Query 036770
Match_columns 1061
No_of_seqs 304 out of 1401
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 08:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 3E-167 9E-172 1566.3 108.5 1038 3-1060 15-1073(1073)
2 4hat_C Exportin-1; heat repeat 100.0 3E-153 1E-157 1451.8 108.3 998 2-1034 2-1023(1023)
3 3m1i_C Exportin-1; heat repeat 100.0 1E-121 4E-126 1193.0 107.7 1020 2-1056 2-1049(1049)
4 3ibv_A Exportin-T; karyopherin 100.0 5.2E-84 1.8E-88 819.3 67.5 897 11-1017 1-977 (980)
5 2x19_B Importin-13; nuclear tr 100.0 2.3E-81 7.9E-86 812.8 75.0 886 13-1022 21-958 (963)
6 2x1g_F Cadmus; transport prote 100.0 1.8E-74 6.2E-79 747.8 69.7 886 12-1020 3-968 (971)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.4E-55 4.9E-60 574.0 74.4 906 14-1018 9-1160(1204)
8 1w9c_A CRM1 protein, exportin 100.0 4.6E-59 1.6E-63 496.6 32.8 304 712-1020 2-321 (321)
9 4fdd_A Transportin-1; heat rep 100.0 6.7E-37 2.3E-41 390.5 58.5 718 14-939 11-742 (852)
10 2bpt_A Importin beta-1 subunit 100.0 3.6E-32 1.2E-36 348.1 64.3 740 13-920 1-789 (861)
11 1wa5_C Importin alpha RE-expor 100.0 3.7E-31 1.3E-35 340.9 66.2 707 14-846 3-791 (960)
12 1qgr_A Protein (importin beta 100.0 2.6E-27 8.9E-32 303.6 61.0 716 18-894 3-777 (876)
13 1ibr_B P95, importin beta-1 su 99.9 1.5E-21 5.2E-26 230.5 29.5 432 18-577 3-460 (462)
14 1u6g_C TIP120 protein, CAND1; 99.5 4.8E-10 1.6E-14 148.4 49.4 659 16-893 6-723 (1230)
15 1qgr_A Protein (importin beta 99.3 6.4E-09 2.2E-13 132.7 45.1 356 492-894 339-725 (876)
16 4fdd_A Transportin-1; heat rep 99.3 8.2E-08 2.8E-12 121.9 53.4 354 493-941 333-701 (852)
17 2bpt_A Importin beta-1 subunit 99.2 8.3E-06 2.8E-10 103.5 61.6 371 493-919 343-733 (861)
18 1b3u_A Protein (protein phosph 98.8 9.1E-06 3.1E-10 98.1 36.4 139 493-650 414-552 (588)
19 1b3u_A Protein (protein phosph 98.7 2.4E-05 8.3E-10 94.4 38.5 489 17-645 87-586 (588)
20 1u6g_C TIP120 protein, CAND1; 98.6 0.00041 1.4E-08 91.6 47.0 659 61-893 445-1134(1230)
21 2jdq_A Importin alpha-1 subuni 97.7 0.022 7.5E-07 65.6 30.6 366 135-601 13-394 (450)
22 2vgl_B AP-2 complex subunit be 97.6 0.059 2E-06 64.6 34.0 126 26-168 58-190 (591)
23 2x1g_F Cadmus; transport prote 97.6 0.37 1.3E-05 61.5 47.2 313 564-920 455-789 (971)
24 1wa5_C Importin alpha RE-expor 97.6 0.087 3E-06 67.2 37.1 156 495-668 472-649 (960)
25 2x19_B Importin-13; nuclear tr 97.6 0.014 4.9E-07 74.7 29.2 332 494-872 502-874 (963)
26 2jdq_A Importin alpha-1 subuni 97.5 0.03 1E-06 64.4 29.3 310 197-598 22-348 (450)
27 1wa5_B Importin alpha subunit; 97.5 0.019 6.5E-07 68.0 27.3 310 198-599 90-414 (530)
28 4b8j_A Importin subunit alpha- 97.3 0.052 1.8E-06 64.1 28.5 341 207-648 85-445 (528)
29 2qk1_A Protein STU2; STU2P, XM 97.2 0.0016 5.4E-08 68.8 11.4 154 494-661 74-234 (249)
30 1ibr_B P95, importin beta-1 su 97.2 0.02 6.7E-07 66.2 21.5 142 494-646 143-288 (462)
31 1wa5_B Importin alpha subunit; 97.1 0.11 3.8E-06 61.3 27.9 363 136-601 84-461 (530)
32 2vgl_B AP-2 complex subunit be 97.0 0.11 3.9E-06 62.1 26.9 165 463-644 337-530 (591)
33 2qk1_A Protein STU2; STU2P, XM 96.9 0.0089 3.1E-07 62.9 14.1 196 493-715 28-232 (249)
34 4b8j_A Importin subunit alpha- 96.8 0.26 9E-06 58.0 27.6 356 140-601 75-447 (528)
35 1w63_A Adapter-related protein 96.7 1.8 6.1E-05 51.9 42.1 175 20-225 74-263 (618)
36 4hat_C Exportin-1; heat repeat 96.7 0.2 6.9E-06 63.6 26.0 155 499-668 518-696 (1023)
37 2qk2_A LP04448P; mini spindles 96.6 0.015 5.3E-07 60.8 13.2 155 493-667 27-183 (242)
38 3m1i_C Exportin-1; heat repeat 96.6 0.36 1.2E-05 62.2 28.5 93 500-599 519-620 (1049)
39 3tpo_A Importin subunit alpha- 96.6 0.84 2.9E-05 53.6 29.7 101 493-600 305-409 (529)
40 3ul1_B Importin subunit alpha- 96.4 1.4 4.9E-05 51.3 29.9 137 494-647 287-431 (510)
41 3ibv_A Exportin-T; karyopherin 95.8 0.33 1.1E-05 61.5 21.3 98 789-895 463-570 (980)
42 3tpo_A Importin subunit alpha- 95.4 4.2 0.00014 47.5 27.7 69 196-264 120-192 (529)
43 2qk2_A LP04448P; mini spindles 95.3 0.055 1.9E-06 56.5 9.7 139 494-650 70-209 (242)
44 3ul1_B Importin subunit alpha- 95.2 5.6 0.00019 46.2 27.8 121 127-264 47-173 (510)
45 2z6g_A B-catenin; FULL-length, 95.1 9 0.00031 47.1 39.1 219 18-264 152-390 (780)
46 4hxt_A De novo protein OR329; 95.0 1.1 3.9E-05 46.1 19.1 221 17-266 3-244 (252)
47 3gjx_A Exportin-1; transport, 94.9 9.7 0.00033 48.2 30.2 158 547-728 498-670 (1073)
48 4db6_A Armadillo repeat protei 94.8 0.26 8.8E-06 49.7 13.1 139 493-647 24-168 (210)
49 4db6_A Armadillo repeat protei 94.8 0.43 1.5E-05 48.0 14.8 99 494-598 67-168 (210)
50 1xqr_A HSPBP1 protein; armadil 94.8 0.81 2.8E-05 49.1 17.5 139 494-647 95-239 (296)
51 2z6h_A Catenin beta-1, beta-ca 94.3 12 0.00042 44.7 40.2 221 16-264 14-254 (644)
52 4hxt_A De novo protein OR329; 93.6 1.6 5.5E-05 44.9 16.6 138 494-647 57-200 (252)
53 4db8_A Armadillo-repeat protei 93.3 0.65 2.2E-05 48.2 12.9 99 493-597 108-209 (252)
54 2vgl_A Adaptor protein complex 92.9 19 0.00066 42.8 42.0 173 18-224 76-269 (621)
55 4db8_A Armadillo-repeat protei 92.7 1.6 5.3E-05 45.2 14.8 138 494-647 67-210 (252)
56 2db0_A 253AA long hypothetical 92.4 6 0.00021 38.2 16.3 121 501-647 127-247 (253)
57 1oyz_A Hypothetical protein YI 92.0 14 0.00046 38.7 22.8 216 18-263 25-250 (280)
58 2z6g_A B-catenin; FULL-length, 90.9 36 0.0012 41.7 34.8 110 139-264 150-264 (780)
59 3ltj_A Alpharep-4; protein eng 90.1 15 0.00052 36.0 19.2 187 10-262 8-197 (201)
60 1jdh_A Beta-catenin; beta-cate 88.5 40 0.0014 38.7 38.6 221 15-263 16-256 (529)
61 1xqr_A HSPBP1 protein; armadil 86.2 2.9 0.0001 44.7 10.4 99 496-600 140-241 (296)
62 1w9c_A CRM1 protein, exportin 84.9 11 0.00039 40.1 13.9 124 235-372 72-199 (321)
63 3ltj_A Alpharep-4; protein eng 82.9 5.8 0.0002 39.2 10.5 23 573-595 143-165 (201)
64 3b2a_A TON_1937, putative unch 81.9 47 0.0016 33.6 21.4 213 11-267 5-222 (265)
65 2vgl_A Adaptor protein complex 77.8 17 0.00058 43.3 13.8 143 479-646 111-270 (621)
66 2iw3_A Elongation factor 3A; a 76.3 1.5E+02 0.005 37.0 21.6 219 15-263 13-237 (986)
67 3ltm_A Alpha-REP4; protein eng 75.7 6.5 0.00022 39.2 8.1 103 468-601 105-207 (211)
68 3ltm_A Alpha-REP4; protein eng 75.0 65 0.0022 31.5 18.3 186 15-264 18-204 (211)
69 1te4_A Conserved protein MTH18 74.3 4.5 0.00015 37.0 5.9 77 493-594 54-130 (131)
70 1oyz_A Hypothetical protein YI 73.3 23 0.0008 36.8 12.2 121 493-645 35-156 (280)
71 1w63_A Adapter-related protein 69.5 1.8E+02 0.0061 34.2 39.0 52 545-601 124-175 (618)
72 3nmw_A APC variant protein; AR 65.9 45 0.0015 36.4 12.6 107 495-604 46-167 (354)
73 2iw3_A Elongation factor 3A; a 64.6 90 0.0031 38.8 16.1 159 499-675 70-234 (986)
74 3now_A UNC-45 protein, SD10334 63.7 27 0.00093 42.6 11.1 144 501-659 601-748 (810)
75 2of3_A ZYG-9; multifunctional 63.4 1.4E+02 0.0048 30.8 21.0 173 53-264 51-237 (266)
76 3b2a_A TON_1937, putative unch 62.9 1.2E+02 0.0042 30.6 13.5 125 119-266 51-182 (265)
77 1te4_A Conserved protein MTH18 55.7 46 0.0016 29.9 9.0 78 493-596 24-101 (131)
78 3nmz_A APC variant protein; pr 52.2 59 0.002 36.8 10.8 95 500-597 167-272 (458)
79 1sz9_A PCF11 protein; RNA poly 51.9 30 0.001 32.2 6.9 55 540-602 23-77 (144)
80 3nmw_A APC variant protein; AR 50.8 1.3E+02 0.0045 32.6 13.0 102 494-597 184-292 (354)
81 1vsy_4 Proteasome activator BL 49.7 4.2E+02 0.014 32.1 19.1 293 414-726 297-667 (799)
82 4flb_A Regulation of nuclear P 45.4 70 0.0024 29.0 8.3 49 556-604 28-76 (132)
83 3oc3_A Helicase MOT1, MOT1; re 45.2 36 0.0012 39.0 7.1 120 496-646 243-365 (800)
84 1jdh_A Beta-catenin; beta-cate 39.6 4.5E+02 0.015 29.5 22.2 185 53-263 189-385 (529)
85 3nmz_A APC variant protein; pr 39.5 2.3E+02 0.008 31.8 13.2 102 494-597 300-408 (458)
86 2z6h_A Catenin beta-1, beta-ca 38.4 5.4E+02 0.018 30.0 23.8 187 51-263 184-382 (644)
87 4ffb_C Protein STU2; tubulin f 35.6 1.4E+02 0.0047 30.9 9.9 72 564-648 98-170 (278)
88 3l6x_A Catenin delta-1; cateni 33.9 4.9E+02 0.017 30.2 15.0 31 568-598 355-385 (584)
89 1xm9_A Plakophilin 1; armadill 30.2 1E+02 0.0036 34.6 8.4 100 494-598 15-117 (457)
90 4ffb_C Protein STU2; tubulin f 29.1 3.7E+02 0.013 27.4 12.0 78 567-649 138-215 (278)
91 1juq_A ADP-ribosylation factor 28.4 2E+02 0.0069 27.4 8.7 39 567-605 49-87 (171)
92 3g2s_A C-terminal fragment of 26.6 1.8E+02 0.0063 27.0 7.8 51 569-621 49-99 (149)
93 3l9t_A Putative uncharacterize 24.8 5.5E+02 0.019 25.8 13.6 67 13-79 67-133 (240)
94 1l6x_B Minimized B-domain of p 24.5 58 0.002 21.6 2.6 18 978-995 14-31 (34)
95 1mhq_A ADP-ribosylation factor 23.7 2.8E+02 0.0095 25.7 8.5 38 568-605 38-75 (148)
96 3d9j_A RNA-binding protein 16; 23.6 2.7E+02 0.0091 25.7 8.3 49 556-604 30-78 (145)
97 3grl_A General vesicular trans 23.2 5.4E+02 0.018 30.1 12.4 112 11-132 72-197 (651)
98 3l6x_A Catenin delta-1; cateni 22.6 2.8E+02 0.0096 32.2 10.1 113 135-263 43-163 (584)
99 1mhq_A ADP-ribosylation factor 21.1 4.9E+02 0.017 24.0 10.2 47 34-80 19-68 (148)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=2.6e-167 Score=1566.31 Aligned_cols=1038 Identities=51% Similarity=0.894 Sum_probs=952.7
Q ss_pred hHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhccc
Q 036770 3 AEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRW 82 (1061)
Q Consensus 3 ~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w 82 (1061)
|+.||||++++|++.+++++.++|+| ++++|++|+++|++||++|++|..|..+|..++++++||||+++|+++|+++|
T Consensus 15 ~~~~ld~~~~~Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 15 ARQLLDFSQKLDINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp CCCCCSSSCCCSHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHhhCcCCCCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 88999999999999999999999999 56699999999999999999999999999888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHH
Q 036770 83 NALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAIL 162 (1061)
Q Consensus 83 ~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL 162 (1061)
+.+|++++..||+++++++.+.+++++..+.++.+++|+|+++|.|++++||+.||+|++++++.+++++..++++|++|
T Consensus 94 ~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~~~~~~~~L~IL 173 (1073)
T 3gjx_A 94 KILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTSESLCQNNMVIL 173 (1073)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999876665434445677899999999999999999999999999999988888999999999
Q ss_pred HHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH-
Q 036770 163 KLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL- 241 (1061)
Q Consensus 163 ~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l- 241 (1061)
+.|+|||+++++.++++.|++++++.|+..++.|+++|..+|++..+++++..+|+|+++|++|+|+++++++++++++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~ 253 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLI 253 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHH
Confidence 9999999987667788999999999999999999999999999888899999999999999999999999999999988
Q ss_pred HhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHH
Q 036770 242 LKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFF 321 (1061)
Q Consensus 242 ~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~ 321 (1061)
+.+|+++++|++|++||++|++++.+ .|++.+..+|..++..+..++|...++.++|...+++|++|++++|+++++++
T Consensus 254 ~~~L~~~~~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~ 332 (1073)
T 3gjx_A 254 YKFLNVPMFRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFL 332 (1073)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 69999999999999999999998643 57888999999999999999999889999998778889999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhh
Q 036770 322 KFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDG 401 (1061)
Q Consensus 322 ~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 401 (1061)
++|..++++.|+..+.+..++++|+.|+.++|.|++++||+||+.+.+++|++.... . + ..|+++ .+.+.+
T Consensus 333 e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~-~-~-~~~~~~------~~~~~~ 403 (1073)
T 3gjx_A 333 KEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFS-T-S-ASPLLS------GSQHFD 403 (1073)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSC-C-C-CSSCTT------SSCCSC
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccc-c-c-cccccc------cccccc
Confidence 999999998776677788899999999999999999999999999999999875210 0 0 012110 011234
Q ss_pred hhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHH
Q 036770 402 IGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQML 481 (1061)
Q Consensus 402 ~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~ 481 (1061)
| +.++..|++++++|+.++++||+||+|+++.|+|+||.+|++++|++++.+|+.||++|.++++++++++..+|+
T Consensus 404 ~----~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~ 479 (1073)
T 3gjx_A 404 I----PPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMT 479 (1073)
T ss_dssp S----CHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred c----hhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4 678899999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH
Q 036770 482 KKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA 561 (1061)
Q Consensus 482 ~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~ 561 (1061)
++|.++++++.|+|+.+|++|||+|+|||++.++.|+++++++|+.|+++|++++|+++|+++++++||++|||++|++.
T Consensus 480 ~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~ 559 (1073)
T 3gjx_A 480 KKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA 559 (1073)
T ss_dssp HHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh
Confidence 99998887778999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHH
Q 036770 562 HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESV 641 (1061)
Q Consensus 562 ~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eai 641 (1061)
||+||++++++|++||++++++|++|||+||.+||++|+++|+.+++|+..||+++|++.+..+...+++++...+|||+
T Consensus 560 h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav 639 (1073)
T 3gjx_A 560 HWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAV 639 (1073)
T ss_dssp CHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHH
Q 036770 642 GHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDM 721 (1061)
Q Consensus 642 g~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~l 721 (1061)
|++++++|++..+..+++.||.|+++.|++++++++++++.+.|++.++++.++++|+.++|+++|++|.|+++.+|+++
T Consensus 640 ~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~ 719 (1073)
T 3gjx_A 640 GYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDM 719 (1073)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHH
Confidence 99999999988788999999999999999999988888888899998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------hcCCCCcch
Q 036770 722 LNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG---------------KQNVPDARE 786 (1061)
Q Consensus 722 l~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~---------------~~~~~~~r~ 786 (1061)
+++|+.+++.|...++..|..+.+++.+|.+|++|++|++++++|+++.++.+.+. +.+.|.+|+
T Consensus 720 l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~ 799 (1073)
T 3gjx_A 720 LNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAARE 799 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCC
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999999999887754332 238899999
Q ss_pred HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHH
Q 036770 787 SEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDS 866 (1061)
Q Consensus 787 ~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~ 866 (1061)
|+||++++++|+++|..+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..|+++|+++|+.+++|
T Consensus 800 ~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~ 879 (1073)
T 3gjx_A 800 PEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDS 879 (1073)
T ss_dssp THHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCC
Q 036770 867 IIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGL 945 (1061)
Q Consensus 867 i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~ 945 (1061)
++||++|++|+++++||+++.++++++.+ ++++++||++||..++.++|.|+||+.|++||+.|+.+|++|+.+++.|+
T Consensus 880 i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~ 959 (1073)
T 3gjx_A 880 IIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGK 959 (1073)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999875 46899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhcccCCChh
Q 036770 946 LTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSAQDNKD 1025 (1061)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~~~~~~ 1025 (1061)
|..|++... + ..|++++++|+.++|.++||+++++|+..|++++|+.++|..+||+++|||++++|||+|+|++|
T Consensus 960 i~~~l~~~~-~----~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~~~~~~ 1034 (1073)
T 3gjx_A 960 ISTPLNPGN-P----VNNQMFIQDYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSD 1034 (1073)
T ss_dssp CSCSSSCTT-T----TCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCTTTCCT
T ss_pred ccccccccC-C----CccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 999998421 1 25899999999999999999999999999999999999999999999999999999999988889
Q ss_pred hhHHHHHHH----HHHHHHhhccCCCcCCCCCCChhhhc
Q 036770 1026 LYAEEAAAQ----RERERQRMLSIPGLIAPNEIQDEMVD 1060 (1061)
Q Consensus 1026 l~~~e~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 1060 (1061)
||+||||++ ++++|+++.+||||++|+|++|||.|
T Consensus 1035 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1073 (1073)
T 3gjx_A 1035 LFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1073 (1073)
T ss_dssp TCTTHHHHHHHHHHHHHHHHSCC----------------
T ss_pred HhHHHHHHHHHHHHHHHHhHHhcCCCCCCccccChhhcC
Confidence 999999999 66777888999999999999998865
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=3e-153 Score=1451.76 Aligned_cols=998 Identities=43% Similarity=0.792 Sum_probs=938.9
Q ss_pred chHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcc
Q 036770 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYR 81 (1061)
Q Consensus 2 ~~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~ 81 (1061)
.||.||||++|+|++.+++||.++|+|+++ .|++|+++|++||++|++|..|..+|..+.++++||||+++|+++|+++
T Consensus 2 ~~~~~l~~~~~~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~ 80 (1023)
T 4hat_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1023)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhHhhCCCCCCCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 599999999999999999999999999765 9999999999999999999999999988889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHH
Q 036770 82 WNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAI 161 (1061)
Q Consensus 82 w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~i 161 (1061)
|+.+|++++..||+++++++.+.+++++.++.+++++||+|.+++.|++++||+.||++++++++.+++++..++++|.+
T Consensus 81 W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~i 160 (1023)
T 4hat_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIV 160 (1023)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999998767666777899999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l 241 (1061)
|+.|+|||++++++++++.|++.++++|+..++.|+++|.++|+.+.+++++..+|+|+++|++|+|++.++++++++.+
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l 240 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHH
Confidence 99999999998778899999999999999999999999999999888889999999999999999999999999999999
Q ss_pred H-hhCCCccchHHHHHHHHHHhcCcC-Cc--chHHHHHHHHHHHHHHH-HhhCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 242 L-KFFPMPSYRNLTLQCLTEVGALNF-GD--FYNVQYVNMYNVFMVQL-QTILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 242 ~-~~L~~~~~~~~a~~cL~ei~~~~~-~~--~~~~~~~~~f~~~l~~l-~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
+ .+|++|++|++|++||++|+++++ ++ .+++.+..+|..++..+ ..++|...++.+.|...+++|+++++++|++
T Consensus 241 ~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l 320 (1023)
T 4hat_C 241 STKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1023)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHH
Confidence 9 999999999999999999999765 33 36778889999999988 7899999999999987777899999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCc
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLP 396 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 396 (1061)
++++|++|..++++.+++.+.+..++++|+.++.++|.|++++|++||+.+++++|.+
T Consensus 321 ~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e---------------------- 378 (1023)
T 4hat_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE---------------------- 378 (1023)
T ss_dssp HHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc----------------------
Confidence 9999999999998877667888788999999999999999999999999999987631
Q ss_pred hhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhH
Q 036770 397 SVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDT 476 (1061)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~ 476 (1061)
+.++..|+|++.+|+.++++||+||+|+.++++|+|+.+|++.+|.++...|+.+|++|.+++++++.++
T Consensus 379 ----------~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~ 448 (1023)
T 4hat_C 379 ----------PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1023)
T ss_dssp ----------TTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHH
Confidence 1245679999999999999999999999888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 477 ~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
++++.+++.+++++++++|+.+||+|||+|+|+|++.++.++++++++++.|+++|++++|+++++++++++||++|||+
T Consensus 449 ~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 99999999988877678999999999999999999998888999999999999999998899999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHT 636 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~ 636 (1061)
+|++.||++|++++++|+++|++++|+|+++||++|.+||++|+.+++..++++..||+++|++.+..+...++.+++..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999877889999999999999999999999999999
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 637 FYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 637 l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
+|||+|.+|+++|+.+.+.++++.||.|+++.|++++++++++|..+.|++.++++.++++|++++|+++|++|.|+++.
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~ 688 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 99999999999999888899999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhh---------------hcCC
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIG---------------KQNV 781 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~---------------~~~~ 781 (1061)
+|++++++|+.+++.|+..++..|..+.++|.+|.+|++|++|++++++|+.+.++.+.+. ..+.
T Consensus 689 i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987754332 2388
Q ss_pred CCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 782 PDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 782 ~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
|+.|+|+||++++++|+++|+.+.+.++.|++.+|+||++||++|+++|||||.+||+|+++++++||..++++|+++++
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~ 848 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFK 848 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA---SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLF 938 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~ 938 (1061)
.+++|++||++|+||+++++|++++.++++++.+ .+++++||++||..++.++|.|+||+.|++||+.|+.+|++|+
T Consensus 849 ~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~ 928 (1023)
T 4hat_C 849 LFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1023)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999874 4689999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhc
Q 036770 939 CLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 939 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
.+++.|+|++|+++..+.| .|..|.+++++|+.++|.++|||++++|+..|++++++.++|..+||+++|||++++|||
T Consensus 929 ~~~~~~~~~~~~~~~~~~~-~~~~n~~~~~~~~~~~l~~~fp~~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke~ 1007 (1023)
T 4hat_C 929 SLVYDNKISVPLYQEAEVP-QGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKEV 1007 (1023)
T ss_dssp HHHHTTCCCSCSSCTTSSC-TTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSS
T ss_pred HHHHcCCcccccCCccccC-CCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHhh
Confidence 9999999999999988777 577999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCh-hhhHHHHHHH
Q 036770 1019 SAQDNK-DLYAEEAAAQ 1034 (1061)
Q Consensus 1019 ~~~~~~-~l~~~e~~~~ 1034 (1061)
+| |++ |||+||||++
T Consensus 1008 ~~-~~~~~~~~~~~~~~ 1023 (1023)
T 4hat_C 1008 GG-DPTDYLFAEDKENA 1023 (1023)
T ss_dssp SC-CGGGGGCC------
T ss_pred cC-CChHHHhHHhhhcC
Confidence 99 888 6999999864
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=1.3e-121 Score=1192.97 Aligned_cols=1020 Identities=43% Similarity=0.785 Sum_probs=902.2
Q ss_pred chHhhhcCCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcc
Q 036770 2 AAEKLRDLSQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYR 81 (1061)
Q Consensus 2 ~~~~~l~~~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~ 81 (1061)
.|+.||||+.|+|+++++++++.+|+|+ ++.|++|+++|++|+++|++|..|..+|.++.++++|+||+++|+++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~p~-~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 2 AMEGILDFSNDLDIALLDQVVSTFYQGS-GVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp GGGGGGCTTSCCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred hhhHhcCCCCcccHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh
Confidence 4999999999999999999999999985 458999999999999999999999999988889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHH
Q 036770 82 WNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAI 161 (1061)
Q Consensus 82 w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~i 161 (1061)
|..+|+++|..||+++++++.+..++++.++.++.+++|++.+++.|++++||+.||++++++++.+++++..+++++.+
T Consensus 81 W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIV 160 (1049)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHH
Confidence 99999999999999999999987655544444579999999999999999999999999999999998777789999999
Q ss_pred HHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHH
Q 036770 162 LKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETL 241 (1061)
Q Consensus 162 L~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l 241 (1061)
|+.|+||+.++++++++..|++++++.++.+++.|+.++.++++...+++++..+|+|+.+|++|+|++.++++++++.+
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l 240 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELL 240 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHH
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHH
Confidence 99999999987667788899999999999999999999999999877788999999999999999999999999999999
Q ss_pred H-hhCCCccchHHHHHHHHHHhcCcCCcc---hHHHHHHHHHHHHHHHHh-hCCCCCChhhhhcCCCcchHHHHHHHHHH
Q 036770 242 L-KFFPMPSYRNLTLQCLTEVGALNFGDF---YNVQYVNMYNVFMVQLQT-ILPPTTNIPEAYAHGNSEEQAFIQNLALF 316 (1061)
Q Consensus 242 ~-~~L~~~~~~~~a~~cL~ei~~~~~~~~---~~~~~~~~f~~~l~~l~~-~l~~~~~l~~~~~~~~~~d~~~~~~l~~l 316 (1061)
+ .++.+++++..|++||++|+++++++. +.+++..+|..++..+.. ++|...++...|....++|.++++++|++
T Consensus 241 ~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~ 320 (1049)
T 3m1i_C 241 STKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMF 320 (1049)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHhCCCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHH
Confidence 9 677899999999999999999876543 456777888888888877 88887778777875667788999999999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCc
Q 036770 317 FTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLP 396 (1061)
Q Consensus 317 ~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 396 (1061)
++++++.+..++++++...+.+...+++++.++.++|++++..|++||+.+++++++ .
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~-~--------------------- 378 (1049)
T 3m1i_C 321 LTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFY-E--------------------- 378 (1049)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH-S---------------------
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh-c---------------------
Confidence 999999999988875545566667889999999999999999999999999987643 0
Q ss_pred hhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhH
Q 036770 397 SVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDT 476 (1061)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~ 476 (1061)
+..+..|++++.+|+.+++.+|.||+|..+.++|++|.||++++|.|++..|+.++++|.+++++.+.++
T Consensus 379 ----------~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~ 448 (1049)
T 3m1i_C 379 ----------PLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDT 448 (1049)
T ss_dssp ----------TTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHH
Confidence 1123457899999999999999999887656677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 477 EKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 477 ~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
...+.+.+.+.++++.++|+.+|++||++|+|++.+.+..++.+++++++.|+++|+...+++++++++++++|++|||+
T Consensus 449 l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~ 528 (1049)
T 3m1i_C 449 EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP 528 (1049)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 99999999888766678999999999999999999887767788999999999999876555688999988999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHT 636 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~ 636 (1061)
+|+..||++|++++++++++|++++++|+.+||++|.+||++|+.++...++++..||+++|++.+..+...++.++...
T Consensus 529 ~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~ 608 (1049)
T 3m1i_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1049)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999899999999999999999999998766778888999999999999988899999999
Q ss_pred HHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHH
Q 036770 637 FYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISV 716 (1061)
Q Consensus 637 l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~ 716 (1061)
+|||+|.++++.++.+.+..++..+|.|+.+.|++++++..++++...|++..+.+.++++|++++|+++|++|.|++..
T Consensus 609 ~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~ 688 (1049)
T 3m1i_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGH 688 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999997677789999999999999999998776666555677777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhh------------hhh---cCC
Q 036770 717 IFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQ------------IGK---QNV 781 (1061)
Q Consensus 717 i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~------------l~~---~~~ 781 (1061)
+|++++.+|+.++..+...+...|..+.+.|..+.++.+++.++++++.|++....++. +.. ...
T Consensus 689 i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~ 768 (1049)
T 3m1i_C 689 IYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998888877777877788999999999999999999999987753221 111 134
Q ss_pred CCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 782 PDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 782 ~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
+..|++.+|+++++++.++|..+.++++.++..+++++++|++++++++||+|++||+|+++++++||..++.+++..+.
T Consensus 769 ~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 848 (1049)
T 3m1i_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFK 848 (1049)
T ss_dssp GGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHH
Confidence 55677899999999999999988899999999999999999999999999999999999999999999999988888899
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHH
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA---SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLF 938 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~ 938 (1061)
.++++++||++|+++++.++|++++.+++++++. .+.++.||++||..++..+|.++||+.|+++|+.|+.+|++++
T Consensus 849 ~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 849 LFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864 3678999999999999999999999999999999999999999
Q ss_pred HHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhc
Q 036770 939 CLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 939 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
.+++.|+|+.|+|+++++| .+..|+.++.+||.++|.+.||+++++|+..|++++++.++|..+||+++||||+++|||
T Consensus 929 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 929 SLVYDNKISVPLYQEAEVP-QGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEV 1007 (1049)
T ss_dssp HHHHTTCCCSCSSCGGGSS-TTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTSS
T ss_pred HHHhcCcccccccCccccC-CCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHhhhhh
Confidence 9999999999999987655 345788999999999998899999999999999999999999999999999999999999
Q ss_pred ccCCChh-hhHHHHHHH----HHHHHHhhccCCCcCCCCCCCh
Q 036770 1019 SAQDNKD-LYAEEAAAQ----RERERQRMLSIPGLIAPNEIQD 1056 (1061)
Q Consensus 1019 ~~~~~~~-l~~~e~~~~----~~~~~~~~~~~~g~~~~~~~~~ 1056 (1061)
+| ||+| ||+||||++ ++++|++..+||||++|+|++|
T Consensus 1008 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1049 (1049)
T 3m1i_C 1008 GG-DPTDYLFAEDKENALMEQNRLEREKAAKIGGLLKPSELDD 1049 (1049)
T ss_dssp SC-CGGGGGGGGGTTTC--------------------------
T ss_pred cC-CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCC
Confidence 99 9998 999999877 3457888899999999999875
No 4
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=5.2e-84 Score=819.34 Aligned_cols=897 Identities=15% Similarity=0.205 Sum_probs=656.7
Q ss_pred CCCCHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHccCC--ChHHHHHHHHHHHHHHhcccCCCCH
Q 036770 11 QPMDVALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQNSK--NLNTKFFALQVLEGVIKYRWNALPV 87 (1061)
Q Consensus 11 ~~~di~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~--~~~~rffaa~~L~~~I~~~w~~l~~ 87 (1061)
.|+|++++.+|++..|+|+ |++.|++|++||++||++|++|..|..+|.++. ++++||||+++|+++|+ .+|+
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~ 76 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNN 76 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCT
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCCh
Confidence 3789999999998888876 899999999999999999999999999998764 79999999999999999 6999
Q ss_pred H----HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-h-hHHHHHHHH
Q 036770 88 E----QRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-E-TICENCMAI 161 (1061)
Q Consensus 88 e----~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~-~~~~~~L~i 161 (1061)
+ ++..||+++++++.+.+. ...+++|+||+|.+++.+++++||+.||+|++++++.++++ . ......|++
T Consensus 77 e~~~~~~~~lr~~ll~~l~~~~~----~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~Lri 152 (980)
T 3ibv_A 77 ESNLLELQMIRDSVWSYIKELSF----LDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKV 152 (980)
T ss_dssp TTSHHHHHHHHHHHHHHHHHCCS----TTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHH
Confidence 9 999999999999988421 12357899999999999999999999999999999998764 3 356677888
Q ss_pred HHHHHHHHhccC--cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhhc---CcHHHHHHHHHHHHhcccccCcchhcch
Q 036770 162 LKLLSEEVFDFS--RGEMTQQKIKELKQSLNSE-FQLIHELCLYVLSAS---QRTDLIRATLSTLHAFLSWIPLGYIFES 235 (1061)
Q Consensus 162 L~~l~EEv~~~~--~~~l~~~r~~~l~~~l~~~-~~~I~~~~~~~L~~~---~~~~l~~~~L~~l~~~l~wi~~~~i~~~ 235 (1061)
|..|+||+++.. +......|++++++.|+.+ ++.|++.|..+|.+. .+++++..+|+|+++|++|+|++.++++
T Consensus 153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~ 232 (980)
T 3ibv_A 153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNE 232 (980)
T ss_dssp HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCH
T ss_pred HHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcc
Confidence 888889998842 3445568899999999965 899999998888762 5678999999999999999999999999
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCC--CcchHHHHHHH
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHG--NSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~--~~~d~~~~~~l 313 (1061)
++++.++++|.++++|++|++||++|+++++.+.....+... +. + .+.+... .++|.++++++
T Consensus 233 ~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~----l~-L----------~~~~~~l~~~~~D~d~~~~l 297 (980)
T 3ibv_A 233 PCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNI----LN-L----------NLFFSKSQEQSTDPNFDEHV 297 (980)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH----HH-H----------HHHHCC-----CCHHHHHHH
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHHcCCChhhHHHHHHH----Hh-H----------HHHHHHHhcccccHHHHHHH
Confidence 999999999999999999999999999987754211112221 11 1 2222221 15788899999
Q ss_pred HHHHHHHHHHHHHHhccch---------hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036770 314 ALFFTSFFKFHIRVLESTQ---------ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVT 384 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~---------~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~ 384 (1061)
|++++++|+.++.. ++.+ ...+.+...+++++.++.+++++++..+++||+.+++.+-+....
T Consensus 298 a~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~------- 369 (980)
T 3ibv_A 298 AKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSS------- 369 (980)
T ss_dssp HHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhcccc-------
Confidence 99999999998777 6543 112444567899999999999999999999999998764321100
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccccc----CCchhHHhhhcchhhHHHHHH
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVED----ENGNIVRETMKDNDVLVQYKI 460 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~----d~~e~~~e~~~d~~~~~ly~~ 460 (1061)
......+++++.+|+.++++||+||++.. |++ |+.+.|++||++..
T Consensus 370 ----------------------~~~~~~~~~~l~~Ll~~li~k~~yp~d~~-~~~~~d~ed~~~F~e~Rk~l~------- 419 (980)
T 3ibv_A 370 ----------------------KELSASLKEFLKSLLEAIIKKMKYDESQE-WDDDPDSEEEAEFQEMRKKLK------- 419 (980)
T ss_dssp ----------------------CCCCHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCSSSSTHHHHHHHHHHHH-------
T ss_pred ----------------------ccccHHHHHHHHHHHHHHHHHccCCCccc-cccccchhHHHHHHHHHHHHH-------
Confidence 00123468999999999999999998754 433 45567888887654
Q ss_pred HHHHHHHHhcCCHHhHHH----HHHHHHHhhcc-CCccccchhhHHHHHHHhhhCCCChhH-----HhHHHHHHHHHHHH
Q 036770 461 MRETLIYLSHLDHEDTEK----QMLKKLSKQLS-GEDWTWNNLNTLCWAIGSISGSMMEEQ-----ENRFLVMVIRDLLN 530 (1061)
Q Consensus 461 ~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~-~~~~~w~~le~~~~algsis~~~~~~~-----e~~~l~~vi~~Ll~ 530 (1061)
..+..++.++++.+.. .+...+.+.+. +.+.+|+.+|+++|++|++++++.... ++..++++++.+..
T Consensus 420 --~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ 497 (980)
T 3ibv_A 420 --IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL 497 (980)
T ss_dssp --HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH
T ss_pred --HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH
Confidence 2233445556776666 44444433332 234689999999999999999876421 23456677776666
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHH--hhhcCChhHHHHHHHHHHHHHHHhhhccccccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFE--FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQV 608 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~--~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~ 608 (1061)
+..+....++++.++...++++|||++|+..||++|+++++.++. ++++++++|+.+||++|.++|+.|+.++.+
T Consensus 498 ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~--- 574 (980)
T 3ibv_A 498 VTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVN--- 574 (980)
T ss_dssp HHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSS---
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhh---
Confidence 655433334566777778999999999999999999999999999 999988999999999999999999999875
Q ss_pred CCCchHHHHHHHhHHHhhhc--C-------------------CcchHHHHHHHHhhhhccCCC-HHHHHHHHHHHhhchH
Q 036770 609 GENEPFVSELLSGLATTVAD--L-------------------EPHQIHTFYESVGHMIQAESD-VQKREEYLQRLMLLPN 666 (1061)
Q Consensus 609 ~e~~p~l~~il~~l~~~~~~--l-------------------~~~~~~~l~eaig~li~~~~~-~~~~~~~l~~Ll~~~~ 666 (1061)
|++.|++.+..+... . .++++.++|||+|.++++.+. ++.+..+++.++.|+.
T Consensus 575 -----~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~ 649 (980)
T 3ibv_A 575 -----YTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALI 649 (980)
T ss_dssp -----SHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 889999998876431 1 134689999999999998763 5677899999999999
Q ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCC-----
Q 036770 667 QKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGP----- 741 (1061)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~----- 741 (1061)
++|++.++...++ .+.. . ++++++.+++++++++...-.. .-| +..+|+...+.+...+...+.
T Consensus 650 ~~l~~~l~~~~~~----~~~~-~-~i~~~i~al~~lakgf~~~~~~----~~p-~~~~f~~~~~~il~~l~~~~~~~~ir 718 (980)
T 3ibv_A 650 GKANAALSSDLSA----LENI-I-SVYCSLMAIGNFAKGFPARGSE----EVA-WLASFNKASDEIFLILDRMGFNEDIR 718 (980)
T ss_dssp HHHHHHHTTSCC------CHH-H-HHHHHHHHHHHHHHTSCSCC-C----CCS-HHHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHhhcccC----ccHH-H-HHHHHHHHHHHHhccCCcccCC----CCc-HHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 9999988654322 1322 2 8899999999999988642100 001 333444444444444433322
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHH
Q 036770 742 FASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLE 821 (1061)
Q Consensus 742 ~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~ 821 (1061)
.+....+.|.+++++..+++++..+++.+ +. +.......++|.+++++|++||.++.+.+..++..+++.++.
T Consensus 719 ea~~~~~~r~i~~lg~~~~p~lp~~i~~l-----l~--~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~ 791 (980)
T 3ibv_A 719 GAVRFTSGRIINVVGPDMLPKVPQLISIL-----LN--SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFS 791 (980)
T ss_dssp HHHHHHHHHHTTTTHHHHTTTHHHHHHHH-----HH--HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHhHHHHHHHHHHHH-----Hh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334455677778888888888887755 31 333445689999999999999999888899999999999999
Q ss_pred hhhhc------cCCChHhHHHHHHHHHHHHhhchhHhhcCCh--HHHHHHHHHHH-HHhcCCChhHHHHHHHHHHHHHHh
Q 036770 822 MITKN------FEDYPEHRLKFFSLLRAIATHCFPALIRLSS--QQLKLVMDSII-WAFRHTERNIAETGLNLLLEMLKN 892 (1061)
Q Consensus 822 ~i~~~------~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~--~~~~~~~~~i~-~~~~~~~~~i~~~~l~~l~~l~~~ 892 (1061)
+++.. +++.++++++||.|+..++++....++..++ ..++.++.+++ .|..++++.+.|.|+.++.++++.
T Consensus 792 ~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~ 871 (980)
T 3ibv_A 792 SLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSL 871 (980)
T ss_dssp HTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99742 3456889999999999999976555554443 47888999988 567779999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHH
Q 036770 893 FQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTI 972 (1061)
Q Consensus 893 ~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 972 (1061)
|+++....+|-+..|. +++.+|+++.++..+....+...++.+++.+++. ++. +.+.+|+. ||.
T Consensus 872 ~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~------~~~--------~~g~~~~~-~l~ 935 (980)
T 3ibv_A 872 WGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKI------ILE--------KLGDIYKS-YLV 935 (980)
T ss_dssp -------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHH------HHH--------HHHHHHHH-HHH
T ss_pred HCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHH------HHH--------hcCHHHHH-HHH
Confidence 9865545556566666 9999999998887776666666788887776653 222 12343332 333
Q ss_pred HHhhccCCC--CCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhh
Q 036770 973 KLLGTSFPN--MTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKE 1017 (1061)
Q Consensus 973 ~~l~~~fp~--~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~ 1017 (1061)
...||+ ++++.+++|+++|.+ .|.|.||+++.+|+.++|.
T Consensus 936 ---~~~lp~~~~~~~~~~~~~~~l~~--~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 936 ---TVYFPTVNFPDVMASEYLQALSN--LDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp ---HTTTTC----CCHHHHHHHC------------------CHHHHC
T ss_pred ---HhcCCcCCCCHHHHHHHHHHHhc--cchhhHHHHHHHHHHHhhc
Confidence 346775 699999999999954 4899999999999999885
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=2.3e-81 Score=812.81 Aligned_cols=886 Identities=14% Similarity=0.221 Sum_probs=689.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHH
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDG 92 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~ 92 (1061)
.|++.++++++.+|+++|++.|++|+++|++||++|++|..|..+|..+.++++|+||+++|+++|+++|+.+|++++..
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 68999999999988777899999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC------ChhHHHHHHHHHHHHH
Q 036770 93 MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT------SETICENCMAILKLLS 166 (1061)
Q Consensus 93 lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~------~~~~~~~~L~iL~~l~ 166 (1061)
||+++++++.+..++ ++.|++|++.+++.|++++||+.||++++++++.+++ ++..++.++.+|+.++
T Consensus 101 ir~~ll~~l~~~~~~------~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 101 LKAQLFTQITRFASG------SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp HHHHHHHHHHHTTTS------CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC------CHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 999999999885422 3789999999999999999999999999999999876 5668999999999999
Q ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-HHHHHHHHHHHhcccccCcchhcchhhHHHHHhhC
Q 036770 167 EEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT-DLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFF 245 (1061)
Q Consensus 167 EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~-~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L 245 (1061)
||+++... +..||..+++.+...++.|+.++.++++...++ .+...+|+|+.+|+. ++......+++++.+++++
T Consensus 175 ee~~~~~~---~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 175 EEFQTSRL---PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHTTCCC------------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred HHHhcccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 99977532 667888999999989999999999999775443 588999999999887 5544334488999999999
Q ss_pred CCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 036770 246 PMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHI 325 (1061)
Q Consensus 246 ~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~ 325 (1061)
.++++++.|++|+++++++..++.+.+.+..++..++..... +...+. .+|.++++++|++++.+++.+.
T Consensus 251 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~---~~d~~~~~~~~~l~~~~~~~~~ 320 (963)
T 2x19_B 251 QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQ-------LRQAVQ---NGDMETSHGICRIAVALGENHS 320 (963)
T ss_dssp TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHH-------HHHHHH---TTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHH-------HHHHHH---CCCHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999654433444444444443332111 111221 2455889999999999999988
Q ss_pred HHhccchhhHHHHHHHHHHHHHhhcc-----ChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhh
Q 036770 326 RVLESTQENISALLMGLEYLINISYV-----DETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVD 400 (1061)
Q Consensus 326 ~ile~~~~~~~~~~~~l~~ll~~~~~-----~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 400 (1061)
..+.+.....+.+...+++|+.++.+ .|++++..|++||+.+++.+++. +. +
T Consensus 321 ~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~----~~-------------------~ 377 (963)
T 2x19_B 321 RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSF----EA-------------------E 377 (963)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTS----CH-------------------H
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhh----hh-------------------h
Confidence 76653211123334667899998876 36788999999999999854310 00 0
Q ss_pred hhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccc--cccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH
Q 036770 401 GIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLI--VEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK 478 (1061)
Q Consensus 401 ~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~--~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~ 478 (1061)
..+.....|++++.+|+.+++.+|.+|++... |++|+++.|+++++ .++++|..++++.+.++..
T Consensus 378 ----~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~---------~~~~~L~~~~~~~~~~~l~ 444 (963)
T 2x19_B 378 ----KQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRV---------DISDTLMYVYEMLGAELLS 444 (963)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHH---------HHHHHHHHHHHHHTHHHHH
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHH---------HHHHHHHHHHHHccHHHHH
Confidence 00234567889999999999999999987531 33344455655543 4567778888777777888
Q ss_pred HHHHHHHhhcc--CCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch
Q 036770 479 QMLKKLSKQLS--GEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 479 ~i~~~L~~~~~--~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
.+.+.+...++ +...+|+.+|+++|++|+|++.+.++ ++++++++++.+.++++. ++ .++..++|++|+|+
T Consensus 445 ~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~-~~~~l~~l~~~l~~l~~~-----~~-~vr~~~~~~l~~~~ 517 (963)
T 2x19_B 445 NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVN-YSDVVPGLIGLIPRISIS-----NV-QLADTVMFTIGALS 517 (963)
T ss_dssp HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSS-CCSHHHHHHHHGGGSCCC-----SH-HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCch-hhHHHHHHHHHHHhCCCC-----cH-HHHHHHHHHHHHHH
Confidence 88887776652 12358999999999999999987653 467888999977676642 33 36677999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--cCCcchH
Q 036770 557 RFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--DLEPHQI 634 (1061)
Q Consensus 557 ~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~l~~~~~ 634 (1061)
+|+..|++++++++++++.++++ ++|+.+||++|.++|++|+.++.+ |++++++.+..+.. .++.+.+
T Consensus 518 ~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p--------~~~~il~~l~~~l~~~~~~~~~~ 587 (963)
T 2x19_B 518 EWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPP--------YAANIVAVSQDVLMKQIHKTSQC 587 (963)
T ss_dssp HHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTT--------THHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHhccCCCChHHH
Confidence 99999999999999999999975 789999999999999999998874 89999998887765 4678889
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhCh------
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGT------ 708 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~------ 708 (1061)
..+|||+|.++++.+ .+.+..+++.+|.|+...|+++.++ + .+++....+...++++++++++++.
T Consensus 588 ~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~---~----~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~ 659 (963)
T 2x19_B 588 MWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAEE---I----PNPSNKLAIVHILGLLSNLFTTLDISHHEDD 659 (963)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHSS---C----SCHHHHHHHHHHHHHHHHHHHHCCSSCCC--
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 999999999999988 5567789999999999999886421 1 2667777788999999999988763
Q ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHH-------HHHHHH
Q 036770 709 ----------------FFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRET-------LKLIET 765 (1061)
Q Consensus 709 ----------------~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i-------l~ll~~ 765 (1061)
++.+....++|.+..+...+.+ .. .-....++.+++.+ .+++..
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~---~v~e~~~~~l~~~~~~~~~~~~~~l~~ 726 (963)
T 2x19_B 660 HEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN----------DA---QVVEAVCAIFEKSVKTLLDDFAPMVPQ 726 (963)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHTT----------CH---HHHHHHHHHHHHHHHHSSSTTGGGHHH
T ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccC----------ch---HHHHHHHHHHHHHHHhhcccccccHHH
Confidence 2445556666665554443210 00 00001111111110 111111
Q ss_pred HHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhcc--CCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHH
Q 036770 766 FLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGA--MIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRA 843 (1061)
Q Consensus 766 ~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~--~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~ 843 (1061)
++. .+.. .+...+.++++++++.++..+|.. +.+.++.+++.+++++++++++++.++||++++||.|+.+
T Consensus 727 ~~~------~l~~-~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~ 799 (963)
T 2x19_B 727 LCE------MLGR-MYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQ 799 (963)
T ss_dssp HHH------HHHH-HHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHH
T ss_pred HHH------HHHH-HHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHH
Confidence 111 1111 111124678999999999977653 5667889999999999999999999999999999999999
Q ss_pred HHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCCC
Q 036770 844 IATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFH 923 (1061)
Q Consensus 844 i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~ 923 (1061)
++.+||..+++ ++..++.++++++||++++++++.+.|++++.++++.++......+|+..++..++..+|.+++|..|
T Consensus 800 ~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 878 (963)
T 2x19_B 800 ALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQAS 878 (963)
T ss_dssp HHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSC
T ss_pred HHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99999999875 33349999999999999999999999999999999887655677889999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHh-hccCC--CCCHHHHHHHHHHHhhcCCC
Q 036770 924 KPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLL-GTSFP--NMTAAEVTQFVDGLLESRND 1000 (1061)
Q Consensus 924 ~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~fp--~~~~~q~~~f~~~l~~~~~d 1000 (1061)
++++..++.+|..++. .+.+++.+|+.++| .+.|| ++++++++.|++++++.+.|
T Consensus 879 ~~~~~~~~~il~~l~~----------------------~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~ 936 (963)
T 2x19_B 879 RSLMDCFADILFALNK----------------------HCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVN 936 (963)
T ss_dssp GGGHHHHHHHHHHHHH----------------------HSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCC
T ss_pred hhHHHHHHHHHHHHHH----------------------HChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcC
Confidence 9999999998865332 23667889999999 47899 89999999999999988779
Q ss_pred hHHHHHHHHHHHhhhhhcccCC
Q 036770 1001 LSTFKNHIRDFLVQSKEFSAQD 1022 (1061)
Q Consensus 1001 ~~~f~~~lrdF~~~~k~~~~~~ 1022 (1061)
.++||+++|||++++|+++|.|
T Consensus 937 ~~~f~~~l~~F~~~~r~~~~~~ 958 (963)
T 2x19_B 937 KRRVKEMVKEFTLLCRGLHGTD 958 (963)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHHcCccCcc
Confidence 9999999999999999998843
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-74 Score=747.76 Aligned_cols=886 Identities=14% Similarity=0.202 Sum_probs=653.2
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 12 PMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 12 ~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
++|++.++++++.+|+| |++.|++|+++|++||++|++|.+|.++|..+.++++|+||+++|+++|+++|..+|++++.
T Consensus 3 ~~d~~~l~~~l~~~~~~-d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 81 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRS-NSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENRE 81 (971)
T ss_dssp --------CTHHHHHTS-TTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHH
T ss_pred hhhHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHH
Confidence 47899999999999987 56689999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccC-------ChhHHHHHHHHHHH
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKT-------SETICENCMAILKL 164 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~-------~~~~~~~~L~iL~~ 164 (1061)
.||+++++++.+..++ ++.||+|++.+++.|++++|| .||++++++++.+++ ++..++.++.+|+.
T Consensus 82 ~ir~~ll~~l~~~~~~------~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 82 ELKQKILESIVRFAGG------PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHH
Confidence 9999999999886532 368999999999999999999 999999999999876 45689999999999
Q ss_pred HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHHHhccc--ccCcchhcch
Q 036770 165 LSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT-------DLIRATLSTLHAFLS--WIPLGYIFES 235 (1061)
Q Consensus 165 l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~-------~l~~~~L~~l~~~l~--wi~~~~i~~~ 235 (1061)
++||++... +..||..+++.++..++.|++++.++++...++ ++...+|+|+++|+. |+|.+ ..+
T Consensus 155 l~EEi~~~~----~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~ 228 (971)
T 2x1g_F 155 IPEEAQVIH----TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCV 228 (971)
T ss_dssp HHHHHHHCC----CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHH
T ss_pred hHHHHhccC----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccc
Confidence 999997642 346788899999999999999999999865433 789999999999999 99998 668
Q ss_pred hhHHHHHhhC------------------CCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhh
Q 036770 236 PLLETLLKFF------------------PMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPE 297 (1061)
Q Consensus 236 ~ll~~l~~~L------------------~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~ 297 (1061)
++++.++. | .+|++|+.|++||++++++..+.++.+.+..++...+.....+. .
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~ 300 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEIT-------K 300 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHH-------H
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHH-------H
Confidence 89998887 5 56789999999999999964322233334444444333211110 0
Q ss_pred hhcCCCcch---HHHHHHHHHHHHHHHHHHHHHhc----c-chhhHHHHHHHHHHHHHhhcc-----ChhhHHHHHHHHH
Q 036770 298 AYAHGNSEE---QAFIQNLALFFTSFFKFHIRVLE----S-TQENISALLMGLEYLINISYV-----DETEVFKVCLDYW 364 (1061)
Q Consensus 298 ~~~~~~~~d---~~~~~~l~~l~~~~~~~~~~ile----~-~~~~~~~~~~~l~~ll~~~~~-----~d~ei~~~~l~fW 364 (1061)
...++| +++...++++++.+++.+...+. + .++..+.+...++.|+.++.+ .+++++..+++||
T Consensus 301 ---~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw 377 (971)
T 2x1g_F 301 ---TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFW 377 (971)
T ss_dssp ---HHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHH
T ss_pred ---HHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHH
Confidence 111223 37888999999999999877654 2 111223344667888888765 3789999999999
Q ss_pred HHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccc--cccCCc
Q 036770 365 NSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLI--VEDENG 442 (1061)
Q Consensus 365 ~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~--~~~d~~ 442 (1061)
+.+++...+...+. +. ...+..+++++.+++.+++.||.+|++... |+.+++
T Consensus 378 ~~l~~~~~~~~~~~----------------------~~----~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~ 431 (971)
T 2x1g_F 378 YMLQDEVFAMSNDE----------------------QK----HKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDL 431 (971)
T ss_dssp HHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHH
T ss_pred HHHHHHHHhccccc----------------------ch----HHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHH
Confidence 99987543110000 00 223456789999999999999999976431 222222
Q ss_pred hhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc---CCccccchhhHHHHHHHhhhCCCChhHHhH
Q 036770 443 NIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS---GEDWTWNNLNTLCWAIGSISGSMMEEQENR 519 (1061)
Q Consensus 443 e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~---~~~~~w~~le~~~~algsis~~~~~~~e~~ 519 (1061)
+.|+++ ++.+.++|..++++.++.+...+.+.+...+. +...+|+.+|+++|++|+|++...+. .+.
T Consensus 432 ~~f~~~---------R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-~~~ 501 (971)
T 2x1g_F 432 ECFRCY---------RQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-EKR 501 (971)
T ss_dssp HHHHHH---------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------C
T ss_pred HHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 233333 34567788888888787777777777765542 12368999999999999999987654 356
Q ss_pred HHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 520 FLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 520 ~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
.++++++.+..++.. +..+.++...++++|+|++|+..|++++++++++++.++ + +.|+.+||++|.+||+.|
T Consensus 502 ~l~~l~~~l~~l~~~----d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 502 QIPRLMRVLAEIPYE----KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp HHHHHHHHHHHSCTT----TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcc----ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHH
Confidence 788888866666631 134566777899999999999999999999999999988 3 789999999999999999
Q ss_pred hhcccccccCCCchHHHHHHHhHHHhhhc--CCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHh
Q 036770 600 KRKFVIVQVGENEPFVSELLSGLATTVAD--LEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQAR 677 (1061)
Q Consensus 600 ~~~l~~~~~~e~~p~l~~il~~l~~~~~~--l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~ 677 (1061)
+..+.+ |+++|++.+..+... ++.+.+..+|+|+|.++++.| ++.+..++..++.|+...|++++++..
T Consensus 575 ~~~l~p--------~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~ 645 (971)
T 2x1g_F 575 QLQLKP--------YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQADS 645 (971)
T ss_dssp HHHHHH--------HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHhccc--------cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998864 999999998887765 778899999999999999988 455678999999999999988764321
Q ss_pred ccccccCCHHHHHHHHHHHhHHHHHHhhhCh-------------hhHHHHHHHHHHHHHHHHHHH---HHHHHhHhcCCC
Q 036770 678 QSVDFLKDQDVIRTVLNILQTNTSVASALGT-------------FFLSQISVIFLDMLNVYKMYS---ELISSSISSGGP 741 (1061)
Q Consensus 678 ~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~-------------~f~~~~~~i~~~ll~~y~~~~---~~i~~~~~~~g~ 741 (1061)
.+++....++..+.+++++..+++. ++.+..+.++|.+..++..+. .+++..+...
T Consensus 646 ------~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~-- 717 (971)
T 2x1g_F 646 ------KTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAM-- 717 (971)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred ------CChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH--
Confidence 1334445667777777777666542 455666677776665554321 1111111100
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhcc--CCCChHHHHHHHHHHh
Q 036770 742 FASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGA--MIDDVPRIFEAIFQCT 819 (1061)
Q Consensus 742 ~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~--~~~~l~~i~~~l~~~t 819 (1061)
.+.+..+++.+.+++..+++. +.. .....+.+++|++++.++.++|.+ +.+.+..++..++.++
T Consensus 718 -------~~~~~~~~~~~~p~l~~~~~~------l~~-~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 783 (971)
T 2x1g_F 718 -------KHAITNLRSSFQPMLQDLCLF------IVA-SFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHS 783 (971)
T ss_dssp -------HHHHHHHHC--CTHHHHHHHH------HHH-HCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHH
T ss_pred -------HHHHHhhhhhccccHHHHHHH------HHH-HHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 011112222222222222211 111 222234588999999999999884 4566888888999999
Q ss_pred HHhhhh----ccCCChHhHHHHHHHHHHHHhhchhHhhcCChHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcc
Q 036770 820 LEMITK----NFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQ-LKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 820 l~~i~~----~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
+.++++ +++++||++++||.|+.+++.+||..++..| . +..++++++++++++++++.+++++++.+++....
T Consensus 784 ~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~--~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~ 861 (971)
T 2x1g_F 784 FKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKT--LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR 861 (971)
T ss_dssp HHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTT--SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCc--ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 998875 5778999999999999999999999998643 5 89999999999999999999999999999887753
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHH
Q 036770 895 ASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKL 974 (1061)
Q Consensus 895 ~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 974 (1061)
......+|...++..++..++..+++..+++.+...+.+|..++.. ..+.+..||.+.
T Consensus 862 ~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~----------------------~~~~~~~~l~~~ 919 (971)
T 2x1g_F 862 NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRK----------------------YAAEMAVWMKSL 919 (971)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHH----------------------CcHHHHHHHHHH
Confidence 4566788999999999999999889999999999999998876653 133456799988
Q ss_pred hh-ccCCC--CCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhhhhccc
Q 036770 975 LG-TSFPN--MTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQSKEFSA 1020 (1061)
Q Consensus 975 l~-~~fp~--~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~k~~~~ 1020 (1061)
|. +.||+ ++++++++|++++++.+.+.++||+++|||+..+|+.+|
T Consensus 920 l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 920 MSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp HTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC---
T ss_pred hcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCccc
Confidence 85 57885 899999999999988755899999999999999999977
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.4e-55 Score=573.96 Aligned_cols=906 Identities=16% Similarity=0.191 Sum_probs=589.5
Q ss_pred CHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhcCcccHHHHHHHHc-cCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 14 DVALLDATVAAFYGTG-SKEERTAADQILRDLQNNPDMWLQVVHILQ-NSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 14 di~~l~~av~~ly~~~-~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~-~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
.++++++++..+|+|+ +++.|++|+++|++||++|++|..+..+|. .+.++++||||+++|+++|+++|..+|+++|.
T Consensus 9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 3577999999999984 788899999999999999999999999886 56689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCChhHHHHHHHHHHHHHHHHhc
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSETICENCMAILKLLSEEVFD 171 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~L~iL~~l~EEv~~ 171 (1061)
.||+++++++.+..... ...+.+|++|++++++.|++++||+.||++++++++.+++++..++++|.+|+.|+||+.+
T Consensus 89 ~Ir~~ll~~l~~~~~~~--~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 89 YLKNSVMELIANGTLNI--LEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHSSCCT--TSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcc
Confidence 99999999998753211 1135789999999999999999999999999999999988888899999999999999988
Q ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------------------CcHHHHHHHHHHHHhcccccCcchhc
Q 036770 172 FSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS------------------QRTDLIRATLSTLHAFLSWIPLGYIF 233 (1061)
Q Consensus 172 ~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~------------------~~~~l~~~~L~~l~~~l~wi~~~~i~ 233 (1061)
+ ..+...|++.+++.|+.+++.|++++.+++++. .+..++..+|+|+.+|++|+|++.++
T Consensus 167 ~--~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~ 244 (1204)
T 3a6p_A 167 F--QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT 244 (1204)
T ss_dssp S--CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred c--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence 6 345568899999999999999999999999752 23468899999999999999999988
Q ss_pred ch--hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHH-----HHHHHHHhhCCCCCChhhhhcCCCcch
Q 036770 234 ES--PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYN-----VFMVQLQTILPPTTNIPEAYAHGNSEE 306 (1061)
Q Consensus 234 ~~--~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~-----~~l~~l~~~l~~~~~l~~~~~~~~~~d 306 (1061)
+. .+++.++.+++++++|..|++||++|+++++++.....+..+|. .++... ...+. .+..++|
T Consensus 245 ~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~-~~~~~--------~~~~e~d 315 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAA-QTADG--------GGLVEKH 315 (1204)
T ss_dssp TTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHH-HTCCC--------CSCCHHH
T ss_pred hccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHh-hcCCC--------CCCccHH
Confidence 75 49999999999999999999999999998654211011222221 111110 00100 0125678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccch--hhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036770 307 QAFIQNLALFFTSFFKFHIRVLESTQ--ENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVT 384 (1061)
Q Consensus 307 ~~~~~~l~~l~~~~~~~~~~ile~~~--~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~ 384 (1061)
.+|++++|++++++|+.+..++++.. ...+.+...+++++.++.+++.+++..+++||+.+.+...
T Consensus 316 ~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~------------ 383 (1204)
T 3a6p_A 316 YVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEI------------ 383 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhccc------------
Confidence 89999999999999998777665310 0011223556999999999999999999999998875320
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHH---HHhhCCCccccc----cc--cCCc-----hhHHhhhc
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLM---ICRMAKPEEVLI----VE--DENG-----NIVRETMK 450 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~l---i~km~~p~e~~~----~~--~d~~-----e~~~e~~~ 450 (1061)
......+.+++.+|+.++ +.||+||++... |. |+++ +.|++||
T Consensus 384 ----------------------~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~R- 440 (1204)
T 3a6p_A 384 ----------------------LSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSR- 440 (1204)
T ss_dssp ----------------------TTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHH-
T ss_pred ----------------------ccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHH-
Confidence 001123688999999999 899999985431 11 1111 2344444
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhcc-----------------------CCccccchhhHHHHHHHh
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLS-----------------------GEDWTWNNLNTLCWAIGS 507 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~-----------------------~~~~~w~~le~~~~algs 507 (1061)
+.+.+.+..++.+.+..+...+.+.+...+. .....|...|+..+++++
T Consensus 441 --------k~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~lea 512 (1204)
T 3a6p_A 441 --------AQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLES 512 (1204)
T ss_dssp --------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHH
Confidence 4456777788888888887666665643321 113468888998888888
Q ss_pred hhCCCC-----hhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhc---
Q 036770 508 ISGSMM-----EEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHE--- 579 (1061)
Q Consensus 508 is~~~~-----~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~--- 579 (1061)
+...+. ++.....++++++.++++.. .+++.+.+ .+.++|+|.+|+..||++|++++++++..+..
T Consensus 513 v~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~----~~p~l~~~--~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~ 586 (1204)
T 3a6p_A 513 VITQMFRTLNREEIPVNDGIELLQMVLNFDT----KDPLILSC--VLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETV 586 (1204)
T ss_dssp HHHHHHHHSCTTCCCHHHHHHHHHHHHHCCC----SCHHHHHH--HHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTT
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHhCCC----CChHHHHH--HHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCc
Confidence 875541 11112345666666555422 13544433 45599999999999999999999999986644
Q ss_pred ---------CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--c-CCcchHHHHHHHHhhhhcc
Q 036770 580 ---------THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--D-LEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 580 ---------~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~-l~~~~~~~l~eaig~li~~ 647 (1061)
....|+.+||.+|.++|+.|+.+|.+ |+++|.+.+..+.. . ++..++..+|||++.+...
T Consensus 587 ~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p--------~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~ 658 (1204)
T 3a6p_A 587 EESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP--------NFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQ 658 (1204)
T ss_dssp CSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG--------GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGG
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhcc
Confidence 23479999999999999999999986 89999999988765 5 8889999999999999656
Q ss_pred CCCHHHHHHHHHHHhhchHHHHHH-HHHHHhcccc---------------ccCCHHHH--HHHHHHHhHHHHHHhh----
Q 036770 648 ESDVQKREEYLQRLMLLPNQKWSE-IIAQARQSVD---------------FLKDQDVI--RTVLNILQTNTSVASA---- 705 (1061)
Q Consensus 648 ~~~~~~~~~~l~~Ll~~~~~~~~~-~~~~~~~~~~---------------~~~d~~~~--~~i~~il~~~~~i~~~---- 705 (1061)
+++.+.+..+++.++.|+.+.|.+ -++..-+++. ...|++.. .++.+.+..+.+..+.
T Consensus 659 ~~~~~~~~~~l~~ll~P~~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~ 738 (1204)
T 3a6p_A 659 FKNYERQKVFLEELMAPVASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWP 738 (1204)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 677777888999999999999874 1111111111 11244333 3344433322222221
Q ss_pred ----------------------hChhhHHHHHHHHHHHHHHHHHHHH-----HHHH---------------hHhcCCCCc
Q 036770 706 ----------------------LGTFFLSQISVIFLDMLNVYKMYSE-----LISS---------------SISSGGPFA 743 (1061)
Q Consensus 706 ----------------------~~~~f~~~~~~i~~~ll~~y~~~~~-----~i~~---------------~~~~~g~~~ 743 (1061)
..+++.+.+..++|.++.+...... .... ..+..|...
T Consensus 739 ~~~~~~~~~gf~~~~~~~~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~ 818 (1204)
T 3a6p_A 739 TDLEEAKAGGFVVGYTSSGNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQ 818 (1204)
T ss_dssp SSHHHHHHTTCEEEECSSCCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCC
T ss_pred CChhhhhcCCceeccCCCCCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCc
Confidence 1136678889999988887776541 1111 011122110
Q ss_pred ------c-------chhhhHHHHHHHHHHHHHHHHHHhhC-------CChh-hhhhc------CCCCcchHHHHHHH-HH
Q 036770 744 ------S-------KTSYVKLLRSVKRETLKLIETFLDKA-------EDQP-QIGKQ------NVPDARESEVLSLF-AT 795 (1061)
Q Consensus 744 ------~-------~~~~~~~~~~~~~~il~ll~~~i~~~-------~~~~-~l~~~------~~~~~r~~~~L~l~-~~ 795 (1061)
. .......+..+|..+..++....... .++. .+... ..+..+.+.+++.+ .-
T Consensus 819 ~~~~~~~~~~~~~~~~~l~~~~~~~re~~y~~lg~~~~~l~~~fy~~~~l~~~l~~~~f~~l~~~~~~~l~~li~~~~~p 898 (1204)
T 3a6p_A 819 PLLELNDSPVFKTVLERMQRFFSTLYENCFHILGKAGPSMQQDFYTVEDLATQLLSSAFVNLNNIPDYRLRPMLRVFVKP 898 (1204)
T ss_dssp CCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSTTHHHHHHHHTTSSTTTSCHHHHHHHHHHTHHH
T ss_pred ccccccccCCCcCcHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCcchHHHHHHHHHhcchhccHHHHHHHHHHHHHH
Confidence 0 11122445566666666665543221 1221 11111 23332334444333 55
Q ss_pred HHHhhhccC-CCChHHHHHHHHHHhHHhhhh--------cc--------CC---ChH---------hHHHHHHHHHHHHh
Q 036770 796 IINKYKGAM-IDDVPRIFEAIFQCTLEMITK--------NF--------ED---YPE---------HRLKFFSLLRAIAT 846 (1061)
Q Consensus 796 li~~~~~~~-~~~l~~i~~~l~~~tl~~i~~--------~~--------~~---~Pd---------~~~~~f~ll~~i~~ 846 (1061)
++...-..+ ...+++++..+|.....-|+. +. .+ .-| +.+.+-.|+..++-
T Consensus 899 ~i~~CP~~~~~~~l~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~ 978 (1204)
T 3a6p_A 899 LVLFCPPEHYEALVSPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCV 978 (1204)
T ss_dssp HHHTCCGGGTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555444333 445667777777665554431 10 00 001 22333333332210
Q ss_pred hc----------------------------------hhHhhcCChHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHH
Q 036770 847 HC----------------------------------FPALIRLSSQQLKLVMDSIIWAFRHTERN-IAETGLNLLLEMLK 891 (1061)
Q Consensus 847 ~~----------------------------------~~~l~~~~~~~~~~~~~~i~~~~~~~~~~-i~~~~l~~l~~l~~ 891 (1061)
.. -..++ ..+..+..++.....++...|+. .+..+..+...++.
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~ 1057 (1204)
T 3a6p_A 979 SKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLM-KHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLK 1057 (1204)
T ss_dssp C------------------------------CBCHHHHHHH-SSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHT
T ss_pred CCCCCCccccccccccccccccccccccchhhcchHHHHHh-cCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHH
Confidence 00 00111 12334666677666777777777 66666665556666
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHhc-cCCCccchHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHH
Q 036770 892 NFQASEFCNQFYRTYFVTIEQEIFAVLT-DTFHKPGFKLHVLVLQHLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREY 970 (1061)
Q Consensus 892 ~~~~~~~~~~f~~~~~~~~~~~~~~~~t-d~~~~~~f~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 970 (1061)
.+.......++ ...+...++..+. ...|...+..-+.++..++.... . .. .|
T Consensus 1058 ~~~~~~~~~~~----~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~---------~---------~~-----~~ 1110 (1204)
T 3a6p_A 1058 QVLSGTLLADA----VTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALR---------P---------RY-----LE 1110 (1204)
T ss_dssp TSCSSCCCHHH----HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHST---------T---------TC-----ST
T ss_pred HHhcccCchHH----HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhC---------C---------CC-----cc
Confidence 55331100112 2223344444433 67788766666666655444321 0 11 25
Q ss_pred HHHHhhccCCCCCHHHHHHHHHHHhhcC---CChHHHHHHHHHHHhhhhhc
Q 036770 971 TIKLLGTSFPNMTAAEVTQFVDGLLESR---NDLSTFKNHIRDFLVQSKEF 1018 (1061)
Q Consensus 971 l~~~l~~~fp~~~~~q~~~f~~~l~~~~---~d~~~f~~~lrdF~~~~k~~ 1018 (1061)
+.+.|. ..|+++++.++.|..++.+.. ++.|+-|..++||+..+|+-
T Consensus 1111 ~~~vl~-~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~ 1160 (1204)
T 3a6p_A 1111 IRAVME-QIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGK 1160 (1204)
T ss_dssp HHHHHT-TSSSCCHHHHHHHHHHSSCC------------------------
T ss_pred HHHHHH-hCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCC
Confidence 666665 679999999999999886432 35788999999998888875
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=100.00 E-value=4.6e-59 Score=496.60 Aligned_cols=304 Identities=48% Similarity=0.860 Sum_probs=289.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhh-------------
Q 036770 712 SQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGK------------- 778 (1061)
Q Consensus 712 ~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~------------- 778 (1061)
+|++.||.+++++|+.+|+.|..+++..|+.++++|.+|.||++||+|++++++|+++.++++.+.+
T Consensus 2 ~Ql~~iy~dml~lY~~~S~~Is~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~D 81 (321)
T 1w9c_A 2 IQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLID 81 (321)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988654432
Q ss_pred --cCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCC
Q 036770 779 --QNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLS 856 (1061)
Q Consensus 779 --~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~ 856 (1061)
.+.|++|+|+||++++++|+++++.+.+.+|.|+++||+||++||++|+++|||||.+||+|+++++++||..++.+|
T Consensus 82 Y~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp 161 (321)
T 1w9c_A 82 YQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIP 161 (321)
T ss_dssp HHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSC
T ss_pred HHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 388999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHH
Q 036770 857 SQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQA-SEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQ 935 (1061)
Q Consensus 857 ~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~ 935 (1061)
+++++.+++|++||+||++|+|+++||+++.+++++++. ++++++||++||..+++++|.|+||+.|++||+.|+.+|+
T Consensus 162 ~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~ 241 (321)
T 1w9c_A 162 PTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILA 241 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999974 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCccccCCCCCCCCCCCCCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhh
Q 036770 936 HLFCLVESGLLTEPLWDAATIPYPYPNNAMFVREYTIKLLGTSFPNMTAAEVTQFVDGLLESRNDLSTFKNHIRDFLVQS 1015 (1061)
Q Consensus 936 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~fp~~~~~q~~~f~~~l~~~~~d~~~f~~~lrdF~~~~ 1015 (1061)
+|+.+++.|+|+.|++++. | ..|.+++++|+.++|.++||+++++|+..|++++++.++|..+||+++|||++++
T Consensus 242 ~lf~~ve~~~i~~pl~~~~--~---~~n~~~v~~~l~~lL~~~Fp~l~~~qi~~fv~glf~~~~d~~~Fk~~lrDFLIqi 316 (321)
T 1w9c_A 242 YMFNLVEEGKISTSLNPGN--P---VNNQIFLQEYVANLLKSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQI 316 (321)
T ss_dssp HHHHHHHTTCCCSCSCSSS--C---CCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCccccccCCCC--C---cccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 9999999999999998864 3 2689999999999999999999999999999999999999999999999999999
Q ss_pred hhccc
Q 036770 1016 KEFSA 1020 (1061)
Q Consensus 1016 k~~~~ 1020 (1061)
|||+|
T Consensus 317 KEf~g 321 (321)
T 1w9c_A 317 KEFAG 321 (321)
T ss_dssp HTTTC
T ss_pred HHhcC
Confidence 99976
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=6.7e-37 Score=390.54 Aligned_cols=718 Identities=16% Similarity=0.257 Sum_probs=501.5
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHc--cCCChHHHHHHHHHHHHHHhcccCCCCHHHHH
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQ--NSKNLNTKFFALQVLEGVIKYRWNALPVEQRD 91 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~--~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~ 91 (1061)
+++++.+++...++| |++.|++|++.|++++++|++|..+..++. .+.++.+|++|+..|++.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~s~-d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQSP-DTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHhCc-CHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 577888888888887 788999999999999999999999999997 46688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHh
Q 036770 92 GMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVF 170 (1061)
Q Consensus 92 ~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~ 170 (1061)
.||+.+++.+.. + +..+|++++.+++.|+++++|..||++++.+++.++++ ....+.++.+|..++++..
T Consensus 90 ~ik~~ll~~l~~----~-----~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~ 160 (852)
T 4fdd_A 90 FIKSECLNNIGD----S-----SPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA 160 (852)
T ss_dssp HHHHHHHTTTTC----S-----SHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC----C-----CHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH
Confidence 999999997632 2 24689999999999999999999999999999998864 5678889999999998863
Q ss_pred ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhc-chhhHHHHHhhCCC--
Q 036770 171 DFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIF-ESPLLETLLKFFPM-- 247 (1061)
Q Consensus 171 ~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~-~~~ll~~l~~~L~~-- 247 (1061)
.. +. +. .+...+..++..+.+.+. ..+++++..+++|+..++...+-.... -+.+++.++..+.+
T Consensus 161 ~~----~~---~~----~~~~~~~~il~~l~~~l~-~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~ 228 (852)
T 4fdd_A 161 EI----LD---SD----VLDRPLNIMIPKFLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEE 228 (852)
T ss_dssp TH----HH---HC----SSSSCHHHHHHHHTTTTT-CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCC
T ss_pred HH----hc---hh----hhcchHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCC
Confidence 31 00 00 000123445555555554 356788999999999888654321100 13455666655443
Q ss_pred ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036770 248 PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRV 327 (1061)
Q Consensus 248 ~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~i 327 (1061)
+++|..|++||..++.. +...
T Consensus 229 ~~vr~~a~~~L~~l~~~-----------------------------------------------------------~~~~ 249 (852)
T 4fdd_A 229 PEVRKNVCRALVMLLEV-----------------------------------------------------------RMDR 249 (852)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------------------------------------------------CHHH
T ss_pred HHHHHHHHHHHHHHHHh-----------------------------------------------------------CHHH
Confidence 34666666666666552 1111
Q ss_pred hccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhh
Q 036770 328 LESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLL 407 (1061)
Q Consensus 328 le~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~ 407 (1061)
+.. ...+ .+.+++.+...+++++...+++||..+++.-
T Consensus 250 ~~~--~l~~----l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~------------------------------------ 287 (852)
T 4fdd_A 250 LLP--HMHN----IVEYMLQRTQDQDENVALEACEFWLTLAEQP------------------------------------ 287 (852)
T ss_dssp HGG--GHHH----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTST------------------------------------
T ss_pred HHH--HHHH----HHHHHHHHccCCcHHHHHHHHHHHHHHhcch------------------------------------
Confidence 110 0111 1244444445567788889999999876420
Q ss_pred hhhhhhHHhhHHHHHHHHHhhCCCcccccc-ccCCchhHHhhhcch-hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHH
Q 036770 408 QRRQLYAVPLSKLRMLMICRMAKPEEVLIV-EDENGNIVRETMKDN-DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLS 485 (1061)
Q Consensus 408 ~~~~~~~~~l~~L~~~li~km~~p~e~~~~-~~d~~e~~~e~~~d~-~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~ 485 (1061)
..+....+++..++++++.+|.++++...| +.|.++. +...|. ..+..++....+|..++...++.+...+++.+.
T Consensus 288 ~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed--~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~ 365 (852)
T 4fdd_A 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGG--SGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLK 365 (852)
T ss_dssp THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccc--cccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 012234677888999999999887643322 1110000 000111 234456667788888776666677777777777
Q ss_pred hhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHH--hH
Q 036770 486 KQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRA--HW 563 (1061)
Q Consensus 486 ~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~--~~ 563 (1061)
..+.+ .+|+..++++|++|+|++...+. -..+++.+++.++.+..+ +...++...++++|+|++|+.. +.
T Consensus 366 ~~l~~--~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 366 ELLFH--HEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSD-----KKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHTC--SSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHhcC--CCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHHhccchHH
Confidence 66543 47999999999999999887543 346788888888887754 5566777788999999999875 46
Q ss_pred HHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhh
Q 036770 564 KFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGH 643 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~ 643 (1061)
.++..+++.++..+.++++.|+..||.++..+|+.|+..+. ||+..++..+.........+....++++++.
T Consensus 438 ~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~--------~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~ 509 (852)
T 4fdd_A 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV--------PYLAYILDTLVFAFSKYQHKNLLILYDAIGT 509 (852)
T ss_dssp TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGG--------GGHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhH--------hHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999888899999999999999999987765 4889999888877766666777789999999
Q ss_pred hhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHH
Q 036770 644 MIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLN 723 (1061)
Q Consensus 644 li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~ 723 (1061)
++.+++....+..+++.+|.++.+.|+.+. + .+++ +..+++|++.+++.+|..|.|+++.+++.+++
T Consensus 510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~-----d----~~~~----~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~ 576 (852)
T 4fdd_A 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLK-----D----EDKD----LFPLLECLSSVATALQSGFLPYCEPVYQRCVN 576 (852)
T ss_dssp HHHHHGGGGCCHHHHHHHHHHHHHHHHHSC-----T----TCTT----HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHhcc-----c----ccHH----HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 998877654456799999999888876422 1 1222 23678999999999999999999998887665
Q ss_pred HHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCc-chHHHHHHHHHHHHhhhc
Q 036770 724 VYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDA-RESEVLSLFATIINKYKG 802 (1061)
Q Consensus 724 ~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~-r~~~~L~l~~~li~~~~~ 802 (1061)
+.+..-. . ......+.. .. ..++. .....+.+++.++..+|.
T Consensus 577 ~l~~~l~---~-------------------------------~~~~~~~~~-~~--~~~d~~~~~~~l~~l~~l~~~l~~ 619 (852)
T 4fdd_A 577 LVQKTLA---Q-------------------------------AMLNNAQPD-QY--EAPDKDFMIVALDLLSGLAEGLGG 619 (852)
T ss_dssp HHHHHHH---H-------------------------------HHHHHHCTT-TS--CCCCTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHH---H-------------------------------HHHhhcCCc-cc--CCCcchHHHHHHHHHHHHHHHHhH
Confidence 5442210 0 000000000 00 01110 113468999999999988
Q ss_pred cCCCCh--HHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHH
Q 036770 803 AMIDDV--PRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAE 880 (1061)
Q Consensus 803 ~~~~~l--~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 880 (1061)
.+.+++ +.++..++.+ ++ ...|++|++.+.+++.++..++..+.. .+..++..+..++.+.++++.+
T Consensus 620 ~~~~~~~~~~~~~~l~~~----l~---~~~~~vr~~a~~~l~~l~~~~~~~~~~----~l~~~lp~l~~~l~~~~~~v~~ 688 (852)
T 4fdd_A 620 NIEQLVARSNILTLMYQC----MQ---DKMPEVRQSSFALLGDLTKACFQHVKP----CIADFMPILGTNLNPEFISVCN 688 (852)
T ss_dssp GGHHHHHTCCHHHHHHHH----TT---CSSHHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHHTCCTTSHHHHH
T ss_pred hHHHHhcCCcHHHHHHHH----hC---CCChhHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCccchHHHH
Confidence 776555 4555555443 22 246899999999999999988876532 4667777788888888889999
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCC-CccchHHHHHHHHHHHH
Q 036770 881 TGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTF-HKPGFKLHVLVLQHLFC 939 (1061)
Q Consensus 881 ~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~-~~~~f~~~~~~L~~l~~ 939 (1061)
.++..+.++....+.. ++.|+..+++.++.++.++. ++......+..++.+..
T Consensus 689 ~a~~alg~i~~~~~~~------~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 689 NATWAIGEISIQMGIE------MQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp HHHHHHHHHHHHHGGG------GGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHh------HHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 9999888887776531 22334455556666665543 33333344555555444
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=3.6e-32 Score=348.08 Aligned_cols=740 Identities=15% Similarity=0.170 Sum_probs=478.5
Q ss_pred CCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcc-------
Q 036770 13 MDVALLDATVAAF-YGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYR------- 81 (1061)
Q Consensus 13 ~di~~l~~av~~l-y~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~------- 81 (1061)
+|..++.+++..+ ++| |++.|++|+++|++++++ |++|..+.+++.++ .++++|++|+.+|++.|+++
T Consensus 1 Md~~~l~~~L~~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~ 79 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSP-DQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ 79 (861)
T ss_dssp CCHHHHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred CCHHHHHHHHHHcccCc-CHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHH
Confidence 3667899999999 887 777999999999999986 89999999999765 47899999999999999766
Q ss_pred ----cCC-CCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccC--Chh
Q 036770 82 ----WNA-LPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKT--SET 153 (1061)
Q Consensus 82 ----w~~-l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~--~~~ 153 (1061)
|.. ++++++..||+.+++.+.. + +..+|++++.+++.|+.++||. .||++++.+++.+++ ++.
T Consensus 80 ~~~~~~~~l~~~~~~~ik~~ll~~l~~----~-----~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 80 FAQRWITQVSPEAKNQIKTNALTALVS----I-----EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHTC----S-----SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHH
T ss_pred HHHhHhhhCCHHHHHHHHHHHHHHHCC----C-----chHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHH
Confidence 565 9999999999999998743 1 2457999999999999999995 999999999999976 456
Q ss_pred HHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh
Q 036770 154 ICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI 232 (1061)
Q Consensus 154 ~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i 232 (1061)
.+..++.+|..+++++.. .. | .+....+.++..+...+.... +++++..+++|+.+++.|+..+.-
T Consensus 151 ~r~~al~~l~~l~~~~~~----~~---~------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~ 217 (861)
T 2bpt_A 151 VKRASLLALGYMCESADP----QS---Q------ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217 (861)
T ss_dssp HHHHHHHHHHHHHHTSST----TS---S------TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHT
T ss_pred HHHHHHHHHHHHHHcCCh----hh---h------HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 788899999999997532 11 0 122356778888888887643 688999999999999988653321
Q ss_pred c---chhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchH
Q 036770 233 F---ESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQ 307 (1061)
Q Consensus 233 ~---~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~ 307 (1061)
. .+.+++.++..+. +++.|..|++||.+++...+. .+..
T Consensus 218 ~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~----------------------------------- 261 (861)
T 2bpt_A 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT-FMKP----------------------------------- 261 (861)
T ss_dssp SHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG-GCHH-----------------------------------
T ss_pred ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHH-----------------------------------
Confidence 1 1235555555444 345667777777666653110 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHh---ccCCCcccc
Q 036770 308 AFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAH---NNLENPAVT 384 (1061)
Q Consensus 308 ~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~---~~~~~~~~~ 384 (1061)
++.. ..+..++.....+++++...+++||..+++...... ...+.
T Consensus 262 -~l~~---------------------------~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~---- 309 (861)
T 2bpt_A 262 -YMEQ---------------------------ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQ---- 309 (861)
T ss_dssp -HHHH---------------------------THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----
T ss_pred -HHHH---------------------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccC----
Confidence 0000 001222222233456788889999999887642100 00000
Q ss_pred cccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHH
Q 036770 385 ANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRET 464 (1061)
Q Consensus 385 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~ 464 (1061)
.| .. .....++++..+++.++..|..+++. +|++ ++..++....+
T Consensus 310 ~~----------~~----------~~~~~~~~~~~il~~ll~~l~~~~~d----~~d~-----------~~~~r~~a~~~ 354 (861)
T 2bpt_A 310 SP----------LQ----------SYNFALSSIKDVVPNLLNLLTRQNED----PEDD-----------DWNVSMSAGAC 354 (861)
T ss_dssp CS----------CC----------CCCHHHHHHHHHHHHHHHHTTCCCCC-----CCC-----------CCHHHHHHHHH
T ss_pred Cc----------hh----------hHHHHHHHHHHHHHHHHHHHHhcccc----cccc-----------cCcHHHHHHHH
Confidence 00 00 11123556788888999999876531 1111 12234455566
Q ss_pred HHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHH
Q 036770 465 LIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVI 544 (1061)
Q Consensus 465 L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v 544 (1061)
|..++...++.+...+++.+.+.+++ .+|+..+++++++|++++...++.-..+++.+++.|++...+ +...+
T Consensus 355 L~~l~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d-----~~~~v 427 (861)
T 2bpt_A 355 LQLFAQNCGNHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND-----QSLQV 427 (861)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC-----SCHHH
T ss_pred HHHHHHHccHhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-----CcHHH
Confidence 66665443455666677777665533 479999999999999998765444467788888888876653 34555
Q ss_pred HHhHHHHhccchHHHHHh---HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHh
Q 036770 545 ASNIMYVVGQYPRFLRAH---WKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSG 621 (1061)
Q Consensus 545 ~s~i~~~ig~y~~~l~~~---~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~ 621 (1061)
+...++++|+|++++..+ +++++.+++.++..++++ +.|+..||.++..+++.|... .++...||+..++..
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~----~~~~l~~~~~~il~~ 502 (861)
T 2bpt_A 428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEA----TPSPIYNFYPALVDG 502 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSS----SSCGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccc----cchhhHHHHHHHHHH
Confidence 666889999999999764 568999999999988775 899999999999999998620 011223688999888
Q ss_pred HHHhhhcCC--cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccC--C-HHHHHHHHHHH
Q 036770 622 LATTVADLE--PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLK--D-QDVIRTVLNIL 696 (1061)
Q Consensus 622 l~~~~~~l~--~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~--d-~~~~~~i~~il 696 (1061)
+......-+ ..-+...++++|.++...+.. ...++..++.++...|...+.... .... + .........++
T Consensus 503 L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~---~i~~~~~~~~~~~~~~~~~ 577 (861)
T 2bpt_A 503 LIGAANRIDNEFNARASAFSALTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDE---NQLTLEDAQSLQELQSNIL 577 (861)
T ss_dssp HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCG---GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhc---ccCChhhHHHHHHHHHHHH
Confidence 877665333 456788999999999988864 246788888888877765421100 0001 1 11111235677
Q ss_pred hHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHH-HH-HHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChh
Q 036770 697 QTNTSVASALGTFFLSQISVIFLDMLNVYKMYSE-LI-SSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQP 774 (1061)
Q Consensus 697 ~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~-~i-~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~ 774 (1061)
.++..+++++|..+.|++..+++.+++.++.... .+ ...+...| ......+..+.+.+..++..+ .
T Consensus 578 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~---------~l~~~~~~~~~~~l~~i~~~l---~ 645 (861)
T 2bpt_A 578 TVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS---------ALAASLGKGFEKYLETFSPYL---L 645 (861)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH---------HHHHHHGGGGHHHHHHHHHHH---H
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH---------HHHHHHhhhHHHHHHHHHHHH---H
Confidence 8888899999988888888888888777653311 11 00010000 000011111111111111100 0
Q ss_pred hhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhc
Q 036770 775 QIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIR 854 (1061)
Q Consensus 775 ~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~ 854 (1061)
.......+..| ...+.+++.++...|..+.++++.++..++. .+.++ ..++++|...+..+..++.++...+..
T Consensus 646 ~~l~~~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~----~l~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~ 719 (861)
T 2bpt_A 646 KALNQVDSPVS-ITAVGFIADISNSLEEDFRRYSDAMMNVLAQ----MISNP-NARRELKPAVLSVFGDIASNIGADFIP 719 (861)
T ss_dssp HHHHCTTSHHH-HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH----HHHCT-TCCTTHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHhccccHHHH-HHHHHHHHHHHHHhchhccchHHHHHHHHHH----HhCCc-cccHhhhHHHHHHHHHHHHHhhhhHHH
Confidence 00111122222 3478888889988887666666666655543 33331 245899999999999999987665432
Q ss_pred CChHHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 036770 855 LSSQQLKLVMDSIIWAFRHTE-----------RNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTD 920 (1061)
Q Consensus 855 ~~~~~~~~~~~~i~~~~~~~~-----------~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td 920 (1061)
.+..++..+..++.+.. ..+...+++.+..++...+.. .+.+..|...++..+...+.|
T Consensus 720 ----~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~~~~~~i~~~l~~~~~d 789 (861)
T 2bpt_A 720 ----YLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALFPYVGTIFQFIAQVAED 789 (861)
T ss_dssp ----HHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHGGGHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHHHcC
Confidence 34555555555555421 235566777777777666532 233444555555544444444
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=3.7e-31 Score=340.88 Aligned_cols=707 Identities=12% Similarity=0.138 Sum_probs=423.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccC-CChHHHHHHHHHHHHHHhcccC------CCC
Q 036770 14 DVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNS-KNLNTKFFALQVLEGVIKYRWN------ALP 86 (1061)
Q Consensus 14 di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~~~w~------~l~ 86 (1061)
|++.+.+++....+| |++.| |+++|++++++|++|..+.+++.+. .+.++|++|+.+||+.|+++|. .+|
T Consensus 3 d~~~l~~~L~~~~sp-d~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~ 79 (960)
T 1wa5_C 3 DLETVAKFLAESVIA-STAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP 79 (960)
T ss_dssp HHHHHHHHHHHTTSG-GGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred cHHHHHHHHHHhcCC-CHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence 567888888887776 55455 9999999999999999999999653 4689999999999999999998 899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHH
Q 036770 87 VEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLL 165 (1061)
Q Consensus 87 ~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l 165 (1061)
+++|..||+.+++.+... +..+|++++.+++.|++++||+.||++++++++.++++ ......+|.+|..+
T Consensus 80 ~~~k~~ik~~ll~~l~~~---------~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i 150 (960)
T 1wa5_C 80 ANNVELIKKEIVPLMISL---------PNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSI 150 (960)
T ss_dssp HHHHHHHHHHHHHHHHHS---------CHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999998762 25689999999999999999999999999999998765 35677889999988
Q ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcCc--------HHHHHHHHHHHHhcccccCcchhcc
Q 036770 166 SEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYV---LSASQR--------TDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 166 ~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~---L~~~~~--------~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
+++.-. .--...-+.+++..+...++.+++++..+ ++.... .++...+++++.+ +.|.+....+.
T Consensus 151 ~~~~~~---~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~-l~~~~~~~~~~ 226 (960)
T 1wa5_C 151 FKRWRP---LFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYD-FNCQDIPEFFE 226 (960)
T ss_dssp HGGGTT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHH-HHSSCCCHHHH
T ss_pred HHHHHH---hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HhhccchHHHH
Confidence 875311 00112233456666667777777766554 443221 1233446666654 33333322221
Q ss_pred ---hhhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 ---SPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ---~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
..+++.+.+++ ....+. . ..+ .+. ...........
T Consensus 227 ~~~~~~~~~~~~~l-----------------~~~~p~--------------------~--~~d-~d~--~~~~~~~~vk~ 264 (960)
T 1wa5_C 227 DNIQVGMGIFHKYL-----------------SYSNPL--------------------L--EDP-DET--EHASVLIKVKS 264 (960)
T ss_dssp HTHHHHHHHHHHHH-----------------SCCSCC--------------------C--C---------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------cCCCCc--------------------c--cCC-ccc--ccccHHHHHHH
Confidence 12222222221 110000 0 000 000 00000112233
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCC
Q 036770 312 NLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISY-VDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGL 390 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~-~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~ 390 (1061)
.+++.++.+.+.+...+. +...+.+...++.+..... ..++++...+++||..+++.
T Consensus 265 ~~~~~l~~l~~~~~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-------------------- 322 (960)
T 1wa5_C 265 SIQELVQLYTTRYEDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-------------------- 322 (960)
T ss_dssp HHHHHHHHHHHHCHHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS--------------------
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc--------------------
Confidence 445555555555433331 1111222111222221111 23567889999999987632
Q ss_pred CCCCCchhhhhhhhhhhhhhhhhH--HhhHHHH-HHHHHhhCCCcccc-ccccCCchhHHhhhcchhhHHHHHHHHHHHH
Q 036770 391 PMPLLPSVVDGIGAQLLQRRQLYA--VPLSKLR-MLMICRMAKPEEVL-IVEDENGNIVRETMKDNDVLVQYKIMRETLI 466 (1061)
Q Consensus 391 ~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~L~-~~li~km~~p~e~~-~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~ 466 (1061)
...+..++ +++.+++ .+++..|.++++.. .|++|..|.+++...+.+....++...++|.
T Consensus 323 ----------------~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 323 ----------------PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp ----------------HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred ----------------HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 11122343 7889999 78899999876543 3766655555544434444456777888888
Q ss_pred HHhcCCHHhHHHHHHHHHHhhcc----CCccccchhhHHHHHHHhhhCCCC-hh----------HHhHHHHH-HHHHHHH
Q 036770 467 YLSHLDHEDTEKQMLKKLSKQLS----GEDWTWNNLNTLCWAIGSISGSMM-EE----------QENRFLVM-VIRDLLN 530 (1061)
Q Consensus 467 ~l~~l~~~~~~~~i~~~L~~~~~----~~~~~w~~le~~~~algsis~~~~-~~----------~e~~~l~~-vi~~Ll~ 530 (1061)
.++...++.+...+++.+.+.+. ++..+|+..|++++++|++++... .+ .-..++.+ +++.| +
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l-~ 465 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL-T 465 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH-H
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHh-c
Confidence 88877776666666665554432 234679999999999999985321 00 11233332 34433 1
Q ss_pred hhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh------hccc
Q 036770 531 LCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK------RKFV 604 (1061)
Q Consensus 531 l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~------~~l~ 604 (1061)
-+. ...+.++...+|++|+|++|+ +++++..+++.++..++++++.|+..||++|.++|+.+. ..+.
T Consensus 466 ~~~-----~~~p~vr~~a~~~lg~~~~~~--~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~ 538 (960)
T 1wa5_C 466 SNN-----IPHIILRVDAIKYIYTFRNQL--TKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFH 538 (960)
T ss_dssp CSS-----CSCHHHHHHHHHHHHHTGGGS--CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSC
T ss_pred CCC-----CCCceehHHHHHHHHHHHhhC--CHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccccccc
Confidence 110 114555666889999999998 678999999999998888889999999999999997421 0110
Q ss_pred ccccCCCchHHHHHHHhHHHhhhcC---Cc--chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhcc
Q 036770 605 IVQVGENEPFVSELLSGLATTVADL---EP--HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQS 679 (1061)
Q Consensus 605 ~~~~~e~~p~l~~il~~l~~~~~~l---~~--~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~ 679 (1061)
. ....||+..+++.+-...... +. .....+++|++.++...+..- ..++..++..+...|+... ++
T Consensus 539 ~---~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~--~p~~~~l~~~L~~~l~~~~----~~ 609 (960)
T 1wa5_C 539 K---EDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI--QPLFPQLLAQFIEIVTIMA----KN 609 (960)
T ss_dssp G---GGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT--GGGHHHHHHHHHHHHHHHT----TS
T ss_pred H---HHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHH----hC
Confidence 0 123469999999887765543 11 145689999999998877532 2477778877777666532 22
Q ss_pred ccccCCHHHHHHHHHHHhHHHHHHhhhCh-hhHHHHHHHHHHHHHHHHH--------HHHHHHHhHhcCCCCc--cchhh
Q 036770 680 VDFLKDQDVIRTVLNILQTNTSVASALGT-FFLSQISVIFLDMLNVYKM--------YSELISSSISSGGPFA--SKTSY 748 (1061)
Q Consensus 680 ~~~~~d~~~~~~i~~il~~~~~i~~~~~~-~f~~~~~~i~~~ll~~y~~--------~~~~i~~~~~~~g~~~--~~~~~ 748 (1061)
+ .++.. .+.++.+++.++.+.++ .+.+..+.++|.+..+... ..+++........... ...-+
T Consensus 610 ~---~~~~~---~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 683 (960)
T 1wa5_C 610 P---SNPRF---THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLA 683 (960)
T ss_dssp C---CCHHH---HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGH
T ss_pred C---CCcHH---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2 23322 25678888888877443 4555556666665543321 1122211111110000 00000
Q ss_pred hHHH--H-----HHHHHHHHHHHHHHhhCCC----hhhhhh---c--CCCCcchHHHHHHHHHHHHhhhcc-CCCChHHH
Q 036770 749 VKLL--R-----SVKRETLKLIETFLDKAED----QPQIGK---Q--NVPDARESEVLSLFATIINKYKGA-MIDDVPRI 811 (1061)
Q Consensus 749 ~~~~--~-----~~~~~il~ll~~~i~~~~~----~~~l~~---~--~~~~~r~~~~L~l~~~li~~~~~~-~~~~l~~i 811 (1061)
.+.+ . ..-..+.+.+..|+....+ .+.+.. . .... .+.....+++.++..+++. +.++++.+
T Consensus 684 ~~l~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~a~~ll~~i~~~~~~~~~~~yl~~i 762 (960)
T 1wa5_C 684 QPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA-YEVHGFDLLEHIMLLIDMNRLRPYIKQI 762 (960)
T ss_dssp HHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT-THHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred HHHcCHHHhcCCCCchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc-ccchHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 0000 0 0001223344444332211 111111 0 1111 2466889999999999887 88888888
Q ss_pred HHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHh
Q 036770 812 FEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIAT 846 (1061)
Q Consensus 812 ~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~ 846 (1061)
+..++.. ++. ...+++++.+..++..++-
T Consensus 763 ~~~l~~~----l~~--~~~~~~~~~~l~~~~~~~~ 791 (960)
T 1wa5_C 763 AVLLLQR----LQN--SKTERYVKKLTVFFGLISN 791 (960)
T ss_dssp HHHHHHG----GGS--SCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----Hhh--CCcHhHHHHHHHHHHHHHH
Confidence 8776644 332 2457788777777766653
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.97 E-value=2.6e-27 Score=303.60 Aligned_cols=716 Identities=14% Similarity=0.183 Sum_probs=449.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--cccHHHHHHHHccC-CChHHHHHHHHHHHHHHh-----------cccC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN--PDMWLQVVHILQNS-KNLNTKFFALQVLEGVIK-----------YRWN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s--~~aw~~~~~iL~~s-~~~~~rffaa~~L~~~I~-----------~~w~ 83 (1061)
+.+++..+++| +++.|++|+++|++++++ |+.|..+.+++.++ .++.+|.+|+.+|++.|. ++|.
T Consensus 3 l~~~L~~~~s~-d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 3 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp HHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhc
Confidence 56778888776 777999999999999987 88999999999764 468999999999999984 5699
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC-CccchhHHHHHHHccCC---hhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP-ARWRSFIPDLVAAAKTS---ETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p-~~Wp~~i~~l~~~~~~~---~~~~~~~L 159 (1061)
.++++.+..||+.+++.+.. .+ ..+ ++++.+++.|+..++| ..||++++.+++.+.++ +.....++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~--~~-------~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al 151 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT--CC-------SSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC--Cc-------HHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999998743 11 124 7899999999999999 89999999999988654 46778899
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh---cch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI---FES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i---~~~ 235 (1061)
.+|..+++++.. +.+....+.++..+.+.+.... +..++..+++|+..++.+++.+.. ..+
T Consensus 152 ~~l~~l~~~~~~---------------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (876)
T 1qgr_A 152 EAIGYICQDIDP---------------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (876)
T ss_dssp HHHHHHHHHSCH---------------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred HHHHHHHHhcCH---------------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999987421 1133467788888888887653 678899999999999877543211 011
Q ss_pred hhHHHHHhhCCC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHH
Q 036770 236 PLLETLLKFFPM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNL 313 (1061)
Q Consensus 236 ~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l 313 (1061)
.+++.++..+.+ +++|..|++||..++...+
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~----------------------------------------------- 249 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY----------------------------------------------- 249 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG-----------------------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH-----------------------------------------------
Confidence 245555554442 3455666666666555311
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHH-HHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH---hcc-CCCcccccccC
Q 036770 314 ALFFTSFFKFHIRVLESTQENISALL-MGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA---HNN-LENPAVTANMM 388 (1061)
Q Consensus 314 ~~l~~~~~~~~~~ile~~~~~~~~~~-~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~---~~~-~~~~~~~~~~~ 388 (1061)
..+. +.+. ..+..++.+...+++++...+++||..+++..... ..+ .+... .|.
T Consensus 250 ------------~~~~------~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~~- 308 (876)
T 1qgr_A 250 ------------QYME------TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR--PPE- 308 (876)
T ss_dssp ------------GGCH------HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCS-
T ss_pred ------------HHHH------HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCC--Ccc-
Confidence 1000 0000 11233333334456677888899999887653210 000 00000 000
Q ss_pred CCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHH
Q 036770 389 GLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYL 468 (1061)
Q Consensus 389 g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l 468 (1061)
.......++.+..+++.++..|...++ |+|++ ++..++....+|..+
T Consensus 309 ------------------~~~~~~~~~~~~~ll~~ll~~l~~~~~----d~~~~-----------~~~~r~~a~~~l~~l 355 (876)
T 1qgr_A 309 ------------------HTSKFYAKGALQYLVPILTQTLTKQDE----NDDDD-----------DWNPCKAAGVCLMLL 355 (876)
T ss_dssp ------------------SCCCCHHHHHHHHHHHHHHHHTTCCCS----SCCTT-----------CCCHHHHHHHHHHHH
T ss_pred ------------------chhHHHHHHHHHHHhHHHHHHhhcccc----ccccc-----------ccHHHHHHHHHHHHH
Confidence 000112234567778888888876542 11111 122233444555555
Q ss_pred hcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhH
Q 036770 469 SHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNI 548 (1061)
Q Consensus 469 ~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i 548 (1061)
+...++.+...+++.+...+. ..+|+..++++|++|.+++...++.-..+++++++.++....+ +...++...
T Consensus 356 ~~~~~~~~~~~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-----~~~~vr~~a 428 (876)
T 1qgr_A 356 ATCCEDDIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTA 428 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-----SSHHHHHHH
T ss_pred HHHCcHhhHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHH
Confidence 544345555666666665543 3479999999999999998876443346788888888776643 345566667
Q ss_pred HHHhccchHHHHH---hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc------cccCCCchHHHHHH
Q 036770 549 MYVVGQYPRFLRA---HWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI------VQVGENEPFVSELL 619 (1061)
Q Consensus 549 ~~~ig~y~~~l~~---~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~------~~~~e~~p~l~~il 619 (1061)
++++|++++++.. +..+++.+++.++..+.++ +.|+..|+.++..++..|+.+... .......||+..++
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il 507 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIV 507 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHH
T ss_pred HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHH
Confidence 8899999999865 4578999999999988774 899999999999999998721000 00112347899999
Q ss_pred HhHHHhhhcCC---cchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHH-HHHH
Q 036770 620 SGLATTVADLE---PHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRT-VLNI 695 (1061)
Q Consensus 620 ~~l~~~~~~l~---~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~i 695 (1061)
..+.......+ ..-+..++++++.++...+.+ ...++..++.++...|...+... .+.....|++.... ...+
T Consensus 508 ~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~d~~~~~~~~~~~ 584 (876)
T 1qgr_A 508 QKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD--CYPAVQKTTLVIMERLQQVLQME-SHIQSTSDRIQFNDLQSLL 584 (876)
T ss_dssp HHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST--THHHHHHHHHHHHHHHHHHHTTT-TSCCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh--hHHHHHHHHHHHHHHHHHHHHHH-hccCChhhHHHHHHHHHHH
Confidence 88877655432 244677999999999998864 34688999998888887653211 00000012222122 2566
Q ss_pred HhHHHHHHhhhC-hhhHHHHHHHHHHHHHHHHHHH---HHHHHhHhcCCCCc--cchhhhHHHHHHHHHHHHHHHHHHhh
Q 036770 696 LQTNTSVASALG-TFFLSQISVIFLDMLNVYKMYS---ELISSSISSGGPFA--SKTSYVKLLRSVKRETLKLIETFLDK 769 (1061)
Q Consensus 696 l~~~~~i~~~~~-~~f~~~~~~i~~~ll~~y~~~~---~~i~~~~~~~g~~~--~~~~~~~~~~~~~~~il~ll~~~i~~ 769 (1061)
+.++..++.++| ..+.|+++.++|.++..++..+ .+-...+...|..+ .+..+...+. .+++.+...+..
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~----~~~~~l~~~l~~ 660 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME----AFKPFLGIGLKN 660 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHcC
Confidence 778888999999 8888888889998887766432 11011111000000 0000000010 111111111111
Q ss_pred CCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhch
Q 036770 770 AEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCF 849 (1061)
Q Consensus 770 ~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~ 849 (1061)
. ..+..| ...+.+++.++...|..+.++++.++.. .+..++.+ +.++++|......++.++..+.
T Consensus 661 ~---------~~~~vr-~~a~~~l~~l~~~~~~~~~~~~~~i~~~----l~~~l~~~-~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 661 Y---------AEYQVC-LAAVGLVGDLCRALQSNIIPFCDEVMQL----LLENLGNE-NVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp C---------TTHHHH-HHHHHHHHHHHHHHGGGGHHHHHHHHHH----HHHHHTCT-TSCGGGHHHHHHHHHHHHHHHG
T ss_pred c---------chHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHhCCc-cccHHhhHHHHHHHHHHHHHhc
Confidence 0 011122 2367888888888886555444444444 44444431 2457899999999999988765
Q ss_pred hHhhcCChHHHHHHHHHHHHHhcCCC----h-------hHHHHHHHHHHHHHHhcc
Q 036770 850 PALIRLSSQQLKLVMDSIIWAFRHTE----R-------NIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 850 ~~l~~~~~~~~~~~~~~i~~~~~~~~----~-------~i~~~~l~~l~~l~~~~~ 894 (1061)
..+.. .+..++..+..+++... . ++...+++.+..++...+
T Consensus 726 ~~~~~----~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~ 777 (876)
T 1qgr_A 726 GEFKK----YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLK 777 (876)
T ss_dssp GGGGG----GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH----HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55422 34555555555554431 1 344455666666655544
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.89 E-value=1.5e-21 Score=230.47 Aligned_cols=432 Identities=16% Similarity=0.208 Sum_probs=284.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhc--CcccHHHHHHHHccCC-ChHHHHHHHHHHHHHHhcc-----------cC
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQN--NPDMWLQVVHILQNSK-NLNTKFFALQVLEGVIKYR-----------WN 83 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~--s~~aw~~~~~iL~~s~-~~~~rffaa~~L~~~I~~~-----------w~ 83 (1061)
+.+++..+++| |++.|++|+++|+++++ .|+.|..+.+++.++. ++.+|.+|+.+|++.|+++ |.
T Consensus 3 l~~~L~~~~s~-d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~ 81 (462)
T 1ibr_B 3 LITILEKTVSP-DRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (462)
T ss_dssp HHHHHHHTTCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhh
Confidence 66788888877 77799999999999998 5899999999997653 7899999999999999876 68
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccC---ChhHHHHHH
Q 036770 84 ALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKT---SETICENCM 159 (1061)
Q Consensus 84 ~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~---~~~~~~~~L 159 (1061)
.++++.+..||+.+++.+.. .. ..+ ++++.+++.|+.++||. .||++++.+++.+++ ++..+..++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~--~~-------~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 82 AIDANARREVKNYVLQTLGT--ET-------YRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp TSCHHHHHHHHHHHHHHTTC--CC-------SSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC--CC-------chh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 89999999999999998754 11 225 88999999999999995 999999999998875 456788999
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHhcccccCcchh---cch
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ-RTDLIRATLSTLHAFLSWIPLGYI---FES 235 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~-~~~l~~~~L~~l~~~l~wi~~~~i---~~~ 235 (1061)
.+|..++++... .. +....+.++..+..++.... ++.++..+++|+.+++.++....- +.+
T Consensus 152 ~~l~~l~~~~~~---~~------------~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (462)
T 1ibr_B 152 EAIGYICQDIDP---EQ------------LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (462)
T ss_dssp HHHHHHHHHSCG---GG------------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHH
T ss_pred HHHHHHHHhCCc---hh------------hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999998521 11 12345678888888887654 688999999999998865431110 001
Q ss_pred hhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHH
Q 036770 236 PLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLAL 315 (1061)
Q Consensus 236 ~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~ 315 (1061)
.+++.+...+.+ .|.+.....++
T Consensus 217 ~l~~~l~~~~~~---------------------------------------------------------~~~~vr~~~~~ 239 (462)
T 1ibr_B 217 FIMQVVCEATQC---------------------------------------------------------PDTRVRVAALQ 239 (462)
T ss_dssp HHHHHHHHHTTC---------------------------------------------------------SSHHHHHHHHH
T ss_pred HHHHHHHHhcCC---------------------------------------------------------CCHHHHHHHHH
Confidence 123333322221 12223333444
Q ss_pred HHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCC
Q 036770 316 FFTSFFKFHIRVLESTQENI-SALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPL 394 (1061)
Q Consensus 316 l~~~~~~~~~~ile~~~~~~-~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~ 394 (1061)
.+..+++.+...+... .. .+ +..++.+....++++...+++||..+++.............. . +.
T Consensus 240 ~l~~l~~~~~~~~~~~--~~~~l----~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~-~---~~---- 305 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETY--MGPAL----FAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE-Q---GR---- 305 (462)
T ss_dssp HHHHHHHHCGGGCTTT--TTTTH----HHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC-S---SS----
T ss_pred HHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc-c---CC----
Confidence 4444444332222110 01 11 122333333456677888999999988764211000000000 0 00
Q ss_pred CchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHH
Q 036770 395 LPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHE 474 (1061)
Q Consensus 395 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~ 474 (1061)
+. . .....+.++++..+++.+++.|...++. +++ +++..+.....+|..++...++
T Consensus 306 -~~-~-------~~~~~~~~~~~~~l~p~l~~~l~~~d~d----~~~-----------~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 306 -PP-E-------HTSKFYAKGALQYLVPILTQTLTKQDEN----DDD-----------DDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp -CS-S-------CCCCCHHHHHHHHHHHHHHHHTTCCCSS----CCT-----------TCCSHHHHHHHHHHHHHHHTTT
T ss_pred -Cc-c-------chhHHHHHHHhhhccHHHHHHHHhcccc----ccc-----------ccchHHHHHHHHHHHHHHhccH
Confidence 00 0 0111234556778888888888654321 111 1122234555667776655456
Q ss_pred hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhcc
Q 036770 475 DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQ 554 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~ 554 (1061)
.+...+++.+...+. ..+|+..+++++++|++++...++.-..+++.+++.++....+ +...++...++++|+
T Consensus 362 ~~~~~~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-----~~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 362 DIVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-----PSVVVRDTAAWTVGR 434 (462)
T ss_dssp THHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-----SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Confidence 666667777766553 3579999999999999998654332234567788877776654 345666778899999
Q ss_pred chHHHHH---hHHHHHHHHHHHHHhh
Q 036770 555 YPRFLRA---HWKFLKTVVNKLFEFM 577 (1061)
Q Consensus 555 y~~~l~~---~~~~L~~vl~~L~~~~ 577 (1061)
+++++.. ++.+++++++.|+..+
T Consensus 435 ~~~~~~~~~~~~~~l~~ll~~Ll~~L 460 (462)
T 1ibr_B 435 ICELLPEAAINDVYLAPLLQCLIEGL 460 (462)
T ss_dssp HHHHGGGGCCSTTTHHHHHHHHHCC-
T ss_pred HHHhcccccccHHHHHHHHHHHHHHh
Confidence 9999976 4679999999988754
No 14
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.47 E-value=4.8e-10 Score=148.45 Aligned_cols=659 Identities=13% Similarity=0.129 Sum_probs=349.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCc------cc----HHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 16 ALLDATVAAFYGTGSKEERTAADQILRDLQNNP------DM----WLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 16 ~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~------~a----w~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
..+.+++..+.+| |+..|.+|.+-|.+.-+.+ .. ...+...|. +.+..+|..|+..|...+. .+
T Consensus 6 ~~l~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~----~~ 79 (1230)
T 1u6g_C 6 YHISNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS----KV 79 (1230)
T ss_dssp HHHHHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT----TS
T ss_pred hHHHHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH----hC
Confidence 4577778777666 7779999988777654433 11 222334443 5789999999999988775 36
Q ss_pred CHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC---------ccchhHHHHHHHcc--CChhH
Q 036770 86 PVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA---------RWRSFIPDLVAAAK--TSETI 154 (1061)
Q Consensus 86 ~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~---------~Wp~~i~~l~~~~~--~~~~~ 154 (1061)
+++....++..++..+. ++. ..+|...+.+++.++....|. .|+.+++.++..+. .+...
T Consensus 80 ~~~~~~~i~~~Ll~~l~----d~~-----~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 80 KEYQVETIVDTLCTNML----SDK-----EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp CHHHHHHHHHHHHHHTT----CSS-----SHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred CHHHHHHHHHHHHHHhc----CCc-----HHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHH
Confidence 77677777777776543 221 236888899999999887765 59999999999886 33566
Q ss_pred HHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcc
Q 036770 155 CENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFE 234 (1061)
Q Consensus 155 ~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~ 234 (1061)
...++.+|..+++...+ .+. ...+.++..+...+.. .++.++..+++|++.++...+-.. +
T Consensus 151 ~~~al~~l~~~~~~~~~----~l~------------~~~~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~~~-~- 211 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGG----LLV------------NFHPSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGNIV-F- 211 (1230)
T ss_dssp HHHHHHHHHHHHHHTCS----SCT------------TTHHHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC-----C-
T ss_pred HHHHHHHHHHHHHHhHh----HHH------------HHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCHHH-H-
Confidence 77788888888875432 121 1335566666666653 456788899999999887665432 2
Q ss_pred hhhHHHHHhhCC---CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 SPLLETLLKFFP---MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ~~ll~~l~~~L~---~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
+.+++.+...|. ++..|..+++|+..++... +..+..
T Consensus 212 ~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~-~~~~~~--------------------------------------- 251 (1230)
T 1u6g_C 212 VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GHRIGE--------------------------------------- 251 (1230)
T ss_dssp TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SGGGTT---------------------------------------
T ss_pred HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh-HHHHHH---------------------------------------
Confidence 245555554332 2345666666666665421 100000
Q ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCC
Q 036770 312 NLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLP 391 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~ 391 (1061)
....+ +..++.....+++++-..++..|..+.+.. +
T Consensus 252 ---------------------~l~~l----~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~-------~------------ 287 (1230)
T 1u6g_C 252 ---------------------YLEKI----IPLVVKFCNVDDDELREYCIQAFESFVRRC-------P------------ 287 (1230)
T ss_dssp ---------------------SCTTH----HHHHHHHHSSCCTTTHHHHHHHHHHHHHCT-------T------------
T ss_pred ---------------------HHHHH----HHHHHHHhcCCCHHHHHHHHHHHHHHHHHC-------h------------
Confidence 00001 122222222333444455555555554321 0
Q ss_pred CCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcC
Q 036770 392 MPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHL 471 (1061)
Q Consensus 392 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l 471 (1061)
..+.+++..+++.+++.|.++++.. .++|++. .+...+.. .
T Consensus 288 -------------------~~~~~~l~~li~~ll~~l~~d~~~~-~~~d~~~--~~~~~~~~-----------------~ 328 (1230)
T 1u6g_C 288 -------------------KEVYPHVSTIINICLKYLTYDPNYN-YDDEDED--ENAMDADG-----------------G 328 (1230)
T ss_dssp -------------------CCCHHHHHHHHHHHTTCCCCC----------------------------------------
T ss_pred -------------------HHHHHhHHHHHHHHHHHhCCCCCCC-Ccccccc--cccccccc-----------------c
Confidence 0135667888888888888755421 1111100 00000000 0
Q ss_pred CHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHH
Q 036770 472 DHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYV 551 (1061)
Q Consensus 472 ~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ 551 (1061)
.++.... .+... ......|....+++-+++.++.... +.-..++..+++.+........ ...+..+..++..+
T Consensus 329 -~~~~~~~-~~~~~---~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l 401 (1230)
T 1u6g_C 329 -DDDDQGS-DDEYS---DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKERE-ENVKADVFHAYLSL 401 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSS-SHHHHHHHHHHHHH
T ss_pred -ccchhhc-ccccc---cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 0000000 00000 1123578888888999999888654 2235667777776655442211 11111111112223
Q ss_pred hccch---HHHH-------------HhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHH
Q 036770 552 VGQYP---RFLR-------------AHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFV 615 (1061)
Q Consensus 552 ig~y~---~~l~-------------~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l 615 (1061)
++.+. .|.. .-..+++.+++.+...++++++.++..+|.++..++..|+..+. +++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~--------~~l 473 (1230)
T 1u6g_C 402 LKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT--------QHI 473 (1230)
T ss_dssp HHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG--------GGH
T ss_pred HHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH--------HHH
Confidence 32221 1111 11245666677666668888899999999999999998876554 377
Q ss_pred HHHHHhHHHhhhcCCc--chHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHH
Q 036770 616 SELLSGLATTVADLEP--HQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVL 693 (1061)
Q Consensus 616 ~~il~~l~~~~~~l~~--~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 693 (1061)
.+++..+.....+-.. ..+.....+++.++...+.... ..++..++..+...+ ++ .+... ..
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~l~~llp~L~~~l--------~d----~~~~v---~~ 537 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVF-HPHVQALVPPVVACV--------GD----PFYKI---TS 537 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGG-HHHHTTTHHHHHHHH--------TC----SSHHH---HH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHH-HhHHHHHHHHHHHHH--------cc----cchHH---HH
Confidence 8887777655443222 3455556666666655543322 346666655544322 11 12211 13
Q ss_pred HHHhHHHHHHhhhCh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 036770 694 NILQTNTSVASALGT-------FFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETF 766 (1061)
Q Consensus 694 ~il~~~~~i~~~~~~-------~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~ 766 (1061)
..+.++..+++.++. .+.|+++.++|.++..+... + ..+. +|...+..+..+
T Consensus 538 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~----------d-----~~~~------vr~~a~~~lg~L 596 (1230)
T 1u6g_C 538 EALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAA----------D-----IDQE------VKERAISCMGQI 596 (1230)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCS----------S-----SCHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhcc----------C-----CCHH------HHHHHHHHHHHH
Confidence 456666777777765 77888888888877654210 0 0000 111111111111
Q ss_pred HhhC----CC-----hhhhhhc-CCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHH
Q 036770 767 LDKA----ED-----QPQIGKQ-NVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLK 836 (1061)
Q Consensus 767 i~~~----~~-----~~~l~~~-~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~ 836 (1061)
+... .+ +..+... .....|. ..+..++.++... ....+..++..++......+. .+.+.+|.+
T Consensus 597 ~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~-~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~---~~~~~~r~~ 669 (1230)
T 1u6g_C 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRL-TTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLR---KNQRALKLG 669 (1230)
T ss_dssp HHHTGGGCCTHHHHHHHHHHHHTTSSSHHH-HHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTT---SCCHHHHHH
T ss_pred HHHhCchhhhhHHHHHHHHHHHhccchhHH-HHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHH---hCCHHHHHH
Confidence 1111 00 0000000 1111221 2344444443321 122334445444444333333 356889999
Q ss_pred HHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 837 FFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 837 ~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
....+.+++.++...+ +.+.+..++..+.-.+...+.+....++.++..++...
T Consensus 670 a~~al~~l~~~~~~~~---~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 670 TLSALDILIKNYSDSL---TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHCCTTC---CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcccccC---CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 9999999999876543 33445555544333344566777777888887776543
No 15
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.34 E-value=6.4e-09 Score=132.67 Aligned_cols=356 Identities=10% Similarity=0.072 Sum_probs=208.9
Q ss_pred ccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH--HhHHHHHHH
Q 036770 492 DWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR--AHWKFLKTV 569 (1061)
Q Consensus 492 ~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~--~~~~~L~~v 569 (1061)
..+|....++..+++.++....+ ..++.+++.+.....+ ....++...++.+|+...... ....+++.+
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~-----~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~ 409 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKN-----PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 409 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccC-----CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35798889999999999876542 2355666655544432 223333445668887665432 123478888
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCC
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAES 649 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~ 649 (1061)
++.++..+.++++.|+..|+.++.+++..+...+. ..+++..++..+-....+ ++.-+.....+++.++...+
T Consensus 410 l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~------~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 410 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI------NDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS------STTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcc------cHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhh
Confidence 99999988888999999999999999998876431 124777777776654433 34445666777777775432
Q ss_pred C------------HHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHH
Q 036770 650 D------------VQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717 (1061)
Q Consensus 650 ~------------~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i 717 (1061)
+ .+.-..++..++..+...+ . .... .+.. + -...+++++.+++..|..+.+.+..+
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l----~----~~~~-~~~~-~--r~~~~~~l~~l~~~~~~~~~~~~~~l 550 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSFELIVQKLLETT----D----RPDG-HQNN-L--RSSAYESLMEIVKNSAKDCYPAVQKT 550 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHT----T----SCSS-CSTT-H--HHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred hccccccccccccchhhhHhHHHHHHHHHHHH----h----CcCc-chhh-H--HHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 0 0000124444444333221 1 1000 0111 1 14566777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCC-C-----hh----h---hhhcCC--C
Q 036770 718 FLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAE-D-----QP----Q---IGKQNV--P 782 (1061)
Q Consensus 718 ~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~-~-----~~----~---l~~~~~--~ 782 (1061)
+|.+++.+..... .. .+......+ .....++..++..+..++.... . .. . +.+... +
T Consensus 551 ~~~l~~~l~~~~~-----~~-~~~~~~~d~--~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 622 (876)
T 1qgr_A 551 TLVIMERLQQVLQ-----ME-SHIQSTSDR--IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622 (876)
T ss_dssp HHHHHHHHHHHHT-----TT-TSCCSTTHH--HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHH-----HH-hccCChhhH--HHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCC
Confidence 8887766553200 00 000000000 0001122222233333332221 0 00 0 011010 1
Q ss_pred CcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHH
Q 036770 783 DARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKL 862 (1061)
Q Consensus 783 ~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~ 862 (1061)
.. ....+.+++.++...|..+.++++.++..+... +.+ .+++++|...+..+..++..+...+. ..+..
T Consensus 623 ~v-~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~----l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~ 691 (876)
T 1qgr_A 623 GV-QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIG----LKN--YAEYQVCLAAVGLVGDLCRALQSNII----PFCDE 691 (876)
T ss_dssp HH-HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH----HHH--CTTHHHHHHHHHHHHHHHHHHGGGGH----HHHHH
T ss_pred Cc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HcC--cchHHHHHHHHHHHHHHHHHHHHhhh----hhHHH
Confidence 11 235788999999988888888888776555533 333 25789999999999999987654332 24567
Q ss_pred HHHHHHHHhcC--CChhHHHHHHHHHHHHHHhcc
Q 036770 863 VMDSIIWAFRH--TERNIAETGLNLLLEMLKNFQ 894 (1061)
Q Consensus 863 ~~~~i~~~~~~--~~~~i~~~~l~~l~~l~~~~~ 894 (1061)
++..+...+.. .++++...++..+.++....+
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g 725 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIG 725 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhc
Confidence 77777777766 467888888998888887665
No 16
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.32 E-value=8.2e-08 Score=121.93 Aligned_cols=354 Identities=10% Similarity=0.143 Sum_probs=210.3
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVVN 571 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl~ 571 (1061)
.+|....++.-++|.++....+ ..++.+++.+..+..+ ....++...++.+|...+..... ..+++.+++
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~-----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~ 403 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFH-----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIP 403 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4688888888899998876542 3455566655554433 12223333555888876655432 247888999
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCH
Q 036770 572 KLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDV 651 (1061)
Q Consensus 572 ~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~ 651 (1061)
.++..+.++++.|+..|+.++.+++..+...... +|+..++..+-....+-++.-+.....|++.++...+..
T Consensus 404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-------~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-------TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999999999999999999999887653322 467777776665544445666788888999888665533
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhh--HHHHHHHHHHHHHHHHHHH
Q 036770 652 QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFF--LSQISVIFLDMLNVYKMYS 729 (1061)
Q Consensus 652 ~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f--~~~~~~i~~~ll~~y~~~~ 729 (1061)
. ..++..++..+...++ .. +.. ....++.++..++...|..+ .++++.++|.+++.+...
T Consensus 477 -l-~~~l~~ll~~L~~~l~----~~--------~~~---~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l- 538 (852)
T 4fdd_A 477 -L-VPYLAYILDTLVFAFS----KY--------QHK---NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML- 538 (852)
T ss_dssp -G-GGGHHHHHHHHHHHHH----HC--------CHH---HHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHS-
T ss_pred -h-HhHHHHHHHHHHHHHH----Hh--------ChH---HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhc-
Confidence 1 2355555554443322 11 211 22334556666666555443 223344444433322110
Q ss_pred HHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChH
Q 036770 730 ELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVP 809 (1061)
Q Consensus 730 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~ 809 (1061)
. +..+.. -.++.+++.++..+|..+.++++
T Consensus 539 -----------------------------------------~-------d~~~~~--~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 539 -----------------------------------------K-------DEDKDL--FPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp -----------------------------------------C-------TTCTTH--HHHHHHHHHHHHHHGGGGHHHHH
T ss_pred -----------------------------------------c-------cccHHH--HHHHHHHHHHHHHHhHhHHHHHH
Confidence 0 011111 24688888888888888777788
Q ss_pred HHHHHHHHHhHHhhh--------h-cc-CCChHhHHHHHHHHHHHHhhchhHhhcCChHHH--HHHHHHHHHHhcCCChh
Q 036770 810 RIFEAIFQCTLEMIT--------K-NF-EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQL--KLVMDSIIWAFRHTERN 877 (1061)
Q Consensus 810 ~i~~~l~~~tl~~i~--------~-~~-~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~ 877 (1061)
.++..++...-..+. . .+ ....+++.....+++.+++..-..+.. .+ ..++..+...+.++.++
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ----LVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHH----HHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHH----HhcCCcHHHHHHHHhCCCChh
Confidence 777765544333221 1 11 235678888899999998865443321 11 24566666777888899
Q ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHHH
Q 036770 878 IAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLV 941 (1061)
Q Consensus 878 i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td~~~~~~f~~~~~~L~~l~~~~ 941 (1061)
+...++..+.++....+.. +..|+..+++.+...+.+. .-..-...+..+++++..+
T Consensus 645 vr~~a~~~l~~l~~~~~~~------~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQH------VKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHh
Confidence 9999999999888666421 1223333444444444221 1111233455666655544
No 17
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.19 E-value=8.3e-06 Score=103.51 Aligned_cols=371 Identities=7% Similarity=0.063 Sum_probs=212.4
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH--HHhHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL--RAHWKFLKTVV 570 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l--~~~~~~L~~vl 570 (1061)
.+|....++..+++.++..+.+ ..++.+++.+.....+ .+.+ ++...++.+|...+.. +....+++.++
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~~---~~~~--~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNITA---DNWR--NREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTC---SSHH--HHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcCC---CChh--HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3587778889999998876542 2355566655554432 1222 2233445666654432 22245788889
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.++..+.++++.|+..|++++.+++..+..++.+ .+++..++..+-....+ ++.-+.....+++.++...++
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP------QQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT------TTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC------HHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhccc
Confidence 99999888889999999999999999988776532 13667777665544333 244455666777777665431
Q ss_pred ---HHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHH
Q 036770 651 ---VQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKM 727 (1061)
Q Consensus 651 ---~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~ 727 (1061)
... ..++..++..+... +.. .+ .++... ...+++++.++...+..+.+++..++|.+++.+..
T Consensus 487 ~~~~~l-~~~~~~il~~L~~~----l~~--~d----~~~~vr---~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 552 (861)
T 2bpt_A 487 ATPSPI-YNFYPALVDGLIGA----ANR--ID----NEFNAR---ASAFSALTTMVEYATDTVAETSASISTFVMDKLGQ 552 (861)
T ss_dssp SSSCGG-GGGHHHHHHHHHHH----HTC--SC----CGGGHH---HHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHH
T ss_pred ccchhh-HHHHHHHHHHHHHH----HhC--cC----cchHHH---HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHH
Confidence 111 13444444333221 110 01 112222 23455666677777777888888888887766553
Q ss_pred HHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCC-----hh-------hhhhcCCC-CcchHHHHHHHH
Q 036770 728 YSELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAED-----QP-------QIGKQNVP-DARESEVLSLFA 794 (1061)
Q Consensus 728 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~-----~~-------~l~~~~~~-~~r~~~~L~l~~ 794 (1061)
.-. ... + ....+-......++..++..+..++..... .. .+.+...+ ..| ...+.+++
T Consensus 553 ~~~-----~~~-~--i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~-~~~~~~l~ 623 (861)
T 2bpt_A 553 TMS-----VDE-N--QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIE-DDVFYAIS 623 (861)
T ss_dssp HTT-----SCG-G--GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTH-HHHHHHHH
T ss_pred HHh-----hhc-c--cCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHH-HHHHHHHH
Confidence 200 000 0 000000000011122222223222222211 00 01111111 122 35788889
Q ss_pred HHHHhhhccCCCChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCC
Q 036770 795 TIINKYKGAMIDDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHT 874 (1061)
Q Consensus 795 ~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~ 874 (1061)
.++...|..+.++++.++..++... + .+.|++|...+.++..++..+...+. ..+..++..+.-.+.++
T Consensus 624 ~l~~~~~~~~~~~l~~i~~~l~~~l----~---~~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~ 692 (861)
T 2bpt_A 624 ALAASLGKGFEKYLETFSPYLLKAL----N---QVDSPVSITAVGFIADISNSLEEDFR----RYSDAMMNVLAQMISNP 692 (861)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHHH----H---CTTSHHHHHHHHHHHHHHHHTGGGGH----HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHh----c---cccHHHHHHHHHHHHHHHHHhchhcc----chHHHHHHHHHHHhCCc
Confidence 9999988887777777777666543 2 35678999999999999887654331 24566777777777775
Q ss_pred C--hhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 036770 875 E--RNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLT 919 (1061)
Q Consensus 875 ~--~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~t 919 (1061)
+ +++...++..+..++...+. . +..|+..+++.++..+.
T Consensus 693 ~~~~~vr~~~~~~l~~l~~~~~~-~-----~~~~l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 693 NARRELKPAVLSVFGDIASNIGA-D-----FIPYLNDIMALCVAAQN 733 (861)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHGG-G-----GHHHHHHHHHHHHHHHT
T ss_pred cccHhhhHHHHHHHHHHHHHhhh-h-----HHHHHHHHHHHHHHHHh
Confidence 4 88989999999998877652 1 23445556666666554
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.77 E-value=9.1e-06 Score=98.13 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=92.9
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNK 572 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~ 572 (1061)
.+|+...+++.++|.++..+.++. +.+.+++.++.+..+ ....++...+..+|...+-+...+ +++.+++.
T Consensus 414 ~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~llp~ 484 (588)
T 1b3u_A 414 AKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVD-----HVYAIREAATSNLKKLVEKFGKEW-AHATIIPK 484 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHHHHCHHH-HHHHTHHH
T ss_pred CCchHHHHHHHHHHHHHHHcCHHH---HHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHHhCchh-HHHHHHHH
Confidence 579999999999999987654331 223456666655443 223333334456666655544322 45677777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 573 LFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.....+++..++..|+.++..++..|.... |...++..+.....+-.+.-|....+++|.+....+.
T Consensus 485 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDI----------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH----------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7777777788999999999999999876532 4455555555444444566788899999999987764
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.74 E-value=2.4e-05 Score=94.35 Aligned_cols=489 Identities=10% Similarity=0.017 Sum_probs=263.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc---cHHHHHHHH---ccCCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPD---MWLQVVHIL---QNSKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~---aw~~~~~iL---~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
.+..++..+.+..++..|..|-+.|.++-..-. .+.....++ ..+.+..+|..|+.++..... .++...
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~----~~~~~~- 161 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP----RVSSAV- 161 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT----TSCHHH-
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH----hcCHHH-
Confidence 344444445444577788889888888766321 232222222 245577888888888877544 355443
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC-ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA-RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~-~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
++.++..+.....++ ...+|...+.+++.++...-+. .++..++.+...++.. ...+...+..|..+.+.
T Consensus 162 ---~~~l~~~l~~l~~d~-----~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 162 ---KAELRQYFRNLCSDD-----TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp ---HHHHHHHHHHHHTCS-----CHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 445555555444443 2457888889999888764322 2466777777766543 45556667777777664
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCC-
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPM- 247 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~- 247 (1061)
+.+ . ...+.++..+...++ ..+..++..+.++++......+.+ ...+.+++.+...+.+
T Consensus 234 ~~~--------~----------~~~~~~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~ 293 (588)
T 1b3u_A 234 LPQ--------E----------DLEALVMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLMKDC 293 (588)
T ss_dssp SCH--------H----------HHHHHTHHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHHTCS
T ss_pred CCH--------H----------HHHHHHHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHHHhCCC
Confidence 211 0 012344555555554 355678889999998887655433 2335678888887765
Q ss_pred -ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036770 248 -PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIR 326 (1061)
Q Consensus 248 -~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ 326 (1061)
+.+|..|+.+|..++..-.+ .... ......++..+..++. +.+.......+..+..++.....
T Consensus 294 ~~~vr~~a~~~l~~~~~~~~~-~~~~--~~~~~~l~p~l~~~l~-------------d~~~~vR~~a~~~l~~l~~~~~~ 357 (588)
T 1b3u_A 294 EAEVRAAASHKVKEFCENLSA-DCRE--NVIMSQILPCIKELVS-------------DANQHVKSALASVIMGLSPILGK 357 (588)
T ss_dssp SHHHHHHHHHHHHHHHHTSCT-TTHH--HHHHHTHHHHHHHHHT-------------CSCHHHHHHHHTTGGGGHHHHCH
T ss_pred cHHHHHHHHHHHHHHHHHhCh-hhhh--hHHHHHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhhH
Confidence 46899999999998874222 1110 0011112222211111 12223444444444333332100
Q ss_pred HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhh
Q 036770 327 VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQL 406 (1061)
Q Consensus 327 ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~ 406 (1061)
+ ......+..++.+...+++++-..++..+..+...+.
T Consensus 358 ------~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~---------------------------------- 395 (588)
T 1b3u_A 358 ------D--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG---------------------------------- 395 (588)
T ss_dssp ------H--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC----------------------------------
T ss_pred ------h--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC----------------------------------
Confidence 0 0001112333344344455665556655555543210
Q ss_pred hhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhc-CCHHhHHHHHHHHHH
Q 036770 407 LQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSH-LDHEDTEKQMLKKLS 485 (1061)
Q Consensus 407 ~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~-l~~~~~~~~i~~~L~ 485 (1061)
.. .....+++.+..-+. |..-.+|. ..-.++..++. +..+.....+.+.+.
T Consensus 396 ~~------~~~~~~lp~l~~~~~----------d~~~~vr~------------~~~~~l~~l~~~~~~~~~~~~l~~~l~ 447 (588)
T 1b3u_A 396 IR------QLSQSLLPAIVELAE----------DAKWRVRL------------AIIEYMPLLAGQLGVEFFDEKLNSLCM 447 (588)
T ss_dssp HH------HHHHHHHHHHHHHHT----------CSSHHHHH------------HHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HH------HHHHHHHHHHHHHhc----------CCCchHHH------------HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 00 011222333332221 11111111 11122222211 111111122333343
Q ss_pred hhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHH
Q 036770 486 KQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKF 565 (1061)
Q Consensus 486 ~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~ 565 (1061)
..+. ..+|...++++.++|.++..+.++ .++..+++.|..+..+ ....++.+.++++|...+.+... .+
T Consensus 448 ~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~-~~ 516 (588)
T 1b3u_A 448 AWLV--DHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQD-IT 516 (588)
T ss_dssp HGGG--CSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHhc--CCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHH-HH
Confidence 3332 235777889999999998776543 2456667766655432 33344555677888888776543 37
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 566 LKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 566 L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
++.+++.++..+.++.+.|+..|+.++.++++.++..+.. ..++..+.....+-+.+-|....+|++.+-
T Consensus 517 ~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----------~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----------SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----------HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----------HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7888888888888888999999999999999765443321 233344444444555666777777877654
No 20
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.60 E-value=0.00041 Score=91.57 Aligned_cols=659 Identities=12% Similarity=0.115 Sum_probs=315.3
Q ss_pred CCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCC----c
Q 036770 61 SKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPA----R 136 (1061)
Q Consensus 61 s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~----~ 136 (1061)
+.+..+|.-+...|...+...-..+. .....+-..+++.+ .++.. ...++-..+..++.++...-|+ .
T Consensus 445 ~~~~~vr~~~~~~L~~l~~~~~~~l~-~~l~~ll~~l~~~L----~d~~~---~~~v~~~a~~~l~~~~~~~~~~~~~~~ 516 (1230)
T 1u6g_C 445 EKSVKTRQCCFNMLTELVNVLPGALT-QHIPVLVPGIIFSL----NDKSS---SSNLKIDALSCLYVILCNHSPQVFHPH 516 (1230)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSTTTTG-GGHHHHHHHHHHHT----TCSSS---CHHHHHHHHHHHHHHHHSSCGGGGHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHchhhhH-HHHHHHHHHHHHHH----cCCCC---cchHHHHHHHHHHHHHHhCCHHHHHhH
Confidence 45678888888888887775322332 22233333333333 33211 1235556667777776544343 4
Q ss_pred cchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHH
Q 036770 137 WRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSA-SQRTDLIR 214 (1061)
Q Consensus 137 Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~-~~~~~l~~ 214 (1061)
++.+++.++..++.. ...+...+..+..+.+-+....... . ..+....+.++..+...+.. ..+++++.
T Consensus 517 l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~-~--------~~~~~~~~~ll~~ll~~l~~~d~~~~vr~ 587 (1230)
T 1u6g_C 517 VQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPS-S--------FDATPYIKDLFTCTIKRLKAADIDQEVKE 587 (1230)
T ss_dssp HTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCC-C--------CCCHHHHHHHHHHHHHHHSCSSSCHHHHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccccc-c--------cchHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 677888888776543 2334456667776666543210000 0 01123566777777777753 35678889
Q ss_pred HHHHHHHhcccccCcchhcc--hhhHHHHHhhCCCccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCC
Q 036770 215 ATLSTLHAFLSWIPLGYIFE--SPLLETLLKFFPMPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPT 292 (1061)
Q Consensus 215 ~~L~~l~~~l~wi~~~~i~~--~~ll~~l~~~L~~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~ 292 (1061)
.++.|++..+...... +.. +.+++.+...+.++..|..++.++..++....+..... .+..++..+...+.
T Consensus 588 ~a~~~lg~L~~~~g~~-~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~----~~~~i~~~L~~~l~-- 660 (1230)
T 1u6g_C 588 RAISCMGQIICNLGDN-LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP----VLGEGVPILASFLR-- 660 (1230)
T ss_dssp HHHHHHHHHHHHTGGG-CCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHH----HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCch-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHH----HHHHHHHHHHHHHH--
Confidence 9999999877644322 111 57788888888888889999999999886322212222 22223333333221
Q ss_pred CChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHH
Q 036770 293 TNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 293 ~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~ 372 (1061)
+++.....+.+..+..++..+...+. .+.+...+..++.+..-+|.++...+++.|..+.+..-
T Consensus 661 -----------~~~~~~r~~a~~al~~l~~~~~~~~~-----~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~ 724 (1230)
T 1u6g_C 661 -----------KNQRALKLGTLSALDILIKNYSDSLT-----AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724 (1230)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHHHCCTTCC-----HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCG
T ss_pred -----------hCCHHHHHHHHHHHHHHHhcccccCC-----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCc
Confidence 12334455555566555555422111 12222222222233233466677788888887763210
Q ss_pred HHhccCCCcccccccCCCCCCCCchhhhhhhhhhhh-hhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcc
Q 036770 373 DAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQ-RRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKD 451 (1061)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~-~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d 451 (1061)
... .+.... ..|..+..... .. ...... .+..+...+......+.... +.+.....+
T Consensus 725 ~~~---------~~~~~~---~l~~~~~~l~~--~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~-------~ll~~l~~~ 782 (1230)
T 1u6g_C 725 SSL---------SKISGS---ILNELIGLVRS--PLLQGGALS-AMLDFFQALVVTGTNNLGYM-------DLLRMLTGP 782 (1230)
T ss_dssp GGG---------GGTTTT---THHHHHHHHTC--TTCCHHHHH-HHHHHHHHHHTTCCTTCSHH-------HHHHHHSTT
T ss_pred hhH---------HHhHHh---HHHHHHHHHcC--cccchHHHH-HHHHHHHHHHhcCCCCCCHH-------HHHHHHhcc
Confidence 000 000000 00000000000 00 000001 11122222222110000000 000000000
Q ss_pred -----h--hhHHHHHHHHHHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCC--CChhHHhHHHH
Q 036770 452 -----N--DVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGS--MMEEQENRFLV 522 (1061)
Q Consensus 452 -----~--~~~~ly~~~~~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~--~~~~~e~~~l~ 522 (1061)
. .....+.....++-.++...+.... .+++.+-..+.++..+......+|+++|.++.. +.+. +
T Consensus 783 ~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~------~ 855 (1230)
T 1u6g_C 783 VYSQSTALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ------L 855 (1230)
T ss_dssp TTTC----CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC------T
T ss_pred ccCCCCccccchhhHHHHHHHHHHHHhcchhhH-HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCccc------c
Confidence 0 0001122223333332211111111 122222222211111222233457788877542 2211 2
Q ss_pred HHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhc
Q 036770 523 MVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRK 602 (1061)
Q Consensus 523 ~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~ 602 (1061)
++++.+....... + ..++....+.+|... ..+ ++.++..++..+... ++.+..+..++..+...+.
T Consensus 856 ~l~~~~~~~l~~~----~-~~Vr~aAa~aLg~l~---~~~---~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~-- 921 (1230)
T 1u6g_C 856 ELKSVILEAFSSP----S-EEVKSAASYALGSIS---VGN---LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSAS-- 921 (1230)
T ss_dssp HHHHHHHHGGGCS----C-HHHHHHHHHHHHHHH---HHT---HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSC--
T ss_pred cHHHHHHHHhCCC----C-HHHHHHHHHHhHHHh---ccC---HHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCC--
Confidence 2334444443331 2 223333445677653 223 223344455544433 5678888888888876432
Q ss_pred ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccc
Q 036770 603 FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDF 682 (1061)
Q Consensus 603 l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~ 682 (1061)
.....||+.+|...+....+.-+...+...-+++|.++...+. .++..+...+. +
T Consensus 922 -----~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~-----~l~p~l~~~l~------------~--- 976 (1230)
T 1u6g_C 922 -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE-----TLLPRLKGYLI------------S--- 976 (1230)
T ss_dssp -----STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG-----GTHHHHTTTSS------------S---
T ss_pred -----hhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccChH-----HHHHHHHHHhc------------C---
Confidence 1234578888887775544433444577888899998877552 13333322111 1
Q ss_pred cCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCccchhhhHHHHHHHHHHHHH
Q 036770 683 LKDQDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYKMYSELISSSISSGGPFASKTSYVKLLRSVKRETLKL 762 (1061)
Q Consensus 683 ~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~l 762 (1061)
.++.........++ .++...+..+.+++..+++.++
T Consensus 977 -~~~~~R~~~~~~l~---~~~~~~~~~~~~~l~~~~~~ll---------------------------------------- 1012 (1230)
T 1u6g_C 977 -GSSYARSSVVTAVK---FTISDHPQPIDPLLKNCIGDFL---------------------------------------- 1012 (1230)
T ss_dssp -SCHHHHHHHHHHTG---GGCCSSCCTHHHHHHHHSTTTH----------------------------------------
T ss_pred -CCHHHHHHHHHHHH---HHHccCchhhHHHHHHHHHHHH----------------------------------------
Confidence 12221111111111 1112222222222222222111
Q ss_pred HHHHHhhCCChhhhhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHhHHhhhhcc-------------CC
Q 036770 763 IETFLDKAEDQPQIGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRIFEAIFQCTLEMITKNF-------------ED 829 (1061)
Q Consensus 763 l~~~i~~~~~~~~l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i~~~l~~~tl~~i~~~~-------------~~ 829 (1061)
..+ .+..+..| -..++.++.+++.-+..+.+.++.++..++..+. +.+++ ++
T Consensus 1013 -----~~l-------~d~~~~vr-~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~--~~~~~~~~v~~gp~k~~vd~ 1077 (1230)
T 1u6g_C 1013 -----KTL-------EDPDLNVR-RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK--VRKELIREVEMGPFKHTVDD 1077 (1230)
T ss_dssp -----HHH-------SSSSTHHH-HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTS--CCGGGEEEEEETTEEEEEET
T ss_pred -----Hhc-------CCCcHHHH-HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhc--ccHHhheeeccCCcccccCC
Confidence 111 00111111 2356777777777666666777777777765532 11111 23
Q ss_pred ChHhHHHHHHHHHHHHhhchhHhhcCChHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHhc
Q 036770 830 YPEHRLKFFSLLRAIATHCFPALIRLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNF 893 (1061)
Q Consensus 830 ~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~ 893 (1061)
.-|.|++-|+.+..++.+|+..+ .+..++..+..|++. +.++.-.|..++.++++..
T Consensus 1078 ~l~~rk~a~~~~~~ll~~~~~~i------~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~ 1134 (1230)
T 1u6g_C 1078 GLDIRKAAFECMYTLLDSCLDRL------DIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLC 1134 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSSS------CHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcC
Confidence 34899999999999999986654 266788888899988 4899999999999997664
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.67 E-value=0.022 Score=65.58 Aligned_cols=366 Identities=8% Similarity=0.063 Sum_probs=181.3
Q ss_pred Cccchh---HHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH
Q 036770 135 ARWRSF---IPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRT 210 (1061)
Q Consensus 135 ~~Wp~~---i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~ 210 (1061)
..|++. ++.+++.++++ +..+...+..|+.+... ...... + ..+.. +.++..+...|....++
T Consensus 13 ~~w~~~~~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~~----~----~~~~~--~~~i~~L~~~L~~~~~~ 79 (450)
T 2jdq_A 13 MEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPPI----D----EVIST--PGVVARFVEFLKRKENC 79 (450)
T ss_dssp ---------CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCCH----H----HHHTS--TTHHHHHHHHHTCTTCH
T ss_pred HhhccccccHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCcH----H----HHHHc--CCcHHHHHHHHCCCCCH
Confidence 478877 88888877654 45667777777765431 001111 0 11110 13556666667655478
Q ss_pred HHHHHHHHHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHH
Q 036770 211 DLIRATLSTLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQ 286 (1061)
Q Consensus 211 ~l~~~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~ 286 (1061)
.+...+..++......-+ ...+.+...++.++.+|.+ +.+|..|+.+|..+..... .....+.. .+.+..+.
T Consensus 80 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~--~~~~~~~~--~~~i~~L~ 155 (450)
T 2jdq_A 80 TLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST--MCRDYVLD--CNILPPLL 155 (450)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH--HHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH--HHHHHHHH--CCCHHHHH
Confidence 888899999988765321 1124456788999988874 5789999999999987421 11111110 12233332
Q ss_pred hhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHH
Q 036770 287 TILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNS 366 (1061)
Q Consensus 287 ~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~ 366 (1061)
.++.. +.+.+.....+..+..++.... +......+..++..|+.+...+|.++...+......
T Consensus 156 ~~l~~------------~~~~~v~~~a~~~L~~l~~~~~-----~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 218 (450)
T 2jdq_A 156 QLFSK------------QNRLTMTRNAVWALSNLCRGKS-----PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSY 218 (450)
T ss_dssp HHTTS------------CCCHHHHHHHHHHHHHHHCCSS-----SCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhcC------------CCCHHHHHHHHHHHHHHhCCCC-----CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 33311 1234555665666665553210 000000111223555555555666655554433333
Q ss_pred HHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHH
Q 036770 367 FVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVR 446 (1061)
Q Consensus 367 l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~ 446 (1061)
+...- + .....+.. ..+++.++..+..++ ..++
T Consensus 219 l~~~~------------------------~----------~~~~~~~~---~~~i~~L~~ll~~~~----------~~v~ 251 (450)
T 2jdq_A 219 LSDGP------------------------N----------DKIQAVID---AGVCRRLVELLMHND----------YKVV 251 (450)
T ss_dssp HTSSS------------------------H----------HHHHHHHH---TTTHHHHHHHTTCSC----------HHHH
T ss_pred HHCCC------------------------c----------HHHHHHHH---cCcHHHHHHHHCCCc----------hhHH
Confidence 32100 0 00000100 112333444443221 1111
Q ss_pred hhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-
Q 036770 447 ETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL- 521 (1061)
Q Consensus 447 e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l- 521 (1061)
. ..-.+|..++.-+...... -+++.|-..+.. .+|.....++|++|.++..-.+. -..++
T Consensus 252 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~ 316 (450)
T 2jdq_A 252 S------------PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQ-IQTVID 316 (450)
T ss_dssp H------------HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHH-HHHHHH
T ss_pred H------------HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 1 1122333333322211110 122333333322 36788889999999998643222 12222
Q ss_pred HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-HHhHH-HH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 522 VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-RAHWK-FL-KTVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 522 ~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-~~~~~-~L-~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..+++.|+.+..+ ....++...++++++.+... ..+-. ++ ..+++.|++.+...++.|+..|+.++..++..
T Consensus 317 ~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 317 ANIFPALISILQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp TTHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2455666665543 12334444667887765431 11112 22 24777888878777899999999999999987
Q ss_pred hhh
Q 036770 599 CKR 601 (1061)
Q Consensus 599 c~~ 601 (1061)
+..
T Consensus 392 ~~~ 394 (450)
T 2jdq_A 392 GEQ 394 (450)
T ss_dssp HHH
T ss_pred chh
Confidence 764
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.61 E-value=0.059 Score=64.62 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=78.3
Q ss_pred hCCCCHHHHHHHHHHHHHHhc-CcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Q 036770 26 YGTGSKEERTAADQILRDLQN-NPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVI 101 (1061)
Q Consensus 26 y~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l 101 (1061)
.+.++...|+.+.-++..+-+ .|+.-..+...+. .++|+.+|-.|+.+|-+.. .++-... ++..+
T Consensus 58 ~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~----l~~~l 126 (591)
T 2vgl_B 58 MQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEY----LCEPL 126 (591)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHH----HHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHH----HHHHH
Confidence 344467777777777777655 4554333333332 3467788888877665432 2333333 33333
Q ss_pred HHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 102 VQLSSNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 102 ~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
.+...++ ..+||.+.+.++..++... |+.++ .+++.+...+... +..+..++..|..++++
T Consensus 127 ~~~L~d~-----~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 127 RKCLKDE-----DPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHSSCS-----CHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCC-----ChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 3333332 4789999999999999854 88887 4888888888753 45566677777766553
No 23
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.61 E-value=0.37 Score=61.50 Aligned_cols=313 Identities=12% Similarity=0.058 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhhhc-----CChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh-cCCcchHHHH
Q 036770 564 KFLKTVVNKLFEFMHE-----THPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA-DLEPHQIHTF 637 (1061)
Q Consensus 564 ~~L~~vl~~L~~~~~~-----~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~-~l~~~~~~~l 637 (1061)
+.++.+++++-+.+.. .+...++.|..++..+++.|..... +++.++++.+..+.. +-.+.-+...
T Consensus 455 ~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~--------~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 455 YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK--------RQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh--------HHHHHHHHHHHhcCccccCHHHHHHH
Confidence 3455555555554432 4567889999999999988876442 367777775544331 1234446677
Q ss_pred HHHHhhhhccCCCHHHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChhhHHHHHHH
Q 036770 638 YESVGHMIQAESDVQKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTFFLSQISVI 717 (1061)
Q Consensus 638 ~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i 717 (1061)
+.++|......... .+++..++..+...++ +. +....+..+ ..+|+..+....|+++.+
T Consensus 527 ~~~l~~~~~~l~~~---~~~l~~vl~~l~~~l~---------~~------v~~~A~~al---~~l~~~~~~~l~p~~~~l 585 (971)
T 2x1g_F 527 LETMGSYCNWLMEN---PAYIPPAINLLVRGLN---------SS------MSAQATLGL---KELCRDCQLQLKPYADPL 585 (971)
T ss_dssp HHHHHHTHHHHC-------CHHHHHHHHHHHHH---------SS------CHHHHHHHH---HHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHhC---------hH------HHHHHHHHH---HHHHHHHHHhccccHHHH
Confidence 78888776554432 2455655555444331 10 111233333 344555555556666655
Q ss_pred HHHHHHHHHH--HH-HHHHHhHhcCCCCccchhhhHHHHHHHHHHHHHHHHHHhhCCChhhhhhcCC-CC-c--chHHHH
Q 036770 718 FLDMLNVYKM--YS-ELISSSISSGGPFASKTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQNV-PD-A--RESEVL 790 (1061)
Q Consensus 718 ~~~ll~~y~~--~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~l~~~~~-~~-~--r~~~~L 790 (1061)
+..+.++... .. +.....+...|..+...+.......+.+-+-+++..+.. +.+... .. . .....+
T Consensus 586 l~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~~~~~~~~~~~l 658 (971)
T 2x1g_F 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQA-------ICQADSKTPAARIRTIFRL 658 (971)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-------HHTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCChhhHHHHHHHH
Confidence 5554444332 00 000000111111000000000001111111111111111 111110 00 1 123467
Q ss_pred HHHHHHHHhhhccCC---------CChHHHHHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhchhHhhcCChHHHH
Q 036770 791 SLFATIINKYKGAMI---------DDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSQQLK 861 (1061)
Q Consensus 791 ~l~~~li~~~~~~~~---------~~l~~i~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~ 861 (1061)
.+++.++..++.... +.+.++.+.++..+..++. +..+.+++....+.++++++...-..+ .| .+.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~-~~~~~~~v~e~~~~~~~~~~~~~~~~~--~p--~l~ 733 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAE-MWVEEIDVLEAACSAMKHAITNLRSSF--QP--MLQ 733 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHHHHHC----CT--HHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhhhhhc--cc--cHH
Confidence 888888877765321 2334445544444334433 234577899999999999887644433 12 467
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcc
Q 036770 862 LVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQASEFCNQFYRTYFVTIEQEIFAVLTD 920 (1061)
Q Consensus 862 ~~~~~i~~~~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~f~~~~~~~~~~~~~~~~td 920 (1061)
.+++.+..++..++. ...+..+..++...+...........++..++..++..+..
T Consensus 734 ~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 789 (971)
T 2x1g_F 734 DLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFES 789 (971)
T ss_dssp HHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777766432 23667777777666542222233344455556666665543
No 24
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.59 E-value=0.087 Score=67.25 Aligned_cols=156 Identities=10% Similarity=0.114 Sum_probs=101.4
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-----------HH-h
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-----------RA-H 562 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-----------~~-~ 562 (1061)
..-.-++||++|.+++.+. .+++..+++.+++...+ +..+|+...++.+.++.+-. +. -
T Consensus 472 p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-----~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l 542 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-----DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDI 542 (960)
T ss_dssp HHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGT
T ss_pred ceehHHHHHHHHHHHhhCC----HHHHHHHHHHHHHHhCC-----CChhHHHHHHHHHHHHHhcccccccccccccHHHh
Confidence 3445678999999998874 24677777777765432 23444555666666644321 11 1
Q ss_pred HHHHHHHHHHHHHhhhcC---Chh--HHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcC-----Ccc
Q 036770 563 WKFLKTVVNKLFEFMHET---HPG--VQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADL-----EPH 632 (1061)
Q Consensus 563 ~~~L~~vl~~L~~~~~~~---~~~--v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l-----~~~ 632 (1061)
..|++++++.|+..+... .++ ..+.+..++.+++..++..+.+ |+..++..+..+.... +..
T Consensus 543 ~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p--------~~~~l~~~L~~~l~~~~~~~~~~~ 614 (960)
T 1wa5_C 543 SNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP--------LFPQLLAQFIEIVTIMAKNPSNPR 614 (960)
T ss_dssp TTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG--------GHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred hhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHHHHHhCCCCcH
Confidence 357899999999876553 122 4578999999999988877764 7788877666554322 223
Q ss_pred hHHHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHH
Q 036770 633 QIHTFYESVGHMIQAESDVQKREEYLQRLMLLPNQK 668 (1061)
Q Consensus 633 ~~~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~ 668 (1061)
-+..++|++|.++.+.+.+ ....+.+.++.++...
T Consensus 615 ~~~~~~e~l~~l~~~~~~~-~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 615 FTHYTFESIGAILNYTQRQ-NLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTSCGG-GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHH
Confidence 4567899999999984432 3345777777655443
No 25
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.56 E-value=0.014 Score=74.67 Aligned_cols=332 Identities=11% Similarity=0.132 Sum_probs=169.6
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVVNK 572 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl~~ 572 (1061)
+..-..++||++|+.+..+... ..+++.+++.++....+ + .++...++.+.++++=.+.+ ..|++.+++.
T Consensus 502 ~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~-----~--~V~~~A~~al~~l~~~~~~~l~p~~~~il~~ 572 (963)
T 2x19_B 502 NVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN-----P--ELSVSSVSTLKKICRECKYDLPPYAANIVAV 572 (963)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC-----G--GGHHHHHHHHHHHHHHTGGGCTTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC-----c--hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445678999999999765432 36788888877764432 1 22333444555444322111 2467888888
Q ss_pred HHHhhhc--CChhHHHHHHHHHHHHHHHhh-hcccccccCCCchHHHHHHHhHHHh----hhc-CCcch---HHHHHHHH
Q 036770 573 LFEFMHE--THPGVQDMACDTFLKIVQKCK-RKFVIVQVGENEPFVSELLSGLATT----VAD-LEPHQ---IHTFYESV 641 (1061)
Q Consensus 573 L~~~~~~--~~~~v~~~A~~~f~~i~~~c~-~~l~~~~~~e~~p~l~~il~~l~~~----~~~-l~~~~---~~~l~eai 641 (1061)
++..+.. .....+..+..++..++.... ... .||+..++..+... ... .+++. ....++++
T Consensus 573 l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~--------~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 573 SQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI--------LKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH--------HHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8886653 245788889999999886442 222 24666666544432 211 22322 34677888
Q ss_pred hhhhccCCCH--------------------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHH
Q 036770 642 GHMIQAESDV--------------------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTS 701 (1061)
Q Consensus 642 g~li~~~~~~--------------------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~ 701 (1061)
+.++.++... ..-..+.+.++..+ ..+++... .+....+.+. +++.+
T Consensus 645 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~------~~~~v~e~~~---~~l~~ 711 (963)
T 2x19_B 645 SNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI----QKVLSKWL------NDAQVVEAVC---AIFEK 711 (963)
T ss_dssp HHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH----HHHHHHHT------TCHHHHHHHH---HHHHH
T ss_pred HHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH----HHHHHhcc------CchHHHHHHH---HHHHH
Confidence 8877776521 00122334443332 23333321 2444444444 45555
Q ss_pred HHhhhChhhHHHHHHHHHHHHHHHHHH-----HHHHHHhHhcCCCCc-cchhhhHHHHHHHHHHHHHHHHHHhhCCChhh
Q 036770 702 VASALGTFFLSQISVIFLDMLNVYKMY-----SELISSSISSGGPFA-SKTSYVKLLRSVKRETLKLIETFLDKAEDQPQ 775 (1061)
Q Consensus 702 i~~~~~~~f~~~~~~i~~~ll~~y~~~-----~~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~il~ll~~~i~~~~~~~~ 775 (1061)
++.++|..|.|+++.+.+.++..|+.. -..+...+...|... ........+..+-..+++++. +...
T Consensus 712 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~---~~~~---- 784 (963)
T 2x19_B 712 SVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQ---QGPR---- 784 (963)
T ss_dssp HHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHH---HCTT----
T ss_pred HHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHh---hCcc----
Confidence 667777777777777777776666641 111111112111110 010111111212111222221 1010
Q ss_pred hhhcCCCCcchHHHHHHHHHHHHhhhccCCCChHHH-HHHHHHHhHHhhhhccCCChHhHHHHHHHHHHHHhhch--hHh
Q 036770 776 IGKQNVPDARESEVLSLFATIINKYKGAMIDDVPRI-FEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCF--PAL 852 (1061)
Q Consensus 776 l~~~~~~~~r~~~~L~l~~~li~~~~~~~~~~l~~i-~~~l~~~tl~~i~~~~~~~Pd~~~~~f~ll~~i~~~~~--~~l 852 (1061)
..|+.+ ..++.+++.++......+.+ ++. +..++.++...++ ..+++..+.-+.++..+++.+. ..+
T Consensus 785 ----~~pd~~-~~~f~ll~~~~~~~~~~~~~--~~~~~~~i~~~~~~~l~---~~~~~~~~~~l~~l~~l~~~~~~~~~~ 854 (963)
T 2x19_B 785 ----DHPDIV-DSFMQLLAQALKRKPDLFLC--ERLDVKAVFQCAVLALK---FPEAPTVKASCGFFTELLPRCGEVESV 854 (963)
T ss_dssp ----TCHHHH-HHHHHHHHHHHHHCGGGGGC--TTSCHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHGGGTTSSCHH
T ss_pred ----cCchHH-HHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHhcCCChHHH
Confidence 112211 35788889988777654421 222 4445555444443 3678999999999999987643 111
Q ss_pred hcCChHHHHHHHHHHHHHhc
Q 036770 853 IRLSSQQLKLVMDSIIWAFR 872 (1061)
Q Consensus 853 ~~~~~~~~~~~~~~i~~~~~ 872 (1061)
-..=.+.+..++..+..++.
T Consensus 855 ~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 855 GKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp HHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 00001234555555555554
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.54 E-value=0.03 Score=64.36 Aligned_cols=310 Identities=11% Similarity=0.059 Sum_probs=157.6
Q ss_pred HHHHHHHHhhcCcHHHHHHHHHHHHhccc--c-cCcchhcch-hhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcc
Q 036770 197 HELCLYVLSASQRTDLIRATLSTLHAFLS--W-IPLGYIFES-PLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDF 269 (1061)
Q Consensus 197 ~~~~~~~L~~~~~~~l~~~~L~~l~~~l~--w-i~~~~i~~~-~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~ 269 (1061)
+..+...+. +.++.++..++.++...++ + -+...++.. .+++.+...|.+ +.++..|+.+|..+......
T Consensus 22 l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-- 98 (450)
T 2jdq_A 22 TSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-- 98 (450)
T ss_dssp CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH--
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH--
Confidence 334444554 4567888899999988764 2 233444455 788988887764 46889999999999874211
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHH
Q 036770 270 YNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLIN 347 (1061)
Q Consensus 270 ~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~ 347 (1061)
....+. -.+.+..+..++. +.+.+....-+..+..++... +.....+. .++..++.
T Consensus 99 ~~~~~~--~~~~i~~L~~lL~-------------~~~~~vr~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~L~~ 156 (450)
T 2jdq_A 99 QTRIVI--QAGAVPIFIELLS-------------SEFEDVQEQAVWALGNIAGDS-------TMCRDYVLDCNILPPLLQ 156 (450)
T ss_dssp HHHHHH--HTTHHHHHHHHTT-------------CSCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCCCHHHHHHHHc-------------CCCHHHHHHHHHHHHHHccCC-------HHHHHHHHHCCCHHHHHH
Confidence 111111 1123333333331 124455555555555554421 11111111 12355555
Q ss_pred hhcc-ChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHH
Q 036770 348 ISYV-DETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMIC 426 (1061)
Q Consensus 348 ~~~~-~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~ 426 (1061)
+... ++.++...+...+..+... ..+. ........++. .++.
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~------~~~~---------------------------~~~~~~~~~l~----~L~~ 199 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRG------KSPP---------------------------PEFAKVSPCLN----VLSW 199 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCC------SSSC---------------------------CCGGGTGGGHH----HHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCC------CCCC---------------------------CCHHHHHHHHH----HHHH
Confidence 5553 4567777777666555421 0000 00111123333 3333
Q ss_pred hhCCCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHH
Q 036770 427 RMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLC 502 (1061)
Q Consensus 427 km~~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~ 502 (1061)
-+..+ + ..++ .....+|.+++.-.++.... -+.+.|-..+. ..+|...+.++
T Consensus 200 ~l~~~---------~-~~v~------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~ 255 (450)
T 2jdq_A 200 LLFVS---------D-TDVL------------ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPAL 255 (450)
T ss_dssp HTTCC---------C-HHHH------------HHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHH
T ss_pred HHccC---------C-HHHH------------HHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHH
Confidence 33211 1 1111 11223444444332211100 01222222222 34688889999
Q ss_pred HHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHH-HHHHHHHHHhhhc
Q 036770 503 WAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFL-KTVVNKLFEFMHE 579 (1061)
Q Consensus 503 ~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L-~~vl~~L~~~~~~ 579 (1061)
|++|.++...... ...++ ..+++.|+.+..+ +...++...++++|+.+..-..+. .++ ..+++.|+..+.+
T Consensus 256 ~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~-----~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~ 329 (450)
T 2jdq_A 256 RAVGNIVTGDDIQ-TQVILNCSALQSLLHLLSS-----PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT 329 (450)
T ss_dssp HHHHHHTTSCHHH-HHHHHTTTHHHHHHHHTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHhhCChHH-HHHHHHCccHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 9999998764321 11122 2366666666654 222334446667777654221111 122 2456667776667
Q ss_pred CChhHHHHHHHHHHHHHHH
Q 036770 580 THPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 580 ~~~~v~~~A~~~f~~i~~~ 598 (1061)
+++.|+..||.++..++..
T Consensus 330 ~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 330 AEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 7899999999999999975
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.50 E-value=0.019 Score=67.98 Aligned_cols=310 Identities=11% Similarity=0.037 Sum_probs=156.5
Q ss_pred HHHHHHHhhcCcHHHHHHHHHHHHhccccc---CcchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcchH
Q 036770 198 ELCLYVLSASQRTDLIRATLSTLHAFLSWI---PLGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDFYN 271 (1061)
Q Consensus 198 ~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi---~~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~~~ 271 (1061)
..+...|. +.++.+...++.++...++.- +...+++...++.++.+|.+ +.++..|+.+|..+.+... ...
T Consensus 90 ~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~--~~~ 166 (530)
T 1wa5_B 90 PQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS--AQT 166 (530)
T ss_dssp HHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH--HHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHH
Confidence 33444454 346788889999999887642 22345667889999988864 4689999999999987421 111
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHHhh
Q 036770 272 VQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLINIS 349 (1061)
Q Consensus 272 ~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~~~ 349 (1061)
..+.. .+.+..+..++ . +.+.+.....+..+..++... +.....+. .++..|+.+.
T Consensus 167 ~~~~~--~g~i~~Lv~lL------~-------~~~~~vr~~A~~aL~~l~~~~-------~~~~~~~~~~~~l~~L~~ll 224 (530)
T 1wa5_B 167 KVVVD--ADAVPLFIQLL------Y-------TGSVEVKEQAIWALGNVAGDS-------TDYRDYVLQCNAMEPILGLF 224 (530)
T ss_dssp HHHHH--TTCHHHHHHHH------H-------HCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHH--CCCHHHHHHHH------c-------CCCHHHHHHHHHHHHHHhCCC-------ccchHHHHHcCcHHHHHHHh
Confidence 11100 11122221111 0 123445555555655554321 11111110 2335555555
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhC
Q 036770 350 YVDETEVFKVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMA 429 (1061)
Q Consensus 350 ~~~d~ei~~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~ 429 (1061)
..++.++...++.....++.. . .| .... .+...+++.++.-+.
T Consensus 225 ~~~~~~v~~~a~~~L~~L~~~-------~------~~--------------------~~~~----~~~~~~l~~L~~lL~ 267 (530)
T 1wa5_B 225 NSNKPSLIRTATWTLSNLCRG-------K------KP--------------------QPDW----SVVSQALPTLAKLIY 267 (530)
T ss_dssp GSCCHHHHHHHHHHHHHHHCC-------S------SS--------------------CCCH----HHHGGGHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHhCC-------C------CC--------------------CCcH----HHHHhHHHHHHHHHc
Confidence 556666666666555554421 0 00 0000 011223334444332
Q ss_pred CCccccccccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHH
Q 036770 430 KPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAI 505 (1061)
Q Consensus 430 ~p~e~~~~~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~al 505 (1061)
.++ ..++ .....+|.+|+.-.++....+ +.+.|-..+. ..+|...+.++|++
T Consensus 268 ~~d----------~~v~------------~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 268 SMD----------TETL------------VDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAV 323 (530)
T ss_dssp CCC----------HHHH------------HHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHH
T ss_pred CCC----------HHHH------------HHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHH
Confidence 111 1111 122334444443322211111 1222333332 24688889999999
Q ss_pred HhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHHHHHHHhhhcCCh
Q 036770 506 GSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVVNKLFEFMHETHP 582 (1061)
Q Consensus 506 gsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl~~L~~~~~~~~~ 582 (1061)
|.++..-.... ..++ ..+++.|+.+..+. ...++...+++++..+..-..+.. ++ ..++..|+..+.++++
T Consensus 324 ~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~-----~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 324 GNIVTGNDLQT-QVVINAGVLPALRLLLSSP-----KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp HHHTTSCHHHH-HHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHH-HHHHHcchHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 99986533221 1222 24566666666542 233344456677776542211111 11 2356666666666788
Q ss_pred hHHHHHHHHHHHHHHHh
Q 036770 583 GVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 583 ~v~~~A~~~f~~i~~~c 599 (1061)
.++..|+.++..++..+
T Consensus 398 ~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 398 KTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999999864
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.35 E-value=0.052 Score=64.12 Aligned_cols=341 Identities=11% Similarity=0.053 Sum_probs=168.4
Q ss_pred cCcHHHHHHHHHHHHhcccccC---cchhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhcCcCCcchHHHHHHHHHH
Q 036770 207 SQRTDLIRATLSTLHAFLSWIP---LGYIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNV 280 (1061)
Q Consensus 207 ~~~~~l~~~~L~~l~~~l~wi~---~~~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~ 280 (1061)
+.++.+...++.++...++.-+ ...+++...++.+..+|.+ +.++..|+.||..+.+... .....+.. .+
T Consensus 85 s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~--~g 160 (528)
T 4b8j_A 85 SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS--ENTKVVID--HG 160 (528)
T ss_dssp SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH--HHHHHHHH--TT
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHh--CC
Confidence 3567788888888888766432 3455667889988888763 5789999999999987321 11111111 12
Q ss_pred HHHHHHhhCCCCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH--HHHHHHHHhh-ccChhhHH
Q 036770 281 FMVQLQTILPPTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALL--MGLEYLINIS-YVDETEVF 357 (1061)
Q Consensus 281 ~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~--~~l~~ll~~~-~~~d~ei~ 357 (1061)
.+..+..++. +.+.+.....+..+..++... +.....+. .++..|+.+. ..++.++.
T Consensus 161 ~i~~L~~lL~-------------~~~~~v~~~a~~aL~~l~~~~-------~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~ 220 (528)
T 4b8j_A 161 AVPIFVKLLG-------------SSSDDVREQAVWALGNVAGDS-------PKCRDLVLANGALLPLLAQLNEHTKLSML 220 (528)
T ss_dssp HHHHHHHHTT-------------CSCHHHHHHHHHHHHHHHHTC-------HHHHHHHHHTTCHHHHHHTCCTTCCHHHH
T ss_pred cHHHHHHHhc-------------CCCHHHHHHHHHHHHHHhCCC-------hhhHHHHHHCCcHHHHHHHHhcCCCHHHH
Confidence 3333333331 123445555555555554321 11111111 1345555555 34555665
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCcccccc
Q 036770 358 KVCLDYWNSFVLELFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIV 437 (1061)
Q Consensus 358 ~~~l~fW~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~ 437 (1061)
..+......++.. .+. ... .....+++.++.-+..++
T Consensus 221 ~~a~~~L~~L~~~-------~~~---------------------------~~~----~~~~~~l~~L~~lL~~~~----- 257 (528)
T 4b8j_A 221 RNATWTLSNFCRG-------KPQ---------------------------PSF----EQTRPALPALARLIHSND----- 257 (528)
T ss_dssp HHHHHHHHHHHCS-------SSC---------------------------CCH----HHHTTHHHHHHHHTTCCC-----
T ss_pred HHHHHHHHHHHcC-------CCC---------------------------CcH----HHHHHHHHHHHHHHCCCC-----
Confidence 5555444444311 010 000 111233444444442221
Q ss_pred ccCCchhHHhhhcchhhHHHHHHHHHHHHHHhcCCHHhHHHH----HHHHHHhhccCCccccchhhHHHHHHHhhhCCCC
Q 036770 438 EDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQ----MLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMM 513 (1061)
Q Consensus 438 ~~d~~e~~~e~~~d~~~~~ly~~~~~~L~~l~~l~~~~~~~~----i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~ 513 (1061)
.+ ++ .....+|.+++.-.......+ ..+.|-..+.. .++...+.++|++|.++..-.
T Consensus 258 ----~~-v~------------~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~ 318 (528)
T 4b8j_A 258 ----EE-VL------------TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDD 318 (528)
T ss_dssp ----HH-HH------------HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred ----HH-HH------------HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCH
Confidence 11 11 112334444443322211111 12233333322 356778889999999987543
Q ss_pred hhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHH-H-HHHHHHHHHhhhcCChhHHHHHHH
Q 036770 514 EEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKF-L-KTVVNKLFEFMHETHPGVQDMACD 590 (1061)
Q Consensus 514 ~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~-L-~~vl~~L~~~~~~~~~~v~~~A~~ 590 (1061)
... ..++ ..+++.|+.+..+. ....++...+++++..+..-..+-.. + ..++..|+..+...++.++..|+.
T Consensus 319 ~~~-~~~~~~~~l~~L~~lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 319 AQT-QCIIDHQALPCLLSLLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp HHH-HHHHTTTHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHH-HHHHHhhhHHHHHHHHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 221 1121 23456666655431 12334444667777765421111111 1 134566666666667899999999
Q ss_pred HHHHHHHHhh----hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccC
Q 036770 591 TFLKIVQKCK----RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAE 648 (1061)
Q Consensus 591 ~f~~i~~~c~----~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~ 648 (1061)
++..++.... ..+... ..+..++..+ ..-+.+.+....++++.++...
T Consensus 394 aL~nl~~~~~~~~~~~l~~~------~~i~~L~~lL----~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSE------GCIKPLCDLL----ICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHT------TCHHHHHHGG----GCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHC------CCHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHH
Confidence 9999997632 222210 0222233222 2234455666677777776543
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0016 Score=68.79 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=107.5
Q ss_pred ccchhhHHHHHHHhhhCCCC-hhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH--HHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMM-EEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW--KFLKTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~-~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~--~~L~~vl 570 (1061)
+....+++|.++|.++..+. +..+..|...+++.++..... .+..++..+.+.+..+........ .+|+.++
T Consensus 74 n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~d-----kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll 148 (249)
T 2qk1_A 74 NIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKE-----KKPSVIEAIRKALLTICKYYDPLASSGRNEDML 148 (249)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHccccccCCcHHHHH
Confidence 44556888999999998776 554337888999988876653 334444434444333332221000 2478899
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhh---cccccccCCCchHH-HHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKR---KFVIVQVGENEPFV-SELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~---~l~~~~~~e~~p~l-~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+.|+..+.+.++.++..|+.++.+++..++. .|. +++ .+++..+.....+-+..-|..-++++|.+..
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~--------~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQ--------RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHH--------HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHH--------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999998773 343 366 6777777776666677788999999999998
Q ss_pred cCCCHHHHHHHHHHH
Q 036770 647 AESDVQKREEYLQRL 661 (1061)
Q Consensus 647 ~~~~~~~~~~~l~~L 661 (1061)
.+++.... .++..|
T Consensus 221 ~vG~~~~~-p~l~~L 234 (249)
T 2qk1_A 221 IFGMNTFV-KTLEHL 234 (249)
T ss_dssp HHCSGGGH-HHHHHS
T ss_pred HhCHHHHH-HHHHHH
Confidence 88875432 344443
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.15 E-value=0.02 Score=66.16 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=84.7
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH---HHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW---KFLKTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~---~~L~~vl 570 (1061)
++...+.++.++|.+.+...++....++..+++.++....+. .+...++...+.+++....+++.+. .+...++
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~ 219 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE---EPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 677889999999999876543333456667777776655432 1022333334456655444444322 1222345
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHH-HHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVS-ELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~-~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
+.+.+...++++.++..++.+|..++..+...+.+ ++. .++..+-....+.+..-+...++.++.+..
T Consensus 220 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET--------YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTT--------TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 55555556677899999999999999998776654 333 444433333334444556666666666554
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.12 E-value=0.11 Score=61.30 Aligned_cols=363 Identities=11% Similarity=0.092 Sum_probs=180.0
Q ss_pred ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Q 036770 136 RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIR 214 (1061)
Q Consensus 136 ~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~ 214 (1061)
.|...++.++..++++ +......+..|+.+... ..... + ..+. -..++..+...|....++.+..
T Consensus 84 ~~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~~~~~----~-~~~~------~~g~i~~Lv~~L~~~~~~~v~~ 149 (530)
T 1wa5_B 84 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR---EHRPP----I-DVVI------QAGVVPRLVEFMRENQPEMLQL 149 (530)
T ss_dssp ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---SSSCS----H-HHHH------HTTCHHHHHHTTSTTSCHHHHH
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---CCCcc----H-HHHH------HCCCHHHHHHHhCCCCCHHHHH
Confidence 3666788888877764 34455566666654211 00111 1 1111 1234555556665544678888
Q ss_pred HHHHHHHhcccccC--cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCC
Q 036770 215 ATLSTLHAFLSWIP--LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILP 290 (1061)
Q Consensus 215 ~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~ 290 (1061)
.+..++......-+ ...+.+...++.+..+|. ++.++..|+.+|..+..... .+...+.. .+.+..+..++.
T Consensus 150 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~~~~~--~~~l~~L~~ll~ 225 (530)
T 1wa5_B 150 EAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST--DYRDYVLQ--CNAMEPILGLFN 225 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCH--HHHHHHHH--TTCHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCc--cchHHHHH--cCcHHHHHHHhc
Confidence 99999988775322 122444566777776664 66899999999999987421 11111110 122332322221
Q ss_pred CCCChhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHH
Q 036770 291 PTTNIPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLE 370 (1061)
Q Consensus 291 ~~~~l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~ 370 (1061)
+.+.+.....+..+..++... .+.........++..|+.+...++.++...++.....++..
T Consensus 226 -------------~~~~~v~~~a~~~L~~L~~~~-----~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 226 -------------SNKPSLIRTATWTLSNLCRGK-----KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp -------------SCCHHHHHHHHHHHHHHHCCS-----SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred -------------cCCHHHHHHHHHHHHHHhCCC-----CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 123455555555555554321 00000111223446666666666766666655444444311
Q ss_pred HHHHhccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhc
Q 036770 371 LFDAHNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMK 450 (1061)
Q Consensus 371 l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~ 450 (1061)
- + .....+.. ..+++.++..+..++ ..++.
T Consensus 288 ~------------------------~----------~~~~~~~~---~~~v~~Lv~lL~~~~----------~~v~~--- 317 (530)
T 1wa5_B 288 P------------------------Q----------EAIQAVID---VRIPKRLVELLSHES----------TLVQT--- 317 (530)
T ss_dssp C------------------------H----------HHHHHHHH---TTCHHHHHHGGGCSC----------HHHHH---
T ss_pred C------------------------H----------HHHHHHHh---cCcHHHHHHHHCCCC----------hhhHH---
Confidence 0 0 00111111 123334444443221 11111
Q ss_pred chhhHHHHHHHHHHHHHHhcCCHHhHHH----HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-HHHH
Q 036770 451 DNDVLVQYKIMRETLIYLSHLDHEDTEK----QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVI 525 (1061)
Q Consensus 451 d~~~~~ly~~~~~~L~~l~~l~~~~~~~----~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi 525 (1061)
..-.+|..++.-+...... -+++.|-..+.. .+|...+.++|++|.++..-. +.-..++ ..++
T Consensus 318 ---------~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l 385 (530)
T 1wa5_B 318 ---------PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAGNT-EQIQAVIDANLI 385 (530)
T ss_dssp ---------HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCH
T ss_pred ---------HHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCH
Confidence 1122233333222211111 122233333322 368888899999999986432 2112222 2355
Q ss_pred HHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH---HhHHHHH--HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 526 RDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR---AHWKFLK--TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 526 ~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~---~~~~~L~--~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
+.|+.+.... + ..++...++.+++.+.... .+-.++- .++..|+..+...++.|+..|+.++..++..+.
T Consensus 386 ~~L~~lL~~~----~-~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 386 PPLVKLLEVA----E-YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHS----C-HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----C-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 5666655431 2 2334446677777655422 1222222 367778887777789999999999999998876
Q ss_pred h
Q 036770 601 R 601 (1061)
Q Consensus 601 ~ 601 (1061)
.
T Consensus 461 ~ 461 (530)
T 1wa5_B 461 A 461 (530)
T ss_dssp H
T ss_pred h
Confidence 4
No 32
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.02 E-value=0.11 Score=62.15 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHH------------------H
Q 036770 463 ETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVM------------------V 524 (1061)
Q Consensus 463 ~~L~~l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~------------------v 524 (1061)
.++..+..+..+..+..+++.|...+.. .++.-...++++||.++..+.+.. ..++.. .
T Consensus 337 ~al~~L~~l~~~~nv~~iv~~L~~~l~~--~d~~~r~~~v~aI~~la~~~~~~~-~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 337 EKLDIMIRLASQANIAQVLAELKEYATE--VDVDFVRKAVRAIGRCAIKVEQSA-ERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp HHHHHHHHTCCSSTHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCChhhHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHhChhHH-HHHHHHHHHHHcccchHHHHHHHHH
Confidence 3444444443333344455555555432 366667778999999887764321 111111 1
Q ss_pred HHHHHH-hhhh----------hcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 036770 525 IRDLLN-LCEM----------TKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFL 593 (1061)
Q Consensus 525 i~~Ll~-l~~~----------~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~ 593 (1061)
+..++. .++. .......+.+...+.|++|+|+.++..-+ .++..++....+.++.||..++.++.
T Consensus 414 l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~----~~l~~l~~~~~~~~~~vr~~~l~a~~ 489 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNAD----ELLESFLEGFHDESTQVQLTLLTAIV 489 (591)
T ss_dssp HHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHH----HHHHHHSTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHH----HHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 122221 1110 00111222334558899999999986544 44445555333446889999999999
Q ss_pred HHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhh
Q 036770 594 KIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHM 644 (1061)
Q Consensus 594 ~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~l 644 (1061)
|+...+.. +..+.+..++.... ....+.+-|.+.++..+.+
T Consensus 490 Kl~~~~p~--------~~~~~i~~ll~~~~--~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 490 KLFLKKPS--------ETQELVQQVLSLAT--QDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHTTCCS--------TTHHHHHHHHHHHH--TTCCCHHHHHHHHHHHTTT
T ss_pred HHHhcCch--------HHHHHHHHHHHHhh--hcCCChHHHHHHHHHHHHH
Confidence 99865422 22234555554432 1223445566666666655
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0089 Score=62.94 Aligned_cols=196 Identities=11% Similarity=0.121 Sum_probs=118.9
Q ss_pred cccchhhHHHHHHHh-hh-CCCChhH-HhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHH-Hh-H-HHH
Q 036770 493 WTWNNLNTLCWAIGS-IS-GSMMEEQ-ENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLR-AH-W-KFL 566 (1061)
Q Consensus 493 ~~w~~le~~~~algs-is-~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~-~~-~-~~L 566 (1061)
.+|...-+++=+++. +. ++..-.. ..++ ..++..|...... +....++...+.++|+.++-+. .. . .|.
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~----D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQK----DANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHH----CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 589999888999988 76 4321110 1111 1233433333311 1223333445669999998886 33 3 688
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
..++..+++.+.+..+.|++.|..++..++..|...... ++++.++..+......=.+..+......++.++.
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-------~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-------GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-------CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-------CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 999999999888888999999999999999988552221 1355555555444333356778888999999988
Q ss_pred cCCCH-HHHHHHH-HHHhhchHHHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHhhhChh-hHHHHH
Q 036770 647 AESDV-QKREEYL-QRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVLNILQTNTSVASALGTF-FLSQIS 715 (1061)
Q Consensus 647 ~~~~~-~~~~~~l-~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~~il~~~~~i~~~~~~~-f~~~~~ 715 (1061)
..+.. ..-..++ ..++..+.. ++. + .++++.... ..|++.+++.+|.. +.|+++
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~----~l~----D----~~~~VR~aA---~~~l~~i~~~vG~~~~~p~l~ 232 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQ----IVN----D----TQPAIRTIG---FESFAILIKIFGMNTFVKTLE 232 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHH----HHT----C----SSHHHHHHH---HHHHHHHHHHHCSGGGHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHH----Hhc----C----CCHHHHHHH---HHHHHHHHHHhCHHHHHHHHH
Confidence 77642 2222355 555544333 221 1 244443333 34666777777763 666554
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.83 E-value=0.26 Score=57.95 Aligned_cols=356 Identities=12% Similarity=0.108 Sum_probs=179.2
Q ss_pred hHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHH
Q 036770 140 FIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLS 218 (1061)
Q Consensus 140 ~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~ 218 (1061)
-++.++..+.++ +......+..|+.+... ..... ...+ . -..++..+...|....++.+...++.
T Consensus 75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~----~~~~~----~~~~----~--~~g~v~~Lv~lL~~~~~~~v~~~A~~ 140 (528)
T 4b8j_A 75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSI----ERSPP----IEEV----I--QSGVVPRFVQFLTREDFPQLQFEAAW 140 (528)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC----SSSCC----HHHH----H--HTTCHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----CCCch----HHHH----H--HCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 366777766654 34455556666555321 11010 0111 1 12345556666665445788889999
Q ss_pred HHHhcccccC--cchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCC
Q 036770 219 TLHAFLSWIP--LGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTN 294 (1061)
Q Consensus 219 ~l~~~l~wi~--~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~ 294 (1061)
+|......-+ ...+.+...++.++.+|. ++.++..|+.+|..+..... .....+.. .+.+..+..++.
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~--~~~~~i~~--~g~l~~Ll~lL~---- 212 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP--KCRDLVLA--NGALLPLLAQLN---- 212 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH--HHHHHHHH--TTCHHHHHHTCC----
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh--hhHHHHHH--CCcHHHHHHHHh----
Confidence 9988776422 123445578888888886 45789999999999986321 11111111 012222323221
Q ss_pred hhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHHHH
Q 036770 295 IPEAYAHGNSEEQAFIQNLALFFTSFFKFHIRVLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELFDA 374 (1061)
Q Consensus 295 l~~~~~~~~~~d~~~~~~l~~l~~~~~~~~~~ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~~~ 374 (1061)
...+.......+..+..++... +.........++..|+.+...++.++...++.....+...-
T Consensus 213 --------~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--- 275 (528)
T 4b8j_A 213 --------EHTKLSMLRNATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--- 275 (528)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC---
T ss_pred --------cCCCHHHHHHHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC---
Confidence 1234456666666666554432 11111222344566777766777777666655444443110
Q ss_pred hccCCCcccccccCCCCCCCCchhhhhhhhhhhhhhhhhHHhhHHHHHHHHHhhCCCccccccccCCchhHHhhhcchhh
Q 036770 375 HNNLENPAVTANMMGLPMPLLPSVVDGIGAQLLQRRQLYAVPLSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDV 454 (1061)
Q Consensus 375 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~~li~km~~p~e~~~~~~d~~e~~~e~~~d~~~ 454 (1061)
+ .....+.. ..+++.++.-+..++ ..++.
T Consensus 276 ---------------------~----------~~~~~~~~---~g~v~~Lv~lL~~~~----------~~v~~------- 304 (528)
T 4b8j_A 276 ---------------------N----------DKIQAVIE---AGVCPRLVELLLHPS----------PSVLI------- 304 (528)
T ss_dssp ---------------------H----------HHHHHHHH---TTCHHHHHHHTTCSC----------HHHHH-------
T ss_pred ---------------------H----------HHHHHHHH---cCHHHHHHHHHcCCC----------hhHHH-------
Confidence 0 00000111 012333444443222 11110
Q ss_pred HHHHHHHHHHHHHHhcCCHH--------hHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHH-HHHH
Q 036770 455 LVQYKIMRETLIYLSHLDHE--------DTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVI 525 (1061)
Q Consensus 455 ~~ly~~~~~~L~~l~~l~~~--------~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi 525 (1061)
..-.+|..++.-... +.+..+.+.|. .. .++.....++|++|.++..- ++....++ ..++
T Consensus 305 -----~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~----~~-~~~~v~~~A~~~L~nl~~~~-~~~~~~~~~~~~i 373 (528)
T 4b8j_A 305 -----PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT----QN-LKKSIKKEACWTISNITAGN-KDQIQAVINAGII 373 (528)
T ss_dssp -----HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH----SC-CCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTCH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc----CC-CcHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCH
Confidence 112223333322221 22333333333 11 15666778899999998742 22111111 2455
Q ss_pred HHHHHhhhhhcCCcchHHHHHhHHHHhccchHHH-HHhHHHH--HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh
Q 036770 526 RDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFL-RAHWKFL--KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601 (1061)
Q Consensus 526 ~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l-~~~~~~L--~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~ 601 (1061)
+.|+.+.... + ..++...+++++..+..- ..+-.++ ..++..|+..+...++.++..|+.++..+++....
T Consensus 374 ~~L~~lL~~~----~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 374 GPLVNLLQTA----E-FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHHHHHS----C-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC----C-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666665542 2 223333566777665431 1122223 24677888888878899999999999999986643
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.67 E-value=1.8 Score=51.86 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=102.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhc-CcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Q 036770 20 ATVAAFYGTGSKEERTAADQILRDLQN-NPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN 95 (1061)
Q Consensus 20 ~av~~ly~~~~~~~r~~A~~~L~~fq~-s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~ 95 (1061)
.++..+.+ ++-+.|+-+.-++..+-+ .++.-..+..-|. .++|+.+|-.|+.+|-+... ++-- .
T Consensus 74 ~vik~~~s-~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~----~ 141 (618)
T 1w63_A 74 ECLKLIAS-QKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMC----R 141 (618)
T ss_dssp HHHHHHHS-SSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHH----H
T ss_pred HHHHHHcC-CchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHH----H
Confidence 33443333 366677777777777665 4553333333332 46788999999999977542 2222 2
Q ss_pred HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCc
Q 036770 96 YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSR 174 (1061)
Q Consensus 96 ~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~ 174 (1061)
.++..+.+...++ +.+||++.+.++..++... |+.-+.+++.+...+... +.....++..|..+.+.
T Consensus 142 ~l~~~l~~~L~~~-----~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~------ 209 (618)
T 1w63_A 142 DLAGEVEKLLKTS-----NSYLRKKAALCAVHVIRKV-PELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER------ 209 (618)
T ss_dssp HHHHHHHHHHHSC-----CHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS------
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh------
Confidence 3444444433332 3689999999999999864 765556666666665543 45555566666654321
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------cCcHHHHHHHHHHHHhccc
Q 036770 175 GEMTQQKIKELKQSLNSEFQLIHELCLYVLSA----------SQRTDLIRATLSTLHAFLS 225 (1061)
Q Consensus 175 ~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~----------~~~~~l~~~~L~~l~~~l~ 225 (1061)
. . +....+....+.++..+.+++.. ..++-+...++++++.+..
T Consensus 210 -~--~----~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 210 -S--P----DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp -H--H----HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred -C--h----HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 0 0 11223334566666666665542 1255666778888887764
No 36
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.66 E-value=0.2 Score=63.61 Aligned_cols=155 Identities=12% Similarity=0.131 Sum_probs=80.8
Q ss_pred hHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHh----HHHHhccchHHHHH-----hHHHHHHH
Q 036770 499 NTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASN----IMYVVGQYPRFLRA-----HWKFLKTV 569 (1061)
Q Consensus 499 e~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~----i~~~ig~y~~~l~~-----~~~~L~~v 569 (1061)
.++||.+|+.++-+.. ..++++.++..|+.-... +...++.. ++.+.....+-+.. ...|++.+
T Consensus 518 ~t~~~~lGry~~wl~~--~~~~L~~vl~~L~~~l~~-----~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i 590 (1023)
T 4hat_C 518 SDIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1023)
T ss_dssp HHHHHHHHTCHHHHHH--CHHHHHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence 4688999999886532 356888999988774421 11222332 33333333333321 12377777
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHH----hHHHhhh----c---C-C---cchH
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLS----GLATTVA----D---L-E---PHQI 634 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~----~l~~~~~----~---l-~---~~~~ 634 (1061)
++.+......-.+.-...+..++..+++.....-.. ..+++.++. .++.+.. + + + .+..
T Consensus 591 l~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~------~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEERSVAER------NRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHH------HHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhH------HHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHH
Confidence 777777544334455567778888877754322111 113333322 2222221 1 1 1 1234
Q ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHhhchHHH
Q 036770 635 HTFYESVGHMIQAESDVQKREEYLQRLMLLPNQK 668 (1061)
Q Consensus 635 ~~l~eaig~li~~~~~~~~~~~~l~~Ll~~~~~~ 668 (1061)
..++++.+.+.++++..- ..++..++..+.+-
T Consensus 665 ~~il~~~~~v~~~lg~~f--~~~~~~i~~~~l~~ 696 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGADF--YPQLGHIYYNMLQL 696 (1023)
T ss_dssp HHHHHHHHHHHHHHGGGG--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHH--HHHHHHHHHHHHHH
Confidence 567888888877776532 23455555444443
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.62 E-value=0.015 Score=60.81 Aligned_cols=155 Identities=9% Similarity=0.078 Sum_probs=97.0
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhh-hhcCCcchHHHHHhHHHHhccchHHHHHh-HHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCE-MTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFLKTVV 570 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~-~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L~~vl 570 (1061)
.+|.....++.+++.+.+....-.... +.++++.|..+.. . ....++...+.++|....-+... ..+.+.++
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd-----~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKD-----SNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 589999998999988765411100111 2345555554442 2 22233333556888777655432 35788899
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+.+++.+.++++.|++.|+.++..++..+. +..++..+.....+-++..+......++.++...+.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYASTS--------------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 999998888899999999999999987431 234444444333344567788999999998877643
Q ss_pred HHHHHHHHHHHhhchHH
Q 036770 651 VQKREEYLQRLMLLPNQ 667 (1061)
Q Consensus 651 ~~~~~~~l~~Ll~~~~~ 667 (1061)
...-..++..++..+..
T Consensus 167 ~~~~~~~l~~l~p~l~~ 183 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVK 183 (242)
T ss_dssp GGCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 21113466666665444
No 38
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.60 E-value=0.36 Score=62.16 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=60.0
Q ss_pred HHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH---------HHHHHHH
Q 036770 500 TLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW---------KFLKTVV 570 (1061)
Q Consensus 500 ~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~---------~~L~~vl 570 (1061)
++||++|+.+.-+.. ...+++.+++.++....+ ....+++..++.+.++++=.+.+- .|++.++
T Consensus 519 ~~~~~lgry~~~~~~--~~~~l~~vl~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKA--HWNFLRTVILKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHCHHHHHH--CHHHHHHHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 589999999865543 246889999988875432 224445556667766665433321 5688888
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC 599 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c 599 (1061)
+.+...+....+.-......++..++...
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 88887665433444456667777777544
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.60 E-value=0.84 Score=53.61 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=61.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KT 568 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~ 568 (1061)
.++.....++.++|.++..-... ...+ ..+++.|..+..+ ++..++...+|++++.+..-..+...+ ..
T Consensus 305 ~~~~v~~~a~~aL~nl~~~~~~~--~~~i~~~g~l~~L~~LL~~-----~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g 377 (529)
T 3tpo_A 305 TELPIVTPALRAIGNIVTGTDEQ--TQKVIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHG 377 (529)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTGGGGHHHHTTC-----SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHccchHH--HHHHhhcccHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence 35666778899999997643221 2211 2244556665543 233344446677776654322222222 23
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
++..|+..+.++++.++..|+.++..++..+.
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~ 409 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGT 409 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 56667776777788999999999999997653
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.42 E-value=1.4 Score=51.30 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=77.3
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
+......+++++|.++..-... ...+ ..+++.|..+..+ .+..++...+|++++.+..-..+...+ ..+
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~--~~~i~~~g~l~~L~~LL~~-----~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~ 359 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQ--TQKVIDAGALAVFPSLLTN-----PKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH--HHHHHHTTGGGGCC-CTTC-----SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred ChhhhhHHHHHHHHhhcCCHHH--HHHHhhccchHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCC
Confidence 5566778899999987543211 2221 1234444444433 233344446677776654322222222 235
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh----cccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCKR----KFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~----~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
+..|+..+...++.++..|+.++..++..+.. .++.. | .+..+++.+ ..-+.+-+....+++..++
T Consensus 360 i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~--g----~i~~L~~LL----~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 360 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC--G----IIEPLMNLL----SAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT--T----CHHHHHHGG----GCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC--C----CHHHHHHHh----cCCCHHHHHHHHHHHHHHH
Confidence 66777777777889999999999999976542 23221 1 233333333 2334555667778887777
Q ss_pred cc
Q 036770 646 QA 647 (1061)
Q Consensus 646 ~~ 647 (1061)
..
T Consensus 430 ~~ 431 (510)
T 3ul1_B 430 QA 431 (510)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.78 E-value=0.33 Score=61.45 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhcc------CCCChHHHHHHHHHHhHHhhhhcc--CCChHhHHHHHHHHHHHHhhchhHhhcCChHHH
Q 036770 789 VLSLFATIINKYKGA------MIDDVPRIFEAIFQCTLEMITKNF--EDYPEHRLKFFSLLRAIATHCFPALIRLSSQQL 860 (1061)
Q Consensus 789 ~L~l~~~li~~~~~~------~~~~l~~i~~~l~~~tl~~i~~~~--~~~Pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~ 860 (1061)
.|.+++.+-+..... ..+.++.++..+. .+++.+. ..+|-+|..++.++.+..+. +...++.+
T Consensus 463 aL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~----~ll~s~i~~~~hp~V~~~~~~~l~rys~~-----~~~~~~~l 533 (980)
T 3ibv_A 463 ALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILA----LVTTSQVCRHPHPLVQLLYMEILVRYASF-----FDYESAAI 533 (980)
T ss_dssp HHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHH----HHHHSSTTTCCCHHHHHHHHHHHHHTGGG-----GGTCCTTH
T ss_pred HHHHHHHHHhhccccccccCcccchhHHHHHHHH----HHHhCCCCCCCCHHHHHHHHHHHHHHHHH-----HhcCchhH
Confidence 567766665544331 2245666654433 3333222 46899999999999986553 22345688
Q ss_pred HHHHHHHHH--HhcCCChhHHHHHHHHHHHHHHhccc
Q 036770 861 KLVMDSIIW--AFRHTERNIAETGLNLLLEMLKNFQA 895 (1061)
Q Consensus 861 ~~~~~~i~~--~~~~~~~~i~~~~l~~l~~l~~~~~~ 895 (1061)
..+++.+.. |+.|++..+...|...+.++.+..+.
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 999999998 99999999999999999999988764
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.36 E-value=4.2 Score=47.54 Aligned_cols=69 Identities=6% Similarity=0.061 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCc--chhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 196 IHELCLYVLSASQRTDLIRATLSTLHAFLSWIPL--GYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 196 I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~--~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
++..+...|....++.+...+..||.....--+- ..+++...++.+..+|.+ +++++.|+.+|..|+..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 5556666776666788888888888877653221 235667788889888875 46889999999999863
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.26 E-value=0.055 Score=56.53 Aligned_cols=139 Identities=11% Similarity=0.162 Sum_probs=97.5
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKL 573 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L 573 (1061)
+.....+++-++|.++..+.+.. ..++..+++.++....+ .+..++......+.....-. .++.+++.+
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d-----~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l 138 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKE-----KKPNVVTALREAIDAIYAST-----SLEAQQESI 138 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence 45566788999999997765443 56888889988876653 33444443444443322211 145677778
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHHHhhhc-ccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCC
Q 036770 574 FEFMHETHPGVQDMACDTFLKIVQKCKRK-FVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESD 650 (1061)
Q Consensus 574 ~~~~~~~~~~v~~~A~~~f~~i~~~c~~~-l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~ 650 (1061)
+..+.+.++.++..++..+..+...+... +. .+++..++..+.....+-..+-|...++++|.+...+++
T Consensus 139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~-------~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 139 VESLSNKNPSVKSETALFIARALTRTQPTALN-------KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC-------HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc-------HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 88887788999999999999987665322 22 247888888887777666677788999999999988874
No 44
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.17 E-value=5.6 Score=46.21 Aligned_cols=121 Identities=11% Similarity=0.148 Sum_probs=68.8
Q ss_pred HHHHhhcCCccchhHHHHHHHccCCh-hHHHHHHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036770 127 QILKHEWPARWRSFIPDLVAAAKTSE-TICENCMAILK-LLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVL 204 (1061)
Q Consensus 127 ~i~~~~~p~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~-~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L 204 (1061)
.+....-..+|. ++++++.+.++. .....+..-++ .|+.| + ..+ . +.+.+ .-++..+...|
T Consensus 47 ~~~~~~~~~~~~--i~~~v~~l~s~d~~~q~~a~~~~rklls~e-----~-~pp---i----~~ii~--~G~ip~LV~lL 109 (510)
T 3ul1_B 47 DIGSNQGTVNWS--VEDIVKGINSNNLESQLQATQAARKLLSRE-----K-QPP---I----DNIIR--AGLIPKFVSFL 109 (510)
T ss_dssp ------CCSSCC--HHHHHHHHTSSCHHHHHHHHHHHHHHHTCS-----S-CCC---H----HHHHH--TTHHHHHHHHT
T ss_pred hhccccchhhhh--HHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-----C-Cch---H----HHHHH--CCCHHHHHHHH
Confidence 333333334564 899999888763 33222333333 34332 0 111 1 11111 12455566667
Q ss_pred hhcCcHHHHHHHHHHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 205 SASQRTDLIRATLSTLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 205 ~~~~~~~l~~~~L~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
....++.+...+..||....+--+ ...+++...++.+..+|.+ +++++.|+.+|..++..
T Consensus 110 ~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 110 GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp TCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 666677888888888877654222 1235566788889988875 47899999999999863
No 45
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.13 E-value=9 Score=47.13 Aligned_cols=219 Identities=13% Similarity=0.079 Sum_probs=122.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC----------cccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN----------PDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPV 87 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s----------~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~ 87 (1061)
+..++..+.+ .++..|..|-..|..+-.. +++......+|..+.++.+|..|+..|.+ +... .
T Consensus 152 ip~Lv~lL~~-~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~-----~ 224 (780)
T 2z6g_A 152 IPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-LSHH-----R 224 (780)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHTS-----H
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHH-HhCC-----c
Confidence 4444555544 4777899999998887763 35566666777666689999999999998 4322 2
Q ss_pred HHHHH-HHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHHHH
Q 036770 88 EQRDG-MKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENCMA 160 (1061)
Q Consensus 88 e~~~~-lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~L~ 160 (1061)
+.+.. .+...+..+......+. ..++...+.+|..|.... +... ...++.++..+..+ .......+.
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~-----~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~ 298 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPV-----DSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHH
Confidence 22332 23345555555543332 346677778888887653 2211 35677888888754 344455556
Q ss_pred HHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchhhHH
Q 036770 161 ILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESPLLE 239 (1061)
Q Consensus 161 iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~ll~ 239 (1061)
.|..++.. + . ..| .. +.. ...+..+..++...........+..++......-. ...+.+...++
T Consensus 299 aL~~La~~--~---~---e~~-~~----i~~--~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~ 363 (780)
T 2z6g_A 299 CLQILAYG--N---Q---ESK-LI----ILA--SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 363 (780)
T ss_dssp HHHHHHTT--C---H---HHH-HH----HHT--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHH
T ss_pred HHHHHhcC--C---h---HHH-HH----HHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHH
Confidence 66655421 0 0 011 11 111 12234445556554444444444444443332111 12344456677
Q ss_pred HHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 240 TLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 240 ~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
.+..++.+ +.++..|+.+|..+...
T Consensus 364 ~Ll~lL~~~~~~~~~~a~~~L~~L~~~ 390 (780)
T 2z6g_A 364 ALGLHLTDPSQRLVQNCLWTLRNLSDA 390 (780)
T ss_dssp HHGGGTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhcc
Confidence 77777764 34666777777777653
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.98 E-value=1.1 Score=46.12 Aligned_cols=221 Identities=15% Similarity=0.137 Sum_probs=140.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc----------cHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCC
Q 036770 17 LLDATVAAFYGTGSKEERTAADQILRDLQNNPD----------MWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALP 86 (1061)
Q Consensus 17 ~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~----------aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~ 86 (1061)
.+..++..+.++ +++.|..|-..|..+-.... +......+|. +.++.++..|+..|.+.... +
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~-----~ 75 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASG-----P 75 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTS-----C
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcC-----C
Confidence 455666666555 57788888888888865442 4555556664 45789999999999987542 2
Q ss_pred HHHHHHH-HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHHH
Q 036770 87 VEQRDGM-KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENCM 159 (1061)
Q Consensus 87 ~e~~~~l-r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~L 159 (1061)
++.+..+ +...+..+.....++ ..-++...+.++..+.... |... ...++.++..+..+ +......+
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~ 149 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 149 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 4444433 334566666554433 2456777778888777432 1111 25678888888754 45667778
Q ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCc--chhcchhh
Q 036770 160 AILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPL--GYIFESPL 237 (1061)
Q Consensus 160 ~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~--~~i~~~~l 237 (1061)
..|..++.. . ..++..+.+ ..++..+...+. ..++.+...++.++......-+- ..+.+...
T Consensus 150 ~~L~~l~~~----~-----~~~~~~~~~------~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 213 (252)
T 4hxt_A 150 RALANIASG----P-----DEAIKAIVD------AGGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGG 213 (252)
T ss_dssp HHHHHHTTS----C-----HHHHHHHHH------TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTH
T ss_pred HHHHHHHcC----C-----HHHHHHHHH------CcCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 888777542 0 111222211 234555556665 45678999999999988763221 23445678
Q ss_pred HHHHHhhCC--CccchHHHHHHHHHHhcCcC
Q 036770 238 LETLLKFFP--MPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 238 l~~l~~~L~--~~~~~~~a~~cL~ei~~~~~ 266 (1061)
++.+..++. ++.++..|+.+|..+.....
T Consensus 214 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 214 VEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 888888776 45788999999999987543
No 47
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=94.90 E-value=9.7 Score=48.23 Aligned_cols=158 Identities=11% Similarity=0.088 Sum_probs=79.6
Q ss_pred hHHHHhccchHHHH--HhHHHHHHHHHHHHHhhhcC-----ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHH
Q 036770 547 NIMYVVGQYPRFLR--AHWKFLKTVVNKLFEFMHET-----HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELL 619 (1061)
Q Consensus 547 ~i~~~ig~y~~~l~--~~~~~L~~vl~~L~~~~~~~-----~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il 619 (1061)
+.+|.+|.-+.=+. ....+|+.+++.|+.....+ .+.++...|+++.+.++=.+.| ..|+..++
T Consensus 498 a~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h---------~~~L~~vl 568 (1073)
T 3gjx_A 498 TLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH---------WKFLKTVV 568 (1073)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC---------HHHHHHHH
T ss_pred HHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC---------HHHHHHHH
Confidence 36777776643322 23469999999999844222 2346666677777766544432 13777777
Q ss_pred HhHHHhhhcCCcchHHHHHHHHhhhhccCCCH------HHHHHHHHHHhhchHHHHHHHHHHHhccccccCCHHHHHHHH
Q 036770 620 SGLATTVADLEPHQIHTFYESVGHMIQAESDV------QKREEYLQRLMLLPNQKWSEIIAQARQSVDFLKDQDVIRTVL 693 (1061)
Q Consensus 620 ~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~------~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 693 (1061)
+.+-.....-.+.-+.....|+..+.+.-+.. .....+++.++..+.+ +... .+++ .+.
T Consensus 569 ~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~----~~~~--------l~~~---~~~ 633 (1073)
T 3gjx_A 569 NKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINT----IICD--------LQPQ---QVH 633 (1073)
T ss_dssp HHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHH----HHTT--------CCHH---HHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHH----HHHh--------cCHH---HHH
Confidence 76654433222222333334444443332210 0012355555554332 2111 1222 356
Q ss_pred HHHhHHHHHHhhhChhh--HHHHHHHHHHHHHHHHHH
Q 036770 694 NILQTNTSVASALGTFF--LSQISVIFLDMLNVYKMY 728 (1061)
Q Consensus 694 ~il~~~~~i~~~~~~~f--~~~~~~i~~~ll~~y~~~ 728 (1061)
.+.++.+.+..+.+..- ...++.+++...+.++..
T Consensus 634 ~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 634 TFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 66667777777776432 333455555555555443
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.81 E-value=0.26 Score=49.73 Aligned_cols=139 Identities=9% Similarity=0.084 Sum_probs=81.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
.++.....++|+++.++..-.+.. ..++ ..+++.|+++..+. + ..++...++++++.+..-..+...+ ...
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~g~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQI-QAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTTHHHHHHHHTTCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHcCCHHHHHHHHcCC----C-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 357777889999999985432221 1221 23566677666542 2 2333445667776553222222212 235
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHHHhh---hcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQKCK---RKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~---~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
++.|+..+.++++.++..|+.++..++.... ..+... ..+..++..+. .-+.+.+.....+++.+..
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~----~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLS----SPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHTT----CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc------CcHHHHHHHHc----CCCHHHHHHHHHHHHHHHc
Confidence 7778888888889999999999999995322 222221 13444444332 2245567777888888876
Q ss_pred c
Q 036770 647 A 647 (1061)
Q Consensus 647 ~ 647 (1061)
.
T Consensus 168 ~ 168 (210)
T 4db6_A 168 G 168 (210)
T ss_dssp S
T ss_pred C
Confidence 4
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.80 E-value=0.43 Score=48.05 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl 570 (1061)
++...+.++|++|.++..-.+. ...++ ...++.|+.+..+. ...++...++++++.+.--..+.+ .+ ..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (210)
T 4db6_A 67 NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (210)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCcHH-HHHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcH
Confidence 5677888999999998543221 11121 22566677666542 233344456677766532222111 11 2367
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..|+..+.++++.++..|+.++..+|..
T Consensus 141 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 141 PALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7778877777899999999999999954
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.80 E-value=0.81 Score=49.07 Aligned_cols=139 Identities=12% Similarity=0.132 Sum_probs=84.1
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhH-HHHH-HHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHW-KFLK-TVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~-~~L~-~vl 570 (1061)
+-...+.++|++|.+++.-. ...+.++ ...++.|+.+.... ++..++...+|.++..++-..... .+.. ..+
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~LL~~~----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi 169 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRLLDRD----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGF 169 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHHHHHC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCH
Confidence 44667789999999997632 2112222 13667777766531 223344557778876543222212 2222 356
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHH---hhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQK---CKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~---c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
..|...++++++.++..||.++..++.. .+..++.. ..+..++..+. .-+.+-+.....+++.++..
T Consensus 170 ~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~------g~i~~Lv~LL~----~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 170 SVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM------GMVQQLVALVR----TEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT------THHHHHHHHHT----SCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc------CCHHHHHHHHc----CCChhHHHHHHHHHHHHHhC
Confidence 6667777777899999999999999975 22333321 13444444332 23556688888999998876
No 51
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.27 E-value=12 Score=44.74 Aligned_cols=221 Identities=11% Similarity=0.041 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcc----------cHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCC
Q 036770 16 ALLDATVAAFYGTGSKEERTAADQILRDLQNNPD----------MWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNAL 85 (1061)
Q Consensus 16 ~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~----------aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l 85 (1061)
..+..++..+.++ ++..|..|-..|.++-.... ........|..+.++.++..|+.+|.+...
T Consensus 14 g~i~~Lv~lL~~~-~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~------ 86 (644)
T 2z6h_A 14 RAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH------ 86 (644)
T ss_dssp TTHHHHHHHHTCS-CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT------
T ss_pred chHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc------
Confidence 3455566655544 77889999999998876543 344445566655688999999999986433
Q ss_pred CHHHHHHHHH-HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCcc-----chhHHHHHHHccCC-hhHHHHH
Q 036770 86 PVEQRDGMKN-YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARW-----RSFIPDLVAAAKTS-ETICENC 158 (1061)
Q Consensus 86 ~~e~~~~lr~-~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~W-----p~~i~~l~~~~~~~-~~~~~~~ 158 (1061)
.++.+..+.+ ..+..+......+. ..++...+.+|..+.... +..- ...++.++..++.+ .......
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSS-----HHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 2334443332 34555555433322 346777888888888764 2211 45778888888764 3333444
Q ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchhh
Q 036770 159 MAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESPL 237 (1061)
Q Consensus 159 L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~l 237 (1061)
+.+|..|+.. + . .. +..+.+ ...+..+..++.......+...++.++......-. ...+.+...
T Consensus 161 ~~~L~~La~~--~---~---~~-~~~i~~------~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~ 225 (644)
T 2z6h_A 161 TDCLQILAYG--N---Q---ES-KLIILA------SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225 (644)
T ss_dssp HHHHHHHHTT--C---H---HH-HHHHHH------TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTH
T ss_pred HHHHHHHHhc--C---c---HH-HHHHHH------cCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCC
Confidence 5566666531 0 0 11 111111 12345556666665556666677777665443211 123455667
Q ss_pred HHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 238 LETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 238 l~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
++.+..++.+ +.++..++.+|..+...
T Consensus 226 l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 8888877764 46778888888887653
No 52
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.61 E-value=1.6 Score=44.90 Aligned_cols=138 Identities=13% Similarity=0.079 Sum_probs=79.9
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHH-HH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWK-FL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~-~L-~~vl 570 (1061)
+....+.++|+++.++..-.+. ...+. ...++.|+.+..+. + ..++...+++++..+..-..+.. .. ..++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 130 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEA-IKAIVDAGGVEVLVKLLTST----D-SEVQKEAARALANIASGPDEAIKAIVDAGGV 130 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHTTCS----S-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHcCC----C-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 4666788999999998753222 12222 23566666666531 2 23333355666665532121111 11 2467
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh---hhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC---KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c---~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
..|+..+.++++.++..|+.++..++... +..+... ..+..++..+ ..-++.-+.....+++.+...
T Consensus 131 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll----~~~~~~v~~~a~~~L~~l~~~ 200 (252)
T 4hxt_A 131 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------GGVEVLVKLL----TSTDSEVQKEAARALANIASG 200 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHHT----TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------cCHHHHHHHH----CCCCHHHHHHHHHHHHHHHcC
Confidence 78888888888999999999999998632 2223221 1333333333 233455577778888887753
No 53
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.32 E-value=0.65 Score=48.22 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=62.6
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTV 569 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~v 569 (1061)
.++...+.++|+++.++..-... ...++ ..+++.|+.+..+. + ..++...++++++.+..-..+...+ ..+
T Consensus 108 ~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 181 (252)
T 4db8_A 108 PNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGA 181 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhhcCCchH-HHHHHHCCCHHHHHHHHhCC----C-HHHHHHHHHHHHHHHcCChHHHHHHHHCCC
Confidence 35777889999999998764321 12222 23667777766542 2 2333335567776554322222222 346
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 570 VNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 570 l~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
+..|+..+.++++.++..|+.++..+|.
T Consensus 182 i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 182 LPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 7778887877789999999999999984
No 54
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=92.95 E-value=19 Score=42.80 Aligned_cols=173 Identities=11% Similarity=0.120 Sum_probs=102.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-cccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNN-PDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM 93 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s-~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l 93 (1061)
+-.++..+ ++++.+.|+-+.-++..+-+. ++--..+...+. .++|+.+|-.|+.+|-+... ++-
T Consensus 76 ~~~vvkl~-~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~---- 143 (621)
T 2vgl_A 76 HMEAVNLL-SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS-------REM---- 143 (621)
T ss_dssp HHHHHHGG-GCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHH----
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHH----
Confidence 33444433 344777888888888887664 554444444442 35788999999999987532 232
Q ss_pred HHHHHHHHHHhh--cCchhhhhhHHHHHHHHHHHHHHHHhhcCCccc--hhHHHHHHHccC-ChhHHHHHHHHHHHHHHH
Q 036770 94 KNYISEVIVQLS--SNEASFREERLYVNKLNIILVQILKHEWPARWR--SFIPDLVAAAKT-SETICENCMAILKLLSEE 168 (1061)
Q Consensus 94 r~~ll~~l~~~~--~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp--~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EE 168 (1061)
-+.++..+.+.. .+. ..+||+|.+.++..++.. .|+.-+ ++++.+...+.. ++....+++..|..++++
T Consensus 144 ~~~l~~~v~~~l~~~d~-----~~~VRK~A~~al~kl~~~-~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 144 AEAFAGEIPKILVAGDT-----MDSVKQSAALCLLRLYRT-SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHHTTHHHHHHHCSSS-----CHHHHHHHHHHHHHHHHH-CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHh-ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 234444444432 332 478999999999999985 476555 667777776654 344555566666655543
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------cHHHHHHHHHHHHhcc
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQ------------RTDLIRATLSTLHAFL 224 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~------------~~~l~~~~L~~l~~~l 224 (1061)
- . +.+...++.++..+..++.... ++=+....|+.+..|.
T Consensus 218 ~------------~----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 218 N------------P----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp C------------H----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred C------------h----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 0 0 0122345566666666654321 3445556666666554
No 55
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.73 E-value=1.6 Score=45.24 Aligned_cols=138 Identities=10% Similarity=0.120 Sum_probs=81.5
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHh-HHHH-HHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAH-WKFL-KTVV 570 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~-~~~L-~~vl 570 (1061)
+....+.++|+++.++..-.+. ...++ ...++.|+.+..+. + ..++...+++++..+..-... .... ..++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 140 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSP----N-EQILQEALWALSNIASGGNEQIQAVIDAGAL 140 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHGGGCS----C-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHH-HHHHHHcCCHHHHHHHHcCC----C-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCH
Confidence 3566778999999998753322 12222 22667777776541 2 233344556776654433222 1222 2367
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHHHh---hhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 571 NKLFEFMHETHPGVQDMACDTFLKIVQKC---KRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 571 ~~L~~~~~~~~~~v~~~A~~~f~~i~~~c---~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
+.|+..+.++++.++..|+.++..++... +..+... ..+..++..+. .-+..-+.....+++.+...
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLS----SPNEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------TCHHHHHHGGG----CSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------CCHHHHHHHHC----CCCHHHHHHHHHHHHHHhcC
Confidence 88888888888999999999999999632 2223221 13444444432 22455577777788887643
No 56
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=92.43 E-value=6 Score=38.18 Aligned_cols=121 Identities=14% Similarity=0.323 Sum_probs=79.5
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcC
Q 036770 501 LCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHET 580 (1061)
Q Consensus 501 ~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~ 580 (1061)
.-|++|.|+.+-+ ..++.++..++.+.+++. ...|. .+.++..-+| .+|+.|..+.+.+|+..+++.
T Consensus 127 ~~yaLeeIaranP-----~l~~~v~rdi~smltskd-~~Dkl-~aLnFi~alG------en~~~yv~PfLprL~aLL~D~ 193 (253)
T 2db0_A 127 VSYALEEIAKANP-----MLMASIVRDFMSMLSSKN-REDKL-TALNFIEAMG------ENSFKYVNPFLPRIINLLHDG 193 (253)
T ss_dssp HHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSS-HHHHH-HHHHHHHTCC------TTTHHHHGGGHHHHHGGGGCS
T ss_pred HHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCC-hHHHH-HHHHHHHHHh------ccCccccCcchHHHHHHHcCc
Confidence 5789999987632 356778888888776432 11222 2333333334 467888899999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhcc
Q 036770 581 HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQA 647 (1061)
Q Consensus 581 ~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~ 647 (1061)
++.|+..|..++.+++..-.+ +-+ -+...+.. ..+-+..-+..+-||+|.++-.
T Consensus 194 deiVRaSaVEtL~~lA~~npk-lRk--------ii~~kl~e----~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 194 DEIVRASAVEALVHLATLNDK-LRK--------VVIKRLEE----LNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp SHHHHHHHHHHHHHHHTSCHH-HHH--------HHHHHHHH----CCCSCHHHHHHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHHcCHH-HHH--------HHHHHHHH----hcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999974333 221 22222222 2233444577889999988654
No 57
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=91.95 E-value=14 Score=38.71 Aligned_cols=216 Identities=9% Similarity=0.051 Sum_probs=124.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Q 036770 18 LDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYI 97 (1061)
Q Consensus 18 l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~l 97 (1061)
++.++..+.++ ++..|..|-..|.++. .+++.......|. +.++.+|..|+..|...- . +++.... +
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~-~-----~~~~~~~----l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRG-GQDAVRLAIEFCS-DKNYIRRDIGAFILGQIK-I-----CKKCEDN----V 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHC-CHHHHHHHHHHHT-CSSHHHHHHHHHHHHHSC-C-----CTTTHHH----H
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccC-CchHHHHHHHHHc-CCCHHHHHHHHHHHHHhc-c-----ccccchH----H
Confidence 34455555444 7888999999999886 6778888888884 568899999999886531 1 1112222 3
Q ss_pred HHHHHH-hhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH-Hhc---
Q 036770 98 SEVIVQ-LSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE-VFD--- 171 (1061)
Q Consensus 98 l~~l~~-~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE-v~~--- 171 (1061)
+..+.+ ..+++ ...+|...+.+++.+.... |...+..++.++..++.. +.........|..+..+ ...
T Consensus 92 ~~~L~~~~~~d~-----~~~vr~~a~~aL~~l~~~~-~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~ 165 (280)
T 1oyz_A 92 FNILNNMALNDK-----SACVRATAIESTAQRCKKN-PIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI 165 (280)
T ss_dssp HHHHHHHHHHCS-----CHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH
T ss_pred HHHHHHHHhcCC-----CHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 333321 11222 2457777888888887554 333466777777777653 34444455555544331 000
Q ss_pred -cCcccchHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCC
Q 036770 172 -FSRGEMTQQKIKELKQSLNSE---FQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPM 247 (1061)
Q Consensus 172 -~~~~~l~~~r~~~l~~~l~~~---~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~ 247 (1061)
.-.+.-...|. ..-.++..- .+.++..+...+.. .++.+...+..+++..- ++..++.+...+.+
T Consensus 166 ~~l~d~~~~vr~-~a~~aL~~~~~~~~~~~~~L~~~l~d-~~~~vR~~A~~aL~~~~---------~~~~~~~L~~~l~d 234 (280)
T 1oyz_A 166 NLLKDPNGDVRN-WAAFAININKYDNSDIRDCFVEMLQD-KNEEVRIEAIIGLSYRK---------DKRVLSVLCDELKK 234 (280)
T ss_dssp HHHTCSSHHHHH-HHHHHHHHHTCCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTT---------CGGGHHHHHHHHTS
T ss_pred HHHcCCCHHHHH-HHHHHHHhhccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC---------CHhhHHHHHHHhcC
Confidence 00011111222 222222221 34455555555543 45677888888876643 34567777777788
Q ss_pred ccchHHHHHHHHHHhc
Q 036770 248 PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 248 ~~~~~~a~~cL~ei~~ 263 (1061)
+++|..|+.+|..+..
T Consensus 235 ~~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 235 NTVYDDIIEAAGELGD 250 (280)
T ss_dssp SSCCHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHhcCc
Confidence 8888888888877654
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=90.92 E-value=36 Score=41.68 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=70.8
Q ss_pred hhHHHHHHHccC-ChhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHH
Q 036770 139 SFIPDLVAAAKT-SETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATL 217 (1061)
Q Consensus 139 ~~i~~l~~~~~~-~~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L 217 (1061)
..++.++..+.. ++...+..+..|..|+.+-. .+. .+. ..+.++..+...|....++++...+.
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~---------~~~-~i~-----~~~~~i~~Lv~~L~~~~d~~vr~~Aa 214 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA---------SRH-AIM-----RSPQMVSAIVRTMQNTNDVETARCTS 214 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH---------HHH-HHT-----TCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh---------hHH-HHH-----hccChHHHHHHHHcCCCCHHHHHHHH
Confidence 345555555543 45667778888888765311 111 111 12356666777777666788888888
Q ss_pred HHHHhcccccC--cchhcchhhHHHHHhhCCC--ccchHHHHHHHHHHhcC
Q 036770 218 STLHAFLSWIP--LGYIFESPLLETLLKFFPM--PSYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 218 ~~l~~~l~wi~--~~~i~~~~ll~~l~~~L~~--~~~~~~a~~cL~ei~~~ 264 (1061)
.+|..... .+ ...+.+...++.++.+|.+ +.++..|+.+|..+...
T Consensus 215 ~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 215 GTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 88887332 11 1234456788889988874 56889999999999874
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.09 E-value=15 Score=36.00 Aligned_cols=187 Identities=12% Similarity=0.050 Sum_probs=114.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHH
Q 036770 10 SQPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQ 89 (1061)
Q Consensus 10 ~~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~ 89 (1061)
..+++......++..+.++ ++..|..|-..|.++.. +.+.......|. +.++.+|..|+..|...- +++.
T Consensus 8 ~~~~~~~~~~~~i~~L~~~-~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~-------~~~~ 77 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIG-------DERA 77 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC-------CGGG
T ss_pred ccccCCcchHHHHHHhcCC-CHHHHHHHHHHHHhcCC-hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhC-------CHHH
Confidence 3466788888999888766 78899999999998764 567777778884 568999999999987642 1122
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHH
Q 036770 90 RDGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEE 168 (1061)
Q Consensus 90 ~~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EE 168 (1061)
. ..|+..+ .++ ...+|...+.+++.+. -+..++.++..+... +.........|..+..
T Consensus 78 ~----~~L~~~l----~d~-----~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 78 V----EPLIKAL----KDE-----DGWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp H----HHHHHHT----TCS-----SHHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred H----HHHHHHH----cCC-----CHHHHHHHHHHHHHhC-------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence 2 2233322 222 2346666666666542 245667777766543 3445555555554421
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC--
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP-- 246 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~-- 246 (1061)
+..+..+...+. ..++.+...++.+++.+- .+..++.+..++.
T Consensus 137 -------------------------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~---------~~~~~~~L~~~l~d~ 181 (201)
T 3ltj_A 137 -------------------------ERAVEPLIKALK-DEDGWVRQSAADALGEIG---------GERVRAAMEKLAETG 181 (201)
T ss_dssp -------------------------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC---------SHHHHHHHHHHHHHC
T ss_pred -------------------------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC---------chhHHHHHHHHHhCC
Confidence 112222333343 346678888888887652 2345555555553
Q ss_pred CccchHHHHHHHHHHh
Q 036770 247 MPSYRNLTLQCLTEVG 262 (1061)
Q Consensus 247 ~~~~~~~a~~cL~ei~ 262 (1061)
++.+|..|.+.|..+-
T Consensus 182 ~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 182 TGFARKVAVNYLETHK 197 (201)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4567888888776653
No 60
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=88.51 E-value=40 Score=38.69 Aligned_cols=221 Identities=11% Similarity=0.050 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCc----------ccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCC
Q 036770 15 VALLDATVAAFYGTGSKEERTAADQILRDLQNNP----------DMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNA 84 (1061)
Q Consensus 15 i~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~----------~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~ 84 (1061)
...+..++..+.+ .++..|..|-..|..+-..+ ++......+|..+.++.++..|+..|.+.-.
T Consensus 16 ~~~i~~Lv~lL~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----- 89 (529)
T 1jdh_A 16 TRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----- 89 (529)
T ss_dssp -CHHHHHHHHHTC-SCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----
T ss_pred HhhHHHHHHHhCC-CCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----
Confidence 3346666665554 47888999999998876543 3455555667666688999999999998433
Q ss_pred CCHHHHHHHHH-HHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCc-----cchhHHHHHHHccCC-hhHHHH
Q 036770 85 LPVEQRDGMKN-YISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPAR-----WRSFIPDLVAAAKTS-ETICEN 157 (1061)
Q Consensus 85 l~~e~~~~lr~-~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~-----Wp~~i~~l~~~~~~~-~~~~~~ 157 (1061)
.++.+..+.+ ..+..+.+...++. .-++...+.++..+.... +.. =...++.++..++.+ ......
T Consensus 90 -~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 90 -HREGLLAIFKSGGIPALVKMLGSPV-----DSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred -CchhHHHHHHcCCHHHHHHHHcCCC-----HHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 2334443332 34555555433322 346666778888777653 121 145677788887754 333444
Q ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccC-cchhcchh
Q 036770 158 CMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIP-LGYIFESP 236 (1061)
Q Consensus 158 ~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~-~~~i~~~~ 236 (1061)
....|..++.. + . .-+. .+... ..+..+...+...........+..++......-. ...+.+..
T Consensus 163 ~~~~L~~la~~--~---~----~~~~----~i~~~--~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 227 (529)
T 1jdh_A 163 TTDCLQILAYG--N---Q----ESKL----IILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227 (529)
T ss_dssp HHHHHHHHHTT--C---H----HHHH----HHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT
T ss_pred HHHHHHHHHhC--C---H----HHHH----HHHHC--CCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 45556555421 0 0 1111 11111 2244445556655555566666666655443211 12244456
Q ss_pred hHHHHHhhCCC--ccchHHHHHHHHHHhc
Q 036770 237 LLETLLKFFPM--PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 237 ll~~l~~~L~~--~~~~~~a~~cL~ei~~ 263 (1061)
.++.+..++.+ +.++..++.+|..+..
T Consensus 228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~ 256 (529)
T 1jdh_A 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSD 256 (529)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHhc
Confidence 77777776654 3456667777766654
No 61
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=86.17 E-value=2.9 Score=44.67 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=59.4
Q ss_pred chhhHHHHHHHhhhCCCChhHHhHHH-HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHHH
Q 036770 496 NNLNTLCWAIGSISGSMMEEQENRFL-VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVNK 572 (1061)
Q Consensus 496 ~~le~~~~algsis~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~~ 572 (1061)
...+.++|+++.++....+. ...|. ...++.|..+..+. +. .++...+|+++..+.--...-..+ ..++..
T Consensus 140 ~v~~~A~~ALsnl~~~~~~~-~~~~~~~ggi~~L~~lL~~~---d~--~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 140 TVRVKALFAISCLVREQEAG-LLQFLRLDGFSVLMRAMQQQ---VQ--KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHHSS---CH--HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHH-HHHHHHCCCHHHHHHHHcCC---CH--HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 44677899999998765432 22333 23566666655431 22 233335566665443211111222 235667
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHHHhh
Q 036770 573 LFEFMHETHPGVQDMACDTFLKIVQKCK 600 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i~~~c~ 600 (1061)
|+..+..+++.|+..|+.++..|++.+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 7777777788999999999999997654
No 62
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=84.90 E-value=11 Score=40.12 Aligned_cols=124 Identities=13% Similarity=0.202 Sum_probs=73.2
Q ss_pred hhhHHHHH-hhCC-CccchH-HHHHHHHHHhcCcCCcchHHHHHHHHHHHHHHHHhhCCCCCChhhhhcCCCcchHHHHH
Q 036770 235 SPLLETLL-KFFP-MPSYRN-LTLQCLTEVGALNFGDFYNVQYVNMYNVFMVQLQTILPPTTNIPEAYAHGNSEEQAFIQ 311 (1061)
Q Consensus 235 ~~ll~~l~-~~L~-~~~~~~-~a~~cL~ei~~~~~~~~~~~~~~~~f~~~l~~l~~~l~~~~~l~~~~~~~~~~d~~~~~ 311 (1061)
+++++.++ .+-. .|+.|+ ..+.|+..++.+ .+....+.+..+|+.+.+-...++.. ++ ++-+|...
T Consensus 72 ppLl~~VL~DY~~~vp~aRepeVL~l~~tii~k-l~~~i~~~vp~Il~~VFe~TL~MI~~--df--------~eyPehR~ 140 (321)
T 1w9c_A 72 PPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNK-LGGHITAEIPQIFDAVFECTLNMINK--DF--------EEYPEHRT 140 (321)
T ss_dssp HHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHHHHHSS--TT--------TCSHHHHH
T ss_pred HHHHHHHHHHHHhCCcccccHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHhc--cc--------ccChHHHH
Confidence 45665544 5533 466663 477777777774 22222334455555555444444432 11 23467888
Q ss_pred HHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHHH
Q 036770 312 NLALFFTSFFKFHIR-VLESTQENISALLMGLEYLINISYVDETEVFKVCLDYWNSFVLELF 372 (1061)
Q Consensus 312 ~l~~l~~~~~~~~~~-ile~~~~~~~~~~~~l~~ll~~~~~~d~ei~~~~l~fW~~l~~~l~ 372 (1061)
++-+++-++...... ++.=+++....+ ++.++-..+|++++|++..++--..+.+.+.
T Consensus 141 ~Ff~LL~ai~~~cF~al~~lp~~~fklv---idsiiWa~kH~~r~V~e~gL~il~~ll~n~~ 199 (321)
T 1w9c_A 141 NFFLLLQAVNSHCFPAFLAIPPTQFKLV---LDSIIWAFKHTMRNVADTGLQILFTLLQNVA 199 (321)
T ss_dssp HHHHHHHHHHHHCTTHHHHSCHHHHHHH---HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHH---HHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence 888888888877433 344333222222 3555556789999999999988888777663
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.91 E-value=5.8 Score=39.18 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=12.0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHH
Q 036770 573 LFEFMHETHPGVQDMACDTFLKI 595 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i 595 (1061)
|...+.++++.|+..|+.++.++
T Consensus 143 L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 143 LIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHh
Confidence 33344444555555665555554
No 64
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=81.87 E-value=47 Score=33.60 Aligned_cols=213 Identities=12% Similarity=0.056 Sum_probs=126.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 11 QPMDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 11 ~~~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
.+.+++++..-+. ..++-+..+-.+.+++.......+| ...|+.++.=|+++|++.++. .|...+
T Consensus 5 ~ii~~~~lre~L~----------sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~----~~~~l~ 69 (265)
T 3b2a_A 5 NPISKTELRELVL----------SWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKR----ADSDLR 69 (265)
T ss_dssp CCCCHHHHHHHHH----------TTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHH----SCHHHH
T ss_pred ccccHHHHHHHHH----------HhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHh----cccccc
Confidence 4456666555553 2345555666777888888888888 557899999999999999985 555555
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcC--CccchhHHHHHHHccCCh-hHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWP--ARWRSFIPDLVAAAKTSE-TICENCMAILKLLSE 167 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p--~~Wp~~i~~l~~~~~~~~-~~~~~~L~iL~~l~E 167 (1061)
..+-+.+++-+........ .+ +.=|...++-.+....-+ +.+.-..+.+.+..+.+. ...+. .+|
T Consensus 70 ~~~~e~~Ld~iI~llk~~d----Ek-val~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~e-------aae 137 (265)
T 3b2a_A 70 MMVLERHLDVFINALSQEN----EK-VTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIE-------TID 137 (265)
T ss_dssp HHHHHHHHHHHHHTCCSTT----HH-HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHHhccc----hh-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHH-------HHH
Confidence 5555566666665432221 11 333445666666665522 233444455555555432 22222 233
Q ss_pred HHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC-
Q 036770 168 EVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP- 246 (1061)
Q Consensus 168 Ev~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~- 246 (1061)
.+...+.. ...+.|.+++...+ .+.+..+..++|..+...-+.-.-..+++ +++.-+-.+|+
T Consensus 138 ~Lgklkv~---------------~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~-~I~~eI~elL~~ 200 (265)
T 3b2a_A 138 VLSKLQPL---------------EDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLT-LILDEIPSLLQN 200 (265)
T ss_dssp HHHHCCBS---------------CCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGG-GTTTTHHHHHTC
T ss_pred HhCcCCcc---------------cchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHH-HHHHHHHHHHcC
Confidence 32222111 12456778888888 67788888888888887766433111222 11111222333
Q ss_pred -CccchHHHHHHHHHHhcCcCC
Q 036770 247 -MPSYRNLTLQCLTEVGALNFG 267 (1061)
Q Consensus 247 -~~~~~~~a~~cL~ei~~~~~~ 267 (1061)
||.+++.|++.+-++++....
T Consensus 201 eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 201 DNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHcCccc
Confidence 778999999999999997543
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=77.80 E-value=17 Score=43.27 Aligned_cols=143 Identities=12% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhh--hhhcCCcchHHHHHhHHHHhccch
Q 036770 479 QMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLC--EMTKGKDNKAVIASNIMYVVGQYP 556 (1061)
Q Consensus 479 ~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~--~~~~~~~~k~~v~s~i~~~ig~y~ 556 (1061)
.+.+.+.+-+.+ .+......++-++|.|.. + ++...+++.+..+. .+ ..+.|+......+.
T Consensus 111 L~iN~l~kDl~~--~n~~ir~lALr~L~~i~~---~----e~~~~l~~~v~~~l~~~d-----~~~~VRK~A~~al~--- 173 (621)
T 2vgl_A 111 LINNAIKNDLAS--RNPTFMGLALHCIANVGS---R----EMAEAFAGEIPKILVAGD-----TMDSVKQSAALCLL--- 173 (621)
T ss_dssp HHHHHHHHHHHS--CCHHHHHHHHHHHHHHCC---H----HHHHHHTTHHHHHHHCSS-----SCHHHHHHHHHHHH---
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHhhccCC---H----HHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHH---
Confidence 344455443322 233344566777877743 2 24455556555554 32 23333333333444
Q ss_pred HHHHHhHHHHH--HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhh--cC---
Q 036770 557 RFLRAHWKFLK--TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVA--DL--- 629 (1061)
Q Consensus 557 ~~l~~~~~~L~--~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~--~l--- 629 (1061)
++++.+|+.++ ..++.+.+.+.+++++|+..|+.++..+|..-+..+.. ++..+++.+..+.. ..
T Consensus 174 kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~--------~~~~~~~~L~~ll~~~~~~~~ 245 (621)
T 2vgl_A 174 RLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKT--------SVSLAVSRLSRIVTSASTDLQ 245 (621)
T ss_dssp HHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTT--------HHHHHHHHHHHHHHCCSSSCS
T ss_pred HHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHH--------HHHHHHHHHHHHHhCCCCCcc
Confidence 34445677766 67788888888889999999999999999876654433 45555555544432 12
Q ss_pred --------CcchHHHHHHHHhhhhc
Q 036770 630 --------EPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 630 --------~~~~~~~l~eaig~li~ 646 (1061)
++-.+..+.+.++.+..
T Consensus 246 ~~~~~~~~~~w~qi~il~ll~~~~~ 270 (621)
T 2vgl_A 246 DYTYYFVPAPWLSVKLLRLLQCYPP 270 (621)
T ss_dssp TTEETTEESHHHHHHHHHHGGGSSS
T ss_pred chhhcCCCCchHHHHHHHHHHHhCC
Confidence 24457788888887653
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.28 E-value=1.5e+02 Score=37.00 Aligned_cols=219 Identities=11% Similarity=0.103 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcC----cccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHH
Q 036770 15 VALLDATVAAFYGTGSKEERTAADQILRDLQNN----PDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQR 90 (1061)
Q Consensus 15 i~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s----~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~ 90 (1061)
+..++..+..+......+.+..|...-..++.. .-.|.....+.....+-..- -+|...-..|-.....=++-+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~a~~~~~~~~~~~~~~~~~e- 90 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA-ANAMQAVAHIANQSNLSPSVE- 90 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH-HHHHHHHHHHTCTTTCCTTTH-
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH-HHHHHHHHHHHHhcCCCCCcc-
Confidence 455666666665443232344555555555533 22477666666432322111 555555555554443222221
Q ss_pred HHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCCh--hHHHHHHHHHHHHHHH
Q 036770 91 DGMKNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTSE--TICENCMAILKLLSEE 168 (1061)
Q Consensus 91 ~~lr~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~~--~~~~~~L~iL~~l~EE 168 (1061)
..+- .++..+.....+. ...||+....++..|+...-|..-+..++.++..+.++. +.....|.++..|.+.
T Consensus 91 ~~~~-~~~~~~~~~~~dk-----~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 91 PYIV-QLVPAICTNAGNK-----DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHH-TTHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 1111 2344443332322 234667777788888888766666788899988886542 4466788888888774
Q ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCc
Q 036770 169 VFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMP 248 (1061)
Q Consensus 169 v~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~ 248 (1061)
. .+++...++.|+..+..++-. ..+++..++.+|+...+..++-..+ .++++.+.+.+.+|
T Consensus 165 ~----------------~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~n~d~--~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 165 A----------------KDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVDNKDI--ERFIPSLIQCIADP 225 (986)
T ss_dssp S----------------HHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCCCTTT--GGGHHHHHHHHHCT
T ss_pred h----------------HHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCCCcch--hhhHHHHHHHhcCh
Confidence 2 134556788999888887754 4578999999999999987776555 46899999998888
Q ss_pred cchHHHHHHHHHHhc
Q 036770 249 SYRNLTLQCLTEVGA 263 (1061)
Q Consensus 249 ~~~~~a~~cL~ei~~ 263 (1061)
+ ..-+|+..+.+
T Consensus 226 ~---~~~~~~~~l~~ 237 (986)
T 2iw3_A 226 T---EVPETVHLLGA 237 (986)
T ss_dssp T---HHHHHHHHHTT
T ss_pred h---hhHHHHHHhhc
Confidence 4 35666666555
No 67
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.69 E-value=6.5 Score=39.17 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=56.4
Q ss_pred HhcCCHHhHHHHHHHHHHhhccCCccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHh
Q 036770 468 LSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASN 547 (1061)
Q Consensus 468 l~~l~~~~~~~~i~~~L~~~~~~~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~ 547 (1061)
|+.+........+.+.+. ..+|.....+++++|.+... ..++.|..+..+ +...++..
T Consensus 105 L~~~~~~~~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d-----~~~~vr~~ 162 (211)
T 3ltm_A 105 LGQIGDERAVEPLIKALK------DEDWFVRIAAAFALGEIGDE-----------RAVEPLIKALKD-----EDGWVRQS 162 (211)
T ss_dssp HHHHCCGGGHHHHHHHTT------CSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTC-----SSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHh------CCCHHHHHHHHHHHHHcCCH-----------HHHHHHHHHHcC-----CCHHHHHH
Confidence 333333444445554442 34677788889999998531 123334444432 22334444
Q ss_pred HHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh
Q 036770 548 IMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601 (1061)
Q Consensus 548 i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~ 601 (1061)
....+|++.. + .++..|...+.++++.|+..|..++.++..++..
T Consensus 163 a~~aL~~~~~-----~----~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 163 AADALGEIGG-----E----RVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHCS-----H----HHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhCc-----h----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 5667776643 2 3444455555667889999999999998876543
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.00 E-value=65 Score=31.49 Aligned_cols=186 Identities=12% Similarity=0.035 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHH
Q 036770 15 VALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMK 94 (1061)
Q Consensus 15 i~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr 94 (1061)
-+.+..++..+.++ ++..|..|-..|.++.. +++.......|. +.++.+|..|+..|...-. ++..
T Consensus 18 ~~~~~~L~~~L~~~-~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~-------~~~~---- 83 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD-SYYVRRAAAYALGKIGD-ERAVEPLIKALK-DEDAWVRRAAADALGQIGD-------ERAV---- 83 (211)
T ss_dssp GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-------GGGH----
T ss_pred HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC-ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-------HHHH----
Confidence 34556666666554 78899999999998764 677888888885 4689999999999876421 1222
Q ss_pred HHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccC
Q 036770 95 NYISEVIVQLSSNEASFREERLYVNKLNIILVQILKHEWPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFS 173 (1061)
Q Consensus 95 ~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~ 173 (1061)
..|+..+ .++. ..+|...+.+++.+. -+..++.++..+... +.........|..+.++
T Consensus 84 ~~L~~~l----~~~~-----~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 142 (211)
T 3ltm_A 84 EPLIKAL----KDED-----GWVRQSAAVALGQIG-------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE----- 142 (211)
T ss_dssp HHHHHHT----TCSS-----HHHHHHHHHHHHHHC-------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred HHHHHHH----cCCC-----HHHHHHHHHHHHHhC-------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-----
Confidence 2233332 2222 346666666666542 245677777776543 34455555555544211
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCCCccchHH
Q 036770 174 RGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNL 253 (1061)
Q Consensus 174 ~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~~~~~~~~ 253 (1061)
..+..+...+. ..++.+...+..+++.+-. .... +.+...+-. .++.+|..
T Consensus 143 ---------------------~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~----~~~~-~~L~~~l~d--~~~~vr~~ 193 (211)
T 3ltm_A 143 ---------------------RAVEPLIKALK-DEDGWVRQSAADALGEIGG----ERVR-AAMEKLAET--GTGFARKV 193 (211)
T ss_dssp ---------------------GGHHHHHHHTT-CSSHHHHHHHHHHHHHHCS----HHHH-HHHHHHHHH--CCHHHHHH
T ss_pred ---------------------HHHHHHHHHHc-CCCHHHHHHHHHHHHHhCc----hhHH-HHHHHHHhC--CCHHHHHH
Confidence 12222333343 3556777788888776632 1111 234443322 57788999
Q ss_pred HHHHHHHHhcC
Q 036770 254 TLQCLTEVGAL 264 (1061)
Q Consensus 254 a~~cL~ei~~~ 264 (1061)
|.++|..+-..
T Consensus 194 A~~aL~~~~~~ 204 (211)
T 3ltm_A 194 AVNYLETHKSF 204 (211)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHhcCCC
Confidence 99999888764
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=74.30 E-value=4.5 Score=36.99 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNK 572 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~ 572 (1061)
.+|.....++|++|.+.. ...+ +.|..+..+ +...++....+.+|+.. .+ ..+..
T Consensus 54 ~~~~vR~~A~~aL~~~~~-------~~a~----~~L~~~L~d-----~~~~VR~~A~~aL~~~~-----~~----~a~~~ 108 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQD-------ERAV----EPLIKLLED-----DSGFVRSGAARSLEQIG-----GE----RVRAA 108 (131)
T ss_dssp SCHHHHHHHHHHHGGGCS-------HHHH----HHHHHHHHH-----CCTHHHHHHHHHHHHHC-----SH----HHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-------HHHH----HHHHHHHcC-----CCHHHHHHHHHHHHHhC-----cH----HHHHH
Confidence 467888889999998863 1223 333333332 12233344566777665 22 34555
Q ss_pred HHHhhhcCChhHHHHHHHHHHH
Q 036770 573 LFEFMHETHPGVQDMACDTFLK 594 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~ 594 (1061)
|...+.++++.|+..|+.++.+
T Consensus 109 L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 109 MEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHh
Confidence 6666667788999999988754
No 70
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=73.35 E-value=23 Score=36.80 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=67.9
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNK 572 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~ 572 (1061)
.++.....++|++|.+.+ +.+++.|..+..+ +...++....+.+|+... .+...+.++..
T Consensus 35 ~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d-----~~~~vR~~A~~aL~~l~~----~~~~~~~l~~~ 94 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSD-----KNYIRRDIGAFILGQIKI----CKKCEDNVFNI 94 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHSCC----CTTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcC-----CCHHHHHHHHHHHHHhcc----ccccchHHHHH
Confidence 356666778999998862 1234445554443 122333335567776542 12223445555
Q ss_pred HHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhh
Q 036770 573 LFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMI 645 (1061)
Q Consensus 573 L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li 645 (1061)
|.. .++++++.|+..|+.++.+++..... +...++..+.....+-++.-+.....++|.+.
T Consensus 95 L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 95 LNNMALNDKSACVRATAIESTAQRCKKNPI------------YSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCc------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 553 45677899999999999999864321 11223333333333334555777777777764
No 71
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=69.53 E-value=1.8e+02 Score=34.20 Aligned_cols=52 Identities=6% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhh
Q 036770 545 ASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKR 601 (1061)
Q Consensus 545 ~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~ 601 (1061)
+...+.++|... .++..+.++..+..++.+++|.|+..|+.++.++++.+..
T Consensus 124 r~lAL~~L~~i~-----~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 124 QGLALCTLGCMG-----SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 343555666654 3567777788888888888999999999999999997654
No 72
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=65.94 E-value=45 Score=36.35 Aligned_cols=107 Identities=10% Similarity=0.065 Sum_probs=60.8
Q ss_pred cchhhHHHHHHHhhhCCCChhHHhHHHHH--HHHHHHHhhhhh---cC---CcchHHHHHhHHHHhccchHHHHHhHHHH
Q 036770 495 WNNLNTLCWAIGSISGSMMEEQENRFLVM--VIRDLLNLCEMT---KG---KDNKAVIASNIMYVVGQYPRFLRAHWKFL 566 (1061)
Q Consensus 495 w~~le~~~~algsis~~~~~~~e~~~l~~--vi~~Ll~l~~~~---~~---~~~k~~v~s~i~~~ig~y~~~l~~~~~~L 566 (1061)
-..+..++|++|.+++. ++ -++.+.+ .++.|+.+.... .+ ......++....+++...+.--..+...+
T Consensus 46 ~~~~~~A~~aL~nls~d--~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD--EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGTHHHHHHHHHHHHTS--HH-HHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC--HH-HHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34556789999999986 22 2333322 344455444211 11 01122233334455554432212223322
Q ss_pred ---HHHHHHHHHhhhcCChhHHHHHHHHHHHHHH----Hhhhccc
Q 036770 567 ---KTVVNKLFEFMHETHPGVQDMACDTFLKIVQ----KCKRKFV 604 (1061)
Q Consensus 567 ---~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~----~c~~~l~ 604 (1061)
..+++.|+..+..+++.++..|+.++..++. .+|..+.
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~ 167 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 167 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 4568888888887789999999999999985 3455554
No 73
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=64.63 E-value=90 Score=38.84 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=98.4
Q ss_pred hHHHHHHHhhhCCCCh--hHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHh
Q 036770 499 NTLCWAIGSISGSMME--EQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEF 576 (1061)
Q Consensus 499 e~~~~algsis~~~~~--~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~ 576 (1061)
|++|-++++++..... .. ..|+..+++.++..+.++. ...+......+..+++.++ |.-++.++..|++.
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~-~~v~~aa~~~~~~~~~~~~------~~a~~~~~~~~~~~ 141 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKD-KEIQSVASETLISIVNAVN------PVAIKALLPHLTNA 141 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSC------GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHH
Confidence 9999999999965432 33 4666677787777665431 1111111111222344333 33456777777776
Q ss_pred hhcC-ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHH---
Q 036770 577 MHET-HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQ--- 652 (1061)
Q Consensus 577 ~~~~-~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~--- 652 (1061)
|..+ ....+..|..++.++++.++..+.. .+.+++..+....-+..++-...-++++..+.+.+.|.+
T Consensus 142 ~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~ 213 (986)
T 2iw3_A 142 IVETNKWQEKIAILAAFSAMVDAAKDQVAL--------RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER 213 (986)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHSHHHHHH--------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred hccccchHHHHHHHHHHHHHHHHhHHHHHH--------hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh
Confidence 6443 4667889999999999999877765 678888888776666666666666666666666665533
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 036770 653 KREEYLQRLMLLPNQKWSEIIAQ 675 (1061)
Q Consensus 653 ~~~~~l~~Ll~~~~~~~~~~~~~ 675 (1061)
.-..+++.+-.| +....++..
T Consensus 214 ~~~~~~~~~~~p--~~~~~~~~~ 234 (986)
T 2iw3_A 214 FIPSLIQCIADP--TEVPETVHL 234 (986)
T ss_dssp GHHHHHHHHHCT--THHHHHHHH
T ss_pred hHHHHHHHhcCh--hhhHHHHHH
Confidence 224555555555 234445544
No 74
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=63.74 E-value=27 Score=42.59 Aligned_cols=144 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHHHHHHhhh
Q 036770 501 LCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVNKLFEFMH 578 (1061)
Q Consensus 501 ~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~~L~~~~~ 578 (1061)
++|+++.++..-.+....-.-...++.|..+..+ ....++....+++++...-=.....+. ...+..|+..+.
T Consensus 601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-----~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~ 675 (810)
T 3now_A 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-----DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675 (810)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-----CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc
Q ss_pred cCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHH--HHHHhHHHhhhcCCcchHHHHHHHHhhhhccCCCHHHHHH
Q 036770 579 ETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVS--ELLSGLATTVADLEPHQIHTFYESVGHMIQAESDVQKREE 656 (1061)
Q Consensus 579 ~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~--~il~~l~~~~~~l~~~~~~~l~eaig~li~~~~~~~~~~~ 656 (1061)
.+...++..||.++..++......... .++ ..+..+-.+...-+.+.+.....+++.+.. .+++....
T Consensus 676 s~d~~vq~~Aa~ALanLt~~s~~~~~~--------ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~--~s~e~~~~ 745 (810)
T 3now_A 676 DEDEETATACAGALAIITSVSVKCCEK--------ILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN--AGEEIAKK 745 (810)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCHHHHHH--------HHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHHH--------HHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh--CCHHHHHH
Q ss_pred HHH
Q 036770 657 YLQ 659 (1061)
Q Consensus 657 ~l~ 659 (1061)
+.+
T Consensus 746 l~e 748 (810)
T 3now_A 746 LFE 748 (810)
T ss_dssp HHT
T ss_pred HHH
No 75
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.44 E-value=1.4e+02 Score=30.80 Aligned_cols=173 Identities=14% Similarity=0.166 Sum_probs=99.8
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHH-HhhcCchhhhhhHHHHHHHHHHHHHHH--
Q 036770 53 QVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNYISEVIV-QLSSNEASFREERLYVNKLNIILVQIL-- 129 (1061)
Q Consensus 53 ~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr~~ll~~l~-~~~~~~~~~~~~~~v~~kl~~~la~i~-- 129 (1061)
....++ +++..-+.-|+..|...+.. .++.....-+-++.|+. +..... .-+..|.-.++..++
T Consensus 51 ~~~~lf--s~d~k~~~~ale~L~~~l~~-----~~~~~~~~lDll~kw~~lr~~d~N------~~v~~~~L~~L~~l~~~ 117 (266)
T 2of3_A 51 LMSQLF--HKDFKQHLAALDSLVRLADT-----SPRSLLSNSDLLLKWCTLRFFETN------PAALIKVLELCKVIVEL 117 (266)
T ss_dssp HHHHHT--CSCHHHHHHHHHHHHHHHHH-----CHHHHHHTHHHHHHHHHHHTTSCC------HHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCHHHHHHHHHHHHHHhhh-----ChHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHH
Confidence 334444 34667777888888887663 23333333444677775 222221 223344445554443
Q ss_pred --HhhcCCc---cchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036770 130 --KHEWPAR---WRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYV 203 (1061)
Q Consensus 130 --~~~~p~~---Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~ 203 (1061)
.++|.-. =..+++.++..++.+ +...+..-.+++.+++ ++ ....++..+...
T Consensus 118 l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~-v~---------------------~~~~v~~~l~~g 175 (266)
T 2of3_A 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD-VV---------------------GPLKMTPMLLDA 175 (266)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH-HH---------------------CHHHHHHHHHHG
T ss_pred HHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH-HC---------------------CHHHHHHHHHHH
Confidence 3333321 235666666666543 3444444445544432 21 123466777776
Q ss_pred HhhcCcHHHHHHHHHHHHhcccccCcchhcchhhH---HHHHhhCCCc--cchHHHHHHHHHHhcC
Q 036770 204 LSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLL---ETLLKFFPMP--SYRNLTLQCLTEVGAL 264 (1061)
Q Consensus 204 L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll---~~l~~~L~~~--~~~~~a~~cL~ei~~~ 264 (1061)
+. +.+...+..+|.++.+.++-.... ....+ +.+.++++++ .+|++|+.|+.++...
T Consensus 176 ~k-sKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 176 LK-SKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp GG-CSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred Hc-cCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 64 456788888999998888743333 13345 7777888755 5999999999998764
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=62.86 E-value=1.2e+02 Score=30.64 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhh----cCCccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH
Q 036770 119 NKLNIILVQILKHE----WPARWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEF 193 (1061)
Q Consensus 119 ~kl~~~la~i~~~~----~p~~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~ 193 (1061)
-..-.++-.+.++. =+..-.+++++++..+.+. +.....++++|+.|-|.+ +++.. ++
T Consensus 51 ~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v------pL~~~-----------~y 113 (265)
T 3b2a_A 51 LRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV------PMGSK-----------TF 113 (265)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC------CBCHH-----------HH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC------CCCHH-----------HH
Confidence 33346777777773 1224678999999988765 456667899999997753 44443 56
Q ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHHHHhcccccCcchhcchhhHHHHHhhCC--CccchHHHHHHHHHHhcCcC
Q 036770 194 QLIHELCLYVLSASQRTDLIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFP--MPSYRNLTLQCLTEVGALNF 266 (1061)
Q Consensus 194 ~~I~~~~~~~L~~~~~~~l~~~~L~~l~~~l~wi~~~~i~~~~ll~~l~~~L~--~~~~~~~a~~cL~ei~~~~~ 266 (1061)
..+...+..++. ..++-+...+.+.++.. + +. ...+.+++.++.++. ++.+..+++..|+++.+...
T Consensus 114 ~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-k---v~-~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 114 LKAAKTLVSLLE-SPDDMMRIETIDVLSKL-Q---PL-EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-C---BS-CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhc-CCCchHHHHHHHHhCcC-C---cc-cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 677777777777 45666777777887776 2 11 122567777777766 45677889999999998654
No 77
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=55.74 E-value=46 Score=29.92 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=48.5
Q ss_pred cccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHHHHHHHH
Q 036770 493 WTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNK 572 (1061)
Q Consensus 493 ~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~ 572 (1061)
.+|.....++|++|.+... . ++.|+.+..+ +...++....+.+|+... + ..+..
T Consensus 24 ~~~~vR~~A~~~L~~~~~~------~------~~~L~~~L~d-----~~~~vR~~A~~aL~~~~~-----~----~a~~~ 77 (131)
T 1te4_A 24 ENKWVRRDVSTALSRMGDE------A------FEPLLESLSN-----EDWRIRGAAAWIIGNFQD-----E----RAVEP 77 (131)
T ss_dssp SCCCSSSSCCSSTTSCSST------T------HHHHHHGGGC-----SCHHHHHHHHHHHGGGCS-----H----HHHHH
T ss_pred CCHHHHHHHHHHHHHhCch------H------HHHHHHHHcC-----CCHHHHHHHHHHHHhcCC-----H----HHHHH
Confidence 3555666667888766432 1 1334444433 223444556778998763 2 33455
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHH
Q 036770 573 LFEFMHETHPGVQDMACDTFLKIV 596 (1061)
Q Consensus 573 L~~~~~~~~~~v~~~A~~~f~~i~ 596 (1061)
|...+.++++.|+..|+.++.++.
T Consensus 78 L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 78 LIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555556788999999999998875
No 78
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=52.22 E-value=59 Score=36.79 Aligned_cols=95 Identities=11% Similarity=0.048 Sum_probs=53.9
Q ss_pred HHHHHHHhhhCCCChhHHhHHHH--HHHHHHHHhhhhh---cC---CcchHHHHHhHHHHhccchHHHHHhHHHH---HH
Q 036770 500 TLCWAIGSISGSMMEEQENRFLV--MVIRDLLNLCEMT---KG---KDNKAVIASNIMYVVGQYPRFLRAHWKFL---KT 568 (1061)
Q Consensus 500 ~~~~algsis~~~~~~~e~~~l~--~vi~~Ll~l~~~~---~~---~~~k~~v~s~i~~~ig~y~~~l~~~~~~L---~~ 568 (1061)
.+.|+||.+++. ++ -++.+. ..++.|+.+.... .+ ......++.+..++++..+.-=..++..+ ..
T Consensus 167 qAv~aL~nls~~--~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 167 PAVCVLMKLSFD--EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp HHHHHHHHHTTS--HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHhcCC--HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 568888888765 33 233332 2455555554210 11 01122233334555555442212233333 45
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
+++.|+..+..+++.++..|+.++..++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~ 272 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSW 272 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 68888887877789999999999999985
No 79
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=51.87 E-value=30 Score=32.20 Aligned_cols=55 Identities=9% Similarity=0.135 Sum_probs=41.4
Q ss_pred chHHHHHhHHHHhccchHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhc
Q 036770 540 NKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRK 602 (1061)
Q Consensus 540 ~k~~v~s~i~~~ig~y~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~ 602 (1061)
.+..|.+ .+.|...|.++-+.+++.+-..++...|.-+-.+.|.+-+|++.|+..
T Consensus 23 Sk~~I~~--------LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~ 77 (144)
T 1sz9_A 23 SRPIITT--------LTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSP 77 (144)
T ss_dssp CHHHHHH--------HHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTT
T ss_pred cHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccch
Confidence 5566654 245556666677778887777777777888999999999999998753
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=50.77 E-value=1.3e+02 Score=32.56 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=55.0
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHH---H--
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKF---L-- 566 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~---L-- 566 (1061)
+....+.++.+++.++..-.+. ...+. ...++.|..+...........+. ...++++...+.++..+++. +
T Consensus 184 ~~~~~~~A~~aL~nLs~~~~~n-k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~-~~A~~aL~nLs~~~a~~~~~~~~i~~ 261 (354)
T 3nmw_A 184 KESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAII-ESGGGILRNVSSLIATNEDHRQILRE 261 (354)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHH-HHHHHHSTTHHHHHHHHTTCCCSSSCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHccChhh-hHHHHHhcCcHHHHHHHhccCCCcccHHHH-HHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 4556677788888887632221 12222 24567777766532111000121 11333444433332222221 1
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
...+..|+..+..+.+.++..|+.++..++.
T Consensus 262 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 262 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 1256777777777778899999999999983
No 81
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=49.74 E-value=4.2e+02 Score=32.08 Aligned_cols=293 Identities=13% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHhhC---------CCccccccccCCchhHHhhhcchhhHHHH-------HHHHHHHHHHhcCCH---H
Q 036770 414 AVPLSKLRMLMICRMA---------KPEEVLIVEDENGNIVRETMKDNDVLVQY-------KIMRETLIYLSHLDH---E 474 (1061)
Q Consensus 414 ~~~l~~L~~~li~km~---------~p~e~~~~~~d~~e~~~e~~~d~~~~~ly-------~~~~~~L~~l~~l~~---~ 474 (1061)
..++..|....++|.. .|++.- ..+++.+.|-+-+.......+| .....+|.+||.+.| +
T Consensus 297 ~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~~~-Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~ 375 (799)
T 1vsy_4 297 AKFVHAFIKSYHGRVKYEEDICARGVTNGIC-LTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAY 375 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTTCCCSSS-CCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCchhhc-CCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccc
Q ss_pred hHHHHHHHHHHhhccC--CccccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHH-hhhhhcCCcchHHHHHhHHHH
Q 036770 475 DTEKQMLKKLSKQLSG--EDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLN-LCEMTKGKDNKAVIASNIMYV 551 (1061)
Q Consensus 475 ~~~~~i~~~L~~~~~~--~~~~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~-l~~~~~~~~~k~~v~s~i~~~ 551 (1061)
-++..+++.+...+++ -. .-+.+.+++-++.+++..+... +.+-.-+++.|.. +|.-..+-..|...+-+++..
T Consensus 376 lVlP~vL~r~y~sLe~~~l~-e~Hrl~~aL~~l~~~~r~lv~~--~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~ 452 (799)
T 1vsy_4 376 LIYDKILIDLYDTLADQFIN-SRHRIISSLKQFTRVIRFIVMD--KLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVS 452 (799)
T ss_dssp HHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHTTHHHHTTS--TTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHhcccccc-chhHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q ss_pred h-------------------ccchHHHHHhH-------------------------------HHHHHHHHHHHH-hhhcC
Q 036770 552 V-------------------GQYPRFLRAHW-------------------------------KFLKTVVNKLFE-FMHET 580 (1061)
Q Consensus 552 i-------------------g~y~~~l~~~~-------------------------------~~L~~vl~~L~~-~~~~~ 580 (1061)
+ +.|..|+..|. +++...+.++|. .-+..
T Consensus 453 i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~ 532 (799)
T 1vsy_4 453 IAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDL 532 (799)
T ss_dssp HHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Q ss_pred ChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHH----HHHHhhhhccCCCHHHHHH
Q 036770 581 HPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTF----YESVGHMIQAESDVQKREE 656 (1061)
Q Consensus 581 ~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l----~eaig~li~~~~~~~~~~~ 656 (1061)
.+++...-..++..++.+|...+... .++.+.+...+....-..+....+ ..|++.. -| .
T Consensus 533 Ee~l~~~l~~~~~~l~~~lS~~if~~-------~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~---~P-----~- 596 (799)
T 1vsy_4 533 EDSLVTKINQTTMILQESMDDKIFNY-------FASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRR---NN-----G- 596 (799)
T ss_dssp CTHHHHHHHHHHHHHHHTBCHHHHHH-------HHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHH---CG-----G-
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHH-------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh---CH-----H-
Q ss_pred HHHHHhhchHHHHHHHHHHHhccccccCC-HHHHHHHHHHHhHHHHHHhhhChhhHHHHHHHHHHHHHHHH
Q 036770 657 YLQRLMLLPNQKWSEIIAQARQSVDFLKD-QDVIRTVLNILQTNTSVASALGTFFLSQISVIFLDMLNVYK 726 (1061)
Q Consensus 657 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~i~~il~~~~~i~~~~~~~f~~~~~~i~~~ll~~y~ 726 (1061)
.+..++..+.......+.+.......-.+ +..-..+..-+.+++.+...-|....++...++.-+-..+.
T Consensus 597 ~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 597 LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHH
No 82
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=45.39 E-value=70 Score=29.02 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=35.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccc
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFV 604 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~ 604 (1061)
+.|.-.|.++-+.++..+.+.+....+.-+-...|++-.|++.|+..-.
T Consensus 28 s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~ 76 (132)
T 4flb_A 28 SSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNA 76 (132)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccCh
Confidence 3555556566667777777766666677788999999999999987543
No 83
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=45.24 E-value=36 Score=39.04 Aligned_cols=120 Identities=10% Similarity=0.181 Sum_probs=71.2
Q ss_pred chhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccch-HHHHHhHHHHHHHHHHHH
Q 036770 496 NNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYP-RFLRAHWKFLKTVVNKLF 574 (1061)
Q Consensus 496 ~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~-~~l~~~~~~L~~vl~~L~ 574 (1061)
...|+++.++|++ ..++++ . +++..++.... ...-.+.+++++ -+ +|- +++. + |+.+++.++
T Consensus 243 PVRETaAQtLGaL-~hLp~e--~----~IL~qLV~~l~----~~~WEVRHGGLL-GL-KYL~DLL~---~-Ld~Vv~aVL 305 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP--N----DIIEQLVGFLD----SGDWQVQFSGLI-AL-GYLKEFVE---D-KDGLCRKLV 305 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS--C----CHHHHHTTGGG----CSCHHHHHHHHH-HH-HHTGGGCC---C-HHHHHHHHH
T ss_pred ehHHHHHHHHHHH-HhCChh--H----HHHHHHHhhcC----CCCeeehhhhHH-HH-HHHHHHHH---H-HHHHHHHHH
Confidence 4569999999999 877655 2 23333332222 124455555443 11 232 2222 1 788999999
Q ss_pred HhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCc--chHHHHHHHHhhhhc
Q 036770 575 EFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEP--HQIHTFYESVGHMIQ 646 (1061)
Q Consensus 575 ~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~--~~~~~l~eaig~li~ 646 (1061)
.++.+.++.|+..|+.++.-++ .+ ..+..+++.+.+...+++. .+...++.-++.+.+
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA-------~p-------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP-------IT-------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC-------CS-------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHH
T ss_pred hhcCCcccHHHHHHHHHhhhhc-------ch-------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHc
Confidence 9999888999999999988877 11 1456666666655443321 123445555555443
No 84
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=39.59 E-value=4.5e+02 Score=29.46 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=99.5
Q ss_pred HHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHH-HHHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHh
Q 036770 53 QVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGM-KNYISEVIVQLSSNEASFREERLYVNKLNIILVQILKH 131 (1061)
Q Consensus 53 ~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~l-r~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~ 131 (1061)
....+|..+.+...+.-++.+|.+.-. .++.+..+ +...+..+.....++ ...++...+.++..+...
T Consensus 189 ~L~~ll~~~~~~~~~~~a~~~L~~l~~------~~~~~~~~~~~g~~~~L~~ll~~~-----~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 189 ALVNIMRTYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGGMQALGLHLTDP-----SQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTT------STTHHHHHHHTTHHHHHHTTTTSS-----CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHhc------CcccHHHHHHCCCHHHHHHHHhCC-----ChHHHHHHHHHHHHHhcC
Confidence 333444443334444445555554432 22233333 334555555544332 234566677777777654
Q ss_pred hcCC-ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 036770 132 EWPA-RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS-Q 208 (1061)
Q Consensus 132 ~~p~-~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~-~ 208 (1061)
.-+. .-...++.++..+..+ +........+|..|+.. + ...+..+.+ ...+..+...|... .
T Consensus 258 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~----~-----~~~~~~~~~------~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----N-----YKNKMMVCQ------VGGIEALVRTVLRAGD 322 (529)
T ss_dssp CTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT----C-----HHHHHHHHH------TTHHHHHHHHHHHHTT
T ss_pred ChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC----C-----HHHHHHHHH------cCChHHHHHHHHccCC
Confidence 3111 2245788888887654 45667777888777431 0 111222221 12344445555543 3
Q ss_pred cHHHHHHHHHHHHhcccccCcc-----hhcchhhHHHHHhhCCCc---cchHHHHHHHHHHhc
Q 036770 209 RTDLIRATLSTLHAFLSWIPLG-----YIFESPLLETLLKFFPMP---SYRNLTLQCLTEVGA 263 (1061)
Q Consensus 209 ~~~l~~~~L~~l~~~l~wi~~~-----~i~~~~ll~~l~~~L~~~---~~~~~a~~cL~ei~~ 263 (1061)
++.+...++.+++....--+-+ .+.+...++.+..+|.++ .++..|+.+|..+..
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence 4688889999998876432221 344456677777777643 567777777777765
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=39.51 E-value=2.3e+02 Score=31.80 Aligned_cols=102 Identities=10% Similarity=0.113 Sum_probs=54.0
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHH--HHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH-----
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFL--VMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL----- 566 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L----- 566 (1061)
+....+.++.+++.++..-.+. ...+. ...++.|..+.........-.+ ....++++...+.++..+++.-
T Consensus 300 ~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~~Lv~LL~~~~~~~~~~v-~~~A~~aL~nLs~~~a~~~~~~~~i~~ 377 (458)
T 3nmz_A 300 KESTLKSVLSALWNLSAHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAI-IESGGGILRNVSSLIATNEDHRQILRE 377 (458)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHHHHHHHTTCCCSSSTTHH-HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHHHHHHHhcCCCCcchHHH-HHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 4556676677777777522111 12222 2356667766653211100011 1223344444443322222221
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHH
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQ 597 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~ 597 (1061)
...+..|+..+......++..|+.++..++.
T Consensus 378 ~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 378 NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 1346677777777778899999999999983
No 86
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=38.42 E-value=5.4e+02 Score=30.03 Aligned_cols=187 Identities=11% Similarity=0.010 Sum_probs=103.6
Q ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHH
Q 036770 51 WLQVVHILQNSKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMK-NYISEVIVQLSSNEASFREERLYVNKLNIILVQIL 129 (1061)
Q Consensus 51 w~~~~~iL~~s~~~~~rffaa~~L~~~I~~~w~~l~~e~~~~lr-~~ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~ 129 (1061)
......+|.......++.-++.+|.+.-. .++.+..+. ...+..+......+ ..-++...+.++..+.
T Consensus 184 v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~------~~~~~~~l~~~g~l~~L~~ll~~~-----~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGGMQALGLHLTDP-----SQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTT------CTTHHHHHHHTTHHHHHHTTTTCS-----CHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHhc------CcccHHHHHHCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHh
Confidence 34444555544445566666666666532 223343333 23555555544332 1345666777787776
Q ss_pred HhhcCC-ccchhHHHHHHHccCC-hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036770 130 KHEWPA-RWRSFIPDLVAAAKTS-ETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSAS 207 (1061)
Q Consensus 130 ~~~~p~-~Wp~~i~~l~~~~~~~-~~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~ 207 (1061)
...-+. .-...++.++..+..+ .........+|..|+.. . ...+..+.+ ..++..+...+...
T Consensus 253 ~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~----~-----~~~~~~v~~------~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN----N-----YKNKMMVCQ------VGGIEALVRTVLRA 317 (644)
T ss_dssp GGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----C-----HHHHHHHHH------TTHHHHHHHHHHHH
T ss_pred hcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC----C-----HHHHHHHHH------cCCHHHHHHHHHcc
Confidence 543111 2235788888888754 45667777888777541 0 111222211 12444555555553
Q ss_pred C-cHHHHHHHHHHHHhcccccCcc-----hhcchhhHHHHHhhCCC---ccchHHHHHHHHHHhc
Q 036770 208 Q-RTDLIRATLSTLHAFLSWIPLG-----YIFESPLLETLLKFFPM---PSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 208 ~-~~~l~~~~L~~l~~~l~wi~~~-----~i~~~~ll~~l~~~L~~---~~~~~~a~~cL~ei~~ 263 (1061)
. .+.+...++.+++....--+-+ .+.+...++.+.++|.+ +.++..|+.+|..+..
T Consensus 318 ~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 3 3688899999998886432211 13345667777777764 3567777777777664
No 87
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=35.65 E-value=1.4e+02 Score=30.89 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH-hhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHh
Q 036770 564 KFLKTVVNKLFE-FMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVG 642 (1061)
Q Consensus 564 ~~L~~vl~~L~~-~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig 642 (1061)
.+...++..|++ ++.++.+.++..|..++..++..|.... ..++.++. ....-.+..+......++
T Consensus 98 ~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---------~~~e~l~~----~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---------QSVELVIP----FFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---------HHHHHHGG----GGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---------HHHHHHHH----HHhccCHHHHHHHHHHHH
Confidence 355667777777 5677788899999999999987553211 12233322 233445666666666666
Q ss_pred hhhccC
Q 036770 643 HMIQAE 648 (1061)
Q Consensus 643 ~li~~~ 648 (1061)
.++...
T Consensus 165 ~~l~~f 170 (278)
T 4ffb_C 165 ELMAAF 170 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666553
No 88
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=33.94 E-value=4.9e+02 Score=30.16 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHH
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~ 598 (1061)
..++.|...++.+++.|+..||.++..++..
T Consensus 355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 355 KALSAIADLLTNEHERVVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 5577777777777889999999999999874
No 89
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=30.17 E-value=1e+02 Score=34.65 Aligned_cols=100 Identities=6% Similarity=-0.018 Sum_probs=55.1
Q ss_pred ccchhhHHHHHHHhhhCCCChhHHhHHHHHHHHHHHHhhhhhcCCcchHHHHHhHHHHhccchHHHHHhHHHH--HHHHH
Q 036770 494 TWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEMTKGKDNKAVIASNIMYVVGQYPRFLRAHWKFL--KTVVN 571 (1061)
Q Consensus 494 ~w~~le~~~~algsis~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~~~k~~v~s~i~~~ig~y~~~l~~~~~~L--~~vl~ 571 (1061)
++...+.++|+++.++..-.+....-.-...++.|+.+..+. +.. ++....+.+...+..-..+...+ ...++
T Consensus 15 ~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~-~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~ 89 (457)
T 1xm9_A 15 DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP----NQN-VQQAAAGALRNLVFRSTTNKLETRRQNGIR 89 (457)
T ss_dssp CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS----CHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC----CHH-HHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 456677889999998854322111111123466666666531 221 22223334443332101111222 23467
Q ss_pred HHHHhhh-cCChhHHHHHHHHHHHHHHH
Q 036770 572 KLFEFMH-ETHPGVQDMACDTFLKIVQK 598 (1061)
Q Consensus 572 ~L~~~~~-~~~~~v~~~A~~~f~~i~~~ 598 (1061)
.|+..+. .+++.++..|+.++..++..
T Consensus 90 ~Lv~lL~~~~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 90 EAVSLLRRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHhcC
Confidence 7777776 66789999999999999953
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=29.06 E-value=3.7e+02 Score=27.41 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHhHHHhhhcCCcchHHHHHHHHhhhhc
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSGLATTVADLEPHQIHTFYESVGHMIQ 646 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~l~~~~~~l~~~~~~~l~eaig~li~ 646 (1061)
..++..+..++.+.+|.++..++..+.++.........+ ..+.+..++..+....++-+..-|....+.++.+-.
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~-----~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVN-----VQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCC-----HHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCC-----chhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 345677777888889999999999999988876543332 124566666666666666666667777777777665
Q ss_pred cCC
Q 036770 647 AES 649 (1061)
Q Consensus 647 ~~~ 649 (1061)
.++
T Consensus 213 ~~G 215 (278)
T 4ffb_C 213 VTG 215 (278)
T ss_dssp C--
T ss_pred HhC
Confidence 554
No 91
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=28.41 E-value=2e+02 Score=27.36 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 567 KTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 567 ~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
+.++..|-.-+.+.++.|+..|..++-.+++.|...|..
T Consensus 49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 344555555566778999999999999999999987753
No 92
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.57 E-value=1.8e+02 Score=26.96 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccccccCCCchHHHHHHHh
Q 036770 569 VVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVIVQVGENEPFVSELLSG 621 (1061)
Q Consensus 569 vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~~~~~e~~p~l~~il~~ 621 (1061)
++..|-.-+.+.+|.++..|..++-..++.|...|...- -...|+++++..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~ei--as~~Fl~eL~kl 99 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEV--GKFRFLNELIKV 99 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHH--TSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHH--hhHHHHHHHHHH
Confidence 334444444567899999999999999999998774311 123455554433
No 93
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=24.78 E-value=5.5e+02 Score=25.85 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHHh
Q 036770 13 MDVALLDATVAAFYGTGSKEERTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVIK 79 (1061)
Q Consensus 13 ~di~~l~~av~~ly~~~~~~~r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I~ 79 (1061)
.|.+.+..+...|++...-+.|--|-..|.++...++.|......+....+=.||..++..+...+.
T Consensus 67 ~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~ 133 (240)
T 3l9t_A 67 NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK 133 (240)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH
Confidence 4677778888888876645578788888888844556677777656556666888888888887775
No 94
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=24.49 E-value=58 Score=21.63 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=15.8
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 036770 978 SFPNMTAAEVTQFVDGLL 995 (1061)
Q Consensus 978 ~fp~~~~~q~~~f~~~l~ 995 (1061)
..|+++.+|...|+++|-
T Consensus 14 h~~nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 14 HDPNLNEEQRNAKIKSIR 31 (34)
T ss_dssp HCTTCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHhHHHHHh
Confidence 458999999999999874
No 95
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=23.66 E-value=2.8e+02 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.056 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhcccc
Q 036770 568 TVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVI 605 (1061)
Q Consensus 568 ~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~~ 605 (1061)
.++..|-.-+.+.+|.++..|..++-.+++.|...|..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ 75 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHS 75 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 34444444456778999999999999999999987753
No 96
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=23.64 E-value=2.7e+02 Score=25.67 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=37.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHhhhccc
Q 036770 556 PRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFV 604 (1061)
Q Consensus 556 ~~~l~~~~~~L~~vl~~L~~~~~~~~~~v~~~A~~~f~~i~~~c~~~l~ 604 (1061)
+.|...|.++-+.++..+...+....|.-+-.+.|++-+|++.++.+..
T Consensus 30 T~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~ 78 (145)
T 3d9j_A 30 TKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFG 78 (145)
T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcC
Confidence 4455555556667777777777666777889999999999999998653
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=23.22 E-value=5.4e+02 Score=30.14 Aligned_cols=112 Identities=10% Similarity=0.177 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHh---CCCCHHH---------HHHHHHHHHHHhcCcccHHHHHHHHccCCChHHHHHHHHHHHHHH
Q 036770 11 QPMDVALLDATVAAFY---GTGSKEE---------RTAADQILRDLQNNPDMWLQVVHILQNSKNLNTKFFALQVLEGVI 78 (1061)
Q Consensus 11 ~~~di~~l~~av~~ly---~~~~~~~---------r~~A~~~L~~fq~s~~aw~~~~~iL~~s~~~~~rffaa~~L~~~I 78 (1061)
+.-|.+.+..++++++ ++.+... ..-+..+-..|-+.++.......+|. +.+.++|++++|.|...+
T Consensus 72 d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~ 150 (651)
T 3grl_A 72 DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLL 150 (651)
T ss_dssp CTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHH
Confidence 3468888777777764 4431111 11133444567778888888888884 578999999999999998
Q ss_pred hcccCCCCHHHHHHHHHH--HHHHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHhh
Q 036770 79 KYRWNALPVEQRDGMKNY--ISEVIVQLSSNEASFREERLYVNKLNIILVQILKHE 132 (1061)
Q Consensus 79 ~~~w~~l~~e~~~~lr~~--ll~~l~~~~~~~~~~~~~~~v~~kl~~~la~i~~~~ 132 (1061)
..+ +.+.++.|.+. -+..+.....++ ...|||....+|..+.+..
T Consensus 151 ~~r----~~~~Q~~Il~~p~gi~~Lv~lL~d~-----rE~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 151 KQL----GPQVQQIILVSPMGVSRLMDLLADS-----REVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HHS----HHHHHHHHHHSTTHHHHHHGGGGCS-----SHHHHHHHHHHHHHHHTTC
T ss_pred hcC----cHHHHHHHHhCcccHHHHHHHHhCc-----hHHHHHHHHHHHHHHhcCC
Confidence 764 22233333321 223333332332 2457777777777776654
No 98
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=22.57 E-value=2.8e+02 Score=32.25 Aligned_cols=113 Identities=12% Similarity=0.112 Sum_probs=60.0
Q ss_pred Cccch-hHHHHHHHccCCh-hHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH
Q 036770 135 ARWRS-FIPDLVAAAKTSE-TICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRTDL 212 (1061)
Q Consensus 135 ~~Wp~-~i~~l~~~~~~~~-~~~~~~L~iL~~l~EEv~~~~~~~l~~~r~~~l~~~l~~~~~~I~~~~~~~L~~~~~~~l 212 (1061)
..|.+ -++.+++.+.++. .........|..|+-+ + . .. +..+.+ ...+..+...|. +.++.+
T Consensus 43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~--~---~---~~-k~~V~~------~G~Ip~LV~LL~-s~~~~v 106 (584)
T 3l6x_A 43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR--N---D---KV-KTDVRK------LKGIPVLVGLLD-HPKKEV 106 (584)
T ss_dssp CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--C---H---HH-HHHHHH------TTHHHHHHHGGG-CSSHHH
T ss_pred CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--C---h---HH-HHHHHH------cCCcHHHHHHHC-CCCHHH
Confidence 46643 5777777776643 3444455556655421 0 0 01 111111 112234444444 356677
Q ss_pred HHHHHHHHHhcccc---cCcchhcchhhHHHHHhhCC---CccchHHHHHHHHHHhc
Q 036770 213 IRATLSTLHAFLSW---IPLGYIFESPLLETLLKFFP---MPSYRNLTLQCLTEVGA 263 (1061)
Q Consensus 213 ~~~~L~~l~~~l~w---i~~~~i~~~~ll~~l~~~L~---~~~~~~~a~~cL~ei~~ 263 (1061)
...+..+|.....- -....+.+..-++.+..+|. ++++++.|+.||..+..
T Consensus 107 q~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 77777777665531 11123445566666666654 34567788888888776
No 99
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.13 E-value=4.9e+02 Score=23.95 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHc---cCCChHHHHHHHHHHHHHHhc
Q 036770 34 RTAADQILRDLQNNPDMWLQVVHILQ---NSKNLNTKFFALQVLEGVIKY 80 (1061)
Q Consensus 34 r~~A~~~L~~fq~s~~aw~~~~~iL~---~s~~~~~rffaa~~L~~~I~~ 80 (1061)
-....++...+...+.+-..|...|. .++|+++..+|+.+|+..+++
T Consensus 19 w~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 19 WSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666665554444444442 467899999999999999986
Done!