Query 036772
Match_columns 583
No_of_seqs 525 out of 4583
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 05:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.7E-54 1E-58 505.2 42.8 520 1-557 530-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.5E-33 289.5 22.3 344 14-362 91-464 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.2E-27 2.6E-32 280.9 19.2 344 14-363 186-584 (968)
4 KOG4194 Membrane glycoprotein 99.9 7E-26 1.5E-30 230.9 4.2 304 18-330 80-408 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 3.1E-31 237.1 -6.4 303 14-330 30-355 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2E-26 4.3E-31 236.1 -5.5 303 14-330 53-379 (1255)
7 KOG4194 Membrane glycoprotein 99.9 2.5E-24 5.3E-29 219.7 5.8 303 14-324 100-427 (873)
8 PLN03210 Resistant to P. syrin 99.9 3.8E-21 8.2E-26 227.2 33.2 323 39-378 552-910 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 1.8E-26 4E-31 225.9 -10.2 349 14-376 66-532 (565)
10 KOG0472 Leucine-rich repeat pr 99.9 5E-25 1.1E-29 215.9 -9.9 285 34-324 149-539 (565)
11 KOG0618 Serine/threonine phosp 99.8 1.6E-22 3.5E-27 216.7 -3.3 334 16-361 45-487 (1081)
12 PRK15387 E3 ubiquitin-protein 99.8 1.8E-18 3.9E-23 191.2 17.4 250 46-324 201-456 (788)
13 PRK15387 E3 ubiquitin-protein 99.8 4.8E-18 1E-22 187.9 16.6 258 16-309 201-465 (788)
14 PRK15370 E3 ubiquitin-protein 99.7 6E-17 1.3E-21 180.2 12.4 245 44-323 176-425 (754)
15 KOG0618 Serine/threonine phosp 99.7 6.3E-19 1.4E-23 189.4 -6.1 258 46-325 219-488 (1081)
16 PRK15370 E3 ubiquitin-protein 99.7 2E-16 4.4E-21 176.0 12.3 245 16-303 178-428 (754)
17 KOG4237 Extracellular matrix p 99.6 3.6E-17 7.7E-22 160.9 -2.2 229 37-266 58-359 (498)
18 cd00116 LRR_RI Leucine-rich re 99.5 7.4E-15 1.6E-19 150.5 4.3 244 66-323 21-317 (319)
19 KOG0617 Ras suppressor protein 99.5 4.6E-16 1E-20 136.7 -5.8 48 282-330 142-189 (264)
20 KOG0617 Ras suppressor protein 99.5 2.5E-15 5.4E-20 132.1 -1.6 126 184-323 35-160 (264)
21 cd00116 LRR_RI Leucine-rich re 99.4 3.8E-14 8.3E-19 145.1 1.5 254 38-301 16-318 (319)
22 KOG4237 Extracellular matrix p 99.3 5.9E-14 1.3E-18 138.5 -4.0 118 51-170 51-173 (498)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.8E-11 4E-16 138.7 5.5 247 46-303 523-783 (889)
24 KOG4658 Apoptotic ATPase [Sign 99.0 6.9E-10 1.5E-14 126.1 7.0 259 56-348 511-785 (889)
25 KOG3207 Beta-tubulin folding c 98.9 1.2E-10 2.6E-15 116.9 -3.0 174 66-239 144-336 (505)
26 KOG0532 Leucine-rich repeat (L 98.9 7.6E-11 1.7E-15 121.7 -4.6 212 73-324 55-271 (722)
27 COG4886 Leucine-rich repeat (L 98.9 2.6E-09 5.7E-14 112.9 6.7 173 114-306 116-293 (394)
28 KOG1259 Nischarin, modulator o 98.8 7.3E-10 1.6E-14 106.1 0.5 55 69-124 285-339 (490)
29 COG4886 Leucine-rich repeat (L 98.8 3.8E-09 8.2E-14 111.7 5.7 196 50-249 97-297 (394)
30 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3.1E-14 104.2 1.9 126 181-324 283-410 (490)
31 KOG3207 Beta-tubulin folding c 98.7 5.4E-09 1.2E-13 105.2 3.1 152 66-217 119-283 (505)
32 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.2E-13 94.2 4.4 109 58-170 9-122 (175)
33 KOG1909 Ran GTPase-activating 98.7 3.4E-09 7.4E-14 103.9 0.4 242 66-324 28-309 (382)
34 KOG0532 Leucine-rich repeat (L 98.7 4.8E-10 1E-14 116.0 -6.6 189 47-240 76-271 (722)
35 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.9E-13 92.5 3.6 123 16-145 19-147 (175)
36 KOG1909 Ran GTPase-activating 98.6 4.7E-09 1E-13 102.9 -0.9 248 14-303 28-311 (382)
37 KOG2120 SCF ubiquitin ligase, 98.5 2.3E-09 5E-14 102.8 -5.2 157 69-242 186-351 (419)
38 PLN03150 hypothetical protein; 98.4 5.9E-07 1.3E-11 100.1 8.5 111 207-330 420-532 (623)
39 PLN03150 hypothetical protein; 98.3 1.4E-06 3.1E-11 97.0 8.2 102 70-171 420-525 (623)
40 KOG4341 F-box protein containi 98.3 2E-08 4.2E-13 100.8 -5.9 227 91-328 138-387 (483)
41 PRK15386 type III secretion pr 98.3 2.7E-06 5.8E-11 87.7 9.3 64 133-199 47-112 (426)
42 KOG0531 Protein phosphatase 1, 98.3 1.4E-07 3E-12 100.3 -0.9 102 66-171 93-196 (414)
43 KOG4341 F-box protein containi 98.2 6.9E-08 1.5E-12 96.9 -3.7 248 68-326 138-414 (483)
44 KOG0531 Protein phosphatase 1, 98.2 1.3E-07 2.8E-12 100.5 -2.1 212 46-265 49-267 (414)
45 PRK15386 type III secretion pr 98.2 4.7E-06 1E-10 85.9 8.2 73 41-123 48-121 (426)
46 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 64.9 3.6 56 47-102 2-60 (61)
47 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.7E-12 91.1 -5.6 143 183-325 186-350 (419)
48 PF13855 LRR_8: Leucine rich r 98.0 5.4E-06 1.2E-10 62.3 4.2 58 183-240 2-60 (61)
49 KOG1859 Leucine-rich repeat pr 97.9 1.5E-07 3.2E-12 100.3 -9.4 55 183-239 165-219 (1096)
50 KOG2982 Uncharacterized conser 97.8 1E-05 2.2E-10 78.1 2.9 222 47-298 46-287 (418)
51 PF12799 LRR_4: Leucine Rich r 97.7 2.4E-05 5.2E-10 54.3 2.0 38 269-306 3-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.6 8.1E-07 1.8E-11 94.8 -8.4 101 67-172 186-290 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.6 5E-05 1.1E-09 52.7 3.2 42 290-332 1-42 (44)
54 KOG3665 ZYG-1-like serine/thre 97.5 3.1E-05 6.8E-10 86.4 1.6 130 137-267 121-264 (699)
55 KOG3665 ZYG-1-like serine/thre 97.3 7.7E-05 1.7E-09 83.3 1.5 101 46-147 122-229 (699)
56 KOG1644 U2-associated snRNP A' 97.3 0.00054 1.2E-08 63.0 6.4 120 48-170 21-149 (233)
57 COG5238 RNA1 Ran GTPase-activa 97.1 9.9E-05 2.1E-09 70.6 -0.3 85 67-153 29-134 (388)
58 KOG1947 Leucine rich repeat pr 97.1 6.8E-05 1.5E-09 81.2 -2.3 55 249-303 358-414 (482)
59 KOG2982 Uncharacterized conser 97.1 0.00031 6.7E-09 68.2 2.4 61 269-329 201-265 (418)
60 KOG4579 Leucine-rich repeat (L 97.0 2.6E-05 5.6E-10 67.1 -4.9 98 48-147 29-132 (177)
61 COG5238 RNA1 Ran GTPase-activa 96.9 0.00059 1.3E-08 65.4 3.1 123 201-323 88-252 (388)
62 KOG4579 Leucine-rich repeat (L 96.9 8.9E-05 1.9E-09 63.8 -2.3 103 206-323 28-133 (177)
63 KOG1947 Leucine rich repeat pr 96.9 0.00015 3.2E-09 78.5 -1.6 168 136-303 186-375 (482)
64 KOG1644 U2-associated snRNP A' 96.7 0.0026 5.7E-08 58.6 5.0 107 41-147 37-149 (233)
65 KOG2739 Leucine-rich acidic nu 96.6 0.00087 1.9E-08 64.2 1.5 80 46-125 43-127 (260)
66 KOG2739 Leucine-rich acidic nu 95.6 0.0057 1.2E-07 58.7 1.6 58 67-125 42-102 (260)
67 KOG2123 Uncharacterized conser 95.0 0.0011 2.3E-08 64.0 -5.4 58 47-104 42-101 (388)
68 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.2E-07 34.3 0.5 20 291-310 1-20 (22)
69 KOG2123 Uncharacterized conser 94.5 0.0014 3.1E-08 63.2 -5.9 78 47-125 20-99 (388)
70 PF13306 LRR_5: Leucine rich r 94.0 0.15 3.3E-06 44.0 6.5 12 110-121 77-88 (129)
71 PF13504 LRR_7: Leucine rich r 93.8 0.04 8.6E-07 29.6 1.4 16 291-306 2-17 (17)
72 PF13306 LRR_5: Leucine rich r 93.3 0.27 5.8E-06 42.5 6.8 113 14-140 10-128 (129)
73 PF07725 LRR_3: Leucine Rich R 93.2 0.074 1.6E-06 29.7 1.9 20 69-88 1-20 (20)
74 PF00560 LRR_1: Leucine Rich R 92.9 0.055 1.2E-06 31.2 1.2 19 184-202 2-20 (22)
75 KOG3864 Uncharacterized conser 91.1 0.09 2E-06 48.8 1.0 94 54-147 86-185 (221)
76 PF13504 LRR_7: Leucine rich r 90.4 0.17 3.7E-06 27.1 1.3 16 47-62 2-17 (17)
77 smart00369 LRR_TYP Leucine-ric 88.9 0.37 8.1E-06 28.8 2.2 21 289-309 1-21 (26)
78 smart00370 LRR Leucine-rich re 88.9 0.37 8.1E-06 28.8 2.2 21 289-309 1-21 (26)
79 KOG3864 Uncharacterized conser 86.4 0.14 3.1E-06 47.5 -1.1 62 115-176 102-166 (221)
80 KOG0473 Leucine-rich repeat pr 85.9 0.027 5.9E-07 53.2 -6.1 82 46-127 42-124 (326)
81 KOG4308 LRR-containing protein 83.5 0.016 3.4E-07 62.3 -10.2 80 70-149 89-183 (478)
82 KOG0473 Leucine-rich repeat pr 79.0 0.08 1.7E-06 50.1 -5.8 82 66-148 40-121 (326)
83 KOG4308 LRR-containing protein 78.7 0.055 1.2E-06 58.2 -8.1 54 271-324 237-301 (478)
84 smart00364 LRR_BAC Leucine-ric 77.7 1.5 3.3E-05 26.3 1.4 18 46-63 2-19 (26)
85 smart00367 LRR_CC Leucine-rich 65.8 4.5 9.8E-05 24.1 1.6 13 139-151 3-15 (26)
86 smart00365 LRR_SD22 Leucine-ri 63.0 6 0.00013 23.8 1.7 17 289-305 1-17 (26)
87 PF13516 LRR_6: Leucine Rich r 54.3 6.1 0.00013 22.9 0.7 14 114-127 2-15 (24)
88 KOG3763 mRNA export factor TAP 46.7 12 0.00027 40.2 2.1 35 67-101 217-254 (585)
89 smart00368 LRR_RI Leucine rich 43.2 19 0.00041 21.9 1.7 14 290-303 2-15 (28)
90 PF05725 FNIP: FNIP Repeat; I 41.1 51 0.0011 22.4 3.8 34 43-76 9-42 (44)
91 KOG4242 Predicted myosin-I-bin 33.1 1E+02 0.0023 32.9 6.1 101 46-147 165-277 (553)
92 KOG3763 mRNA export factor TAP 29.4 19 0.0004 38.9 0.1 17 445-461 440-457 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.7e-54 Score=505.24 Aligned_cols=520 Identities=33% Similarity=0.481 Sum_probs=370.9
Q ss_pred CCcceEEEEEecC-------------CCCCcceEEEecCCCC-CCccceecCCcccccCCCccEEEecCCCCCCCCCCCC
Q 036772 1 GSEAIEGISLDMF-------------RMRRLRFFKFYNSFPE-MNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNI 66 (583)
Q Consensus 1 G~~~ve~i~ld~~-------------~m~~Lr~L~l~~~~~~-~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~ 66 (583)
||++|+||.+|++ +|++|++|+++.+.+. ......++|+++..+|.+||+|+|++|+++.+|+.|.
T Consensus 530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~ 609 (1153)
T PLN03210 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR 609 (1153)
T ss_pred ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence 7899999999975 8999999999876421 1234578999999999999999999999999999999
Q ss_pred CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 146 (583)
+++|++|+|++++++.+|.+++.+++|+.|+|++|..+..+|+++.+++|+.|+|++|..+..+|.+++++++|+.|+++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCc------c
Q 036772 147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLK------S 220 (583)
Q Consensus 147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~------~ 220 (583)
+|+.++.+|..+++++|+.|++++|..++.+|....+|+.|++++|.++.+|..+ .+++|+.|.+.++.... .
T Consensus 690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccc
Confidence 9999999999889999999999999999999999999999999999999998754 45556655555432110 0
Q ss_pred c-cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc---------ccCccEEEeccCCC-cccCccCCCC
Q 036772 221 V-SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI---------SQNLVDMSLVDCGI-TELPESLGRS 289 (583)
Q Consensus 221 l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i---------~~~L~~L~L~~~~l-~~lp~~l~~l 289 (583)
+ +......++|+.|++++|..+..+|..++++++|+.|++++|.. ...|+.|++++|.. ..+|.. .
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---c
Confidence 0 01111234555555555555555555555555555555555421 01255566666532 223332 2
Q ss_pred CCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCC----eeeeeCCcCcccccCcc---c-cccccc-
Q 036772 290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS----NIFARYCTSLETLSNLS---T-LFTRSS- 360 (583)
Q Consensus 290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~----~l~~~~c~sL~~l~~l~---~-l~~~~~- 360 (583)
++|+.|+|++|.++.+|.++..+++|+.|++++|++|+.+|.....+ .+...+|.+|+.++... . .....+
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~ 925 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI 925 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence 46666667666666666666666677777776666666665432221 44555666665432100 0 000000
Q ss_pred ----ccceeeeecccccCCccchhhhhHHHHHHHHHHhhhhccCCCccccccCCCCCceEEEccCCCCCCcccccCCCcE
Q 036772 361 ----ELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSS 436 (583)
Q Consensus 361 ----~~~~~l~~~~C~~L~~~~~~~l~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~s 436 (583)
.....+.|.+|++|++.+. + + .. .....+++||.++|+||.||+.|++
T Consensus 926 ~~~~p~~~~l~f~nC~~L~~~a~-------l------~-----~~----------~~~~~~~l~g~evp~~f~hr~~g~s 977 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLDQEAL-------L------Q-----QQ----------SIFKQLILSGEEVPSYFTHRTTGAS 977 (1153)
T ss_pred cccCCchhccccccccCCCchhh-------h------c-----cc----------ccceEEECCCccCchhccCCcccce
Confidence 0012346889999977531 1 1 00 1123478999999999999999999
Q ss_pred EE-EEcCCCCCCCccceEEEEEEEecCCCC--CCceEEEEEEEEcCCCCeEEEEeEEeccCCCCccCCCeEEEEe-eccc
Q 036772 437 VT-LELPPGWVNNNFVGFALCAIVPDHHGD--TRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGY-DFSV 512 (583)
Q Consensus 437 i~-~~lp~~~~~~~~~gf~~c~v~~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~dh~~~~~-~~~~ 512 (583)
++ |.+|+.|....|.||++|+|+++.... ...+.+.|.|+|+++.|++++. ....+........+|+++|. ....
T Consensus 978 l~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 1056 (1153)
T PLN03210 978 LTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDS-PYQPHVFSVTKKGSHLVIFDCCFPL 1056 (1153)
T ss_pred eeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcccc-CCCceeEeeeccccceEEecccccc
Confidence 98 999999998889999999999887632 2367888899988877765432 00000011123455666555 2111
Q ss_pred cccC---CCCCCceEEEEEEEeeecCCCcCCeEEEEeecEEEeecCCC
Q 036772 513 SSDS---FGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPS 557 (583)
Q Consensus 513 ~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~v~~cgv~~~~~~~~~ 557 (583)
..+. .+..|+|++|+|.+. +. ...++||+|||+++|+.+..
T Consensus 1057 ~~~~~~~~~~~~~~~~~~f~~~---~~-~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1057 NEDNAPLAELNYDHVDIQFRLT---NK-NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred cccccchhccCCceeeEEEEEe---cC-CCCeEEEeeeEEEeccCCCc
Confidence 1111 123589999999983 32 23489999999999966554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=289.50 Aligned_cols=344 Identities=22% Similarity=0.251 Sum_probs=274.0
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChh-hhcccccCCCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNGVQNLAA 92 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~ 92 (583)
++++|+.|++++|. ....+|.++..-..+||+|++++|.+....+...+++|++|++++|.+. .+|..+..+++
T Consensus 91 ~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 91 RLPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred CCCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 78899999999885 3456787766333699999999998864433456789999999999987 67788999999
Q ss_pred ccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecC
Q 036772 93 LKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGG 170 (583)
Q Consensus 93 L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~ 170 (583)
|++|+|++|.....+| .+..+++|++|+|++|.....+|..++.+++|+.|+|++|.....+|..+ ++++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 9999999998877777 48899999999999998888889999999999999999977667788877 899999999999
Q ss_pred CCCccccccc---CCCcCEEeccCCCCc-cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccc
Q 036772 171 CSNLKRFLEI---SCNIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLP 246 (583)
Q Consensus 171 c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp 246 (583)
|.....+|.. +.+|+.|++++|.+. .+|.++..+++|++|++++|.....+|..+.++++|+.|++++|...+..|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 8765555543 457888999999886 578888899999999999988877888888899999999999988888888
Q ss_pred cccCCCCcccEEEccCCcccc----------CccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc-ccChhhhccCc
Q 036772 247 EEIGNLESLKIMLANETAISQ----------NLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSN 314 (583)
Q Consensus 247 ~~l~~l~~L~~L~l~~~~i~~----------~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~ 314 (583)
..+..+++|+.|++++|.+.. .|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 888999999999999887753 28889999998875 7788888888999999888877 67888888888
Q ss_pred ccccccccccccccCCC----CCCCCeeeeeCC-------cCcccccCccccccccccc
Q 036772 315 LLFLTLQNCKRLQSLPE----LPCGSNIFARYC-------TSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 315 L~~L~L~~c~~L~~lp~----lp~~~~l~~~~c-------~sL~~l~~l~~l~~~~~~~ 362 (583)
|+.|++++|.--..+|. ++....+...++ ..+..+++|+.+.+..+.+
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 99999888854444442 222223333322 1233456666776665554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.2e-27 Score=280.89 Aligned_cols=344 Identities=22% Similarity=0.248 Sum_probs=218.3
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-CCCCCC-CCCCceEEEccCCChh-hhcccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-SLPSKN-IPEHLVSLEMPHSNIE-QLWNGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~l~-~l~~~~~~l 90 (583)
++++|++|++++|. ....+|..+..+ .+|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+.++
T Consensus 186 ~l~~L~~L~L~~n~-----l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 186 NLTSLEFLTLASNQ-----LVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hCcCCCeeeccCCC-----CcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 67788888887775 344566677666 47777777777765 455554 6677777777777765 455666777
Q ss_pred CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEe
Q 036772 91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYL 168 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 168 (583)
++|+.|+|++|.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 777777777776555555 35666666666666666555566666666666666666655444555544 5666666666
Q ss_pred cCCCCccccccc---CCCcCEEeccCCCC------------------------c-cccccccCCCCccEEeeeCCCCCcc
Q 036772 169 GGCSNLKRFLEI---SCNIENLDLSETAI------------------------E-ELPSSIGNLSRLVRLDLTNCSRLKS 220 (583)
Q Consensus 169 ~~c~~l~~~~~~---~~~L~~L~L~~~~i------------------------~-~lp~~i~~l~~L~~L~L~~~~~l~~ 220 (583)
++|.....+|.. ..+|+.|++++|.+ . .+|..++.+++|+.|++++|.....
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 655443333322 23444455544444 3 3444455566666666666665555
Q ss_pred ccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc---------CccEEEeccCCCcc-cCccCCCCC
Q 036772 221 VSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ---------NLVDMSLVDCGITE-LPESLGRSP 290 (583)
Q Consensus 221 lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---------~L~~L~L~~~~l~~-lp~~l~~l~ 290 (583)
+|..+..++.|+.|++++|...+.+|..+..+++|+.|++++|.+.. .|+.|++++|.+.+ +|..+..++
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 499 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS 499 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence 66666666666677776666666666666667777777777766542 27778888887775 667777888
Q ss_pred CCCEEEccCCCCc-ccChhhhccCcccccccccccccccCCC----CCCCCeeeeeCCc-------CcccccCccccccc
Q 036772 291 SLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE----LPCGSNIFARYCT-------SLETLSNLSTLFTR 358 (583)
Q Consensus 291 ~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~l~~~~c~-------sL~~l~~l~~l~~~ 358 (583)
+|+.|+|++|.+. .+|..+..+++|+.|+|++|.-...+|. ++....+...++. .+..++.|+.+.+.
T Consensus 500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 8888888888876 6777788888888888888755444442 2222244443332 34445566667666
Q ss_pred ccccc
Q 036772 359 SSELW 363 (583)
Q Consensus 359 ~~~~~ 363 (583)
.|.+.
T Consensus 580 ~N~l~ 584 (968)
T PLN00113 580 HNHLH 584 (968)
T ss_pred CCcce
Confidence 66554
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=7e-26 Score=230.89 Aligned_cols=304 Identities=22% Similarity=0.234 Sum_probs=233.3
Q ss_pred cceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhc-ccccCCCCccE
Q 036772 18 LRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKR 95 (583)
Q Consensus 18 Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~ 95 (583)
-+.|++++|. ....-+.++..+| +|+.+++..|.++.+|... ...+|+.|+|.+|.|..+- +.++.++.|++
T Consensus 80 t~~LdlsnNk-----l~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 80 TQTLDLSNNK-----LSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeeeccccc-----cccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 4669999885 2223345667775 9999999999999999877 4556999999999998775 34889999999
Q ss_pred EeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCC
Q 036772 96 LNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171 (583)
Q Consensus 96 L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c 171 (583)
||||.|. +..+| .|..-.++++|+|++|.+...--..|..+.+|..|.|+. +.++.+|... .++.|+.|+|..|
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence 9999995 44444 577778999999999876665556788899999999988 6788888765 5999999999875
Q ss_pred CCc-c--cccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772 172 SNL-K--RFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247 (583)
Q Consensus 172 ~~l-~--~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 247 (583)
..- . .-...+.+|+.|.+..|.|..+... +-.+.++++|+|+.|.....-..++.+++.|+.|+++.|..-..-++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 421 1 1235567888888888888887654 67788889999988877666667888888999999988877777778
Q ss_pred ccCCCCcccEEEccCCccccC----------ccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCc----ccChhhhcc
Q 036772 248 EIGNLESLKIMLANETAISQN----------LVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFE----KIPSSIKQL 312 (583)
Q Consensus 248 ~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~----~lp~~i~~l 312 (583)
.+...++|+.|+++.|+|... |++|.|++|.+..+- ..+..+++|++|||+.|.+. +-...+..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 888888888888888888764 777888888777755 35667777777887777755 222334557
Q ss_pred CcccccccccccccccCC
Q 036772 313 SNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 313 ~~L~~L~L~~c~~L~~lp 330 (583)
++|+.|.+.++ ++++||
T Consensus 392 ~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 392 PSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred hhhhheeecCc-eeeecc
Confidence 77777777776 566666
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.4e-26 Score=237.11 Aligned_cols=303 Identities=25% Similarity=0.343 Sum_probs=134.0
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChh--hhcccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIE--QLWNGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~--~l~~~~~~l 90 (583)
.|.+++-|++... ....+|+.+..+ .+|++|.+++|.+.++-... .++.|+.++++.|+++ .+|..+-++
T Consensus 30 qMt~~~WLkLnrt------~L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRT------KLEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred HhhheeEEEechh------hhhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 4444444544332 233444444444 34444444444444433322 3444444444444444 244444444
Q ss_pred CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEE
Q 036772 91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLY 167 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 167 (583)
..|.+||||+|+ +.+.| .+..+.++-.|+|++|+ +..+|.+ +-+++.|-+|||++ +++..+|+.+ .+..|++|+
T Consensus 103 ~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhh
Confidence 444555555443 22333 34444444445554432 3333322 23444444555544 3444444444 444555555
Q ss_pred ecCCCC----cccccccCCCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCC
Q 036772 168 LGGCSN----LKRFLEISCNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241 (583)
Q Consensus 168 L~~c~~----l~~~~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 241 (583)
|++|+. ++++| .++.|+.|.+++++-+ .+|.++..+.+|..++++.| .+..+|..+.++++|+.|++++|.
T Consensus 180 Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~- 256 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK- 256 (1255)
T ss_pred cCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-
Confidence 554432 12222 1233444444444322 44444555555555555442 233444445555555555555432
Q ss_pred CCccccccCCCCcccEEEccCCccccC---------ccEEEeccCCCc--ccCccCCCCCCCCEEEccCCCCcccChhhh
Q 036772 242 LEKLPEEIGNLESLKIMLANETAISQN---------LVDMSLVDCGIT--ELPESLGRSPSLKFLNLAENDFEKIPSSIK 310 (583)
Q Consensus 242 l~~lp~~l~~l~~L~~L~l~~~~i~~~---------L~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~ 310 (583)
++.+....+...+|++|+++.|++... |+.|.+.+|+++ ++|..++.+..|+.+..++|.++-+|.++.
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc 336 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC 336 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh
Confidence 222222333344444444444444332 444444444332 255555555555555555555555555555
Q ss_pred ccCcccccccccccccccCC
Q 036772 311 QLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 311 ~l~~L~~L~L~~c~~L~~lp 330 (583)
.|.+|+.|.|+.+ +|-.+|
T Consensus 337 RC~kL~kL~L~~N-rLiTLP 355 (1255)
T KOG0444|consen 337 RCVKLQKLKLDHN-RLITLP 355 (1255)
T ss_pred hhHHHHHhccccc-ceeech
Confidence 5555555555443 344444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2e-26 Score=236.07 Aligned_cols=303 Identities=25% Similarity=0.339 Sum_probs=178.0
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC--CCCCC-CCCCCceEEEccCCChhhhcccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK--SLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l 90 (583)
.+.+|..|.+++| ....+-+.+..+| .||.+.+..|.++ .+|.. |.++.|..|||++|+++..|.++...
T Consensus 53 ~lqkLEHLs~~HN------~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A 125 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHN------QLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA 125 (1255)
T ss_pred HHhhhhhhhhhhh------hhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhh
Confidence 5556666666665 3344455555553 5666666666553 34544 36666666666666666666666666
Q ss_pred CCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC----CCcCCCcCCCCCcc
Q 036772 91 AALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS----LKSLPTGINLDSLK 164 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~----l~~lp~~~~l~~L~ 164 (583)
.++-+|+||+|.+ ..+|. +..++.|-.|+|++| .+..+|+.+..+..|++|+|+++.. ++.+| .+++|+
T Consensus 126 Kn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP---smtsL~ 200 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP---SMTSLS 200 (1255)
T ss_pred cCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---cchhhh
Confidence 6666666666643 33332 455556666666653 3455566666666666666665432 22233 245555
Q ss_pred EEEecCCCC-cccccc---cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 165 VLYLGGCSN-LKRFLE---ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 165 ~L~L~~c~~-l~~~~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
+|.+++... +..+|. .+.+|+.++++.|.+..+|..+-++++|+.|+|++|+. +.+.-......+|++|+++.|
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN- 278 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN- 278 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-
Confidence 555555321 222332 22345555555555555555555555555555555433 223333334445555555552
Q ss_pred CCCccccccCCCCcccEEEccCCccccC-----------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhh
Q 036772 241 KLEKLPEEIGNLESLKIMLANETAISQN-----------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI 309 (583)
Q Consensus 241 ~l~~lp~~l~~l~~L~~L~l~~~~i~~~-----------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i 309 (583)
.+..+|+.+..++.|+.|.+.+|.+.-. |+.+...+|.+.-+|+.+..|..|+.|.|+.|++.++|..|
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI 358 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI 358 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh
Confidence 3444555555555555555555443321 45555566666668999999999999999999999999999
Q ss_pred hccCcccccccccccccccCC
Q 036772 310 KQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 310 ~~l~~L~~L~L~~c~~L~~lp 330 (583)
.-|+.|+.|++..+++|.--|
T Consensus 359 HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhcCCcceeeccCCcCccCCC
Confidence 999999999999998876544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-24 Score=219.71 Aligned_cols=303 Identities=20% Similarity=0.167 Sum_probs=234.9
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l 90 (583)
++.+|+.+.+.+| ....+|..-... .+|+.|++.+|.+.++.+.- .++.|+.|||+.|.|..++.. +..-
T Consensus 100 nl~nLq~v~l~~N------~Lt~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 100 NLPNLQEVNLNKN------ELTRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred cCCcceeeeeccc------hhhhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence 8899999999887 566777666555 58999999999988887653 577899999999999988765 6667
Q ss_pred CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEE
Q 036772 91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLY 167 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~ 167 (583)
.++++|+|++|++.+.-. .|..+.+|..|.|+.|....--+.+|.+|++|+.|+|.. +.++.+-. .+ ++++|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhh
Confidence 889999999997665444 488888999999998765444445778899999999987 55655532 23 788999998
Q ss_pred ecCCCCcc---cccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC
Q 036772 168 LGGCSNLK---RFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE 243 (583)
Q Consensus 168 L~~c~~l~---~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~ 243 (583)
|..|...+ ...-.+.+|++|+|..|++..+.. ++-+++.|+.|++++|.+...-+++....++|+.|+++.|....
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 88754221 122345688889999988887754 46778889999999888877777788888899999999877666
Q ss_pred ccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCcc-c---CccCCCCCCCCEEEccCCCCcccCh-h
Q 036772 244 KLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITE-L---PESLGRSPSLKFLNLAENDFEKIPS-S 308 (583)
Q Consensus 244 ~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~-l---p~~l~~l~~L~~L~Ls~n~l~~lp~-~ 308 (583)
--+..+..+..|+.|.+++|.+... |+.|+|++|.+.. + ...+..+++|+.|++.||+++.+|. .
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 6666778888888899998887643 8888888887765 2 2345678999999999999998884 4
Q ss_pred hhccCccccccccccc
Q 036772 309 IKQLSNLLFLTLQNCK 324 (583)
Q Consensus 309 i~~l~~L~~L~L~~c~ 324 (583)
+..++.|+.|+|.++.
T Consensus 412 fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNA 427 (873)
T ss_pred hccCcccceecCCCCc
Confidence 7788999999998873
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3.8e-21 Score=227.19 Aligned_cols=323 Identities=21% Similarity=0.288 Sum_probs=244.7
Q ss_pred CcccccCCCccEEEecCCCC-------CCCCCCC--CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC
Q 036772 39 RCLESFFNELRYFQWDGYPL-------KSLPSKN--IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD 109 (583)
Q Consensus 39 ~~l~~l~~~Lr~L~l~~~~l-------~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~ 109 (583)
..+..+ ++|++|.+..+.. ..+|..+ .+.+|+.|++.++.++.+|..+ ...+|+.|++++|+.......
T Consensus 552 ~aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcC-ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence 356666 6899999976532 2466655 4567999999999999999887 579999999999964443335
Q ss_pred CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccccc--CCCcCE
Q 036772 110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEI--SCNIEN 186 (583)
Q Consensus 110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~--~~~L~~ 186 (583)
+..+++|+.|+|++|..+..+|. +..+++|+.|+|++|..+..+|..+ .+++|+.|++++|..++.+|.. +.+|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 88899999999999988888874 8889999999999999999999988 8999999999999999999874 568999
Q ss_pred EeccCCC-CccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC------cc-ccccCCCCcccEE
Q 036772 187 LDLSETA-IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE------KL-PEEIGNLESLKIM 258 (583)
Q Consensus 187 L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~------~l-p~~l~~l~~L~~L 258 (583)
|+++++. ++.+|. ...+|+.|+++++. ...+|..+ .+++|++|.+.++.... .+ +......++|+.|
T Consensus 709 L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 709 LNLSGCSRLKSFPD---ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred EeCCCCCCcccccc---ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 9999874 445554 24689999999876 45677655 58889999888754211 11 1122234689999
Q ss_pred EccCCcccc----------CccEEEeccCC-CcccCccCCCCCCCCEEEccCCC-CcccChhhhccCccccccccccccc
Q 036772 259 LANETAISQ----------NLVDMSLVDCG-ITELPESLGRSPSLKFLNLAEND-FEKIPSSIKQLSNLLFLTLQNCKRL 326 (583)
Q Consensus 259 ~l~~~~i~~----------~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~i~~l~~L~~L~L~~c~~L 326 (583)
++++|.... .|+.|++++|. +..+|..+ .+++|+.|++++|. +..+|.. .++|+.|+++++ .+
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i 858 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GI 858 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CC
Confidence 999875322 28999999985 56688766 78999999999986 5566643 368999999886 56
Q ss_pred ccCCC----CCCCCeeeeeCCcCcccccCcccccccccccceeeeecccccCCccc
Q 036772 327 QSLPE----LPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNE 378 (583)
Q Consensus 327 ~~lp~----lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~~l~~~~C~~L~~~~ 378 (583)
+.+|. ++....+...+|..|+.++... ..-..+..+++.+|.+|....
T Consensus 859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~----~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI----SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccChHHHhcCCCCCEEECCCCCCcCccCccc----ccccCCCeeecCCCccccccc
Confidence 66662 3333378888898888775421 111234567889999886543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.8e-26 Score=225.91 Aligned_cols=349 Identities=25% Similarity=0.345 Sum_probs=202.3
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAA 92 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~ 92 (583)
++..|.+|.+++| ...++|..+..+ ..++.|+.+.+++..+|... ....|+.|+.++|.+..+++++..+-.
T Consensus 66 nL~~l~vl~~~~n------~l~~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 66 NLACLTVLNVHDN------KLSQLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred cccceeEEEeccc------hhhhCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 4445555555554 344455555444 34555555555555554433 444455555555555555555555555
Q ss_pred ccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCC
Q 036772 93 LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGC 171 (583)
Q Consensus 93 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c 171 (583)
|..++..+|...+-.+++..+.+|..|++.++. +..+|+..-.++.|++||... +.++.+|..+ .+.+|+-|++..
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~- 215 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR- 215 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-
Confidence 555555544444433344444455555555533 223333222255666666544 4556666666 566666666665
Q ss_pred CCcccccccCC--CcCEEeccCCCCcccccccc-CCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772 172 SNLKRFLEISC--NIENLDLSETAIEELPSSIG-NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE 248 (583)
Q Consensus 172 ~~l~~~~~~~~--~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 248 (583)
+++..+|+..+ .|++|+++.|.|+-+|..+. +++++..||+.+|+ +++.|..++.+++|++||+++| .+..+|..
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~s 293 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYS 293 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence 34445554332 45666666666666666544 67777777777754 4667777777777777777764 45667777
Q ss_pred cCCCCcccEEEccCCccccC------------------------------------------------------------
Q 036772 249 IGNLESLKIMLANETAISQN------------------------------------------------------------ 268 (583)
Q Consensus 249 l~~l~~L~~L~l~~~~i~~~------------------------------------------------------------ 268 (583)
++++ +|+.|.+.||.+...
T Consensus 294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK 372 (565)
T ss_pred cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence 7777 777777777765321
Q ss_pred -----------------ccEEEeccCC------------------------CcccCccCCCCCCCCEEEccCCCCcccCh
Q 036772 269 -----------------LVDMSLVDCG------------------------ITELPESLGRSPSLKFLNLAENDFEKIPS 307 (583)
Q Consensus 269 -----------------L~~L~L~~~~------------------------l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 307 (583)
....+++.|+ +.-+|..+..+++|..|+|++|-+.++|.
T Consensus 373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~ 452 (565)
T KOG0472|consen 373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE 452 (565)
T ss_pred ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence 2333344333 33344555677888888888888888888
Q ss_pred hhhccCcccccccccccccccCCCCC----------CC-CeeeeeCCcCcccccCccccccccccccee-eeecccccCC
Q 036772 308 SIKQLSNLLFLTLQNCKRLQSLPELP----------CG-SNIFARYCTSLETLSNLSTLFTRSSELWQA-FDFCNCFKLN 375 (583)
Q Consensus 308 ~i~~l~~L~~L~L~~c~~L~~lp~lp----------~~-~~l~~~~c~sL~~l~~l~~l~~~~~~~~~~-l~~~~C~~L~ 375 (583)
..+.+..|+.|+++.+ +.+.+|+.- .+ ..+...+-..+..+.+|..+++..|.+... -.+.||.+|.
T Consensus 453 e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccccee
Confidence 8888888888888887 555555321 11 122222334477778888888877776432 1245666654
Q ss_pred c
Q 036772 376 R 376 (583)
Q Consensus 376 ~ 376 (583)
.
T Consensus 532 h 532 (565)
T KOG0472|consen 532 H 532 (565)
T ss_pred E
Confidence 3
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=5e-25 Score=215.88 Aligned_cols=285 Identities=25% Similarity=0.309 Sum_probs=170.1
Q ss_pred ceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCC
Q 036772 34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSL 112 (583)
Q Consensus 34 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~ 112 (583)
...+|+++..+. +|..|++.++.++++|+.. .++.|++||...|.++.+|+.++.+.+|.-|+|..|+ +..+|.|.+
T Consensus 149 i~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~g 226 (565)
T KOG0472|consen 149 ISSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPG 226 (565)
T ss_pred cccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCc
Confidence 344555555552 5555556666666555543 5566666666666666666666666666666666664 444556666
Q ss_pred CCCcCEEeeeCCCCchhhhhhc-cCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCC--cCEEe
Q 036772 113 ALNLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCN--IENLD 188 (583)
Q Consensus 113 l~~L~~L~L~~~~~l~~~~~~i-~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~--L~~L~ 188 (583)
+..|.+|.+..| .+..+|... .++.+|..|||++ ++++++|.++ .+++|+.||++++ .+..+|..+++ |+.|.
T Consensus 227 cs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~ 303 (565)
T KOG0472|consen 227 CSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLA 303 (565)
T ss_pred cHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehh
Confidence 665555555553 234455444 3777888888877 6777888777 6777778877763 33333333332 22233
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 036772 189 LSETAI-------------------------------------------------------------------------- 194 (583)
Q Consensus 189 L~~~~i-------------------------------------------------------------------------- 194 (583)
+.||.+
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 333333
Q ss_pred -----------------ccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccE
Q 036772 195 -----------------EELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKI 257 (583)
Q Consensus 195 -----------------~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~ 257 (583)
.++|..+..++.+.+.-+.+++...-+|..++.++.|..|++++ +.+..+|..++.+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhhe
Confidence 22222222222222222222233333455566677777777775 456677777777777777
Q ss_pred EEccCCccccC---------ccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772 258 MLANETAISQN---------LVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 258 L~l~~~~i~~~---------L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 324 (583)
|+++.|.+... ++.+..+++++..++.. +..+.+|..|||.+|.+..+|+.++++.+|+.|++++++
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 77777766543 55555566777776644 777777777777777777777777777777777777763
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-22 Score=216.70 Aligned_cols=334 Identities=21% Similarity=0.215 Sum_probs=236.2
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCcc
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALK 94 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~ 94 (583)
-+|+.|++++| ....+|..+..++ +|+.|+++.|-+.++|... .+.+|++|.|.+|.+..+|.++..+.+|+
T Consensus 45 v~L~~l~lsnn------~~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 45 VKLKSLDLSNN------QISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred eeeEEeecccc------ccccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 34999999998 6788999999885 9999999999999999776 89999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCCCCCCCCcCEEeee-------------------CCCCchhhhhhccCCCCCCEEEccCCCCC----
Q 036772 95 RLNLSYCKQLSRIPDLSLALNLEWLDLV-------------------GCASLIEIHSSIQHLNKLVFLNLGRCISL---- 151 (583)
Q Consensus 95 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~-------------------~~~~l~~~~~~i~~l~~L~~L~L~~c~~l---- 151 (583)
.|++++|.+....+-+..++.++.+..+ .+.....++..+..++. .|+|+++...
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 9999999765543334444444444444 44433444444444444 4666664322
Q ss_pred ------CcCCC------c--CCCCCccEEEecCCCCccccccc-CCCcCEEeccCCCCccccccccCCCCccEEeeeCCC
Q 036772 152 ------KSLPT------G--INLDSLKVLYLGGCSNLKRFLEI-SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCS 216 (583)
Q Consensus 152 ------~~lp~------~--~~l~~L~~L~L~~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~ 216 (583)
+.+-- . +..++|+.|+...|......+.. ..+|+.++++.+.++.+|++++.+.+|+.++..+|.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence 11100 0 02345566666665555433333 347889999999999999989999999999998876
Q ss_pred CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC----------------------------
Q 036772 217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN---------------------------- 268 (583)
Q Consensus 217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~---------------------------- 268 (583)
. ..+|..+....+|+.|.+..| .++.+|+....+++|+.|++..|.+...
T Consensus 276 l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 276 L-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred H-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 5 556666666666666666553 3555566666666666666666555432
Q ss_pred -------------------------------ccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhhhccCccc
Q 036772 269 -------------------------------LVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLL 316 (583)
Q Consensus 269 -------------------------------L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~ 316 (583)
|+.|+|++|++..+|. .+.+++.|++|+|+||+++.||..+..+..|+
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 8899999999998884 57788999999999999999999999999999
Q ss_pred ccccccccccccCCCCCCCC--eeeeeCCcCcccc--------cCcccccccccc
Q 036772 317 FLTLQNCKRLQSLPELPCGS--NIFARYCTSLETL--------SNLSTLFTRSSE 361 (583)
Q Consensus 317 ~L~L~~c~~L~~lp~lp~~~--~l~~~~c~sL~~l--------~~l~~l~~~~~~ 361 (583)
.|...++ ++..+|++..+- ......|..|+.+ ++|+.+++.+|.
T Consensus 434 tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9988776 677777654332 2233355555543 345666665554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.8e-18 Score=191.20 Aligned_cols=250 Identities=21% Similarity=0.241 Sum_probs=162.4
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~ 125 (583)
+.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|+ ++.+|.+ .++|+.|++.+|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCc
Confidence 345567777777777776543 4677777777777777652 4677777777774 3345532 3567777777764
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS 205 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 205 (583)
+..+|.. ..+|+.|++++ +.++.+|. .+++|+.|++++| .+..+|..+.+|+.|++++|.++.+|.. ..
T Consensus 274 -L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~ 342 (788)
T PRK15387 274 -LTHLPAL---PSGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PS 342 (788)
T ss_pred -hhhhhhc---hhhcCEEECcC-Cccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cc
Confidence 3444442 24566777766 35666665 2466777777775 5555666666677777777777766641 24
Q ss_pred CccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCCC
Q 036772 206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCGI 279 (583)
Q Consensus 206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~l 279 (583)
+|+.|++++|... .+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+.. .|+.|++++|.+
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~L 414 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 414 (788)
T ss_pred ccceEecCCCccC-CCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcC
Confidence 6777777775443 44542 2356666666643 3445543 2456677777766553 277788888888
Q ss_pred cccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772 280 TELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 280 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 324 (583)
+.+|.. ..+|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus 415 ssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 415 TSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 877753 346788888888888888888888888888888874
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=4.8e-18 Score=187.87 Aligned_cols=258 Identities=23% Similarity=0.258 Sum_probs=192.9
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 95 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 95 (583)
.+-..|+++++. ...+|..+ +.+|+.|.+.+|.++.+|. .+++|++|++++|+++.+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~------LtsLP~~l---~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESG------LTTLPDCL---PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCC------CCcCCcch---hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccce
Confidence 345677887764 23566654 3579999999999999886 367899999999999988753 468889
Q ss_pred EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772 96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK 175 (583)
Q Consensus 96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 175 (583)
|++++|. +..+|.+ ..+|+.|++++|. +..+|. .+++|+.|++++| .++.+|.. ..+|+.|++++| .+.
T Consensus 267 L~Ls~N~-L~~Lp~l--p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~ 335 (788)
T PRK15387 267 LSIFSNP-LTHLPAL--PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLT 335 (788)
T ss_pred eeccCCc-hhhhhhc--hhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC--cccccccccccC-ccc
Confidence 9999885 4455542 3578889998875 445554 3468999999884 67777652 346788888874 556
Q ss_pred cccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcc
Q 036772 176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL 255 (583)
Q Consensus 176 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 255 (583)
.+|....+|+.|++++|.++.+|.. .++|+.|++++|.. ..+|.. ..+|+.|++++|. +..+|.. .++|
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L 404 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNR-LTSLPVL---PSEL 404 (788)
T ss_pred cccccccccceEecCCCccCCCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCc-ccCCCCc---ccCC
Confidence 6777677899999999999988863 35778888888654 456653 3568899998875 4456653 3578
Q ss_pred cEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhh
Q 036772 256 KIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSI 309 (583)
Q Consensus 256 ~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i 309 (583)
+.|++++|.+.. .|+.|++++|+++.+|..+..+++|+.|+|++|.++ ..|..+
T Consensus 405 ~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 888999988765 278899999999999999999999999999999988 334333
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=6e-17 Score=180.21 Aligned_cols=245 Identities=20% Similarity=0.306 Sum_probs=156.9
Q ss_pred cCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeC
Q 036772 44 FFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVG 123 (583)
Q Consensus 44 l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 123 (583)
+..+...|+++++.++++|..+ +++|+.|++++|+++.+|..+. .+|+.|++++|. ++.+|. ....+|+.|+|++
T Consensus 176 l~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~ 250 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSI 250 (754)
T ss_pred cccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCCh-hhhccccEEECcC
Confidence 3456778888888888888654 4678888888888888877653 588888888885 445553 1124788888888
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC-CCcCEEeccCCCCcccccccc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS-CNIENLDLSETAIEELPSSIG 202 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~-~~L~~L~L~~~~i~~lp~~i~ 202 (583)
|.. ..+|..+. .+|+.|++++ +.++.+|..+ .++|+.|++++| ++..+|..+ .+|+.|++++|.++.+|..+.
T Consensus 251 N~L-~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~ 324 (754)
T PRK15370 251 NRI-TELPERLP--SALQSLDLFH-NKISCLPENL-PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP 324 (754)
T ss_pred Ccc-CcCChhHh--CCCCEEECcC-CccCcccccc-CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc
Confidence 764 46666553 4788888875 5677777655 357888888885 455565433 467778888888887776443
Q ss_pred CCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCccc
Q 036772 203 NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITEL 282 (583)
Q Consensus 203 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l 282 (583)
++|+.|++++|.. ..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. ++.+
T Consensus 325 --~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~--------------Lt~L 382 (754)
T PRK15370 325 --PGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA--------------LTNL 382 (754)
T ss_pred --ccceeccccCCcc-ccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc--------------CCCC
Confidence 6788888888754 34665553 578888888765 345565442 344444444444 4444
Q ss_pred CccCCCCCCCCEEEccCCCCcccChhhhc----cCcccccccccc
Q 036772 283 PESLGRSPSLKFLNLAENDFEKIPSSIKQ----LSNLLFLTLQNC 323 (583)
Q Consensus 283 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~----l~~L~~L~L~~c 323 (583)
|..+. .+|+.|++++|+++.+|..+.. ++.+..|++.++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 44332 2455555555555555443322 244455555544
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=6.3e-19 Score=189.43 Aligned_cols=258 Identities=27% Similarity=0.363 Sum_probs=191.5
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
.+|+.|..+.|++..+-..+.+.+|+.+++++|++..+|+.+..+.+|+.+++.+|.. ..+| .+...++|+.|.+..|
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh
Confidence 4788888888988877666789999999999999999998899999999999999976 5666 5888899999999986
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--C-CCCccEEEecCCCCccccccc----CCCcCEEeccCCCCcc-
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--N-LDSLKVLYLGGCSNLKRFLEI----SCNIENLDLSETAIEE- 196 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~-l~~L~~L~L~~c~~l~~~~~~----~~~L~~L~L~~~~i~~- 196 (583)
. +..+|+..+.++.|++|+|.. +.+.++|..+ . ..+|+.|+.+. ..+...|.. ...|+.|.+.+|.+++
T Consensus 298 e-l~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 298 E-LEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred h-hhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCccccc
Confidence 5 677888889999999999988 7788888855 1 23356665554 344444422 2356778888888873
Q ss_pred ccccccCCCCccEEeeeCCCCCcccc-ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEec
Q 036772 197 LPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLV 275 (583)
Q Consensus 197 lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~ 275 (583)
.-+.+.++++|+.|+|++|.. ..+| ..+.++..|++|+++|| .+..+|+.+.++..|++|...+|.+..
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~-------- 444 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLS-------- 444 (1081)
T ss_pred chhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceee--------
Confidence 333477888999999998754 4444 45678888999999984 677888888888888888777777654
Q ss_pred cCCCcccCccCCCCCCCCEEEccCCCCc--ccChhhhccCcccccccccccc
Q 036772 276 DCGITELPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSNLLFLTLQNCKR 325 (583)
Q Consensus 276 ~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~ 325 (583)
+| .+..++.|+.+|++.|+++ .+|..... ++|++|+++++.+
T Consensus 445 ------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 ------FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ------ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 55 5666666666666666655 23322211 5666666666653
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=2e-16 Score=175.98 Aligned_cols=245 Identities=21% Similarity=0.308 Sum_probs=186.6
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 95 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 95 (583)
.+...|+++++. ...+|.. +|++|+.|++++|.++++|..+. .+|++|++++|+++.+|..+. .+|+.
T Consensus 178 ~~~~~L~L~~~~------LtsLP~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~ 245 (754)
T PRK15370 178 NNKTELRLKILG------LTTIPAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQE 245 (754)
T ss_pred cCceEEEeCCCC------cCcCCcc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccE
Confidence 456788887763 3355654 46789999999999999998654 589999999999999987653 58999
Q ss_pred EeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCc
Q 036772 96 LNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNL 174 (583)
Q Consensus 96 L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l 174 (583)
|+|++|... .+|. +. .+|+.|++++|. +..+|..+. ++|+.|++++| .++.+|..+ .++|+.|++++|. +
T Consensus 246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-L 316 (754)
T PRK15370 246 MELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-L 316 (754)
T ss_pred EECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-c
Confidence 999999754 5663 32 589999999865 456777654 58999999985 678888654 3579999999864 5
Q ss_pred ccccc-cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772 175 KRFLE-ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253 (583)
Q Consensus 175 ~~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 253 (583)
..+|. ...+|+.|++++|.++.+|..+. ++|+.|++++|.. ..+|..+. +.|+.|++++|. +..+|+.+. .
T Consensus 317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~ 388 (754)
T PRK15370 317 TALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPENLP--A 388 (754)
T ss_pred ccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHhHH--H
Confidence 55654 44689999999999999998664 7999999999865 45776553 689999999985 446776543 2
Q ss_pred cccEEEccCCccccCccEEEeccCCCcccCccC----CCCCCCCEEEccCCCCc
Q 036772 254 SLKIMLANETAISQNLVDMSLVDCGITELPESL----GRSPSLKFLNLAENDFE 303 (583)
Q Consensus 254 ~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~ 303 (583)
. |+.|++++|++..+|..+ +.++.+..|++.+|.+.
T Consensus 389 s--------------L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 A--------------LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred H--------------HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 444555556666666543 45688999999999986
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=3.6e-17 Score=160.95 Aligned_cols=229 Identities=20% Similarity=0.183 Sum_probs=169.0
Q ss_pred cCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC--CCC
Q 036772 37 HSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP--DLS 111 (583)
Q Consensus 37 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~ 111 (583)
+.+-...+|.+-..+.++.|.+++||+. | .+++|++|||++|+|+.+- ..|+.++.|..|-+.++..++++| .|.
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 4444556788899999999999999987 4 8999999999999999874 559999999998888866788888 388
Q ss_pred CCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCc---------------
Q 036772 112 LALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNL--------------- 174 (583)
Q Consensus 112 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l--------------- 174 (583)
++..|+.|.+.-|...-.....+..+++|..|.+.+ +.++.++... .+.+++++.+..+..+
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 999999999988776666667888899998888887 5666776633 6677777666543200
Q ss_pred --------------------------------ccc---------c---------ccCCCcCEEeccCCCCcccc-ccccC
Q 036772 175 --------------------------------KRF---------L---------EISCNIENLDLSETAIEELP-SSIGN 203 (583)
Q Consensus 175 --------------------------------~~~---------~---------~~~~~L~~L~L~~~~i~~lp-~~i~~ 203 (583)
+.+ | ..+++|+.|+|++|.++.+- .++..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 011 1 12346777777777777663 35667
Q ss_pred CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccc
Q 036772 204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266 (583)
Q Consensus 204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~ 266 (583)
...++.|.|..|+.-..-...+.++..|++|++++|+.....|..+..+.+|.+|.+-.|.+.
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777777777776554444456677788888888888777777777778888888877776543
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=7.4e-15 Score=150.46 Aligned_cols=244 Identities=25% Similarity=0.228 Sum_probs=131.4
Q ss_pred CCCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCC--C----CC-CCCCCCCcCEEeeeCCCCchhhhhh
Q 036772 66 IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLS--R----IP-DLSLALNLEWLDLVGCASLIEIHSS 133 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~--~----~p-~l~~l~~L~~L~L~~~~~l~~~~~~ 133 (583)
...+|++|+++++.++ .++..+...++|+.++++++.... . ++ .+..+++|++|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 4556888888888873 455567777888888888775432 0 11 2455677778888777665444444
Q ss_pred ccCCCC---CCEEEccCCCCCC----cCCCcC-CC-CCccEEEecCCCCcc----ccc---ccCCCcCEEeccCCCCc--
Q 036772 134 IQHLNK---LVFLNLGRCISLK----SLPTGI-NL-DSLKVLYLGGCSNLK----RFL---EISCNIENLDLSETAIE-- 195 (583)
Q Consensus 134 i~~l~~---L~~L~L~~c~~l~----~lp~~~-~l-~~L~~L~L~~c~~l~----~~~---~~~~~L~~L~L~~~~i~-- 195 (583)
+..+.+ |++|++++|.... .+...+ .+ ++|++|++++|.... .++ ....+|+.|++++|.++
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 433333 7777777754221 111112 33 666777777665321 111 12235566666665554
Q ss_pred ---cccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCCccccccC-----CCCcccEEEccCC
Q 036772 196 ---ELPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEKLPEEIG-----NLESLKIMLANET 263 (583)
Q Consensus 196 ---~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~-----~l~~L~~L~l~~~ 263 (583)
.++..+..+++|+.|++++|..... ++..+..+++|++|++++|.....-...+. ..+.
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~--------- 251 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS--------- 251 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC---------
Confidence 1233334445566666665543211 223344455555555555543221111100 0122
Q ss_pred ccccCccEEEeccCCCcc-----cCccCCCCCCCCEEEccCCCCccc-----Chhhhcc-Ccccccccccc
Q 036772 264 AISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKI-----PSSIKQL-SNLLFLTLQNC 323 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~i~~l-~~L~~L~L~~c 323 (583)
|++|++++|.+++ +...+..+++|+++++++|.+..- ...+... +.|+.|++.++
T Consensus 252 -----L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 252 -----LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred -----ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 5555666665542 344555667888888888887733 2233334 57777777654
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=4.6e-16 Score=136.65 Aligned_cols=48 Identities=38% Similarity=0.641 Sum_probs=29.8
Q ss_pred cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772 282 LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 282 lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
+|..++.+++|+.|.+..|.+-++|..++.+.+|+.|++.++ +|+.+|
T Consensus 142 lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence 556666666666666666666666666666666666666665 444444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=2.5e-15 Score=132.08 Aligned_cols=126 Identities=28% Similarity=0.488 Sum_probs=68.6
Q ss_pred cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 263 (583)
++.|.+++|.++.+|+.++.+.+|+.|++.+| .++.+|.+++.++.|+.|+++- +.+..+|..++.++.|+.|+++.|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcccc
Confidence 33344445555555555555555555555553 2344555555555555555554 234455555555555555544444
Q ss_pred ccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 264 AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
.+.+ ..+|..+..++.|+.|.|+.|.|+-+|..++++++|+.|.+.++
T Consensus 113 nl~e------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 113 NLNE------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred cccc------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 4332 12555555555666666666666666666666666666666555
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=3.8e-14 Score=145.15 Aligned_cols=254 Identities=23% Similarity=0.201 Sum_probs=173.3
Q ss_pred CCcccccCCCccEEEecCCCCC-----CCCCCC-CCCCceEEEccCCChhh-------hcccccCCCCccEEeccCCCCC
Q 036772 38 SRCLESFFNELRYFQWDGYPLK-----SLPSKN-IPEHLVSLEMPHSNIEQ-------LWNGVQNLAALKRLNLSYCKQL 104 (583)
Q Consensus 38 ~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~l~~-------l~~~~~~l~~L~~L~Ls~~~~l 104 (583)
..-+..+ ..|+.|+++++.++ .++... ..+.|++|+++++.+.. ++..+..+++|+.|++++|...
T Consensus 16 ~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 16 TELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 3444455 46999999999874 344333 56779999999987662 3345778999999999999776
Q ss_pred CCCC-CCCCC---CCcCEEeeeCCCCch----hhhhhccCC-CCCCEEEccCCCCCC----cCCCcC-CCCCccEEEecC
Q 036772 105 SRIP-DLSLA---LNLEWLDLVGCASLI----EIHSSIQHL-NKLVFLNLGRCISLK----SLPTGI-NLDSLKVLYLGG 170 (583)
Q Consensus 105 ~~~p-~l~~l---~~L~~L~L~~~~~l~----~~~~~i~~l-~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~L~~ 170 (583)
...+ .+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+ .+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 5443 23333 559999999987652 344566777 999999999976432 223333 578999999999
Q ss_pred CCCc----cccccc---CCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeCCCCCcccccccc-----CCCCCcE
Q 036772 171 CSNL----KRFLEI---SCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTNCSRLKSVSNSLC-----NLKSLQY 233 (583)
Q Consensus 171 c~~l----~~~~~~---~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~ 233 (583)
|..- ..++.. .++|+.|++++|.++. ++..+..+++|++|++++|.........+. ..+.|++
T Consensus 175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~ 254 (319)
T cd00116 175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT 254 (319)
T ss_pred CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence 7643 123322 2599999999998863 455677889999999999876542222221 2479999
Q ss_pred EEccCCCCC----CccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCC-CCCCEEEccCCC
Q 036772 234 LFLSGCLKL----EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKFLNLAEND 301 (583)
Q Consensus 234 L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l-~~L~~L~Ls~n~ 301 (583)
|++++|... ..+...+..+++|+.+++++|.+.+. ....+...+... +.|++|++.++.
T Consensus 255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE---------GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH---------HHHHHHHHHhhcCCchhhcccCCCC
Confidence 999999764 23445566667888777777776531 000122333344 678888887765
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=5.9e-14 Score=138.47 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=88.1
Q ss_pred EEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCch
Q 036772 51 FQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLI 128 (583)
Q Consensus 51 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~ 128 (583)
.+-++-+++++|.. .++.-+++.|..|+|+.+|.+ |+.+++||.||||+|.+....|+ |.++++|..|-+.++..+.
T Consensus 51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 33445557777764 355688999999999999876 89999999999999987777774 8888888888888867777
Q ss_pred hhhh-hccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecC
Q 036772 129 EIHS-SIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGG 170 (583)
Q Consensus 129 ~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~ 170 (583)
.+|. .++.|..|+.|.+.- ..+..++... .+++|..|.+.+
T Consensus 130 ~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred hhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccc
Confidence 7774 678888888887765 3444444433 567777776666
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.17 E-value=1.8e-11 Score=138.74 Aligned_cols=247 Identities=25% Similarity=0.325 Sum_probs=157.1
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCC--hhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN--IEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL 121 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 121 (583)
...|...+-++.+..++.....++|++|-+..|. +..++.. |..++.|++|||++|..+..+|+ ++.+-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4789999999999999988877799999999986 6666544 88999999999999999999995 888999999999
Q ss_pred eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCC-Cc-cccc---ccCCCcCEEeccCCCCc
Q 036772 122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCS-NL-KRFL---EISCNIENLDLSETAIE 195 (583)
Q Consensus 122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~-~l-~~~~---~~~~~L~~L~L~~~~i~ 195 (583)
++ +.+..+|.++++|++|.+||+..+..+..+|... .+.+|++|.+..-. .. .... ..+.+|+.+.......
T Consensus 603 ~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 603 SD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred cC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 99 4577999999999999999999988887776655 59999999987643 00 1111 1222333333322222
Q ss_pred cccccccCCCCcc----EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccE
Q 036772 196 ELPSSIGNLSRLV----RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVD 271 (583)
Q Consensus 196 ~lp~~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~ 271 (583)
.+-..+..+.+|. .+.+.+ ......+..+..+.+|+.|.+.+|...+...........+. ....+..
T Consensus 681 ~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--------~f~~l~~ 751 (889)
T KOG4658|consen 681 LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--------CFPNLSK 751 (889)
T ss_pred HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhh--------hHHHHHH
Confidence 1111122223332 222222 22234555666777778888777766543222111111000 0001222
Q ss_pred EEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772 272 MSLVDCGITELPESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 272 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 303 (583)
+.+.+|.....+.+.-..++|+.|.+..+...
T Consensus 752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL 783 (889)
T ss_pred HHhhccccccccchhhccCcccEEEEeccccc
Confidence 33333433334444555677777777777643
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=6.9e-10 Score=126.11 Aligned_cols=259 Identities=25% Similarity=0.311 Sum_probs=151.2
Q ss_pred CCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCC-CCCCCC--CCCCCCcCEEeeeCCCCchhhhh
Q 036772 56 YPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQ-LSRIPD--LSLALNLEWLDLVGCASLIEIHS 132 (583)
Q Consensus 56 ~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~ 132 (583)
......|........+...+.++.+..++... ..++|++|-+..+.. +..++. |..++.|++|||++|..+.++|.
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 44555666666677888888888887775543 344788888888763 444443 77788888888888888888888
Q ss_pred hccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEe
Q 036772 133 SIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLD 211 (583)
Q Consensus 133 ~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~ 211 (583)
+|+.|-+|++|++++ +.++.+|.++ +++.|.+|++..+..+..+ |.....+++|++|.
T Consensus 590 ~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--------------------~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI--------------------PGILLELQSLRVLR 648 (889)
T ss_pred HHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccc--------------------cchhhhcccccEEE
Confidence 888888888888877 6677777777 6777777777664433221 22344467777777
Q ss_pred eeCCCC--CccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCC
Q 036772 212 LTNCSR--LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS 289 (583)
Q Consensus 212 L~~~~~--l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l 289 (583)
+..-.. ....-..+.++.+|+.|.+..++. .+-+.+..+..|..+ .+.+.+.+|.....+..++.+
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~----------~~~l~~~~~~~~~~~~~~~~l 716 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL----------LQSLSIEGCSKRTLISSLGSL 716 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH----------hHhhhhcccccceeecccccc
Confidence 654321 111222334445555554433222 111111122222111 222233334444466677788
Q ss_pred CCCCEEEccCCCCcccCh-h-----hhc-cCcccccccccccccccCC--CCCCCC-eeeeeCCcCccc
Q 036772 290 PSLKFLNLAENDFEKIPS-S-----IKQ-LSNLLFLTLQNCKRLQSLP--ELPCGS-NIFARYCTSLET 348 (583)
Q Consensus 290 ~~L~~L~Ls~n~l~~lp~-~-----i~~-l~~L~~L~L~~c~~L~~lp--~lp~~~-~l~~~~c~sL~~ 348 (583)
.+|+.|.+.++.+.++.. + ... ++++..+.+.+|..++.+. .+++++ .+....|..++.
T Consensus 717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 888888888887653321 1 111 4456666666666655544 345555 555555554443
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.2e-10 Score=116.87 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCCCceEEEccCCChhhh---cccccCCCCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCch-hhhhhccCCCC
Q 036772 66 IPEHLVSLEMPHSNIEQL---WNGVQNLAALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLI-EIHSSIQHLNK 139 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~ 139 (583)
.+++++.|||++|-+... -.-...+|+|+.|+|+.|+...-... -..++.|+.|.|+.|...- .+...+..+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 344455555554433321 12234555555555555543332221 1234455555555554332 22333345555
Q ss_pred CCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccc----ccccCCCcCEEeccCCCCccc--ccc-----ccCCCCc
Q 036772 140 LVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKR----FLEISCNIENLDLSETAIEEL--PSS-----IGNLSRL 207 (583)
Q Consensus 140 L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~----~~~~~~~L~~L~L~~~~i~~l--p~~-----i~~l~~L 207 (583)
|+.|+|.+|..+..-.... -+..|++|+|+++..+.. .-..++.|+.|+++.+++.++ |+. ...+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 5555555543222211111 345555666655433321 112234555555666666543 332 2456677
Q ss_pred cEEeeeCCCCCcc-ccccccCCCCCcEEEccCC
Q 036772 208 VRLDLTNCSRLKS-VSNSLCNLKSLQYLFLSGC 239 (583)
Q Consensus 208 ~~L~L~~~~~l~~-lp~~l~~l~~L~~L~l~~c 239 (583)
++|++..|+.... --..+..+++|+.|.+.++
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhcccc
Confidence 7777776655211 1123444555565555443
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=7.6e-11 Score=121.74 Aligned_cols=212 Identities=28% Similarity=0.387 Sum_probs=133.7
Q ss_pred EEccCCChhhhcccc--cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC
Q 036772 73 LEMPHSNIEQLWNGV--QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS 150 (583)
Q Consensus 73 L~L~~~~l~~l~~~~--~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~ 150 (583)
|.|++-+++.+|.+- ..+.--...||+.|+......++..+..|+.+.|..|. +..+|..+.++..|.+|||+. +.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-ch
Confidence 444444555544332 12223334555555432222234444455555555432 345566666666666666665 45
Q ss_pred CCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772 151 LKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS 230 (583)
Q Consensus 151 l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 230 (583)
+..+|..+..--|+. |-+++|+++.+|..++.+..|..|+.+.|. +..+|..++.+.+
T Consensus 133 lS~lp~~lC~lpLkv---------------------li~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~s 190 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKV---------------------LIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTS 190 (722)
T ss_pred hhcCChhhhcCccee---------------------EEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHH
Confidence 556665553223444 444456777788888877888888888764 4557777888888
Q ss_pred CcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhh-
Q 036772 231 LQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI- 309 (583)
Q Consensus 231 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i- 309 (583)
|+.|.+..| .+..+|+.+..++ |.+||++.|++..+|-.+.++..|++|.|.+|.+++-|..|
T Consensus 191 lr~l~vrRn-~l~~lp~El~~Lp---------------Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 191 LRDLNVRRN-HLEDLPEELCSLP---------------LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred HHHHHHhhh-hhhhCCHHHhCCc---------------eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence 888888774 4556777666543 66667777777779999999999999999999999888765
Q ss_pred --hccCccccccccccc
Q 036772 310 --KQLSNLLFLTLQNCK 324 (583)
Q Consensus 310 --~~l~~L~~L~L~~c~ 324 (583)
+...--++|++.-|.
T Consensus 255 ~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hccceeeeeeecchhcc
Confidence 334445677777773
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2.6e-09 Score=112.90 Aligned_cols=173 Identities=39% Similarity=0.470 Sum_probs=77.5
Q ss_pred CCcCEEeeeCCCCchhhhhhccCCC-CCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccc---cCCCcCEEe
Q 036772 114 LNLEWLDLVGCASLIEIHSSIQHLN-KLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLD 188 (583)
Q Consensus 114 ~~L~~L~L~~~~~l~~~~~~i~~l~-~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~ 188 (583)
+.++.|++.++ ....++...+.+. +|+.|++++ +.+..+|..+ .++.|+.|++++| .+..++. ...+|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 44444444442 2333333333332 444444444 3344443222 4444444444442 2222222 334444555
Q ss_pred ccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC
Q 036772 189 LSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN 268 (583)
Q Consensus 189 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~ 268 (583)
+++|.+..+|..+.....|++|.+++|.. ...+..+.++..+..|.+..+ .+..++..++.++++++|++++|.+.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~-- 268 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS-- 268 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCc-eeeeccchhccccccceecccccccc--
Confidence 55556666665554555566666665531 223334444455554443332 22222344444444444444443333
Q ss_pred ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772 269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306 (583)
Q Consensus 269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 306 (583)
+++. ++.+.+|+.|+++++.+..++
T Consensus 269 ------------~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 ------------SISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ------------cccc-ccccCccCEEeccCccccccc
Confidence 2433 555666666666666655443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=7.3e-10 Score=106.14 Aligned_cols=55 Identities=29% Similarity=0.346 Sum_probs=26.3
Q ss_pred CceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772 69 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC 124 (583)
Q Consensus 69 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~ 124 (583)
.|++|||++|.|+.+.++++-+|+++.|++|+|.+. .+..+..+++|+.|+|++|
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc
Confidence 345555555555555555555555555555555322 2222444444444444443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.82 E-value=3.8e-09 Score=111.71 Aligned_cols=196 Identities=32% Similarity=0.325 Sum_probs=116.6
Q ss_pred EEEecCCCC-CCCCCCCCCCCceEEEccCCChhhhcccccCCC-CccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCc
Q 036772 50 YFQWDGYPL-KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLA-ALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127 (583)
Q Consensus 50 ~L~l~~~~l-~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l 127 (583)
.+....+.+ ..+......+.+..|++.++.+..++.....+. +|+.|++++|+.......+..+++|+.|++++|. +
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence 355555554 222222344556666666666666665555553 6666666666433322345666666666666643 4
Q ss_pred hhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccc--cccCCCcCEEeccCCCCccccccccCC
Q 036772 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRF--LEISCNIENLDLSETAIEELPSSIGNL 204 (583)
Q Consensus 128 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~--~~~~~~L~~L~L~~~~i~~lp~~i~~l 204 (583)
..++...+.++.|+.|++++ +.+..+|..+ ....|++|.++++..+... .....++..+.+.++.+..++..++.+
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l 254 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence 44555444666666666666 5566666654 3444667766665322211 122334555666777777777778888
Q ss_pred CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc
Q 036772 205 SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI 249 (583)
Q Consensus 205 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l 249 (583)
+.++.|++++|... .++. ++.+.+|+.|+++++......|...
T Consensus 255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence 88888888886554 3343 7788888888888877666555543
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.81 E-value=1.4e-09 Score=104.18 Aligned_cols=126 Identities=27% Similarity=0.256 Sum_probs=93.5
Q ss_pred CCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772 181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA 260 (583)
Q Consensus 181 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 260 (583)
+..|++++|++|.|+.+..++.-.+.++.|++++|..... ..+..+++|+.||+++|.. ..+...-..+.+.++|.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchh-HhhhhhHhhhcCEeeeeh
Confidence 4568889999999999999999999999999999876543 2377889999999998643 222222234556667777
Q ss_pred cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC--hhhhccCccccccccccc
Q 036772 261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP--SSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~ 324 (583)
++|.+.+ ...++.+-+|..||+++|+|+.+- ..|++||.|+.+.+.+++
T Consensus 360 a~N~iE~---------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIET---------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHhh---------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7766543 234667778888888888887553 468888888888888874
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5.4e-09 Score=105.20 Aligned_cols=152 Identities=22% Similarity=0.206 Sum_probs=109.0
Q ss_pred CCCCceEEEccCCChhhhcc--cccCCCCccEEeccCCCCCCCCC--C-CCCCCCcCEEeeeCCCCchhhhhh-ccCCCC
Q 036772 66 IPEHLVSLEMPHSNIEQLWN--GVQNLAALKRLNLSYCKQLSRIP--D-LSLALNLEWLDLVGCASLIEIHSS-IQHLNK 139 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p--~-l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~ 139 (583)
+.++|++..|.+..+...+. ..+.|++++.|||+.|-+..--+ . ...+|+|+.|+|+.|....-..+. -..+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 67889999999988887663 57899999999999984433222 1 467899999999998654332221 236889
Q ss_pred CCEEEccCCCCCC-cCCCcC-CCCCccEEEecCCCCcc--cc-cccCCCcCEEeccCCCCcccc--ccccCCCCccEEee
Q 036772 140 LVFLNLGRCISLK-SLPTGI-NLDSLKVLYLGGCSNLK--RF-LEISCNIENLDLSETAIEELP--SSIGNLSRLVRLDL 212 (583)
Q Consensus 140 L~~L~L~~c~~l~-~lp~~~-~l~~L~~L~L~~c~~l~--~~-~~~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L 212 (583)
|+.|.|+.|..-. ++-... .+|+|+.|++.+|..+. .. ...+..|++|+|++|.+..++ ..++.+++|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 9999999985432 111111 68999999999985332 11 234567888888888887766 45778888888888
Q ss_pred eCCCC
Q 036772 213 TNCSR 217 (583)
Q Consensus 213 ~~~~~ 217 (583)
+.|..
T Consensus 279 s~tgi 283 (505)
T KOG3207|consen 279 SSTGI 283 (505)
T ss_pred cccCc
Confidence 77654
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=1e-08 Score=94.19 Aligned_cols=109 Identities=25% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCceEEEccCCChhhhccccc-CCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhc-c
Q 036772 58 LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQ-NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSI-Q 135 (583)
Q Consensus 58 l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i-~ 135 (583)
++..|...++.++++|+|++|.|+.+ +.+. .+.+|+.|+|++|. ++.++.+..+++|++|++++|... .+.+.+ .
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHH
Confidence 33444444555566666666666655 2333 45666666666663 444555666666666666665432 332223 3
Q ss_pred CCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecC
Q 036772 136 HLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGG 170 (583)
Q Consensus 136 ~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~ 170 (583)
.+++|+.|++++ +.+.++..-. .+++|+.|++.+
T Consensus 86 ~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 86 NLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp H-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT
T ss_pred hCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccC
Confidence 466677777765 3444432211 344555555444
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=3.4e-09 Score=103.90 Aligned_cols=242 Identities=18% Similarity=0.168 Sum_probs=117.3
Q ss_pred CCCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCC----CCC--------CCCCCCCcCEEeeeCCCCch
Q 036772 66 IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLS----RIP--------DLSLALNLEWLDLVGCASLI 128 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~----~~p--------~l~~l~~L~~L~L~~~~~l~ 128 (583)
....++.+++++|.+. .+-..+.+.++|+..++++- .+. ++| .+..++.|++|+|++|-...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3456677777777654 23344566667777777653 111 122 12344455555555554322
Q ss_pred hhh----hhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc-----c
Q 036772 129 EIH----SSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP-----S 199 (583)
Q Consensus 129 ~~~----~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-----~ 199 (583)
.-+ .-+.++..|++|.|.+|. ++......--..|..|. ..+-......|+.+...+|++..-+ .
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELA------VNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 211 223445555555555542 11110000000000000 0001112234555555555554332 2
Q ss_pred cccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccE
Q 036772 200 SIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVD 271 (583)
Q Consensus 200 ~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~ 271 (583)
.+...+.|+.+.+..|.+... +...+..+++|+.||+.+|.... .+...++.+++|+.|+++.|.+...
T Consensus 180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~--- 256 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE--- 256 (382)
T ss_pred HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc---
Confidence 344556666666666544322 23345556666666666654432 2333444455554444444333210
Q ss_pred EEeccCCCcccCccC-CCCCCCCEEEccCCCCc-----ccChhhhccCccccccccccc
Q 036772 272 MSLVDCGITELPESL-GRSPSLKFLNLAENDFE-----KIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 272 L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 324 (583)
+-..+.+.+ ...|+|+.|.+.+|.++ .+..++...+.|+.|+|++|+
T Consensus 257 ------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 257 ------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 000022222 34688999999999876 334456678889999999884
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.67 E-value=4.8e-10 Score=115.97 Aligned_cols=189 Identities=25% Similarity=0.326 Sum_probs=150.9
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772 47 ELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~ 125 (583)
.-...+++.|.+..+|..+ .+..|+.+.+..|.+..+|+.+.++..|.+|||+.|+.....+.+..+ -|+.|.+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN- 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN- 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC-
Confidence 4567888999999999877 667788899999999999999999999999999999644433345544 4899999985
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCC--cCEEeccCCCCcccccccc
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCN--IENLDLSETAIEELPSSIG 202 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~--L~~L~L~~~~i~~lp~~i~ 202 (583)
.++.+|..++.+.+|..||.+. +.+..+|..+ .+.+|+.|++.. +.+..+|+.+.. |..||++.|++..+|-.|.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchhhh
Confidence 4778899999999999999987 5677788777 899999999988 456677776664 5679999999999999999
Q ss_pred CCCCccEEeeeCCCCCccccccccC---CCCCcEEEccCCC
Q 036772 203 NLSRLVRLDLTNCSRLKSVSNSLCN---LKSLQYLFLSGCL 240 (583)
Q Consensus 203 ~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~l~~c~ 240 (583)
+|+.|++|-|.+|.. .+-|..++- ..--++|++..|.
T Consensus 232 ~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhcc
Confidence 999999999998764 555555442 3334777777773
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=1.8e-08 Score=92.53 Aligned_cols=123 Identities=21% Similarity=0.204 Sum_probs=35.3
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccc-cCCCCcc
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALK 94 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~ 94 (583)
.++|.|++.+|.+ .. .+.+.....+|+.|++++|.++.++....+++|++|++++|.++.+.+++ ..+++|+
T Consensus 19 ~~~~~L~L~~n~I------~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 19 VKLRELNLRGNQI------ST-IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccc------cc-ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3456666666532 11 12333211466666666666666655445666666666666666664443 3466666
Q ss_pred EEeccCCCCCC--CCCCCCCCCCcCEEeeeCCCCchh---hhhhccCCCCCCEEEc
Q 036772 95 RLNLSYCKQLS--RIPDLSLALNLEWLDLVGCASLIE---IHSSIQHLNKLVFLNL 145 (583)
Q Consensus 95 ~L~Ls~~~~l~--~~p~l~~l~~L~~L~L~~~~~l~~---~~~~i~~l~~L~~L~L 145 (583)
.|+|++|++.. ++..++.+++|+.|+|.+|+.... -...+..+++|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66666664322 122345556666666666543221 1123344555555554
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=4.7e-09 Score=102.95 Aligned_cols=248 Identities=21% Similarity=0.219 Sum_probs=139.7
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCC----CCCCCCCCCCCceEEEccCCChhhhcccccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPL----KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l----~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~ 89 (583)
.|..+..|++++|.+ +.+..-.+...+...+ +||..+|++.-. ..+|. .+..+...+..
T Consensus 28 ~~~s~~~l~lsgnt~-G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e---------------~L~~l~~aL~~ 90 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTF-GTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPE---------------ALKMLSKALLG 90 (382)
T ss_pred ccCceEEEeccCCch-hHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHH---------------HHHHHHHHHhc
Confidence 555666666666643 1111222334444442 566666654321 11111 12233445677
Q ss_pred CCCccEEeccCCCCCCCCC-C----CCCCCCcCEEeeeCCCCchhhhhh-------------ccCCCCCCEEEccCCCCC
Q 036772 90 LAALKRLNLSYCKQLSRIP-D----LSLALNLEWLDLVGCASLIEIHSS-------------IQHLNKLVFLNLGRCISL 151 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p-~----l~~l~~L~~L~L~~~~~l~~~~~~-------------i~~l~~L~~L~L~~c~~l 151 (583)
+++|++||||+|.+-...+ . ++++..|++|.|.+|.....-... ++.-++|+.+...+ +++
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccc
Confidence 8899999999987665543 1 567889999999998654332222 23344555555444 333
Q ss_pred CcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc-----cccccccCCCCccEEeeeCCCCCcc----cc
Q 036772 152 KSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE-----ELPSSIGNLSRLVRLDLTNCSRLKS----VS 222 (583)
Q Consensus 152 ~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp 222 (583)
.+-+... +.......+.|+.+.+..|.|. -+...+.++++|++|+|.+|..... +.
T Consensus 170 en~ga~~---------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 170 ENGGATA---------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred ccccHHH---------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3332211 0111122244555555555554 2445678899999999999876543 45
Q ss_pred ccccCCCCCcEEEccCCCCCCcc----cccc-CCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEc
Q 036772 223 NSLCNLKSLQYLFLSGCLKLEKL----PEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNL 297 (583)
Q Consensus 223 ~~l~~l~~L~~L~l~~c~~l~~l----p~~l-~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 297 (583)
..++.+++|+.|++++|..-..- -+.+ ...++|+.|.+.+|.|... ....+-..+...+.|+.|+|
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnL 305 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNL 305 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcC
Confidence 56777889999999998754321 1111 2346666666666655421 00003334556889999999
Q ss_pred cCCCCc
Q 036772 298 AENDFE 303 (583)
Q Consensus 298 s~n~l~ 303 (583)
++|.+.
T Consensus 306 ngN~l~ 311 (382)
T KOG1909|consen 306 NGNRLG 311 (382)
T ss_pred Cccccc
Confidence 999883
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.3e-09 Score=102.76 Aligned_cols=157 Identities=25% Similarity=0.296 Sum_probs=104.5
Q ss_pred CceEEEccCCChh--hhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhh--hhccCCCCCCEE
Q 036772 69 HLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIH--SSIQHLNKLVFL 143 (583)
Q Consensus 69 ~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L 143 (583)
.|++|||++..++ .+-.-++.+.+|+.|.|.+++.-..+. .+.+-.+|+.|+|+.|...++.. -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4888888888776 343446778888888888876555444 46777788888888887776543 345678888888
Q ss_pred EccCCCCCCcCCCcC---CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcc
Q 036772 144 NLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKS 220 (583)
Q Consensus 144 ~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~ 220 (583)
+|+.|-..+..-..+ --+.|..|+++||..-- ....+..-...+++|..|||++|..+..
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence 888876554432222 24567777777764211 0112222246788999999998877654
Q ss_pred -ccccccCCCCCcEEEccCCCCC
Q 036772 221 -VSNSLCNLKSLQYLFLSGCLKL 242 (583)
Q Consensus 221 -lp~~l~~l~~L~~L~l~~c~~l 242 (583)
....+.+++.|++|.++.|..+
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCC
Confidence 3445677888888888888643
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.41 E-value=5.9e-07 Score=100.07 Aligned_cols=111 Identities=25% Similarity=0.410 Sum_probs=77.6
Q ss_pred ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccC
Q 036772 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESL 286 (583)
Q Consensus 207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l 286 (583)
++.|+|++|.....+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.+.. .+|..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-------------~iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-------------SIPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-------------CCchHH
Confidence 6667777777666677777777777777777777667777777777776666666655443 267778
Q ss_pred CCCCCCCEEEccCCCCc-ccChhhhcc-CcccccccccccccccCC
Q 036772 287 GRSPSLKFLNLAENDFE-KIPSSIKQL-SNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 287 ~~l~~L~~L~Ls~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~lp 330 (583)
+.+++|+.|+|++|.++ .+|..++.+ .++..+++.+|+.+-..|
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 88888888888888877 777776553 355667777765544443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.4e-06 Score=97.03 Aligned_cols=102 Identities=24% Similarity=0.224 Sum_probs=65.4
Q ss_pred ceEEEccCCChh-hhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccC
Q 036772 70 LVSLEMPHSNIE-QLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 70 L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~ 147 (583)
++.|+|+++.+. .+|..+..+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 666777777666 456666677777777777776665666 466677777777777666666676777777777777776
Q ss_pred CCCCCcCCCcC--CCCCccEEEecCC
Q 036772 148 CISLKSLPTGI--NLDSLKVLYLGGC 171 (583)
Q Consensus 148 c~~l~~lp~~~--~l~~L~~L~L~~c 171 (583)
|.....+|..+ ...++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 65555666554 1234445555554
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=2e-08 Score=100.75 Aligned_cols=227 Identities=23% Similarity=0.321 Sum_probs=122.4
Q ss_pred CCccEEeccCCCCCCCCC---CCCCCCCcCEEeeeCCCCchhhh-hh-ccCCCCCCEEEccCCCCCCcCCCc-C--CCCC
Q 036772 91 AALKRLNLSYCKQLSRIP---DLSLALNLEWLDLVGCASLIEIH-SS-IQHLNKLVFLNLGRCISLKSLPTG-I--NLDS 162 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~~~~l~~~~-~~-i~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~ 162 (583)
..||.|.+.+|+....-+ ....+||++.|++.+|..+++.. .+ -..+.+|++|++..|..+++..-. + .+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 356777777776555444 24566777777777777555322 22 246777777777777776654322 2 5777
Q ss_pred ccEEEecCCCCccc-----ccccCCCcCEEeccCCCCc---cccccccCCCCccEEeeeCCCCCcccc--ccccCCCCCc
Q 036772 163 LKVLYLGGCSNLKR-----FLEISCNIENLDLSETAIE---ELPSSIGNLSRLVRLDLTNCSRLKSVS--NSLCNLKSLQ 232 (583)
Q Consensus 163 L~~L~L~~c~~l~~-----~~~~~~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~ 232 (583)
|++|+++.|..+.. +......++.+.+.++.-. .+-..-+.+.-+..+++.+|..+++.. ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777777765543 2222233444444432111 111222345556666777776555432 2233466778
Q ss_pred EEEccCCCCCCccc--cccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc---ccCh
Q 036772 233 YLFLSGCLKLEKLP--EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE---KIPS 307 (583)
Q Consensus 233 ~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~ 307 (583)
.|+.++|..+...+ .--.+..+|+.|.+++++... +.. +-..-.+++.|+.|++.++... ++-.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs--------d~~---ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS--------DRG---FTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh--------hhh---hhhhhcCChhhhhhcccccceehhhhHhh
Confidence 88888877654332 122345666666666554211 111 1111234566666766666532 2322
Q ss_pred hhhccCccccccccccccccc
Q 036772 308 SIKQLSNLLFLTLQNCKRLQS 328 (583)
Q Consensus 308 ~i~~l~~L~~L~L~~c~~L~~ 328 (583)
.-.+++.|+.|.+++|..++.
T Consensus 367 ls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred hccCCchhccCChhhhhhhhh
Confidence 234566777777776654443
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=2.7e-06 Score=87.67 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=44.9
Q ss_pred hccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC-CCcCEEeccCC-CCccccc
Q 036772 133 SIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS-CNIENLDLSET-AIEELPS 199 (583)
Q Consensus 133 ~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~-~~L~~L~L~~~-~i~~lp~ 199 (583)
-+..+.+++.|++++| .++.+|. -..+|++|.+++|..+..+|..+ .+|+.|+++++ .+..+|.
T Consensus 47 r~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence 3556789999999987 7888883 24569999999998887777533 35666666655 4444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.26 E-value=1.4e-07 Score=100.29 Aligned_cols=102 Identities=27% Similarity=0.324 Sum_probs=44.8
Q ss_pred CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
.+++|..|++.+|.++++...+..+++|++|++++| .+..+..+..++.|+.|++.+|.... ...+..++.|+.+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDL 169 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchh--ccCCccchhhhcccC
Confidence 344455555555555544333444555555555554 23333344444445555555543221 122333445555555
Q ss_pred cCCCCCCcCCC--cCCCCCccEEEecCC
Q 036772 146 GRCISLKSLPT--GINLDSLKVLYLGGC 171 (583)
Q Consensus 146 ~~c~~l~~lp~--~~~l~~L~~L~L~~c 171 (583)
++ +.+..+.. .-.+.+|+.+.+.++
T Consensus 170 ~~-n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 SY-NRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred Cc-chhhhhhhhhhhhccchHHHhccCC
Confidence 44 23333333 124444555555443
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.23 E-value=6.9e-08 Score=96.93 Aligned_cols=248 Identities=22% Similarity=0.295 Sum_probs=146.8
Q ss_pred CCceEEEccCCC---hhhhcccccCCCCccEEeccCCCCCCCCC--CC-CCCCCcCEEeeeCCCCchhhh-h-hccCCCC
Q 036772 68 EHLVSLEMPHSN---IEQLWNGVQNLAALKRLNLSYCKQLSRIP--DL-SLALNLEWLDLVGCASLIEIH-S-SIQHLNK 139 (583)
Q Consensus 68 ~~L~~L~L~~~~---l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~l~~L~~L~L~~~~~l~~~~-~-~i~~l~~ 139 (583)
-.|++|.+++.. ...+-....+++++++|++.+|..+++.. .+ ..+++|++|++..|..++... . -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 346777777653 23343446789999999999998777644 23 357899999999998877543 2 3467999
Q ss_pred CCEEEccCCCCCCcCCCc--C-CCCCccEEEecCCCCccc--c---cccCCCcCEEeccCC-CCcccc--ccccCCCCcc
Q 036772 140 LVFLNLGRCISLKSLPTG--I-NLDSLKVLYLGGCSNLKR--F---LEISCNIENLDLSET-AIEELP--SSIGNLSRLV 208 (583)
Q Consensus 140 L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~--~---~~~~~~L~~L~L~~~-~i~~lp--~~i~~l~~L~ 208 (583)
|++|+++.|..++.-... . +++.++.+.+.||..++. + ......+..+++..+ .++... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999999888762111 1 577788888888876532 1 111123444554443 222211 1123567889
Q ss_pred EEeeeCCCCCcccc--ccccCCCCCcEEEccCCCCCCccc--cccCCCCcccEEEccCCccccCccEEEeccCCCcccCc
Q 036772 209 RLDLTNCSRLKSVS--NSLCNLKSLQYLFLSGCLKLEKLP--EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE 284 (583)
Q Consensus 209 ~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~ 284 (583)
.|..++|......+ .-..+..+|+.|-+.+|..+...- ..-.+.+.|+.+++.+...... .++-.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-----------~tL~s 366 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD-----------GTLAS 366 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-----------hhHhh
Confidence 99999888765432 223456889999999988654321 1123455666555555432210 00222
Q ss_pred cCCCCCCCCEEEccCCC-Ccc-----cChhhhccCccccccccccccc
Q 036772 285 SLGRSPSLKFLNLAEND-FEK-----IPSSIKQLSNLLFLTLQNCKRL 326 (583)
Q Consensus 285 ~l~~l~~L~~L~Ls~n~-l~~-----lp~~i~~l~~L~~L~L~~c~~L 326 (583)
.-.+++.|+.|.+++|. ++. +..+-..+..|+.+.+++|+.+
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 23456666666666654 221 1222234455666666666544
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.3e-07 Score=100.47 Aligned_cols=212 Identities=26% Similarity=0.236 Sum_probs=107.8
Q ss_pred CCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 123 (583)
..++.+++..+........ ..+..+..+.++.|.+...-..+..+.+|..|++.+|. +..+.. +..+++|++|++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF 127 (414)
T ss_pred chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccc
Confidence 3444444444433322222 24555666667777776644446677777777777774 334444 66777777777777
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCcccccc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEELPSS 200 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~~ 200 (583)
|..... ..+..+..|+.|++.+ +.+..+...-.++.|+.+++++|.....-+ ....+++.+.+.+|.+..+..
T Consensus 128 N~I~~i--~~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~- 203 (414)
T KOG0531|consen 128 NKITKL--EGLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG- 203 (414)
T ss_pred cccccc--cchhhccchhhheecc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-
Confidence 654332 2345555677777776 455555443346666777776654333223 444556666666666554432
Q ss_pred ccCCCCccEEeeeCCCCCccccccccCCC--CCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772 201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLK--SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI 265 (583)
Q Consensus 201 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i 265 (583)
+..+..+..+++..+.....-+ +..+. .|+.++++++... ..+..+..+..+..|++..+.+
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccc
Confidence 2233333333444433322111 11111 2555555554322 2223344444555555444443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=4.7e-06 Score=85.87 Aligned_cols=73 Identities=21% Similarity=0.436 Sum_probs=44.0
Q ss_pred ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccC-CChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPH-SNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL 119 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~-~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 119 (583)
+..+ ++++.|++++|.++++|. .+++|++|.+++ +.++.+|..+ .++|+.|++++|..+..+| .+|+.|
T Consensus 48 ~~~~-~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L 117 (426)
T PRK15386 48 IEEA-RASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL 117 (426)
T ss_pred HHHh-cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence 3344 577888888888888772 455677777765 4455555433 2466677776665444443 245555
Q ss_pred eeeC
Q 036772 120 DLVG 123 (583)
Q Consensus 120 ~L~~ 123 (583)
++.+
T Consensus 118 ~L~~ 121 (426)
T PRK15386 118 EIKG 121 (426)
T ss_pred EeCC
Confidence 5554
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.8e-06 Score=64.95 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=32.3
Q ss_pred CccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCC
Q 036772 47 ELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCK 102 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~ 102 (583)
+|++|++++|.++.+|.. | .+++|++|++++|.++.++.+ +..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666666543 2 455666666666666655532 5566666666666553
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.2e-07 Score=91.13 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=98.8
Q ss_pred CcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc--ccccCCCCcccEE
Q 036772 183 NIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL--PEEIGNLESLKIM 258 (583)
Q Consensus 183 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L 258 (583)
.+++|||++..|+ .+...+..+.+|+.|.+.++.....+-..+++-..|+.|++++|+.+... .-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777777666 33334566777888888777666666666777777888888887766432 2245667777777
Q ss_pred EccCCccc------------cCccEEEeccCCC----cccCccCCCCCCCCEEEccCCC-Cc-ccChhhhccCccccccc
Q 036772 259 LANETAIS------------QNLVDMSLVDCGI----TELPESLGRSPSLKFLNLAEND-FE-KIPSSIKQLSNLLFLTL 320 (583)
Q Consensus 259 ~l~~~~i~------------~~L~~L~L~~~~l----~~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L 320 (583)
+++-+.+. +.|..|+|++|.- ..+..-...+++|.+|||+.|. ++ +.-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77765543 3388888888842 2244445688999999999886 44 34445678899999999
Q ss_pred ccccc
Q 036772 321 QNCKR 325 (583)
Q Consensus 321 ~~c~~ 325 (583)
+.|-.
T Consensus 346 sRCY~ 350 (419)
T KOG2120|consen 346 SRCYD 350 (419)
T ss_pred hhhcC
Confidence 99954
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.04 E-value=5.4e-06 Score=62.32 Aligned_cols=58 Identities=40% Similarity=0.556 Sum_probs=40.8
Q ss_pred CcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 183 NIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
+|+.|++++|.++.+|. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46666777777777774 46777888888888776655555667777777777777764
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=1.5e-07 Score=100.30 Aligned_cols=55 Identities=24% Similarity=0.169 Sum_probs=35.1
Q ss_pred CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCC
Q 036772 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC 239 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c 239 (583)
.|...+.+.|.+..+..++.-++.|+.|+|++|+....- .+..++.|++|||+.|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc
Confidence 344455566666666666667777777777776654322 4566777777777764
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=1e-05 Score=78.14 Aligned_cols=222 Identities=21% Similarity=0.157 Sum_probs=124.5
Q ss_pred CccEEEecCCCCCCCCCC--C--CCCCceEEEccCCChhhhc---ccccCCCCccEEeccCCCCCCCCCCC-CCCCCcCE
Q 036772 47 ELRYFQWDGYPLKSLPSK--N--IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYCKQLSRIPDL-SLALNLEW 118 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~--~--~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~ 118 (583)
-+..|.+.++.+.+.... + ..+.+++|||.+|.+.... .-+.++|.|++|+|+.|+....+..+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344666666666555432 2 5788999999999887532 33689999999999999877666555 35679999
Q ss_pred EeeeCCCCc-hhhhhhccCCCCCCEEEccCCCCCCcCCCc---C--CCCCccEEEecCCCCcc-----cccccCCCcCEE
Q 036772 119 LDLVGCASL-IEIHSSIQHLNKLVFLNLGRCISLKSLPTG---I--NLDSLKVLYLGGCSNLK-----RFLEISCNIENL 187 (583)
Q Consensus 119 L~L~~~~~l-~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~---~--~l~~L~~L~L~~c~~l~-----~~~~~~~~L~~L 187 (583)
|-|.|.... ..+...+..+++++.|.++.+ .++.+-.. + --+.+++|...+|.... .+...++++..+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 999884322 234566778888888888774 22222111 1 13355666666654221 222233444444
Q ss_pred eccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC-ccccccCCCCcccEEEccCCccc
Q 036772 188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANETAIS 266 (583)
Q Consensus 188 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~ 266 (583)
.+..+.++.... -.....++.+-.|+++.++.-. .--+.+..++.|..|.++++.+.
T Consensus 205 ~v~e~PlK~~s~----------------------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 205 FVCEGPLKTESS----------------------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eeecCcccchhh----------------------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 444444433221 1112223333344444332111 11234556666666666666666
Q ss_pred cCccEEEeccCCCcccCccCCCCCCCCEEEcc
Q 036772 267 QNLVDMSLVDCGITELPESLGRSPSLKFLNLA 298 (583)
Q Consensus 267 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls 298 (583)
+.|+. .- ..--.++++++++.|+=+
T Consensus 263 d~l~~------~e-rr~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 263 DPLRG------GE-RRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccccC------Cc-ceEEEEeeccceEEecCc
Confidence 54321 00 011235778888888654
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.67 E-value=2.4e-05 Score=54.27 Aligned_cols=38 Identities=37% Similarity=0.598 Sum_probs=21.0
Q ss_pred ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772 269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306 (583)
Q Consensus 269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 306 (583)
|++|++++|+++++|..++.+++|+.|++++|.+++++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 44555555555556555666666666666666655443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=8.1e-07 Score=94.85 Aligned_cols=101 Identities=32% Similarity=0.418 Sum_probs=48.6
Q ss_pred CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCC-CCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSL-ALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~-l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
++.|+.|+|++|++++.. .+..+++|++|||++|. +..+|.++. ...|+.|+|++|.. ..+ ..+.+|++|+.||+
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l-~tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNAL-TTL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHH-Hhh-hhHHhhhhhhccch
Confidence 455555666666555553 45556666666666653 344443321 12356666655432 221 23455566666666
Q ss_pred cCCCCCCcCCCc---CCCCCccEEEecCCC
Q 036772 146 GRCISLKSLPTG---INLDSLKVLYLGGCS 172 (583)
Q Consensus 146 ~~c~~l~~lp~~---~~l~~L~~L~L~~c~ 172 (583)
++| .+...... ..+.+|+.|.|.||+
T Consensus 262 syN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 262 SYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 552 22222111 134555555555543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=5e-05 Score=52.70 Aligned_cols=42 Identities=29% Similarity=0.491 Sum_probs=33.6
Q ss_pred CCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCC
Q 036772 290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL 332 (583)
Q Consensus 290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 332 (583)
++|++|++++|+|+++|..+++|++|+.|++++| .+++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4789999999999999988999999999999998 56766543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3.1e-05 Score=86.40 Aligned_cols=130 Identities=26% Similarity=0.261 Sum_probs=86.3
Q ss_pred CCCCCEEEccCCCCCC-cCCCcC--CCCCccEEEecCCC----CcccccccCCCcCEEeccCCCCccccccccCCCCccE
Q 036772 137 LNKLVFLNLGRCISLK-SLPTGI--NLDSLKVLYLGGCS----NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVR 209 (583)
Q Consensus 137 l~~L~~L~L~~c~~l~-~lp~~~--~l~~L~~L~L~~c~----~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~ 209 (583)
-.+|++|++++...+. ..|..+ .+|+|+.|.+.|-. .+..+-..+++|..||++++.++.+ ..++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4578888887743332 122223 58889999888732 2234456678999999999999988 56999999999
Q ss_pred EeeeCCCCCc-cccccccCCCCCcEEEccCCCCCCcc--cc----ccCCCCcccEEEccCCcccc
Q 036772 210 LDLTNCSRLK-SVSNSLCNLKSLQYLFLSGCLKLEKL--PE----EIGNLESLKIMLANETAISQ 267 (583)
Q Consensus 210 L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l--p~----~l~~l~~L~~L~l~~~~i~~ 267 (583)
|.+.+-.... ..-..+.+|++|+.||+|.-...... .. --..+++|+.|+.+++.+.+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 9998754432 12235678999999999985543321 11 11236677777777766554
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=7.7e-05 Score=83.31 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=56.5
Q ss_pred CCccEEEecCCCC--CCCCCCC--CCCCceEEEccCCChhh--hcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772 46 NELRYFQWDGYPL--KSLPSKN--IPEHLVSLEMPHSNIEQ--LWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL 119 (583)
Q Consensus 46 ~~Lr~L~l~~~~l--~~lp~~~--~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 119 (583)
.+|++|+++|... ...|... .+|.|+.|.+.+-.+.. +-.-..++|+|..||+|++ .++.+..++.++||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 4577777766431 1111111 46677777777654432 2233566777777777776 34444556667777777
Q ss_pred eeeCCCCch-hhhhhccCCCCCCEEEccC
Q 036772 120 DLVGCASLI-EIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 120 ~L~~~~~l~-~~~~~i~~l~~L~~L~L~~ 147 (583)
.+.+-.... ..-..+.+|++|+.||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 666533322 1123455677777777765
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00054 Score=63.02 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=78.8
Q ss_pred ccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCC-CCCCcCEEeeeCCC
Q 036772 48 LRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLS-LALNLEWLDLVGCA 125 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~-~l~~L~~L~L~~~~ 125 (583)
=+.+++.++.+..+-.. ....+...+||++|.+..+ ..+..++.|.+|.|.+|++...-|++. .+++|..|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 45666666665444332 2566788888888888777 447788888888888888777777754 45778888888865
Q ss_pred Cchhhh--hhccCCCCCCEEEccCCCCCCcCCCc----C-CCCCccEEEecC
Q 036772 126 SLIEIH--SSIQHLNKLVFLNLGRCISLKSLPTG----I-NLDSLKVLYLGG 170 (583)
Q Consensus 126 ~l~~~~--~~i~~l~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L~~ 170 (583)
. .++. .-+..+++|++|.+-++. +...... + .+++|++||..+
T Consensus 100 i-~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 I-QELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred h-hhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 3 3322 245667788888776632 2222211 1 577777777765
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.12 E-value=9.9e-05 Score=70.64 Aligned_cols=85 Identities=26% Similarity=0.286 Sum_probs=52.6
Q ss_pred CCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCCC------------CCCCCCCCCcCEEeeeCCCCchh
Q 036772 67 PEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLSR------------IPDLSLALNLEWLDLVGCASLIE 129 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~------------~p~l~~l~~L~~L~L~~~~~l~~ 129 (583)
+..+++++|++|.+. .+...+.+-.+|+..+++.- ++.. ++.+-++|+|+..+|++|-....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 566777777777765 24445667777777777753 1211 12345677777777777655444
Q ss_pred hh----hhccCCCCCCEEEccCCCCCCc
Q 036772 130 IH----SSIQHLNKLVFLNLGRCISLKS 153 (583)
Q Consensus 130 ~~----~~i~~l~~L~~L~L~~c~~l~~ 153 (583)
.| ..|.+-+.|++|.|++| .++.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp 134 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGP 134 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCc
Confidence 33 34566777888888764 3443
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.06 E-value=6.8e-05 Score=81.18 Aligned_cols=55 Identities=29% Similarity=0.309 Sum_probs=24.6
Q ss_pred cCCCCcccEEEccCCccccCccEEEeccCCCc-c-cCccCCCCCCCCEEEccCCCCc
Q 036772 249 IGNLESLKIMLANETAISQNLVDMSLVDCGIT-E-LPESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~-~-lp~~l~~l~~L~~L~Ls~n~l~ 303 (583)
...+++++.+.+....+......+.+.+|... + +........+++.|+++.+...
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence 34455566555555553332224455555422 1 1111222233666666666533
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.00031 Score=68.17 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=30.4
Q ss_pred ccEEEeccCCCccc--CccCCCCCCCCEEEccCCCCcccC--hhhhccCcccccccccccccccC
Q 036772 269 LVDMSLVDCGITEL--PESLGRSPSLKFLNLAENDFEKIP--SSIKQLSNLLFLTLQNCKRLQSL 329 (583)
Q Consensus 269 L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~l 329 (583)
+..+-+..|.+.+. -.....++.+..|+|+.+++.+.. +.+..++.|+.|.+.+++-...+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 33344444444332 123445555666666666665332 23455566666666655544443
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=2.6e-05 Score=67.08 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=47.0
Q ss_pred ccEEEecCCCCCCCCCCC----CCCCceEEEccCCChhhhcccc-cCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEee
Q 036772 48 LRYFQWDGYPLKSLPSKN----IPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDL 121 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L 121 (583)
+-.++++.|++..++... ...+|...++++|.++.+|+.+ ...+-++.|+|++|+ +.++| .+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence 334445555544444321 3334445555555555555443 233455555555553 33333 3555555555555
Q ss_pred eCCCCchhhhhhccCCCCCCEEEccC
Q 036772 122 VGCASLIEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 122 ~~~~~l~~~~~~i~~l~~L~~L~L~~ 147 (583)
+.|.. ...|..+..|.+|-.|+..+
T Consensus 108 ~~N~l-~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 108 RFNPL-NAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccCcc-ccchHHHHHHHhHHHhcCCC
Confidence 55432 23344444466666666655
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.94 E-value=0.00059 Score=65.45 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred ccCCCCccEEeeeCCCCCccccc----cccCCCCCcEEEccCCCCCCcccc-------------ccCCCCcccEEEccCC
Q 036772 201 IGNLSRLVRLDLTNCSRLKSVSN----SLCNLKSLQYLFLSGCLKLEKLPE-------------EIGNLESLKIMLANET 263 (583)
Q Consensus 201 i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~c~~l~~lp~-------------~l~~l~~L~~L~l~~~ 263 (583)
+..|++|+..+|++|......|. .+++-+.|++|.+++|..-..--. ...+-+.|+......|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 45566666666666655444332 344556666666666543211111 1223456666666666
Q ss_pred cccc--------------CccEEEeccCCCcc------cCccCCCCCCCCEEEccCCCCcccC-----hhhhccCccccc
Q 036772 264 AISQ--------------NLVDMSLVDCGITE------LPESLGRSPSLKFLNLAENDFEKIP-----SSIKQLSNLLFL 318 (583)
Q Consensus 264 ~i~~--------------~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L 318 (583)
++.. .|+.+.+..|.+.. +-..+..+.+|+.|||..|.++... ..+..-+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 5432 26667777776643 1234556788999999998877322 223344567888
Q ss_pred ccccc
Q 036772 319 TLQNC 323 (583)
Q Consensus 319 ~L~~c 323 (583)
.+.+|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 88887
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=8.9e-05 Score=63.84 Aligned_cols=103 Identities=26% Similarity=0.363 Sum_probs=67.6
Q ss_pred CccEEeeeCCCCCc--cccccccCCCCCcEEEccCCCCCCccccccCC-CCcccEEEccCCccccCccEEEeccCCCccc
Q 036772 206 RLVRLDLTNCSRLK--SVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN-LESLKIMLANETAISQNLVDMSLVDCGITEL 282 (583)
Q Consensus 206 ~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~-l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l 282 (583)
-+..++|++|.... ..+..+.+...|+..++++| .+..+|+.+.. .+. ++.|++++|.++++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t--------------~t~lNl~~neisdv 92 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPT--------------ATTLNLANNEISDV 92 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccch--------------hhhhhcchhhhhhc
Confidence 34556677765431 23334445556666677764 34445544332 223 44555555666668
Q ss_pred CccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 283 PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 283 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++
T Consensus 93 PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 93 PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 98899999999999999999888888888888888887765
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.88 E-value=0.00015 Score=78.51 Aligned_cols=168 Identities=25% Similarity=0.304 Sum_probs=90.9
Q ss_pred CCCCCCEEEccCCCCCCcCC---CcCCCCCccEEEecCC-CCcc-------cccccCCCcCEEeccCCC-Cccc--cccc
Q 036772 136 HLNKLVFLNLGRCISLKSLP---TGINLDSLKVLYLGGC-SNLK-------RFLEISCNIENLDLSETA-IEEL--PSSI 201 (583)
Q Consensus 136 ~l~~L~~L~L~~c~~l~~lp---~~~~l~~L~~L~L~~c-~~l~-------~~~~~~~~L~~L~L~~~~-i~~l--p~~i 201 (583)
.++.|+.|.+.+|..+.... ....++.|+.|++++| .... .+.....+|+.|+++.+. ++.. ....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36667777776666665522 1125677777777663 2211 122223466666666655 4421 1112
Q ss_pred cCCCCccEEeeeCCCCCcc--ccccccCCCCCcEEEccCCCCCCc--cccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772 202 GNLSRLVRLDLTNCSRLKS--VSNSLCNLKSLQYLFLSGCLKLEK--LPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277 (583)
Q Consensus 202 ~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~ 277 (583)
..+++|+.|.+.+|..++. +-....+++.|++|++++|..+.. +.....++++|+.|.+....--..++.+.+.++
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~ 345 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL 345 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence 2377888888888775322 334455678888888888877632 333344456666554443332222444444443
Q ss_pred CCc---c-cCccCCCCCCCCEEEccCCCCc
Q 036772 278 GIT---E-LPESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 278 ~l~---~-lp~~l~~l~~L~~L~Ls~n~l~ 303 (583)
... . ..-.+..++.|+.+.+..+...
T Consensus 346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 346 LTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred hccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 221 1 2234556777777777776633
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.67 E-value=0.0026 Score=58.63 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=82.8
Q ss_pred ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccc-cCCCCccEEeccCCCCC--CCCCCCCCCCCcC
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQL--SRIPDLSLALNLE 117 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~Ls~~~~l--~~~p~l~~l~~L~ 117 (583)
++...+..-.+++++|.+..++....++.|.+|.+.+|.|..+...+ ..+++|+.|.|.+|.+. .++..+..+|.|+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44455678889999999998887778999999999999999887765 45778999999998533 2344577889999
Q ss_pred EEeeeCCCCchhhh---hhccCCCCCCEEEccC
Q 036772 118 WLDLVGCASLIEIH---SSIQHLNKLVFLNLGR 147 (583)
Q Consensus 118 ~L~L~~~~~l~~~~---~~i~~l~~L~~L~L~~ 147 (583)
+|.+-+|.....-. -.+..+++|+.||.+.
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999876433211 1356789999999876
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.60 E-value=0.00087 Score=64.20 Aligned_cols=80 Identities=29% Similarity=0.235 Sum_probs=39.0
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCC--hh-hhcccccCCCCccEEeccCCCCC--CCCCCCCCCCCcCEEe
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN--IE-QLWNGVQNLAALKRLNLSYCKQL--SRIPDLSLALNLEWLD 120 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--l~-~l~~~~~~l~~L~~L~Ls~~~~l--~~~p~l~~l~~L~~L~ 120 (583)
..|++|+..+..++++-....+++|+.|.++.|. +. .+..-...+|+|++|+|+.|++- ..++.+..+.||..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3555555555555555444455556666665552 22 22222334455556655555432 1222344445555555
Q ss_pred eeCCC
Q 036772 121 LVGCA 125 (583)
Q Consensus 121 L~~~~ 125 (583)
+.+|.
T Consensus 123 l~n~~ 127 (260)
T KOG2739|consen 123 LFNCS 127 (260)
T ss_pred cccCC
Confidence 55554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.59 E-value=0.0057 Score=58.71 Aligned_cols=58 Identities=26% Similarity=0.243 Sum_probs=28.9
Q ss_pred CCCceEEEccCCChhhhcccccCCCCccEEeccCC--CCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYC--KQLSRIPD-LSLALNLEWLDLVGCA 125 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~~~ 125 (583)
...|+.|++.+..++.+ ..+-.+++||.|.++.| +....++. ...+|+|++|++++|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 34444455544444433 23445666666666666 33333332 2334666666666654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.0011 Score=63.98 Aligned_cols=58 Identities=22% Similarity=0.140 Sum_probs=31.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc--ccCCCCccEEeccCCCCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQL 104 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~l~~L~~L~Ls~~~~l 104 (583)
.|++|.++-|.+++|.+...+++|++|.|+.|.|..+.+- ++++++|++|.|..|.-.
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 5555666655555555444555556666655555544322 455555555555555433
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.82 E-value=0.01 Score=34.27 Aligned_cols=20 Identities=40% Similarity=0.780 Sum_probs=12.8
Q ss_pred CCCEEEccCCCCcccChhhh
Q 036772 291 SLKFLNLAENDFEKIPSSIK 310 (583)
Q Consensus 291 ~L~~L~Ls~n~l~~lp~~i~ 310 (583)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 36667777777666666544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.0014 Score=63.15 Aligned_cols=78 Identities=21% Similarity=0.095 Sum_probs=43.4
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCC--CCCCCCCCCCcCEEeeeCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLS--RIPDLSLALNLEWLDLVGC 124 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~--~~p~l~~l~~L~~L~L~~~ 124 (583)
+.+.|+..||.+..+.-.-.++.|+.|.|+-|+|+.+ ..+..+++|+.|.|..|.+.. ++.-+.++|+|+.|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 4566666677666654333566666666666666665 335566666666666653221 1112445555555555554
Q ss_pred C
Q 036772 125 A 125 (583)
Q Consensus 125 ~ 125 (583)
.
T Consensus 99 P 99 (388)
T KOG2123|consen 99 P 99 (388)
T ss_pred C
Confidence 3
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.04 E-value=0.15 Score=44.02 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=4.7
Q ss_pred CCCCCCcCEEee
Q 036772 110 LSLALNLEWLDL 121 (583)
Q Consensus 110 l~~l~~L~~L~L 121 (583)
|..+++|+.+.+
T Consensus 77 F~~~~~l~~i~~ 88 (129)
T PF13306_consen 77 FSNCTNLKNIDI 88 (129)
T ss_dssp TTT-TTECEEEE
T ss_pred cccccccccccc
Confidence 333444444444
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.76 E-value=0.04 Score=29.59 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=7.5
Q ss_pred CCCEEEccCCCCcccC
Q 036772 291 SLKFLNLAENDFEKIP 306 (583)
Q Consensus 291 ~L~~L~Ls~n~l~~lp 306 (583)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666665554
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.33 E-value=0.27 Score=42.48 Aligned_cols=113 Identities=19% Similarity=0.278 Sum_probs=58.5
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l 90 (583)
++.+|+.+.+.. ....+......-..+|+.+.+.+. +..++... .++.|+.+.+.+ .+..++.. +..+
T Consensus 10 ~~~~l~~i~~~~-------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 10 NCSNLESITFPN-------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp T-TT--EEEETS-------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCCCCEEEECC-------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 677888888864 234565543333358999999874 88887653 666899999976 66666544 7789
Q ss_pred CCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCC
Q 036772 91 AALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKL 140 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L 140 (583)
++|+.+++..+ ...++ .|... +|+.+.+.. ....++ ..+.++++|
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 99999999764 33333 36676 888888775 222333 345555554
No 73
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.25 E-value=0.074 Score=29.74 Aligned_cols=20 Identities=55% Similarity=1.081 Sum_probs=17.8
Q ss_pred CceEEEccCCChhhhccccc
Q 036772 69 HLVSLEMPHSNIEQLWNGVQ 88 (583)
Q Consensus 69 ~L~~L~L~~~~l~~l~~~~~ 88 (583)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999753
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.95 E-value=0.055 Score=31.19 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=9.7
Q ss_pred cCEEeccCCCCcccccccc
Q 036772 184 IENLDLSETAIEELPSSIG 202 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~~i~ 202 (583)
|++|++++|.++.+|++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555555555555443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.13 E-value=0.09 Score=48.77 Aligned_cols=94 Identities=28% Similarity=0.335 Sum_probs=62.6
Q ss_pred cCCCCCCCCCCC-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC--CCC-CCCCcCEEeeeCCCCch
Q 036772 54 DGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP--DLS-LALNLEWLDLVGCASLI 128 (583)
Q Consensus 54 ~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~-~l~~L~~L~L~~~~~l~ 128 (583)
+.+..-++|... .--.++.+|-+++.|.... +.+.+++.++.|.+.+|+...+.- .++ -+++|+.|+|++|..++
T Consensus 86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 344444666554 3446889999998877432 447788888888888887776532 222 45788888888887766
Q ss_pred hhh-hhccCCCCCCEEEccC
Q 036772 129 EIH-SSIQHLNKLVFLNLGR 147 (583)
Q Consensus 129 ~~~-~~i~~l~~L~~L~L~~ 147 (583)
+-. ..+..+++|+.|.+.+
T Consensus 166 ~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 166 DGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hhHHHHHHHhhhhHHHHhcC
Confidence 533 3456677777776655
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.36 E-value=0.17 Score=27.10 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=7.1
Q ss_pred CccEEEecCCCCCCCC
Q 036772 47 ELRYFQWDGYPLKSLP 62 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp 62 (583)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666655554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.89 E-value=0.37 Score=28.82 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.0
Q ss_pred CCCCCEEEccCCCCcccChhh
Q 036772 289 SPSLKFLNLAENDFEKIPSSI 309 (583)
Q Consensus 289 l~~L~~L~Ls~n~l~~lp~~i 309 (583)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999998888654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.89 E-value=0.37 Score=28.82 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.0
Q ss_pred CCCCCEEEccCCCCcccChhh
Q 036772 289 SPSLKFLNLAENDFEKIPSSI 309 (583)
Q Consensus 289 l~~L~~L~Ls~n~l~~lp~~i 309 (583)
+++|+.|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467889999999998888654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.40 E-value=0.14 Score=47.51 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=41.2
Q ss_pred CcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccc
Q 036772 115 NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKR 176 (583)
Q Consensus 115 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~ 176 (583)
.++.++-+++....+--+.+..+++++.|.+.+|..+.+.--.. -.++|+.|++++|..++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 45667777766555555667777778888887777766432111 467788888888876653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.93 E-value=0.027 Score=53.17 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=48.7
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772 46 NELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC 124 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~ 124 (583)
...+.||++.+.+..+...| -++.|+.|+++.|.+..+|+.++.+..++.+++..|......-.+...+.++++++.++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 45566666666665555555 45566666666666666666666666666666655533322225666666666666665
Q ss_pred CCc
Q 036772 125 ASL 127 (583)
Q Consensus 125 ~~l 127 (583)
...
T Consensus 122 ~~~ 124 (326)
T KOG0473|consen 122 EFF 124 (326)
T ss_pred cch
Confidence 533
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=83.53 E-value=0.016 Score=62.29 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=39.6
Q ss_pred ceEEEccCCChhh-----hcccccCCCCccEEeccCCCCCCCCC-----CCCCC-CCcCEEeeeCCCCch----hhhhhc
Q 036772 70 LVSLEMPHSNIEQ-----LWNGVQNLAALKRLNLSYCKQLSRIP-----DLSLA-LNLEWLDLVGCASLI----EIHSSI 134 (583)
Q Consensus 70 L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l-~~L~~L~L~~~~~l~----~~~~~i 134 (583)
+..|.|.+|.+.. +-..+...+.|..|++++|.....-. .+... ..|++|++..|.... .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5556666655542 33345566666666666665442110 11221 345555555554332 233444
Q ss_pred cCCCCCCEEEccCCC
Q 036772 135 QHLNKLVFLNLGRCI 149 (583)
Q Consensus 135 ~~l~~L~~L~L~~c~ 149 (583)
.....++.++++.|.
T Consensus 169 ~~~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNG 183 (478)
T ss_pred hcccchhHHHHHhcc
Confidence 455566666665543
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.03 E-value=0.08 Score=50.12 Aligned_cols=82 Identities=12% Similarity=-0.048 Sum_probs=46.5
Q ss_pred CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
..+....||++.|.+..+...++.++.|..||++.++.-....|+.....+..+++..| .....|.+.+..+.++++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhh
Confidence 34555666666666666655566666666666665543333335555555555555543 34455666666666666666
Q ss_pred cCC
Q 036772 146 GRC 148 (583)
Q Consensus 146 ~~c 148 (583)
.++
T Consensus 119 k~~ 121 (326)
T KOG0473|consen 119 KKT 121 (326)
T ss_pred ccC
Confidence 553
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=78.74 E-value=0.055 Score=58.20 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=35.6
Q ss_pred EEEeccCCCcc-----cCccCCCC-CCCCEEEccCCCCc-----ccChhhhccCccccccccccc
Q 036772 271 DMSLVDCGITE-----LPESLGRS-PSLKFLNLAENDFE-----KIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 271 ~L~L~~~~l~~-----lp~~l~~l-~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 324 (583)
.|++..|.+.+ +...+..+ ..++.++++.|.++ .+...+..++.++.|.++.++
T Consensus 237 el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 237 ELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 35555555443 34445555 67888888888876 445556677788888887764
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.73 E-value=1.5 Score=26.35 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=12.4
Q ss_pred CCccEEEecCCCCCCCCC
Q 036772 46 NELRYFQWDGYPLKSLPS 63 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~ 63 (583)
.+|++|+.++|.++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 466777777777777765
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.82 E-value=4.5 Score=24.10 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=5.9
Q ss_pred CCCEEEccCCCCC
Q 036772 139 KLVFLNLGRCISL 151 (583)
Q Consensus 139 ~L~~L~L~~c~~l 151 (583)
+|+.|+|++|..+
T Consensus 3 ~L~~L~l~~C~~i 15 (26)
T smart00367 3 NLRELDLSGCTNI 15 (26)
T ss_pred CCCEeCCCCCCCc
Confidence 4444444444443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.03 E-value=6 Score=23.83 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=12.6
Q ss_pred CCCCCEEEccCCCCccc
Q 036772 289 SPSLKFLNLAENDFEKI 305 (583)
Q Consensus 289 l~~L~~L~Ls~n~l~~l 305 (583)
+++|+.|++++|.|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888887654
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=54.33 E-value=6.1 Score=22.91 Aligned_cols=14 Identities=43% Similarity=0.302 Sum_probs=6.6
Q ss_pred CCcCEEeeeCCCCc
Q 036772 114 LNLEWLDLVGCASL 127 (583)
Q Consensus 114 ~~L~~L~L~~~~~l 127 (583)
++|++|+|++|...
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666665533
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.74 E-value=12 Score=40.21 Aligned_cols=35 Identities=26% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCCceEEEccCCChhhhcc---cccCCCCccEEeccCC
Q 036772 67 PEHLVSLEMPHSNIEQLWN---GVQNLAALKRLNLSYC 101 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~---~~~~l~~L~~L~Ls~~ 101 (583)
.+.+..++|++|++..+.. --+..|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3455556666665554421 1345566666666665
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.24 E-value=19 Score=21.91 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCc
Q 036772 290 PSLKFLNLAENDFE 303 (583)
Q Consensus 290 ~~L~~L~Ls~n~l~ 303 (583)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 47888999988876
No 90
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=41.09 E-value=51 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=21.1
Q ss_pred ccCCCccEEEecCCCCCCCCCCCCCCCceEEEcc
Q 036772 43 SFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMP 76 (583)
Q Consensus 43 ~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~ 76 (583)
.+|.++++|.+.++--+.+....-+++|++|.+.
T Consensus 9 ~iP~~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 9 SIPSSLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred eeCCCCeEEEECCccCccCCCCccCCCceEEEee
Confidence 4567888888854434444444556667777664
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=33.13 E-value=1e+02 Score=32.86 Aligned_cols=101 Identities=24% Similarity=0.196 Sum_probs=48.4
Q ss_pred CCccEEEecCCCCC-----CCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCC----CCCCc
Q 036772 46 NELRYFQWDGYPLK-----SLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLS----LALNL 116 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~-----~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~----~l~~L 116 (583)
..+|+++++.+++. .|+.....-+|++=.++.-.+.+++. -..=..+.+++|+.|..-.++|... .-.-+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~-qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLI-QSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhh-hhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 35788888888753 23332233222222222222222221 0112246678888887777777422 22346
Q ss_pred CEEeeeCCCCchh-h--hhhccCCCCCCEEEccC
Q 036772 117 EWLDLVGCASLIE-I--HSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 117 ~~L~L~~~~~l~~-~--~~~i~~l~~L~~L~L~~ 147 (583)
+.++.++-....+ . +-..+.-++|.+.+++.
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ 277 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSR 277 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhcc
Confidence 6666665332221 1 11234455777776664
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.38 E-value=19 Score=38.93 Aligned_cols=17 Identities=29% Similarity=0.894 Sum_probs=10.5
Q ss_pred CC-CCccceEEEEEEEec
Q 036772 445 WV-NNNFVGFALCAIVPD 461 (583)
Q Consensus 445 ~~-~~~~~gf~~c~v~~~ 461 (583)
|+ ..+.+||++-.||.-
T Consensus 440 ~~~~~~~l~ftv~G~f~d 457 (585)
T KOG3763|consen 440 WYQTGNLLGFTVAGVFRD 457 (585)
T ss_pred eecccceEEEEEEEEeec
Confidence 54 455677777766653
Done!