDSI 867 (1061)
Q Consensus 792 l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~----~~~~~~~~~~i 867 (1061)
-+..+|.-.|.+.-++++.|+..+..|. . +.++....+++.+. +.....++..+ .-.+..+++.+
T Consensus 273 Wi~efV~i~g~~~l~~~s~il~~iLpc~----s----~~e~~~i~~~a~~~---n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 273 WIQEFVKIPGRDLLLYLSGILTAILPCL----S----DTEEMSIKEYAQMV---NGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred HHHHHhcCCCcchhhhhhhhhhhcccCC----C----CCccccHHHHHHHH---HHHHHHHHhhhhhccccchHHHHHHH
Confidence 6666677777777777777777766552 2 22222122222221 11112222211 12466888888
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 868 IWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 868 ~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
..-+++.-.+.--.+++-+..+.++..+
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~ 369 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG 369 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc
Confidence 8888887777777777777776666543
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.65 E-value=4 Score=48.86 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=78.5
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIM 549 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~ 549 (1061)
++.+....+.+.|...+.. .+-.....+|+.+|.+++.-.... ..+ ..+++.++....+.. ..-+..++.++
T Consensus 70 ~~~~l~~~~~~~L~~gL~h--~~~~Vr~l~l~~l~~~~~~~~~~~--~~~~~~~l~~~i~~~L~~~d--~~Va~~A~~~L 143 (503)
T PF10508_consen 70 SPDSLLPQYQPFLQRGLTH--PSPKVRRLALKQLGRIARHSEGAA--QLLVDNELLPLIIQCLRDPD--LSVAKAAIKAL 143 (503)
T ss_pred CHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCHHHH--HHhcCccHHHHHHHHHcCCc--HHHHHHHHHHH
Confidence 3555444555555554432 344556678999999886532211 111 123333333222210 01122233333
Q ss_pred HHhccchHHHHHhHHHH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhc
Q 036770 550 YVVGQYPRFLRAHWKFL-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVAD 628 (1061)
Q Consensus 550 ~~ig~y~~~l~~~~~~L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~ 628 (1061)
.-++.++.-++. .+ +..+..|-..+..+++.++-++..++.++++.....+... ....+++.++..+. .
T Consensus 144 ~~l~~~~~~~~~---l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~---~~sgll~~ll~eL~----~ 213 (503)
T PF10508_consen 144 KKLASHPEGLEQ---LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV---VNSGLLDLLLKELD----S 213 (503)
T ss_pred HHHhCCchhHHH---HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH---HhccHHHHHHHHhc----C
Confidence 334444332211 11 1115555555656567899999999999987655443321 01124444444332 1
Q ss_pred CCcchHHHHHHHHhhhhc
Q 036770 629 LEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 629 l~~~~~~~l~eaig~li~ 646 (1061)
=+.--+....|.++.+..
T Consensus 214 dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 214 DDILVQLNALELLSELAE 231 (503)
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 122236778888888877
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.35 E-value=8.8 Score=45.97 Aligned_cols=310 Identities=15% Similarity=0.193 Sum_probs=155.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVN 571 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~ 571 (1061)
+-..++.+|-+++.+.+...+... .++..+.|.....+ +.+.|+...+..++++.+--..-.+.+ ..++.
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h-----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTH-----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 456788899999999888765532 45555554444443 223334434556666532111101111 33556
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCH
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~ 651 (1061)
.++..+.+++..|+..|+.++.++++. ...+....++ .++..+......-+...|.++||.+..+.+..++.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~-------~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDS-------NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCc-------chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 666677778889999999999999963 1111110000 01344444333334456889999999986654432
Q ss_pred HHHHHHHHH--HhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChh--hHHHHHHHHHHHHHHHHH
Q 036770 652 QKREEYLQR--LMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTF--FLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 652 ~~~~~~l~~--Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~--f~~~~~~i~~~ll~~y~~ 727 (1061)
- .++.. +++.+...+ .+.+. .--.+.+.++..+|. ..+. |... ..+++.+.
T Consensus 195 ~---~~~~~sgll~~ll~eL--------------~~dDi-Lvqlnalell~~La~-~~~g~~yL~~-~gi~~~L~----- 249 (503)
T PF10508_consen 195 A---EAVVNSGLLDLLLKEL--------------DSDDI-LVQLNALELLSELAE-TPHGLQYLEQ-QGIFDKLS----- 249 (503)
T ss_pred H---HHHHhccHHHHHHHHh--------------cCccH-HHHHHHHHHHHHHHc-ChhHHHHHHh-CCHHHHHH-----
Confidence 1 12221 333222221 12111 122455566666665 2221 1111 01111111
Q ss_pred HHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCC
Q 036770 728 YSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKA-EDQPQIGKQNVPDARESEVLSLFATIINKYKGAMID 806 (1061)
Q Consensus 728 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~-~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~ 806 (1061)
..+... .++ .......|..+.+++.+...-...+..
T Consensus 250 -------------------------------------~~l~~~~~dp------~~~~~~l~g~~~f~g~la~~~~~~v~~ 286 (503)
T PF10508_consen 250 -------------------------------------NLLQDSEEDP------RLSSLLLPGRMKFFGNLARVSPQEVLE 286 (503)
T ss_pred -------------------------------------HHHhccccCC------cccchhhhhHHHHHHHHHhcChHHHHH
Confidence 111111 000 000111233444444443321111112
Q ss_pred ChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhc--hhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 036770 807 DVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHC--FPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLN 884 (1061)
Q Consensus 807 ~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~--~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~ 884 (1061)
..|.++..+| .++.. ..|+.+..-|+-++.+.... ...+..-.++.++.++..+....++...++...+++
T Consensus 287 ~~p~~~~~l~----~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 287 LYPAFLERLF----SMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred HHHHHHHHHH----HHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 2233443433 33332 45667777777777766532 222322234577888888888888888899999999
Q ss_pred HHHHHHHhcc
Q 036770 885 LLLEMLKNFQ 894 (1061)
Q Consensus 885 ~l~~l~~~~~ 894 (1061)
.+..++....
T Consensus 360 al~~il~~~~ 369 (503)
T PF10508_consen 360 ALASILTSGT 369 (503)
T ss_pred HHHHHHhcCC
Confidence 9999986654
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.79 E-value=0.15 Score=47.57 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHH-HHHHHHHHhhhhhcCCcchHHHHHhHHHHhc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLV-MVIRDLLNLCEMTKGKDNKAVIASNIMYVVG 553 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig 553 (1061)
+.++.+.+.+.. .+|...+.++|+++.++...++. ...++. .+++.++.+..+. + ..++...+++++
T Consensus 7 ~~i~~l~~~l~~------~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~~----~-~~v~~~a~~~L~ 74 (120)
T cd00020 7 GGLPALVSLLSS------SDENVQREAAWALSNLSAGNNDN-IQAVVEAGGLPALVQLLKSE----D-EEVVKAALWALR 74 (120)
T ss_pred CChHHHHHHHHc------CCHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCC----C-HHHHHHHHHHHH
Confidence 344455555542 35888999999999999874322 334443 5666666655431 2 233334566877
Q ss_pred cchHHHHHhHHH-H-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 554 QYPRFLRAHWKF-L-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 554 ~y~~~l~~~~~~-L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
+.++.-...... . ..++..+...+++.+..++..|+.+|..+|+
T Consensus 75 ~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 75 NLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 776554333332 2 2367777887777788999999999998873
No 39
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.73 E-value=0.12 Score=46.30 Aligned_cols=59 Identities=17% Similarity=0.410 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC
Q 036770 563 WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL 629 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l 629 (1061)
.++++.+++-++..+.+++++||..||.++..|++.++..+.+ ++++|+..+.....+.
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~--------~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP--------YFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHcCC
Confidence 4578888888888888889999999999999999999987765 6777777666554443
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=16 Score=43.22 Aligned_cols=263 Identities=13% Similarity=0.118 Sum_probs=118.2
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHH
Q 036770 558 FLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTF 637 (1061)
Q Consensus 558 ~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l 637 (1061)
++...-.-..+++..+++-+..+.+.+|.....++....-.....=. .++.. .+.+....-+...+...
T Consensus 86 ~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~--------~~~l~---~l~~ll~~~~~~~~~~a 154 (569)
T KOG1242|consen 86 HLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG--------EYVLE---LLLELLTSTKIAERAGA 154 (569)
T ss_pred hccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH--------HHHHH---HHHHHhccccHHHHhhh
Confidence 33333335567888888888888888888777766665543222111 12222 22222221223334444
Q ss_pred HHHHhhhhccCCCHHH-HHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 638 YESVGHMIQAESDVQK-REEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 638 ~eaig~li~~~~~~~~-~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
-.+++.++...+-... ....+..+ ...+ ++-....+.+ ..+-+....+..+|.+|.|++-.
T Consensus 155 a~~~ag~v~g~~i~~~~~~~~l~~l--------~~ai----~dk~~~~~re------~~~~a~~~~~~~Lg~~~EPyiv~ 216 (569)
T KOG1242|consen 155 AYGLAGLVNGLGIESLKEFGFLDNL--------SKAI----IDKKSALNRE------AALLAFEAAQGNLGPPFEPYIVP 216 (569)
T ss_pred hHHHHHHHcCcHHhhhhhhhHHHHH--------HHHh----cccchhhcHH------HHHHHHHHHHHhcCCCCCchHHh
Confidence 4455554444332211 12222222 1111 1110001111 11223344567888899999998
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcch-HHHHHHHHH
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARE-SEVLSLFAT 795 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~-~~~L~l~~~ 795 (1061)
++|.++.-+......+ +.+.....+.+ ++-+..|.-+.--+..+..-....+|. ...+.+++.
T Consensus 217 ~lp~il~~~~d~~~~V------------r~Aa~~a~kai----~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~ 280 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKV------------REAAVEAAKAI----MRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGA 280 (569)
T ss_pred hHHHHHHHhhccchhh------------hHHHHHHHHHH----HHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHH
Confidence 8888765432111111 11111111111 111111111000000010000012232 235666665
Q ss_pred HHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCC
Q 036770 796 IINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTE 875 (1061)
Q Consensus 796 li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 875 (1061)
+...-.......++.+...+. +.+. +.+|++|.++.+-+.++... . ....+..++..++-++.++.
T Consensus 281 m~~~ap~qLs~~lp~iiP~ls----evl~---DT~~evr~a~~~~l~~~~sv-----i--dN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 281 MADCAPKQLSLCLPDLIPVLS----EVLW---DTKPEVRKAGIETLLKFGSV-----I--DNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred HHHhchHHHHHHHhHhhHHHH----HHHc---cCCHHHHHHHHHHHHHHHHh-----h--ccHHHHHHHHHHHHHhcCcc
Confidence 554332222222333333332 2222 36899999999988887653 1 22246666777777777877
Q ss_pred hhHH
Q 036770 876 RNIA 879 (1061)
Q Consensus 876 ~~i~ 879 (1061)
..+-
T Consensus 347 ~~~~ 350 (569)
T KOG1242|consen 347 CYTP 350 (569)
T ss_pred cchH
Confidence 4443
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.79 E-value=0.1 Score=35.69 Aligned_cols=31 Identities=19% Similarity=0.528 Sum_probs=25.8
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
+++.+++.+.++++.||.+|+.++..|++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3567777888999999999999999999865
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=93.62 E-value=6 Score=46.09 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=78.9
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-HhHHHHHHHHHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AHWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~~~~L~~vl~~L~~~~ 577 (1061)
|..--+.|-+++++.-+ ++.+.|-.+|.++. .-+++ ++++- ++.+.+.++. ..-.+|.+++.-+-.++
T Consensus 299 nvt~ra~~vva~algv~-------~llpfl~a~c~Srk--Sw~aR-hTgir-i~qqI~~llG~s~l~hl~~l~~ci~~~l 367 (975)
T COG5181 299 NVTGRAVGVVADALGVE-------ELLPFLEALCGSRK--SWEAR-HTGIR-IAQQICELLGRSRLSHLGPLLKCISKLL 367 (975)
T ss_pred HHHHHHHHHHHHhhCcH-------HHHHHHHHHhcCcc--chhhh-chhhH-HHHHHHHHhCccHHhhhhhHHHHHHHHh
Confidence 44455666677666533 34454555665432 12222 23232 4444444442 23457777777666666
Q ss_pred hcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 578 HETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 578 ~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
.+.+..|+-+++.++..+++.....=.. -+++++.-+..-..+--.+.-..+..|.|.+|-.+..
T Consensus 368 ~D~~~~vRi~tA~alS~lae~~~Pygie--------~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~p 432 (975)
T COG5181 368 KDRSRFVRIDTANALSYLAELVGPYGIE--------QFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSP 432 (975)
T ss_pred hccceeeeehhHhHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCCh
Confidence 6777789999999999999865543222 2466665555433333455567789999999977653
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.69 E-value=0.27 Score=38.84 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=40.2
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
|...++++|++|.+++...+. ...+++.+++.|..+..+ +...|+.+.++.+|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d-----~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQD-----DDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTS-----SSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhc
Confidence 677789999999988775443 467899999988877754 223556667888875
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.88 E-value=36 Score=41.11 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=84.3
Q ss_pred HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHH
Q 036770 479 QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRF 558 (1061)
Q Consensus 479 ~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~ 558 (1061)
.+.+.+.+.+.++ +-.....++-+++.+. .++ ..+.+++.+.++..+. +..+....++ .+. +.
T Consensus 79 l~~n~l~kdl~~~--n~~~~~lAL~~l~~i~---~~~----~~~~l~~~v~~ll~~~----~~~VRk~A~~-~l~---~i 141 (526)
T PF01602_consen 79 LIINSLQKDLNSP--NPYIRGLALRTLSNIR---TPE----MAEPLIPDVIKLLSDP----SPYVRKKAAL-ALL---KI 141 (526)
T ss_dssp HHHHHHHHHHCSS--SHHHHHHHHHHHHHH----SHH----HHHHHHHHHHHHHHSS----SHHHHHHHHH-HHH---HH
T ss_pred HHHHHHHHhhcCC--CHHHHHHHHhhhhhhc---ccc----hhhHHHHHHHHHhcCC----chHHHHHHHH-HHH---HH
Confidence 4455555544322 2233344555666654 333 3344445555544442 2233333233 333 44
Q ss_pred HHHhHHHHHH-HHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHH
Q 036770 559 LRAHWKFLKT-VVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTF 637 (1061)
Q Consensus 559 l~~~~~~L~~-vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l 637 (1061)
++..|+.++. +++.+...+.+++++|...|+.++..+ +|...... +++..++..+.++....++-.+..+
T Consensus 142 ~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~-------~~~~~~~~~L~~~l~~~~~~~q~~i 212 (526)
T PF01602_consen 142 YRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYK-------SLIPKLIRILCQLLSDPDPWLQIKI 212 (526)
T ss_dssp HHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHT-------THHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhh-------hhHHHHHHHhhhcccccchHHHHHH
Confidence 4556776666 577777777888899999999999998 43332211 2556666666665566677778888
Q ss_pred HHHHhhhhccCCC
Q 036770 638 YESVGHMIQAESD 650 (1061)
Q Consensus 638 ~eaig~li~~~~~ 650 (1061)
.+.++.+....+.
T Consensus 213 l~~l~~~~~~~~~ 225 (526)
T PF01602_consen 213 LRLLRRYAPMEPE 225 (526)
T ss_dssp HHHHTTSTSSSHH
T ss_pred HHHHHhcccCChh
Confidence 8888887655443
No 45
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=91.74 E-value=34 Score=40.55 Aligned_cols=103 Identities=14% Similarity=0.119 Sum_probs=63.5
Q ss_pred chHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChh-HHHHHHHHHHHHHHHhhhcccccccCCCchHHHHH
Q 036770 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPG-VQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSEL 618 (1061)
Q Consensus 540 ~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~-v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~i 618 (1061)
.+.-.+..+.++++.|..-.-.-+.++..+ ..+..+.++. .++.+.-+|...+..... ..+||+-.+
T Consensus 150 ~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l----~~ai~dk~~~~~re~~~~a~~~~~~~Lg~--------~~EPyiv~~ 217 (569)
T KOG1242|consen 150 ERAGAAYGLAGLVNGLGIESLKEFGFLDNL----SKAIIDKKSALNREAALLAFEAAQGNLGP--------PFEPYIVPI 217 (569)
T ss_pred HHhhhhHHHHHHHcCcHHhhhhhhhHHHHH----HHHhcccchhhcHHHHHHHHHHHHHhcCC--------CCCchHHhh
Confidence 334445555667776655444444455443 3334333232 344677777777765442 224687777
Q ss_pred HHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHH
Q 036770 619 LSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKR 654 (1061)
Q Consensus 619 l~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~ 654 (1061)
+..+-...++....-|....+|+-.+.++++....+
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 777666666777788889999999999998875444
No 46
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.59 E-value=4.2 Score=45.38 Aligned_cols=148 Identities=12% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhcccccCcchhcc----hhhHHHHH-hhC-CCccchH-HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHH
Q 036770 212 LIRATLSTLHAFLSWIPLGYIFE----SPLLETLL-KFF-PMPSYRN-LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQ 284 (1061)
Q Consensus 212 l~~~~L~~l~~~l~wi~~~~i~~----~~ll~~l~-~~L-~~~~~~~-~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~ 284 (1061)
+.+..|+-+..|++..+-...+. +++++.++ .+- +.|+.|+ .++.|+..++.+ .++...+.+..+++.+++.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~k-l~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINK-LGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHH-HGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHH
Confidence 34456666666666555222222 34444433 332 3567774 477888888774 2111222334444444444
Q ss_pred HHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHH
Q 036770 285 LQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR-VLESTQENISALLMGLEYLINISYVDETEVFKVCLDY 363 (1061)
Q Consensus 285 l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~-ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~f 363 (1061)
...++..+ -++-+++..++-.++.++.+.+.. ++.=+++... ..++.++-...|++.+|++.+++.
T Consensus 122 Tl~MI~~d----------~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~---~~idsi~wg~kh~~~~I~~~~L~~ 188 (319)
T PF08767_consen 122 TLPMINKD----------FEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK---LVIDSIVWGFKHTNREISETGLNI 188 (319)
T ss_dssp HHHHHSST----------SSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH---HHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred HHHHHHhh----------hhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHH
Confidence 43444221 123467888889999998888644 3333332222 234666666788999999999999
Q ss_pred HHHHHHHHHH
Q 036770 364 WNSFVLELFD 373 (1061)
Q Consensus 364 W~~l~~~l~~ 373 (1061)
-..+.+...+
T Consensus 189 l~~ll~~~~~ 198 (319)
T PF08767_consen 189 LLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887754
No 47
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=40 Score=41.13 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcc
Q 036770 159 MAILKLLSEEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 159 L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
++.|+.+.. .+++..|...|--.+- .+-.+++.++.+.+++. .+--++..||.+++...+ .+..
T Consensus 73 ieclKLias-------~~f~dKRiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s---~Ema-- 140 (866)
T KOG1062|consen 73 IECLKLIAS-------DNFLDKRIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICS---PEMA-- 140 (866)
T ss_pred hHHHHHhcC-------CCchHHHHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCC---HHHh--
Confidence 555665532 3455566666655444 56678888888888873 333467788888877664 2211
Q ss_pred hhhHHHHHhhC--CCccchHHHHHHHHHHhcCcC
Q 036770 235 SPLLETLLKFF--PMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 235 ~~ll~~l~~~L--~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
+++.+-+-+++ .+|-+|.+|+-|...++.+.+
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P 174 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP 174 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc
Confidence 22333333333 577899999999999998754
No 48
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.81 E-value=13 Score=43.41 Aligned_cols=115 Identities=14% Similarity=0.223 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHhhh-ccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHH
Q 036770 786 ESEVLSLFATIINKYK-GAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVM 864 (1061)
Q Consensus 786 ~~~~L~l~~~li~~~~-~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~ 864 (1061)
.|.++.+++.+++... +.+.+....++..+..+.+ =+.+.-.-+.-+|+++++++.+..+.. .+++..++
T Consensus 134 ~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l-------We~~gniPalvrLL~a~i~k~~~~i~~--~~~l~~iL 204 (435)
T PF03378_consen 134 IPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL-------WERRGNIPALVRLLQAYIKKDPSFIVA--NNQLEPIL 204 (435)
T ss_dssp HHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG-------GGSTTTHHHHHHHHHHHHHHHGGG------S-CHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch-------hccCCCcCcHHHHHHHHHHhCchhhcc--hhhHHHHH
Confidence 4778899999988776 3333333444444433322 233444567788999999999988743 22334333
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Q 036770 865 DSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFA 916 (1061)
Q Consensus 865 ~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~ 916 (1061)
.-...-+.+...| ..|+..|..++..+. .+.++.|...++...|.
T Consensus 205 gvFQkLi~sk~~D--~~gF~LL~~iv~~~p-----~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 205 GVFQKLIASKAND--HYGFDLLESIVENLP-----PEALEPYLKQIFTLLLT 249 (435)
T ss_dssp HHHHHHHT-TTCH--HHHHHHHHHHHHHS------HHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHCCCCcc--hHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHH
Confidence 3222222222222 347777777776663 23344444444444444
No 49
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.25 E-value=0.59 Score=54.16 Aligned_cols=138 Identities=14% Similarity=0.275 Sum_probs=87.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH--HHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW--KFLKTV 569 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~--~~L~~v 569 (1061)
+-.-.|-+.||+|.|+|.-. ...+++ ..+++.|+++.... .+....-++.|+++..++--.-.| +-+..+
T Consensus 165 ~~~v~eQavWALgNIagds~--~~Rd~vl~~g~l~pLl~~l~~~----~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~i 238 (514)
T KOG0166|consen 165 SADVREQAVWALGNIAGDSP--DCRDYVLSCGALDPLLRLLNKS----DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPI 238 (514)
T ss_pred cHHHHHHHHHHHhccccCCh--HHHHHHHhhcchHHHHHHhccc----cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 44567889999999999743 234444 34567777766542 332233447899998877654333 467888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
++.|+..++...+.|...||+++..++..-- +.... .+ . +..+-.+...-+...+.-.+.++|.|+.
T Consensus 239 Lp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~---~g---v----v~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 239 LPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID---AG---V----VPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH---cc---c----hHHHHHHHcCCCcccccHHHhhccceee
Confidence 8888888888889999999999999985322 11111 01 1 1122222333344455667889999765
Q ss_pred c
Q 036770 647 A 647 (1061)
Q Consensus 647 ~ 647 (1061)
.
T Consensus 309 G 309 (514)
T KOG0166|consen 309 G 309 (514)
T ss_pred c
Confidence 4
No 50
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.95 E-value=9.4 Score=47.72 Aligned_cols=139 Identities=12% Similarity=0.165 Sum_probs=80.2
Q ss_pred hhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchH--------------------
Q 036770 498 LNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPR-------------------- 557 (1061)
Q Consensus 498 le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~-------------------- 557 (1061)
.+|+||.+=+++.+-.+..-+.++.++.+.|+.-.--.+.-.-+...++.+.+.|||.+.
T Consensus 445 RDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rs 524 (1133)
T KOG1943|consen 445 RDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRS 524 (1133)
T ss_pred HHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhh
Confidence 356555555555555554445677777776664221111111111112224457777333
Q ss_pred --------HHHHhHHHHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhc
Q 036770 558 --------FLRAHWKFLKTVVNKLFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVAD 628 (1061)
Q Consensus 558 --------~l~~~~~~L~~vl~~L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~ 628 (1061)
+++.++.|..++++-++. -+.+=.+.++..|++++.++...-.+.+... ++..++.... .
T Consensus 525 Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~-------~L~~lld~~l----s 593 (1133)
T KOG1943|consen 525 NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADY-------VLPPLLDSTL----S 593 (1133)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhccc-------chhhhhhhhc----C
Confidence 344456778888888887 2433357899999999999998887777752 4444444332 2
Q ss_pred CCcchHHHHHHHHhhhhcc
Q 036770 629 LEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 629 l~~~~~~~l~eaig~li~~ 647 (1061)
-+...+...+-|.|.++.+
T Consensus 594 ~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 594 KDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred CChHHhhhhHHHHHHHHHH
Confidence 2445566667677666654
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.47 E-value=11 Score=39.83 Aligned_cols=139 Identities=12% Similarity=0.230 Sum_probs=75.5
Q ss_pred ccccchhhHHHHHHHhhhC-CCChhHHhHH---HHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHH
Q 036770 492 DWTWNNLNTLCWAIGSISG-SMMEEQENRF---LVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFL 566 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~-~~~~~~e~~~---l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L 566 (1061)
+.+|.....++=-+.++.. ....+....+ +..++..+.....+ .+..+..+.+.+++....-+..+- .++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-----~Rs~v~~~A~~~l~~l~~~l~~~~~~~~ 92 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-----LRSKVSKTACQLLSDLARQLGSHFEPYA 92 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-----H---HHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-----hHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 4579887766665555543 3111111222 22222333332222 333334445668887777776653 367
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh--hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK--RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~--~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
..+++.|+.-+.++...++..|..++..+++.|. ..+ + ...+.....+-++..|....+.+..+
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----------~---~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----------L---LEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----------H---HHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----------H---HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8888888887777778899999999999999876 111 1 22222223444577788899999999
Q ss_pred hccCC
Q 036770 645 IQAES 649 (1061)
Q Consensus 645 i~~~~ 649 (1061)
+...+
T Consensus 159 l~~~~ 163 (228)
T PF12348_consen 159 LEKWG 163 (228)
T ss_dssp HTT--
T ss_pred HHHcc
Confidence 98888
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.74 E-value=3.9 Score=36.65 Aligned_cols=86 Identities=8% Similarity=0.144 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH-hHHHHHHHHHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA-HWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~-~~~~L~~vl~~L~~~~ 577 (1061)
...++++.+++-++... -..++..+++.++....+ ++.+.++. .++.+.+..+..+. ...++..++..|+...
T Consensus 4 ~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D---~d~rVRy~--AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 4 KGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDD---QDSRVRYY--ACEALYNISKVARGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCC---CcHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999998887655 578899999988876654 23444443 44566666666543 2346677777777777
Q ss_pred hcCChhHHHHHHH
Q 036770 578 HETHPGVQDMACD 590 (1061)
Q Consensus 578 ~~~~~~v~~~A~~ 590 (1061)
.++++.|+..|+-
T Consensus 78 ~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 78 ADPDENVRSAAEL 90 (97)
T ss_pred cCCchhHHHHHHH
Confidence 8888999877753
No 53
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=15 Score=43.05 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
+.+.-+++.|...+.. .+-..+.-+|||++.+++.-.+...--.-..+++.|..+..+.. .+.+ .. .+..+|.
T Consensus 233 ~~v~~iLp~L~~ll~~--~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~---~~v~-~P-aLRaiGN 305 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHS--TDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSS---PKVV-TP-ALRAIGN 305 (514)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCC---cccc-cH-HHhhccc
Confidence 4455566666655422 23455566899999999765543222222233444444444421 2222 22 2236665
Q ss_pred c---hHHHHHhHHHHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCC
Q 036770 555 Y---PRFLRAHWKFLKTVVNKLFEFMH-ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLE 630 (1061)
Q Consensus 555 y---~~~l~~~~~~L~~vl~~L~~~~~-~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~ 630 (1061)
. .+..... -.-...+..|...+. ++.+.++..||+++..|+.....+.-..-..+ .+..++..+ ..-+
T Consensus 306 IvtG~d~QTq~-vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~---l~p~Li~~l----~~~e 377 (514)
T KOG0166|consen 306 IVTGSDEQTQV-VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDAN---LIPVLINLL----QTAE 377 (514)
T ss_pred eeeccHHHHHH-HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcc---cHHHHHHHH----hccc
Confidence 2 1111110 000122333333333 34455899999999999987665443321112 223333333 3446
Q ss_pred cchHHHHHHHHhhhhccCCCHH
Q 036770 631 PHQIHTFYESVGHMIQAESDVQ 652 (1061)
Q Consensus 631 ~~~~~~l~eaig~li~~~~~~~ 652 (1061)
++.+....=||+.+.+.-..+.
T Consensus 378 f~~rKEAawaIsN~ts~g~~~q 399 (514)
T KOG0166|consen 378 FDIRKEAAWAISNLTSSGTPEQ 399 (514)
T ss_pred hHHHHHHHHHHHhhcccCCHHH
Confidence 7788888889998877765433
No 54
>PRK09687 putative lyase; Provisional
Probab=87.56 E-value=29 Score=37.93 Aligned_cols=217 Identities=12% Similarity=0.087 Sum_probs=113.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNY 96 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ 96 (1061)
..+.++..+.++ +...|..|...|.++. .+..+..+..++ .+.++.+|.+|+.+|-..-.. ... +..
T Consensus 24 ~~~~L~~~L~d~-d~~vR~~A~~aL~~~~-~~~~~~~l~~ll-~~~d~~vR~~A~~aLg~lg~~------~~~----~~~ 90 (280)
T PRK09687 24 NDDELFRLLDDH-NSLKRISSIRVLQLRG-GQDVFRLAIELC-SSKNPIERDIGADILSQLGMA------KRC----QDN 90 (280)
T ss_pred cHHHHHHHHhCC-CHHHHHHHHHHHHhcC-cchHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC------ccc----hHH
Confidence 345555556555 6668999999997664 678888888876 557899999999999873211 100 112
Q ss_pred HHHHHHHh-hcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-ChhHHHHHHHHHHHHHH-HHhc--
Q 036770 97 ISEVIVQL-SSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-SETICENCMAILKLLSE-EVFD-- 171 (1061)
Q Consensus 97 ll~~l~~~-~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-~~~~~~~~L~iL~~l~E-Ev~~-- 171 (1061)
.+..+... ..++ ...||...+.+|+.+.... +...+.++..+...... +..........|..+.. +..+
T Consensus 91 a~~~L~~l~~~D~-----d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L 164 (280)
T PRK09687 91 VFNILNNLALEDK-----SACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLL 164 (280)
T ss_pred HHHHHHHHHhcCC-----CHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHH
Confidence 23333322 1222 2456667777777764333 11235555555444332 22333333333322211 0000
Q ss_pred --cCcccchHHHHHHHHHHHHH---HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC
Q 036770 172 --FSRGEMTQQKIKELKQSLNS---EFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP 246 (1061)
Q Consensus 172 --~~~~~l~~~r~~~l~~~l~~---~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~ 246 (1061)
.-.+.-..-|.. --.++.. ..+.+...+...|.. .+..+...+...|+.+ -++..++.+++.|.
T Consensus 165 ~~~L~d~~~~VR~~-A~~aLg~~~~~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~---------~~~~av~~Li~~L~ 233 (280)
T PRK09687 165 INLLKDPNGDVRNW-AAFALNSNKYDNPDIREAFVAMLQD-KNEEIRIEAIIGLALR---------KDKRVLSVLIKELK 233 (280)
T ss_pred HHHhcCCCHHHHHH-HHHHHhcCCCCCHHHHHHHHHHhcC-CChHHHHHHHHHHHcc---------CChhHHHHHHHHHc
Confidence 000000111111 1111221 134455555555542 3556666666666542 22456777777777
Q ss_pred CccchHHHHHHHHHHhc
Q 036770 247 MPSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 247 ~~~~~~~a~~cL~ei~~ 263 (1061)
++.++..|++.|-++.+
T Consensus 234 ~~~~~~~a~~ALg~ig~ 250 (280)
T PRK09687 234 KGTVGDLIIEAAGELGD 250 (280)
T ss_pred CCchHHHHHHHHHhcCC
Confidence 77777777777766654
No 55
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.27 E-value=57 Score=38.05 Aligned_cols=189 Identities=16% Similarity=0.221 Sum_probs=96.6
Q ss_pred CChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhH
Q 036770 62 KNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFI 141 (1061)
Q Consensus 62 ~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i 141 (1061)
.++..|-.+++.+-..+++ |..=+ ....+-+.+.+.+ . ...+...+ ... ..-+.-+.-.++.|..|. =..++
T Consensus 202 ~~~~~~~~~~~~la~LvNK-~~~~~--~l~~~l~~~~~~~-~-~~~~~~~~-~~~-~~~~~Wi~KaLv~R~~~~-~~~~~ 273 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNK-WPDDD--DLDEFLDSLLQSI-S-SSEDSELR-PQA-LEILIWITKALVMRGHPL-ATELL 273 (415)
T ss_pred CChHHHHHHHHHHHHHHcC-CCChh--hHHHHHHHHHhhh-c-ccCCcchh-HHH-HHHHHHHHHHHHHcCCch-HHHHH
Confidence 3467788888888877776 54322 1222222222222 0 11111111 111 122222233344454443 24567
Q ss_pred HHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCcHHHHHHHHHHH
Q 036770 142 PDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLN-SEFQLIHELCLYVLSASQRTDLIRATLSTL 220 (1061)
Q Consensus 142 ~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~-~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l 220 (1061)
..+++.+.... .....-+-+..|..+.-++ ++......+|---+ +-+..++..+.+..+.+. .+.....|.++
T Consensus 274 ~~L~~lL~~~~-~g~~aA~~f~il~~d~~~~----l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~k~~yL~AL 347 (415)
T PF12460_consen 274 DKLLELLSSPE-LGQQAAKAFGILLSDSDDV----LNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEIKSNYLTAL 347 (415)
T ss_pred HHHHHHhCChh-hHHHHHHHHhhHhcCcHHh----cCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhhHHHHHHHH
Confidence 77777776532 2222233344443331111 11111111111111 234444444554444433 33667889999
Q ss_pred HhcccccCcchhcc--hhhHHHHHhhCC--CccchHHHHHHHHHHhcC
Q 036770 221 HAFLSWIPLGYIFE--SPLLETLLKFFP--MPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 221 ~~~l~wi~~~~i~~--~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~ 264 (1061)
.+.++++|...+.. +.+++++++.|+ +++++..++++|..++.-
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999776554 689999998765 566899999999999984
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=85.48 E-value=13 Score=39.26 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=81.0
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHH-HHHHHHhh
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTV-VNKLFEFM 577 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~v-l~~L~~~~ 577 (1061)
-.+|-+++.++..+... -+.++..+++.|+..+.. .+..++.....++..+.+... +.+.+ +..+..++
T Consensus 71 ~~A~~~l~~l~~~l~~~-~~~~~~~~l~~Ll~~~~~-----~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~ 140 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSH-FEPYADILLPPLLKKLGD-----SKKFIREAANNALDAIIESCS----YSPKILLEILSQGL 140 (228)
T ss_dssp HHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHh-HHHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHH
Confidence 34688888888766544 356677888888887764 334444434444444433322 22233 44455577
Q ss_pred hcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 578 HETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 578 ~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
.+.+|.++..++..+..+..... ..+.. ..++..++..+.....+-+++-|...-+++..+.+..|.
T Consensus 141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~------~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 141 KSKNPQVREECAEWLAIILEKWGSDSSVLQK------SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp T-S-HHHHHHHHHHHHHHHTT-----GGG--------HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hCCCHHHHHHHHHHHHHHHHHccchHhhhcc------cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 78889999999999999998877 33322 124567777777666777777777777777777666654
No 57
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=85.24 E-value=2.4 Score=33.26 Aligned_cols=47 Identities=13% Similarity=0.335 Sum_probs=34.4
Q ss_pred HhHHHHhccch----HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHH
Q 036770 546 SNIMYVVGQYP----RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKI 595 (1061)
Q Consensus 546 s~i~~~ig~y~----~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i 595 (1061)
.+.++.+|+.. +.++ .+++.++..|+..+.++++.|+..||.++.+|
T Consensus 5 ~~A~~aLg~l~~~~~~~~~---~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 5 RAAAWALGRLAEGCPELLQ---PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHCTTTTTHHHHH---HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHhcccHHHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 33555777532 3322 37888888899888888899999999998754
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.01 E-value=99 Score=36.66 Aligned_cols=306 Identities=16% Similarity=0.237 Sum_probs=144.8
Q ss_pred HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh--HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHH
Q 036770 517 ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH--WKFLKTVVNKLFEFMHETHPGVQDMACDTFLK 594 (1061)
Q Consensus 517 e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~--~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~ 594 (1061)
.+.+++.+++.++.+..++ .+.++++ ...++|....-+++. .+.|.-+=+-|.+.+.+..|.|-.....++..
T Consensus 598 ~kp~l~~ivStiL~~L~~k---~p~vR~~--aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~ 672 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSK---PPDVRIR--AADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICS 672 (975)
T ss_pred cCcchHHHHHHHHHHhcCC---CccHHHH--HHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHH
Confidence 4678899999888877653 2333333 345777777777753 23444444445567777788887777777777
Q ss_pred HHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhch--HHHHHHH
Q 036770 595 IVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLP--NQKWSEI 672 (1061)
Q Consensus 595 i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~--~~~~~~~ 672 (1061)
|...-+ |-..| |-+..|+..+..|..+-..+-+..-..-+|.|....|.-.-..+.+..-.+.+ ...|
T Consensus 673 I~sv~~--~~~mq-----pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--- 742 (975)
T COG5181 673 IYSVHR--FRSMQ-----PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--- 742 (975)
T ss_pred Hhhhhc--ccccC-----CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---
Confidence 765433 22222 23677777766554322222222233444555544443110111222111111 1112
Q ss_pred HHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHH
Q 036770 673 IAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLL 752 (1061)
Q Consensus 673 ~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~ 752 (1061)
+.+..+....-+.| +++..|+ ..+...+++-.+.-. |..
T Consensus 743 ------------nKeiRR~A~~tfG~---Is~aiGP------qdvL~~LlnnLkvqe--------------------Rq~ 781 (975)
T COG5181 743 ------------NKEIRRNATETFGC---ISRAIGP------QDVLDILLNNLKVQE--------------------RQQ 781 (975)
T ss_pred ------------hHHHHHhhhhhhhh---HHhhcCH------HHHHHHHHhcchHHH--------------------HHh
Confidence 22222233444444 3444553 223333333222111 111
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhhhc-CCCCcch-HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhcc-CC
Q 036770 753 RSVKRETLKLIETFLDKAEDQPQIGKQ-NVPDARE-SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNF-ED 829 (1061)
Q Consensus 753 ~~~~~~il~ll~~~i~~~~~~~~l~~~-~~~~~r~-~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~-~~ 829 (1061)
|..-.-.+.++..+-.-+..+..+..+ ..|++.. -.+|.-++-+....|..-..++-.| .+|+.+.+ +.
T Consensus 782 RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~i--------tPlleDAltDr 853 (975)
T COG5181 782 RVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSI--------TPLLEDALTDR 853 (975)
T ss_pred hhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------hHHHHhhhccc
Confidence 111111122222222222122222211 2333221 3477777777776666544443332 35555433 45
Q ss_pred ChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 036770 830 YPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEM 889 (1061)
Q Consensus 830 ~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l 889 (1061)
.|-||+.-.+++..+.-+|+..- ..+.+-.+++-+.-.+-.+.|.+...-.+.+..+
T Consensus 854 D~vhRqta~nvI~Hl~Lnc~gtg---~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 854 DPVHRQTAMNVIRHLVLNCPGTG---DEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred chHHHHHHHHHHHHHhcCCCCcc---cHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 78899999999999988887642 2233334444333333345555544433333333
No 59
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=82.15 E-value=29 Score=34.57 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=80.1
Q ss_pred cchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHH
Q 036770 137 WRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRA 215 (1061)
Q Consensus 137 Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~ 215 (1061)
++.+...+.+.++++ +..+..++.+++.++++-.- +.+.++...-+..+..+|++...+.+...
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---------------e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ 87 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---------------EILLSHGSQWLRALLSILEKPDPPSVLEA 87 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---------------HHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 344445555555553 45688899999999887310 23445677788888899998777888888
Q ss_pred HHHHHHhcccccCc-----chhcc---hhhHHHHHhhCCCccchHHHHHHHHHHhcCcC
Q 036770 216 TLSTLHAFLSWIPL-----GYIFE---SPLLETLLKFFPMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 216 ~L~~l~~~l~wi~~-----~~i~~---~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
+..++...+..+.- ..+.. +.+++.+++.++++...+.++++|..++...+
T Consensus 88 ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 88 AIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred HHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 88888887764321 12222 46666677777767778899999999998654
No 60
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=80.77 E-value=21 Score=36.13 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=14.7
Q ss_pred hhhcCChhHHHHHHHHHHHHHHH
Q 036770 576 FMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 576 ~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
.+.++++.|++.|...|..+..+
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 33556666777777777666665
No 61
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.72 E-value=1.7e+02 Score=37.01 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=20.3
Q ss_pred hhhHHHHHhhCCCccchHHHHHHHHHHhcCcC
Q 036770 235 SPLLETLLKFFPMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 235 ~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
.+++..+.+. ++-+|..-..|+..|++...
T Consensus 92 enIl~~iv~~--p~~iRvql~~~l~~Ii~~D~ 121 (1010)
T KOG1991|consen 92 ENILETIVQV--PELIRVQLTACLNTIIKADY 121 (1010)
T ss_pred HHHHHHHHhC--chHHHHHHHHHHHHHHhcCC
Confidence 3555555433 33478889999999998644
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.46 E-value=1.5e+02 Score=36.42 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
+..-.+...+++-++.+ +--..-.++-++|.|+. +|...+..|.|-+ ++.+. +..+..-.++ .
T Consensus 103 dvllLltNslknDL~s~--nq~vVglAL~alg~i~s---~EmardlapeVe~----Ll~~~----~~~irKKA~L----c 165 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSS--NQYVVGLALCALGNICS---PEMARDLAPEVER----LLQHR----DPYIRKKAAL----C 165 (866)
T ss_pred HHHHHHHHHHHhhccCC--CeeehHHHHHHhhccCC---HHHhHHhhHHHHH----HHhCC----CHHHHHHHHH----H
Confidence 33344566666544221 22223345556666654 3433445555444 33331 2222222233 2
Q ss_pred chHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 555 YPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 555 y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
-.|+++.-|+.....+++.-..+++.|+||--.+...+..+|+.
T Consensus 166 a~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 166 AVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred HHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhc
Confidence 35788888888888888888888888888877777777777765
No 63
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.79 E-value=1.5e+02 Score=35.98 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=41.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
.+.|-.+|+-|++.+.+|.+-+.++.|+|+++|...|.-++++-.+.+.+
T Consensus 169 ykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 169 YKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 35555678899999999999999999999999999998888876665554
No 64
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.87 E-value=1.3e+02 Score=34.67 Aligned_cols=150 Identities=10% Similarity=0.148 Sum_probs=89.6
Q ss_pred HhccchHHHHHhHHHHHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC
Q 036770 551 VVGQYPRFLRAHWKFLKTVVNKLFEFMHE-THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL 629 (1061)
Q Consensus 551 ~ig~y~~~l~~~~~~L~~vl~~L~~~~~~-~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l 629 (1061)
+-|.++=|= +++..+|..+++.+.+ .++..+..|...+.+.|+.-...|.. +.+..+...-+...+-
T Consensus 316 ~e~sfsvWe----q~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D--------stE~ai~K~Leaa~ds 383 (516)
T KOG2956|consen 316 CEGSFSVWE----QHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD--------STEIAICKVLEAAKDS 383 (516)
T ss_pred HccchhHHH----HHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc--------hHHHHHHHHHHHHhCC
Confidence 455666663 4666777778887765 45678889999999999877776665 4444444333333333
Q ss_pred CcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChh
Q 036770 630 EPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTF 709 (1061)
Q Consensus 630 ~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~ 709 (1061)
..+.....-|++..+++...+.. ....+.. ++.. .|.. +...++++...++.++...
T Consensus 384 ~~~v~~~Aeed~~~~las~~P~~-~I~~i~~-----------~Ilt--------~D~~---~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 384 QDEVMRVAEEDCLTTLASHLPLQ-CIVNISP-----------LILT--------ADEP---RAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred chhHHHHHHHHHHHHHHhhCchh-HHHHHhh-----------HHhc--------Ccch---HHHHHHHHHHHHHhhcCHH
Confidence 33333444455554444332211 1111111 1111 1222 4677888999999988853
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036770 710 -FLSQISVIFLDMLNVYKMYSELISSS 735 (1061)
Q Consensus 710 -f~~~~~~i~~~ll~~y~~~~~~i~~~ 735 (1061)
..+.+..+.|.+++.|...+..+..+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKt 467 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKT 467 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhh
Confidence 56677888899999998887766543
No 65
>PRK09687 putative lyase; Provisional
Probab=78.45 E-value=72 Score=34.90 Aligned_cols=140 Identities=12% Similarity=-0.016 Sum_probs=76.6
Q ss_pred HhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHh
Q 036770 468 LSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASN 547 (1061)
Q Consensus 468 l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~ 547 (1061)
|..+....+...+...+.. .+-.....+.|++|.+...-.. ...+++.|..+... ++-..|+..
T Consensus 47 L~~~~~~~~~~~l~~ll~~------~d~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~----D~d~~VR~~ 110 (280)
T PRK09687 47 LQLRGGQDVFRLAIELCSS------KNPIERDIGADILSQLGMAKRC------QDNVFNILNNLALE----DKSACVRAS 110 (280)
T ss_pred HHhcCcchHHHHHHHHHhC------CCHHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhc----CCCHHHHHH
Confidence 3444445555454443321 2345556779999998653211 22344444444221 233444544
Q ss_pred HHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh
Q 036770 548 IMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA 627 (1061)
Q Consensus 548 i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~ 627 (1061)
....+|.... .++...+.++..+...++++++.|+..|+.++.++.. ..-+..++..+.
T Consensus 111 A~~aLG~~~~---~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------------~~ai~~L~~~L~---- 169 (280)
T PRK09687 111 AINATGHRCK---KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------------EAAIPLLINLLK---- 169 (280)
T ss_pred HHHHHhcccc---cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------------HHHHHHHHHHhc----
Confidence 6668887532 2222345566666666677788999999999854321 012333444332
Q ss_pred cCCcchHHHHHHHHhhh
Q 036770 628 DLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 628 ~l~~~~~~~l~eaig~l 644 (1061)
+=+..-+....+|+|.+
T Consensus 170 d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 170 DPNGDVRNWAAFALNSN 186 (280)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 33445688888899987
No 66
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=76.15 E-value=9.8 Score=41.24 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=61.6
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHH--HHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH--hHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLV--MVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HWKFLKTV 569 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~~~L~~v 569 (1061)
+-...|-++||+|.|+|.-. ...+++- .++..++++..... .+-..++. .-|+++..+|==.- +|.-....
T Consensus 170 ~~~V~eQavWALGNiAGDS~--~~RD~vL~~galeplL~ll~ss~--~~ismlRn-~TWtLSNlcRGknP~P~w~~isqa 244 (526)
T COG5064 170 EDDVREQAVWALGNIAGDSE--GCRDYVLQCGALEPLLGLLLSSA--IHISMLRN-ATWTLSNLCRGKNPPPDWSNISQA 244 (526)
T ss_pred hHHHHHHHHHHhccccCCch--hHHHHHHhcCchHHHHHHHHhcc--chHHHHHH-hHHHHHHhhCCCCCCCchHHHHHH
Confidence 34567889999999999743 2344543 35677888776421 11223333 45777766543211 24455566
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
+.-|+..+....+.|-.-||+++..+...
T Consensus 245 lpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 245 LPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 66666655445678889999999998753
No 67
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.93 E-value=2.2e+02 Score=35.64 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchHHHHHHHHHHhc
Q 036770 192 EFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 192 ~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~~a~~cL~ei~~ 263 (1061)
.+++.++.+..+=-+..++.+...+...++++..|.--....=++-++.+++.|++++....+...|.++..
T Consensus 505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~ 576 (982)
T KOG2022|consen 505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCE 576 (982)
T ss_pred HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 355666655544323347889999999999999886544333357899999999988887777777766655
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=74.89 E-value=10 Score=34.88 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
.+++.+.+.+.++++.|+..|+.++..++...
T Consensus 49 ~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 49 GGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 66777777777778999999999999999765
No 69
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=74.37 E-value=2.2e+02 Score=34.88 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=84.7
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH--HHHHHHHHHHHHhhh
Q 036770 501 LCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW--KFLKTVVNKLFEFMH 578 (1061)
Q Consensus 501 ~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~--~~L~~vl~~L~~~~~ 578 (1061)
.+-++|.++.++..- -+.+++++++.++....++ ..+++.+ ...++|+....++..- +.+..+=.-|.+.+.
T Consensus 778 ml~gfg~V~~~lg~r-~kpylpqi~stiL~rLnnk---sa~vRqq--aadlis~la~Vlktc~ee~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 778 MLLGFGTVVNALGGR-VKPYLPQICSTILWRLNNK---SAKVRQQ--AADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG 851 (1172)
T ss_pred hhhhHHHHHHHHhhc-cccchHHHHHHHHHHhcCC---ChhHHHH--HHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC
Confidence 355677777665422 3688999999887766543 3455544 4568888888887642 233333334556788
Q ss_pred cCChhHHHHHHHHHHHHHHHhh-hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 579 ETHPGVQDMACDTFLKIVQKCK-RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 579 ~~~~~v~~~A~~~f~~i~~~c~-~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+..|.|--....++..|+..-. .++. |-+..|+..+..|..+-..+-+..-..-+|.|....|.
T Consensus 852 eeypEvLgsILgAikaI~nvigm~km~--------pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 852 EEYPEVLGSILGAIKAIVNVIGMTKMT--------PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhccccccC--------CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 8888888888888888887542 1222 23677777776664433333344556666776666554
No 70
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.40 E-value=4e+02 Score=37.53 Aligned_cols=222 Identities=14% Similarity=0.122 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCccc-----------HHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770 15 VALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDM-----------WLQVVHILQNSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 15 i~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~a-----------w~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
...+..+|+.+-++. +++.|++|-..|..|-+..+. .+....+|. +.+..+|--|+.+|.+.=.
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~--- 87 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCK--- 87 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhc---
Confidence 677888899988764 567888888888887775532 223334553 4568888888877776532
Q ss_pred CCCCHHHHHHH-HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhc-CCcc------chhHHHHHHHccCCh--
Q 036770 83 NALPVEQRDGM-KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEW-PARW------RSFIPDLVAAAKTSE-- 152 (1061)
Q Consensus 83 ~~l~~e~~~~l-r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~-p~~W------p~~i~~l~~~~~~~~-- 152 (1061)
.++.+..| +...+.-+......+. .-.+...+.+|-.+....- .+.| +..++-++..++.+.
T Consensus 88 ---~e~nk~~Iv~~GaIppLV~LL~sGs-----~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 88 ---EEDLRVKVLLGGCIPPLLSLLKSGS-----AEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred ---CHHHHHHHHHcCChHHHHHHHHCCC-----HHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 12222222 1222222222211111 2234445566666655421 1233 567788888877652
Q ss_pred -h-HHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhccccc--C
Q 036770 153 -T-ICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWI--P 228 (1061)
Q Consensus 153 -~-~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi--~ 228 (1061)
. ........|..|+.. . + .+.+.+.+. ..++ .+...|.+ .++.+...+..++.....-. +
T Consensus 160 d~~L~~~Av~AL~nLs~~----~-e----n~~~~IIea--GaVp----~LV~LLsS-~d~~lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGS----T-D----GFWSATLEA--GGVD----ILVKLLSS-GNSDAQANAASLLARLMMAFESS 223 (2102)
T ss_pred hHHHHHHHHHHHHHHhcC----c-c----chHHHHHHc--CCHH----HHHHHHcC-CCHHHHHHHHHHHHHHHcCChHH
Confidence 1 223334556655532 1 1 111121111 1233 44444443 55666666666665544321 2
Q ss_pred cchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcC
Q 036770 229 LGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 229 ~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~ 264 (1061)
...+.+...++.+.++|.+ +..|+.|+-+|..|.+.
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~ 262 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ 262 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC
Confidence 3456677888999988852 46899999999999984
No 71
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.17 E-value=42 Score=33.94 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH----hhC--CCccchHHHHHHHHH
Q 036770 187 QSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL----KFF--PMPSYRNLTLQCLTE 260 (1061)
Q Consensus 187 ~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~----~~L--~~~~~~~~a~~cL~e 260 (1061)
..+....-.+...+..+|+...+..+....|+|+...++-.|.+-+ ..+++..+. .++ .|++.+..++-|+..
T Consensus 93 ~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL-~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~ 171 (182)
T PF13251_consen 93 STLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL-PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGA 171 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc-CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444556667777788888777788889999999999998887643 344444444 233 367889999999988
Q ss_pred HhcCc
Q 036770 261 VGALN 265 (1061)
Q Consensus 261 i~~~~ 265 (1061)
+++..
T Consensus 172 l~s~~ 176 (182)
T PF13251_consen 172 LLSVQ 176 (182)
T ss_pred HHcCC
Confidence 88753
No 72
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.66 E-value=1.6e+02 Score=34.81 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=38.3
Q ss_pred ccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Q 036770 49 DMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 49 ~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~ 103 (1061)
+-|..+..++..+...++|.-|+..|...|+...... ...|...+..+..
T Consensus 28 ~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~-----~~~R~~fF~~I~~ 77 (464)
T PF11864_consen 28 EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSS-----GLMRAEFFRDISD 77 (464)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccccc-----HHHHHHHHHHHhc
Confidence 5799999999887788999999999999999765432 2445556665544
No 73
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=70.15 E-value=36 Score=29.26 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 036770 544 IASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIV 596 (1061)
Q Consensus 544 v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~ 596 (1061)
++..+.+++|++.+- .+++.|.+.+.++++.|+..|+.++.++-
T Consensus 16 vr~~a~~~L~~~~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 16 VRAEAARALGELGDP---------EAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHHCCTHH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 344467799977532 44556666567889999999999999874
No 74
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=68.36 E-value=1.3e+02 Score=35.07 Aligned_cols=205 Identities=13% Similarity=0.174 Sum_probs=110.4
Q ss_pred HhcccCCCCHHHHHHHHHHHHHHHHHhhc-CchhhhhhHHHHHHHHHHHHHH-HHhhcC-CccchhHHHHHHHccCChhH
Q 036770 78 IKYRWNALPVEQRDGMKNYISEVIVQLSS-NEASFREERLYVNKLNIILVQI-LKHEWP-ARWRSFIPDLVAAAKTSETI 154 (1061)
Q Consensus 78 I~~~w~~l~~e~~~~lr~~ll~~l~~~~~-~~~~~~~~~~v~~kl~~~la~i-~~~~~p-~~Wp~~i~~l~~~~~~~~~~ 154 (1061)
+-.+++.||+ +..|| ..+++++.... ++..+. +..++.-+ ..+|.. ...-|| -+|...+.-+..+ +-++..
T Consensus 139 vP~d~sYLpE--~S~iR-aai~f~i~~GkkGpe~vp-p~lvkvvl-~~ia~vgeS~qyPPVNWaalLsPLMRl-nfGeEv 212 (589)
T PF11229_consen 139 VPTDFSYLPE--SSFIR-AAIDFLIEAGKKGPESVP-PSLVKVVL-KPIATVGESYQYPPVNWAALLSPLMRL-NFGEEV 212 (589)
T ss_pred CCCccccCcc--hhHHH-HHHHHHHHccccCCccCC-HHHHHHHH-HHhhhcCCCCCCCCccHHHHhhHHHhc-cccHHH
Confidence 3456777875 33444 45666665432 333222 33333322 222222 223354 5999999988876 335554
Q ss_pred HHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCcHHHHHHHHHHHHhcccccCcchhc
Q 036770 155 CENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLY-VLSASQRTDLIRATLSTLHAFLSWIPLGYIF 233 (1061)
Q Consensus 155 ~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~-~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~ 233 (1061)
+...+++-.. +... .++...++..|.. -+-..-+....+..+..+..|+.-++-+.+
T Consensus 213 q~lCLeiAvt-----------QaqS----------SqsAa~fLg~WlsPpli~sLs~~tk~~L~~Sl~~wmkhVsedqi- 270 (589)
T PF11229_consen 213 QQLCLEIAVT-----------QAQS----------SQSAAMFLGSWLSPPLIHSLSVNTKKYLFESLSLWMKHVSEDQI- 270 (589)
T ss_pred HHHHHHHHHH-----------hccc----------cccHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHhhCCHHHH-
Confidence 4444432211 0000 0234455555543 111122345567788888889988886654
Q ss_pred chhhHHH----HHhh---CCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcch
Q 036770 234 ESPLLET----LLKF---FPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEE 306 (1061)
Q Consensus 234 ~~~ll~~----l~~~---L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d 306 (1061)
..+++. .|+. +.+++++..++.-|...+.+..++ .....++....+.|-.++|.. ...+|
T Consensus 271 -Q~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~---~h~Ws~Lc~ttekIF~lLPn~---------i~~~e 337 (589)
T PF11229_consen 271 -QAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPA---QHCWSLLCETTEKIFDLLPNK---------IQRNE 337 (589)
T ss_pred -HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChh---hHHHHHHHHHHHHHHHhCccc---------ccHHH
Confidence 223332 2222 356788888888888876653222 234455555666666666642 22356
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036770 307 QAFIQNLALFFTSFFKF 323 (1061)
Q Consensus 307 ~~~~~~l~~l~~~~~~~ 323 (1061)
.+....+++++.++...
T Consensus 338 veLYi~vAkCLSEMtd~ 354 (589)
T PF11229_consen 338 VELYIGVAKCLSEMTDT 354 (589)
T ss_pred HHHHHHHHHHHhhcCHH
Confidence 66777788888776654
No 75
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=65.32 E-value=1.5e+02 Score=36.89 Aligned_cols=124 Identities=18% Similarity=0.237 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHhc-CcccHHHHH-HHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Q 036770 28 TGSKEERTAADQILRDLQN-NPDMWLQVV-HILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 28 ~~~~~~r~~A~~~L~~fq~-s~~aw~~~~-~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~ 103 (1061)
..|.+.|+-..-||..+-+ .|+-...|. .+.. .++|+.+|-+|++++-. +.. ..|-..++.-+.+
T Consensus 66 trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~--------l~~---~el~~~~~~~ik~ 134 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSL--------LRV---KELLGNIIDPIKK 134 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh--------cCh---HHHHHHHHHHHHH
Confidence 3478889999999999877 554333333 3332 35689999999998854 322 2344566666666
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchh-HHHH-HHHc-cCChhHHHHHHHHHHHHHHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSF-IPDL-VAAA-KTSETICENCMAILKLLSEE 168 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~-i~~l-~~~~-~~~~~~~~~~L~iL~~l~EE 168 (1061)
...++ ..+||++.+.+++.++..+ |+-.++. ..++ ...+ .+++..+.+++..|..+.+|
T Consensus 135 ~l~d~-----~ayVRk~Aalav~kly~ld-~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 135 LLTDP-----HAYVRKTAALAVAKLYRLD-KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HccCC-----cHHHHHHHHHHHHHHHhcC-HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 65554 3689999999999999776 4455554 3333 3444 34567788899999999888
No 76
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=64.79 E-value=90 Score=36.26 Aligned_cols=224 Identities=16% Similarity=0.169 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hcCcccHHH----HHHHHc----cCCChHHHHHHHHHHHHHHhccc
Q 036770 12 PMDVALLDATVAAFYGTGSKEERTAADQILRDL-QNNPDMWLQ----VVHILQ----NSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 12 ~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~f-q~s~~aw~~----~~~iL~----~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
-+|-.-+.+++..+.++ |+.+|.....+|..+ .+-++--.. ...+|. .+.....-.=.+.++...|+.-=
T Consensus 129 ~i~~~fi~~Ll~l~~S~-D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSP-DPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSS-THHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 36778888888777665 888999999998883 333332222 222232 12222222233445555555322
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhH-HHHHHHH
Q 036770 83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETI-CENCMAI 161 (1061)
Q Consensus 83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~-~~~~L~i 161 (1061)
..+.++.+..+++.++-+... +.. ...-..++.++..++.++ |.-=..++.-++..+..+... ....|..
T Consensus 208 ~plk~eh~~fl~~vllPLh~~----~~~----~~y~~~L~~~~~~f~~kd-p~l~~~~i~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKS----PHL----SSYHQQLSYCVVQFLEKD-PSLAEPVIKGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGS----TGG----GGTHHHHHHHHHHHHHH--GGGHHHHHHHHHHHS-SS-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcC----CcH----HHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHhCCCCCchhHHHHHHH
Confidence 256666666666655554322 110 122345666666666665 443344555555555443322 2333443
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHh--cccccCcchhcchhhHH
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHA--FLSWIPLGYIFESPLLE 239 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~--~l~wi~~~~i~~~~ll~ 239 (1061)
+..+.+- +.. ..+......++..+..++++ .+-.++..||..+.. +++++.- ....+++
T Consensus 279 l~~il~~--------~~~-------~~f~~i~~~lf~~la~ci~S-~h~qVAErAl~~w~n~~~~~li~~---~~~~i~p 339 (409)
T PF01603_consen 279 LEEILEV--------LPP-------EEFQKIMVPLFKRLAKCISS-PHFQVAERALYFWNNEYFLSLISQ---NSRVILP 339 (409)
T ss_dssp HHHHHTT----------H-------HHHHHHHHHHHHHHHHHHTS-SSHHHHHHHHGGGGSHHHHHHHHC---THHHHHH
T ss_pred HHHHHHh--------cCH-------HHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCHHHHHHHHh---ChHHHHH
Confidence 3333221 111 12334566677777777764 556777777776552 2333211 1134666
Q ss_pred HHHhhCC-------CccchHHHHHHHHHHhcC
Q 036770 240 TLLKFFP-------MPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 240 ~l~~~L~-------~~~~~~~a~~cL~ei~~~ 264 (1061)
.++..|. ++.++..|..++..+...
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6664321 457888888888887774
No 77
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=63.58 E-value=2.3e+02 Score=31.00 Aligned_cols=159 Identities=13% Similarity=0.280 Sum_probs=80.9
Q ss_pred HhHHHHhc-cc-hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcc---cccccCCCchHHHHHHH
Q 036770 546 SNIMYVVG-QY-PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKF---VIVQVGENEPFVSELLS 620 (1061)
Q Consensus 546 s~i~~~ig-~y-~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l---~~~~~~e~~p~l~~il~ 620 (1061)
..+.|++. +- ..++..||.++-+. ++..+-+..+.++..+|.++..+.+.|.... .. +.| ..+-+..
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~---iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~-~tG----l~~v~~~ 169 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPP---ILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILR-RTG----LFSVFED 169 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhh---HHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHH-HcC----hHHHHHH
Confidence 44677766 32 44777777655444 3333445578899999999999999887654 22 122 1122222
Q ss_pred hHHHhhhcCCc----ch----HHHHHHHHhhhhccCCC--HHHHHHHHHHHhhc-hHHHHHHHHHHHhccccccCCHHHH
Q 036770 621 GLATTVADLEP----HQ----IHTFYESVGHMIQAESD--VQKREEYLQRLMLL-PNQKWSEIIAQARQSVDFLKDQDVI 689 (1061)
Q Consensus 621 ~l~~~~~~l~~----~~----~~~l~eaig~li~~~~~--~~~~~~~l~~Ll~~-~~~~~~~~~~~~~~~~~~~~d~~~~ 689 (1061)
.+......+|+ ++ ....|.|+-.++..... ...+...+..++.- +.+.+.- . .+ ...+.
T Consensus 170 al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~----~-~~---~~~~~-- 239 (282)
T PF10521_consen 170 ALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEH----E-SS---FSYPR-- 239 (282)
T ss_pred HHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhcee----c-cc---cCchh--
Confidence 33323333332 22 23346777776655322 22233333333221 2222110 0 00 01122
Q ss_pred HHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHH
Q 036770 690 RTVLNILQTNTSVASALGTFFLSQISVIFLDMLN 723 (1061)
Q Consensus 690 ~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~ 723 (1061)
.....++.+..+.+.+|.....+++.++|.+.+
T Consensus 240 -l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~ 272 (282)
T PF10521_consen 240 -LRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQ 272 (282)
T ss_pred -HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 234455566666677777777777777776554
No 78
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=63.12 E-value=89 Score=28.56 Aligned_cols=91 Identities=8% Similarity=0.149 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhcCC--h--hHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhh
Q 036770 568 TVVNKLFEFMHETH--P--GVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~--~--~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.+++.+-+-+++.+ . .-+.+|..++..+.+-|++++.. +..+|...++...+ .++-+..-+++-..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~--------a~pQI~acL~saL~--~~eL~~~al~~W~~ 80 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISS--------ALPQIMACLQSALE--IPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhC--chhHHHHHHHHHHH
Confidence 45555555555543 2 23789999999999999988875 77888888876543 24457778888899
Q ss_pred hhccCCCHHHHHHHHHHHhhchHHHH
Q 036770 644 MIQAESDVQKREEYLQRLMLLPNQKW 669 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~~~~~~ 669 (1061)
++..+++++. ..+++.++..+...|
T Consensus 81 ~i~~L~~~~l-~~ll~~~~~~i~~~~ 105 (107)
T smart00802 81 LIKTLKEEEL-GPLLDQIFAAILPLW 105 (107)
T ss_pred HHHhCCHHHH-HHHHHHHHHHHHHhc
Confidence 9998886543 346666555554444
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=62.03 E-value=9 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.575 Sum_probs=21.1
Q ss_pred hHHHHHhhCCCc--cchHHHHHHHHHHhc
Q 036770 237 LLETLLKFFPMP--SYRNLTLQCLTEVGA 263 (1061)
Q Consensus 237 ll~~l~~~L~~~--~~~~~a~~cL~ei~~ 263 (1061)
+++.+++.+.|| ++|..|+.||.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 467777888754 689999999998875
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=61.91 E-value=3.3e+02 Score=32.30 Aligned_cols=211 Identities=14% Similarity=0.097 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQN-NPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQ 89 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~ 89 (1061)
+++...++++.+...+....|=.|-..|+++.. .|+-...|..-++ ++.|-.+-.||..+|-.. =.++.
T Consensus 300 ~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKT-------Gt~e~ 372 (898)
T COG5240 300 FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKT-------GTEET 372 (898)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHc-------Cchhh
Confidence 455566666667666555567777778877654 6766555543332 344556666776665331 23445
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHH
Q 036770 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEV 169 (1061)
Q Consensus 90 ~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv 169 (1061)
...+-+.+.+++...+.+-+.+. ..++- =..--||+.|...+.-+.+.+.. +.++++=+.+.+-+
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~---------ida~r-sLsl~Fp~k~~s~l~FL~~~L~~-----eGg~eFK~~~Vdai 437 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIA---------IDALR-SLSLLFPSKKLSYLDFLGSSLLQ-----EGGLEFKKYMVDAI 437 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEe---------HHHHH-HHHhhCcHHHHHHHHHHHHHHHh-----cccchHHHHHHHHH
Confidence 55555666666655544332110 11111 12234688888777776665532 11233333333332
Q ss_pred hccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHH-h-hCCC
Q 036770 170 FDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLL-K-FFPM 247 (1061)
Q Consensus 170 ~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~-~-~L~~ 247 (1061)
.|.- ...+.. -..+++.+...++.+.-+++....|..|+.=..-.+- -..++--++ . .|.+
T Consensus 438 sd~~-~~~p~s------------kEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN 500 (898)
T COG5240 438 SDAM-ENDPDS------------KERALEVLCTFIEDCEYHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILEN 500 (898)
T ss_pred HHHH-hhCchH------------HHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhh
Confidence 2210 001111 1233333444444444455555555555543321110 123344444 2 3677
Q ss_pred ccchHHHHHHHHHHhc
Q 036770 248 PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 248 ~~~~~~a~~cL~ei~~ 263 (1061)
.-+|.+|+.||...+-
T Consensus 501 ~ivRsaAv~aLskf~l 516 (898)
T COG5240 501 NIVRSAAVQALSKFAL 516 (898)
T ss_pred hHHHHHHHHHHHHhcc
Confidence 7889999999988765
No 81
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.99 E-value=6.4e+02 Score=35.25 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhccCCC-ChHHHHHHHHHHhHHhhhhc--c--------------CCC-------hHhHHHHHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMID-DVPRIFEAIFQCTLEMITKN--F--------------EDY-------PEHRLKFFSLLRAI 844 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~-~l~~i~~~l~~~tl~~i~~~--~--------------~~~-------Pd~~~~~f~ll~~i 844 (1061)
.|..+-.++..+|+.+.+ .-..++..|.-++++-+... . .++ -++..--++.+..+
T Consensus 1367 ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdL 1446 (1780)
T PLN03076 1367 ALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDL 1446 (1780)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 455555555778888865 33455555554555544311 0 011 13334444555555
Q ss_pred HhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 845 ATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 845 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
..++|..+ ...+..+++-+.|.+..++-.+++.|..+|..++...+.
T Consensus 1447 ft~fFd~L----~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1447 FVKFYPTV----NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 55555554 237788888888888899999999999999999987653
No 82
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=60.05 E-value=17 Score=26.36 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIV 596 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~ 596 (1061)
+++.|...++.+++.|+..|+.++..+|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677778788888999999999999987
No 83
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=59.86 E-value=2.5e+02 Score=30.19 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHH---------HHHHHHccCCChHHHHHHHHHHHHHHhcccC
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWL---------QVVHILQNSKNLNTKFFALQVLEGVIKYRWN 83 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~---------~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~ 83 (1061)
++-+.++.++..|-...||..+.+|.-.+......|.+.. ....+| +++++.+|--|+.+|.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nl------ 81 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNL------ 81 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhc------
Confidence 6788999999988878899899998888877665554433 333444 346889998898888863
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCc--hhhhhhHHHHHHHHHHHHHHHHh-hcCCccchhHHHHHHHccCCh-hHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNE--ASFREERLYVNKLNIILVQILKH-EWPARWRSFIPDLVAAAKTSE-TICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~--~~~~~~~~v~~kl~~~la~i~~~-~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L 159 (1061)
..+.+.+..++.++-..+....+.+ ..++ ..--.+|..+..- ++-..-.+.+++++..+.+|. ......|
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q------~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQ------LAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHH------HHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHH
Confidence 4566778888887666555433322 1111 1111333333221 111122345677777766553 3444566
Q ss_pred HHHHHHHH
Q 036770 160 AILKLLSE 167 (1061)
Q Consensus 160 ~iL~~l~E 167 (1061)
.+|..|++
T Consensus 156 k~L~nLS~ 163 (254)
T PF04826_consen 156 KVLVNLSE 163 (254)
T ss_pred HHHHHhcc
Confidence 66666655
No 84
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=59.10 E-value=27 Score=30.11 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLE 75 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~ 75 (1061)
++..|..|-..|.++. ++++-.....++ ++.++.+|..|+..|.
T Consensus 13 ~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 13 DPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALG 56 (88)
T ss_dssp SHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 4444555555554332 333444444444 3344555555554443
No 85
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=58.78 E-value=17 Score=39.39 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVN 571 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~ 571 (1061)
+-..+-.+|||++.+++.-.+....-.-..+.+.|+.+..+ +.+.+++-++..+|...-=-....+.+ -.+++
T Consensus 256 D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~-----~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 256 DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH-----ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC-----ccccccCHHHHhhcCeeecCccceehheecccHH
Confidence 34455668999999997654332111111223345555544 223334444555554311000000000 11233
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
++...+.++.++++.-||+++..|.-.
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAG 357 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAG 357 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccC
Confidence 333345556668999999999998754
No 86
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=58.61 E-value=1.1e+02 Score=27.95 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhh---cCcHHHHHHHHHHHHhcccccCcchh--cchhhHHHHHhhCCCccchHHHHHHHHHHhcC
Q 036770 192 EFQLIHELCLYVLSA---SQRTDLIRATLSTLHAFLSWIPLGYI--FESPLLETLLKFFPMPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 192 ~~~~I~~~~~~~L~~---~~~~~l~~~~L~~l~~~l~wi~~~~i--~~~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~ 264 (1061)
++-.|++.+...+.+ ..+..-...+++.++..+. +-.+++ +-+.++..+-..+..|+++..|++|-...+..
T Consensus 8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 334444444444443 1223344556666665555 222221 22566666667788889999999999888863
No 87
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=57.78 E-value=4.7e+02 Score=32.70 Aligned_cols=215 Identities=19% Similarity=0.279 Sum_probs=117.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDG 92 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~ 92 (1061)
-+++.++.-++.+|.. .+ ++.++...+-++-+.|+-... +.++ + -..+.|-..++.+|.. +. .
T Consensus 120 a~~~~~d~yiE~lYe~-~~-ek~~~~~~il~La~~~~NL~~---l~~n---e----~l~~aL~RvLred~~k-s~----~ 182 (708)
T PF05804_consen 120 ASINDLDEYIELLYED-IP-EKIRGTSLILQLARNPENLEE---LVQN---E----TLMSALARVLREDWKK-SV----E 182 (708)
T ss_pred CCHHHHHHHHHHHhcc-cH-HHHHHHHHHHHHhCCcchHHH---HHHh---H----HHHHHHHHHHHHHhhh-hH----H
Confidence 4799999999999976 34 566777888888888876432 2222 1 2345677777778875 22 2
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC--CccchhHHHHH---------------------HHcc
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP--ARWRSFIPDLV---------------------AAAK 149 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p--~~Wp~~i~~l~---------------------~~~~ 149 (1061)
+-..++.....+|+-.. + .+.....|++.+.-.++-++-- +.|..=+...- ...+
T Consensus 183 l~tnI~~iF~~fS~f~~-f-H~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~ 260 (708)
T PF05804_consen 183 LATNIIYIFFCFSNFSQ-F-HPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIR 260 (708)
T ss_pred HHHHHHHHHHHHHhHHH-H-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHH
Confidence 33334433333322111 1 2455677887777777655521 24532111110 0111
Q ss_pred CChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhccccc-C
Q 036770 150 TSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWI-P 228 (1061)
Q Consensus 150 ~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi-~ 228 (1061)
..+.....++.+|..++|+.-. . ..|. -..++..+..+|++ .+.++...++.+++..--.- .
T Consensus 261 kQeqLlrv~~~lLlNLAed~~v--------e------~kM~--~~~iV~~Lv~~Ldr-~n~ellil~v~fLkkLSi~~EN 323 (708)
T PF05804_consen 261 KQEQLLRVAFYLLLNLAEDPRV--------E------LKMV--NKGIVSLLVKCLDR-ENEELLILAVTFLKKLSIFKEN 323 (708)
T ss_pred HHHHHHHHHHHHHHHHhcChHH--------H------HHHH--hcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 1122344566777777776311 0 1111 13456666677764 35566666666666433211 1
Q ss_pred cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhc
Q 036770 229 LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 229 ~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~ 263 (1061)
-+.+.+..+++.+.+++. ++++...|+..|..+..
T Consensus 324 K~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf 360 (708)
T PF05804_consen 324 KDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF 360 (708)
T ss_pred HHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc
Confidence 223445667777777665 34567777777776654
No 88
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=57.11 E-value=5.7e+02 Score=33.48 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHHHhcCcccHHHHH-------HHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Q 036770 30 SKEERTAADQILRDLQNNPDMWLQVV-------HILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 30 ~~~~r~~A~~~L~~fq~s~~aw~~~~-------~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~ 102 (1061)
..+.|..|.+.|+.+..--+.=...+ .++ ..+...||--|+.||-..+..- ..+|+.+-.-.-++|+-.|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~V-r~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALV-RDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhc-cCCCcccchhhHhhhhhhhH
Confidence 34478899999999887443322333 333 3467899999999998887632 35788888888999999998
Q ss_pred HhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-------C----hhHHHHHHHHHHHHHHHHhc
Q 036770 103 QLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-------S----ETICENCMAILKLLSEEVFD 171 (1061)
Q Consensus 103 ~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-------~----~~~~~~~L~iL~~l~EEv~~ 171 (1061)
....+.. ...+|=..|..|+.+|+.-+ .|+..-.+.-.. + ....+..+.-|....|+++.
T Consensus 514 ~l~~d~~----~~~vRiayAsnla~LA~tA~-----rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~ 584 (1431)
T KOG1240|consen 514 HLLNDSS----AQIVRIAYASNLAQLAKTAY-----RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVS 584 (1431)
T ss_pred hhhccCc----cceehhhHHhhHHHHHHHHH-----HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHH
Confidence 8766532 35677778888888888763 222222111100 1 11122344445555555443
Q ss_pred -cCcccchHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhcCcHHHHHHHHHHHH---hcccccCcch
Q 036770 172 -FSRGEMTQQKIKELKQSLNSEFQLIHELC----------------LYVLSASQRTDLIRATLSTLH---AFLSWIPLGY 231 (1061)
Q Consensus 172 -~~~~~l~~~r~~~l~~~l~~~~~~I~~~~----------------~~~L~~~~~~~l~~~~L~~l~---~~l~wi~~~~ 231 (1061)
+-.+.-+ -+|.++-++ |..+| ...|+. .+..++.+-++.+. -|+.|-..+.
T Consensus 585 sLlsd~~~-----~Vkr~Lle~---i~~LC~FFGk~ksND~iLshLiTfLND-kDw~LR~aFfdsI~gvsi~VG~rs~se 655 (1431)
T KOG1240|consen 585 SLLSDSPP-----IVKRALLES---IIPLCVFFGKEKSNDVILSHLITFLND-KDWRLRGAFFDSIVGVSIFVGWRSVSE 655 (1431)
T ss_pred HHHcCCch-----HHHHHHHHH---HHHHHHHhhhcccccchHHHHHHHhcC-ccHHHHHHHHhhccceEEEEeeeeHHH
Confidence 1011112 222332222 33333 333332 25566766666666 5777765443
Q ss_pred hcchhhHHHHHhhCCCcc--chHHHHHHHHHHhcCc
Q 036770 232 IFESPLLETLLKFFPMPS--YRNLTLQCLTEVGALN 265 (1061)
Q Consensus 232 i~~~~ll~~l~~~L~~~~--~~~~a~~cL~ei~~~~ 265 (1061)
-+++++.+.|.|++ +-..|+.||.-++..+
T Consensus 656 ----yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 656 ----YLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred ----HHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 47888888888764 4577899988888764
No 89
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=56.21 E-value=1.2e+02 Score=27.77 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=22.5
Q ss_pred hhhHHHHHhhCCCccchHHHHHHHHHHhcC
Q 036770 235 SPLLETLLKFFPMPSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 235 ~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~ 264 (1061)
+.++..+-..|..|+++..|++|...++..
T Consensus 55 pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 55 PQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 345555556778888999999999888863
No 90
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=55.57 E-value=1e+02 Score=42.42 Aligned_cols=95 Identities=11% Similarity=0.194 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHH
Q 036770 788 EVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSI 867 (1061)
Q Consensus 788 ~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i 867 (1061)
-++.|+.+++...++.+...=..||..+-... . +.++++...-|+.+..|+..+++.+...++..|..+++|+
T Consensus 1202 ~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa-----~--d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL 1274 (1780)
T PLN03076 1202 LIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAA-----Y--DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCL 1274 (1780)
T ss_pred HHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH-----h--CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHH
Confidence 48999999999999888888787776544222 1 4679999999999999999888877655678899999998
Q ss_pred H-HHhcCCChhHHHHHHHHHHHH
Q 036770 868 I-WAFRHTERNIAETGLNLLLEM 889 (1061)
Q Consensus 868 ~-~~~~~~~~~i~~~~l~~l~~l 889 (1061)
. .+-...+.+++-.++.+|..+
T Consensus 1275 ~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1275 IAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred HHHHhCcCcccccHHHHHHHHHH
Confidence 6 554445688888888887755
No 91
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=54.52 E-value=31 Score=34.36 Aligned_cols=82 Identities=15% Similarity=0.244 Sum_probs=57.5
Q ss_pred CCChHHHHHHHHHHhHH---hhh----hcc----CCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcC
Q 036770 805 IDDVPRIFEAIFQCTLE---MIT----KNF----EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRH 873 (1061)
Q Consensus 805 ~~~l~~i~~~l~~~tl~---~i~----~~~----~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 873 (1061)
.+.++.++..++..|.- ++. +.| ++=-|+|+..|+++.+++..|+..+ .+..+++.+..|++.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL~D 77 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGLKD 77 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhcCC
Confidence 45667777777754432 111 111 2335799999999999999876543 366779999999988
Q ss_pred CChhHHHHHHHHHHHHHHhc
Q 036770 874 TERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 874 ~~~~i~~~~l~~l~~l~~~~ 893 (1061)
+.+|--.|...+.++....
T Consensus 78 -~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 78 -EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp --HHHHHHHHHHHHHHHHS-
T ss_pred -cHHHHHHHHHHHHHHHHhC
Confidence 9999999999999986543
No 92
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=53.75 E-value=1.6e+02 Score=26.82 Aligned_cols=77 Identities=8% Similarity=0.108 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHH
Q 036770 582 PGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRL 661 (1061)
Q Consensus 582 ~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~L 661 (1061)
..-+.+|..++..+.+-|++++.. +..+|...++..... ++-+...+++-..++..++.++. ..+++.+
T Consensus 29 ~~ek~~~l~si~~lI~~~~~~i~~--------~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l-~~ll~~~ 97 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGSHISS--------ARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL-GPLLDQI 97 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH-HHHHHHH
Confidence 345789999999999999988875 788888888765432 24466778888888888886544 3466665
Q ss_pred hhchHHHH
Q 036770 662 MLLPNQKW 669 (1061)
Q Consensus 662 l~~~~~~~ 669 (1061)
...+...|
T Consensus 98 ~~~l~~~~ 105 (107)
T PF08064_consen 98 FAILLPLW 105 (107)
T ss_pred HHHHHHhc
Confidence 55544444
No 93
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=51.80 E-value=1.3e+02 Score=30.49 Aligned_cols=97 Identities=15% Similarity=0.237 Sum_probs=59.8
Q ss_pred hHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHH
Q 036770 613 PFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTV 692 (1061)
Q Consensus 613 p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i 692 (1061)
+|+.-+++.+.... ..-+....+|+--++.. ...+.-...+.+|+.|+-..++. .|+++....
T Consensus 38 ~~Lpif~dGL~Et~----~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~t------------r~~~V~~~~ 100 (183)
T PF10274_consen 38 HYLPIFFDGLRETE----HPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNT------------RDPEVFCAT 100 (183)
T ss_pred hHHHHHHhhhhccC----ccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhC------------CCHHHHHHH
Confidence 45544455544332 22245556666667766 22333356777888877766542 477777777
Q ss_pred HHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 036770 693 LNILQTNTSVASALGTFFLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 693 ~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~ 727 (1061)
..+|+.+.......|++..|++..+.|. +++|++
T Consensus 101 L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~-ln~f~~ 134 (183)
T PF10274_consen 101 LKALQQLVTSSDMVGEALVPYYRQLLPV-LNLFKN 134 (183)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHh
Confidence 7777777666788888888887777664 344443
No 94
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=51.33 E-value=4.5e+02 Score=30.57 Aligned_cols=77 Identities=12% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHHHHhHHhhhhccCCC-hHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHh
Q 036770 814 AIFQCTLEMITKNFEDY-PEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 814 ~l~~~tl~~i~~~~~~~-Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~ 892 (1061)
++|..+++.+-+.+.+. .+.+.+|+.-+..++++.|..++.. .++.++=-++.|+..++.++-..+++++..++..
T Consensus 319 R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~---~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 319 RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP---ELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 45555555444444333 3489999999999999999877642 3455555556667889999999999999988755
Q ss_pred c
Q 036770 893 F 893 (1061)
Q Consensus 893 ~ 893 (1061)
-
T Consensus 396 ~ 396 (415)
T PF12460_consen 396 A 396 (415)
T ss_pred C
Confidence 4
No 95
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=47.64 E-value=1.4e+02 Score=32.30 Aligned_cols=72 Identities=21% Similarity=0.169 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchHHHHHHHHHHhcCcC
Q 036770 193 FQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 193 ~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~ 266 (1061)
...++.++...|++ ..+.+...+|+++...+..++.+.-..++++..+.+++..+ +...|++.|-++++...
T Consensus 186 ~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~-~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 186 EFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD-LWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc-cHHHHHHHHHHHHhhcc
Confidence 35677778888875 34578899999999999999888767789999999998654 77889999999888643
No 96
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.82 E-value=2.3e+02 Score=27.00 Aligned_cols=99 Identities=16% Similarity=0.166 Sum_probs=53.3
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH-H
Q 036770 20 ATVAAFYGTGS-KEERTAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM-K 94 (1061)
Q Consensus 20 ~av~~ly~~~~-~~~r~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l-r 94 (1061)
+.|+.+-++.. ...-...-++...+..++.+-..+...|. .++++++...|+.+|+..+++- ...-+..+ .
T Consensus 3 ~~i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNc----g~~f~~ev~s 78 (133)
T smart00288 3 RLIDKATSPSLLEEDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNC----GSKFHLEVAS 78 (133)
T ss_pred hHHHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHh
Confidence 34444444431 12344556666666666655555554443 3578999999999999999863 22222222 2
Q ss_pred HHHHHHHHHhhcCchhhhhhHHHHHHHHHHH
Q 036770 95 NYISEVIVQLSSNEASFREERLYVNKLNIIL 125 (1061)
Q Consensus 95 ~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~l 125 (1061)
..+++-+....++... ..-|++|+..++
T Consensus 79 ~~fl~~L~~l~~~~~~---~~~Vk~kil~li 106 (133)
T smart00288 79 KEFLNELVKLIKPKYP---LPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHHHcCCCC---cHHHHHHHHHHH
Confidence 2344444444333221 122777776665
No 97
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=45.79 E-value=1.3e+02 Score=30.48 Aligned_cols=88 Identities=13% Similarity=0.223 Sum_probs=54.1
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhhhcccccccCC--C---chHHHHH---HHhHHH-hhh----cCCcchHHHHHHHHhh
Q 036770 577 MHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGE--N---EPFVSEL---LSGLAT-TVA----DLEPHQIHTFYESVGH 643 (1061)
Q Consensus 577 ~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e--~---~p~l~~i---l~~l~~-~~~----~l~~~~~~~l~eaig~ 643 (1061)
+.+++++||..|+.++..+-+.++..|..-...+ . .||-..+ +..+.. +.. .-.......++++++.
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3578899999999999999988887666432111 1 1222222 111111 111 1123346678999999
Q ss_pred hhccCCCHHHHHHHHHHHhhc
Q 036770 644 MIQAESDVQKREEYLQRLMLL 664 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~ 664 (1061)
++++.|....+..++..++..
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~ 149 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQ 149 (182)
T ss_pred HHccCChhhcCHhHHHHHHHH
Confidence 999999876666666665543
No 98
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=44.74 E-value=4.7e+02 Score=30.35 Aligned_cols=186 Identities=17% Similarity=0.209 Sum_probs=92.3
Q ss_pred chhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHH
Q 036770 138 RSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRAT 216 (1061)
Q Consensus 138 p~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~ 216 (1061)
.+|+..++.++.+. +.-++....+|..+-.-.. .+|..++..+. ..+.+.+.......-+...
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~---------~~r~~Ir~~i~-------~~~~~fi~e~~~~~gI~el 195 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFP---------NLRSFIRKSIN-------NIFYRFIYETERHNGIAEL 195 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T---------TTHHHHHHHHH-------HHHHHHHHTTS--STHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh---------hhHHHHHHHHH-------HHHHHHhcCcccccCHHHH
Confidence 36888888888764 3445555666665533211 12333333222 2222333333333346778
Q ss_pred HHHHHhcccc--cCcchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCC
Q 036770 217 LSTLHAFLSW--IPLGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPP 291 (1061)
Q Consensus 217 L~~l~~~l~w--i~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~ 291 (1061)
|+.+++.++- +|+......-+...++-+... ..+...-..|+..++.+++. .... ++..+...-|.
T Consensus 196 Leil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~--l~~~-------~i~~llk~WP~ 266 (409)
T PF01603_consen 196 LEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS--LAEP-------VIKGLLKHWPK 266 (409)
T ss_dssp HHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--GHHH-------HHHHHHHHS-S
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHH-------HHHHHHHhCCC
Confidence 9999998873 343321111222222222222 34568888999999986542 2221 22333334443
Q ss_pred CCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 036770 292 TTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNS 366 (1061)
Q Consensus 292 ~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~ 366 (1061)
...-+ +.-|+..+..++.. ++ +.++.......+..+-.|...+...|++.++.||..
T Consensus 267 t~s~K---------ev~FL~el~~il~~--------~~-~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 267 TNSQK---------EVLFLNELEEILEV--------LP-PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp S-HHH---------HHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred CCchh---------HHHHHHHHHHHHHh--------cC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 21111 11233333222211 11 123344455566777788888888999999999976
No 99
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.21 E-value=3e+02 Score=26.44 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhc
Q 036770 17 LLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKY 80 (1061)
Q Consensus 17 ~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~ 80 (1061)
.++++|..+-++. ....-....++...+...+.+-..+...|. .+.++++...|+.+|+..+++
T Consensus 5 ~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkN 72 (140)
T PF00790_consen 5 SITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKN 72 (140)
T ss_dssp HHHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc
Confidence 4566666666554 112455667777888887766666665554 357899999999999999986
No 100
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=43.75 E-value=1.5e+02 Score=35.61 Aligned_cols=93 Identities=11% Similarity=0.112 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhcC--ChhHHHHHHHHH---HHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--------cCCcc
Q 036770 566 LKTVVNKLFEFMHET--HPGVQDMACDTF---LKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--------DLEPH 632 (1061)
Q Consensus 566 L~~vl~~L~~~~~~~--~~~v~~~A~~~f---~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--------~l~~~ 632 (1061)
.+.+++-++.++..+ +.+++..+..-+ ...++.|...+.. ..-..|......... .-+..
T Consensus 317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-------~l~~~i~~~g~p~~~~~~~~~~~~~~~~ 389 (501)
T PF13001_consen 317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-------LLRPVILSQGWPLIQDSSSQSNSSEDIE 389 (501)
T ss_pred CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-------HHHHHHHhcCccccccccccCCCcccHH
Confidence 345566666666554 667888888877 7777777765554 122223333333221 22345
Q ss_pred hHHHHHHHHhhhhccCCCHH-HHHHHHHHHhhch
Q 036770 633 QIHTFYESVGHMIQAESDVQ-KREEYLQRLMLLP 665 (1061)
Q Consensus 633 ~~~~l~eaig~li~~~~~~~-~~~~~l~~Ll~~~ 665 (1061)
.|...||++|.+....|.-- ....+++.|+..+
T Consensus 390 lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL 423 (501)
T PF13001_consen 390 LRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL 423 (501)
T ss_pred HHHHHHHHHHHHHccCcccccccHHHHHHHHHHh
Confidence 68889999999999998732 3345666655533
No 101
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=43.71 E-value=1.8e+02 Score=36.76 Aligned_cols=134 Identities=13% Similarity=0.166 Sum_probs=88.5
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcC
Q 036770 501 LCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHET 580 (1061)
Q Consensus 501 ~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~ 580 (1061)
+.-+++.|+..+... ...|...+++.++.-... .+..+... +++-|-.|+.. .-|..+...+.+++.+.
T Consensus 315 aa~~l~~ia~~lr~~-~~~~~~~v~p~lld~lke-----kk~~l~d~---l~~~~d~~~ns--~~l~~~~~~I~e~lk~k 383 (815)
T KOG1820|consen 315 AAQILELIAKKLRPL-FRKYAKNVFPSLLDRLKE-----KKSELRDA---LLKALDAILNS--TPLSKMSEAILEALKGK 383 (815)
T ss_pred HHHHHHHHHHhcchh-hHHHHHhhcchHHHHhhh-----ccHHHHHH---HHHHHHHHHhc--ccHHHHHHHHHHHhcCC
Confidence 455677777777655 566777777777754432 33333332 34444555553 34677888888899999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCH
Q 036770 581 HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 581 ~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~ 651 (1061)
+|+++..+...|.+..+.-....+. ..-+..++..+-....+-+.+-|.--++++|.+....+..
T Consensus 384 np~~k~~~~~~l~r~~~~~~~~~~~------~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 384 NPQIKGECLLLLDRKLRKLGPKTVE------KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred ChhhHHHHHHHHHHHHhhcCCcCcc------hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999988887766542222 1235556665555555656667888899999999887754
No 102
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=42.39 E-value=4.6e+02 Score=28.13 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=40.2
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-cCCcchHHHHHHHHhhhhccCCCHHHHHHH
Q 036770 579 ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-DLEPHQIHTFYESVGHMIQAESDVQKREEY 657 (1061)
Q Consensus 579 ~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-~l~~~~~~~l~eaig~li~~~~~~~~~~~~ 657 (1061)
+..|++...-|+.|..++- .+++|+..+..+.. .++..+-.+++-+++.+=.-...++.|..+
T Consensus 24 ~~~~~La~~LW~s~G~i~~----------------LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 24 ESFPDLAPLLWHSFGTIAA----------------LLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp CC-TTHHHHHHTSTTHHHH----------------HHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred hcccchhHHHHcCCChHHH----------------HHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 3445566666655554442 67777777765532 455666677787777654444456677778
Q ss_pred HHHHhhch
Q 036770 658 LQRLMLLP 665 (1061)
Q Consensus 658 l~~Ll~~~ 665 (1061)
++.=+...
T Consensus 88 l~a~iply 95 (262)
T PF04078_consen 88 LKAHIPLY 95 (262)
T ss_dssp HHTTGGGG
T ss_pred HHcCchhh
Confidence 87544333
No 103
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=42.08 E-value=2e+02 Score=28.56 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=55.5
Q ss_pred HhccchHHHH---HhHHHHHHHHHHHHH----hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHH
Q 036770 551 VVGQYPRFLR---AHWKFLKTVVNKLFE----FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLA 623 (1061)
Q Consensus 551 ~ig~y~~~l~---~~~~~L~~vl~~L~~----~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~ 623 (1061)
++..+...+. .|+.+...+=..+.. ....+++.+-.+++..|..+..+-|.++.. |.+-|+..++..+-
T Consensus 49 iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~----ele~~l~~i~~~il 124 (168)
T PF12783_consen 49 ILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKL----ELEVFLSHIILRIL 124 (168)
T ss_pred HHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5667777777 566776554444444 222345788889999999999998888875 34445555544222
Q ss_pred HhhhcCCcchHHHHHHHHhhhhc
Q 036770 624 TTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 624 ~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+-. .-+..++..+.|++..+.+
T Consensus 125 ~~~-~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 125 ESD-NSSLWQKELALEILRELCK 146 (168)
T ss_pred ccC-CCcHHHHHHHHHHHHHHHh
Confidence 111 1133456666677666653
No 104
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=41.28 E-value=2e+02 Score=36.11 Aligned_cols=127 Identities=14% Similarity=0.231 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHH
Q 036770 118 VNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLI 196 (1061)
Q Consensus 118 ~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I 196 (1061)
..-|+.++...=++.--..-|+.++=+++.++-.. ....-.++++..+-.|- ..+. ..++.++
T Consensus 888 l~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~-----~tL~-----------t~~~~Tl 951 (1030)
T KOG1967|consen 888 LEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES-----ETLQ-----------TEHLSTL 951 (1030)
T ss_pred HHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc-----cccc-----------hHHHhHH
Confidence 34444444433333322466778888888776543 22233444444444332 1122 2367777
Q ss_pred HHHHHHHHhhcCc--HHHHHHHHHHHHhcccccCcchhc--chhhHHHHHhhCCCcc--chHHHHHHHHH
Q 036770 197 HELCLYVLSASQR--TDLIRATLSTLHAFLSWIPLGYIF--ESPLLETLLKFFPMPS--YRNLTLQCLTE 260 (1061)
Q Consensus 197 ~~~~~~~L~~~~~--~~l~~~~L~~l~~~l~wi~~~~i~--~~~ll~~l~~~L~~~~--~~~~a~~cL~e 260 (1061)
+..+..+=..+.+ ..++..||+|+....+..|...+. .+..+..+.+.|+|+. +|..|++|=.+
T Consensus 952 vp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 952 VPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 7777654433332 457889999999999988887644 4788888889999885 78888887444
No 105
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.86 E-value=7e+02 Score=29.79 Aligned_cols=223 Identities=16% Similarity=0.115 Sum_probs=119.5
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc--cHHHHHHHHc------cCCChHHHHHHHHHHHHHHh---c
Q 036770 12 PMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPD--MWLQVVHILQ------NSKNLNTKFFALQVLEGVIK---Y 80 (1061)
Q Consensus 12 ~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~--aw~~~~~iL~------~s~~~~~rffaa~~L~~~I~---~ 80 (1061)
.|+++.+..++..=....+|..|.-.-.||.-+-..|+ ...+...++. ..+++++|-.+=.+|.+.+. .
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 68899999988643333477789999999999888776 2333333331 34567888877776666554 2
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCc----cchhHHHHHHHccCChhH--
Q 036770 81 RWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPAR----WRSFIPDLVAAAKTSETI-- 154 (1061)
Q Consensus 81 ~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~----Wp~~i~~l~~~~~~~~~~-- 154 (1061)
+-..+ +....-+-++.++.+ + ..+++.|+ .++..-+.+-+|.. -+..+.-++.++..++..
T Consensus 242 ~P~s~---d~~~~i~vlv~~l~s----s-----~~~iq~~a-l~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i 308 (675)
T KOG0212|consen 242 SPSSM---DYDDMINVLVPHLQS----S-----EPEIQLKA-LTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSI 308 (675)
T ss_pred Ccccc---CcccchhhccccccC----C-----cHHHHHHH-HHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccH
Confidence 22221 222222223322221 1 23444444 34434444444432 233334444444433321
Q ss_pred ----HHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcc
Q 036770 155 ----CENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLG 230 (1061)
Q Consensus 155 ----~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~ 230 (1061)
..++-.+++..++|... .+ -+...|++.+...+.. ...+...++|+-+.....-.|-.
T Consensus 309 ~~~a~~~n~~l~~l~s~~~~~---~~--------------id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 309 KEYAQMVNGLLLKLVSSERLK---EE--------------IDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---cc--------------cchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 11122244444444211 11 1345666666666653 33455566666555544444543
Q ss_pred hhc-chhhHHHHHhhCCCc--cchHHHHHHHHHHhcCc
Q 036770 231 YIF-ESPLLETLLKFFPMP--SYRNLTLQCLTEVGALN 265 (1061)
Q Consensus 231 ~i~-~~~ll~~l~~~L~~~--~~~~~a~~cL~ei~~~~ 265 (1061)
.+. .+++...+++.|+|+ ++-..+++.+.+|++-.
T Consensus 371 l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 371 LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 322 367888888888764 56788999999998743
No 106
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=40.44 E-value=1.3e+03 Score=32.83 Aligned_cols=100 Identities=12% Similarity=0.152 Sum_probs=61.6
Q ss_pred chhhHHHHHHHhhhCCCChhHHhHHHH-HHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH-HHHHHHH
Q 036770 496 NNLNTLCWAIGSISGSMMEEQENRFLV-MVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL-KTVVNKL 573 (1061)
Q Consensus 496 ~~le~~~~algsis~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L-~~vl~~L 573 (1061)
.....++|+++.++.+..++.-..++. .+++.|+++.... ...+....+..++....+-....++. ...+..|
T Consensus 666 ~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-----d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~L 740 (2102)
T PLN03200 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-----SIEVAEQAVCALANLLSDPEVAAEALAEDIILPL 740 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-----ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHH
Confidence 344567999999998665432122232 2577777777542 12222323334444433332323333 3457778
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 574 FEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 574 ~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
...+++.+++++..|+.++..+|+.+.
T Consensus 741 v~lLr~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 741 TRVLREGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHhCCC
Confidence 888888889999999999999998654
No 107
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=39.24 E-value=2.3e+02 Score=25.95 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH--HHHHHHHHhhcCch
Q 036770 35 TAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN--YISEVIVQLSSNEA 109 (1061)
Q Consensus 35 ~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~--~ll~~l~~~~~~~~ 109 (1061)
....++..-....++....+...|. .++++.+.+.|+.+|+..+++- ++.-+..++. ++..++.....+..
T Consensus 19 ~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~----g~~f~~~i~~~~~~~~l~~~~~~~~~ 94 (115)
T cd00197 19 PLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNC----GERFHQEVASNDFAVELLKFDKSKLL 94 (115)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHc----cHHHHHHHHHhHHHHHHHHhhccccc
Confidence 3444455555555555444444442 3458999999999999999863 3333333322 33333321000000
Q ss_pred hhhhhHHHHHHHHHHHH
Q 036770 110 SFREERLYVNKLNIILV 126 (1061)
Q Consensus 110 ~~~~~~~v~~kl~~~la 126 (1061)
.......||+|+-.++.
T Consensus 95 ~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 95 GDDVSTNVREKAIELVQ 111 (115)
T ss_pred cCCCChHHHHHHHHHHH
Confidence 01124678888877664
No 108
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=39.19 E-value=1.9e+02 Score=29.32 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH-hhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQK-CKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~-c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
...|.-+++++++...--+--|...+..+.+. ....+. |.+.+++.-+......-+++-.....+++..++
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil--------PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv 108 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL--------PVLPQLIIPLKRALNTRDPEVFCATLKALQQLV 108 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH--------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45566778888765444567777888888877 555555 478888888877665555666666677777775
Q ss_pred ccCCC-HHHHHHHHHHHhhchH
Q 036770 646 QAESD-VQKREEYLQRLMLLPN 666 (1061)
Q Consensus 646 ~~~~~-~~~~~~~l~~Ll~~~~ 666 (1061)
.+.+. .+.-..+..+|+..++
T Consensus 109 ~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 109 TSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HhhhhhhHHHHHHHHHHHHHHH
Confidence 44333 1222345666555443
No 109
>PTZ00429 beta-adaptin; Provisional
Probab=38.52 E-value=9.2e+02 Score=30.48 Aligned_cols=107 Identities=13% Similarity=0.168 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHH--HHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 520 FLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLK--TVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 520 ~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~--~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
++..++..+-....+. +..+.++.++ .+.+. +..+|+... ..++.|.+.+.++++.|...|..+|..|+.
T Consensus 137 i~e~l~~~lkk~L~D~----~pYVRKtAal-ai~Kl---y~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 137 VLEYTLEPLRRAVADP----DPYVRKTAAM-GLGKL---FHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHHhcCC----CHHHHHHHHH-HHHHH---HhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4444555554444331 3344444343 55543 233444322 234455555678899999999999999998
Q ss_pred HhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhh
Q 036770 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 598 ~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.+...+... .+++..+++. ....+.-.+..+.+.+..
T Consensus 209 ~~~~~l~l~-----~~~~~~Ll~~----L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 209 YGSEKIESS-----NEWVNRLVYH----LPECNEWGQLYILELLAA 245 (746)
T ss_pred hCchhhHHH-----HHHHHHHHHH----hhcCChHHHHHHHHHHHh
Confidence 775433210 1233333333 334556667888888855
No 110
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=38.35 E-value=4.1e+02 Score=26.35 Aligned_cols=80 Identities=11% Similarity=0.139 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh-hhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHh
Q 036770 564 KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC-KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVG 642 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c-~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig 642 (1061)
..+...+.++...++.+++.-+-.++.++..+|+.| ...|.. ...+++..++..+++ .-+.........+++
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~----~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLS----HGSQWLRALLSILEK---PDPPSVLEAAIITLT 93 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHcC---CCCHHHHHHHHHHHH
Confidence 344555555566666666777889999999999999 566654 223455555554433 223334556667777
Q ss_pred hhhccCCC
Q 036770 643 HMIQAESD 650 (1061)
Q Consensus 643 ~li~~~~~ 650 (1061)
.+......
T Consensus 94 ~l~~~~~~ 101 (165)
T PF08167_consen 94 RLFDLIRG 101 (165)
T ss_pred HHHHHhcC
Confidence 76655443
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=38.18 E-value=7.7e+02 Score=29.48 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
-...+++.+..|+|+-..+.+--+.+++.++|-...++-. .+++-+.+.+.+ .+. .+=+....+|+..+
T Consensus 372 ~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--------s~l~FL~~~L~~-eGg--~eFK~~~Vdaisd~ 440 (898)
T COG5240 372 TIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--------SYLDFLGSSLLQ-EGG--LEFKKYMVDAISDA 440 (898)
T ss_pred hHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH--------HHHHHHHHHHHh-ccc--chHHHHHHHHHHHH
Confidence 4556777777789877777888899999999976443211 244433333332 223 34467889999999
Q ss_pred hccCCCHHHHHHHHHHHhhch
Q 036770 645 IQAESDVQKREEYLQRLMLLP 665 (1061)
Q Consensus 645 i~~~~~~~~~~~~l~~Ll~~~ 665 (1061)
++..|+. |+..++.|+..+
T Consensus 441 ~~~~p~s--kEraLe~LC~fI 459 (898)
T COG5240 441 MENDPDS--KERALEVLCTFI 459 (898)
T ss_pred HhhCchH--HHHHHHHHHHHH
Confidence 9998865 456788887754
No 112
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.99 E-value=41 Score=23.90 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHH
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIV 596 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~ 596 (1061)
.+..|...++.+++.++..|+.++..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4556666666678899999999999886
No 113
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=37.95 E-value=1.3e+02 Score=28.16 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHhccchHHHHHhHHHHHH--HHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 548 IMYVVGQYPRFLRAHWKFLKT--VVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 548 i~~~ig~y~~~l~~~~~~L~~--vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
.++=||.|.++....-..+.. +=..+.+.|.++++.|+..|..+..++..
T Consensus 64 ac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 64 ACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556788877775444344422 23445556777899999999999888764
No 114
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=37.34 E-value=65 Score=27.14 Aligned_cols=51 Identities=27% Similarity=0.503 Sum_probs=31.8
Q ss_pred hhhHHHHHHHhhhCCCChhHHhHHHH--HHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 497 NLNTLCWAIGSISGSMMEEQENRFLV--MVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 497 ~le~~~~algsis~~~~~~~e~~~l~--~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
++-+++||+|.|+.... .-.++. .+++.++++.+.. +-.-++.+.+|++|-
T Consensus 3 ~lKaaLWaighIgss~~---G~~lL~~~~iv~~iv~~a~~s----~v~siRGT~fy~Lgl 55 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL---GIQLLDESDIVEDIVKIAENS----PVLSIRGTCFYVLGL 55 (73)
T ss_pred HHHHHHHHHHhHhcChH---HHHHHhhcCHHHHHHHHHHhC----CccchHHHHHHHHHH
Confidence 45678999999976422 123443 4667777777642 444555657777774
No 115
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.00 E-value=1.6e+02 Score=36.08 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcC
Q 036770 208 QRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 208 ~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~ 266 (1061)
.++.++..+--|...+-. ++.+......+++.+-..+. +|.+...|+..|.+|...++
T Consensus 133 ~~~yvRktaa~~vakl~~-~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 133 DDPYVRKTAAVCVAKLFD-IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred CChhHHHHHHHHHHHhhc-CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 345566666566655543 34455555678888887765 45677888889999988654
No 116
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.71 E-value=7.2e+02 Score=28.42 Aligned_cols=223 Identities=17% Similarity=0.179 Sum_probs=115.2
Q ss_pred HHHHHHHhhcC-----CccchhHHHHHH-HccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHH
Q 036770 124 ILVQILKHEWP-----ARWRSFIPDLVA-AAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIH 197 (1061)
Q Consensus 124 ~la~i~~~~~p-----~~Wp~~i~~l~~-~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~ 197 (1061)
-++.++++. | ..|..+.+.+.. .+..+....-.++++++.+.....+ + +.-..-+ +-
T Consensus 6 ~Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-----l--------~~~~~l~---id 68 (371)
T PF14664_consen 6 DLVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-----L--------QILLKLH---ID 68 (371)
T ss_pred HHHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-----H--------HHHHHcC---Cc
Confidence 345566664 4 378889988875 4455556777899999987543211 0 0000011 22
Q ss_pred HHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCC-----cc
Q 036770 198 ELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFG-----DF 269 (1061)
Q Consensus 198 ~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~-----~~ 269 (1061)
-++...|.... +..=+..||+.+..|+..-.-...+...++..+..... ++.+|..|++.|+|++-.++. +.
T Consensus 69 ~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG 148 (371)
T PF14664_consen 69 IFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGG 148 (371)
T ss_pred hhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCC
Confidence 23334444432 22235688888888886521111234556666665544 445888999999998876441 11
Q ss_pred hHH---HHH----HHHHHHHHHH---------HhhCCCCCChhhhhc---CC----CcchH--HHHHHHHHHHHHHHHHH
Q 036770 270 YNV---QYV----NMYNVFMVQL---------QTILPPTTNIPEAYA---HG----NSEEQ--AFIQNLALFFTSFFKFH 324 (1061)
Q Consensus 270 ~~~---~~~----~~f~~~l~~l---------~~~l~~~~~l~~~~~---~~----~~~d~--~~~~~l~~l~~~~~~~~ 324 (1061)
+.. .+. ++-+.++..+ ..++..+.++...+. +. ..++. +..++-+..++.+..+.
T Consensus 149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW 228 (371)
T PF14664_consen 149 IRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSW 228 (371)
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcC
Confidence 110 000 0001111111 122222333332221 11 11222 46677777777777775
Q ss_pred HHHhccc-hhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHH
Q 036770 325 IRVLEST-QENISALLMGLEYLINISYVDETEVFKVCLDYWNSFV 368 (1061)
Q Consensus 325 ~~ile~~-~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~ 368 (1061)
..++--. +++. ++.-|+.+..+|..++-+..++....+.
T Consensus 229 ~GLl~l~~~~~~-----~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 229 PGLLYLSMNDFR-----GLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred CceeeeecCCch-----HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4444211 1222 2355666668888888888887766655
No 117
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=35.13 E-value=3e+02 Score=34.67 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 518 NRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 518 ~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
.+|..++++.|.+..+. .....|..+...+-.++++-|. ..--+.++.+++.|++++.=+.+.||-.+-.+|.-+..
T Consensus 862 QRfF~~ivP~l~~~~~t-~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFET-APGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHhhHHHHHHHhcc-CCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 46677778877776652 2234555555545567777665 11223567788888887766667788888888888887
Q ss_pred HhhhcccccccCCCchHHHHHHHhHHHhhhcCC---cchHHHHHHHHhhhhccCCCH
Q 036770 598 KCKRKFVIVQVGENEPFVSELLSGLATTVADLE---PHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 598 ~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~---~~~~~~l~eaig~li~~~~~~ 651 (1061)
.....+.. ++..++..+-.+..+-+ .-.|....++++.+...+|..
T Consensus 939 ~~~tL~t~--------~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 939 ESETLQTE--------HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hccccchH--------HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 76665544 67888877766544333 223566677777777767764
No 118
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=34.65 E-value=2.4e+02 Score=24.53 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=46.0
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLL 887 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~ 887 (1061)
.++|+|.--.+.+..++..+.+.+- ...+.+++.+..+.++.+.++.+.|++++.
T Consensus 30 ~~~~vre~il~ci~qil~~~~~~i~----SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRGENIK----SGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 6789999999999999998877662 247888888888999999999999988764
No 119
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.39 E-value=1.3e+02 Score=38.52 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=65.2
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFV 908 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~ 908 (1061)
-.|++|.....-|+--++.+|++|++ ..++..+.|++..-+.+|-..|+++|..|..+-........|.++|=.
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~------dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLS------DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhc------chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 36899999999999999999999975 457889999999999999999999999998874334566777777766
Q ss_pred HHHH
Q 036770 909 TIEQ 912 (1061)
Q Consensus 909 ~~~~ 912 (1061)
.++.
T Consensus 373 RIVe 376 (1048)
T KOG2011|consen 373 RIVE 376 (1048)
T ss_pred HHHH
Confidence 6664
No 120
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.14 E-value=3.1e+02 Score=26.43 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcc
Q 036770 34 RTAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYR 81 (1061)
Q Consensus 34 r~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~ 81 (1061)
-....+++..+...+.+-..|...+. .++|+++..+|+.+|+..+++-
T Consensus 19 w~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNC 69 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNC 69 (139)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 33445555555555554444444332 3678999999999999999863
No 121
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=33.73 E-value=1.9e+02 Score=26.60 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccc
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFV 604 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~ 604 (1061)
+.|...|..+-+.++..+...+....|.-+-.+.|++-.|++.|+..-.
T Consensus 25 t~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~ 73 (114)
T cd03562 25 TKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYK 73 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchH
Confidence 4566666777778888887777766677788999999999999987544
No 122
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.58 E-value=1.3e+03 Score=30.61 Aligned_cols=181 Identities=17% Similarity=0.177 Sum_probs=95.6
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH-------------
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA------------- 561 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~------------- 561 (1061)
-..+++++=+++.|-+ +.+.+++-|.--+++.|-.++........+..+|+|+.-+.-.-.+|+..
T Consensus 480 a~Al~Tlt~~L~~Vr~-~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~ 558 (1431)
T KOG1240|consen 480 ATALETLTELLALVRD-IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDP 558 (1431)
T ss_pred HHHHHHHHHHHhhccC-CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 3455666666755543 44444566777788877777765433446677777775333333444431
Q ss_pred ----hH--------HHHHHHHHHHH-HhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhc
Q 036770 562 ----HW--------KFLKTVVNKLF-EFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVAD 628 (1061)
Q Consensus 562 ----~~--------~~L~~vl~~L~-~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~ 628 (1061)
++ .-|...+...+ +++.++.+.|+..-...+..+|.= |...+.+ +-|+..+-....+
T Consensus 559 nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~F----FGk~ksN------D~iLshLiTfLND 628 (1431)
T KOG1240|consen 559 NSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVF----FGKEKSN------DVILSHLITFLND 628 (1431)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH----hhhcccc------cchHHHHHHHhcC
Confidence 00 11222333333 356666678887777776666642 2221111 1233344333344
Q ss_pred CCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhh
Q 036770 629 LEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASA 705 (1061)
Q Consensus 629 l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~ 705 (1061)
-+..-|..|||+|..+.-.++... -.+|+-.||+ +.-+| .++. .+...|+|+..+|+.
T Consensus 629 kDw~LR~aFfdsI~gvsi~VG~rs-~seyllPLl~-----------Q~ltD----~EE~---Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 629 KDWRLRGAFFDSIVGVSIFVGWRS-VSEYLLPLLQ-----------QGLTD----GEEA---VIVSALGSLSILIKL 686 (1431)
T ss_pred ccHHHHHHHHhhccceEEEEeeee-HHHHHHHHHH-----------HhccC----cchh---hHHHHHHHHHHHHHh
Confidence 466678999999987666655321 1234433322 11122 1222 357777888777773
No 123
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=33.48 E-value=7.1e+02 Score=27.66 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 036770 932 LVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDF 1011 (1061)
Q Consensus 932 ~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF 1011 (1061)
.++..++.+...+++...| ..|-..+..|+.+. +++-++...|...+-+.-.+.++.....+-+
T Consensus 125 ~Vy~~lv~la~~~~~~~~i----------~~~lk~~~~~lkew------~~~vedqrel~r~v~~al~~~k~~~~s~kvm 188 (378)
T KOG2753|consen 125 QVYMSLVTLAASCKLIEYI----------VPNLKQLDDWLKEW------NISVEDQRELLRAVHKALKDNKSVDESSKVM 188 (378)
T ss_pred HHHHHHHHHHhhcceeeee----------cccHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 3555555555555443332 14456677787776 6676776666665555433444455555555
Q ss_pred HhhhhhcccCCChhhhHHHHHHHH
Q 036770 1012 LVQSKEFSAQDNKDLYAEEAAAQR 1035 (1061)
Q Consensus 1012 ~~~~k~~~~~~~~~l~~~e~~~~~ 1035 (1061)
..-+--|+. |+. .+.||++.
T Consensus 189 t~lLgtyt~-dna---s~AredA~ 208 (378)
T KOG2753|consen 189 TELLGTYTE-DNA---SEAREDAM 208 (378)
T ss_pred HHHHHHhcc-cch---hHHHHHHH
Confidence 555555655 552 25555553
No 124
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=32.30 E-value=9.7e+02 Score=30.51 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=46.1
Q ss_pred CChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 829 DYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
-+|-.+.....++.+....... ...+......++-.++...+..+.+|-+.++..+..++...+
T Consensus 383 knp~~k~~~~~~l~r~~~~~~~--~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 383 KNPQIKGECLLLLDRKLRKLGP--KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CChhhHHHHHHHHHHHHhhcCC--cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 4677788878888877776543 112344667777777777778888999998888887776665
No 125
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.46 E-value=1.2e+03 Score=29.03 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh
Q 036770 565 FLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601 (1061)
Q Consensus 565 ~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~ 601 (1061)
=+..+++.+...+.+.++.|.-.|.+.+++..+.-..
T Consensus 236 ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 236 EAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred hHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 4556778888777667788888888888888765443
No 126
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.16 E-value=3e+02 Score=26.15 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhh
Q 036770 35 TAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASF 111 (1061)
Q Consensus 35 ~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~ 111 (1061)
....++...+..++.+-..+...|. .+++++++..|+.+|+..+++-=..+- ..-.=|.++.+ +.+......
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~--~~i~s~~fl~~-l~~l~~~~~-- 93 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFH--LQVADKEFLLE-LVKIAKNSP-- 93 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHH--HHHhhHHHHHH-HHHHhCCCC--
Confidence 3444455555555444444444332 246889999999999999886321111 11111445555 333332210
Q ss_pred hhhHHHHHHHHHHHH
Q 036770 112 REERLYVNKLNIILV 126 (1061)
Q Consensus 112 ~~~~~v~~kl~~~la 126 (1061)
..+.-|++|+..++.
T Consensus 94 ~~~~~Vk~kil~ll~ 108 (133)
T cd03561 94 KYDPKVREKALELIL 108 (133)
T ss_pred CCCHHHHHHHHHHHH
Confidence 123457777766664
No 127
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.62 E-value=1.6e+03 Score=30.43 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=56.7
Q ss_pred CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHH
Q 036770 491 EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVV 570 (1061)
Q Consensus 491 ~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl 570 (1061)
+.+-|+.++.++--+ +...+.++++.+..+....-|-..|.-+++-+.-++-| +-..+..|-...+
T Consensus 1214 sspmmeTi~~ci~~i-----------D~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r---~~~emtP~sgKll 1279 (1702)
T KOG0915|consen 1214 SSPMMETINKCINYI-----------DISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR---LGSEMTPYSGKLL 1279 (1702)
T ss_pred CCcHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH---hccccCcchhHHH
Confidence 345677766644322 23455566666666665555655666666644434444 3345566777777
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..+|.+..+.++.++..-+.+..++++-
T Consensus 1280 ~al~~g~~dRNesv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1280 RALFPGAKDRNESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHhc
Confidence 7777777777777777666666666653
No 128
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=26.45 E-value=1.2e+03 Score=28.16 Aligned_cols=263 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhc-----CcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHH
Q 036770 29 GSKEERTAADQILRDLQN-----NPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQ 103 (1061)
Q Consensus 29 ~~~~~r~~A~~~L~~fq~-----s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~ 103 (1061)
++++.++-|-+++-+|-+ ..+|......+. ...+..+|-.|..-|-...+ =.++...-+-+-|.+++..
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck-----~~~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLC-EDEDVQIRKQAIKGLPQLCK-----DNPEHVSKVADVLVQLLQT 107 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHH-T-SSHHHHHHHHHHGGGG-------T--T-HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hcccHHHHHHHHHhHHHHHH-----hHHHHHhHHHHHHHHHHhc
Q ss_pred hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccch--HHH
Q 036770 104 LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMT--QQK 181 (1061)
Q Consensus 104 ~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~--~~r 181 (1061)
++..-++-.-.+|..+++.+-...-..++.++...-...+...+ ++|+.|.+=+.....+.++ .+-
T Consensus 108 ---------dd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re---~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 108 ---------DDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRE---RALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp -----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHH---HHHHHHHHHGGGS-TTTS---HHH
T ss_pred ---------ccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHH---HHHHHHHHHHhhCcHHHhhchHHH
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHhhc-------------------------------CcHHHHHHHHHHHHhcccc
Q 036770 182 IKELKQSLNSEFQLI----HELCLYVLSAS-------------------------------QRTDLIRATLSTLHAFLSW 226 (1061)
Q Consensus 182 ~~~l~~~l~~~~~~I----~~~~~~~L~~~-------------------------------~~~~l~~~~L~~l~~~l~w 226 (1061)
-..+.+.+...+.+| |.++..+|... .+++.+...+.|+..=+.+
T Consensus 176 e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~ 255 (556)
T PF05918_consen 176 EEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPF 255 (556)
T ss_dssp HHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHH
Q ss_pred cCcchhcchhhHHHHH-hhCC-----CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhc
Q 036770 227 IPLGYIFESPLLETLL-KFFP-----MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYA 300 (1061)
Q Consensus 227 i~~~~i~~~~ll~~l~-~~L~-----~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~ 300 (1061)
...+ +-++.++..++ +.|+ .++.+..-+..+.|+.......+..+.+..+| ..+..++|...
T Consensus 256 fs~~-v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~----~~L~~ymP~~~------- 323 (556)
T PF05918_consen 256 FSRG-VSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIF----QLLKKYMPSKK------- 323 (556)
T ss_dssp -BTT-B--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHH----HHHHTTS-----------
T ss_pred hcCC-CChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHH----HHHHHhCCCCC-------
Q ss_pred CCCcchHHHHHHHHHHHHHHH
Q 036770 301 HGNSEEQAFIQNLALFFTSFF 321 (1061)
Q Consensus 301 ~~~~~d~~~~~~l~~l~~~~~ 321 (1061)
...+.+..+++.+--.+..++
T Consensus 324 ~~~~l~fs~vEcLL~afh~La 344 (556)
T PF05918_consen 324 TEPKLQFSYVECLLYAFHQLA 344 (556)
T ss_dssp ------HHHHHHHHHHHHHHH
T ss_pred CCCcccchHhhHHHHHHHHHh
No 129
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.43 E-value=1.6e+03 Score=29.55 Aligned_cols=666 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHhccc------ccCcchhcchhhHHHHHhhCC-CccchHHHHHHHHH
Q 036770 189 LNSEFQLIHELCLYVLSA-SQRTDLIRATLSTLHAFLS------WIPLGYIFESPLLETLLKFFP-MPSYRNLTLQCLTE 260 (1061)
Q Consensus 189 l~~~~~~I~~~~~~~L~~-~~~~~l~~~~L~~l~~~l~------wi~~~~i~~~~ll~~l~~~L~-~~~~~~~a~~cL~e 260 (1061)
|+..++++++.+..++.. +.+..++..++.||...+. |- ..-.-+.+..++.-.++ .|..|..|.+.+..
T Consensus 87 L~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~--~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~ 164 (1176)
T KOG1248|consen 87 LQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWS--YSSTKTELFGILAFAAHKKPKVRKAAQRGIAA 164 (1176)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhc--cccHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q ss_pred HhcCcC--CcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccc-------
Q 036770 261 VGALNF--GDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLEST------- 331 (1061)
Q Consensus 261 i~~~~~--~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~------- 331 (1061)
++.-.+ ++.-..-....-...+..+.... ...+..+..+.|+.+-.-+-.--...+++-
T Consensus 165 VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~------------~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i 232 (1176)
T KOG1248|consen 165 VLKGPPFAPDAEHPASLSVAKFCLALIESKL------------GSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNI 232 (1176)
T ss_pred HHcCCCCCccccchHHHHHHHHHHHHHHhhh------------chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Q ss_pred -------------------------------------------------hhhHHHHHHHHHHHHHhhccChhhHHHHHHH
Q 036770 332 -------------------------------------------------QENISALLMGLEYLINISYVDETEVFKVCLD 362 (1061)
Q Consensus 332 -------------------------------------------------~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~ 362 (1061)
-.....+...-.....+...+.+-....+..
T Consensus 233 ~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~ 312 (1176)
T KOG1248|consen 233 TTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPR 312 (1176)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCc
Q 036770 363 YWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENG 442 (1061)
Q Consensus 363 fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~ 442 (1061)
+...+.. +.. ....+.++.+...+..++-.-.+ +++.-.
T Consensus 313 ~~~~~~t-~~~---------------------------------s~~~e~~q~a~q~l~~il~~sv~-------~~~~~c 351 (1176)
T KOG1248|consen 313 LFSLFFT-ILE---------------------------------SLIEELVQAASQSLKEILKESVT-------VIDALC 351 (1176)
T ss_pred hhhHHHH-HHh---------------------------------cccHHHHHHHHHHHHHHhcccCc-------ccHHHH
Q ss_pred hhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhc--cCCccccchhhHHHHHHHhhhCCCChhH----
Q 036770 443 NIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQL--SGEDWTWNNLNTLCWAIGSISGSMMEEQ---- 516 (1061)
Q Consensus 443 e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~--~~~~~~w~~le~~~~algsis~~~~~~~---- 516 (1061)
..--+-.-|.-.-..|+..=..+..+..-..+..-..|...|.... ...+-..... .+-.|+|+-..+|.|+.
T Consensus 352 ~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~-~ld~~IGSAV~AmGPe~vL~~ 430 (1176)
T KOG1248|consen 352 SKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKL-QLDQCIGSAVRAMGPERVLTI 430 (1176)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHH-HHHHHHHHHHHhhCHHHHHHH
Q ss_pred ---------------------------------HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH--
Q 036770 517 ---------------------------------ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA-- 561 (1061)
Q Consensus 517 ---------------------------------e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~-- 561 (1061)
-+.|+|-+...-....+-+.....+..+.+....+-+=.|.|...
T Consensus 431 lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~ 510 (1176)
T KOG1248|consen 431 LPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPV 510 (1176)
T ss_pred cchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCc
Q ss_pred hHHH-HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh---------hhcccccccCCCchHHHHHHHhHHHhhhcCCc
Q 036770 562 HWKF-LKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC---------KRKFVIVQVGENEPFVSELLSGLATTVADLEP 631 (1061)
Q Consensus 562 ~~~~-L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c---------~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~ 631 (1061)
.... ++..-.-+..++.. .+.++...|.++..+...| +..+.. +....+..+-.+...-+.
T Consensus 511 Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~--------~AknfL~~lfn~ytq~~~ 581 (1176)
T KOG1248|consen 511 DLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAAENKEVLSN--------DAKNFLPRLFNVYTQTVA 581 (1176)
T ss_pred cHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhh--------hhhHHHHHHHHHhcCCCc
Q ss_pred chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhH
Q 036770 632 HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFL 711 (1061)
Q Consensus 632 ~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~ 711 (1061)
..+ +..+.....+.. .+..+++.--......+..-++....+++ +.-.......+|..+..++........
T Consensus 582 ~~~-~~l~~~~~~L~~-----i~~~~~~~t~~dv~~~l~~s~~e~as~~~---~s~~~~~~~slLdl~~~~a~~~~e~~v 652 (1176)
T KOG1248|consen 582 AGR-KILASRSTVLEI-----IRVDYFTVTPTDVVGSLKDSAGELASDLD---ESVASFKTLSLLDLLIALAPVQTESQV 652 (1176)
T ss_pred ccc-ccHHHHHHHHHH-----HHHHHhhcccHHHHHHHHHHHHhHhccch---hhhhhHHHHHHHHHHHhhhccccchhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhc------------
Q 036770 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQ------------ 779 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~------------ 779 (1061)
..+-.+.|... ...-..+++..-++++..+.. +..+....+
T Consensus 653 s~l~~v~~~~e--------------------------~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds 705 (1176)
T KOG1248|consen 653 SKLFTVDPEFE--------------------------NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDS 705 (1176)
T ss_pred HHHHHhhHHhh--------------------------ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHH
Q ss_pred --CCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHH---------------HHhHHhh--h---hccCCC-hHhHHH
Q 036770 780 --NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIF---------------QCTLEMI--T---KNFEDY-PEHRLK 836 (1061)
Q Consensus 780 --~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~---------------~~tl~~i--~---~~~~~~-Pd~~~~ 836 (1061)
+.+..-...-|.|+..++...+......++..+..+. +|...|. + ++..+- ++....
T Consensus 706 ~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne 785 (1176)
T KOG1248|consen 706 FQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE 785 (1176)
T ss_pred HhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH
Q ss_pred HHHHHHHH------------HhhchhHhhc----CChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHH
Q 036770 837 FFSLLRAI------------ATHCFPALIR----LSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCN 900 (1061)
Q Consensus 837 ~f~ll~~i------------~~~~~~~l~~----~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~ 900 (1061)
|+..+..- +-.....++. +..+.+..+++.+.--+....|+|.+.|+.|+.-++...- .
T Consensus 786 fl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p-----e 860 (1176)
T KOG1248|consen 786 FLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP-----E 860 (1176)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-----H
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCC
Q 036770 901 QFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFP 980 (1061)
Q Consensus 901 ~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp 980 (1061)
.-.+.+...+++.+|...-| |+-.+......|.+.+-. ++..+.+..|+.+.....++
T Consensus 861 ~~l~~~~~~LL~sll~ls~d--~k~~~r~Kvr~LlekLir--------------------kfg~~eLe~~~pee~~klL~ 918 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHD--HKIKVRKKVRLLLEKLIR--------------------KFGAEELESFLPEEDMKLLT 918 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHH--------------------HhCHHHHHhhCHHHHHHHHH
Q ss_pred CC
Q 036770 981 NM 982 (1061)
Q Consensus 981 ~~ 982 (1061)
++
T Consensus 919 nI 920 (1176)
T KOG1248|consen 919 NI 920 (1176)
T ss_pred HH
No 130
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=26.06 E-value=1.5e+02 Score=28.16 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
.++..|-.-+..++|.++..|..++-.+.+.|...|..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~ 74 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHL 74 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHH
Confidence 34444555455678999999999999999999886653
No 131
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.79 E-value=3.4e+02 Score=33.03 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSII 868 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~ 868 (1061)
+|.-++..|+.+... ...++++|+.. .- ..-.|+.+..|.+|+..++..++. .+..+++.++
T Consensus 56 ~L~~L~~~Vs~Ld~~----~~~LV~ail~~-----~W-~~~~~~~v~~y~~Fl~~Lvsa~~~--------yl~~vl~~LV 117 (563)
T PF05327_consen 56 WLKALSSCVSLLDSS----CKQLVEAILSL-----NW-LGRDEDFVEAYIQFLINLVSAQPK--------YLSPVLSMLV 117 (563)
T ss_dssp HHHHHHHGGGGG-SC----CHHHHHHHHT------TG-GGS-HHHHHHHHHHHHHHHHH-GG--------GHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH----HHHHHHHHHcC-----CC-CCCCHHHHHHHHHHHHHHHHhhHH--------HHHHHHHHHH
Confidence 445555555555443 34444444422 11 124578999999999998876544 3466677766
Q ss_pred HHhcCCC
Q 036770 869 WAFRHTE 875 (1061)
Q Consensus 869 ~~~~~~~ 875 (1061)
..+..+.
T Consensus 118 ~~f~p~~ 124 (563)
T PF05327_consen 118 KNFIPPP 124 (563)
T ss_dssp HGGGS-H
T ss_pred HhccCCC
Confidence 6665544
No 132
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=25.74 E-value=2.3e+02 Score=26.43 Aligned_cols=69 Identities=12% Similarity=0.240 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhc-CcccHHHHH---------HHHccCCChHHHHHHHHHHHHHHhcccC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQN-NPDMWLQVV---------HILQNSKNLNTKFFALQVLEGVIKYRWN 83 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~---------~iL~~s~~~~~rffaa~~L~~~I~~~w~ 83 (1061)
|.+.+..++..+..+.|+....-|-.=|.+|-+ .|.+=.++. .++ ++.|++||+-|+.++...+.+.|.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELM-NHEDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHT-S-SSHHHHHHHHHHHHHHHHHS--
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCC
Confidence 567777888877665566555555555666554 677655543 233 457999999999999999999884
No 133
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=25.69 E-value=2.9e+02 Score=24.98 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 036770 859 QLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDT 921 (1061)
Q Consensus 859 ~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~ 921 (1061)
.++.++-.+.-|++|-.++|..-++.+|.-+++..... .+..+...+++..+.++.-.
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~-----~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE-----LCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH-----hHhhhHHHHHHHHHHHHCCC
Confidence 56777778889999999999999999999999887422 23333334555555555443
No 134
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.08 E-value=1.9e+02 Score=28.02 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
.++..|-.-+...+|.++..|..++-.+++.|...|..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ 78 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHD 78 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34444445455578999999999999999999876653
No 135
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=24.96 E-value=6.6e+02 Score=24.58 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhh-hccCCChHhHHHHHHHHHHHHhhchh
Q 036770 787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMIT-KNFEDYPEHRLKFFSLLRAIATHCFP 850 (1061)
Q Consensus 787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~-~~~~~~Pd~~~~~f~ll~~i~~~~~~ 850 (1061)
..+.+++..+|-|+.. ..+.+++..+++|...-+. .+....++-+..||+|+.++..+.=.
T Consensus 39 ~~v~~~~~~lV~KLnE---~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKs 100 (153)
T PF08146_consen 39 SSVISAFVSLVLKLNE---ATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKS 100 (153)
T ss_pred HHHHHHHHHHHHHccc---chhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHH
Confidence 4578888888888864 4667889899999765333 34566788899999999998876433
No 136
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.86 E-value=2.6e+02 Score=26.91 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
.++..+-.-+.+.+|.++..|..++-.+++.|+..|..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ 75 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHS 75 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 34444555566778999999999999999999986653
No 137
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=24.07 E-value=5.1e+02 Score=25.61 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHHHhcccCCCC-----HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhc---C
Q 036770 63 NLNTKFFALQVLEGVIKYRWNALP-----VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEW---P 134 (1061)
Q Consensus 63 ~~~~rffaa~~L~~~I~~~w~~l~-----~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~---p 134 (1061)
+...|-+|+.++...+...-..+. ++-...+|+.+...+.+....+. ..+-.....++..++.+.- .
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-----~~i~~~slri~~~l~~~~~~~Lk 109 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-----FPIFSRSLRIFLTLLSRFRSHLK 109 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999986533222 35667889999888877543221 2222333344444443321 1
Q ss_pred CccchhHHHHHH-Hcc---CChhHHHHHHHHHHHHHH
Q 036770 135 ARWRSFIPDLVA-AAK---TSETICENCMAILKLLSE 167 (1061)
Q Consensus 135 ~~Wp~~i~~l~~-~~~---~~~~~~~~~L~iL~~l~E 167 (1061)
.+-.-|++.++. .+. ++..+.+..|++++.++.
T Consensus 110 ~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 110 LELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 122334444444 221 123455666666666654
No 138
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=23.09 E-value=2.4e+02 Score=28.63 Aligned_cols=69 Identities=19% Similarity=0.330 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHH
Q 036770 789 VLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMD 865 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~ 865 (1061)
++..+.+.+.++.. +.+++..++..+. ++..=.++.+.+.|..+++.+-.+.+..++.+|+++++.+++
T Consensus 112 fmRTviq~~~~~p~-L~~FV~~iL~rLi-------~kqvW~~~~lW~Gfi~C~~~~~p~sf~~ll~LP~~ql~~~l~ 180 (183)
T PF12295_consen 112 FMRTVIQALQKYPS-LRSFVSNILSRLI-------QKQVWKNKKLWEGFIKCAKRLKPSSFPALLQLPPEQLEELLK 180 (183)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHH-------HHHHhcChhHHHHHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 67777777776643 2334344444443 222234588999999999999999999999999999888776
No 139
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.03 E-value=2.7e+02 Score=26.96 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHH
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIH 635 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~ 635 (1061)
++-+...+.-=+.++..|-.-+.+.+|.|+..|..++-.+++.|+..|...- -...|++++...+..- .+..-+.
T Consensus 25 cD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev--ask~Fl~eL~kl~~~~---~~~~Vk~ 99 (144)
T cd03568 25 CDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV--ASRDFTQELKKLINDR---VHPTVKE 99 (144)
T ss_pred HHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH--hhHHHHHHHHHHhccc---CCHHHHH
Q ss_pred HHHHHHhhhhccCCCHHHHHHHHHHHhhchHHH
Q 036770 636 TFYESVGHMIQAESDVQKREEYLQRLMLLPNQK 668 (1061)
Q Consensus 636 ~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~ 668 (1061)
++.+-+.....+.+++..- .++..+...+...
T Consensus 100 kil~li~~W~~~f~~~~~l-~~i~~~y~~L~~~ 131 (144)
T cd03568 100 KLREVVKQWADEFKNDPSL-SLMSDLYKKLKNE 131 (144)
T ss_pred HHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHc
No 140
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=22.46 E-value=1.1e+03 Score=26.19 Aligned_cols=114 Identities=13% Similarity=0.208 Sum_probs=71.8
Q ss_pred CCCCcchHHHHHHHHHHHHhhhccC-CCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChH
Q 036770 780 NVPDARESEVLSLFATIINKYKGAM-IDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQ 858 (1061)
Q Consensus 780 ~~~~~r~~~~L~l~~~li~~~~~~~-~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~ 858 (1061)
..|..-|-..|.+...+...+|.+- ...++ ......++++.. ....+|-.|++++....-.....+ ..
T Consensus 66 ~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~----i~~~GLfpl~~~---asi~Vkp~lL~i~e~~~lpL~~~L----~p 134 (307)
T PF04118_consen 66 ALPSGVHQKALEVYEYIFERIGPDGLAQDLP----IYSPGLFPLFSY---ASIQVKPQLLDIYEKYYLPLGPAL----RP 134 (307)
T ss_pred CCChHHHHHHHHHHHHHHHhcCHHHHHhhcH----HHHHHHHHHHHH---HHHhhHHHHHHHHHHHhcCccHHH----HH
Confidence 3455556678999999998888742 22221 111122232221 123567778777776543222211 13
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 036770 859 QLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFV 908 (1061)
Q Consensus 859 ~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~ 908 (1061)
.++.++-++.-|+..+..+..+.+++.+..+-+.++.+ .||+....
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~----~F~~~lwl 180 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK----YFWQCLWL 180 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh----HHHHHHHH
Confidence 67889999999999999999999999888887666533 56666655
No 141
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=21.97 E-value=1.1e+03 Score=26.05 Aligned_cols=192 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHhcCcc--cHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHH
Q 036770 39 QILRDLQNNPD--MWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERL 116 (1061)
Q Consensus 39 ~~L~~fq~s~~--aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~ 116 (1061)
+.+..+.+.++ .|.....++.++ +..++.-|+.+|-..+...=..-.....+.+ ..+++++.+..+.+. .-
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l-~~ll~~L~~~l~~~~-----~~ 165 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEAL-PKLLQWLSSQLSSSD-----SE 165 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHHH-HHHHHHHH-TT-HHH-----H-
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHHH-HHHHHHHHHhhcCCC-----cc
Q ss_pred HHHHHHHHHHHHHHh------hcCCccchhHHHHH-----HHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHH
Q 036770 117 YVNKLNIILVQILKH------EWPARWRSFIPDLV-----AAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKEL 185 (1061)
Q Consensus 117 v~~kl~~~la~i~~~------~~p~~Wp~~i~~l~-----~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l 185 (1061)
+..-..++++.+++. .|-...-..+.+++ ...+.+.+..-..+-++=.| +| ..++
T Consensus 166 ~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL-----SF---------~~~~ 231 (312)
T PF03224_consen 166 LQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL-----SF---------EPEI 231 (312)
T ss_dssp --HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-----TT---------SHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH-----hc---------CHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc------hhhHHHHH-hhCCCccchHH
Q 036770 186 KQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE------SPLLETLL-KFFPMPSYRNL 253 (1061)
Q Consensus 186 ~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~------~~ll~~l~-~~L~~~~~~~~ 253 (1061)
-..|.+.. ++..+..++..+..+.+++-++.++...++-.+-+.+.. .++++.+- +-.+|+++.+.
T Consensus 232 ~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 232 AEELNKKY--LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHTTS--HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHhccc--hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
No 142
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=21.43 E-value=1.1e+03 Score=26.03 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.1
Q ss_pred CChHhHHHHHHHHHHHHhhch-----------hHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 036770 829 DYPEHRLKFFSLLRAIATHCF-----------PALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLE 888 (1061)
Q Consensus 829 ~~Pd~~~~~f~ll~~i~~~~~-----------~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~ 888 (1061)
..|+.|...+.++.+-..... ..++ + ..-..++.++..++..++.=|.+..+++|..
T Consensus 184 ~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 184 TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCL--G-PDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred cCcchhHHHHHHHHHhCCcccccccccchHHHHHhc--C-CCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 679999999888877554422 1111 1 1235677777777777776666666665543
No 143
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.39 E-value=9.7e+02 Score=25.24 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCc-ccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH
Q 036770 27 GTGSKEERTAADQILRDLQNNP-DMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV 102 (1061)
Q Consensus 27 ~~~~~~~r~~A~~~L~~fq~s~-~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~ 102 (1061)
...+++.+...-+.|-++-.+. ..-..+.+.|. .......++++...+-...+.+.... ..|+..+.....
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----~~L~~~L~~~~~ 85 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----PFLQPLLLLLIL 85 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----HHHHHHHHHHHh
Confidence 3447777777888888887777 66666666553 34455667888888877666543322 456666665444
Q ss_pred HhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHc-cC-ChhHHHHHHHHHHHHHH
Q 036770 103 QLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAA-KT-SETICENCMAILKLLSE 167 (1061)
Q Consensus 103 ~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~-~~-~~~~~~~~L~iL~~l~E 167 (1061)
+.......-....-..-..+..+..+.... |+.|++++.-+...+ +. ++...-++++.+..|++
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSR-PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 421111000001111112234454554444 889999999999988 44 34566778999998885
No 144
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.71 E-value=1.5e+03 Score=28.48 Aligned_cols=179 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred HccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc
Q 036770 58 LQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW 137 (1061)
Q Consensus 58 L~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W 137 (1061)
|-.|.|+-|-.-++|.+ |+.-|..+-..|-..|+..+.. ++-++.-.-+.++.|..+. |.-+
T Consensus 295 Ll~S~n~sVVmA~aql~-------y~lAP~~~~~~i~kaLvrLLrs----------~~~vqyvvL~nIa~~s~~~-~~lF 356 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLF-------YHLAPKNQVTKIAKALVRLLRS----------NREVQYVVLQNIATISIKR-PTLF 356 (968)
T ss_pred HHhcCCcHHHHHHHhHH-------HhhCCHHHHHHHHHHHHHHHhc----------CCcchhhhHHHHHHHHhcc-hhhh
Q ss_pred chhHHHHHHHccCChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 036770 138 RSFIPDLVAAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATL 217 (1061)
Q Consensus 138 p~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L 217 (1061)
...+..+.-..+-+...+..-|++|+.|..|- +...|+.=+...+..+.. +++..+.
T Consensus 357 ~P~lKsFfv~ssDp~~vk~lKleiLs~La~es----------------------ni~~ILrE~q~YI~s~d~-~faa~aV 413 (968)
T KOG1060|consen 357 EPHLKSFFVRSSDPTQVKILKLEILSNLANES----------------------NISEILRELQTYIKSSDR-SFAAAAV 413 (968)
T ss_pred hhhhhceEeecCCHHHHHHHHHHHHHHHhhhc----------------------cHHHHHHHHHHHHhcCch-hHHHHHH
Q ss_pred HHHHhcccccCcchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHH
Q 036770 218 STLHAFLSWIPLGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVF 281 (1061)
Q Consensus 218 ~~l~~~l~wi~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~ 281 (1061)
++++.+-+-+- -+.+.-++.+..++. +..+-..|+-.+-.++.+++.. +.+.+.+++...
T Consensus 414 ~AiGrCA~~~~---sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-h~~ii~~La~ll 475 (968)
T KOG1060|consen 414 KAIGRCASRIG---SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-HLEILFQLARLL 475 (968)
T ss_pred HHHHHHHHhhC---chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-HHHHHHHHHHHh
No 145
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.33 E-value=1e+02 Score=29.49 Aligned_cols=69 Identities=7% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHH
Q 036770 521 LVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTF 592 (1061)
Q Consensus 521 l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f 592 (1061)
.+.+++.+.+..+...+. .........+.+++.|.+|..-..-.-..+++.++..++. +.+++.|++++
T Consensus 80 ~~~i~~~l~~~l~~~~~~-~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSE-ANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHC-CHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 444555444444332111 1123333366688888888765443334477888887754 45688888764
Done!