Query 036772
Match_columns 583
No_of_seqs 525 out of 4583
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 08:32:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-31 1.7E-35 300.5 18.1 332 14-363 267-717 (768)
2 4eco_A Uncharacterized protein 100.0 4.2E-30 1.4E-34 286.5 21.9 282 37-323 198-546 (636)
3 3rgz_A Protein brassinosteroid 100.0 1.1E-29 3.7E-34 289.4 20.4 284 47-330 248-555 (768)
4 3t6q_A CD180 antigen; protein- 100.0 2.3E-28 8E-33 271.2 30.1 305 12-323 53-410 (606)
5 4eco_A Uncharacterized protein 100.0 5.4E-29 1.8E-33 277.6 22.8 315 4-331 194-583 (636)
6 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-28 3.8E-33 268.7 22.9 166 183-364 303-482 (520)
7 4ecn_A Leucine-rich repeat pro 100.0 4E-28 1.4E-32 276.3 27.2 282 37-324 440-787 (876)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-28 2E-32 268.0 27.4 106 14-125 54-164 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-28 1.8E-32 268.4 26.5 301 13-323 77-507 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 6.1E-28 2.1E-32 274.8 25.5 319 4-331 436-823 (876)
11 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-28 2.8E-32 261.8 24.5 298 16-330 21-437 (520)
12 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-28 1.5E-32 265.6 21.4 115 14-134 48-168 (549)
13 4fmz_A Internalin; leucine ric 100.0 3.3E-27 1.1E-31 243.3 26.2 291 14-323 42-343 (347)
14 3v47_A TOLL-like receptor 5B a 100.0 1.2E-27 4.1E-32 255.9 23.6 311 38-362 47-407 (455)
15 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-27 4.7E-32 262.6 24.2 321 16-364 52-511 (562)
16 3v47_A TOLL-like receptor 5B a 100.0 1.3E-27 4.4E-32 255.7 23.1 306 13-325 51-407 (455)
17 3t6q_A CD180 antigen; protein- 100.0 4.7E-27 1.6E-31 260.6 27.7 277 71-362 257-559 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.5E-27 2.2E-31 257.3 25.7 299 14-331 29-467 (562)
19 3o6n_A APL1; leucine-rich repe 100.0 5.9E-27 2E-31 245.6 24.2 305 14-363 43-352 (390)
20 2z63_A TOLL-like receptor 4, v 100.0 2.9E-27 1E-31 260.1 22.0 121 202-323 344-480 (570)
21 4fmz_A Internalin; leucine ric 100.0 2.2E-26 7.5E-31 237.2 27.2 294 41-360 40-343 (347)
22 1o6v_A Internalin A; bacterial 99.9 2.3E-26 7.7E-31 247.1 26.5 293 14-329 44-346 (466)
23 1o6v_A Internalin A; bacterial 99.9 2.9E-26 1E-30 246.2 26.7 289 14-323 66-363 (466)
24 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-26 1.1E-30 263.4 28.5 108 14-127 46-161 (844)
25 2id5_A Lingo-1, leucine rich r 99.9 4E-26 1.4E-30 245.8 27.3 271 35-323 24-306 (477)
26 3j0a_A TOLL-like receptor 5; m 99.9 6E-26 2E-30 261.2 29.8 307 14-331 22-398 (844)
27 2z81_A CD282 antigen, TOLL-lik 99.9 1.9E-26 6.4E-31 252.7 23.6 298 16-323 26-441 (549)
28 2id5_A Lingo-1, leucine rich r 99.9 6.8E-26 2.3E-30 244.0 26.7 267 47-329 12-287 (477)
29 3oja_B Anopheles plasmodium-re 99.9 3E-26 1E-30 253.7 23.9 282 14-324 49-335 (597)
30 1ziw_A TOLL-like receptor 3; i 99.9 2.4E-25 8.3E-30 250.3 30.7 341 14-362 47-492 (680)
31 2z63_A TOLL-like receptor 4, v 99.9 2.4E-26 8.4E-31 252.8 22.0 142 182-325 282-457 (570)
32 3o6n_A APL1; leucine-rich repe 99.9 1.4E-25 4.6E-30 235.2 24.1 290 46-375 45-342 (390)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.7E-25 1.3E-29 248.8 29.2 309 16-330 222-576 (680)
34 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.3E-29 232.2 27.8 308 16-363 91-409 (454)
35 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-24 3.7E-29 233.0 26.5 280 13-327 39-321 (457)
36 3oja_B Anopheles plasmodium-re 99.9 5.9E-25 2E-29 243.3 24.2 260 46-330 51-317 (597)
37 1xku_A Decorin; proteoglycan, 99.9 4.4E-24 1.5E-28 218.5 27.6 279 17-323 32-329 (330)
38 1jl5_A Outer protein YOPM; leu 99.9 5.6E-24 1.9E-28 227.2 29.0 271 45-343 90-367 (454)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-24 1.2E-28 229.0 26.4 296 39-377 36-344 (457)
40 2ft3_A Biglycan; proteoglycan, 99.9 3.3E-24 1.1E-28 219.7 23.5 279 17-324 34-331 (332)
41 4fcg_A Uncharacterized protein 99.9 1.7E-24 5.8E-29 221.5 16.5 230 67-323 80-311 (328)
42 2ft3_A Biglycan; proteoglycan, 99.9 8.4E-24 2.9E-28 216.6 20.8 258 46-324 33-305 (332)
43 1xku_A Decorin; proteoglycan, 99.9 3.2E-23 1.1E-27 212.1 25.1 258 46-324 31-304 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-23 1.3E-27 229.8 27.6 125 17-148 53-183 (635)
45 4fcg_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 217.6 19.2 224 46-305 81-316 (328)
46 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-24 5.5E-29 220.2 14.2 247 68-330 50-308 (313)
47 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-22 7.1E-27 222.1 27.2 249 47-324 41-295 (622)
48 2z80_A TOLL-like receptor 2, v 99.9 1.8E-23 6.1E-28 216.1 17.3 261 47-324 32-312 (353)
49 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-23 7.1E-28 212.0 13.6 245 91-364 50-305 (313)
50 3g06_A SSPH2 (leucine-rich rep 99.9 7.1E-22 2.4E-26 217.8 25.9 262 16-313 40-308 (622)
51 3zyi_A Leucine-rich repeat-con 99.9 8.7E-22 3E-26 210.4 24.0 241 46-303 54-303 (452)
52 4g8a_A TOLL-like receptor 4; l 99.9 7.3E-22 2.5E-26 219.4 24.0 131 41-172 47-184 (635)
53 3zyj_A Leucine-rich repeat-con 99.9 1.1E-21 3.8E-26 208.9 22.9 241 46-303 43-292 (440)
54 2z66_A Variable lymphocyte rec 99.9 5E-22 1.7E-26 200.9 17.9 239 49-303 10-261 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-22 4.8E-27 206.2 13.2 233 89-329 32-278 (317)
56 1z7x_W Ribonuclease inhibitor; 99.9 2.2E-24 7.6E-29 230.8 -2.1 302 16-323 3-380 (461)
57 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-21 5.6E-26 195.1 17.8 215 48-265 13-237 (285)
58 2z66_A Variable lymphocyte rec 99.9 1.5E-21 5.3E-26 197.3 16.6 234 71-323 10-258 (306)
59 3zyj_A Leucine-rich repeat-con 99.9 1.2E-20 4.2E-25 200.8 22.7 229 35-267 56-293 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-20 4.5E-25 201.2 22.4 224 43-267 72-304 (452)
61 2z80_A TOLL-like receptor 2, v 99.9 2.8E-21 9.5E-26 199.6 16.1 267 15-305 30-316 (353)
62 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-23 7.9E-28 222.9 0.2 308 14-324 26-409 (461)
63 1ozn_A Reticulon 4 receptor; N 99.8 4.1E-20 1.4E-24 184.9 20.8 218 70-323 13-235 (285)
64 3oja_A Leucine-rich immune mol 99.8 9.4E-21 3.2E-25 204.1 14.3 234 68-326 34-275 (487)
65 3o53_A Protein LRIM1, AGAP0063 99.8 5.4E-21 1.9E-25 194.4 9.7 226 93-323 12-247 (317)
66 1wwl_A Monocyte differentiatio 99.8 2.9E-21 9.8E-26 196.0 6.5 233 46-323 43-306 (312)
67 1wwl_A Monocyte differentiatio 99.8 9.6E-22 3.3E-26 199.6 0.4 238 89-362 41-308 (312)
68 3oja_A Leucine-rich immune mol 99.8 7.8E-20 2.7E-24 197.0 14.4 217 87-325 30-249 (487)
69 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.7E-23 173.7 17.7 217 50-323 11-234 (276)
70 1p9a_G Platelet glycoprotein I 99.8 2.6E-18 9E-23 172.3 20.1 198 87-323 6-205 (290)
71 2z62_A TOLL-like receptor 4, v 99.8 2.4E-18 8.2E-23 171.1 19.2 200 43-303 25-237 (276)
72 3ogk_B Coronatine-insensitive 99.8 2.5E-20 8.7E-25 205.8 3.6 277 46-324 192-524 (592)
73 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 165.0 22.5 102 45-147 15-118 (270)
74 4ay9_X Follicle-stimulating ho 99.8 3.5E-18 1.2E-22 176.2 17.8 190 48-239 11-212 (350)
75 2ast_B S-phase kinase-associat 99.8 1.8E-19 6.2E-24 184.4 7.0 196 68-263 70-282 (336)
76 3rfs_A Internalin B, repeat mo 99.8 7.9E-19 2.7E-23 174.4 10.8 39 286-330 201-239 (272)
77 2xwt_C Thyrotropin receptor; s 99.8 7.4E-18 2.5E-22 163.9 16.7 205 80-325 23-238 (239)
78 2o6q_A Variable lymphocyte rec 99.8 4.1E-17 1.4E-21 161.8 21.5 167 69-260 17-188 (270)
79 1p9a_G Platelet glycoprotein I 99.8 2.1E-17 7.1E-22 165.7 19.1 202 41-303 6-208 (290)
80 2xwt_C Thyrotropin receptor; s 99.7 1.2E-17 4E-22 162.5 15.4 204 57-300 22-236 (239)
81 2ast_B S-phase kinase-associat 99.7 1.1E-18 3.8E-23 178.5 7.3 238 67-323 46-303 (336)
82 3rfs_A Internalin B, repeat mo 99.7 2E-17 6.8E-22 164.2 16.1 205 66-314 39-247 (272)
83 1h6u_A Internalin H; cell adhe 99.7 2.7E-17 9.3E-22 166.3 17.1 195 46-308 41-235 (308)
84 1h6u_A Internalin H; cell adhe 99.7 3.5E-17 1.2E-21 165.6 17.8 196 88-330 38-233 (308)
85 4glp_A Monocyte differentiatio 99.7 1.8E-17 6E-22 167.9 13.8 219 66-323 62-304 (310)
86 2p1m_B Transport inhibitor res 99.7 1.4E-19 4.8E-24 199.8 -1.8 190 14-213 103-346 (594)
87 2ca6_A RAN GTPase-activating p 99.7 1E-18 3.5E-23 182.6 3.4 230 66-323 30-313 (386)
88 3ogk_B Coronatine-insensitive 99.7 8.2E-19 2.8E-23 193.6 1.6 262 41-304 216-527 (592)
89 2ca6_A RAN GTPase-activating p 99.7 9E-19 3.1E-23 183.0 0.1 243 33-306 20-319 (386)
90 3m19_A Variable lymphocyte rec 99.7 6.7E-16 2.3E-20 151.2 18.4 172 46-240 14-190 (251)
91 2p1m_B Transport inhibitor res 99.7 1.6E-18 5.5E-23 191.3 -2.7 307 14-324 64-467 (594)
92 3m19_A Variable lymphocyte rec 99.7 1.5E-15 5E-20 148.8 18.1 176 68-305 14-194 (251)
93 3cvr_A Invasion plasmid antige 99.7 6.6E-16 2.3E-20 168.2 16.6 189 46-253 59-254 (571)
94 3cvr_A Invasion plasmid antige 99.7 6.3E-16 2.1E-20 168.4 15.9 189 17-230 60-255 (571)
95 4ay9_X Follicle-stimulating ho 99.7 2.3E-15 7.9E-20 155.0 19.1 220 71-330 12-240 (350)
96 4glp_A Monocyte differentiatio 99.7 2.4E-16 8.3E-21 159.4 10.8 217 114-362 64-306 (310)
97 3goz_A Leucine-rich repeat-con 99.7 1.3E-17 4.3E-22 172.8 1.3 122 50-172 2-149 (362)
98 3goz_A Leucine-rich repeat-con 99.6 1.2E-16 4.1E-21 165.4 3.9 243 72-324 2-295 (362)
99 1h6t_A Internalin B; cell adhe 99.6 5.2E-15 1.8E-19 148.2 14.9 37 286-323 174-210 (291)
100 2o6s_A Variable lymphocyte rec 99.6 1.2E-14 4.2E-19 137.8 14.2 175 49-253 10-189 (208)
101 1h6t_A Internalin B; cell adhe 99.6 7E-15 2.4E-19 147.3 12.5 166 46-240 46-211 (291)
102 1m9s_A Internalin B; cell inva 99.6 6.8E-15 2.3E-19 161.9 12.7 174 88-306 40-213 (605)
103 4ezg_A Putative uncharacterize 99.6 1.1E-14 3.8E-19 137.0 12.1 122 47-169 45-167 (197)
104 1m9s_A Internalin B; cell inva 99.6 1.6E-14 5.6E-19 158.8 13.9 169 42-240 40-208 (605)
105 2o6s_A Variable lymphocyte rec 99.6 4.1E-14 1.4E-18 134.2 14.5 166 34-230 19-190 (208)
106 4ezg_A Putative uncharacterize 99.5 1.5E-14 5.2E-19 136.0 10.0 81 66-148 42-122 (197)
107 1dce_A Protein (RAB geranylger 99.5 1.4E-16 4.8E-21 174.1 -5.6 189 110-319 345-566 (567)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 3.4E-13 1.2E-17 129.2 15.0 100 48-148 13-115 (220)
109 2v9t_B SLIT homolog 2 protein 99.5 3.3E-13 1.1E-17 129.3 14.9 129 182-323 32-162 (220)
110 1xeu_A Internalin C; cellular 99.5 8.9E-14 3.1E-18 137.1 11.1 172 67-307 18-189 (263)
111 2xot_A Amphoterin-induced prot 99.5 1.5E-13 5E-18 142.1 13.1 99 48-147 20-121 (361)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 3.7E-13 1.3E-17 128.9 14.9 128 183-323 33-163 (220)
113 3e6j_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 128.9 15.5 77 48-125 21-99 (229)
114 2xot_A Amphoterin-induced prot 99.5 4.6E-13 1.6E-17 138.3 16.1 129 181-323 63-199 (361)
115 3e6j_A Variable lymphocyte rec 99.5 3.4E-13 1.1E-17 130.0 13.9 145 164-323 22-169 (229)
116 2v9t_B SLIT homolog 2 protein 99.5 5.4E-13 1.9E-17 127.8 14.6 74 49-123 14-89 (220)
117 1xeu_A Internalin C; cellular 99.5 7.4E-14 2.5E-18 137.7 8.5 101 41-147 37-137 (263)
118 1dce_A Protein (RAB geranylger 99.5 1.5E-15 5.3E-20 165.9 -4.3 192 66-297 347-567 (567)
119 2ell_A Acidic leucine-rich nuc 99.4 2.6E-13 8.9E-18 124.0 10.7 132 182-330 24-163 (168)
120 2je0_A Acidic leucine-rich nuc 99.4 5.3E-13 1.8E-17 119.3 8.5 125 182-322 17-149 (149)
121 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.8E-18 155.8 2.7 118 84-225 217-336 (727)
122 2ell_A Acidic leucine-rich nuc 99.4 1.8E-12 6.2E-17 118.4 9.8 79 68-147 24-104 (168)
123 4b8c_D Glucose-repressible alc 99.3 8.8E-13 3E-17 148.5 6.7 116 131-249 217-336 (727)
124 2wfh_A SLIT homolog 2 protein 99.3 1.3E-11 4.6E-16 115.4 13.6 123 48-172 12-137 (193)
125 1w8a_A SLIT protein; signaling 99.3 1.1E-11 3.6E-16 116.0 12.3 124 48-172 10-137 (192)
126 2je0_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 114.0 7.3 101 46-147 17-122 (149)
127 1w8a_A SLIT protein; signaling 99.3 1.7E-11 5.9E-16 114.6 12.1 123 185-323 11-136 (192)
128 1a9n_A U2A', U2A'; complex (nu 99.3 9E-12 3.1E-16 114.7 8.7 124 184-324 21-151 (176)
129 2wfh_A SLIT homolog 2 protein 99.3 4.6E-11 1.6E-15 111.8 13.1 81 183-263 32-112 (193)
130 3sb4_A Hypothetical leucine ri 99.2 2.1E-11 7.3E-16 124.1 11.1 211 90-319 100-327 (329)
131 1a9n_A U2A', U2A'; complex (nu 99.2 7E-12 2.4E-16 115.4 6.6 124 46-172 19-151 (176)
132 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 107.3 13.1 124 184-323 9-134 (177)
133 2o6r_A Variable lymphocyte rec 99.2 1.9E-10 6.3E-15 105.9 13.7 124 47-172 8-135 (177)
134 3sb4_A Hypothetical leucine ri 99.1 8.8E-10 3E-14 112.0 14.8 96 184-297 228-328 (329)
135 2r9u_A Variable lymphocyte rec 99.1 6.7E-10 2.3E-14 101.9 11.1 111 184-310 14-125 (174)
136 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 99.9 11.3 108 183-306 10-118 (170)
137 1ds9_A Outer arm dynein; leuci 99.0 1.5E-11 5.2E-16 115.5 -2.4 120 182-319 48-180 (198)
138 3g39_A Variable lymphocyte rec 99.0 2.5E-09 8.5E-14 97.7 10.9 101 47-148 10-112 (170)
139 4fdw_A Leucine rich hypothetic 99.0 4.6E-08 1.6E-12 102.0 21.3 181 46-237 113-308 (401)
140 2r9u_A Variable lymphocyte rec 98.9 4.1E-09 1.4E-13 96.6 10.9 100 48-148 14-115 (174)
141 1ds9_A Outer arm dynein; leuci 98.9 3.8E-12 1.3E-16 119.7 -9.9 111 37-149 40-151 (198)
142 4fdw_A Leucine rich hypothetic 98.8 2E-07 6.8E-12 97.2 19.9 252 14-303 111-383 (401)
143 4fs7_A Uncharacterized protein 98.7 6.5E-07 2.2E-11 93.1 19.0 59 40-101 66-127 (394)
144 2ifg_A High affinity nerve gro 98.7 8.1E-08 2.8E-12 98.1 11.1 105 186-305 12-118 (347)
145 3un9_A NLR family member X1; l 98.7 2.9E-09 1E-13 110.0 0.0 21 283-303 232-252 (372)
146 3un9_A NLR family member X1; l 98.6 1.1E-08 3.9E-13 105.5 1.9 156 160-324 71-250 (372)
147 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.6E-12 94.8 9.3 96 74-171 14-113 (347)
148 2ra8_A Uncharacterized protein 98.5 2E-07 6.9E-12 95.6 8.0 129 86-216 167-318 (362)
149 4fs7_A Uncharacterized protein 98.3 3E-05 1E-09 80.5 20.9 273 14-322 69-375 (394)
150 2ra8_A Uncharacterized protein 98.3 7.1E-07 2.4E-11 91.4 6.8 36 288-323 277-317 (362)
151 3e4g_A ATP synthase subunit S, 98.2 1.8E-06 6.2E-11 78.3 5.6 94 60-153 52-154 (176)
152 3e4g_A ATP synthase subunit S, 98.0 2.4E-06 8.3E-11 77.4 4.0 95 82-176 52-154 (176)
153 4gt6_A Cell surface protein; l 98.0 0.00071 2.4E-08 70.0 21.6 77 66-146 85-168 (394)
154 4gt6_A Cell surface protein; l 97.9 0.0012 4.1E-08 68.2 21.3 275 14-323 61-367 (394)
155 1io0_A Tropomodulin; LRR prote 97.8 9.1E-06 3.1E-10 74.9 3.1 118 197-323 28-161 (185)
156 1io0_A Tropomodulin; LRR prote 97.6 1.5E-05 5.1E-10 73.4 1.4 117 178-303 32-164 (185)
157 4h09_A Hypothetical leucine ri 97.5 0.013 4.4E-07 59.9 22.0 247 46-321 46-318 (379)
158 4h09_A Hypothetical leucine ri 97.4 0.033 1.1E-06 56.8 24.2 279 14-330 44-348 (379)
159 3rw6_A Nuclear RNA export fact 97.3 9.8E-05 3.3E-09 71.8 3.4 93 73-167 148-257 (267)
160 3rw6_A Nuclear RNA export fact 97.1 0.00032 1.1E-08 68.2 4.0 79 66-145 168-258 (267)
161 3rfe_A Platelet glycoprotein I 95.5 0.017 5.9E-07 49.3 5.7 52 50-102 12-66 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.4 0.013 4.5E-07 53.8 4.8 107 201-321 37-165 (197)
163 3rfe_A Platelet glycoprotein I 94.0 0.062 2.1E-06 45.8 5.3 50 272-323 13-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.0 0.026 8.9E-07 51.8 3.0 112 180-302 39-169 (197)
165 2lz0_A Uncharacterized protein 25.2 70 0.0024 25.1 4.0 37 87-123 16-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.8e-31 Score=300.55 Aligned_cols=332 Identities=21% Similarity=0.265 Sum_probs=233.3
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-CCCCCC-CCCCceEEEccCCChh-hhccc-ccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-SLPSKN-IPEHLVSLEMPHSNIE-QLWNG-VQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~l~-~l~~~-~~~ 89 (583)
.+++|+.|++++|. ....+|..+....++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|.. +..
T Consensus 267 ~l~~L~~L~L~~n~-----l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~ 341 (768)
T 3rgz_A 267 PLKSLQYLSLAENK-----FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341 (768)
T ss_dssp CCTTCCEEECCSSE-----EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred ccCCCCEEECcCCc-----cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc
Confidence 46667777776663 233555555544346666666666654 444444 5566666666666655 45443 555
Q ss_pred CCCccEEeccCCCCCCCCC--------------------------CCCC--CCCcCEEeeeCCCCchhhhhhccCCCCCC
Q 036772 90 LAALKRLNLSYCKQLSRIP--------------------------DLSL--ALNLEWLDLVGCASLIEIHSSIQHLNKLV 141 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p--------------------------~l~~--l~~L~~L~L~~~~~l~~~~~~i~~l~~L~ 141 (583)
+++|++|++++|.....+| .+.. +++|++|++++|.....+|..++.+++|+
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 5566666665554432222 2222 55677777777766667777788888888
Q ss_pred EEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccccc---CCCcCEEeccCCCCc-cccccccCCCCccEEeeeCCC
Q 036772 142 FLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEI---SCNIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCS 216 (583)
Q Consensus 142 ~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~ 216 (583)
.|++++|...+.+|..+ .+++|++|++++|.....+|.. ..+|+.|++++|.++ .+|..++.+++|++|++++|.
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 88888865555667666 7888888888887765555543 467888888888887 567778888888888888888
Q ss_pred CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccc------------------------------
Q 036772 217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS------------------------------ 266 (583)
Q Consensus 217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~------------------------------ 266 (583)
....+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|.+.
T Consensus 502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (768)
T 3rgz_A 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence 87788888888888888888888877788888888888888888887654
Q ss_pred --------------------------------------------------cCccEEEeccCCCcc-cCccCCCCCCCCEE
Q 036772 267 --------------------------------------------------QNLVDMSLVDCGITE-LPESLGRSPSLKFL 295 (583)
Q Consensus 267 --------------------------------------------------~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L 295 (583)
..|+.|++++|.+++ +|..++.+++|+.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 125678888888875 77788888888888
Q ss_pred EccCCCCc-ccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCcccccccccccc
Q 036772 296 NLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELW 363 (583)
Q Consensus 296 ~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~ 363 (583)
+|++|.++ .+|..++.+++|+.|+|++|+--..+| ..+..++.|+.+.++.|.+.
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-------------~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-------------QAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-------------GGGGGCCCCSEEECCSSEEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-------------hHHhCCCCCCEEECcCCccc
Confidence 88888887 778888888888888888875444555 45666777777776666543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.2e-30 Score=286.47 Aligned_cols=282 Identities=17% Similarity=0.154 Sum_probs=185.2
Q ss_pred cCCcccccCCCccEEEecCCCCCC------------------CCCCCC---CCCceEEEccCCChh-hhcccccCCCCcc
Q 036772 37 HSRCLESFFNELRYFQWDGYPLKS------------------LPSKNI---PEHLVSLEMPHSNIE-QLWNGVQNLAALK 94 (583)
Q Consensus 37 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~~~l~-~l~~~~~~l~~L~ 94 (583)
+|..+..+ ++|++|++++|.++. +|..+. +++|++|++++|.+. .+|..+.++++|+
T Consensus 198 ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 55566666 367777777777666 666543 667777777776654 4566667777777
Q ss_pred EEeccCCC-CCC-CCC-CCCCC------CCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCcC-CCCC
Q 036772 95 RLNLSYCK-QLS-RIP-DLSLA------LNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTGI-NLDS 162 (583)
Q Consensus 95 ~L~Ls~~~-~l~-~~p-~l~~l------~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 162 (583)
+|+|++|+ ... .+| .++.+ ++|++|++++|... .+|. .++.+++|+.|++++|...+.+| .+ .+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 77777775 332 344 24333 67777777776544 6666 67777777777777644333666 44 6677
Q ss_pred ccEEEecCCCCcccccccC---CC-cCEEeccCCCCccccccccCCC--CccEEeeeCCCCCcccccccc-------CCC
Q 036772 163 LKVLYLGGCSNLKRFLEIS---CN-IENLDLSETAIEELPSSIGNLS--RLVRLDLTNCSRLKSVSNSLC-------NLK 229 (583)
Q Consensus 163 L~~L~L~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l~ 229 (583)
|++|++++|. +..+|..+ .+ |+.|++++|.++.+|..+..++ +|+.|++++|......|..+. .++
T Consensus 355 L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 7777777653 33444332 34 7777777777777776665544 677777777776666666666 666
Q ss_pred CCcEEEccCCCCCCccccc-cCCCCcccEEEccCCcccc-----------------CccEEEeccCCCcccCccCC--CC
Q 036772 230 SLQYLFLSGCLKLEKLPEE-IGNLESLKIMLANETAISQ-----------------NLVDMSLVDCGITELPESLG--RS 289 (583)
Q Consensus 230 ~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~-----------------~L~~L~L~~~~l~~lp~~l~--~l 289 (583)
+|++|++++|... .+|.. +..+++|+.|++++|.+.. .|+.|++++|.++.+|..+. .+
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l 512 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL 512 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence 7777777776554 44443 4457777777777766541 46777777777777777665 77
Q ss_pred CCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus 513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence 7777777777777777777777777777777543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.1e-29 Score=289.39 Aligned_cols=284 Identities=22% Similarity=0.264 Sum_probs=202.2
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChh-hhcccccCC-CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNGVQNL-AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~l-~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
+|++|++++|.+....+...+++|++|++++|.+. .+|..+... ++|++|+|++|.....+| .++.+++|++|++++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 327 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327 (768)
T ss_dssp SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence 44444444444332222224445555555555554 444444433 666666666665554444 356666666666666
Q ss_pred CCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC-CCC-CccEEEecCCCCccccccc-----CCCcCEEeccCCCCc
Q 036772 124 CASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI-NLD-SLKVLYLGGCSNLKRFLEI-----SCNIENLDLSETAIE 195 (583)
Q Consensus 124 ~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~-~L~~L~L~~c~~l~~~~~~-----~~~L~~L~L~~~~i~ 195 (583)
|.....+|.. ++.+++|++|++++|.....+|..+ .++ +|++|++++|.....+|.. ..+|+.|++++|.++
T Consensus 328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 407 (768)
T 3rgz_A 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407 (768)
T ss_dssp SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence 6554455543 6666666666666654333555555 444 6777777666544333433 346888888888887
Q ss_pred -cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC------
Q 036772 196 -ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN------ 268 (583)
Q Consensus 196 -~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~------ 268 (583)
.+|..++.+++|+.|++++|.....+|..+.++++|++|++++|...+.+|..+..+++|+.|++++|.+...
T Consensus 408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 6788899999999999999988778888999999999999999988888999999999999999999887642
Q ss_pred ----ccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772 269 ----LVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 269 ----L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
|+.|++++|.+++ +|.+++.+++|++|+|++|.++ .+|..++.+++|+.|++++|+-...+|
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 8999999999985 8889999999999999999998 889999999999999999987655666
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.3e-28 Score=271.15 Aligned_cols=305 Identities=21% Similarity=0.204 Sum_probs=197.7
Q ss_pred cCCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-ccccc
Q 036772 12 MFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQ 88 (583)
Q Consensus 12 ~~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~ 88 (583)
+.++++||.|++++|. .....|..+..+ ++|++|++++|.+..+++ .+ .+++|++|++++|.++.+ +..+.
T Consensus 53 ~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQ-----IYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp STTCTTCSEEECTTCC-----CCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hccCccceEEECCCCc-----cceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 3488999999998885 334457778888 589999999999887744 45 789999999999999987 56689
Q ss_pred CCCCccEEeccCCCCCC-CCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCC--EEEccCCCCCCcCCCcCCCCCccE
Q 036772 89 NLAALKRLNLSYCKQLS-RIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLV--FLNLGRCISLKSLPTGINLDSLKV 165 (583)
Q Consensus 89 ~l~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~L~~c~~l~~lp~~~~l~~L~~ 165 (583)
++++|++|++++|.... ..|.+..+++|++|++++|......+..++.+++|+ .|++++|......|..+...+|++
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 99999999999997666 446677799999999999877666678889999999 899998654444444446677777
Q ss_pred EEecCCCCccccccc-----------------------------C--CCcCEEeccCCCCcccccc-ccCCCCccEEeee
Q 036772 166 LYLGGCSNLKRFLEI-----------------------------S--CNIENLDLSETAIEELPSS-IGNLSRLVRLDLT 213 (583)
Q Consensus 166 L~L~~c~~l~~~~~~-----------------------------~--~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~ 213 (583)
|++++|..+...+.. . .+++.|++++|.++.++.. ++.+++|++|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 777776522111100 0 0345555555555555443 5555555555555
Q ss_pred CCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-----------CccEEEeccCCCccc
Q 036772 214 NCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-----------NLVDMSLVDCGITEL 282 (583)
Q Consensus 214 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~~l~~l 282 (583)
+|.. ..+|..+.++++|++|++++|......|..+..+++|+.|++++|.+.. .|+.|++++|.+.++
T Consensus 287 ~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 287 ATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp TSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 5533 2455555555555555555554444444455555555555555554331 155555555555543
Q ss_pred ---CccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772 283 ---PESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 283 ---p~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 323 (583)
+..++.+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 44455555555555555555533 334555555555555555
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.4e-29 Score=277.57 Aligned_cols=315 Identities=17% Similarity=0.181 Sum_probs=261.6
Q ss_pred ceEEEEEecCCCCCcceEEEecCCCCCCcccee-----------------cCCccc--ccCCCccEEEecCCCC-CCCCC
Q 036772 4 AIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVR-----------------HSRCLE--SFFNELRYFQWDGYPL-KSLPS 63 (583)
Q Consensus 4 ~ve~i~ld~~~m~~Lr~L~l~~~~~~~~~~~~~-----------------l~~~l~--~l~~~Lr~L~l~~~~l-~~lp~ 63 (583)
.+.||.-.+.++++|+.|++++|.+ ... +|..+. .+ ++|++|++++|.+ ..+|.
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l-----~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPF-----VAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCC-----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCT
T ss_pred CCccCCHHHhcccCCCEEECcCCcc-----ccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChH
Confidence 5667655567999999999999964 221 899888 88 5999999999985 56887
Q ss_pred CC-CCCCceEEEccCCC-hhh--hcccccCC------CCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhh
Q 036772 64 KN-IPEHLVSLEMPHSN-IEQ--LWNGVQNL------AALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEI 130 (583)
Q Consensus 64 ~~-~~~~L~~L~L~~~~-l~~--l~~~~~~l------~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~ 130 (583)
.+ .+++|++|++++|+ ++. +|..+..+ ++|++|+|++|... .+|. ++.+++|++|++++|.....+
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 76 89999999999998 874 88877665 99999999999877 7776 899999999999998877688
Q ss_pred hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCC-ccEEEecCCCCcccccccCC-----CcCEEeccCCCCcc-cccccc
Q 036772 131 HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDS-LKVLYLGGCSNLKRFLEISC-----NIENLDLSETAIEE-LPSSIG 202 (583)
Q Consensus 131 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~-lp~~i~ 202 (583)
| .++.+++|+.|++++| .+..+|..+ .+++ |++|++++|. +..+|..+. +|+.|++++|.++. +|..+.
T Consensus 347 p-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 347 P-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp C-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred h-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 8 8999999999999985 566899888 8888 9999999976 447776543 68899999999985 566677
Q ss_pred -------CCCCccEEeeeCCCCCcccccc-ccCCCCCcEEEccCCCCCCccccccCC--------CCcccEEEccCCccc
Q 036772 203 -------NLSRLVRLDLTNCSRLKSVSNS-LCNLKSLQYLFLSGCLKLEKLPEEIGN--------LESLKIMLANETAIS 266 (583)
Q Consensus 203 -------~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~l~~--------l~~L~~L~l~~~~i~ 266 (583)
.+++|++|++++|... .+|.. +..+++|++|++++|... .+|..... +++|+.|++++|.+.
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence 7889999999998776 56654 456899999999998765 66654332 339999999998765
Q ss_pred c-----------CccEEEeccCCCcccCccCCCCCCCCEEEcc------CCCCc-ccChhhhccCccccccccccccccc
Q 036772 267 Q-----------NLVDMSLVDCGITELPESLGRSPSLKFLNLA------ENDFE-KIPSSIKQLSNLLFLTLQNCKRLQS 328 (583)
Q Consensus 267 ~-----------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 328 (583)
. .|+.|++++|.++++|..+..+++|+.|+|+ +|.+. .+|..+..+++|+.|++++|. +++
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ 580 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK 580 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCB
T ss_pred ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCc
Confidence 3 2899999999999999999999999999995 45554 889999999999999999985 488
Q ss_pred CCC
Q 036772 329 LPE 331 (583)
Q Consensus 329 lp~ 331 (583)
+|.
T Consensus 581 ip~ 583 (636)
T 4eco_A 581 VNE 583 (636)
T ss_dssp CCS
T ss_pred cCH
Confidence 874
No 6
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=268.69 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=136.7
Q ss_pred CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC--ccccccCCCCcccEEEc
Q 036772 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE--KLPEEIGNLESLKIMLA 260 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l 260 (583)
+|+.|+++++.+..++. ...+++|++|++++|......|..+.++++|++|++++|...+ .+|..+..+++|+.|++
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 46667777766655442 2688999999999998888788899999999999999987765 66778999999999999
Q ss_pred cCCcccc-----------CccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccccccc
Q 036772 261 NETAISQ-----------NLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS 328 (583)
Q Consensus 261 ~~~~i~~-----------~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~ 328 (583)
++|.+.. .|+.|++++|.+++ +|..+. ++|+.|++++|.++.+|..+..+++|+.|++++| +++.
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCc
Confidence 9998875 28999999999866 555554 7999999999999999999999999999999998 5677
Q ss_pred CCCCCCCCeeeeeCCcCcccccCcccccccccccce
Q 036772 329 LPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQ 364 (583)
Q Consensus 329 lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~ 364 (583)
+|. ..+..+++|+.+.+.+|++.+
T Consensus 459 l~~------------~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 459 VPD------------GIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCT------------TTTTTCTTCCEEECCSSCBCC
T ss_pred cCH------------HHhccCCcccEEECcCCCCcc
Confidence 663 136667788888888888754
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4e-28 Score=276.30 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=217.5
Q ss_pred cCCcccccCCCccEEEecCCCCCC------------------CCCCC---CCCCceEEEccCCChh-hhcccccCCCCcc
Q 036772 37 HSRCLESFFNELRYFQWDGYPLKS------------------LPSKN---IPEHLVSLEMPHSNIE-QLWNGVQNLAALK 94 (583)
Q Consensus 37 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~ 94 (583)
+|..+..+ ++|++|++++|.++. +|..+ .+++|++|++++|.+. .+|..+.++++|+
T Consensus 440 IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 67777777 488888888888887 88775 5888888888888754 6777788888888
Q ss_pred EEeccCCC-CCC-CCC--------CCCCCCCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCcC-CCC
Q 036772 95 RLNLSYCK-QLS-RIP--------DLSLALNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTGI-NLD 161 (583)
Q Consensus 95 ~L~Ls~~~-~l~-~~p--------~l~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~ 161 (583)
.|+|++|+ ... .+| .+..+++|++|+|++|... .+|. .++.+++|+.|+|++| .+..+| .+ .++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCC
Confidence 88888887 333 344 2344568888888887765 7777 8888888888888885 455888 45 788
Q ss_pred CccEEEecCCCCcccccccC---CC-cCEEeccCCCCccccccccCCCC--ccEEeeeCCCCCccccc---ccc--CCCC
Q 036772 162 SLKVLYLGGCSNLKRFLEIS---CN-IENLDLSETAIEELPSSIGNLSR--LVRLDLTNCSRLKSVSN---SLC--NLKS 230 (583)
Q Consensus 162 ~L~~L~L~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~l~--~l~~ 230 (583)
+|+.|++++|..- .+|..+ .+ |+.|++++|.++.+|..+..++. |+.|++++|.....+|. .+. .+++
T Consensus 596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 8888888886543 666443 45 88888888888888887776654 88888888877655443 222 3457
Q ss_pred CcEEEccCCCCCCcccccc-CCCCcccEEEccCCcccc-----------------CccEEEeccCCCcccCccCC--CCC
Q 036772 231 LQYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQ-----------------NLVDMSLVDCGITELPESLG--RSP 290 (583)
Q Consensus 231 L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~i~~-----------------~L~~L~L~~~~l~~lp~~l~--~l~ 290 (583)
|+.|++++|... .+|..+ ..+++|+.|++++|.+.. .|+.|+|++|.++.+|..+. .++
T Consensus 675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 888999887655 566654 478889999998877542 47889999999888888887 889
Q ss_pred CCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772 291 SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 291 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 324 (583)
+|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence 9999999999998888888899999999987743
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.7e-28 Score=268.01 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhhhc-ccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQLW-NGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l 90 (583)
++++||.|++++|. .....|..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|.+..++ ..+.++
T Consensus 54 ~l~~L~~L~Ls~n~-----l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 54 NFSELQWLDLSRCE-----IETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp TCTTCCEEECTTCC-----CCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred CCccCcEEeCCCCc-----ccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCC
Confidence 67777777777664 222234556666 4777777777777766 4444 6677777777777776665 446677
Q ss_pred CCccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCC
Q 036772 91 AALKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCA 125 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~ 125 (583)
++|++|++++|.... .+| .++.+++|++|++++|.
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 777777777775543 334 36666666666666654
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=5.1e-28 Score=268.39 Aligned_cols=301 Identities=22% Similarity=0.183 Sum_probs=196.7
Q ss_pred CCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChh--hhccccc
Q 036772 13 FRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIE--QLWNGVQ 88 (583)
Q Consensus 13 ~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~--~l~~~~~ 88 (583)
.++++||+|++++|. .....|..+..+ .+|++|++++|.++.+|. .+ .+++|++|++++|.+. .+|..+.
T Consensus 77 ~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~ 150 (606)
T 3vq2_A 77 HGLHHLSNLILTGNP-----IQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150 (606)
T ss_dssp TTCTTCCEEECTTCC-----CCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred hchhhcCEeECCCCc-----ccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh
Confidence 489999999999885 233347788888 589999999999998884 34 8899999999999998 4788899
Q ss_pred CCCCccEEeccCCCCCCCCCC-CC---------------------------CCCCcCEEeeeCCCCc-------------
Q 036772 89 NLAALKRLNLSYCKQLSRIPD-LS---------------------------LALNLEWLDLVGCASL------------- 127 (583)
Q Consensus 89 ~l~~L~~L~Ls~~~~l~~~p~-l~---------------------------~l~~L~~L~L~~~~~l------------- 127 (583)
++++|++|++++|......+. ++ ...+|++|++++|...
T Consensus 151 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence 999999999998865433221 11 1125566666655332
Q ss_pred -------------------------------------------------------------------hhhhhhccCCCCC
Q 036772 128 -------------------------------------------------------------------IEIHSSIQHLNKL 140 (583)
Q Consensus 128 -------------------------------------------------------------------~~~~~~i~~l~~L 140 (583)
..+| .+..+++|
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L 309 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKW 309 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCC
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccC
Confidence 1122 45566788
Q ss_pred CEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc-ccCCCcCEEeccCCCCccc---cccccCCCCccEEeeeCCC
Q 036772 141 VFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL-EISCNIENLDLSETAIEEL---PSSIGNLSRLVRLDLTNCS 216 (583)
Q Consensus 141 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~ 216 (583)
+.|++++|.. +.+|.. .+++|++|++++|..+..++ ...++|+.|++++|.++.+ |..+..+++|++|++++|.
T Consensus 310 ~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 387 (606)
T 3vq2_A 310 QSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387 (606)
T ss_dssp SEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred CEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence 8888988655 888854 88888888888875544332 2345666677776666654 4556666666666666654
Q ss_pred CCccccccccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccC----------ccEEEeccCCCcc--cC
Q 036772 217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITE--LP 283 (583)
Q Consensus 217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~--lp 283 (583)
. ..+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+... |+.|++++|.+.+ +|
T Consensus 388 l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 388 A-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp E-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred c-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH
Confidence 2 3345556666666666666655544444 4555666666666666554331 5666666666554 45
Q ss_pred ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772 284 ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 284 ~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 323 (583)
..++.+++|+.|++++|.++.+ |..++.+++|+.|++++|
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 5566666666666666665543 344556666666666665
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6.1e-28 Score=274.79 Aligned_cols=319 Identities=19% Similarity=0.205 Sum_probs=255.9
Q ss_pred ceEEEEEecCCCCCcceEEEecCCCCCCc------------cceecCCccc--ccCCCccEEEecCCC-CCCCCCCC-CC
Q 036772 4 AIEGISLDMFRMRRLRFFKFYNSFPEMNK------------CKVRHSRCLE--SFFNELRYFQWDGYP-LKSLPSKN-IP 67 (583)
Q Consensus 4 ~ve~i~ld~~~m~~Lr~L~l~~~~~~~~~------------~~~~l~~~l~--~l~~~Lr~L~l~~~~-l~~lp~~~-~~ 67 (583)
.+.+|.-.+.+|++|+.|++++|.+.... ....+|..+. .+ ++|++|++++|. ...+|..+ .+
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCC
Confidence 45666555679999999999999641100 0003888876 88 599999999998 56788766 89
Q ss_pred CCceEEEccCCC-hhh--hcccccCC-------CCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhhhhhc
Q 036772 68 EHLVSLEMPHSN-IEQ--LWNGVQNL-------AALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEIHSSI 134 (583)
Q Consensus 68 ~~L~~L~L~~~~-l~~--l~~~~~~l-------~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~~~~i 134 (583)
++|++|++++|+ ++. +|..+..+ ++|+.|+|++|... .+|. ++.+++|++|+|++|... .+| .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence 999999999998 774 77655544 59999999999877 7776 899999999999998765 788 89
Q ss_pred cCCCCCCEEEccCCCCCCcCCCcC-CCCC-ccEEEecCCCCcccccccCC-----CcCEEeccCCCCccccc----ccc-
Q 036772 135 QHLNKLVFLNLGRCISLKSLPTGI-NLDS-LKVLYLGGCSNLKRFLEISC-----NIENLDLSETAIEELPS----SIG- 202 (583)
Q Consensus 135 ~~l~~L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~lp~----~i~- 202 (583)
+.+++|+.|+|++| .+..+|..+ .+++ |++|++++|. +..+|..+. +|+.|++++|.+...++ .+.
T Consensus 592 ~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99999999999995 466899878 7888 9999999976 447776543 38899999999875433 233
Q ss_pred -CCCCccEEeeeCCCCCccccccc-cCCCCCcEEEccCCCCCCccccccCC--------CCcccEEEccCCcccc-----
Q 036772 203 -NLSRLVRLDLTNCSRLKSVSNSL-CNLKSLQYLFLSGCLKLEKLPEEIGN--------LESLKIMLANETAISQ----- 267 (583)
Q Consensus 203 -~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~l~~--------l~~L~~L~l~~~~i~~----- 267 (583)
.+++|+.|++++|... .+|..+ ..+++|+.|++++|... .+|..+.. +++|+.|++++|.+..
T Consensus 670 ~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l 747 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747 (876)
T ss_dssp CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence 4458999999998766 666655 48999999999998654 67765443 3499999999987653
Q ss_pred ------CccEEEeccCCCcccCccCCCCCCCCEEEccC------CCCc-ccChhhhccCcccccccccccccccCCC
Q 036772 268 ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAE------NDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE 331 (583)
Q Consensus 268 ------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 331 (583)
.|+.|+|++|.++++|..+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|. +..+|.
T Consensus 748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~ 823 (876)
T 4ecn_A 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDE 823 (876)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCS
T ss_pred hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCH
Confidence 28899999999999999999999999999977 5554 889999999999999999995 488874
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.2e-28 Score=261.80 Aligned_cols=298 Identities=16% Similarity=0.199 Sum_probs=195.0
Q ss_pred CCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAA 92 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~ 92 (583)
++|+.|++++|.+ ..+ |..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|+++.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYI------SELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCC------CCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEECCCCcc------cccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 4677777766642 222 2455555 3677777777776666 3333 566777777777777766665 6677
Q ss_pred ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCC--CEEEccCCCC--CCcCCCcC--------
Q 036772 93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKL--VFLNLGRCIS--LKSLPTGI-------- 158 (583)
Q Consensus 93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~-------- 158 (583)
|++|+|++|.... .+| .++.+++|++|++++|.... ..++.+++| +.|++++|.. ....|..+
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 7777777776554 244 46667777777777665433 234455555 6666666543 22222222
Q ss_pred -------------------CCCCccEEEecCCC------------------------------Ccc----cccc--cCCC
Q 036772 159 -------------------NLDSLKVLYLGGCS------------------------------NLK----RFLE--ISCN 183 (583)
Q Consensus 159 -------------------~l~~L~~L~L~~c~------------------------------~l~----~~~~--~~~~ 183 (583)
.+++|+.|++++|. ... .++. ...+
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 24555555555543 000 0000 0236
Q ss_pred cCEEeccCCCCc-cccccc-----cCCCCccEEeee--------------------------CCCCCccccccccCCCCC
Q 036772 184 IENLDLSETAIE-ELPSSI-----GNLSRLVRLDLT--------------------------NCSRLKSVSNSLCNLKSL 231 (583)
Q Consensus 184 L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~--------------------------~~~~l~~lp~~l~~l~~L 231 (583)
|+.|++++|.++ .+|..+ +.+++|+.++++ +|..... + ....+++|
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L 326 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPF 326 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcc
Confidence 777777777776 667666 555555555544 4432211 1 12678999
Q ss_pred cEEEccCCCCCCccccccCCCCcccEEEccCCcccc------------CccEEEeccCCCcc-cCcc-CCCCCCCCEEEc
Q 036772 232 QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------------NLVDMSLVDCGITE-LPES-LGRSPSLKFLNL 297 (583)
Q Consensus 232 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~~~l~~-lp~~-l~~l~~L~~L~L 297 (583)
++|++++|...+..|..++.+++|+.|++++|.+.. .|+.|++++|.+.+ +|.. +..+++|++|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 999999998888889999999999999999998874 29999999999998 8864 788999999999
Q ss_pred cCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772 298 AENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 298 s~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
++|.++ .+|..+. ++|+.|++++| +++++|
T Consensus 407 s~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip 437 (520)
T 2z7x_B 407 SSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIP 437 (520)
T ss_dssp CSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCC
T ss_pred cCCCCCcchhhhhc--ccCCEEECCCC-cccccc
Confidence 999986 5555443 68999999998 566766
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=4.4e-28 Score=265.62 Aligned_cols=115 Identities=18% Similarity=0.140 Sum_probs=57.6
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhh--cccccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL--WNGVQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l--~~~~~~ 89 (583)
++++||+|++++|. .....|..+..+ .+|++|++++|.++.+|+. + .+++|++|++++|.++.+ +..+.+
T Consensus 48 ~l~~L~~L~Ls~n~-----i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 48 ACANLQVLILKSSR-----INTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SCTTCCEEECTTSC-----CCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred cCCcccEEECCCCC-----cCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 55555555555553 122223444444 3555555555555555543 2 455555555555555532 344555
Q ss_pred CCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhc
Q 036772 90 LAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSI 134 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i 134 (583)
+++|++|++++|.....+| .+..+++|++|++++|......|..+
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 5555555555555444433 35555555555555554443333333
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=3.3e-27 Score=243.31 Aligned_cols=291 Identities=19% Similarity=0.246 Sum_probs=186.9
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL 93 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L 93 (583)
.+++|+.|+++++. ...++ ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|
T Consensus 42 ~l~~L~~L~l~~~~------i~~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 42 ELESITKLVVAGEK------VASIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNL 112 (347)
T ss_dssp HHTTCSEEECCSSC------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred hcccccEEEEeCCc------cccch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence 66778888887763 23333 36666 478888888888877777447778888888888777764 47778888
Q ss_pred cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772 94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN 173 (583)
Q Consensus 94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 173 (583)
++|++++|.. ..++.+..+++|++|++++|.....++. +..+++|+.|++++| .+..++....+++|++|++++|..
T Consensus 113 ~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 113 RELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQI 189 (347)
T ss_dssp SEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSCC
T ss_pred CEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCcc
Confidence 8888887754 3445577778888888888765555443 777888888888775 344444422677888888877642
Q ss_pred ccccc--ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772 174 LKRFL--EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN 251 (583)
Q Consensus 174 l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~ 251 (583)
..++ ....+|+.|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|++|++++|.... + +.+..
T Consensus 190 -~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~ 263 (347)
T 4fmz_A 190 -EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKD 263 (347)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTT
T ss_pred -cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhc
Confidence 2222 345677778888877777665 7777788888887776543 333 6777788888887765433 3 34667
Q ss_pred CCcccEEEccCCccccC--------ccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCcccChhhhccCccccccccc
Q 036772 252 LESLKIMLANETAISQN--------LVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN 322 (583)
Q Consensus 252 l~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 322 (583)
+++|+.|++++|.+... |+.|++++|.+++. |..++.+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN 342 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred CCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence 77777777777665432 45555555554442 2334445555555555555554443 44455555555554
Q ss_pred c
Q 036772 323 C 323 (583)
Q Consensus 323 c 323 (583)
|
T Consensus 343 N 343 (347)
T 4fmz_A 343 Q 343 (347)
T ss_dssp C
T ss_pred h
Confidence 4
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.2e-27 Score=255.94 Aligned_cols=311 Identities=17% Similarity=0.189 Sum_probs=172.6
Q ss_pred CCcccccCCCccEEEecCCCCC-CCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCC-C--C
Q 036772 38 SRCLESFFNELRYFQWDGYPLK-SLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIP-D--L 110 (583)
Q Consensus 38 ~~~l~~l~~~Lr~L~l~~~~l~-~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~--l 110 (583)
|..+..+ ++|++|++++|.+. .++. .+ .+++|++|++++|.+..+ +..+.++++|++|+|++|......+ . +
T Consensus 47 ~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 125 (455)
T 3v47_A 47 ETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125 (455)
T ss_dssp TTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred hhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence 3444444 24555555555443 2322 22 445555555555555443 3344555555555555554332222 1 4
Q ss_pred CCCCCcCEEeeeCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccccc--------
Q 036772 111 SLALNLEWLDLVGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFL-------- 178 (583)
Q Consensus 111 ~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~-------- 178 (583)
..+++|++|++++|......|.. ++.+++|++|++++|......|..+ ...+|+.|++++|......+
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 205 (455)
T 3v47_A 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205 (455)
T ss_dssp TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence 44555555555554433333332 4445555555555433222222222 12445555555433211100
Q ss_pred ---ccCCCcCEEeccCCCCcc-cccccc---CCCCccEEeeeCCCCCccc----------ccccc--CCCCCcEEEccCC
Q 036772 179 ---EISCNIENLDLSETAIEE-LPSSIG---NLSRLVRLDLTNCSRLKSV----------SNSLC--NLKSLQYLFLSGC 239 (583)
Q Consensus 179 ---~~~~~L~~L~L~~~~i~~-lp~~i~---~l~~L~~L~L~~~~~l~~l----------p~~l~--~l~~L~~L~l~~c 239 (583)
....+|+.|++++|.++. .|..+. ..++|+.|++++|...... +..+. ..++|++|++++|
T Consensus 206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n 285 (455)
T 3v47_A 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS 285 (455)
T ss_dssp CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence 011345556666655542 222221 1245555555554322210 00111 2357888888888
Q ss_pred CCCCccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCccc-Ch
Q 036772 240 LKLEKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKI-PS 307 (583)
Q Consensus 240 ~~l~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~ 307 (583)
...+..|..++.+++|+.|++++|.+... |+.|++++|.++++ |..++.+++|++|+|++|.++.+ |.
T Consensus 286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence 77777788888888888888888876532 88888888888886 56788899999999999998866 66
Q ss_pred hhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772 308 SIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 308 ~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~ 362 (583)
.+..+++|+.|++++| +++.+|. ..+..+++|+.+.+.+|++
T Consensus 366 ~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 366 SFLGLPNLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSCB
T ss_pred hccccccccEEECCCC-ccccCCH------------hHhccCCcccEEEccCCCc
Confidence 7888999999999987 5566552 2345666777777766654
No 15
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.4e-27 Score=262.61 Aligned_cols=321 Identities=19% Similarity=0.209 Sum_probs=219.6
Q ss_pred CCcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNGVQNLAA 92 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~ 92 (583)
++|+.|++++|. ...++ ..+..+ ++|++|++++|.++.+++ .| .+++|++|++++|.++.+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~------i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNS------ISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSC------CCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCcCEEECCCCC------ccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 467777777764 22333 456666 367777777777776643 34 567777777777777777665 6777
Q ss_pred ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCC--CEEEccCCCC--CCcCCCcC-C------
Q 036772 93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKL--VFLNLGRCIS--LKSLPTGI-N------ 159 (583)
Q Consensus 93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~-~------ 159 (583)
|++|+|++|+... ..| .++.+++|++|++++|..... .+..+++| +.|++++|.. ....|..+ .
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 7777777776544 222 466777777777777654332 23333344 6666666433 12222211 1
Q ss_pred --------------------C-------------------------------------------------------CCcc
Q 036772 160 --------------------L-------------------------------------------------------DSLK 164 (583)
Q Consensus 160 --------------------l-------------------------------------------------------~~L~ 164 (583)
+ ++|+
T Consensus 200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~ 279 (562)
T 3a79_B 200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE 279 (562)
T ss_dssp EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence 1 1455
Q ss_pred EEEecCCCCcccccccC----------------------------------CCcCEEeccCCCCccccccccCCCCccEE
Q 036772 165 VLYLGGCSNLKRFLEIS----------------------------------CNIENLDLSETAIEELPSSIGNLSRLVRL 210 (583)
Q Consensus 165 ~L~L~~c~~l~~~~~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 210 (583)
+|++++|.....+|... .+++.|+++++.+..++. .+.+++|++|
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L 358 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL 358 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence 55555543222333322 347777788777765442 2678899999
Q ss_pred eeeCCCCCccccccccCCCCCcEEEccCCCCCC--ccccccCCCCcccEEEccCCcccc-----------CccEEEeccC
Q 036772 211 DLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE--KLPEEIGNLESLKIMLANETAISQ-----------NLVDMSLVDC 277 (583)
Q Consensus 211 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~ 277 (583)
++++|......|..+.++++|++|++++|.... .+|..+..+++|+.|++++|.+.. .|+.|++++|
T Consensus 359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 999998887788889999999999999976543 445678899999999999988765 2889999999
Q ss_pred CCcc-cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccc
Q 036772 278 GITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLF 356 (583)
Q Consensus 278 ~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~ 356 (583)
.+++ +|..+. ++|+.|++++|.++.+|..+..+++|+.|++++| +++.+|. ..+..+++++.+.
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~ 503 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPD------------GVFDRLTSLQYIW 503 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCT------------TSTTTCTTCCCEE
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCH------------HHHhcCCCCCEEE
Confidence 9866 455443 7999999999999999998889999999999998 5667663 1366677788888
Q ss_pred ccccccce
Q 036772 357 TRSSELWQ 364 (583)
Q Consensus 357 ~~~~~~~~ 364 (583)
+.+|++.+
T Consensus 504 l~~N~~~c 511 (562)
T 3a79_B 504 LHDNPWDC 511 (562)
T ss_dssp CCSCCBCC
T ss_pred ecCCCcCC
Confidence 88888753
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.3e-27 Score=255.66 Aligned_cols=306 Identities=17% Similarity=0.161 Sum_probs=234.2
Q ss_pred CCCCCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhh-hccc--
Q 036772 13 FRMRRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQ-LWNG-- 86 (583)
Q Consensus 13 ~~m~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~-l~~~-- 86 (583)
.++++|+.|++++|. ....+ +..+..+ ++|++|++++|.+..+ |..+ .+++|++|++++|.++. ++..
T Consensus 51 ~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 51 SRLQDLQFLKVEQQT-----PGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp SSCTTCCEEECCCCS-----TTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred ccCccccEEECcCCc-----ccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccc
Confidence 389999999999885 23344 4567777 5999999999999887 5555 79999999999999985 4444
Q ss_pred ccCCCCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCchhhhhhccCC--CCCCEEEccCCCCCCcCCCc-----
Q 036772 87 VQNLAALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLIEIHSSIQHL--NKLVFLNLGRCISLKSLPTG----- 157 (583)
Q Consensus 87 ~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l--~~L~~L~L~~c~~l~~lp~~----- 157 (583)
+..+++|++|+|++|......|. +..+++|++|++++|......+..+..+ .+|+.|++++| .+..++..
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~ 203 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWE 203 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchhhcccc
Confidence 89999999999999988777675 8899999999999998777667777665 78999999885 44444432
Q ss_pred -----CCCCCccEEEecCCCCcccccccC------CCcCEEeccCCCCccccc-----------ccc--CCCCccEEeee
Q 036772 158 -----INLDSLKVLYLGGCSNLKRFLEIS------CNIENLDLSETAIEELPS-----------SIG--NLSRLVRLDLT 213 (583)
Q Consensus 158 -----~~l~~L~~L~L~~c~~l~~~~~~~------~~L~~L~L~~~~i~~lp~-----------~i~--~l~~L~~L~L~ 213 (583)
..+++|++|++++|......|..+ .+++.|+++++....... .+. ..++|+.|+++
T Consensus 204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence 156789999999986554444322 567777777664332110 111 23577788888
Q ss_pred CCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCccc-
Q 036772 214 NCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITEL- 282 (583)
Q Consensus 214 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~l- 282 (583)
+|......|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+... |+.|++++|.++++
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 7777666777777778888888887776666666777778888888887766432 77888888888885
Q ss_pred CccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccccc
Q 036772 283 PESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNCKR 325 (583)
Q Consensus 283 p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~ 325 (583)
|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+-
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 67899999999999999999988865 58899999999999853
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.7e-27 Score=260.64 Aligned_cols=277 Identities=19% Similarity=0.190 Sum_probs=143.7
Q ss_pred eEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC
Q 036772 71 VSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 71 ~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 148 (583)
++|++++|.+..++.. +..+++|++|++++|... .+| .+..+++|++|++++|......+..++.+++|+.|++++|
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence 3333333333333322 455555555555555433 333 3555555556665555544444445555555666666554
Q ss_pred CCCCcCCCc-C-CCCCccEEEecCCCCcccc-----cccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCcc
Q 036772 149 ISLKSLPTG-I-NLDSLKVLYLGGCSNLKRF-----LEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKS 220 (583)
Q Consensus 149 ~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~-----~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~ 220 (583)
.....+|.. + .+++|++|++++|...... ...+.+|+.|++++|.+..+ |..++.+++|+.|++++|.....
T Consensus 336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 444344443 2 5556666666554432211 12234555666666655544 33455556666666665554443
Q ss_pred ccc-cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-------------CccEEEeccCCCccc-Ccc
Q 036772 221 VSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-------------NLVDMSLVDCGITEL-PES 285 (583)
Q Consensus 221 lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-------------~L~~L~L~~~~l~~l-p~~ 285 (583)
.+. .+..+++|++|++++|......|..+..+++|+.|++++|.+.+ .|+.|++++|.++++ |..
T Consensus 416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 332 25556666666666655555555555566666666666655432 155666666666553 355
Q ss_pred CCCCCCCCEEEccCCCCcc-cChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772 286 LGRSPSLKFLNLAENDFEK-IPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~ 362 (583)
++.+++|++|+|++|.++. .|..+..+++| .|++++| +++.++ ...+..+++++.+.+.+|++
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~------------~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL------------PSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC------------GGGHHHHHTSSEEECTTCCE
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccC------------HhhcccCCCCCEEeCCCCCc
Confidence 5566666666666666553 34455555556 5666555 222222 12345556666666665554
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=6.5e-27 Score=257.28 Aligned_cols=299 Identities=16% Similarity=0.196 Sum_probs=220.1
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l 90 (583)
.+...+.++++++. ...+|.++ +++|++|++++|.++.+|+ .+ .+++|++|++++|.++.+ +..+..+
T Consensus 29 ~~~~~~~l~ls~~~------L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 99 (562)
T 3a79_B 29 SNELESMVDYSNRN------LTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99 (562)
T ss_dssp ----CCEEECTTSC------CCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred ccCCCcEEEcCCCC------CccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence 34455889998874 34567654 4689999999999999884 34 789999999999999987 4568999
Q ss_pred CCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCch-hhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCc--cEE
Q 036772 91 AALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSL--KVL 166 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L--~~L 166 (583)
++|++|+|++|... .+|.. .+++|++|++++|.... .+|..++++++|++|+++++ .+... .+ .+++| ++|
T Consensus 100 ~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~--~~~~l~~L~L~~L 174 (562)
T 3a79_B 100 QDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQL--DLLPVAHLHLSCI 174 (562)
T ss_dssp TTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTT--TTGGGTTSCEEEE
T ss_pred CCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccC--chhhhhhceeeEE
Confidence 99999999999754 66655 88999999999987654 34578999999999999985 34432 23 45555 999
Q ss_pred EecCCCC--ccccccc----------------------------------------------------------------
Q 036772 167 YLGGCSN--LKRFLEI---------------------------------------------------------------- 180 (583)
Q Consensus 167 ~L~~c~~--l~~~~~~---------------------------------------------------------------- 180 (583)
++++|.. ....|..
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9988754 1111100
Q ss_pred --------------------CCCcCEEeccCCCCc-cccccc-----cCCC--------------------------Ccc
Q 036772 181 --------------------SCNIENLDLSETAIE-ELPSSI-----GNLS--------------------------RLV 208 (583)
Q Consensus 181 --------------------~~~L~~L~L~~~~i~-~lp~~i-----~~l~--------------------------~L~ 208 (583)
..+|++|++++|.++ .+|..+ ..++ +|+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence 015666777777666 666654 3333 366
Q ss_pred EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------------CccEEEecc
Q 036772 209 RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------------NLVDMSLVD 276 (583)
Q Consensus 209 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~ 276 (583)
.|++++|...... ....+++|++|++++|...+..|..+..+++|+.|++++|.+.. .|+.|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 6666666542211 12678899999999998888888889999999999999988764 288999999
Q ss_pred CCCcc-cCc-cCCCCCCCCEEEccCCCCc-ccChhhhccCcccccccccccccccCCC
Q 036772 277 CGITE-LPE-SLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE 331 (583)
Q Consensus 277 ~~l~~-lp~-~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 331 (583)
|.+++ +|. .+..+++|++|++++|.++ .+|..+. ++|+.|++++| +++++|.
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~ 467 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK 467 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCT
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccCh
Confidence 99988 775 4788899999999999986 4444332 68999999998 6777763
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=5.9e-27 Score=245.61 Aligned_cols=305 Identities=19% Similarity=0.147 Sum_probs=244.1
Q ss_pred CCCCcceEEEecCCCCCCccceecCCc-ccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRC-LESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~ 89 (583)
.+.+||.|+++++ ....+|.. +..+ ++|++|+++++.++.++. .+ .+++|++|++++|.++.++.. +..
T Consensus 43 ~l~~l~~l~l~~~------~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 43 TLNNQKIVTFKNS------TMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GGCCCSEEEEESC------EESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCceEEEecCC------chhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence 6789999999987 45667776 4566 589999999999998876 34 789999999999999988654 899
Q ss_pred CCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEe
Q 036772 90 LAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL 168 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 168 (583)
+++|++|+|++|......+. +..+++|++|++++|......+..++.+++|+.|++++| .++.++. ..+++|+.|++
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~L~~L~l 193 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV 193 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCG-GGCTTCSEEEC
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCcccc-ccccccceeec
Confidence 99999999999965543334 688999999999998776666677999999999999984 5555542 26899999999
Q ss_pred cCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772 169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE 248 (583)
Q Consensus 169 ~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 248 (583)
++|. +..+ ....+|+.|++++|.++.+|.. ..++|+.|++++|..... ..+..+++|++|++++|...+..|..
T Consensus 194 ~~n~-l~~~-~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 194 SYNL-LSTL-AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSSC-CSEE-ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cccc-cccc-CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 9864 3333 2345899999999999988764 358999999999876543 57888999999999999877777888
Q ss_pred cCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccccccc
Q 036772 249 IGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS 328 (583)
Q Consensus 249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~ 328 (583)
+..+++|+.|++++|.+. ++|..+..+++|++|++++|.++.+|..+..+++|+.|++++|+ ++.
T Consensus 268 ~~~l~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~ 332 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVT 332 (390)
T ss_dssp GTTCSSCCEEECCSSCCC--------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCC
T ss_pred ccccccCCEEECCCCcCc--------------ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cce
Confidence 888888887777766644 46777788899999999999999999889999999999999984 444
Q ss_pred CCCCCCCCeeeeeCCcCcccccCcccccccccccc
Q 036772 329 LPELPCGSNIFARYCTSLETLSNLSTLFTRSSELW 363 (583)
Q Consensus 329 lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~ 363 (583)
++ +..+++|+.+.+.+|++.
T Consensus 333 ~~---------------~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 333 LK---------------LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC---------------CCTTCCCSEEECCSSCEE
T ss_pred eC---------------chhhccCCEEEcCCCCcc
Confidence 32 344566677777777763
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=260.13 Aligned_cols=121 Identities=27% Similarity=0.317 Sum_probs=72.9
Q ss_pred cCCCCccEEeeeCCCCCccc--cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-----------C
Q 036772 202 GNLSRLVRLDLTNCSRLKSV--SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-----------N 268 (583)
Q Consensus 202 ~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-----------~ 268 (583)
..+++|+.|++++|...... +..+..+++|++|++++|... .+|..+..+++|+.|++++|.+.. .
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 34556666666665543322 455666677777777766433 333336666667777666655432 1
Q ss_pred ccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc--ccChhhhccCcccccccccc
Q 036772 269 LVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 269 L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c 323 (583)
|+.|++++|.+.+ .|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 6666666666665 4455666666666666666665 46666666666666666666
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.2e-26 Score=237.18 Aligned_cols=294 Identities=20% Similarity=0.222 Sum_probs=241.3
Q ss_pred ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEe
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLD 120 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~ 120 (583)
+..+ ++|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|+
T Consensus 40 ~~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY 116 (347)
T ss_dssp HHHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred chhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEE
Confidence 3455 5899999999999999875589999999999999999877 9999999999999995 55678899999999999
Q ss_pred eeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccc-cccCCCcCEEeccCCCCccccc
Q 036772 121 LVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEELPS 199 (583)
Q Consensus 121 L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~-~~~~~~L~~L~L~~~~i~~lp~ 199 (583)
+++|... .++. +..+++|+.|++++|..+..++....+++|++|++++|...... .....+|+.|++++|.++.++.
T Consensus 117 l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 117 LNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG
T ss_pred CcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc
Confidence 9998754 4444 88999999999999888887776448999999999998643322 3456799999999999999887
Q ss_pred cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC--------ccE
Q 036772 200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN--------LVD 271 (583)
Q Consensus 200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~--------L~~ 271 (583)
+..+++|+.|++++|......+ +..+++|++|++++|.... ++. +..+++|+.|++++|.+... |+.
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKM 269 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred -ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence 8899999999999987655433 8889999999999986544 444 88999999999999887653 899
Q ss_pred EEeccCCCcccCccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCccccc
Q 036772 272 MSLVDCGITELPESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350 (583)
Q Consensus 272 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~ 350 (583)
|++++|.+++++ .+..+++|+.|++++|.++.. |..++.+++|+.|++++|+ ++.++ .+..++
T Consensus 270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~ 333 (347)
T 4fmz_A 270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLS 333 (347)
T ss_dssp EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCT
T ss_pred EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-ccccc--------------Chhhhh
Confidence 999999998874 578889999999999998844 5668889999999999984 44433 144555
Q ss_pred Cccccccccc
Q 036772 351 NLSTLFTRSS 360 (583)
Q Consensus 351 ~l~~l~~~~~ 360 (583)
+|+.+.+.+|
T Consensus 334 ~L~~L~l~~N 343 (347)
T 4fmz_A 334 KMDSADFANQ 343 (347)
T ss_dssp TCSEESSSCC
T ss_pred ccceeehhhh
Confidence 5666655444
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.3e-26 Score=247.05 Aligned_cols=293 Identities=20% Similarity=0.269 Sum_probs=210.5
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL 93 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L 93 (583)
.+++|+.|++.++. ...+| ++..+ ++|++|++++|.++.+|....+++|++|++++|.+..++. +.++++|
T Consensus 44 ~l~~l~~L~l~~~~------i~~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLG------IKSID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSC------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecCCCC------CccCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence 46788888888763 23444 46666 5899999999988888874478889999999998888776 8888999
Q ss_pred cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772 94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN 173 (583)
Q Consensus 94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 173 (583)
++|++++|. +..++.+..+++|++|++++|... .++ .++.+++|+.|++.+ .+..++....+++|++|++++|.
T Consensus 115 ~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~- 188 (466)
T 1o6v_A 115 TGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK- 188 (466)
T ss_dssp CEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-
T ss_pred CEEECCCCC-CCCChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-
Confidence 999998885 444555888889999999887533 333 477788888888853 33344432277888888888765
Q ss_pred ccccc--ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772 174 LKRFL--EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN 251 (583)
Q Consensus 174 l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~ 251 (583)
+..++ ..+.+|+.|++++|.++.+++ ++.+++|+.|++++|.... + ..+..+++|++|++++|......+ +..
T Consensus 189 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 189 VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 33222 344678888888888777665 6777888888888776433 3 346677788888888776544333 677
Q ss_pred CCcccEEEccCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 252 LESLKIMLANETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 252 l~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
+++|+.|++++|.+... |+.|++++|.+.+++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus 264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence 77888888888766542 7788888888777655 6777888888888888776664 677788888888877
Q ss_pred cccccC
Q 036772 324 KRLQSL 329 (583)
Q Consensus 324 ~~L~~l 329 (583)
.+..+
T Consensus 342 -~l~~~ 346 (466)
T 1o6v_A 342 -KVSDV 346 (466)
T ss_dssp -CCCCC
T ss_pred -ccCCc
Confidence 34433
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.9e-26 Score=246.17 Aligned_cols=289 Identities=19% Similarity=0.255 Sum_probs=141.8
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL 93 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L 93 (583)
.+++|+.|++++|.+ ..++. +..+ ++|++|++++|.+..++....+++|++|++++|.++.++. +..+++|
T Consensus 66 ~l~~L~~L~Ls~n~l------~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 66 YLNNLTQINFSNNQL------TDITP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GCTTCCEEECCSSCC------CCCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhcCCCEEECCCCcc------CCchh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 455555555555431 22222 4444 3555555555555555542355555555555555555543 5555555
Q ss_pred cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772 94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN 173 (583)
Q Consensus 94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~ 173 (583)
++|++++|. +..++.+..+++|++|++.++ ...++ .++.+++|+.|++++| .+..++....+++|++|++++|..
T Consensus 137 ~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 137 NRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp SEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred CEEECCCCc-cCCChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcc
Confidence 555555553 223344555555555555431 11111 2555555555555553 233333222455555555555432
Q ss_pred ccccc-ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCC
Q 036772 174 LKRFL-EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNL 252 (583)
Q Consensus 174 l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l 252 (583)
....+ ..+.+|+.|++++|.++.++ .+..+++|+.|++++|......+ +..+++|++|++++|.... ++. +..+
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l 286 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGL 286 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTC
T ss_pred cccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCC
Confidence 22111 22345555555555555543 24555555555555554433222 4555555555555543332 222 4555
Q ss_pred CcccEEEccCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 253 ESLKIMLANETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 253 ~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
++|+.|++++|.+... |+.|++++|.+++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred CccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCC
Confidence 5555555555554322 5555555555555433 445555555555555555543 3455555555555555
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=3.2e-26 Score=263.39 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=56.5
Q ss_pred CCCCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhh-hccc--c
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQ-LWNG--V 87 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~-l~~~--~ 87 (583)
++++||+|++++|. ....+ |..+..+ ++|++|++++|.+..+ |..| .+++|++|+|++|.+.. ++.. +
T Consensus 46 ~l~~L~~LdLs~n~-----~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 46 FLEQLQLLELGSQY-----TPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SCCSCSEEEECTTC-----CCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ccccCeEEeCCCCC-----CccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 55555555555543 22333 4445555 3566666666655554 3333 55556666666665553 2332 5
Q ss_pred cCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCc
Q 036772 88 QNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASL 127 (583)
Q Consensus 88 ~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l 127 (583)
.++++|++|+|++|......+ .++.+++|++|+|++|...
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 556666666666655444332 2555666666666655443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=4e-26 Score=245.76 Aligned_cols=271 Identities=20% Similarity=0.189 Sum_probs=197.2
Q ss_pred eecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCCC-C
Q 036772 35 VRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIPD-L 110 (583)
Q Consensus 35 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l 110 (583)
..+|.+ +|.++++|++++|.++.++. .| .+++|++|++++|.++.+ +..+.++++|++|+|++|......+. |
T Consensus 24 ~~ip~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 24 VAVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp SSCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CcCCCC---CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 345543 45789999999999988864 34 788999999999999877 56689999999999999865544333 7
Q ss_pred CCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccc----ccCCCcC
Q 036772 111 SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL----EISCNIE 185 (583)
Q Consensus 111 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~----~~~~~L~ 185 (583)
..+++|++|+|++|......+..+..+++|+.|++++|......+..+ .+++|++|++++|. +..++ ..+.+|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence 889999999999988777777788999999999998854333334455 78999999999874 33333 3457888
Q ss_pred EEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCc
Q 036772 186 NLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETA 264 (583)
Q Consensus 186 ~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~ 264 (583)
.|++++|.+..++. .+..+++|+.|++++|.....+|.......+|++|++++|......+..+..+++|+.|++++|.
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 89999988887765 57888899999999988888888777777789999999876544333567888888888887776
Q ss_pred cccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772 265 ISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 265 i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 323 (583)
+.. ++ ..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|
T Consensus 260 l~~--------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 260 IST--------------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp CCE--------------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred CCc--------------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 543 22 2344455555555555555433 334445555555555554
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=6e-26 Score=261.17 Aligned_cols=307 Identities=17% Similarity=0.149 Sum_probs=203.7
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCC-CCCC-CCCC-CCCCceEEEccCCChhhh-cccccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYP-LKSL-PSKN-IPEHLVSLEMPHSNIEQL-WNGVQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~~~l~~l-~~~~~~ 89 (583)
-.++|+.|++++|. .....+..+..+ .+|++|++++|. ...+ |..| .+++|++|+|++|.+..+ |..+.+
T Consensus 22 lp~~l~~LdLs~N~-----i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-----IRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCC-----CCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCCCc-----CCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 34789999999986 334457788888 599999999994 5566 4455 899999999999999977 677999
Q ss_pred CCCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CC--CC
Q 036772 90 LAALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NL--DS 162 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l--~~ 162 (583)
+++|++|+|++|......+. +..+++|++|+|++|......+ ..++++++|++|++++|......+..+ .+ ++
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 99999999999987765553 8899999999999987665443 578999999999999965444344444 33 66
Q ss_pred ccEEEecCCCCcccccccCC---------CcCEEeccCCCCcc-cccc--------------------------------
Q 036772 163 LKVLYLGGCSNLKRFLEISC---------NIENLDLSETAIEE-LPSS-------------------------------- 200 (583)
Q Consensus 163 L~~L~L~~c~~l~~~~~~~~---------~L~~L~L~~~~i~~-lp~~-------------------------------- 200 (583)
|+.|++++|......+..+. .|+.|++++|.+.. ++..
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 77777766544333322211 25666666654431 1111
Q ss_pred ----ccC--CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC------
Q 036772 201 ----IGN--LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN------ 268 (583)
Q Consensus 201 ----i~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~------ 268 (583)
+.. .++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.+...
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 111 14566666666655555555566666666666666655555555666666666666666655332
Q ss_pred ----ccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCC
Q 036772 269 ----LVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPE 331 (583)
Q Consensus 269 ----L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 331 (583)
|+.|++++|.+..++ ..+..+++|+.|++++|.++.++. +++|+.|++++| ++..+|.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~ 398 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPK 398 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCC-Ccccccc
Confidence 666666666666654 345666666666666666665543 555666666655 3344443
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.9e-26 Score=252.69 Aligned_cols=298 Identities=18% Similarity=0.231 Sum_probs=201.6
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccCCCC
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQNLAA 92 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~ 92 (583)
++|+.|++++|. .....|..+..+ ++|++|++++|.++.+++ .+ .+++|++|++++|.+..++.. +.++++
T Consensus 26 ~~L~~L~Ls~n~-----l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 26 AAMKSLDLSFNK-----ITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp TTCCEEECCSSC-----CCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCccEEECcCCc-----cCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 589999999985 233446778888 599999999999998875 34 889999999999999988765 899999
Q ss_pred ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEe
Q 036772 93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYL 168 (583)
Q Consensus 93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 168 (583)
|++|+|++|.... ..| .++.+++|++|++++|.....++ ..++.+++|++|++++|......|..+ .+++|++|++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9999999997664 333 58999999999999998677776 578999999999999976555567666 6777777777
Q ss_pred cCCCCccccc----ccCCCcCEEeccCCCCcccc--------------------------------ccccCC--------
Q 036772 169 GGCSNLKRFL----EISCNIENLDLSETAIEELP--------------------------------SSIGNL-------- 204 (583)
Q Consensus 169 ~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp--------------------------------~~i~~l-------- 204 (583)
+++.. ..++ ..+.+|+.|++++|.++.++ ..+..+
T Consensus 180 ~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 180 HLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp ECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred ccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 66532 2222 22455666666655554431 001111
Q ss_pred ---------------------------------------------------CCccEEeeeCCCCCccccccc-cCCCCCc
Q 036772 205 ---------------------------------------------------SRLVRLDLTNCSRLKSVSNSL-CNLKSLQ 232 (583)
Q Consensus 205 ---------------------------------------------------~~L~~L~L~~~~~l~~lp~~l-~~l~~L~ 232 (583)
++|+.|++++|.. ..+|..+ ..+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCcccc
Confidence 2333344443322 2344333 3466667
Q ss_pred EEEccCCCCCCcccc---ccCCCCcccEEEccCCcccc------------CccEEEeccCCCcccCccCCCCCCCCEEEc
Q 036772 233 YLFLSGCLKLEKLPE---EIGNLESLKIMLANETAISQ------------NLVDMSLVDCGITELPESLGRSPSLKFLNL 297 (583)
Q Consensus 233 ~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L 297 (583)
+|++++|...+.+|. .++.+++|+.|++++|.+.. .|+.|++++|.++.+|..+..+++|++|++
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence 777766665554432 25566667777777666532 266677777776666666666677777777
Q ss_pred cCCCCcccChhhhccCcccccccccc
Q 036772 298 AENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 298 s~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
++|.++.+|..+. ++|+.|++++|
T Consensus 418 s~N~l~~l~~~~~--~~L~~L~Ls~N 441 (549)
T 2z81_A 418 SSTGIRVVKTCIP--QTLEVLDVSNN 441 (549)
T ss_dssp TTSCCSCCCTTSC--TTCSEEECCSS
T ss_pred CCCCcccccchhc--CCceEEECCCC
Confidence 7776666654432 35555555555
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=6.8e-26 Score=243.97 Aligned_cols=267 Identities=20% Similarity=0.206 Sum_probs=213.5
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
.-+.++.++..++.+|..+ ++++++|++++|+++.++ ..+.++++|++|+|++|......| .|..+++|++|+|++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 3467888888999999765 568999999999999885 569999999999999997666555 5899999999999998
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCccccc-
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEELPS- 199 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~- 199 (583)
......+..++.+++|+.|+|++|......|..+ .+++|++|++++|......+ ..+.+|+.|++++|.++.+|.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 6543333467899999999999965444445556 89999999999975433222 344689999999999998875
Q ss_pred cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCC
Q 036772 200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI 279 (583)
Q Consensus 200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l 279 (583)
.+..+++|+.|++++|......+..+..+++|++|++++|..++.+|.......+ |+.|++++|.+
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--------------L~~L~l~~n~l 236 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--------------LTSLSITHCNL 236 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC--------------CSEEEEESSCC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc--------------ccEEECcCCcc
Confidence 4888999999999998877666778888999999999998888887776555444 45556666666
Q ss_pred cccC-ccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccccccccccC
Q 036772 280 TELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQNCKRLQSL 329 (583)
Q Consensus 280 ~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~l 329 (583)
+++| ..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|. +..+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 287 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVV 287 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEE
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceE
Confidence 6687 568899999999999999997764 57899999999999983 4443
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3e-26 Score=253.67 Aligned_cols=282 Identities=18% Similarity=0.148 Sum_probs=223.4
Q ss_pred CCCCcceEEEecCCCCCCccceecCCc-ccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRC-LESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~ 89 (583)
.+.+++.|+++++ ....+|.. +..+ ++|++|++++|.+..+|+ .+ .+++|++|++++|.+..++.. +..
T Consensus 49 ~l~~l~~l~l~~~------~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNS------TMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSC------EESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCC------CCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 5688999999887 45667765 4556 589999999999998876 44 789999999999999988765 689
Q ss_pred CCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEe
Q 036772 90 LAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL 168 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 168 (583)
+++|++|+|++|......+. |+.+++|++|+|++|......|..++.+++|+.|++++| .++.++. ..+++|+.|++
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~l 199 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV 199 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCG-GGCTTCSEEEC
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcCh-hhhhhhhhhhc
Confidence 99999999999976544444 689999999999998876666778999999999999985 5665542 26889999999
Q ss_pred cCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772 169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE 248 (583)
Q Consensus 169 ~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~ 248 (583)
++|. +..+ ....+|+.|++++|.+..+|..+ .++|+.|++++|.... +..+..+++|+.|++++|...+..|..
T Consensus 200 ~~n~-l~~l-~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 200 SYNL-LSTL-AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CSSC-CSEE-ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccCc-cccc-cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 9863 3333 24468999999999999887654 3789999999987654 467888999999999999887788888
Q ss_pred cCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772 249 IGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 324 (583)
++.+++|+.|++++|.+. .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.
T Consensus 274 ~~~l~~L~~L~Ls~N~l~--------------~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp GTTCSSCCEEECTTSCCC--------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred hcCccCCCEEECCCCCCC--------------CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 999988888777776654 35666666777777777777777777777777777777777763
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.4e-25 Score=250.29 Aligned_cols=341 Identities=19% Similarity=0.146 Sum_probs=211.2
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l 90 (583)
++++|+.|++++|. .....|..+..+ ++|++|++++|.++.+|.. | .+++|++|++++|.+..++ ..+.++
T Consensus 47 ~l~~L~~L~Ls~n~-----l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 47 RYSQLTSLDVGFNT-----ISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GGTTCSEEECCSSC-----CCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred CCCcCcEEECCCCc-----cCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 56677777776664 222334556666 4777777777777777763 4 6777777777777777665 347777
Q ss_pred CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhcc--CCCCCCEEEccCCCCCCcCC-CcC-CC-----
Q 036772 91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQ--HLNKLVFLNLGRCISLKSLP-TGI-NL----- 160 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~c~~l~~lp-~~~-~l----- 160 (583)
++|++|+|++|......+ .+..+++|++|++++|......+..++ .+++|+.|++++|. ++.++ ..+ .+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhh
Confidence 777777777776655544 366777777777777655444444332 45677777777653 33332 211 12
Q ss_pred ----------------------CCccEEEecCCCCcccccccC-----CCcCEEeccCCCCcccc-ccccCCCCccEEee
Q 036772 161 ----------------------DSLKVLYLGGCSNLKRFLEIS-----CNIENLDLSETAIEELP-SSIGNLSRLVRLDL 212 (583)
Q Consensus 161 ----------------------~~L~~L~L~~c~~l~~~~~~~-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L 212 (583)
++|++|++++|......+..+ .+|+.|++++|.++.++ ..++.+++|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 344555555543222222222 23777777777776554 34666777777777
Q ss_pred eCCCCCccccccc---------------------------------cCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772 213 TNCSRLKSVSNSL---------------------------------CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259 (583)
Q Consensus 213 ~~~~~l~~lp~~l---------------------------------~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 259 (583)
++|......|..+ ..+++|++|++++|...+..+..+..+++|+.|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 7765544444444 4455555555555555555555677777788888
Q ss_pred ccCCccc--------------cCccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCc-ccC-hhhhccCccccccccc
Q 036772 260 ANETAIS--------------QNLVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFE-KIP-SSIKQLSNLLFLTLQN 322 (583)
Q Consensus 260 l~~~~i~--------------~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~-~lp-~~i~~l~~L~~L~L~~ 322 (583)
+++|.+. ..|+.|++++|.++++ |..+..+++|+.|++++|.++ .+| ..+..+++|+.|++++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 7776421 2478888888888885 567888999999999999987 465 5678889999999988
Q ss_pred ccccccCC-----CCCCCCeeeeeCC---------cCcccccCccccccccccc
Q 036772 323 CKRLQSLP-----ELPCGSNIFARYC---------TSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 323 c~~L~~lp-----~lp~~~~l~~~~c---------~sL~~l~~l~~l~~~~~~~ 362 (583)
|+ +..++ .+|....+...++ ..+..+++|+.+.+..+.+
T Consensus 440 n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 440 NK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 85 33322 2222224433322 2344556666666655543
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.4e-26 Score=252.77 Aligned_cols=142 Identities=18% Similarity=0.182 Sum_probs=108.4
Q ss_pred CCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccc--------------------ccCCCCCcEEEccCCCC
Q 036772 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS--------------------LCNLKSLQYLFLSGCLK 241 (583)
Q Consensus 182 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--------------------l~~l~~L~~L~l~~c~~ 241 (583)
.+|+.|+++++.++.+|..+..+ +|+.|++++|... .+|.. ...+++|++|++++|..
T Consensus 282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359 (570)
T ss_dssp TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence 56777777777777777766666 6666666665543 22221 15678899999988765
Q ss_pred CCc--cccccCCCCcccEEEccCCcccc---------CccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcc-cCh
Q 036772 242 LEK--LPEEIGNLESLKIMLANETAISQ---------NLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEK-IPS 307 (583)
Q Consensus 242 l~~--lp~~l~~l~~L~~L~l~~~~i~~---------~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~-lp~ 307 (583)
... .|..+..+++|+.|++++|.+.. .|+.|++++|.+.+.+ ..+..+++|++|++++|.++. .|.
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 433 26778899999999999987653 3899999999988854 468899999999999999885 566
Q ss_pred hhhccCcccccccccccc
Q 036772 308 SIKQLSNLLFLTLQNCKR 325 (583)
Q Consensus 308 ~i~~l~~L~~L~L~~c~~ 325 (583)
.+..+++|+.|++++|.-
T Consensus 440 ~~~~l~~L~~L~l~~n~l 457 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSF 457 (570)
T ss_dssp TTTTCTTCCEEECTTCEE
T ss_pred hhhcCCcCcEEECcCCcC
Confidence 788999999999999854
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-25 Score=235.25 Aligned_cols=290 Identities=14% Similarity=0.125 Sum_probs=222.5
Q ss_pred CCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772 46 NELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL 121 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 121 (583)
.++++|+++++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|......|. ++.+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 58999999999999999864 78999999999999998875 689999999999999987666664 789999999999
Q ss_pred eCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc
Q 036772 122 VGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP 198 (583)
Q Consensus 122 ~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp 198 (583)
++|... .+|.. ++.+++|++|++++| .++.++. .+ .+++|++|++++|..-..-...+++|+.|++++|.++.++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 998654 56654 589999999999995 4555544 45 7999999999997654444466788999999999887654
Q ss_pred ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCC
Q 036772 199 SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCG 278 (583)
Q Consensus 199 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~ 278 (583)
..++|+.|++++|.... +|.. ..++|+.|++++|..... ..+..+++|+.|++++|.+
T Consensus 203 ----~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l------------- 260 (390)
T 3o6n_A 203 ----IPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL------------- 260 (390)
T ss_dssp ----CCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-------------
T ss_pred ----CCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC-------------
Confidence 34689999999876543 3432 357899999998865542 4566777777666666554
Q ss_pred Ccc-cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCcccccc
Q 036772 279 ITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFT 357 (583)
Q Consensus 279 l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~ 357 (583)
.+ .|..+..+++|++|++++|.++.+|..+..+++|+.|++++| .+..+|. .+..+++|+.+.+
T Consensus 261 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------------~~~~l~~L~~L~L 325 (390)
T 3o6n_A 261 -EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER-------------NQPQFDRLENLYL 325 (390)
T ss_dssp -CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGG-------------GHHHHTTCSEEEC
T ss_pred -CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCc-------------cccccCcCCEEEC
Confidence 44 477899999999999999999999988889999999999998 5666552 2344555666666
Q ss_pred cccccceeeeecccccCC
Q 036772 358 RSSELWQAFDFCNCFKLN 375 (583)
Q Consensus 358 ~~~~~~~~l~~~~C~~L~ 375 (583)
.+|.+ ..+.+..+.+|.
T Consensus 326 ~~N~i-~~~~~~~~~~L~ 342 (390)
T 3o6n_A 326 DHNSI-VTLKLSTHHTLK 342 (390)
T ss_dssp CSSCC-CCCCCCTTCCCS
T ss_pred CCCcc-ceeCchhhccCC
Confidence 65554 233455555554
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=3.7e-25 Score=248.81 Aligned_cols=309 Identities=22% Similarity=0.245 Sum_probs=211.8
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccC-CCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCC
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFF-NELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLA 91 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~ 91 (583)
++|+.|++++|. .....+..+..+. .+|+.|++++|.++.++.. + .+++|++|++++|.+..++ ..+..++
T Consensus 222 ~~L~~L~L~~n~-----l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 222 TSIRNLSLSNSQ-----LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp SCCCEEECTTSC-----CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred ccccEEEccCCc-----ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence 667888887774 3344456666653 3599999999998877643 4 7889999999999888654 4588899
Q ss_pred CccEEeccCCCCCC-----CCC-----CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC-CCCcCCCcC--
Q 036772 92 ALKRLNLSYCKQLS-----RIP-----DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI-SLKSLPTGI-- 158 (583)
Q Consensus 92 ~L~~L~Ls~~~~l~-----~~p-----~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~-~l~~lp~~~-- 158 (583)
+|+.|++++|.... .+| .+..+++|++|++++|......+..+..+++|++|++++|. .+..++...
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~ 376 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhc
Confidence 99999998765332 233 46778899999999887766666778888999999988763 233343322
Q ss_pred --CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCc-ccc-ccccCCCCccEEeeeCCCCCccccccccCCCCC
Q 036772 159 --NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIE-ELP-SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231 (583)
Q Consensus 159 --~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~-~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 231 (583)
..++|+.|++++|......|. ...+|+.|++++|.+. .+| ..+..+++|++|++++|......+..+..+++|
T Consensus 377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 456 (680)
T 1ziw_A 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 456 (680)
T ss_dssp GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence 235777788777654433332 3456777888877776 354 457777777788777776655556666677777
Q ss_pred cEEEccCCCCC--CccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCcccCc---------cCCCCC
Q 036772 232 QYLFLSGCLKL--EKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITELPE---------SLGRSP 290 (583)
Q Consensus 232 ~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~lp~---------~l~~l~ 290 (583)
+.|++++|... +..|..+..+++|+.|++++|.+... |+.|++++|.++.++. .+..++
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~ 536 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence 77777776542 45666677777777777777665432 6777777777665421 256677
Q ss_pred CCCEEEccCCCCcccChh-hhccCcccccccccccccccCC
Q 036772 291 SLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 291 ~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp 330 (583)
+|+.|+|++|.++.+|.. +..+++|+.|++++| +++.+|
T Consensus 537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~ 576 (680)
T 1ziw_A 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLP 576 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCC
Confidence 777777777777777653 567777777777665 455555
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=1.3e-24 Score=232.23 Aligned_cols=308 Identities=22% Similarity=0.236 Sum_probs=219.8
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 95 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 95 (583)
++|+.|++++|.+ ..+|.. +.+|++|++++|.++.+|.. +++|++|++++|.++.+| .+.++++|++
T Consensus 91 ~~L~~L~l~~n~l------~~lp~~----~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 91 PHLESLVASCNSL------TELPEL----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp TTCSEEECCSSCC------SSCCCC----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CCCCEEEccCCcC------Cccccc----cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 5799999988853 235542 36899999999999888764 378999999999999988 5999999999
Q ss_pred EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772 96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK 175 (583)
Q Consensus 96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 175 (583)
|++++|+.. .+|.. .++|++|++++|... .+| .++.+++|+.|++++| .++.+|.. .++|++|++++|. +.
T Consensus 158 L~l~~N~l~-~lp~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N-~l~~l~~~--~~~L~~L~l~~n~-l~ 228 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN-SLKKLPDL--PLSLESIVAGNNI-LE 228 (454)
T ss_dssp EECCSSCCS-CCCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CS
T ss_pred EECCCCcCc-ccCCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCC-cCCcCCCC--cCcccEEECcCCc-CC
Confidence 999999654 46643 358999999998644 466 6899999999999985 56666653 3689999999974 44
Q ss_pred cccc--cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772 176 RFLE--ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253 (583)
Q Consensus 176 ~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 253 (583)
.+|. .+++|+.|++++|.++.+|.. +++|+.|++++|.... +|.. .++|++|++++|...+ +|.. .+
T Consensus 229 ~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~ 297 (454)
T 1jl5_A 229 ELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PP 297 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CT
T ss_pred cccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CC
Confidence 6664 345789999999999988863 4789999999886543 5543 4789999999976433 3321 26
Q ss_pred cccEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772 254 SLKIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327 (583)
Q Consensus 254 ~L~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 327 (583)
+|+.|++++|.+.. .|+.|++++|.++++|.. +++|+.|++++|.++.+|. .+++|+.|++++| .++
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N-~l~ 370 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN-PLR 370 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCS
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-CCC
Confidence 88899999887764 589999999999888765 5889999999999998887 4788999999987 667
Q ss_pred cCCCCCCCC-eeeeeCC--cCcccccCcccccccccccc
Q 036772 328 SLPELPCGS-NIFARYC--TSLETLSNLSTLFTRSSELW 363 (583)
Q Consensus 328 ~lp~lp~~~-~l~~~~c--~sL~~l~~l~~l~~~~~~~~ 363 (583)
.+|.+|..+ .+..... .-...+++|+.+.+..|.+.
T Consensus 371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SCCCCCTTCCEEECCC-----------------------
T ss_pred cCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 777777665 4321100 00011245666666666543
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.1e-24 Score=232.96 Aligned_cols=280 Identities=18% Similarity=0.142 Sum_probs=215.9
Q ss_pred CCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCC
Q 036772 13 FRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAA 92 (583)
Q Consensus 13 ~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~ 92 (583)
.++++|+.|++++|.+ ..+| ++..+ ++|++|++++|.++.+| ...+++|++|++++|.++.++ +..+++
T Consensus 39 ~~l~~L~~L~Ls~n~l------~~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSI------TDMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp HHHTTCCEEECCSSCC------CCCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred hHcCCCCEEEccCCCc------ccCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCc
Confidence 3789999999999853 2345 67777 59999999999999997 448899999999999999885 889999
Q ss_pred ccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCC
Q 036772 93 LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCS 172 (583)
Q Consensus 93 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~ 172 (583)
|++|++++|.... ++ ++.+++|++|++++|.... + .++.+++|+.|++++|..++.++ ...+++|++|++++|.
T Consensus 108 L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc
Confidence 9999999996554 55 8999999999999987544 4 38899999999999987888773 2279999999999974
Q ss_pred Cccccc-ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772 173 NLKRFL-EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN 251 (583)
Q Consensus 173 ~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~ 251 (583)
+..+| ...++|+.|++++|.++.++ ++.+++|+.|++++|.... +| +..+++|+.|++++|...+ +| ++.
T Consensus 182 -l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--~~~ 252 (457)
T 3bz5_A 182 -ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--VST 252 (457)
T ss_dssp -CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred -cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--HHH
Confidence 44444 34568999999999999884 8899999999999987655 66 8899999999999986554 34 456
Q ss_pred CCcccEEEccCCccccCccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCC-cccChhhhccCcccccccccccccc
Q 036772 252 LESLKIMLANETAISQNLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDF-EKIPSSIKQLSNLLFLTLQNCKRLQ 327 (583)
Q Consensus 252 l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l-~~lp~~i~~l~~L~~L~L~~c~~L~ 327 (583)
+++|+.|+++.+. |+.|++++|...+ +| ++.+++|+.|++++|.. ..+|. ..++|+.|++++|+.|+
T Consensus 253 l~~L~~L~l~~n~----L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 253 LSKLTTLHCIQTD----LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLV 321 (457)
T ss_dssp CTTCCEEECTTCC----CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCC
T ss_pred CCCCCEEeccCCC----CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhcccCC
Confidence 7788888888775 5566777776443 44 45667777777777763 34442 22334444444444433
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.9e-25 Score=243.32 Aligned_cols=260 Identities=15% Similarity=0.102 Sum_probs=207.7
Q ss_pred CCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772 46 NELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL 121 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 121 (583)
.+++.|+++++.+..+|+.+ .+++|++|++++|.+..++. .+..+++|++|+|++|......|. |+.+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 58999999999999999864 68999999999999998875 689999999999999986666554 789999999999
Q ss_pred eCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc
Q 036772 122 VGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP 198 (583)
Q Consensus 122 ~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp 198 (583)
++|... .+|. .++.+++|++|+|++|. +..++ ..+ .+++|++|++++|..-..-+..+++|+.|++++|.++.++
T Consensus 131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eCCCCC-CCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 998654 5554 46899999999999964 45544 445 8999999999997654444566788999999999887654
Q ss_pred ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCC
Q 036772 199 SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCG 278 (583)
Q Consensus 199 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~ 278 (583)
..++|+.|++++|... .++..+ .++|+.|++++|...+ +..+..+++|+.|++++|.+...
T Consensus 209 ----~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~---------- 269 (597)
T 3oja_B 209 ----IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI---------- 269 (597)
T ss_dssp ----CCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE----------
T ss_pred ----CCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC----------
Confidence 4568999999987654 334333 3689999999987654 35677777777766666654431
Q ss_pred CcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772 279 ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 279 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
.|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++| .+..+|
T Consensus 270 ---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 270 ---MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp ---ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCG
T ss_pred ---CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccC
Confidence 578899999999999999999999988888999999999998 455555
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=4.4e-24 Score=218.52 Aligned_cols=279 Identities=18% Similarity=0.208 Sum_probs=176.8
Q ss_pred CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhh-cccccCCCCc
Q 036772 17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL-WNGVQNLAAL 93 (583)
Q Consensus 17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L 93 (583)
+|+.++++++. ...+|..+ ++.|++|++++|.++.+|.. + .+++|++|++++|.++.+ |..+..+++|
T Consensus 32 ~l~~l~~~~~~------l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 32 HLRVVQCSDLG------LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp ETTEEECTTSC------CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCeEEEecCCC------ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 56777776552 33445433 35777778877777777653 3 677777888877777766 5567777778
Q ss_pred cEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCC--cCCCcC-CCCCccEEEec
Q 036772 94 KRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLK--SLPTGI-NLDSLKVLYLG 169 (583)
Q Consensus 94 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~L~ 169 (583)
++|+|++|... .+|. +. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+ .+++|++|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 88888777543 4442 22 677777777776555555567777777888777753321 334444 67777777777
Q ss_pred CCCCccccccc-CCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772 170 GCSNLKRFLEI-SCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247 (583)
Q Consensus 170 ~c~~l~~~~~~-~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 247 (583)
+|. +..+|.. ..+|+.|++++|.++.+ |..+..+++|+.|++++|......+..+..+++|++|++++|. +..+|.
T Consensus 180 ~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~ 257 (330)
T 1xku_A 180 DTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPG 257 (330)
T ss_dssp SSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT
T ss_pred CCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCCh
Confidence 754 3334432 35677777777777765 4457777777777777776655555567777777777777764 346666
Q ss_pred ccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cC------CCCCCCCEEEccCCCCcc--c-ChhhhccCcccc
Q 036772 248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SL------GRSPSLKFLNLAENDFEK--I-PSSIKQLSNLLF 317 (583)
Q Consensus 248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l------~~l~~L~~L~Ls~n~l~~--l-p~~i~~l~~L~~ 317 (583)
.+..+++|+.|++++|.+.. ++. .+ ...++|+.|++++|.+.. + |..+..+.+|+.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~--------------~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISA--------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCC--------------CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred hhccCCCcCEEECCCCcCCc--------------cChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 66666666666666555443 332 12 124677777787777652 3 345666777777
Q ss_pred cccccc
Q 036772 318 LTLQNC 323 (583)
Q Consensus 318 L~L~~c 323 (583)
+++++|
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 777765
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.6e-24 Score=227.21 Aligned_cols=271 Identities=25% Similarity=0.305 Sum_probs=202.8
Q ss_pred CCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772 45 FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC 124 (583)
Q Consensus 45 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~ 124 (583)
|++|++|++++|.++.+|.. +++|++|++++|.++.++.. .++|++|++++|... .+|+++.+++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCC
Confidence 35666666666666666643 35667777777666655432 267888888888654 4778888888888888887
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNL 204 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l 204 (583)
... .+|.. ..+|++|++++| .++.+|....+++|++|++++|. +..+|....+|+.|++++|.++.+|. ++.+
T Consensus 164 ~l~-~lp~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l 236 (454)
T 1jl5_A 164 SLK-KLPDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNL 236 (454)
T ss_dssp CCS-CCCCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTC
T ss_pred cCc-ccCCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCC
Confidence 543 45543 358888888885 56667743389999999999864 55577777899999999999998885 8899
Q ss_pred CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCC
Q 036772 205 SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCG 278 (583)
Q Consensus 205 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~ 278 (583)
++|++|++++|... .+|.. +++|++|++++|... .+|.. +++|+.|++++|.+.. .|+.|++++|.
T Consensus 237 ~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 237 PFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308 (454)
T ss_dssp TTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCC-ccccc---ccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence 99999999997654 45543 478999999987644 46653 4789999999987765 49999999999
Q ss_pred CcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCC-eeeeeCC
Q 036772 279 ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS-NIFARYC 343 (583)
Q Consensus 279 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~-~l~~~~c 343 (583)
+++++.. .++|+.|++++|.++.+|.. +++|+.|++++| +++.+|..+..+ .+...++
T Consensus 309 l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N 367 (454)
T 1jl5_A 309 IRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYN 367 (454)
T ss_dssp CSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCC
Confidence 9886632 25899999999999998865 589999999998 677888755555 5555443
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=3.5e-24 Score=228.97 Aligned_cols=296 Identities=17% Similarity=0.142 Sum_probs=224.7
Q ss_pred CcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCE
Q 036772 39 RCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEW 118 (583)
Q Consensus 39 ~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~ 118 (583)
..+..+ ++|++|+++++.++.+|....+++|++|++++|.++.++ +..+++|++|++++|.... ++ ++.+++|++
T Consensus 36 ~~~~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTY 110 (457)
T ss_dssp EEHHHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCE
T ss_pred cChhHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCE
Confidence 355666 599999999999999985458999999999999999885 8899999999999997544 44 889999999
Q ss_pred EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc-ccCCCcCEEeccCCCCccc
Q 036772 119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL-EISCNIENLDLSETAIEEL 197 (583)
Q Consensus 119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l 197 (583)
|++++|.... ++ ++.+++|+.|++++| .++.++ ...+++|++|++++|..+..++ ..+.+|+.|++++|.++.+
T Consensus 111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCe-ec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence 9999986543 44 889999999999985 566664 2279999999999997776653 3457899999999999998
Q ss_pred cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772 198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277 (583)
Q Consensus 198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~ 277 (583)
| ++.+++|+.|++++|..... .+..+++|++|++++|...+ +| ++.+++|+.|++++|.+..
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~---------- 247 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE---------- 247 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC----------
T ss_pred c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC----------
Confidence 7 88999999999999876543 37889999999999986554 66 7788888888777776554
Q ss_pred CCcccCccCCCCCCCCEEEccCCCCc-----------ccChhhhccCcccccccccccccccCCCCCCCC-eeeeeCCcC
Q 036772 278 GITELPESLGRSPSLKFLNLAENDFE-----------KIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS-NIFARYCTS 345 (583)
Q Consensus 278 ~l~~lp~~l~~l~~L~~L~Ls~n~l~-----------~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~-~l~~~~c~s 345 (583)
+| ++.+++|+.|++++|.++ .+| .+.+++|+.|++++|+.+..+|.-...+ .+...+
T Consensus 248 ----~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~--- 316 (457)
T 3bz5_A 248 ----LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ--- 316 (457)
T ss_dssp ----CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT---
T ss_pred ----cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh---
Confidence 33 344555555555544443 334 4678999999999999888877432333 343333
Q ss_pred cccccCcccccccccccceeeeecccccCCcc
Q 036772 346 LETLSNLSTLFTRSSELWQAFDFCNCFKLNRN 377 (583)
Q Consensus 346 L~~l~~l~~l~~~~~~~~~~l~~~~C~~L~~~ 377 (583)
.++|+.+.+..|.+.. +++.+|.+|..-
T Consensus 317 ---~~~L~~L~L~~N~l~~-l~l~~l~~L~~L 344 (457)
T 3bz5_A 317 ---NPKLVYLYLNNTELTE-LDVSHNTKLKSL 344 (457)
T ss_dssp ---CTTCCEEECTTCCCSC-CCCTTCTTCSEE
T ss_pred ---cccCCEEECCCCcccc-cccccCCcCcEE
Confidence 3455666666666433 567777776543
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.3e-24 Score=219.67 Aligned_cols=279 Identities=17% Similarity=0.215 Sum_probs=145.6
Q ss_pred CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCc
Q 036772 17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAAL 93 (583)
Q Consensus 17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L 93 (583)
+|+.++++++. ...+|..+ +++|++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+..+++|
T Consensus 34 ~l~~l~~~~~~------l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 34 HLRVVQCSDLG------LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp ETTEEECCSSC------CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred cCCEEECCCCC------ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 45666665542 23344433 2456666666666665543 23 556666666666666654 4446666666
Q ss_pred cEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCC--CcCCCcC-CCCCccEEEec
Q 036772 94 KRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISL--KSLPTGI-NLDSLKVLYLG 169 (583)
Q Consensus 94 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l--~~lp~~~-~l~~L~~L~L~ 169 (583)
++|+|++|... .+|. +. ++|++|++++|......+..++.+++|+.|++++|..- ...|..+ .+ +|++|+++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 66666666433 3332 22 56666666665443333334566666666666654321 1223333 23 56666666
Q ss_pred CCCCccccccc-CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772 170 GCSNLKRFLEI-SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247 (583)
Q Consensus 170 ~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 247 (583)
+|. +..+|.. ..+|+.|++++|.++.++ ..+..+++|+.|++++|......+..+..+++|++|++++|. +..+|.
T Consensus 181 ~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~ 258 (332)
T 2ft3_A 181 EAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPA 258 (332)
T ss_dssp SSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT
T ss_pred CCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecCh
Confidence 543 3333322 235666666666666554 345566666666666655544444455566666666666553 235555
Q ss_pred ccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCC------CCCCCEEEccCCCCc--cc-ChhhhccCcccc
Q 036772 248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGR------SPSLKFLNLAENDFE--KI-PSSIKQLSNLLF 317 (583)
Q Consensus 248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~------l~~L~~L~Ls~n~l~--~l-p~~i~~l~~L~~ 317 (583)
.+..+++|+.|++++|.+. +++ ..+.. .++|+.|++++|.+. .+ |..+..+++|+.
T Consensus 259 ~l~~l~~L~~L~l~~N~l~--------------~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNIT--------------KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp TGGGCTTCCEEECCSSCCC--------------BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred hhhcCccCCEEECCCCCCC--------------ccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 5555555555555444433 233 12211 356677777777665 23 344566677777
Q ss_pred ccccccc
Q 036772 318 LTLQNCK 324 (583)
Q Consensus 318 L~L~~c~ 324 (583)
+++++|+
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 7776654
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.7e-24 Score=221.46 Aligned_cols=230 Identities=25% Similarity=0.327 Sum_probs=161.2
Q ss_pred CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
..++++|++++|.++.+|..+.++++|++|+|++|... .+| .++.+++|++|+|++|... .+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 35677777777777777777777777888888777655 555 4777778888888876544 67777888888888888
Q ss_pred cCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccc
Q 036772 146 GRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL 225 (583)
Q Consensus 146 ~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 225 (583)
++|+.++.+|..+. ...+.+ ....+.+|+.|++++|.++.+|..++.+++|++|++++|... .+|..+
T Consensus 158 ~~n~~~~~~p~~~~-----~~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLA-----STDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSE-----EEC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred CCCCCccccChhHh-----hccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence 88777777776551 011100 012233455555555666677777777788888888877654 466667
Q ss_pred cCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-c
Q 036772 226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-K 304 (583)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~ 304 (583)
..+++|++|++++|...+.+|..++.+++|+.|++++|.+.. .+|..++.+++|+.|+|++|.+. .
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-------------TLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-------------BCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-------------hcchhhhcCCCCCEEeCCCCCchhh
Confidence 777888888888877777777777777777766666654332 36777888888888888887754 7
Q ss_pred cChhhhccCcccccccccc
Q 036772 305 IPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 305 lp~~i~~l~~L~~L~L~~c 323 (583)
+|..++.+++|+.+++...
T Consensus 293 iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCGGGGGSCTTCEEECCGG
T ss_pred ccHHHhhccCceEEeCCHH
Confidence 8888888888888887753
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=8.4e-24 Score=216.65 Aligned_cols=258 Identities=19% Similarity=0.192 Sum_probs=206.6
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
.+++.++++++.++.+|..+ .++|++|++++|.++.++. .+.++++|++|+|++|......| .+..+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 36999999999999999866 4789999999999998854 69999999999999997666555 589999999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcc--cccccCC--CcCEEeccCCCCccc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLK--RFLEISC--NIENLDLSETAIEEL 197 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~~~~~~~--~L~~L~L~~~~i~~l 197 (583)
|.. ..+|..+. ++|++|++++ +.++.+|.. + .+++|++|++++|..-. ..+..+. +|+.|++++|.++.+
T Consensus 112 n~l-~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHL-VEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SCC-CSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CcC-CccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 764 46676555 8999999998 456777765 3 79999999999976421 2233222 788999999999999
Q ss_pred cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772 198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277 (583)
Q Consensus 198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~ 277 (583)
|..+. ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~------------- 252 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK------------- 252 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-------------
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-------------
Confidence 87654 799999999988777677888899999999999987666666677777777766666555
Q ss_pred CCcccCccCCCCCCCCEEEccCCCCcccChh-hhc------cCccccccccccc
Q 036772 278 GITELPESLGRSPSLKFLNLAENDFEKIPSS-IKQ------LSNLLFLTLQNCK 324 (583)
Q Consensus 278 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~------l~~L~~L~L~~c~ 324 (583)
++.+|..+..+++|+.|++++|.++.+|.. +.. ...|+.|++++|+
T Consensus 253 -l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 253 -LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 445888899999999999999999987643 222 4668888888875
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=3.2e-23 Score=212.09 Aligned_cols=258 Identities=20% Similarity=0.212 Sum_probs=200.5
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
.+++.++++++.++.+|..+ +++|++|++++|+++.++. .+.++++|++|+|++|......| .+..+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 37999999999999999765 4689999999999998876 58999999999999997766656 588999999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcc--c---ccccCCCcCEEeccCCCCcc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLK--R---FLEISCNIENLDLSETAIEE 196 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~---~~~~~~~L~~L~L~~~~i~~ 196 (583)
|. +..+|..+. ++|+.|++++| .++.++.. + .+++|++|++++|..-. . ....+.+|+.|++++|.++.
T Consensus 110 n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 110 NQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred Cc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 76 446666554 79999999985 56666654 3 79999999999876421 1 22345788889999998888
Q ss_pred ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEecc
Q 036772 197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD 276 (583)
Q Consensus 197 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~ 276 (583)
+|..+. ++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~------------ 251 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK------------ 251 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC------------
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc------------
Confidence 887654 788999998887766667788888889999998887665555567777776666555554
Q ss_pred CCCcccCccCCCCCCCCEEEccCCCCcccChhhh-------ccCccccccccccc
Q 036772 277 CGITELPESLGRSPSLKFLNLAENDFEKIPSSIK-------QLSNLLFLTLQNCK 324 (583)
Q Consensus 277 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~-------~l~~L~~L~L~~c~ 324 (583)
++.+|..+..+++|++|++++|.++.+|...- ..+.|+.|++++++
T Consensus 252 --l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 252 --LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp --CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred --CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 44588888899999999999999988765321 23667777777764
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=3.8e-23 Score=229.81 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=96.0
Q ss_pred CcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCC
Q 036772 17 RLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAA 92 (583)
Q Consensus 17 ~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~ 92 (583)
+++.|++++|. ...++ ..|..+ ++|++|++++|.++.+|+. | .+++|++|+|++|+++.++.+ +.++++
T Consensus 53 ~~~~LdLs~N~------i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP------LRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC------CCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC------CCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 68888888884 34554 467777 4888888888888888764 4 688888888888888888754 788888
Q ss_pred ccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCch-hhhhhccCCCCCCEEEccCC
Q 036772 93 LKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 93 L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c 148 (583)
|++|+|++|......+ .|+.+++|++|++++|.... .+|..++.+++|++|++++|
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 8888888886544433 37888888888888876543 45677788888888888774
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=5.6e-24 Score=217.60 Aligned_cols=224 Identities=23% Similarity=0.358 Sum_probs=175.3
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
.+++.|+++++.++.+|..+ .+++|++|++++|.++.+|..+..+++|++|+|++|... .+| .+..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 57889999999988888765 788899999999988888888888999999999988766 555 588888999999998
Q ss_pred CCCchhhhhhccC---------CCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCC
Q 036772 124 CASLIEIHSSIQH---------LNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETA 193 (583)
Q Consensus 124 ~~~l~~~~~~i~~---------l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~ 193 (583)
|.....+|..++. +++|+.|++++| .++.+|..+ .+++|++|++++ |.
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~---------------------N~ 217 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN---------------------SP 217 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEES---------------------SC
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccC---------------------CC
Confidence 8888777776654 677777777664 445666554 455555555544 56
Q ss_pred CccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEE
Q 036772 194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMS 273 (583)
Q Consensus 194 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~ 273 (583)
++.+|..++.+++|++|++++|.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.+..
T Consensus 218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------ 291 (328)
T 4fcg_A 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS------ 291 (328)
T ss_dssp CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC------
T ss_pred CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh------
Confidence 66777778888899999999888888888888888999999999988888888888888887777776665433
Q ss_pred eccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772 274 LVDCGITELPESLGRSPSLKFLNLAENDFEKI 305 (583)
Q Consensus 274 L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 305 (583)
.+|..++.+++|+.+++..+.+..+
T Consensus 292 -------~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 292 -------RLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp -------CCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred -------hccHHHhhccCceEEeCCHHHHHHH
Confidence 3888888899999988887655544
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.6e-24 Score=220.15 Aligned_cols=247 Identities=20% Similarity=0.217 Sum_probs=178.8
Q ss_pred CCceEEEccCCChh---hhcccccCCCCccEEeccC-CCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCE
Q 036772 68 EHLVSLEMPHSNIE---QLWNGVQNLAALKRLNLSY-CKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVF 142 (583)
Q Consensus 68 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~ 142 (583)
.++++|+++++.+. .+|..+.++++|++|+|++ |.....+| .++.+++|++|++++|.....+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4777788888888888884 66665666 4788888888888887766677888888888888
Q ss_pred EEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccC---C-CcCEEeccCCCCc-cccccccCCCCccEEeeeCCC
Q 036772 143 LNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEIS---C-NIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCS 216 (583)
Q Consensus 143 L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~---~-~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~ 216 (583)
|++++|.....+|..+ .+++|++|++++|.....+|..+ . +|+.|++++|.++ .+|..++.++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888865444677666 77888888888765443444332 2 5667777777776 5666677776 8888887777
Q ss_pred CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEE
Q 036772 217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN 296 (583)
Q Consensus 217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 296 (583)
.....|..+..+++|++|++++|......|. +..+++|++|++++|.+.. .+|..+..+++|+.|+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-------------~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-------------TLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-------------CCCGGGGGCTTCCEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-------------cCChHHhcCcCCCEEE
Confidence 6666777777777888888877765544444 5556666555555554432 3788888889999999
Q ss_pred ccCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772 297 LAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 297 Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
+++|.++ .+|.. +.+++|+.|++++|+.+...|
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 9999888 66654 788889999998887665433
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.1e-22 Score=222.06 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=127.2
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCAS 126 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~ 126 (583)
+++.|+++++.++.+|..+. ++|++|++++|+++.+|. .+++|++|+|++|. ++.+|. .+++|++|++++|..
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCcC
Confidence 34555555555555544332 445555555555554444 34445555555543 223333 344555555554432
Q ss_pred chhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCC
Q 036772 127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSR 206 (583)
Q Consensus 127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 206 (583)
..+|. .+++|+.|++++| .++.+|.. +++|++|++++| .+..+|..+.+|+.|++++|.++.+| ..+++
T Consensus 114 -~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~ 182 (622)
T 3g06_A 114 -THLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSG 182 (622)
T ss_dssp -CCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred -CCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence 22222 3444555555442 34444432 345555555553 33344444445555555555555554 23445
Q ss_pred ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCCCc
Q 036772 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCGIT 280 (583)
Q Consensus 207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~l~ 280 (583)
|+.|++++|... .+|.. +++|+.|++++|. +..+|.. +++|+.|++++|.+.. .|+.|++++|.++
T Consensus 183 L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 183 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT 254 (622)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CcEEECCCCCCC-CCCCc---cchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence 555555554332 23321 2445555555443 2233321 2445555555544432 2566666666666
Q ss_pred ccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772 281 ELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 281 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~ 324 (583)
.+|. .+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus 255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence 6766 5677888888888888888777788888888887774
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=216.09 Aligned_cols=261 Identities=20% Similarity=0.192 Sum_probs=186.3
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
.....+.+++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|+|++|......+ .+..+++|++|++++|
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 45568889999999998654 589999999999998876 68999999999999997665555 4899999999999998
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCC--cC-CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL 197 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l 197 (583)
......+..++.+++|++|++++| .++.+|. .+ .+++|++|++++|..+..++. ...+|++|++++|.++.+
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 755444445899999999999984 6777877 44 799999999999865555432 234566677777777655
Q ss_pred -cccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccC---CCCcccEEEccCCccccCccEE
Q 036772 198 -PSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIG---NLESLKIMLANETAISQNLVDM 272 (583)
Q Consensus 198 -p~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~---~l~~L~~L~l~~~~i~~~L~~L 272 (583)
|..++.+++|++|++++|.. ..+|. .+..+++|++|++++|......+..+. .... ++.+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~--------------l~~l 254 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL--------------IKKF 254 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC--------------CCEE
T ss_pred CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccch--------------hhcc
Confidence 55677777777777777654 33333 233466777777777654433222221 1222 3334
Q ss_pred EeccCCCc-----ccCccCCCCCCCCEEEccCCCCcccChhh-hccCccccccccccc
Q 036772 273 SLVDCGIT-----ELPESLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCK 324 (583)
Q Consensus 273 ~L~~~~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~ 324 (583)
+++++.+. .+|..+..+++|+.|++++|.++.+|..+ +.+++|+.|++++|+
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 44444333 36777778888888888888888888764 778888888888773
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.1e-23 Score=211.96 Aligned_cols=245 Identities=17% Similarity=0.191 Sum_probs=199.7
Q ss_pred CCccEEeccCCCCCC--CCC-CCCCCCCcCEEeeeC-CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccE
Q 036772 91 AALKRLNLSYCKQLS--RIP-DLSLALNLEWLDLVG-CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKV 165 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~--~~p-~l~~l~~L~~L~L~~-~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 165 (583)
.+++.|+|++|.... .+| .+..+++|++|++++ +.....+|..++.+++|++|++++|.....+|..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999998776 566 589999999999996 66666889999999999999999965555788877 8999999
Q ss_pred EEecCCCCcccccc---cCCCcCEEeccCCCCc-cccccccCCC-CccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 166 LYLGGCSNLKRFLE---ISCNIENLDLSETAIE-ELPSSIGNLS-RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 166 L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
|++++|.....+|. .+++|++|++++|.++ .+|..++.++ +|+.|++++|.....+|..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999764434443 4578999999999998 7888888888 999999999887778888888887 9999999988
Q ss_pred CCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhhhccCcccccc
Q 036772 241 KLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLT 319 (583)
Q Consensus 241 ~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~ 319 (583)
..+..|..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF--------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC--------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee--------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 777788888888888888777776543 4445788999999999999998 8899999999999999
Q ss_pred cccccccccCCCCCCCCeeeeeCCcCcccccCcccccccccccce
Q 036772 320 LQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQ 364 (583)
Q Consensus 320 L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~ 364 (583)
+++|+--..+|. ...++.++.+.+.+|+...
T Consensus 275 Ls~N~l~~~ip~--------------~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 275 VSFNNLCGEIPQ--------------GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp CCSSEEEEECCC--------------STTGGGSCGGGTCSSSEEE
T ss_pred CcCCcccccCCC--------------CccccccChHHhcCCCCcc
Confidence 999964446653 2445566667666665443
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=7.1e-22 Score=217.78 Aligned_cols=262 Identities=23% Similarity=0.259 Sum_probs=213.0
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 95 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~ 95 (583)
.+++.|+++++. ...+|..+. ++|++|++++|.++.+|. .+++|++|++++|+++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~------L~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESG------LTTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSC------CSCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCCcEEEecCCC------cCccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 368899998884 346776553 689999999999999998 67899999999999999887 7899999
Q ss_pred EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772 96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK 175 (583)
Q Consensus 96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~ 175 (583)
|+|++|.. ..+|. .+++|+.|++++|. +..+|.. +++|++|++++| .++.+|. .+++|+.|++++| .+.
T Consensus 106 L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~ 174 (622)
T 3g06_A 106 LSIFSNPL-THLPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNN-QLT 174 (622)
T ss_dssp EEECSCCC-CCCCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCS
T ss_pred EECcCCcC-CCCCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCC-CCC
Confidence 99999954 44555 67899999999976 4456653 589999999985 6777775 4678999999985 566
Q ss_pred cccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcc
Q 036772 176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL 255 (583)
Q Consensus 176 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 255 (583)
.+|..+.+|+.|++++|.++.+|.. +++|+.|++++|... .+|.. +++|++|++++|. +..+| ..+++|
T Consensus 175 ~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~-L~~lp---~~l~~L 243 (622)
T 3g06_A 175 SLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR-LTSLP---VLPSEL 243 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSC-CSCCC---CCCTTC
T ss_pred CCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCc-cCcCC---CCCCcC
Confidence 6787788999999999999998863 478999999987654 55543 4789999999974 44566 456889
Q ss_pred cEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhhhccC
Q 036772 256 KIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQLS 313 (583)
Q Consensus 256 ~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~ 313 (583)
+.|++++|.+.. .|+.|++++|.++.+|..+..+++|+.|+|++|.++ ..|..+..++
T Consensus 244 ~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999998875 399999999999999999999999999999999998 4455454443
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=8.7e-22 Score=210.43 Aligned_cols=241 Identities=21% Similarity=0.208 Sum_probs=181.7
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
...+.++.++..++.+|..+ +++|++|++++|+++.++ ..+.++++|+.|+|++|......+ .|..+++|++|+|++
T Consensus 54 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 54 NQFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35677888888899998754 468999999999998774 558899999999999997665544 488899999999999
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL 197 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l 197 (583)
|......+..++.+++|++|+|++| .++.+|... .+++|++|++++|..+..++. .+.+|+.|++++|.++.+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 8755444456888999999999884 566776643 799999999999888776654 346788888888888877
Q ss_pred cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772 198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277 (583)
Q Consensus 198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~ 277 (583)
|. +..+++|+.|++++|......|..+.++++|++|++++|......|..+..+++|+.|++++|.+.
T Consensus 212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------- 279 (452)
T 3zyi_A 212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS----------- 279 (452)
T ss_dssp CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----------
T ss_pred cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-----------
Confidence 64 777888888888887776666777888888888888877666555666666666666555555443
Q ss_pred CCcccC-ccCCCCCCCCEEEccCCCCc
Q 036772 278 GITELP-ESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 278 ~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 303 (583)
.+| ..+..+++|+.|+|++|.+.
T Consensus 280 ---~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 280 ---SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ---CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ---ccChHHhccccCCCEEEccCCCcC
Confidence 344 34566777777777777654
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=7.3e-22 Score=219.45 Aligned_cols=131 Identities=24% Similarity=0.181 Sum_probs=108.1
Q ss_pred ccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC-CCCCCCCc
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP-DLSLALNL 116 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L 116 (583)
+..+|.++++|++++|.++.+|+. | .+++|++|+|++|+++.++.+ |.++++|++|+|++|+.....+ .|.++++|
T Consensus 47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 344678999999999999999864 5 899999999999999999765 8999999999999997544333 38999999
Q ss_pred CEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCc--CCCcC-CCCCccEEEecCCC
Q 036772 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKS--LPTGI-NLDSLKVLYLGGCS 172 (583)
Q Consensus 117 ~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~ 172 (583)
++|+|++|......+..++++++|++|++++| .++. +|..+ .+++|++|++++|.
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 99999998755444457899999999999995 4443 45555 78999999998864
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=208.91 Aligned_cols=241 Identities=22% Similarity=0.214 Sum_probs=168.0
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
...+.++.++..++.+|..+. ++++.|++++|+++.++ ..+.++++|++|+|++|......+ .|..+++|++|+|++
T Consensus 43 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 43 NQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 356788888888888887553 68899999999988776 458889999999999986554443 488889999999998
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL 197 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l 197 (583)
|......+..+..+++|+.|+|++| .++.+|.. + .+++|++|++++|..+..++. .+.+|+.|++++|.++.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 7654433456888999999999884 56666653 3 788999999988777766553 245677777777777777
Q ss_pred cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772 198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277 (583)
Q Consensus 198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~ 277 (583)
|. +..+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------- 268 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT----------- 268 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-----------
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-----------
Confidence 64 667777777777777665555666677777777777766555444555555555555444444333
Q ss_pred CCcccC-ccCCCCCCCCEEEccCCCCc
Q 036772 278 GITELP-ESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 278 ~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 303 (583)
.+| ..+..+++|+.|+|++|.+.
T Consensus 269 ---~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 269 ---LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ---CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ---ccChhHhccccCCCEEEcCCCCcc
Confidence 233 33455666666666666543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=5e-22 Score=200.88 Aligned_cols=239 Identities=25% Similarity=0.299 Sum_probs=156.4
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCC---CCCCCCCCCcCEEeeeCC
Q 036772 49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSR---IPDLSLALNLEWLDLVGC 124 (583)
Q Consensus 49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~---~p~l~~l~~L~~L~L~~~ 124 (583)
+.++++++.++.+|..+ +++|++|++++|.++.++.. +.++++|++|+|++|..... .+.+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 45566666666666543 24666666666666666654 46666677777766654322 123445666777777665
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCC--cC-CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCcc--
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIEE-- 196 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~~-- 196 (583)
. +..++..+..+++|++|++++| .++.++. .+ .+++|++|++++|......+. ...+|+.|++++|.++.
T Consensus 89 ~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred c-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 4 3345555666777777777663 4444443 23 567777777776643333222 23567777777777764
Q ss_pred ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEecc
Q 036772 197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD 276 (583)
Q Consensus 197 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~ 276 (583)
+|..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+...
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------- 238 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-------- 238 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC--------
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc--------
Confidence 677788888888888888877666677888888888888888776555555677777777776666655431
Q ss_pred CCCcccCccCCCCC-CCCEEEccCCCCc
Q 036772 277 CGITELPESLGRSP-SLKFLNLAENDFE 303 (583)
Q Consensus 277 ~~l~~lp~~l~~l~-~L~~L~Ls~n~l~ 303 (583)
.|..+..++ +|+.|++++|.++
T Consensus 239 -----~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 239 -----KKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp -----SSSSCCCCCTTCCEEECTTCCEE
T ss_pred -----CHHHHHhhhccCCEEEccCCCee
Confidence 456677774 8999999999876
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=1.4e-22 Score=206.18 Aligned_cols=233 Identities=19% Similarity=0.136 Sum_probs=125.0
Q ss_pred CCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772 89 NLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY 167 (583)
Q Consensus 89 ~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 167 (583)
.+++|+.|+|++|......| .+..+++|++|+|++|......+ +..+++|++|++++| .++.++ ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL---VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc---CCCCcCEEE
Confidence 34444444444443333222 24444444444444443322211 444444555555442 233322 124455555
Q ss_pred ecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccc-cCCCCCcEEEccCCCCCCcc
Q 036772 168 LGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSL-CNLKSLQYLFLSGCLKLEKL 245 (583)
Q Consensus 168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~l 245 (583)
+++|..-...+..+.+|+.|++++|.++.+++ .++.+++|++|++++|......+..+ ..+++|++|++++|... .+
T Consensus 106 l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 184 (317)
T 3o53_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184 (317)
T ss_dssp CCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EE
T ss_pred CCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cc
Confidence 55443333333334445555555555554432 34445555555555554443333333 24455555555554322 22
Q ss_pred ccccCCCCcccEEEccCCccccC---------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc--ccChhhhccCc
Q 036772 246 PEEIGNLESLKIMLANETAISQN---------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSN 314 (583)
Q Consensus 246 p~~l~~l~~L~~L~l~~~~i~~~---------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~ 314 (583)
+. ...+++|+.|++++|.+... |+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+++
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 21 12345555555555544321 56666666667778888999999999999999988 77888899999
Q ss_pred ccccccccccccccC
Q 036772 315 LLFLTLQNCKRLQSL 329 (583)
Q Consensus 315 L~~L~L~~c~~L~~l 329 (583)
|+.|++.+++.++..
T Consensus 264 L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred ceEEECCCchhccCC
Confidence 999999988776654
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=2.2e-24 Score=230.85 Aligned_cols=302 Identities=19% Similarity=0.204 Sum_probs=193.1
Q ss_pred CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-----CCCCCC-CCCCceEEEccCCChhhh-c-ccc
Q 036772 16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-----SLPSKN-IPEHLVSLEMPHSNIEQL-W-NGV 87 (583)
Q Consensus 16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~l~~l-~-~~~ 87 (583)
++|+.|+++++.+ ........+..+ ++|++|++++|.+. .++..+ .+++|++|++++|.+... + .-.
T Consensus 3 ~~l~~L~Ls~~~l----~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEEL----SDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCCC----CHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred ccceehhhhhccc----CchhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 4577888877643 222222335555 47888888888876 334433 567788888888877642 1 112
Q ss_pred cCCC----CccEEeccCCCCCC----CCC-CCCCCCCcCEEeeeCCCCchhhhhhc-----cCCCCCCEEEccCCCCCCc
Q 036772 88 QNLA----ALKRLNLSYCKQLS----RIP-DLSLALNLEWLDLVGCASLIEIHSSI-----QHLNKLVFLNLGRCISLKS 153 (583)
Q Consensus 88 ~~l~----~L~~L~Ls~~~~l~----~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i-----~~l~~L~~L~L~~c~~l~~ 153 (583)
..++ +|++|+|++|.... .++ .+..+++|++|++++|......+..+ ...++|++|++++|. ++.
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 156 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA 156 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCH
Confidence 2333 68888888886543 223 46777888888888877543333322 235678888888763 332
Q ss_pred -----CCCcC-CCCCccEEEecCCCCccc----ccc----cCCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeC
Q 036772 154 -----LPTGI-NLDSLKVLYLGGCSNLKR----FLE----ISCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTN 214 (583)
Q Consensus 154 -----lp~~~-~l~~L~~L~L~~c~~l~~----~~~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~ 214 (583)
++..+ .+++|++|++++|..-.. +.. ..++|+.|++++|.++. ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 23323 567888888888763221 111 23478888888888775 566677788888888888
Q ss_pred CCCCcc----c-cccccCCCCCcEEEccCCCCCCc----cccccCCCCcccEEEccCCccc---------------cCcc
Q 036772 215 CSRLKS----V-SNSLCNLKSLQYLFLSGCLKLEK----LPEEIGNLESLKIMLANETAIS---------------QNLV 270 (583)
Q Consensus 215 ~~~l~~----l-p~~l~~l~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~---------------~~L~ 270 (583)
|..... + +.....+++|++|++++|..... ++..+..+++|+.|++++|.+. ..|+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 316 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE 316 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence 754332 1 22233577888888888754432 5666777788888888887764 2478
Q ss_pred EEEeccCCCcc-----cCccCCCCCCCCEEEccCCCCccc-Chhhhc-----cCcccccccccc
Q 036772 271 DMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKI-PSSIKQ-----LSNLLFLTLQNC 323 (583)
Q Consensus 271 ~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~-----l~~L~~L~L~~c 323 (583)
.|++++|.+++ ++..+..+++|++|++++|.++.. +..+.. .++|+.|++++|
T Consensus 317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 88888887765 455566778888888888877633 222221 567888888877
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=1.6e-21 Score=195.09 Aligned_cols=215 Identities=21% Similarity=0.194 Sum_probs=122.6
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCA 125 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~ 125 (583)
-+.++.++..++.+|..+ +++|++|++++|.++.++. .+..+++|++|+|++|......| .+..+++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 356777777777777543 4677777777777777664 46777777777777775544434 46777777777777776
Q ss_pred Cchhh-hhhccCCCCCCEEEccCCCCCCcC-CCcC-CCCCccEEEecCCCCccccc----ccCCCcCEEeccCCCCcccc
Q 036772 126 SLIEI-HSSIQHLNKLVFLNLGRCISLKSL-PTGI-NLDSLKVLYLGGCSNLKRFL----EISCNIENLDLSETAIEELP 198 (583)
Q Consensus 126 ~l~~~-~~~i~~l~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~L~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp 198 (583)
.+..+ +..+..+++|++|++++|. ++.+ |..+ .+++|++|++++|.. ..++ ..+.+|+.|++++|.++.+|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccC
Confidence 44444 5567777777777777743 3334 3334 566666666666432 1111 11234444444445555444
Q ss_pred cc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772 199 SS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI 265 (583)
Q Consensus 199 ~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i 265 (583)
.. +..+++|+.|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 32 45555555555555554444445555555555555555443333333344444444444444443
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=197.31 Aligned_cols=234 Identities=20% Similarity=0.238 Sum_probs=141.2
Q ss_pred eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-C-CCCCCCcCEEeeeCCCCch--hhhhhccCCCCCCEEEcc
Q 036772 71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-D-LSLALNLEWLDLVGCASLI--EIHSSIQHLNKLVFLNLG 146 (583)
Q Consensus 71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~ 146 (583)
+.++.+++.++.+|.++. ++|++|+|++|... .+| . +..+++|++|++++|.... ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 478999999999998654 79999999999755 555 3 7899999999999987542 235667789999999999
Q ss_pred CCCCCCcCCCcC-CCCCccEEEecCCCCccccc-----ccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCc
Q 036772 147 RCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL-----EISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLK 219 (583)
Q Consensus 147 ~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~-----~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~ 219 (583)
+| .+..+|..+ .+++|++|++++|. +..++ ..+.+|+.|++++|.++.. +..+..+++|++|++++|....
T Consensus 87 ~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SC-SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CC-ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 95 566777766 78888888888753 22211 2234555555555555533 2234555555555555554433
Q ss_pred -cccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEc
Q 036772 220 -SVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNL 297 (583)
Q Consensus 220 -~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L 297 (583)
.+|..+..+++|++|++++|......|..+..+++|+.|++++|.+. +++ ..+..+++|+.|++
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--------------SLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--------------BCCSGGGTTCTTCCEEEC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--------------ccChhhccCcccCCEeEC
Confidence 24445555555555555555443333444444444444444333322 232 23445555555555
Q ss_pred cCCCCcc-cChhhhccC-cccccccccc
Q 036772 298 AENDFEK-IPSSIKQLS-NLLFLTLQNC 323 (583)
Q Consensus 298 s~n~l~~-lp~~i~~l~-~L~~L~L~~c 323 (583)
++|.++. .|..+..++ +|+.|++++|
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 5555543 233344442 4555555544
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.2e-20 Score=200.75 Aligned_cols=229 Identities=19% Similarity=0.177 Sum_probs=194.1
Q ss_pred eecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CC
Q 036772 35 VRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DL 110 (583)
Q Consensus 35 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l 110 (583)
..+|.+ ++.++++|++++|.++.++.. | .+++|++|++++|.++.++ ..+.++++|++|+|++|......+ .+
T Consensus 56 ~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 56 REVPDG---ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp SSCCSC---CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCCCC---CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 345544 457899999999999988754 4 8999999999999999876 458999999999999997654444 48
Q ss_pred CCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc--CCCcCE
Q 036772 111 SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI--SCNIEN 186 (583)
Q Consensus 111 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~--~~~L~~ 186 (583)
..+++|++|+|++|......+..+..+++|+.|++++|+.+..++... .+++|++|++++| .+..+|.. +.+|+.
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 211 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDE 211 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCE
Confidence 999999999999987655445678999999999999999999988754 8999999999997 45566643 458999
Q ss_pred EeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772 187 LDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI 265 (583)
Q Consensus 187 L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i 265 (583)
|++++|.++.+ |..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999987 56799999999999999988777788899999999999999877666666788999999999999986
Q ss_pred cc
Q 036772 266 SQ 267 (583)
Q Consensus 266 ~~ 267 (583)
.-
T Consensus 292 ~C 293 (440)
T 3zyj_A 292 NC 293 (440)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.3e-20 Score=201.24 Aligned_cols=224 Identities=21% Similarity=0.182 Sum_probs=190.9
Q ss_pred ccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCE
Q 036772 43 SFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEW 118 (583)
Q Consensus 43 ~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~ 118 (583)
.+|.+|++|++++|.++.++.. | .+++|++|++++|.++.++ ..+.++++|++|+|++|......+. +..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 3457999999999999988644 4 8999999999999999876 5589999999999999976655444 889999999
Q ss_pred EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccc--cCCCcCEEeccCCCC
Q 036772 119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLE--ISCNIENLDLSETAI 194 (583)
Q Consensus 119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~--~~~~L~~L~L~~~~i 194 (583)
|+|++|......+..+..+++|+.|++++|+.++.++... .+++|++|++++|. +..+|. .+.+|+.|++++|.+
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcC
Confidence 9999987654444578999999999999999999998754 89999999999974 445553 346899999999999
Q ss_pred ccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc
Q 036772 195 EEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ 267 (583)
Q Consensus 195 ~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~ 267 (583)
+.+ |..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+.-
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 987 5679999999999999998887788889999999999999987665555667889999999999998653
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=199.61 Aligned_cols=267 Identities=15% Similarity=0.140 Sum_probs=204.9
Q ss_pred CCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhc-ccccCCC
Q 036772 15 MRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLW-NGVQNLA 91 (583)
Q Consensus 15 m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~ 91 (583)
+......+.+++ ....+|.++ +++|++|++++|.++.+|. .+ .+++|++|++++|.++.++ ..+.+++
T Consensus 30 C~~~~~c~~~~~------~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 30 CDRNGICKGSSG------SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp ECTTSEEECCST------TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCeEeeCCCC------Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 344444555554 344566543 4689999999999999987 34 8999999999999999875 4589999
Q ss_pred CccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEE
Q 036772 92 ALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVL 166 (583)
Q Consensus 92 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L 166 (583)
+|++|+|++|......+. +..+++|++|++++|... .++. .++.+++|+.|++++|..++.++. .+ .+++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999999976544444 889999999999998644 5555 788999999999999877777754 44 89999999
Q ss_pred EecCCCCcccccccC---CCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccc---cCCCCCcEEEccCC
Q 036772 167 YLGGCSNLKRFLEIS---CNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSL---CNLKSLQYLFLSGC 239 (583)
Q Consensus 167 ~L~~c~~l~~~~~~~---~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~l~~c 239 (583)
++++|......|..+ .+|++|++++|.++.+|.. +..+++|+.|++++|......+..+ .....++.++++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 999986554445444 5788899999999988875 4468999999999988765443333 34667889999887
Q ss_pred CCCC----ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCccc
Q 036772 240 LKLE----KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKI 305 (583)
Q Consensus 240 ~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l 305 (583)
.... .+|+.+..+++|+.|++++|.+ +.+|.. +..+++|++|++++|.+..-
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQL--------------KSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCC--------------CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 6543 4677778888877766666554 458876 48999999999999998743
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=2.3e-23 Score=222.93 Aligned_cols=308 Identities=17% Similarity=0.155 Sum_probs=229.3
Q ss_pred CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCC--CCC-CCC----CceEEEccCCChh-----
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLP--SKN-IPE----HLVSLEMPHSNIE----- 81 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp--~~~-~~~----~L~~L~L~~~~l~----- 81 (583)
.+++|+.|++++|.+ .......++..+..+ ++|++|++++|.+.... ..+ .++ +|++|++++|.+.
T Consensus 26 ~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGL-TEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHTTCSEEEEESSCC-CHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred hcCCccEEEccCCCC-CHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 678999999999864 111112456677777 58999999999875421 111 223 7999999999988
Q ss_pred hhcccccCCCCccEEeccCCCCCCCCC-C-----CCCCCCcCEEeeeCCCCch----hhhhhccCCCCCCEEEccCCCCC
Q 036772 82 QLWNGVQNLAALKRLNLSYCKQLSRIP-D-----LSLALNLEWLDLVGCASLI----EIHSSIQHLNKLVFLNLGRCISL 151 (583)
Q Consensus 82 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-----l~~l~~L~~L~L~~~~~l~----~~~~~i~~l~~L~~L~L~~c~~l 151 (583)
.++..+..+++|++|+|++|......+ . ....++|++|++++|.... .++..+..+++|+.|++++|. +
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i 182 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-I 182 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-c
Confidence 467779999999999999997543211 1 2345689999999997665 346677889999999999965 4
Q ss_pred CcCC-----CcC--CCCCccEEEecCCCCccc----ccc---cCCCcCEEeccCCCCccc------cccccCCCCccEEe
Q 036772 152 KSLP-----TGI--NLDSLKVLYLGGCSNLKR----FLE---ISCNIENLDLSETAIEEL------PSSIGNLSRLVRLD 211 (583)
Q Consensus 152 ~~lp-----~~~--~l~~L~~L~L~~c~~l~~----~~~---~~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L~ 211 (583)
+... ..+ ..++|++|++++|..-.. ++. ..++|++|++++|.++.. +.....+++|++|+
T Consensus 183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence 4321 111 266999999999854321 333 457999999999988753 22234689999999
Q ss_pred eeCCCCCcc----ccccccCCCCCcEEEccCCCCCCccccccC-----CCCcccEEEccCCcccc--------------C
Q 036772 212 LTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEKLPEEIG-----NLESLKIMLANETAISQ--------------N 268 (583)
Q Consensus 212 L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~-----~l~~L~~L~l~~~~i~~--------------~ 268 (583)
+++|..... ++..+.++++|++|++++|......+..+. ..++|+.|++++|.+.. .
T Consensus 263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 999976543 677788899999999999865433222222 23699999999998763 4
Q ss_pred ccEEEeccCCCccc-C----ccCC-CCCCCCEEEccCCCCc-----ccChhhhccCccccccccccc
Q 036772 269 LVDMSLVDCGITEL-P----ESLG-RSPSLKFLNLAENDFE-----KIPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 269 L~~L~L~~~~l~~l-p----~~l~-~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 324 (583)
|+.|++++|.+.+. + ..+. ..++|++|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 99999999998872 2 2232 2789999999999998 688889999999999999983
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=4.1e-20 Score=184.90 Aligned_cols=218 Identities=23% Similarity=0.277 Sum_probs=140.8
Q ss_pred ceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC
Q 036772 70 LVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 70 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c 148 (583)
-++++.+++.++.+|.++ .++|++|++++|......+ .+..+++|++|++++|......+..++.+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 368899999999998755 5799999999997655444 4888999999999998765555778899999999999997
Q ss_pred CCCCcC-CCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccc
Q 036772 149 ISLKSL-PTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSL 225 (583)
Q Consensus 149 ~~l~~l-p~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l 225 (583)
..++.+ |..+ .+++|++|++++|. ++.+ |..+..+++|++|++++|......+..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCG---------------------LQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSC---------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCc---------------------CCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 667777 4444 67778887777753 3333 2334555555555555554443333445
Q ss_pred cCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772 226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI 305 (583)
Q Consensus 226 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 305 (583)
..+++|++|++++|......+..+..+++|+.|++++|.+... .|..+..+++|+.|++++|.++.+
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-------------CHhHccCcccccEeeCCCCcCCcC
Confidence 5555666666655543322223355555555444444433220 245566666666666666666665
Q ss_pred Ch-hhhccCcccccccccc
Q 036772 306 PS-SIKQLSNLLFLTLQNC 323 (583)
Q Consensus 306 p~-~i~~l~~L~~L~L~~c 323 (583)
|. .+..+++|+.|++++|
T Consensus 217 ~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp CHHHHTTCTTCCEEECCSS
T ss_pred CHHHcccCcccCEEeccCC
Confidence 53 3566666666666665
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=9.4e-21 Score=204.11 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=135.4
Q ss_pred CCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772 68 EHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146 (583)
Q Consensus 68 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 146 (583)
++|++|++++|.+..++ ..+..+++|++|+|++|......| +..+++|++|+|++|.. ..++ ..++|+.|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEECc
Confidence 36777777777766654 346667777777777765443333 66666777777766542 2222 23666666666
Q ss_pred CCCCCCcCCCcCCCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCccc-ccccc-CCCCccEEeeeCCCCCccc
Q 036772 147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEEL-PSSIG-NLSRLVRLDLTNCSRLKSV 221 (583)
Q Consensus 147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~l-p~~i~-~l~~L~~L~L~~~~~l~~l 221 (583)
+| .+..++.. .+++|++|++++|..-...| ..+++|+.|++++|.++.+ |..+. .+++|+.|++++|.....
T Consensus 108 ~N-~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NN-NISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SS-CCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CC-cCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 64 33333321 34556666666654332222 1234555555555555542 33333 455555555555543322
Q ss_pred cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCC
Q 036772 222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND 301 (583)
Q Consensus 222 p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~ 301 (583)
|. ...+++|++|++++|... .+|..+..+++| +.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L--------------~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV--------------TWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTC--------------SEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCc--------------cEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 21 223555555555554332 333334444444 45555555566688888889999999999999
Q ss_pred Cc--ccChhhhccCccccccccccccc
Q 036772 302 FE--KIPSSIKQLSNLLFLTLQNCKRL 326 (583)
Q Consensus 302 l~--~lp~~i~~l~~L~~L~L~~c~~L 326 (583)
+. .+|..+..++.|+.+++..+..+
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEeccccccc
Confidence 87 77788888888888888755443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=5.4e-21 Score=194.45 Aligned_cols=226 Identities=18% Similarity=0.129 Sum_probs=162.2
Q ss_pred ccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCC
Q 036772 93 LKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC 171 (583)
Q Consensus 93 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c 171 (583)
++.++++.+........ +..+++|++|+|++|......+..++.+++|+.|+|++| .+...+....+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCC
Confidence 44445554432222222 445679999999999877766788999999999999995 4554444338999999999996
Q ss_pred CCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc-C
Q 036772 172 SNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI-G 250 (583)
Q Consensus 172 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l-~ 250 (583)
. +..++. .++|+.|++++|.++.++.. .+++|+.|++++|......+..+..+++|++|++++|......+..+ .
T Consensus 91 ~-l~~l~~-~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 91 Y-VQELLV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp E-EEEEEE-CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred c-cccccC-CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 4 555553 38999999999999988753 47899999999998877777788899999999999987766656655 4
Q ss_pred CCCcccEEEccCCcccc--------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccc
Q 036772 251 NLESLKIMLANETAISQ--------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN 322 (583)
Q Consensus 251 ~l~~L~~L~l~~~~i~~--------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~ 322 (583)
.+++|+.|++++|.+.. .|+.|++++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence 68888888888887653 2555555555555555555555555555555555555555555555555555555
Q ss_pred c
Q 036772 323 C 323 (583)
Q Consensus 323 c 323 (583)
|
T Consensus 247 N 247 (317)
T 3o53_A 247 N 247 (317)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.9e-21 Score=196.05 Aligned_cols=233 Identities=18% Similarity=0.201 Sum_probs=144.0
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhh--hccccc-------CCCCccEEeccCCCCCCCCCC-C--CCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ--LWNGVQ-------NLAALKRLNLSYCKQLSRIPD-L--SLA 113 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-l--~~l 113 (583)
.+|++|+++++.+ .+|..+. ..|++|++++|.+.. ++..+. ++++|++|+|++|......|. + ..+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4688888888888 7776442 128888999988864 444443 789999999999988777774 4 889
Q ss_pred CCcCEEeeeCCCCchhhhhhccCC-----CCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCccc--cc-----c
Q 036772 114 LNLEWLDLVGCASLIEIHSSIQHL-----NKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKR--FL-----E 179 (583)
Q Consensus 114 ~~L~~L~L~~~~~l~~~~~~i~~l-----~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--~~-----~ 179 (583)
++|++|++++|..... |..++.+ ++|++|++++|. ++.++ ..+ .+++|++|++++|..... ++ .
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 9999999999875554 6666655 899999999854 55555 555 788899999888764332 11 2
Q ss_pred cCCCcCEEeccCCCCccccc---c-ccCCCCccEEeeeCCCCCcccc-ccccCCCCCcEEEccCCCCCCccccccCCCCc
Q 036772 180 ISCNIENLDLSETAIEELPS---S-IGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLES 254 (583)
Q Consensus 180 ~~~~L~~L~L~~~~i~~lp~---~-i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~ 254 (583)
.+.+|++|++++|.++.++. . +..+++|++|++++|......| ..+..+++|++|++++|.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-------------- 264 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-------------- 264 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC--------------
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc--------------
Confidence 33455555555555553221 1 2344455555555544333322 222333444444444432
Q ss_pred ccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 255 LKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 255 L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
++++|..+. ++|++|++++|+++.+|. +..+++|+.|+++++
T Consensus 265 ------------------------l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 265 ------------------------LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ------------------------CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred ------------------------cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence 233444443 555555555555555554 555555555555554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=9.6e-22 Score=199.56 Aligned_cols=238 Identities=17% Similarity=0.155 Sum_probs=148.3
Q ss_pred CCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCc-hhhhhhcc-------CCCCCCEEEccCCCCCCcCCCcC-
Q 036772 89 NLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASL-IEIHSSIQ-------HLNKLVFLNLGRCISLKSLPTGI- 158 (583)
Q Consensus 89 ~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l-~~~~~~i~-------~l~~L~~L~L~~c~~l~~lp~~~- 158 (583)
..++|+.|++++|.. .+|. +... |+.|+|++|... ..++..+. .+++|++|++++|.....+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344555556666554 3332 2221 555555554431 12333332 56666666666654433555542
Q ss_pred --CCCCccEEEecCCCCcccccc---c-----CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcc--ccccc
Q 036772 159 --NLDSLKVLYLGGCSNLKRFLE---I-----SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKS--VSNSL 225 (583)
Q Consensus 159 --~l~~L~~L~L~~c~~l~~~~~---~-----~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp~~l 225 (583)
.+++|++|++++|..-. .|. . ..+|++|++++|.++.++ ..++.+++|++|++++|..... ++..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 46666666666643221 121 1 156777777777777776 5688888888888888876544 33344
Q ss_pred --cCCCCCcEEEccCCCCCC--ccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEcc
Q 036772 226 --CNLKSLQYLFLSGCLKLE--KLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLA 298 (583)
Q Consensus 226 --~~l~~L~~L~l~~c~~l~--~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls 298 (583)
..+++|++|++++|.... .++ ..+..+++|+.|++++|.+ ++.+ ..+..+++|++|+++
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL--------------RDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC--------------CSSCCCSCCCCCTTCCEEECT
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC--------------CcccchhhhhhcCCCCEEECC
Confidence 778888888888875442 222 2234556666666655554 4433 456678999999999
Q ss_pred CCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772 299 ENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 299 ~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~ 362 (583)
+|.++.+|..+. ++|+.|++++| +++.+|. +..+++|+.+.+.+|++
T Consensus 262 ~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--------------~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 262 FTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS--------------PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TSCCSSCCSSCC--SEEEEEECCSS-CCCSCCC--------------TTTSCEEEEEECTTCTT
T ss_pred CCccChhhhhcc--CCceEEECCCC-CCCCChh--------------HhhCCCCCEEeccCCCC
Confidence 999999998776 89999999998 5666552 45566677777777765
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=7.8e-20 Score=196.95 Aligned_cols=217 Identities=19% Similarity=0.136 Sum_probs=164.0
Q ss_pred ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccE
Q 036772 87 VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV 165 (583)
Q Consensus 87 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 165 (583)
...+++|+.|+|++|......| .+..+++|++|+|++|......+ ++.+++|++|+|++| .++.+|. .++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~ 103 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV---GPSIET 103 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE---CTTCCE
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC---CCCcCE
Confidence 3455689999999997766655 58899999999999987654444 889999999999985 5665553 378888
Q ss_pred EEecCCCCcccccccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCcccccccc-CCCCCcEEEccCCCCCC
Q 036772 166 LYLGGCSNLKRFLEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLC-NLKSLQYLFLSGCLKLE 243 (583)
Q Consensus 166 L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~c~~l~ 243 (583)
|++++|......+..+++|+.|++++|.++.+ |..++.+++|+.|++++|......|..+. .+++|++|++++|....
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 88888765555555667788888888888866 44577788888888888777666666665 67888888888876433
Q ss_pred ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 244 KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 244 ~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
. |. ...+++|+ .|++++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus 184 ~-~~-~~~l~~L~--------------~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 184 V-KG-QVVFAKLK--------------TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247 (487)
T ss_dssp E-EC-CCCCTTCC--------------EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred c-cc-cccCCCCC--------------EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence 2 22 22345544 45555555666888888999999999999999999999999999999999987
Q ss_pred cc
Q 036772 324 KR 325 (583)
Q Consensus 324 ~~ 325 (583)
+-
T Consensus 248 ~l 249 (487)
T 3oja_A 248 GF 249 (487)
T ss_dssp CB
T ss_pred CC
Confidence 53
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.1e-18 Score=173.65 Aligned_cols=217 Identities=22% Similarity=0.243 Sum_probs=122.8
Q ss_pred EEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCc
Q 036772 50 YFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASL 127 (583)
Q Consensus 50 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l 127 (583)
..+..+..+..+|..+ +++|++|++++|.++.++. .+.++++|++|+|++|......+ .+..+++|++|++++|...
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4555666777788754 3578888888888887765 57788888888888885544333 3677777777777776654
Q ss_pred hhhhhhccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcc--ccccccC
Q 036772 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEE--LPSSIGN 203 (583)
Q Consensus 128 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~--lp~~i~~ 203 (583)
...+..+..+++|+.|++++| .+..++. .+ .+++|++|++++ |.++. +|..++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH---------------------NLIQSFKLPEYFSN 147 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCS---------------------SCCCCCCCCGGGGG
T ss_pred ccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcC---------------------CccceecCchhhcc
Confidence 444456666667777766663 3333332 12 333333333333 33332 3444555
Q ss_pred CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC
Q 036772 204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP 283 (583)
Q Consensus 204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp 283 (583)
+++|++|++++|......+..+..+++|+ .|. ..|++++|.+..++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------------------~l~-------------l~L~ls~n~l~~~~ 193 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------------------LLN-------------LSLDLSLNPMNFIQ 193 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCT---------------------TCC-------------EEEECCSSCCCEEC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhcc---------------------ccc-------------eeeecCCCcccccC
Confidence 55555555555544333333333332222 000 02334444444455
Q ss_pred ccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccc
Q 036772 284 ESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNC 323 (583)
Q Consensus 284 ~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c 323 (583)
.......+|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus 194 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 4444445677777777776666554 356666666666665
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=2.6e-18 Score=172.25 Aligned_cols=198 Identities=25% Similarity=0.238 Sum_probs=123.0
Q ss_pred ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccE
Q 036772 87 VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV 165 (583)
Q Consensus 87 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 165 (583)
+.++++|+.++++++.. +.+| .+. ++|+.|+|++|......+..+..+++|+.|+|++| .++.++....+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCE
Confidence 34556666666666533 3333 232 46666666666654444566777777777777763 4444443333444444
Q ss_pred EEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc
Q 036772 166 LYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245 (583)
Q Consensus 166 L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l 245 (583)
|+ +++|.++.+|..+..+++|++|++++|......+..+.++++|++|++++|......
T Consensus 82 L~---------------------Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 82 LD---------------------LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp EE---------------------CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred EE---------------------CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 44 444556666666677777777777776655544566777777777777776554444
Q ss_pred ccccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 246 PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 246 p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
+..+..+++|+.|++++|.+ +.+|. .+..+++|+.|+|++|.++.+|..+..+.+|+.|++++|
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l--------------~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNL--------------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCC--------------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred hhhcccccCCCEEECCCCcC--------------CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 44456666666555555443 34554 346778888888888888888877777777777777766
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=2.4e-18 Score=171.12 Aligned_cols=200 Identities=23% Similarity=0.194 Sum_probs=141.8
Q ss_pred ccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCE
Q 036772 43 SFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEW 118 (583)
Q Consensus 43 ~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~ 118 (583)
.+|++|++|++++|.++.++. .+ .+++|++|++++|.++.++. .+..+++|++|+|++|......+ .+..+++|++
T Consensus 25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 346789999999999999886 34 78999999999999998875 58999999999999997666554 4899999999
Q ss_pred EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCc--CCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc
Q 036772 119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKS--LPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE 195 (583)
Q Consensus 119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~ 195 (583)
|++++|......+..++.+++|++|++++| .++. +|..+ .+++|++|++++ |.++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~---------------------N~l~ 162 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSS---------------------NKIQ 162 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCS---------------------SCCC
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCC---------------------CCCC
Confidence 999998766555557899999999999995 4444 45555 567777776666 4455
Q ss_pred cccc-cccCCCCcc----EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCcc
Q 036772 196 ELPS-SIGNLSRLV----RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLV 270 (583)
Q Consensus 196 ~lp~-~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~ 270 (583)
.++. .+..+++|+ .|++++|.... ++.......+|++|+
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~----------------------------------- 206 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELA----------------------------------- 206 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEE-----------------------------------
T ss_pred cCCHHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEE-----------------------------------
Confidence 4432 344444444 67777655432 222222222333333
Q ss_pred EEEeccCCCcccCc-cCCCCCCCCEEEccCCCCc
Q 036772 271 DMSLVDCGITELPE-SLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 271 ~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~ 303 (583)
+++|.++++|. .+..+++|+.|++++|.+.
T Consensus 207 ---L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 207 ---LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ---CCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ---CCCCceeecCHhHhcccccccEEEccCCccc
Confidence 33334444554 3577888888888888766
No 72
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=2.5e-20 Score=205.75 Aligned_cols=277 Identities=17% Similarity=0.112 Sum_probs=179.7
Q ss_pred CCccEEEecCCCCCCCC-----CCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC----CCCCCCCCC
Q 036772 46 NELRYFQWDGYPLKSLP-----SKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR----IPDLSLALN 115 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp-----~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~----~p~l~~l~~ 115 (583)
++|+.|+++++.+..+. ..+ .+++|++|+++++.+..++..+..+++|+.|+++....... ...+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 36666666666654222 111 45667777777776666666666677777777764322211 124566777
Q ss_pred cCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCC--CcC-CCCCccEEEecCCCCc---ccccccCCCcCEEec
Q 036772 116 LEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP--TGI-NLDSLKVLYLGGCSNL---KRFLEISCNIENLDL 189 (583)
Q Consensus 116 L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp--~~~-~l~~L~~L~L~~c~~l---~~~~~~~~~L~~L~L 189 (583)
|+.|+++++ ....++..+..+++|++|++++|. +.... ..+ .+++|++|+++++..- ..+....++|++|++
T Consensus 272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 888887774 345566777778888888888876 43211 112 6788888888743221 222344577888888
Q ss_pred cC-----------CCCcc--ccccccCCCCccEEeeeCCCCCccccccccC-CCCCcEEEccC---CCCCCcc------c
Q 036772 190 SE-----------TAIEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN-LKSLQYLFLSG---CLKLEKL------P 246 (583)
Q Consensus 190 ~~-----------~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~-l~~L~~L~l~~---c~~l~~l------p 246 (583)
++ +.++. ++.....+++|++|++..+......+..+.. +++|++|++++ |+.+... +
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 83 45542 3333456788888888665555444555554 78889998874 4455543 3
Q ss_pred cccCCCCcccEEEccCCc--cc-----------cCccEEEeccCCCcc--cCccCCCCCCCCEEEccCCCCc--ccChhh
Q 036772 247 EEIGNLESLKIMLANETA--IS-----------QNLVDMSLVDCGITE--LPESLGRSPSLKFLNLAENDFE--KIPSSI 309 (583)
Q Consensus 247 ~~l~~l~~L~~L~l~~~~--i~-----------~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i 309 (583)
..+..+++|+.|+++.+. +. ..|+.|++++|++++ ++..+..+++|+.|+|++|.++ .++..+
T Consensus 430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 346668889999886432 22 238889999888876 5566678889999999999876 355556
Q ss_pred hccCccccccccccc
Q 036772 310 KQLSNLLFLTLQNCK 324 (583)
Q Consensus 310 ~~l~~L~~L~L~~c~ 324 (583)
..+++|+.|++++|+
T Consensus 510 ~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHCSSCCEEEEESCB
T ss_pred HhcCccCeeECcCCc
Confidence 778899999999885
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-17 Score=165.02 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeee
Q 036772 45 FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLV 122 (583)
Q Consensus 45 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 122 (583)
...++.++++++.++.+|..+. ++|++|++++|+++.++. .+.++++|++|+|++|......+. +..+++|++|+++
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3467888998888888887543 678888888888887765 478888888888888865433333 5667777777777
Q ss_pred CCCCchhhhhhccCCCCCCEEEccC
Q 036772 123 GCASLIEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 123 ~~~~l~~~~~~i~~l~~L~~L~L~~ 147 (583)
+|......+..+..+++|+.|++++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCcCCcCCHhHcccccCCCEEECCC
Confidence 7654333333455666666666665
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=3.5e-18 Score=176.17 Aligned_cols=190 Identities=20% Similarity=0.234 Sum_probs=138.0
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGC 124 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~ 124 (583)
-+.++.+++.++++|..+ ++++++|+|++|+|+.++.+ |.++++|++|+|++|+....+| .|..+++|+++...++
T Consensus 11 ~~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TTEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CCEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 367888899999999876 57899999999999999875 8999999999999998877766 3788999887655544
Q ss_pred CCchhh-hhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc-----CCCcCEEeccCCCCcc
Q 036772 125 ASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI-----SCNIENLDLSETAIEE 196 (583)
Q Consensus 125 ~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~-----~~~L~~L~L~~~~i~~ 196 (583)
..+..+ +..++.+++|++|++++ +.++.+|... ...++..|++.++..+..++.. ...++.|++++|.++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 455555 56789999999999998 4567776644 6677888888887777665532 1245566777777766
Q ss_pred ccccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCC
Q 036772 197 LPSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGC 239 (583)
Q Consensus 197 lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c 239 (583)
+|..+....+|+.|++.+++.++.+|. .+..+++|++|++++|
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 666555555666666665555555543 3455555555555554
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.8e-19 Score=184.37 Aligned_cols=196 Identities=23% Similarity=0.286 Sum_probs=99.9
Q ss_pred CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC-CC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 68 EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR-IP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 68 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
++++.|++++|.+...+..+..+++|++|+|++|..... ++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 344444444444444443344445555555554432211 22 2344445555555554433344444445555555555
Q ss_pred cCCCCCCc--CCCcC-CCCCccEEEecCCCCccc--c---cccCC-CcCEEeccCCC--C--ccccccccCCCCccEEee
Q 036772 146 GRCISLKS--LPTGI-NLDSLKVLYLGGCSNLKR--F---LEISC-NIENLDLSETA--I--EELPSSIGNLSRLVRLDL 212 (583)
Q Consensus 146 ~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--~---~~~~~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~L 212 (583)
++|..++. ++..+ .+++|++|++++|..+.. + ....+ +|++|++++|. + ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 55433332 23222 445555555555422221 1 12234 55555555553 2 345666667778888888
Q ss_pred eCCCC-CccccccccCCCCCcEEEccCCCCCC-ccccccCCCCcccEEEccCC
Q 036772 213 TNCSR-LKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 213 ~~~~~-l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~ 263 (583)
++|.. ....+..+.++++|++|++++|..+. .....+.++++|+.|+++++
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 77773 34456667777888888888775221 11224556666666666655
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=7.9e-19 Score=174.36 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=18.8
Q ss_pred CCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772 286 LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
+..+++|+.|++++|.+. +.+++|+.|+++.+..-..+|
T Consensus 201 ~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 201 FDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred HhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence 445555555555555443 223345555555543333443
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=7.4e-18 Score=163.91 Aligned_cols=205 Identities=18% Similarity=0.175 Sum_probs=129.9
Q ss_pred hhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCCCc
Q 036772 80 IEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTG 157 (583)
Q Consensus 80 l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~ 157 (583)
++.+|. + .++|++|++++|......+ .+..+++|++|++++|..+..++. .+..+++|+.|++++|+.++.+|..
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 2 2367777777765443333 366666777777776653444443 5666666666666665555555543
Q ss_pred C--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCcc---EEeeeCCCCCcccc-ccccCCCCC
Q 036772 158 I--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLV---RLDLTNCSRLKSVS-NSLCNLKSL 231 (583)
Q Consensus 158 ~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~---~L~L~~~~~l~~lp-~~l~~l~~L 231 (583)
. .+++|++|++++ |.++.+|. +..+++|+ .|++++|..+..+| ..+.++++|
T Consensus 100 ~f~~l~~L~~L~l~~---------------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L 157 (239)
T 2xwt_C 100 ALKELPLLKFLGIFN---------------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157 (239)
T ss_dssp SEECCTTCCEEEEEE---------------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred HhCCCCCCCEEeCCC---------------------CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence 2 455555555554 55666665 66677776 88888883444444 457788888
Q ss_pred c-EEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCC-CCCCEEEccCCCCcccChh
Q 036772 232 Q-YLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRS-PSLKFLNLAENDFEKIPSS 308 (583)
Q Consensus 232 ~-~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~ 308 (583)
+ +|++++|... .+|......++|+.|++++|. .++.+| ..+..+ ++|+.|++++|.++.+|..
T Consensus 158 ~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~-------------~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK-------------YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCT-------------TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCC-------------CcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 8 8888887544 555543333555544444442 255565 567888 9999999999999999875
Q ss_pred hhccCcccccccccccc
Q 036772 309 IKQLSNLLFLTLQNCKR 325 (583)
Q Consensus 309 i~~l~~L~~L~L~~c~~ 325 (583)
.+++|+.|+++++..
T Consensus 224 --~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 --GLEHLKELIARNTWT 238 (239)
T ss_dssp --TCTTCSEEECTTC--
T ss_pred --HhccCceeeccCccC
Confidence 688899999887753
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.1e-17 Score=161.77 Aligned_cols=167 Identities=21% Similarity=0.197 Sum_probs=90.7
Q ss_pred CceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEcc
Q 036772 69 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLG 146 (583)
Q Consensus 69 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~ 146 (583)
+.+.++++++.++.+|..+. ++|+.|+|++|......+ .+..+++|++|++++|... .++ ..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 46677888887777776553 567777877776544333 3667777777777776543 333 334666667777766
Q ss_pred CCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccc
Q 036772 147 RCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSN 223 (583)
Q Consensus 147 ~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~ 223 (583)
+| .++.+|... .+++|++|++++ |.++.++. .++.+++|++|++++|......+.
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDR---------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCS---------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CC-cCCcCCHhHcccccCCCEEECCC---------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 63 344444332 344444444444 34444433 245566666666666544333333
Q ss_pred cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772 224 SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA 260 (583)
Q Consensus 224 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 260 (583)
.+..+++|++|++++|......+..+..+++|+.|++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred HccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 3455555555555554333322223444444443333
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=2.1e-17 Score=165.71 Aligned_cols=202 Identities=20% Similarity=0.164 Sum_probs=123.5
Q ss_pred ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL 119 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L 119 (583)
+..+ .+++.++++++.++++|..+. +++++|++++|.+..++ ..+..+++|++|+|++|.. ..++..+.+++|++|
T Consensus 6 ~~~l-~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKV-ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECS-TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEE
T ss_pred cccc-CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEE
Confidence 4445 478999999999999987653 68899999999988764 4588888888888888853 334444566666666
Q ss_pred eeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc
Q 036772 120 DLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS 199 (583)
Q Consensus 120 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~ 199 (583)
++++|.. ..+|..+..+++|+.|++++| .++.+|. .
T Consensus 83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N-~l~~l~~------------------------------------------~ 118 (290)
T 1p9a_G 83 DLSHNQL-QSLPLLGQTLPALTVLDVSFN-RLTSLPL------------------------------------------G 118 (290)
T ss_dssp ECCSSCC-SSCCCCTTTCTTCCEEECCSS-CCCCCCS------------------------------------------S
T ss_pred ECCCCcC-CcCchhhccCCCCCEEECCCC-cCcccCH------------------------------------------H
Confidence 6666532 344444444555555555442 2333332 2
Q ss_pred cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCC
Q 036772 200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI 279 (583)
Q Consensus 200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l 279 (583)
.+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|. +
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~--------------l 184 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS--------------L 184 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC--------------C
T ss_pred HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc--------------C
Confidence 24445555555555544433333344555566666666554332222234555555555444444 3
Q ss_pred cccCccCCCCCCCCEEEccCCCCc
Q 036772 280 TELPESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 280 ~~lp~~l~~l~~L~~L~Ls~n~l~ 303 (583)
+.+|..+..+++|+.|+|++|.+.
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccChhhcccccCCeEEeCCCCcc
Confidence 347777778888999999988765
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=1.2e-17 Score=162.46 Aligned_cols=204 Identities=19% Similarity=0.280 Sum_probs=129.8
Q ss_pred CCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-h
Q 036772 57 PLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-S 132 (583)
Q Consensus 57 ~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~ 132 (583)
.++++|. .+++|++|++++|+++.++. .+..+++|++|++++|+.++.++ .|..+++|++|++++|..+..++ .
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3777887 45588888888888888876 47888999999999887455554 47888899999998833444554 5
Q ss_pred hccCCCCCCEEEccCCCCCCcCCCcCCCCCcc---EEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCcc
Q 036772 133 SIQHLNKLVFLNLGRCISLKSLPTGINLDSLK---VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLV 208 (583)
Q Consensus 133 ~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~ 208 (583)
.+..+++|+.|++++| .++.+|....+++|+ +|++++|..+. .+|. .+..+++|+
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~--------------------~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMT--------------------SIPVNAFQGLCNET 158 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCC--------------------EECTTTTTTTBSSE
T ss_pred HhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchh--------------------hcCcccccchhcce
Confidence 6788999999999884 466677622666666 77777653333 3333 245555666
Q ss_pred -EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCC-CcccEEEccCCccccCccEEEeccCCCcccCcc
Q 036772 209 -RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNL-ESLKIMLANETAISQNLVDMSLVDCGITELPES 285 (583)
Q Consensus 209 -~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l-~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~ 285 (583)
.|++++|... .+|......++|++|++++|..+..+ +..+..+ ++|+.|++++|.+ +.+|..
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--------------~~l~~~ 223 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--------------TALPSK 223 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--------------CCCCCT
T ss_pred eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--------------ccCChh
Confidence 6666555443 34433333356666666665433333 2344555 5555444444433 335543
Q ss_pred CCCCCCCCEEEccCC
Q 036772 286 LGRSPSLKFLNLAEN 300 (583)
Q Consensus 286 l~~l~~L~~L~Ls~n 300 (583)
.+++|+.|+++++
T Consensus 224 --~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 --GLEHLKELIARNT 236 (239)
T ss_dssp --TCTTCSEEECTTC
T ss_pred --HhccCceeeccCc
Confidence 5677777777665
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.1e-18 Score=178.48 Aligned_cols=238 Identities=18% Similarity=0.223 Sum_probs=178.2
Q ss_pred CCCceEEEccCCChhhhcccccCC--CCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchh-hhhhccCCCCCCEE
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNL--AALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIE-IHSSIQHLNKLVFL 143 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~L 143 (583)
+..++.++++++.+. +..+..+ ++++.|++++|......+.+..+++|++|++++|..... ++..+..+++|++|
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 345788999988776 3445556 899999999998877777788899999999999986555 78889999999999
Q ss_pred EccCCCCCCcCCCcC-CCCCccEEEecCCCCccc--cc---ccCCCcCEEeccCC-CCcc--ccccccCCC-CccEEeee
Q 036772 144 NLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKR--FL---EISCNIENLDLSET-AIEE--LPSSIGNLS-RLVRLDLT 213 (583)
Q Consensus 144 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~--~~---~~~~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~ 213 (583)
++++|......+..+ .+++|++|++++|..+.. ++ ...++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 999985433455545 799999999999965552 33 34678999999999 8874 677788888 99999999
Q ss_pred CCC--CC-ccccccccCCCCCcEEEccCCCC-CCccccccCCCCcccEEEccCCc-cccCccEEEeccCCCcccCccCCC
Q 036772 214 NCS--RL-KSVSNSLCNLKSLQYLFLSGCLK-LEKLPEEIGNLESLKIMLANETA-ISQNLVDMSLVDCGITELPESLGR 288 (583)
Q Consensus 214 ~~~--~l-~~lp~~l~~l~~L~~L~l~~c~~-l~~lp~~l~~l~~L~~L~l~~~~-i~~~L~~L~L~~~~l~~lp~~l~~ 288 (583)
+|. .. ..++..+.++++|++|++++|.. ....+..+..+++|+.|++++|. +.. .....+..
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------~~~~~l~~ 270 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-------------ETLLELGE 270 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------------GGGGGGGG
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------------HHHHHHhc
Confidence 984 32 34677777889999999999884 34666777778887777777663 111 01134677
Q ss_pred CCCCCEEEccCCCCcccCh-hhhcc-Ccccccccccc
Q 036772 289 SPSLKFLNLAENDFEKIPS-SIKQL-SNLLFLTLQNC 323 (583)
Q Consensus 289 l~~L~~L~Ls~n~l~~lp~-~i~~l-~~L~~L~L~~c 323 (583)
+++|+.|++++| ++. .+..+ .+|..|++++|
T Consensus 271 ~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 271 IPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp CTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCC
T ss_pred CCCCCEEeccCc----cCHHHHHHHHhhCcceEEecc
Confidence 899999999988 332 23333 24667777655
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=2e-17 Score=164.24 Aligned_cols=205 Identities=22% Similarity=0.243 Sum_probs=101.1
Q ss_pred CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
.+++|++|++.++.++.++ ++..+++|++|++++|.. ..++.+..+++|++|++++|......+..++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444444444444444332 244445555555555432 22334445555555555554433222333455555555555
Q ss_pred cCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCcccc
Q 036772 146 GRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVS 222 (583)
Q Consensus 146 ~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp 222 (583)
++| .++.++.. + .+++|++|++++| .++.+|.. ++.+++|+.|++++|......+
T Consensus 117 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 117 VEN-QLQSLPDGVFDKLTNLTYLNLAHN---------------------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp TTS-CCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCC-cCCccCHHHhccCCCCCEEECCCC---------------------ccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 553 23333332 2 3444554444443 22333222 3445555555555554443333
Q ss_pred ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCC
Q 036772 223 NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF 302 (583)
Q Consensus 223 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l 302 (583)
..+..+++|++|++++|...+..+..+..+++|+.|++++|.+. +.+++|+.|+++.|.+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------------CCTTTTHHHHHHHHHT
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------------ccCcHHHHHHHHHHhC
Confidence 34455566666666665544444444556666666666555432 2355677777777777
Q ss_pred c-ccChhhhccCc
Q 036772 303 E-KIPSSIKQLSN 314 (583)
Q Consensus 303 ~-~lp~~i~~l~~ 314 (583)
+ .+|.+++.++.
T Consensus 235 ~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 235 SGVVRNSAGSVAP 247 (272)
T ss_dssp GGGBBCTTSCBCG
T ss_pred CCcccCcccccCC
Confidence 6 67776665544
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.7e-17 Score=166.34 Aligned_cols=195 Identities=18% Similarity=0.271 Sum_probs=103.2
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~ 125 (583)
++|++|+++++.++.+|....+++|++|++++|.+..++. +..+++|++|+|++|. +..++.+..+++|++|++++|.
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence 3666777766666666643356666666666666666555 6666666666666664 3334445555555555555543
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS 205 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 205 (583)
.. .++. +..+++|+.|++++| .++.++. ++.++
T Consensus 119 l~-~~~~-l~~l~~L~~L~l~~n--------------------------------------------~l~~~~~-l~~l~ 151 (308)
T 1h6u_A 119 IT-DVTP-LAGLSNLQVLYLDLN--------------------------------------------QITNISP-LAGLT 151 (308)
T ss_dssp CC-CCGG-GTTCTTCCEEECCSS--------------------------------------------CCCCCGG-GGGCT
T ss_pred CC-Cchh-hcCCCCCCEEECCCC--------------------------------------------ccCcCcc-ccCCC
Confidence 22 2221 444444444444442 2222222 34444
Q ss_pred CccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCcc
Q 036772 206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES 285 (583)
Q Consensus 206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~ 285 (583)
+|+.|++++|... .++. +..+++|++|++++|... .++. +..+++|+.|++++|.+ .+++ .
T Consensus 152 ~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l--------------~~~~-~ 212 (308)
T 1h6u_A 152 NLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI--------------SDVS-P 212 (308)
T ss_dssp TCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCC--------------CBCG-G
T ss_pred CccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccC-cChh-hcCCCCCCEEEccCCcc--------------Cccc-c
Confidence 4444444444322 2222 444555555555554322 2222 44445544444444443 3344 3
Q ss_pred CCCCCCCCEEEccCCCCcccChh
Q 036772 286 LGRSPSLKFLNLAENDFEKIPSS 308 (583)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~lp~~ 308 (583)
+..+++|+.|++++|.++..|..
T Consensus 213 l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 213 LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GTTCTTCCEEEEEEEEEECCCEE
T ss_pred ccCCCCCCEEEccCCeeecCCee
Confidence 67788889999999888877753
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=3.5e-17 Score=165.56 Aligned_cols=196 Identities=26% Similarity=0.358 Sum_probs=140.2
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772 88 QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY 167 (583)
Q Consensus 88 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 167 (583)
..+++|+.|++++|. +..++.+..+++|++|++++|.. ..++. +..+++|++|++++| .++.++....+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEE
T ss_pred HHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEE
Confidence 456677777777774 34456677777777777777643 33444 777777777777774 355554322455555555
Q ss_pred ecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772 168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247 (583)
Q Consensus 168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 247 (583)
+++ |.++.++. +..+++|+.|++++|.... ++. +..+++|++|++++|... .++.
T Consensus 114 l~~---------------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~ 168 (308)
T 1h6u_A 114 LTS---------------------TQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP 168 (308)
T ss_dssp CTT---------------------SCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG
T ss_pred CCC---------------------CCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh
Confidence 544 56666665 8899999999999987654 443 888999999999998544 4554
Q ss_pred ccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772 248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327 (583)
Q Consensus 248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 327 (583)
+..+++|+.|++++|.+. +++. +..+++|++|++++|.++.++. +..+++|+.|++++|+ +.
T Consensus 169 -l~~l~~L~~L~l~~n~l~--------------~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~ 230 (308)
T 1h6u_A 169 -LANLSKLTTLKADDNKIS--------------DISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-IT 230 (308)
T ss_dssp -GTTCTTCCEEECCSSCCC--------------CCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EE
T ss_pred -hcCCCCCCEEECCCCccC--------------cChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-ee
Confidence 778888777777666654 3554 7889999999999999998884 8899999999999984 44
Q ss_pred cCC
Q 036772 328 SLP 330 (583)
Q Consensus 328 ~lp 330 (583)
..|
T Consensus 231 ~~~ 233 (308)
T 1h6u_A 231 NQP 233 (308)
T ss_dssp CCC
T ss_pred cCC
Confidence 433
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=167.88 Aligned_cols=219 Identities=19% Similarity=0.177 Sum_probs=127.2
Q ss_pred CCCCceEEEccCCChhh--hcc--cccCCCCccEEeccCCCCCCCCCC-C--CCCCCcCEEeeeCCCCchhhh----hhc
Q 036772 66 IPEHLVSLEMPHSNIEQ--LWN--GVQNLAALKRLNLSYCKQLSRIPD-L--SLALNLEWLDLVGCASLIEIH----SSI 134 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~~~~l~~~~----~~i 134 (583)
....++.|.+.+..+.. +.. ....+++|++|++++|......|. + ..+++|++|+|++|......+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34457788888776642 111 123456799999999987777764 4 889999999999987665332 345
Q ss_pred cCCCCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCccc--c-----cccCCCcCEEeccCCCCccccccccCCC
Q 036772 135 QHLNKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKR--F-----LEISCNIENLDLSETAIEELPSSIGNLS 205 (583)
Q Consensus 135 ~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--~-----~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 205 (583)
..+++|++|+|++|. +..++ ..+ .+++|++|++++|..... + +..+++|++|++++|.++.++..
T Consensus 142 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~----- 215 (310)
T 4glp_A 142 WLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV----- 215 (310)
T ss_dssp TBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-----
T ss_pred hhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-----
Confidence 689999999999865 45444 445 788888888888754321 1 12234455555555555443331
Q ss_pred CccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccCCC---CcccEEEccCCccccCccEEEeccCCCcc
Q 036772 206 RLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNL---ESLKIMLANETAISQNLVDMSLVDCGITE 281 (583)
Q Consensus 206 ~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l---~~L~~L~l~~~~i~~~L~~L~L~~~~l~~ 281 (583)
+. .+..+++|++|++++|......|+.+..+ ++|+. |++++|.+++
T Consensus 216 ----------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~--------------L~Ls~N~l~~ 265 (310)
T 4glp_A 216 ----------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS--------------LNLSFAGLEQ 265 (310)
T ss_dssp ----------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC--------------EECCSSCCCS
T ss_pred ----------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE--------------EECCCCCCCc
Confidence 01 12334445555555444433334433333 23333 3333333333
Q ss_pred cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 282 LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 282 lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
+|..+. ++|+.|+|++|.++.+|. +..+++|+.|++++|
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSST
T ss_pred hhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCC
Confidence 555443 566666666666666554 455666666666665
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.4e-19 Score=199.77 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=119.4
Q ss_pred CCCCcceEEEecCCCCCCccceecCCccc-ccCCCccEEEecCC-CCCC--CCCCC-CCCCceEEEccCCChhh-----h
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLE-SFFNELRYFQWDGY-PLKS--LPSKN-IPEHLVSLEMPHSNIEQ-----L 83 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~l~~-----l 83 (583)
.+++|+.|+++++.+ ....+..+. .+ ++|+.|++++| .+.. ++... .+++|++|++++|.+.. +
T Consensus 103 ~~~~L~~L~L~~~~~-----~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVV-----TDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HCTTCCEEEEESCBC-----CHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred hCCCCCeEEeeCcEE-----cHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 578899999987742 222223332 35 48999999888 3433 43333 57889999999887653 3
Q ss_pred cccccCCCCccEEeccCCCCCCCCC-----C-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC---------
Q 036772 84 WNGVQNLAALKRLNLSYCKQLSRIP-----D-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC--------- 148 (583)
Q Consensus 84 ~~~~~~l~~L~~L~Ls~~~~l~~~p-----~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c--------- 148 (583)
+.....+++|+.|++++|. ..++ . +..+++|++|++++|.....++..+..+++|+.|++..|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 3334577889999998886 2222 1 234688999999988666667777777888888875443
Q ss_pred ----------CCCCcC-----------CCcC-CCCCccEEEecCCCCccc-----ccccCCCcCEEeccCCCCc--cccc
Q 036772 149 ----------ISLKSL-----------PTGI-NLDSLKVLYLGGCSNLKR-----FLEISCNIENLDLSETAIE--ELPS 199 (583)
Q Consensus 149 ----------~~l~~l-----------p~~~-~l~~L~~L~L~~c~~l~~-----~~~~~~~L~~L~L~~~~i~--~lp~ 199 (583)
..++.+ +..+ .+++|++|++++|. +.. +....++|+.|++.++ +. .++.
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 222221 1111 46788888888876 322 1234567777777766 33 1222
Q ss_pred cccCCCCccEEeee
Q 036772 200 SIGNLSRLVRLDLT 213 (583)
Q Consensus 200 ~i~~l~~L~~L~L~ 213 (583)
....+++|+.|++.
T Consensus 333 l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 333 LASTCKDLRELRVF 346 (594)
T ss_dssp HHHHCTTCCEEEEE
T ss_pred HHHhCCCCCEEEEe
Confidence 23346677777773
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1e-18 Score=182.55 Aligned_cols=230 Identities=15% Similarity=0.135 Sum_probs=120.0
Q ss_pred CCCCceEEEccCCChhh-----hcccccCCCCccEEeccCCCCCC---CCC-C-------CCCCCCcCEEeeeCCCCch-
Q 036772 66 IPEHLVSLEMPHSNIEQ-----LWNGVQNLAALKRLNLSYCKQLS---RIP-D-------LSLALNLEWLDLVGCASLI- 128 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~~~~l~---~~p-~-------l~~l~~L~~L~L~~~~~l~- 128 (583)
.+++|++|++++|.+.. +...+..+++|++|+|++|.... .+| . +..+++|++|+|++|....
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45556666666665553 23335556666666666652211 112 1 1344555555555554433
Q ss_pred ---hhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC------------CCcCEEeccCCC
Q 036772 129 ---EIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS------------CNIENLDLSETA 193 (583)
Q Consensus 129 ---~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~------------~~L~~L~L~~~~ 193 (583)
.++..+..+++|++|+|++|.. +.... ..++..+ ++|++|++++|.
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~------------------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAG------------------AKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCC-HHHHH------------------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCC-CHHHH------------------HHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 2444455555555555555322 11100 0111111 455555555555
Q ss_pred Cc--ccc---ccccCCCCccEEeeeCCCCCc-----cccccccCCCCCcEEEccCCCCC----CccccccCCCCcccEEE
Q 036772 194 IE--ELP---SSIGNLSRLVRLDLTNCSRLK-----SVSNSLCNLKSLQYLFLSGCLKL----EKLPEEIGNLESLKIML 259 (583)
Q Consensus 194 i~--~lp---~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~ 259 (583)
++ .+| ..+..+++|++|++++|.... ..+..+..+++|++|++++|... ..+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 54 233 345566677777777665432 12335666667777777766542 44555666666666655
Q ss_pred ccCCccccCccEEEeccCCCcccCccC--CCCCCCCEEEccCCCCcc-----cChhh-hccCcccccccccc
Q 036772 260 ANETAISQNLVDMSLVDCGITELPESL--GRSPSLKFLNLAENDFEK-----IPSSI-KQLSNLLFLTLQNC 323 (583)
Q Consensus 260 l~~~~i~~~L~~L~L~~~~l~~lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c 323 (583)
+++|.+... ....++..+ +.+++|+.|+|++|.++. +|..+ .++++|+.|++++|
T Consensus 251 L~~n~i~~~---------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 251 LNDCLLSAR---------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp CTTCCCCHH---------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCCCchh---------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 555544320 000134444 346777777777777775 66666 55677777777776
No 88
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8.2e-19 Score=193.64 Aligned_cols=262 Identities=19% Similarity=0.163 Sum_probs=183.4
Q ss_pred ccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCCh----hhhcccccCCCCccEEeccCCCCCCCCCC-CCCCC
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNI----EQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLAL 114 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l----~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~ 114 (583)
+..+ ++|+.|++++|.+..+|..+ .+++|++|++..... ...+..+..+++|+.|+++++ ....+|. +..++
T Consensus 216 ~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 216 ARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA 293 (592)
T ss_dssp HHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred HhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence 3445 58999999999888887655 788999999985322 233455778889999999875 3344453 66788
Q ss_pred CcCEEeeeCCCCchhh-hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecC----------CCCccc-----c
Q 036772 115 NLEWLDLVGCASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGG----------CSNLKR-----F 177 (583)
Q Consensus 115 ~L~~L~L~~~~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~----------c~~l~~-----~ 177 (583)
+|++|+|++|...... ...+..+++|+.|+++++..-..++... .+++|++|++++ |..+.. +
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 9999999998844333 3456889999999997432212222222 578899999994 666542 2
Q ss_pred cccCCCcCEEeccCCCCcc-ccccccC-CCCccEEeeeC---CCCCcc------ccccccCCCCCcEEEccCCCC--CCc
Q 036772 178 LEISCNIENLDLSETAIEE-LPSSIGN-LSRLVRLDLTN---CSRLKS------VSNSLCNLKSLQYLFLSGCLK--LEK 244 (583)
Q Consensus 178 ~~~~~~L~~L~L~~~~i~~-lp~~i~~-l~~L~~L~L~~---~~~l~~------lp~~l~~l~~L~~L~l~~c~~--l~~ 244 (583)
....++|+.|++..+.++. .+..++. +++|+.|++++ |..++. ++..+.++++|++|+++.|.. ...
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 3446789999998777763 2333444 88999999973 344443 333466788999999987652 222
Q ss_pred ccccc-CCCCcccEEEccCCcccc-----------CccEEEeccCCCcc--cCccCCCCCCCCEEEccCCCCcc
Q 036772 245 LPEEI-GNLESLKIMLANETAISQ-----------NLVDMSLVDCGITE--LPESLGRSPSLKFLNLAENDFEK 304 (583)
Q Consensus 245 lp~~l-~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~ 304 (583)
.+..+ ..+++|+.|++++|.+.+ .|+.|++++|.+++ ++..+..+++|++|+|++|+++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 22333 347889999999888754 28999999999765 45556678999999999999873
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=9e-19 Score=183.03 Aligned_cols=243 Identities=18% Similarity=0.133 Sum_probs=164.1
Q ss_pred cceecCCcccccCCCccEEEecCCCCCC-----CCCCC-CCCCceEEEccCCChhh----hccc-------ccCCCCccE
Q 036772 33 CKVRHSRCLESFFNELRYFQWDGYPLKS-----LPSKN-IPEHLVSLEMPHSNIEQ----LWNG-------VQNLAALKR 95 (583)
Q Consensus 33 ~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~l~~----l~~~-------~~~l~~L~~ 95 (583)
....++..+..+ ++|++|++++|.+.. ++..+ .+++|++|+++++.+.. +|.+ +..+++|++
T Consensus 20 ~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 20 DEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 345567777777 589999999998765 33333 68899999999975543 2333 478999999
Q ss_pred EeccCCCCCCC----CC-CCCCCCCcCEEeeeCCCCchhh----hhhccCC---------CCCCEEEccCCCCC-CcCC-
Q 036772 96 LNLSYCKQLSR----IP-DLSLALNLEWLDLVGCASLIEI----HSSIQHL---------NKLVFLNLGRCISL-KSLP- 155 (583)
Q Consensus 96 L~Ls~~~~l~~----~p-~l~~l~~L~~L~L~~~~~l~~~----~~~i~~l---------~~L~~L~L~~c~~l-~~lp- 155 (583)
|+|++|..... ++ .+..+++|++|+|++|...... +..+..+ ++|++|++++|..- ..+|
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 99999976653 34 4778899999999999865433 3334444 88888888885422 1222
Q ss_pred --CcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc------cccccccCCCCccEEeeeCCCCC----cccc
Q 036772 156 --TGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE------ELPSSIGNLSRLVRLDLTNCSRL----KSVS 222 (583)
Q Consensus 156 --~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp 222 (583)
..+ .+++|++|++++ |.++ -+|..+..+++|+.|+|++|... ..+|
T Consensus 179 l~~~l~~~~~L~~L~L~~---------------------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 237 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQ---------------------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237 (386)
T ss_dssp HHHHHHHCTTCCEEECCS---------------------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHhCCCcCEEECcC---------------------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence 122 355555555555 4444 12335777888888888887754 4567
Q ss_pred ccccCCCCCcEEEccCCCCCCc----ccccc--CCCCcccEEEccCCccccCccEEEeccCCCcccCccC-CCCCCCCEE
Q 036772 223 NSLCNLKSLQYLFLSGCLKLEK----LPEEI--GNLESLKIMLANETAISQNLVDMSLVDCGITELPESL-GRSPSLKFL 295 (583)
Q Consensus 223 ~~l~~l~~L~~L~l~~c~~l~~----lp~~l--~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L 295 (583)
..+..+++|++|++++|..... ++..+ +.+++|+.|++++|.+... .+..+|..+ ..+++|+.|
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~---------g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH---------HHHHHHHHHHHHCTTCCEE
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH---------HHHHHHHHHHhcCCCceEE
Confidence 7777888888888888775443 45555 3366666665555554320 000166666 568999999
Q ss_pred EccCCCCcccC
Q 036772 296 NLAENDFEKIP 306 (583)
Q Consensus 296 ~Ls~n~l~~lp 306 (583)
++++|.++...
T Consensus 309 ~l~~N~l~~~~ 319 (386)
T 2ca6_A 309 ELNGNRFSEED 319 (386)
T ss_dssp ECTTSBSCTTS
T ss_pred EccCCcCCcch
Confidence 99999998555
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=6.7e-16 Score=151.23 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=108.2
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 123 (583)
...+.++++++.++++|..+. ++|++|++++|.+..++. .+.++++|++|+|++|......+. +..+++|++|+|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 357788888888888887654 678888888888887655 477888888888888866555443 67777788888877
Q ss_pred CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-c
Q 036772 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-S 200 (583)
Q Consensus 124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~ 200 (583)
|......+..++.+++|++|+|++| .++.+|... .+++|++|++++ |.++.+|. .
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~---------------------N~l~~~~~~~ 150 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT---------------------NQLQSIPAGA 150 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTT
T ss_pred CcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC---------------------CcCCccCHHH
Confidence 6654444455666777777777663 455554432 344444444443 44444444 3
Q ss_pred ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 201 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
++.+++|++|++++|......+..+..+++|++|++++|.
T Consensus 151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5555666666666655443333344555555555555543
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=1.6e-18 Score=191.32 Aligned_cols=307 Identities=16% Similarity=0.115 Sum_probs=195.5
Q ss_pred CCCCcceEEEecCCCCCCccceecC------------CcccccCCCccEEEecCCCCCCCC-CCC--CCCCceEEEccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHS------------RCLESFFNELRYFQWDGYPLKSLP-SKN--IPEHLVSLEMPHS 78 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~------------~~l~~l~~~Lr~L~l~~~~l~~lp-~~~--~~~~L~~L~L~~~ 78 (583)
++++|+.|+++++.... .....| .....+ ++|++|+++++.+.... ..+ .+++|++|+++++
T Consensus 64 ~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFA--DFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HCTTCCEEEEECSCGGG--GGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred hCCCceEEeccCCCchh--hcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 68999999999985200 001111 112344 58999999999765321 112 4789999999998
Q ss_pred -Chhh--hcccccCCCCccEEeccCCCCCCCC----CC-CCCCCCcCEEeeeCCC-Cc--hhhhhhccCCCCCCEEEccC
Q 036772 79 -NIEQ--LWNGVQNLAALKRLNLSYCKQLSRI----PD-LSLALNLEWLDLVGCA-SL--IEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 79 -~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~~----p~-l~~l~~L~~L~L~~~~-~l--~~~~~~i~~l~~L~~L~L~~ 147 (583)
.+.. ++....++++|++|+|++|...... +. ...+++|++|++++|. .. ..+...+..+++|+.|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 5553 5555668999999999999743322 22 2367899999999986 11 22334446689999999999
Q ss_pred CCCCCcCCCcC-CCCCccEEEecCCC-------------------Cccc-----------cc---ccCCCcCEEeccCCC
Q 036772 148 CISLKSLPTGI-NLDSLKVLYLGGCS-------------------NLKR-----------FL---EISCNIENLDLSETA 193 (583)
Q Consensus 148 c~~l~~lp~~~-~l~~L~~L~L~~c~-------------------~l~~-----------~~---~~~~~L~~L~L~~~~ 193 (583)
|..++.+|..+ .+++|++|++.+|. .++. ++ ....+|++|+++++.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 87777766655 78889999865442 2221 12 134688888888887
Q ss_pred Ccc--ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccC--------CCCCCc--cccccCCCCcccEEEcc
Q 036772 194 IEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG--------CLKLEK--LPEEIGNLESLKIMLAN 261 (583)
Q Consensus 194 i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~--------c~~l~~--lp~~l~~l~~L~~L~l~ 261 (583)
++. ++..+..+++|+.|++++|.....++.....+++|++|++++ |..+.. +......+++|+.|.+.
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~ 380 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF 380 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence 663 333466788888888888722122333334578888888844 233321 11122246778888776
Q ss_pred CCcccc-----------CccEEEec--c----CCCcccC------ccCCCCCCCCEEEccCCCCc-ccChhhhc-cCccc
Q 036772 262 ETAISQ-----------NLVDMSLV--D----CGITELP------ESLGRSPSLKFLNLAENDFE-KIPSSIKQ-LSNLL 316 (583)
Q Consensus 262 ~~~i~~-----------~L~~L~L~--~----~~l~~lp------~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~-l~~L~ 316 (583)
.+.+.. .|+.|+++ + +.+++.| ..+..+++|+.|++++ .++ ..+..+.. +++|+
T Consensus 381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~ 459 (594)
T 2p1m_B 381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKME 459 (594)
T ss_dssp ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCC
T ss_pred cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhcc
Confidence 666542 37888888 3 3455332 2255677888888876 444 22233443 77788
Q ss_pred cccccccc
Q 036772 317 FLTLQNCK 324 (583)
Q Consensus 317 ~L~L~~c~ 324 (583)
.|++++|.
T Consensus 460 ~L~L~~~~ 467 (594)
T 2p1m_B 460 MLSVAFAG 467 (594)
T ss_dssp EEEEESCC
T ss_pred EeeccCCC
Confidence 88887774
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.5e-15 Score=148.81 Aligned_cols=176 Identities=22% Similarity=0.326 Sum_probs=96.9
Q ss_pred CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772 68 EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146 (583)
Q Consensus 68 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 146 (583)
...++++++++.++.+|.++. ++|+.|+|++|......+ .+..+++|++|+|++|......+..+..+++|+.|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345677777777777776654 577777777776555444 36667777777777765544444455666666666666
Q ss_pred CCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccc
Q 036772 147 RCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSN 223 (583)
Q Consensus 147 ~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 223 (583)
+| .++.+|... .+++|++|+++ +|.++.+|.. +..+++|+.|++++|......+
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~---------------------~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~- 148 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLG---------------------GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA- 148 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECC---------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred CC-cccccChhHhcccCCCCEEEcC---------------------CCcCCCcChhHhccCCcccEEECcCCcCCccCH-
Confidence 53 333443322 33333333333 2344444432 3445555555555543332222
Q ss_pred cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCC
Q 036772 224 SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDF 302 (583)
Q Consensus 224 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l 302 (583)
..+..+++|+.|++++|.+. .++ ..+..+++|+.|++++|.+
T Consensus 149 -----------------------~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 149 -----------------------GAFDKLTNLQTLSLSTNQLQ--------------SVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -----------------------TTTTTCTTCCEEECCSSCCS--------------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred -----------------------HHcCcCcCCCEEECCCCcCC--------------ccCHHHHhCCCCCCEEEeeCCce
Confidence 23444444444444443332 244 3567777888888888887
Q ss_pred ccc
Q 036772 303 EKI 305 (583)
Q Consensus 303 ~~l 305 (583)
..-
T Consensus 192 ~c~ 194 (251)
T 3m19_A 192 DCS 194 (251)
T ss_dssp CTT
T ss_pred eCC
Confidence 643
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=6.6e-16 Score=168.21 Aligned_cols=189 Identities=21% Similarity=0.287 Sum_probs=137.2
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~ 125 (583)
.+|+.|+++++.++.+|..+ +++|++|++++|.++.+| ..+++|++|+|++|.+.. +|.+.. +|++|+|++|.
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCc
Confidence 37888888888888888765 377888888888888887 457888888888886544 666443 88888888876
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS 205 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 205 (583)
... +|. .+++|+.|+|++ +.++.+|. .+++|++|++++|. +..+|....+|+.|++++|.++.+|. +..
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~-- 200 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPA-VPV-- 200 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-CC---
T ss_pred CCC-CCC---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhh-HHH--
Confidence 443 555 678888888887 45666776 57788888888864 44455534678888888888888877 544
Q ss_pred Cc-------cEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772 206 RL-------VRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253 (583)
Q Consensus 206 ~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 253 (583)
+| +.|++++|.. ..+|..+..+++|+.|++++|...+..|..+..+.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 66 8888887654 35777777788888888888777776776655543
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=6.3e-16 Score=168.40 Aligned_cols=189 Identities=17% Similarity=0.211 Sum_probs=157.5
Q ss_pred CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEE
Q 036772 17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRL 96 (583)
Q Consensus 17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L 96 (583)
+|+.|++++|.+ ..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|++|
T Consensus 60 ~L~~L~Ls~n~L------~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNL------SSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCC------SCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCCC------CccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 899999998853 3477655 368999999999999999 457899999999999999988 655 99999
Q ss_pred eccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccc
Q 036772 97 NLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR 176 (583)
Q Consensus 97 ~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~ 176 (583)
+|++|.+.. +|. .+++|+.|+|++|... .+|. .+++|+.|+|++| .++.+|. +. ++|+.|+|++| .+..
T Consensus 126 ~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~N-~L~~ 194 (571)
T 3cvr_A 126 DVDNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVSTN-LLES 194 (571)
T ss_dssp ECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCSS-CCSS
T ss_pred ECCCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcCC-CCCc
Confidence 999997554 776 7899999999998754 4665 6789999999995 6777888 65 99999999997 5667
Q ss_pred ccccCCCc-------CEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772 177 FLEISCNI-------ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS 230 (583)
Q Consensus 177 ~~~~~~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 230 (583)
+|....+| +.|++++|.++.+|..+..+++|+.|++++|......|..+..+..
T Consensus 195 lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 77744578 9999999999999999999999999999999988888877766543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=2.3e-15 Score=154.97 Aligned_cols=220 Identities=20% Similarity=0.237 Sum_probs=148.4
Q ss_pred eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhh-hccCCCCCCEEEccC
Q 036772 71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLGR 147 (583)
Q Consensus 71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~ 147 (583)
++++.++++++++|.++ .++++.|+|++|++. .+| .|..+++|++|+|++|.....++. .+.++++|+.+...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 46777888888888766 367888888888644 444 377888888888888776665653 567777777655555
Q ss_pred CCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccc-
Q 036772 148 CISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSN- 223 (583)
Q Consensus 148 c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~- 223 (583)
++.++.++... .+++|++|++++ |.++.+|. .+....++..|++.++..+..++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISN---------------------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEE---------------------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred CCcccccCchhhhhccccccccccc---------------------cccccCCchhhcccchhhhhhhcccccccccccc
Confidence 56676665433 566666666665 44555443 234556778888887766666554
Q ss_pred cccCCC-CCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCC
Q 036772 224 SLCNLK-SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAEND 301 (583)
Q Consensus 224 ~l~~l~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~ 301 (583)
.+..+. .++.|++++|. +..+|.......+|+.+.+.+ ++.++.+|. .+..+++|+.|+|++|+
T Consensus 148 ~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~-------------~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 148 SFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSD-------------NNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp SSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTT-------------CTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred chhhcchhhhhhcccccc-ccCCChhhccccchhHHhhcc-------------CCcccCCCHHHhccCcccchhhcCCCC
Confidence 445543 57888888864 445555544445555554432 234556875 57899999999999999
Q ss_pred CcccChhhhccCcccccccccccccccCC
Q 036772 302 FEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 302 l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
++.+|.. .+.+|+.|.+.++..++++|
T Consensus 214 l~~lp~~--~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 214 IHSLPSY--GLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred cCccChh--hhccchHhhhccCCCcCcCC
Confidence 9999864 35667777777777777776
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.4e-16 Score=159.44 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=148.4
Q ss_pred CCcCEEeeeCCCCchhh-hh--hccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccccc-------cc
Q 036772 114 LNLEWLDLVGCASLIEI-HS--SIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFL-------EI 180 (583)
Q Consensus 114 ~~L~~L~L~~~~~l~~~-~~--~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~-------~~ 180 (583)
..++.|.+.++...... .. ....+++|++|++++|...+..|..+ .+++|++|++++|..-...+ ..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34666666665543211 11 11234567777777765555555542 47777778887765443222 23
Q ss_pred CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcc--cc--ccccCCCCCcEEEccCCCCCCcccc----ccCC
Q 036772 181 SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKS--VS--NSLCNLKSLQYLFLSGCLKLEKLPE----EIGN 251 (583)
Q Consensus 181 ~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~l~~c~~l~~lp~----~l~~ 251 (583)
..+|+.|++++|.+..++ ..++.+++|++|++++|..... ++ ..+..+++|++|++++|.. ..++. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhc
Confidence 568888888889998776 4688999999999999986543 32 3346899999999999865 44444 2456
Q ss_pred CCcccEEEccCCccccCccEEEeccCCCccc-CccCCCC---CCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772 252 LESLKIMLANETAISQNLVDMSLVDCGITEL-PESLGRS---PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327 (583)
Q Consensus 252 l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l-p~~l~~l---~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 327 (583)
+++|++|++++|.+. ++ |..+..+ ++|++|+|++|.++.+|..+. ++|+.|++++| +++
T Consensus 223 l~~L~~L~Ls~N~l~--------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~ 285 (310)
T 4glp_A 223 GVQPHSLDLSHNSLR--------------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLN 285 (310)
T ss_dssp TCCCSSEECTTSCCC--------------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCC
T ss_pred CCCCCEEECCCCCCC--------------ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCC
Confidence 677776666665544 44 7666666 799999999999999998774 89999999998 566
Q ss_pred cCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772 328 SLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362 (583)
Q Consensus 328 ~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~ 362 (583)
.+|. +..+++|+.+.+.+|++
T Consensus 286 ~~~~--------------~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 286 RAPQ--------------PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCC--------------TTSCCCCSCEECSSTTT
T ss_pred CCch--------------hhhCCCccEEECcCCCC
Confidence 5542 34456666777777765
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=1.3e-17 Score=172.82 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=76.8
Q ss_pred EEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhc-----ccccCCC-CccEEeccCCCCCCCCC-CCCCC-----CC
Q 036772 50 YFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLW-----NGVQNLA-ALKRLNLSYCKQLSRIP-DLSLA-----LN 115 (583)
Q Consensus 50 ~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p-~l~~l-----~~ 115 (583)
+++++.+.+....+.+ .+++|++|++++|.+...+ ..+..++ +|++|+|++|......+ .+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566777766543333 4455888888888887665 4567777 78888888886554433 23332 78
Q ss_pred cCEEeeeCCCCchhhhh----hccCC-CCCCEEEccCCCCCCcCCCcC------C-CCCccEEEecCCC
Q 036772 116 LEWLDLVGCASLIEIHS----SIQHL-NKLVFLNLGRCISLKSLPTGI------N-LDSLKVLYLGGCS 172 (583)
Q Consensus 116 L~~L~L~~~~~l~~~~~----~i~~l-~~L~~L~L~~c~~l~~lp~~~------~-l~~L~~L~L~~c~ 172 (583)
|++|+|++|......+. .+..+ ++|+.|++++|. ++..+... . .++|++|++++|.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 88888888775444333 34444 788888887754 44444311 1 2467777777653
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.2e-16 Score=165.37 Aligned_cols=243 Identities=13% Similarity=0.101 Sum_probs=144.9
Q ss_pred EEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-----CCCCCC-CcCEEeeeCCCCchhhhhhccCC-----CC
Q 036772 72 SLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-----DLSLAL-NLEWLDLVGCASLIEIHSSIQHL-----NK 139 (583)
Q Consensus 72 ~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~-~L~~L~L~~~~~l~~~~~~i~~l-----~~ 139 (583)
.+++++|.+.... ..+...++|++|+|++|......+ .+..++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888888544 444555569999999997554432 366777 89999999987665545555443 89
Q ss_pred CCEEEccCCCCCCcCCCc-----C-CC-CCccEEEecCCCCcccccc-------c-CCCcCEEeccCCCCc-----cccc
Q 036772 140 LVFLNLGRCISLKSLPTG-----I-NL-DSLKVLYLGGCSNLKRFLE-------I-SCNIENLDLSETAIE-----ELPS 199 (583)
Q Consensus 140 L~~L~L~~c~~l~~lp~~-----~-~l-~~L~~L~L~~c~~l~~~~~-------~-~~~L~~L~L~~~~i~-----~lp~ 199 (583)
|++|+|++|. ++..+.. + .+ ++|++|++++|..-...+. . ..+|++|++++|.++ .++.
T Consensus 82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 9999999864 5544332 2 33 7888888888753221111 1 247777777777776 3444
Q ss_pred cccCCC-CccEEeeeCCCCCccccc----cccCC-CCCcEEEccCCCCCC----ccccccCC-CCcccEEEccCCccccC
Q 036772 200 SIGNLS-RLVRLDLTNCSRLKSVSN----SLCNL-KSLQYLFLSGCLKLE----KLPEEIGN-LESLKIMLANETAISQN 268 (583)
Q Consensus 200 ~i~~l~-~L~~L~L~~~~~l~~lp~----~l~~l-~~L~~L~l~~c~~l~----~lp~~l~~-l~~L~~L~l~~~~i~~~ 268 (583)
.+..++ +|++|++++|......+. .+... ++|++|++++|.... .++..+.. .++|+.|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 445554 777777777765444333 23334 477777777765332 13333333 23555555555443320
Q ss_pred ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcc--------cChhhhccCccccccccccc
Q 036772 269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEK--------IPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~--------lp~~i~~l~~L~~L~L~~c~ 324 (583)
....+...+..+++|+.|++++|.+.. ++..+..+++|+.|++++++
T Consensus 241 ---------~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 241 ---------SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp ---------CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ---------HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 000122345667777788877777332 23345566677777777663
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=5.2e-15 Score=148.24 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772 286 LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 286 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c 323 (583)
+..+++|+.|++++|.++.+|. +..+++|+.|++++|
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence 5556666666666666666653 566666666666665
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=1.2e-14 Score=137.82 Aligned_cols=175 Identities=22% Similarity=0.251 Sum_probs=100.3
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCC
Q 036772 49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCAS 126 (583)
Q Consensus 49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~ 126 (583)
+.++.+++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|+.....+. +..+++|++|++++|..
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45566666666666543 34677777777776666544 56677777777777654433332 56666777777776654
Q ss_pred chhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccC
Q 036772 127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGN 203 (583)
Q Consensus 127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~ 203 (583)
....+..++.+++|+.|++++| .++.+|... .+++|++|++++ |.++.+|.. +..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~---------------------N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ---------------------NQLKSVPDGVFDR 146 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---------------------SCCSCCCTTTTTT
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC---------------------CccceeCHHHhcc
Confidence 3333334566666777776663 444444432 445555554444 344444443 556
Q ss_pred CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772 204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253 (583)
Q Consensus 204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~ 253 (583)
+++|+.|++++|... +.++.|+.|+++.+...+.+|+.++.++
T Consensus 147 l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 666777777666432 3345666666666666666666555443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=7e-15 Score=147.32 Aligned_cols=166 Identities=22% Similarity=0.226 Sum_probs=101.0
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~ 125 (583)
++|++|+++++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc
Confidence 4677777777777777654466777777777777776655 6777777777777774 3445566677777777777765
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS 205 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~ 205 (583)
... + +.+..+++|+.|++++| .++.++....+++|++|++++ |.++.+++ +..++
T Consensus 124 i~~-~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~---------------------N~l~~~~~-l~~l~ 178 (291)
T 1h6t_A 124 ISD-I-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED---------------------NQISDIVP-LAGLT 178 (291)
T ss_dssp CCC-C-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS---------------------SCCCCCGG-GTTCT
T ss_pred CCC-C-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccC---------------------Cccccchh-hcCCC
Confidence 332 2 34666677777777663 344442211455555555544 45555544 55666
Q ss_pred CccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
+|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus 179 ~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 179 KLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp TCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEE
T ss_pred ccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCc
Confidence 6666666665432 233 25566666666666654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=6.8e-15 Score=161.86 Aligned_cols=174 Identities=22% Similarity=0.287 Sum_probs=80.5
Q ss_pred cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772 88 QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY 167 (583)
Q Consensus 88 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~ 167 (583)
..+++|+.|++++|. +..++.+..+++|+.|+|++|.... ++. +..+++|+.|+|++| .+..+|....+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEE
Confidence 344555555555553 3334445555555555555544322 222 555556666666553 344444222455555555
Q ss_pred ecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772 168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247 (583)
Q Consensus 168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~ 247 (583)
|++| .+..++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|......|
T Consensus 116 Ls~N---------------------~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 116 LEHN---------------------GISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CTTS---------------------CCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred ecCC---------------------CCCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-
Confidence 5443 222222 24444455555555443322 1 334445555555555543332222
Q ss_pred ccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772 248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306 (583)
Q Consensus 248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 306 (583)
+..+++|+.|++++|.+. ++| .+..+++|+.|+|++|.+...|
T Consensus 171 -l~~l~~L~~L~Ls~N~i~--------------~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHIS--------------DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GTTCTTCCEEECCSSCCC--------------BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred -hccCCCCCEEECcCCCCC--------------CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 444444444444443332 232 3555666666666666655443
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.1e-14 Score=137.01 Aligned_cols=122 Identities=21% Similarity=0.229 Sum_probs=63.5
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC-CCCCCCCCCcCEEeeeCCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR-IPDLSLALNLEWLDLVGCA 125 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~~~ 125 (583)
+|++|+++++.++.+|....+++|++|++++|.++.++ .+..+++|++|++++|..... .+.++.+++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence 56666666666665553235555666666655554442 455556666666665544432 2245555666666666655
Q ss_pred CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEec
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLG 169 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~ 169 (583)
.....+..++.+++|+.|++++|..++.+|....+++|++|+++
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ 167 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence 54445555555555555555554434444321133444444333
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.6e-14 Score=158.82 Aligned_cols=169 Identities=21% Similarity=0.230 Sum_probs=99.6
Q ss_pred cccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEee
Q 036772 42 ESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDL 121 (583)
Q Consensus 42 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L 121 (583)
..+ ++|+.|+++++.+..+|....+++|++|+|++|.+..++. +..+++|+.|+|++|. +..++.+..+++|++|+|
T Consensus 40 ~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred hcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence 344 4777777877777777754467777777777777777665 7777777777777774 344566777777777777
Q ss_pred eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccc
Q 036772 122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI 201 (583)
Q Consensus 122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i 201 (583)
++|.... + +.+..+++|+.|+|++| .+..++....+++|+.|+|++ |.+..+++ +
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~---------------------N~l~~~~~-l 171 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED---------------------NQISDIVP-L 171 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCS---------------------SCCCCCGG-G
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcC---------------------CcCCCchh-h
Confidence 7765432 2 34666777777777664 344442211455555555544 33444333 4
Q ss_pred cCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772 202 GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240 (583)
Q Consensus 202 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 240 (583)
..+++|+.|+|++|.... ++ .+..+++|+.|++++|.
T Consensus 172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred ccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 455555555555543322 22 34444555555555443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=4.1e-14 Score=134.18 Aligned_cols=166 Identities=23% Similarity=0.181 Sum_probs=125.8
Q ss_pred ceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-
Q 036772 34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD- 109 (583)
Q Consensus 34 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~- 109 (583)
...+|.+ ++++|++|+++++.++.+|... .+++|++|++++|+++.++.. +..+++|++|+|++|......+.
T Consensus 19 l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV 95 (208)
T ss_dssp CSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence 3445544 3568999999999999998753 789999999999999988765 68999999999999976654443
Q ss_pred CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccccCCCcCEE
Q 036772 110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLEISCNIENL 187 (583)
Q Consensus 110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L 187 (583)
+..+++|++|++++|......+..++.+++|+.|++++| .++.+|.. + .+++|++|++++|..
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~-------------- 160 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW-------------- 160 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB--------------
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe--------------
Confidence 789999999999998765444456899999999999995 56677765 3 688888888888632
Q ss_pred eccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772 188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS 230 (583)
Q Consensus 188 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 230 (583)
.+.+++|+.|+++.|.....+|..++.++.
T Consensus 161 -------------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 -------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 123445666666665555556655554443
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.5e-14 Score=136.04 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=48.3
Q ss_pred CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
.+++|++|++++|.++.++ ++..+++|++|++++| ....++.+..+++|++|++++|......+..++.+++|+.|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4556666666666666665 5666666666666666 3444455666666666666665554444555555555555555
Q ss_pred cCC
Q 036772 146 GRC 148 (583)
Q Consensus 146 ~~c 148 (583)
++|
T Consensus 120 s~n 122 (197)
T 4ezg_A 120 SHS 122 (197)
T ss_dssp CSS
T ss_pred cCC
Confidence 553
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.4e-16 Score=174.14 Aligned_cols=189 Identities=17% Similarity=0.163 Sum_probs=122.8
Q ss_pred CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC-------------CCCcCCCcC-CCCCccEEE-ecCCC--
Q 036772 110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI-------------SLKSLPTGI-NLDSLKVLY-LGGCS-- 172 (583)
Q Consensus 110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-L~~c~-- 172 (583)
+...++|+.|+|++|. +..+|.+++.+++|+.|+++++. ..+..|..+ .+++|+.|+ ++.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 3556777777777754 45777778778888877775532 223333333 566666666 33210
Q ss_pred ----------CcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCC
Q 036772 173 ----------NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242 (583)
Q Consensus 173 ----------~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l 242 (583)
.+..++. ..|+.|++++|.++.+|. ++.+++|+.|++++|... .+|..++++++|+.|++++|...
T Consensus 424 ~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhhcccccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1122221 257778888888888876 788888888888887654 67777888888888888876544
Q ss_pred CccccccCCCCcccEEEccCCccccCccEEEeccCCCccc--CccCCCCCCCCEEEccCCCCcccChhh----hccCccc
Q 036772 243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITEL--PESLGRSPSLKFLNLAENDFEKIPSSI----KQLSNLL 316 (583)
Q Consensus 243 ~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~ 316 (583)
.+| .++.+++|+.|++++|.+. ++ |..++.+++|+.|+|++|.++.+|+.+ ..+++|+
T Consensus 500 -~lp-~l~~l~~L~~L~Ls~N~l~--------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 500 -NVD-GVANLPRLQELLLCNNRLQ--------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp -CCG-GGTTCSSCCEEECCSSCCC--------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred -CCc-ccCCCCCCcEEECCCCCCC--------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 356 6777777666655555543 34 677777888888888888877666533 2356666
Q ss_pred ccc
Q 036772 317 FLT 319 (583)
Q Consensus 317 ~L~ 319 (583)
.|+
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=3.4e-13 Score=129.20 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=70.8
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc--cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN--GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
-+.++++++.++.+|..+ +..+++|++++|.++.++. .+..+++|++|+|++|++....+ .|..+++|++|+|++|
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 457888888888888654 4557788888888887743 26788888888888886554444 4777777777777777
Q ss_pred CCchhhhhhccCCCCCCEEEccCC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c 148 (583)
......+..++.+++|++|+|++|
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN 115 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred ccCccCHhHhcCCcCCCEEECCCC
Confidence 655444555667777777777664
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=3.3e-13 Score=129.26 Aligned_cols=129 Identities=22% Similarity=0.314 Sum_probs=89.1
Q ss_pred CCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772 182 CNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA 260 (583)
Q Consensus 182 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 260 (583)
.+++.|++++|.++.++. .+..+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 356666666677777665 5777788888888887766666777788888888888876554333344566777666666
Q ss_pred cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccccc
Q 036772 261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQNC 323 (583)
Q Consensus 261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c 323 (583)
++|.+... .|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|
T Consensus 112 ~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 112 NANKINCL-------------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEe-------------CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 66554431 24567778888888888888887764 3667777777777776
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=8.9e-14 Score=137.08 Aligned_cols=172 Identities=20% Similarity=0.259 Sum_probs=97.0
Q ss_pred CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772 67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146 (583)
Q Consensus 67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~ 146 (583)
+.+++.+++.++.++.++ .+..+++|++|++++|. +..++.+..+++|++|++++|.. ..++. ++.+++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence 344555566666666655 45667777777777763 44555666677777777776643 33333 6667777777776
Q ss_pred CCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccccc
Q 036772 147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC 226 (583)
Q Consensus 147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~ 226 (583)
+| .++.+|.... ++ |+.|++++|.++.++ .++.+++|+.|++++|.... ++ .+.
T Consensus 94 ~N-~l~~l~~~~~-~~---------------------L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~ 147 (263)
T 1xeu_A 94 RN-RLKNLNGIPS-AC---------------------LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLG 147 (263)
T ss_dssp SS-CCSCCTTCCC-SS---------------------CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGG
T ss_pred CC-ccCCcCcccc-Cc---------------------ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHc
Confidence 63 4444443212 33 344444445555554 35666666666666654322 22 334
Q ss_pred CCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772 227 NLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306 (583)
Q Consensus 227 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 306 (583)
.+++|++|++++ |.+. ++ ..+..+++|+.|++++|.++..|
T Consensus 148 ~l~~L~~L~L~~------------------------N~i~--------------~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 148 FLSKLEVLDLHG------------------------NEIT--------------NT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp GCTTCCEEECTT------------------------SCCC--------------BC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCCCCEEECCC------------------------CcCc--------------ch-HHhccCCCCCEEeCCCCcccCCc
Confidence 444444444443 3322 23 44666778888888888877665
Q ss_pred h
Q 036772 307 S 307 (583)
Q Consensus 307 ~ 307 (583)
.
T Consensus 189 ~ 189 (263)
T 1xeu_A 189 V 189 (263)
T ss_dssp E
T ss_pred c
Confidence 3
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.5e-13 Score=142.05 Aligned_cols=99 Identities=21% Similarity=0.167 Sum_probs=63.4
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-cc-CCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQ-NLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~-~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
-+.++++++.++.+|..+ ++.++.|+|++|+++.++.. +. .+++|+.|+|++|.+....+ .|..+++|++|+|++|
T Consensus 20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 357778888888887644 34577788888887777654 44 67777777777775444333 3666666777776665
Q ss_pred CCchhhhhhccCCCCCCEEEccC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~ 147 (583)
......+..+..+++|+.|+|++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCS
T ss_pred cCCcCCHHHhCCCcCCCEEECCC
Confidence 54333333455666666666655
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=3.7e-13 Score=128.94 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=82.3
Q ss_pred CcCEEeccCCCCccccc--cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772 183 NIENLDLSETAIEELPS--SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA 260 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 260 (583)
.++.|++++|.++.+++ .+..+++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555556666666632 2567777777777776655544556777777777777776655555555666666666655
Q ss_pred cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772 261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 323 (583)
++|.+... .|..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|
T Consensus 113 s~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 113 RSNRITCV-------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TTSCCCCB-------------CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCCeE-------------CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 55554331 245667777777777777777766 556677777777777765
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=4.9e-13 Score=128.91 Aligned_cols=77 Identities=19% Similarity=0.088 Sum_probs=43.4
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCA 125 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~ 125 (583)
.+.++.+++.++.+|..+ +++|++|++++|.++.+ +..+..+++|++|+|++|......+. |..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666677777777543 35666666666666655 33456666666666666643222222 4455555555555543
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=4.6e-13 Score=138.30 Aligned_cols=129 Identities=22% Similarity=0.296 Sum_probs=87.8
Q ss_pred CCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772 181 SCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259 (583)
Q Consensus 181 ~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 259 (583)
+.+|+.|+|++|.++.+++ .+..+++|++|+|++|......+..+..+++|++|++++|......|..+..+++|+.|+
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence 3456666666677776664 477778888888888765544455677788888888888766655566677777766666
Q ss_pred ccCCccccCccEEEeccCCCcccCccC----CCCCCCCEEEccCCCCcccCh-hhhccCc--ccccccccc
Q 036772 260 ANETAISQNLVDMSLVDCGITELPESL----GRSPSLKFLNLAENDFEKIPS-SIKQLSN--LLFLTLQNC 323 (583)
Q Consensus 260 l~~~~i~~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~--L~~L~L~~c 323 (583)
+++|.+. .+|..+ ..+++|+.|+|++|.++.+|. .+..++. |+.|++++|
T Consensus 143 L~~N~l~--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 143 LSQNQIS--------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CCSSCCC--------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCCcCC--------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 5555543 466543 568888888888888888874 4566665 377777765
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=3.4e-13 Score=130.05 Aligned_cols=145 Identities=23% Similarity=0.213 Sum_probs=65.9
Q ss_pred cEEEecCCCCcccccc-cCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCC
Q 036772 164 KVLYLGGCSNLKRFLE-ISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241 (583)
Q Consensus 164 ~~L~L~~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 241 (583)
+.++.++ ..+..+|. ...+|+.|++++|.++.+ |..+..+++|+.|+|++|......+..+..+++|++|++++|..
T Consensus 22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 3444443 23344443 223555555555555544 33345555555555555443222223344555555555555433
Q ss_pred CCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccCh-hhhccCccccccc
Q 036772 242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTL 320 (583)
Q Consensus 242 l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L 320 (583)
....+..+..+++|+.|++++|.+ +.+|..+..+++|+.|+|++|.++.+|. .+..+++|+.|++
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l--------------~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKL--------------TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC--------------CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CccChhHhCcchhhCeEeccCCcc--------------cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 322222334444444333333332 2345555555555555555555554442 2444555555555
Q ss_pred ccc
Q 036772 321 QNC 323 (583)
Q Consensus 321 ~~c 323 (583)
++|
T Consensus 167 ~~N 169 (229)
T 3e6j_A 167 FGN 169 (229)
T ss_dssp TTS
T ss_pred eCC
Confidence 544
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=5.4e-13 Score=127.76 Aligned_cols=74 Identities=19% Similarity=0.257 Sum_probs=39.6
Q ss_pred cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772 49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG 123 (583)
Q Consensus 49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~ 123 (583)
+.++.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|+.|+|++|+.....| .|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 456666666776665432 566666666666665544 35555555555555554333222 244444444444444
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=7.4e-14 Score=137.67 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=51.2
Q ss_pred ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEe
Q 036772 41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLD 120 (583)
Q Consensus 41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~ 120 (583)
+..+ ++|++|+++++.++.+|....+++|++|++++|.++.++. +..+++|+.|+|++|+. ..+|.+.. ++|++|+
T Consensus 37 ~~~l-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHH-TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC-SSCCEEE
T ss_pred hhhc-CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-CCcCcccc-CcccEEE
Confidence 3444 3566666666666655533355556666666665555544 55556666666665532 23333333 5555555
Q ss_pred eeCCCCchhhhhhccCCCCCCEEEccC
Q 036772 121 LVGCASLIEIHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 121 L~~~~~l~~~~~~i~~l~~L~~L~L~~ 147 (583)
+++|.... ++ .++.+++|+.|++++
T Consensus 113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHLKNLEILSIRN 137 (263)
T ss_dssp CCSSCCSB-SG-GGTTCTTCCEEECTT
T ss_pred ccCCccCC-Ch-hhcCcccccEEECCC
Confidence 55543222 21 344444444444444
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=1.5e-15 Score=165.92 Aligned_cols=192 Identities=20% Similarity=0.189 Sum_probs=126.0
Q ss_pred CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCC-------------CCCCC-CCCCCCCcCEEe-eeCCCCchhh
Q 036772 66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQ-------------LSRIP-DLSLALNLEWLD-LVGCASLIEI 130 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~-------------l~~~p-~l~~l~~L~~L~-L~~~~~l~~~ 130 (583)
..++|+.|+|++|.++.+|..+.++++|+.|++++|.. ....| .++.+++|+.|+ ++.+. ...+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchh
Confidence 57788999999999999999999999999999876641 11122 234444555554 22211 1111
Q ss_pred hh------hccC--CCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccc
Q 036772 131 HS------SIQH--LNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI 201 (583)
Q Consensus 131 ~~------~i~~--l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i 201 (583)
+. .+.. ...|+.|+|++| .++.+|. + .++ +|+.|++++|.++.+|..+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~---------------------~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLL---------------------LVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGT---------------------TCCEEECCSSCCCCCCGGG
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccc---------------------cCcEeecCcccccccchhh
Confidence 10 0000 113555555542 3444443 2 333 5555666667788888888
Q ss_pred cCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCCCcccEEEccCCccccCccEEEeccCCCc
Q 036772 202 GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNLESLKIMLANETAISQNLVDMSLVDCGIT 280 (583)
Q Consensus 202 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~ 280 (583)
+.+++|+.|+|++|.... +| .++.+++|++|++++|...+.. |..++.+++|+.|++++|.+..
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~------------- 547 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ------------- 547 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-------------
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-------------
Confidence 999999999999876654 67 7888999999999988665554 8888888888888777776654
Q ss_pred ccCccC----CCCCCCCEEEc
Q 036772 281 ELPESL----GRSPSLKFLNL 297 (583)
Q Consensus 281 ~lp~~l----~~l~~L~~L~L 297 (583)
+|+.. ..+++|+.|++
T Consensus 548 -~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 -EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -SSSCTTHHHHHCTTCSEEEC
T ss_pred -CccHHHHHHHHCcccCccCC
Confidence 44433 33788888864
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2.6e-13 Score=123.99 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=104.6
Q ss_pred CCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772 182 CNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259 (583)
Q Consensus 182 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 259 (583)
.+++.|++++|.++ .+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777778887 788878888999999999887544 3 6788889999999999877666777777777777766
Q ss_pred ccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccCh----hhhccCcccccccccccccccCC
Q 036772 260 ANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIPS----SIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 260 l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
+++|.+. ++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++| .+.++|
T Consensus 102 Ls~N~l~--------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLK--------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp CBSSSCC--------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred ccCCccC--------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence 6666544 455 678889999999999999998886 6888999999999998 345554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=5.3e-13 Score=119.32 Aligned_cols=125 Identities=21% Similarity=0.206 Sum_probs=101.3
Q ss_pred CCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772 182 CNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259 (583)
Q Consensus 182 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 259 (583)
++++.|++++|.++ .+|..+..+++|+.|++++|..... ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777788888887 7888888999999999999865443 6788899999999999877766888777788877777
Q ss_pred ccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccCh----hhhccCccccccccc
Q 036772 260 ANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIPS----SIKQLSNLLFLTLQN 322 (583)
Q Consensus 260 l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~ 322 (583)
+++|.+. +++ ..++.+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~--------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIK--------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCC--------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCC--------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6666554 344 778899999999999999998876 688899999998864
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1.1e-13 Score=155.84 Aligned_cols=118 Identities=25% Similarity=0.271 Sum_probs=55.5
Q ss_pred cccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCC
Q 036772 84 WNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLD 161 (583)
Q Consensus 84 ~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~ 161 (583)
+..+..+++|+.|+|++|... .+| .+..+++|++|+|++|... .+|..++.+++|+.|+|++| .++.+|..+ .++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 334455555555555555433 232 3444555555555554332 44555555555555555552 233444443 333
Q ss_pred CccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccc
Q 036772 162 SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL 225 (583)
Q Consensus 162 ~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 225 (583)
+|++|+|++ |.++.+|..++.+++|+.|+|++|.....+|..+
T Consensus 294 ~L~~L~L~~---------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 QLKYFYFFD---------------------NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TCSEEECCS---------------------SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCEEECCC---------------------CCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 333333333 4445555555556666666666655544444444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.8e-12 Score=118.36 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=41.8
Q ss_pred CCceEEEccCCChh--hhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772 68 EHLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145 (583)
Q Consensus 68 ~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L 145 (583)
++|++|++++|.+. .+|..+..+++|++|++++|.... ++.+..+++|++|++++|.....+|..++.+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555554 444445555666666666654332 244555556666666655544334444445555555555
Q ss_pred cC
Q 036772 146 GR 147 (583)
Q Consensus 146 ~~ 147 (583)
++
T Consensus 103 s~ 104 (168)
T 2ell_A 103 SG 104 (168)
T ss_dssp BS
T ss_pred cC
Confidence 55
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=8.8e-13 Score=148.47 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=53.4
Q ss_pred hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCccccccccCCCC
Q 036772 131 HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIEELPSSIGNLSR 206 (583)
Q Consensus 131 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~ 206 (583)
+..+..+++|+.|+|++| .+..+|..+ .+++|++|+|++|. +..+|. .+.+|+.|+|++|.++.+|..++.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 344455555555555542 233444433 34444444444421 112221 112333334444455555555666666
Q ss_pred ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc
Q 036772 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI 249 (583)
Q Consensus 207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l 249 (583)
|++|+|++|.. ..+|..+.++++|++|+|++|...+.+|..+
T Consensus 295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666543 3455556666666666666655555555443
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=115.45 Aligned_cols=123 Identities=20% Similarity=0.174 Sum_probs=104.0
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCAS 126 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~ 126 (583)
-++++++++.++.+|..+ +++|++|++++|.++.+|..+..+++|+.|+|++|.+....+ .|..+++|++|+|++|..
T Consensus 12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 368899999999999764 468999999999999999889999999999999997666555 489999999999999876
Q ss_pred chhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCC
Q 036772 127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCS 172 (583)
Q Consensus 127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~ 172 (583)
....+..+..+++|+.|+|++ +.++.+|.. + .+++|+.|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 665666899999999999998 567777775 3 68888888888754
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.1e-11 Score=116.00 Aligned_cols=124 Identities=20% Similarity=0.154 Sum_probs=96.3
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc--ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC 124 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~ 124 (583)
-+.++++++.++.+|..+. .+|++|++++|+++.++.. +..+++|++|+|++|.+....| .|..+++|++|+|++|
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3788888888988887653 3889999999998888754 7889999999999987766655 4888899999999988
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCS 172 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~ 172 (583)
......+..++.+++|++|+|++|......|..+ .+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 7665555668888999999998854433445555 67888888887754
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.4e-12 Score=114.00 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=47.0
Q ss_pred CCccEEEecCCCCC--CCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772 46 NELRYFQWDGYPLK--SLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL 121 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~--~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L 121 (583)
++|+.|++++|.++ .+|..+ .+++|++|++++|.++.+ ..+..+++|++|++++|.....+|. +..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 45566666665555 455443 445555555555555544 3344455555555555543333332 223444444444
Q ss_pred eCCCCchh-hhhhccCCCCCCEEEccC
Q 036772 122 VGCASLIE-IHSSIQHLNKLVFLNLGR 147 (583)
Q Consensus 122 ~~~~~l~~-~~~~i~~l~~L~~L~L~~ 147 (583)
++|..... .+..++.+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 44432221 123444444444444444
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.7e-11 Score=114.56 Aligned_cols=123 Identities=21% Similarity=0.233 Sum_probs=62.3
Q ss_pred CEEeccCCCCccccccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772 185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 185 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 263 (583)
+.++++++.++++|..+.. +|+.|++++|......+. .+..+++|++|++++|...+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3455555555555543322 555555555543332222 2455555555555555544444555555555554444444
Q ss_pred ccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772 264 AISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c 323 (583)
.+.. ++ ..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|
T Consensus 89 ~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKE--------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCE--------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCc--------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 4332 22 3355556666666666665533 444555555666555554
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=9e-12 Score=114.70 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=74.4
Q ss_pred cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc-cCCCCcccEEEccC
Q 036772 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE-IGNLESLKIMLANE 262 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~ 262 (583)
|+.|++++|.++.+|......++|++|++++|.... + ..+..+++|++|++++|... .+|.. +..+++|+.|++++
T Consensus 21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCS
T ss_pred ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCC
Confidence 344444444555554322222366666666654433 2 45556666666666665433 33332 35555655555544
Q ss_pred CccccCccEEEeccCCCcccCc--cCCCCCCCCEEEccCCCCcccChh----hhccCccccccccccc
Q 036772 263 TAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAENDFEKIPSS----IKQLSNLLFLTLQNCK 324 (583)
Q Consensus 263 ~~i~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~ 324 (583)
|.+ .++|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++++
T Consensus 98 N~i--------------~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSL--------------VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCC--------------CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcC--------------CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 443 33554 677788888888888888888875 7888888888888763
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=4.6e-11 Score=111.78 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=43.3
Q ss_pred CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE 262 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 262 (583)
+++.|++++|.++.+|..+..+++|+.|++++|......+..+.++++|++|++++|......|..+..+++|+.|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 44555555555666665566666666666666555444444555566666666665544433333444444444444433
Q ss_pred C
Q 036772 263 T 263 (583)
Q Consensus 263 ~ 263 (583)
|
T Consensus 112 N 112 (193)
T 2wfh_A 112 N 112 (193)
T ss_dssp S
T ss_pred C
Confidence 3
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=2.1e-11 Score=124.07 Aligned_cols=211 Identities=12% Similarity=0.107 Sum_probs=99.9
Q ss_pred CCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC---CCCcCCCc-C-CCCC
Q 036772 90 LAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI---SLKSLPTG-I-NLDS 162 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~---~l~~lp~~-~-~l~~ 162 (583)
+++|+.|+|.+ .++.++ .|..+++|+.|++.++.....-+..+..+.++..+.+.... ....+... + .+..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666666 233333 36666666666666654433333455555555544443210 11111111 1 3334
Q ss_pred cc-EEEecCCCCcccccc----cCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEc
Q 036772 163 LK-VLYLGGCSNLKRFLE----ISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL 236 (583)
Q Consensus 163 L~-~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l 236 (583)
|+ .+.+.....+..... ...++..+.+.++-...-... ...+++|+.+++++|.....-+..+.++.+|+.|++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 333333222211110 112233333332211100000 112455666666654433333344555666666666
Q ss_pred cCCCCCCccc-cccCCCCccc-EEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-hhhcc
Q 036772 237 SGCLKLEKLP-EEIGNLESLK-IMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQL 312 (583)
Q Consensus 237 ~~c~~l~~lp-~~l~~l~~L~-~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l 312 (583)
..+ +..++ ..+.++++|+ .+.+.+ . ++.++ ..+..+++|+.|++++|.++.++. .+..+
T Consensus 258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~-~--------------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 258 PHN--LKTIGQRVFSNCGRLAGTLELPA-S--------------VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp CTT--CCEECTTTTTTCTTCCEEEEECT-T--------------CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred Ccc--cceehHHHhhCChhccEEEEEcc-c--------------ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 553 33333 3455555555 554443 2 22343 567788888888888888887765 46677
Q ss_pred Ccccccc
Q 036772 313 SNLLFLT 319 (583)
Q Consensus 313 ~~L~~L~ 319 (583)
++|+.++
T Consensus 321 ~~L~~ly 327 (329)
T 3sb4_A 321 VPSKLIY 327 (329)
T ss_dssp CCCCEEE
T ss_pred cchhhhc
Confidence 7777664
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=7e-12 Score=115.43 Aligned_cols=124 Identities=17% Similarity=0.219 Sum_probs=91.5
Q ss_pred CCccEEEecCCCCCCCCCCCCC-CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772 46 NELRYFQWDGYPLKSLPSKNIP-EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG 123 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~~~~-~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 123 (583)
.+|+.|++++|.++.+|..... ++|++|++++|.++.+ ..+..+++|++|+|++|......+. +..+++|++|++++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 5788888888888888665444 3888888888888877 6688888888888888865543334 47788888888888
Q ss_pred CCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCc----C-CCCCccEEEecCCC
Q 036772 124 CASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTG----I-NLDSLKVLYLGGCS 172 (583)
Q Consensus 124 ~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L~~c~ 172 (583)
|.. ..+|. .++.+++|+.|++++| .+..+|.. + .+++|+.|++++|.
T Consensus 98 N~i-~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSL-VELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCC-CCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcC-CcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 764 55565 6778888888888884 45666664 3 67777777777654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.1e-10 Score=107.26 Aligned_cols=124 Identities=22% Similarity=0.277 Sum_probs=77.8
Q ss_pred cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 263 (583)
.+.++++++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 345666666677666543 357777777776654444445566777777777776544333344566666665555555
Q ss_pred ccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhh-hccCcccccccccc
Q 036772 264 AISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNC 323 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c 323 (583)
.+. ++|. .+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|
T Consensus 87 ~l~--------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 87 KLQ--------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCC--------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred Ccc--------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 443 3443 4567777777777777777776653 56777777777766
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.9e-10 Score=105.85 Aligned_cols=124 Identities=25% Similarity=0.274 Sum_probs=92.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC 124 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~ 124 (583)
..+.++++++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|......+. +..+++|++|++++|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3567888888888888544 46888888888888877654 57888899999988865544443 678888888888887
Q ss_pred CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCS 172 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~ 172 (583)
......+..++.+++|+.|++++| .++.+|... .+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 655444455788888999998884 666777654 57888888887764
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=8.8e-10 Score=112.03 Aligned_cols=96 Identities=22% Similarity=0.341 Sum_probs=58.3
Q ss_pred cCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccc-cccccCCCCCc-EEEccCCCCCCcc-ccccCCCCcccEEE
Q 036772 184 IENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQ-YLFLSGCLKLEKL-PEEIGNLESLKIML 259 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~-~L~l~~c~~l~~l-p~~l~~l~~L~~L~ 259 (583)
|+.+++++|.++.+|. .+..+++|+.+++.++ +..+ +..|.++.+|+ .+++.. .+..+ +..+.++++|+.++
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEE
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEE
Confidence 3334444455666654 3677777777777765 3333 34567777777 777776 33333 35667777766666
Q ss_pred ccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEc
Q 036772 260 ANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNL 297 (583)
Q Consensus 260 l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L 297 (583)
++.+.+. .++ ..+..+++|+.+..
T Consensus 304 l~~n~i~--------------~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKIT--------------TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCC--------------EECTTTTCTTCCCCEEEC
T ss_pred eCCCccC--------------ccchhhhcCCcchhhhcc
Confidence 5555443 355 46777888887753
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=6.7e-10 Score=101.93 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=80.6
Q ss_pred cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 263 (583)
-+.++++++.++.+|..+. ++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3567888888888887664 78899999988776666778888888888888887544433334567777776666665
Q ss_pred ccccCccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCcccChhhh
Q 036772 264 AISQNLVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKIPSSIK 310 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~i~ 310 (583)
.+. .+|.. +..+++|+.|+|++|.+...+..+.
T Consensus 92 ~l~--------------~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~ 125 (174)
T 2r9u_A 92 HLK--------------SIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125 (174)
T ss_dssp CCC--------------CCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred ccc--------------eeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence 544 46654 7788888888888888876665443
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=1.2e-09 Score=99.86 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=80.0
Q ss_pred CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE 262 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 262 (583)
..+.++++++.++.+|..+. ++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 34678888888888887663 7889999998877766677888888899999888765544444567777777666666
Q ss_pred CccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccC
Q 036772 263 TAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIP 306 (583)
Q Consensus 263 ~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp 306 (583)
|.+. .+|. .+..+++|+.|+|++|.++..+
T Consensus 88 N~l~--------------~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLK--------------SIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCC--------------CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccC--------------EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 5544 3654 5788888899999888876444
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.5e-11 Score=115.48 Aligned_cols=120 Identities=26% Similarity=0.230 Sum_probs=61.9
Q ss_pred CCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEcc
Q 036772 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLAN 261 (583)
Q Consensus 182 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~ 261 (583)
.+|+.|++++|.++.+| .+..+++|+.|++++|... .+|..+..+++|++|++++|... .+| .+..+++|+
T Consensus 48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~----- 118 (198)
T 1ds9_A 48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLR----- 118 (198)
T ss_dssp TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSS-----
T ss_pred CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCC-----
Confidence 45555555555555555 4555555555555554332 34444444455555555554322 233 233344433
Q ss_pred CCccccCccEEEeccCCCcccCc--cCCCCCCCCEEEccCCCCcccChh-----------hhccCcccccc
Q 036772 262 ETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAENDFEKIPSS-----------IKQLSNLLFLT 319 (583)
Q Consensus 262 ~~~i~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~-----------i~~l~~L~~L~ 319 (583)
.|++++|.+++++. .+..+++|++|++++|.++..+.. +..+++|+.|+
T Consensus 119 ---------~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 ---------VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ---------EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ---------EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 33444444444443 566777777777777776543221 45566666555
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=2.5e-09 Score=97.70 Aligned_cols=101 Identities=19% Similarity=0.134 Sum_probs=66.0
Q ss_pred CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772 47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC 124 (583)
Q Consensus 47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~ 124 (583)
..+.++++++.++.+|..+ +++|++|++++|.++.++ ..+..+++|++|+|++|++....+. |..+++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3567778888888877655 367777888888777763 4477777777777777765443333 566777777777776
Q ss_pred CCchhhhhhccCCCCCCEEEccCC
Q 036772 125 ASLIEIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 125 ~~l~~~~~~i~~l~~L~~L~L~~c 148 (583)
......+..+..+++|+.|+|++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 543333334666666666666653
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.95 E-value=4.6e-08 Score=102.02 Aligned_cols=181 Identities=11% Similarity=0.115 Sum_probs=89.5
Q ss_pred CCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEee
Q 036772 46 NELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDL 121 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L 121 (583)
..++.+.+.. .++.++.. |.-.+|+.+.+..+ ++.+... |.+ .+|+.+.+.. .+..++ .|..+++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeec
Confidence 3444444432 24444433 32235666666554 5555433 444 3566666664 233333 3666666666666
Q ss_pred eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc---CCCcCEEeccCCCCcc
Q 036772 122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI---SCNIENLDLSETAIEE 196 (583)
Q Consensus 122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~---~~~L~~L~L~~~~i~~ 196 (583)
.++. +..++...-...+|+.+.+.. .++.++... ++++|+.+++..+ +..+... -.+|+.+.+. +.++.
T Consensus 188 ~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 188 SKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTN 261 (401)
T ss_dssp TTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCE
T ss_pred CCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccE
Confidence 6543 333443222246667766653 355555443 5666666666542 2221111 1345555552 33455
Q ss_pred cc-ccccCCCCccEEeeeCCCCC-----ccccccccCCCCCcEEEcc
Q 036772 197 LP-SSIGNLSRLVRLDLTNCSRL-----KSVSNSLCNLKSLQYLFLS 237 (583)
Q Consensus 197 lp-~~i~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~l~ 237 (583)
++ ..+.++++|+.+.+.++... ..-+..+.++++|+.+.+.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 53 24666677777776654332 1223345555556655554
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.93 E-value=4.1e-09 Score=96.64 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=65.0
Q ss_pred ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772 48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCA 125 (583)
Q Consensus 48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~ 125 (583)
-+.++++++.++++|..+. ++|++|+|++|.++.++ ..+..+++|++|+|++|++....+. |..+++|++|+|++|.
T Consensus 14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3677788888888877553 67788888888777763 4577777777777777754443333 5667777777777654
Q ss_pred CchhhhhhccCCCCCCEEEccCC
Q 036772 126 SLIEIHSSIQHLNKLVFLNLGRC 148 (583)
Q Consensus 126 ~l~~~~~~i~~l~~L~~L~L~~c 148 (583)
.....+..++.+++|+.|+|++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 43222233666666666666663
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=3.8e-12 Score=119.66 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=71.7
Q ss_pred cCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCc
Q 036772 37 HSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL 116 (583)
Q Consensus 37 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L 116 (583)
+|..+..+ ++|++|++++|.++.+|....+++|++|++++|.++.+|..+..+++|++|++++|+.. .+|.+..+++|
T Consensus 40 l~~~~~~l-~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~~~~~l~~L 117 (198)
T 1ds9_A 40 MDATLSTL-KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSGIEKLVNL 117 (198)
T ss_dssp CHHHHHHT-TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHHHHHHHHHS
T ss_pred hhHHHhcC-CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCCccccCCCC
Confidence 33366666 47777777777777777222667777777777777777666666677777777777433 35556666777
Q ss_pred CEEeeeCCCCchhhh-hhccCCCCCCEEEccCCC
Q 036772 117 EWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCI 149 (583)
Q Consensus 117 ~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~ 149 (583)
++|++++|.....-+ ..+..+++|+.|++++|.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 777777765432111 356677777777777653
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=2e-07 Score=97.18 Aligned_cols=252 Identities=12% Similarity=0.162 Sum_probs=171.7
Q ss_pred CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l 90 (583)
.+.+++...+.++ ...++. .|.. .+|+.+.+..+ ++.++.. |.-.+|+++.++. .++.+... |.++
T Consensus 111 ~~~~l~~i~ip~~-------i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 111 ILKGYNEIILPNS-------VKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp ECSSCSEEECCTT-------CCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTC
T ss_pred ecCCccEEEECCc-------cCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCc
Confidence 3456666666442 334443 3333 36899988765 7777765 4445799999986 67777644 8899
Q ss_pred CCccEEeccCCCCCCCCC-C-CCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEE
Q 036772 91 AALKRLNLSYCKQLSRIP-D-LSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVL 166 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L 166 (583)
.+|+.++|+.|.. ..++ . |. ..+|+.+.|..+ +..++ ..+.++++|+.+++.. .++.++... .-.+|+.+
T Consensus 180 ~~L~~l~l~~n~l-~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 180 YNLKKADLSKTKI-TKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTCCEEECTTSCC-SEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEE
T ss_pred ccCCeeecCCCcc-eEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEE
Confidence 9999999988754 3444 3 54 588999999853 44444 5678899999999976 466666655 44789999
Q ss_pred EecCCCCccccc----ccCCCcCEEeccCCCCc-----ccc-ccccCCCCccEEeeeCCCCCccc-cccccCCCCCcEEE
Q 036772 167 YLGGCSNLKRFL----EISCNIENLDLSETAIE-----ELP-SSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLF 235 (583)
Q Consensus 167 ~L~~c~~l~~~~----~~~~~L~~L~L~~~~i~-----~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~ 235 (583)
.+.+ .+..++ ....+|+.+.+.++.+. .++ ..+..+++|+.+.+.++ +..+ ...+.++.+|+.+.
T Consensus 254 ~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 254 KLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEE
T ss_pred EeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEE
Confidence 8854 344333 33468889988887665 454 35889999999999852 4444 45778899999999
Q ss_pred ccCCCCCCcc-ccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCC-CCCCEEEccCCCCc
Q 036772 236 LSGCLKLEKL-PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRS-PSLKFLNLAENDFE 303 (583)
Q Consensus 236 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l-~~L~~L~Ls~n~l~ 303 (583)
+..+ +..+ ...+.++ +|+.+.+.++.+.. ++ ..+..+ .+++.|.+..+.+.
T Consensus 330 lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~--------------l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 330 IPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQ--------------VFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTT--CCEECTTSSSSS-CCCEEEECCSSCCB--------------CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcc--------------cccccccCCCCCccEEEeCHHHHH
Confidence 9653 4433 3456667 77777776665443 43 455566 47899999887755
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=6.5e-07 Score=93.14 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=37.8
Q ss_pred cccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCC
Q 036772 40 CLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYC 101 (583)
Q Consensus 40 ~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~ 101 (583)
.|... .+|+.+.+.. .++.++.. | .+.+|+.++++.+ ++.+... +..+.+|+.+.+..+
T Consensus 66 AF~~c-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 66 AFQGC-RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM 127 (394)
T ss_dssp TTTTC-TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred HhhCC-CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence 34444 4788888753 36777654 4 6778888888754 5555443 677777777666543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=8.1e-08 Score=98.05 Aligned_cols=105 Identities=18% Similarity=0.091 Sum_probs=78.2
Q ss_pred EEeccCC-CCccccccccCCCCccEEeeeC-CCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772 186 NLDLSET-AIEELPSSIGNLSRLVRLDLTN-CSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET 263 (583)
Q Consensus 186 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 263 (583)
.++++++ .++.+|. +..+++|+.|+|++ |......+..+.++++|+.|+|++|...+..|..+.++++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677776 7888898 88899999999986 5554444567888999999999998766666667788888777776666
Q ss_pred ccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772 264 AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI 305 (583)
Q Consensus 264 ~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 305 (583)
.+. .+|..+.....|+.|+|.+|.+...
T Consensus 91 ~l~--------------~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALE--------------SLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp CCS--------------CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred ccc--------------eeCHHHcccCCceEEEeeCCCccCC
Confidence 554 4665443333499999999988743
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=2.9e-09 Score=109.98 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=12.7
Q ss_pred CccCCCCCCCCEEEccCCCCc
Q 036772 283 PESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 283 p~~l~~l~~L~~L~Ls~n~l~ 303 (583)
...+...++|++|+|++|.|+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 334445566677777777665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.58 E-value=1.1e-08 Score=105.53 Aligned_cols=156 Identities=21% Similarity=0.202 Sum_probs=92.5
Q ss_pred CCCccEEEecCCCCccc----ccc----cCCCcCEEeccCCCCcc--ccccccCCCCccEEeeeCCCCCccccccc----
Q 036772 160 LDSLKVLYLGGCSNLKR----FLE----ISCNIENLDLSETAIEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSL---- 225 (583)
Q Consensus 160 l~~L~~L~L~~c~~l~~----~~~----~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l---- 225 (583)
+++|++|++++|..-.. +.. ...+|++|+|++|.++. +..-...+++|+.|+|++|.........+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45677888877653211 111 12467777777777653 12212234567777777775543322222
Q ss_pred -cCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCC
Q 036772 226 -CNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEN 300 (583)
Q Consensus 226 -~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n 300 (583)
...+.|++|++++|.... .++..+..+++|++|++++|.+.+. ....++..+...++|++|+|++|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~---------g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE---------GLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH---------HHHHHHHHGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH---------HHHHHHHHHhcCCCcCeEECCCC
Confidence 235667777777765422 2334445555666555555554320 00014556677789999999999
Q ss_pred CCcc-----cChhhhccCccccccccccc
Q 036772 301 DFEK-----IPSSIKQLSNLLFLTLQNCK 324 (583)
Q Consensus 301 ~l~~-----lp~~i~~l~~L~~L~L~~c~ 324 (583)
.++. ++..+...++|+.|+|++|.
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 9973 44556678999999999984
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=2.2e-07 Score=94.79 Aligned_cols=96 Identities=21% Similarity=0.135 Sum_probs=48.9
Q ss_pred EccCC-ChhhhcccccCCCCccEEeccC-CCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC
Q 036772 74 EMPHS-NIEQLWNGVQNLAALKRLNLSY-CKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS 150 (583)
Q Consensus 74 ~L~~~-~l~~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~ 150 (583)
+++++ +++.+|. +..+++|+.|+|++ |.+....+ .|..+++|++|+|++|......+..++.+++|+.|+|++ +.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence 44444 4555555 55555555555553 43222222 255555555555555544333344556666666666666 44
Q ss_pred CCcCCCcC-CCCCccEEEecCC
Q 036772 151 LKSLPTGI-NLDSLKVLYLGGC 171 (583)
Q Consensus 151 l~~lp~~~-~l~~L~~L~L~~c 171 (583)
++.+|..+ ....|+.|+|.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 55555543 2223666666553
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=2e-07 Score=95.57 Aligned_cols=129 Identities=17% Similarity=0.204 Sum_probs=71.3
Q ss_pred cccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhcc--CCCCCCEEEccCCC-------CCCcCCC
Q 036772 86 GVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQ--HLNKLVFLNLGRCI-------SLKSLPT 156 (583)
Q Consensus 86 ~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~c~-------~l~~lp~ 156 (583)
.+..+|+|+.|+|++|... .++.+. .++|++|+|..|.........+. .+++|+.|+|+.+. .+..+..
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3567788999998887433 233343 78899999988775554444443 68889998885311 1212211
Q ss_pred cC---CCCCccEEEecCCCCcccc----c--ccCCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeCCC
Q 036772 157 GI---NLDSLKVLYLGGCSNLKRF----L--EISCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTNCS 216 (583)
Q Consensus 157 ~~---~l~~L~~L~L~~c~~l~~~----~--~~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~ 216 (583)
.+ .+++|++|++.+|...... . ..+++|+.|+|+.|.++. ++..+..+++|+.|++++|.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 22 3677888877776543211 1 123345555555554442 22223344455555554443
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=3e-05 Score=80.46 Aligned_cols=273 Identities=15% Similarity=0.092 Sum_probs=128.5
Q ss_pred CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhcc-cccC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWN-GVQN 89 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~-~~~~ 89 (583)
++.+|+.+.|..+ ...+.. .|... .+|+.+++..+ ++.++.. | .+..|+.+.++.+ ++.+.. .+.+
T Consensus 69 ~c~~L~~i~lp~~-------i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPST-------VREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCTT-------CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred CCCCceEEEeCCC-------ccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 8899999999643 344543 55555 58999988643 6666544 3 5666776666543 222221 1333
Q ss_pred CCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEE
Q 036772 90 LAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVL 166 (583)
Q Consensus 90 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L 166 (583)
+..++......... .....|..+.+|+.+.+.+. ...++ ..+.++.+|+.+.+.. .++.++... .+..|+.+
T Consensus 139 ~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 139 CDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENM 213 (394)
T ss_dssp CCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBC
T ss_pred ccccccccCccccc-cchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC--CceEeCchhhcccccccee
Confidence 33222222111110 01112445555555555432 11222 2344455555554432 133332222 33344433
Q ss_pred EecCCC--------------------Ccccc----cccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccc
Q 036772 167 YLGGCS--------------------NLKRF----LEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS 222 (583)
Q Consensus 167 ~L~~c~--------------------~l~~~----~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 222 (583)
.+.... .+..+ ......++.+.+..+...--...+..+..++.+...... ...
T Consensus 214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~ 290 (394)
T 4fs7_A 214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPE 290 (394)
T ss_dssp CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECT
T ss_pred ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecc
Confidence 332211 01111 111123444444333221112223444444444443211 111
Q ss_pred ccccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCC
Q 036772 223 NSLCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAEN 300 (583)
Q Consensus 223 ~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n 300 (583)
..+..+.+|+.+.+... +..++ ..+.++.+|+.+.+.. .++.+. ..+..+++|+.+++..+
T Consensus 291 ~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~---------------~v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY---------------LVEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT---------------TCCEECTTTTTTCTTCCEECCCTT
T ss_pred ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC---------------cccEEhHHhccCCCCCCEEEECcc
Confidence 23445556666655432 22222 2344555555554432 234454 56778899999998765
Q ss_pred CCcccCh-hhhccCccccccccc
Q 036772 301 DFEKIPS-SIKQLSNLLFLTLQN 322 (583)
Q Consensus 301 ~l~~lp~-~i~~l~~L~~L~L~~ 322 (583)
++.++. .+..|.+|+.+++..
T Consensus 354 -l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 354 -LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp -CCEECTTTBTTCTTCCEEEEEG
T ss_pred -ccEehHHHhhCCCCCCEEEECC
Confidence 776653 567788888888764
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=7.1e-07 Score=91.45 Aligned_cols=36 Identities=11% Similarity=0.357 Sum_probs=26.8
Q ss_pred CCCCCCEEEccCCCCcc-----cChhhhccCcccccccccc
Q 036772 288 RSPSLKFLNLAENDFEK-----IPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 288 ~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c 323 (583)
.+++|++|+|+.|.++. ++..+..+++|+.|++++|
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 46788888888888763 4455567788888888877
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=1.8e-06 Score=78.26 Aligned_cols=94 Identities=16% Similarity=0.318 Sum_probs=54.9
Q ss_pred CCCCCC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCC--CCCCC----CCcCEEeeeCCCCchh-h
Q 036772 60 SLPSKN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIP--DLSLA----LNLEWLDLVGCASLIE-I 130 (583)
Q Consensus 60 ~lp~~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l----~~L~~L~L~~~~~l~~-~ 130 (583)
.+|... ...+|++||++++.++.. ...+..+++|+.|+|++|..+++.. .++.+ ++|++|+|++|..++. -
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 345443 334677777777766532 1335677777777777776555422 23332 3577777777765443 2
Q ss_pred hhhccCCCCCCEEEccCCCCCCc
Q 036772 131 HSSIQHLNKLVFLNLGRCISLKS 153 (583)
Q Consensus 131 ~~~i~~l~~L~~L~L~~c~~l~~ 153 (583)
-..+..+++|++|+|++|..+++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 23455666777777776666554
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2.4e-06 Score=77.44 Aligned_cols=95 Identities=14% Similarity=0.215 Sum_probs=67.4
Q ss_pred hhcccccCCCCccEEeccCCCCCCC-CCCCCCCCCcCEEeeeCCCCchh-hhhhccCC----CCCCEEEccCCCCCCcCC
Q 036772 82 QLWNGVQNLAALKRLNLSYCKQLSR-IPDLSLALNLEWLDLVGCASLIE-IHSSIQHL----NKLVFLNLGRCISLKSLP 155 (583)
Q Consensus 82 ~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~~~~l~~-~~~~i~~l----~~L~~L~L~~c~~l~~lp 155 (583)
.+|.....-.+|+.||+++|..... +..+..+++|++|+|++|..++. --..+..+ ++|++|+|++|..+++-.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4455443445799999999973322 33578899999999999986654 23455554 479999999998887532
Q ss_pred Cc-C-CCCCccEEEecCCCCccc
Q 036772 156 TG-I-NLDSLKVLYLGGCSNLKR 176 (583)
Q Consensus 156 ~~-~-~l~~L~~L~L~~c~~l~~ 176 (583)
-. + .+++|++|++++|..++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 11 1 689999999999987653
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.96 E-value=0.00071 Score=69.96 Aligned_cols=77 Identities=8% Similarity=0.065 Sum_probs=31.8
Q ss_pred CCCCceEEEccCC---Chhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-hhccCCC
Q 036772 66 IPEHLVSLEMPHS---NIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-SSIQHLN 138 (583)
Q Consensus 66 ~~~~L~~L~L~~~---~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~ 138 (583)
.+.+|+.+.+..+ .++.+... |..+.+|+.+.+..+ ++.++ .|..+.+|+.+.+... ...+. ..+..+.
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCY 160 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceeccc
Confidence 3455555554433 23333222 444444444444332 22222 2444555555555431 11111 2344455
Q ss_pred CCCEEEcc
Q 036772 139 KLVFLNLG 146 (583)
Q Consensus 139 ~L~~L~L~ 146 (583)
+|+.+.+.
T Consensus 161 ~L~~i~~~ 168 (394)
T 4gt6_A 161 SLHTVTLP 168 (394)
T ss_dssp TCCEEECC
T ss_pred cccccccc
Confidence 55555553
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.0012 Score=68.21 Aligned_cols=275 Identities=12% Similarity=0.173 Sum_probs=165.0
Q ss_pred CCC-CcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCC---CCCCCCC-C-CCCCceEEEccCCChhhhccc
Q 036772 14 RMR-RLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYP---LKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG 86 (583)
Q Consensus 14 ~m~-~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~ 86 (583)
+++ .|+...|..+ ...+. ..|... .+|+.+.+..+. ++.++.. | .+.+|+.+.+..+ ++.+...
T Consensus 61 ~~~~~L~sI~iP~s-------vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT-------VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp TCCSCCCEEEECTT-------CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred CCCCcCEEEEECCC-------eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 453 4888888542 33444 355555 589999998763 6667654 3 6778888877654 5555443
Q ss_pred -ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCC
Q 036772 87 -VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLD 161 (583)
Q Consensus 87 -~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~ 161 (583)
+..+.+|+.+.+..+ ...++ .|..+.+|+.+.+... +..+....-...+|+.+.+.. .+..+... + .+.
T Consensus 132 aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~ 205 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECF 205 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCT
T ss_pred hhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC--cccccccchhhhcc
Confidence 788999999999764 33333 4788899999999763 344443322346788888764 23333222 2 566
Q ss_pred CccEEEecCCCCc--cc------------ccc--cCCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcccccc
Q 036772 162 SLKVLYLGGCSNL--KR------------FLE--ISCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSVSNS 224 (583)
Q Consensus 162 ~L~~L~L~~c~~l--~~------------~~~--~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~ 224 (583)
+++.......... .. +.. ....+..+.+. +.++.+. ..+..+..|+.+.+.+.. ...-...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~a 283 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIGTGA 283 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEECTTT
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ceecCcc
Confidence 6666655432110 00 000 00112222222 1222232 246778888888886532 2223456
Q ss_pred ccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCC
Q 036772 225 LCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDF 302 (583)
Q Consensus 225 l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l 302 (583)
+.++..|+.+.+.. .+..++ ..+.++.+|+.+.+..+ ++.+. ..+..+.+|+.+.|.. .+
T Consensus 284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~---------------v~~I~~~aF~~C~~L~~i~ip~-sv 345 (394)
T 4gt6_A 284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG---------------ITQILDDAFAGCEQLERIAIPS-SV 345 (394)
T ss_dssp TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT---------------CCEECTTTTTTCTTCCEEEECT-TC
T ss_pred cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc---------------ccEehHhHhhCCCCCCEEEECc-cc
Confidence 77788999988863 344444 35677788887776542 23343 4677888999998864 36
Q ss_pred cccCh-hhhccCcccccccccc
Q 036772 303 EKIPS-SIKQLSNLLFLTLQNC 323 (583)
Q Consensus 303 ~~lp~-~i~~l~~L~~L~L~~c 323 (583)
+.++. .+..|++|+.+++.+.
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEhHhHhhCCCCCCEEEECCc
Confidence 77753 4677888888887764
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.78 E-value=9.1e-06 Score=74.88 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=73.5
Q ss_pred ccccccCCCCccEEeeeCC-CCCcc----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCcccc
Q 036772 197 LPSSIGNLSRLVRLDLTNC-SRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQ 267 (583)
Q Consensus 197 lp~~i~~l~~L~~L~L~~~-~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~ 267 (583)
+...+...+.|++|+|++| ..... +...+...++|++|++++|.... .+.+.+...++|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344667788888888887 44322 44556667788888888876542 223334444555555555554432
Q ss_pred CccEEEeccCCCcccCccCCCCCCCCEEEc--cCCCCcc-----cChhhhccCcccccccccc
Q 036772 268 NLVDMSLVDCGITELPESLGRSPSLKFLNL--AENDFEK-----IPSSIKQLSNLLFLTLQNC 323 (583)
Q Consensus 268 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~c 323 (583)
. ....+...+...++|++|+| ++|.+.. +...+...++|+.|++++|
T Consensus 108 ~---------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 108 S---------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp H---------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred H---------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 1 00014556677788999999 7788772 4455666778888888776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=1.5e-05 Score=73.44 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=83.3
Q ss_pred cccCCCcCEEeccCC-CCcc-----ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCCc---
Q 036772 178 LEISCNIENLDLSET-AIEE-----LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEK--- 244 (583)
Q Consensus 178 ~~~~~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~--- 244 (583)
....++|++|+|++| .+.. +...+...++|++|+|++|..... +...+...++|++|++++|.....
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344578999999999 8863 556677889999999999986543 445566678999999999876532
Q ss_pred -cccccCCCCcccEEEc--cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772 245 -LPEEIGNLESLKIMLA--NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE 303 (583)
Q Consensus 245 -lp~~l~~l~~L~~L~l--~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~ 303 (583)
+.+.+...++|+.|++ ++|.+.+. ....+...+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556666677777777 55655431 00013445556789999999999875
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.47 E-value=0.013 Score=59.90 Aligned_cols=247 Identities=10% Similarity=0.123 Sum_probs=121.3
Q ss_pred CCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEe
Q 036772 46 NELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLD 120 (583)
Q Consensus 46 ~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~ 120 (583)
.+|+.+.+.. .+++++.. | .+.+|+.++++.+ ++.+... |.++ +|+.+.+..+ +..+. .|.. .+|+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCSEEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCccccc
Confidence 4677777743 46666654 3 6778888888754 6666544 5555 5777766543 33333 2444 3788888
Q ss_pred eeCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccc---------------cccCC
Q 036772 121 LVGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRF---------------LEISC 182 (583)
Q Consensus 121 L~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~---------------~~~~~ 182 (583)
+... +..+.. .+.+ .+|+...+.. .++.+.... .+..++...+......... .....
T Consensus 120 lp~~--~~~i~~~~F~~-~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 120 FPGA--TTEIGNYIFYN-SSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp CCTT--CCEECTTTTTT-CCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred CCCc--ccccccccccc-ceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 7653 223332 2333 3455555543 233333322 5666666666543221100 00111
Q ss_pred CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCCCcccEEEcc
Q 036772 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNLESLKIMLAN 261 (583)
Q Consensus 183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~ 261 (583)
.+..+.+...........+..+.+|+.+.+... ....-...+..+..|+.+.+..+ +..+ ...+.++.+|+.+.+.
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccc
Confidence 233333322221112223455666777666542 11112334556677777776542 2222 2234455566655543
Q ss_pred CCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccc
Q 036772 262 ETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQ 321 (583)
Q Consensus 262 ~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~ 321 (583)
.+ +..++ ..+..+++|+.+.+.++.++.++. .+..+.+|+.+.|.
T Consensus 272 ~~---------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 272 AK---------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CC---------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cc---------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 22 12222 244555666666666555555542 34455555555553
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.41 E-value=0.033 Score=56.79 Aligned_cols=279 Identities=10% Similarity=0.082 Sum_probs=153.5
Q ss_pred CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCC
Q 036772 14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNL 90 (583)
Q Consensus 14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l 90 (583)
...+|+.+.|.. ....+++ .|... .+|+.+.+.. .++.++.. |.-.+|..+.+.. +++.+... +..
T Consensus 44 ~~~~i~~v~ip~-------~vt~Ig~~aF~~C-~~L~~I~lp~-~v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~- 112 (379)
T 4h09_A 44 DRDRISEVRVNS-------GITSIGEANFNSC-YNMTKVTVAS-TVTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQG- 112 (379)
T ss_dssp GGGGCSEEEECT-------TEEEECTTTTTTC-TTCCEEEECT-TCCEECTTTTTTCCCCEEEECT-TCCEECTTTTTT-
T ss_pred cccCCEEEEeCC-------CccChHHHHhhCC-CCCCEEEeCC-cceEechhhhcCCCCceEECCc-eeeEeccceecc-
Confidence 445677777754 3445554 45555 5899999864 37777655 3333677777764 36666554 443
Q ss_pred CCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhh-hhhccCCCCCCEEEccCCCCCCcCCC-----------
Q 036772 91 AALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPT----------- 156 (583)
Q Consensus 91 ~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~----------- 156 (583)
.+|+.+.+..+ ...+. .|.. .+|+.+.+... +..+ ...+..+.+++...+...........
T Consensus 113 ~~L~~i~lp~~--~~~i~~~~F~~-~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (379)
T 4h09_A 113 TDLDDFEFPGA--TTEIGNYIFYN-SSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL 187 (379)
T ss_dssp CCCSEEECCTT--CCEECTTTTTT-CCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred CCcccccCCCc--ccccccccccc-ceeeeeeccce--eeccccchhcccccccccccccccceeecccceeccccccee
Confidence 47888888764 22222 2333 35666665542 2222 23455667777766654322111100
Q ss_pred -cC-CCCCccEEEecCCCCcc--cccccCCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCccc-cccccCCCC
Q 036772 157 -GI-NLDSLKVLYLGGCSNLK--RFLEISCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKS 230 (583)
Q Consensus 157 -~~-~l~~L~~L~L~~c~~l~--~~~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~ 230 (583)
.+ ....+..+.+....... .......+++.+.+..+ ++.+. ..+..+..|+.+.+..+ +..+ ...+.++..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTT
T ss_pred ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeeh
Confidence 01 22333333332211100 01112235566655433 34443 34667888888888653 3333 345667888
Q ss_pred CcEEEccCCCCCCcccc-ccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-
Q 036772 231 LQYLFLSGCLKLEKLPE-EIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS- 307 (583)
Q Consensus 231 L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~- 307 (583)
|+.+.+... +..++. .+..+.+|+.+.+.++. ++.++ ..+..+.+|+.+.|..+ ++.|+.
T Consensus 265 l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~--------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 327 (379)
T 4h09_A 265 LKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA--------------IETLEPRVFMDCVKLSSVTLPTA-LKTIQVY 327 (379)
T ss_dssp CCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT--------------CCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred hcccccccc--ceeccccccccccccccccccccc--------------cceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence 888888642 333333 45667777766655443 34454 56788999999999653 676654
Q ss_pred hhhccCcccccccccccccccCC
Q 036772 308 SIKQLSNLLFLTLQNCKRLQSLP 330 (583)
Q Consensus 308 ~i~~l~~L~~L~L~~c~~L~~lp 330 (583)
.+..|++|+.+.+.. .++.|.
T Consensus 328 aF~~C~~L~~i~ip~--~v~~I~ 348 (379)
T 4h09_A 328 AFKNCKALSTISYPK--SITLIE 348 (379)
T ss_dssp TTTTCTTCCCCCCCT--TCCEEC
T ss_pred HhhCCCCCCEEEECC--ccCEEc
Confidence 466777777777643 244443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=9.8e-05 Score=71.84 Aligned_cols=93 Identities=20% Similarity=0.174 Sum_probs=46.9
Q ss_pred EEccCCChhhhccc----ccCCCCccEEeccCCCCCC--CCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCC--CCCEE
Q 036772 73 LEMPHSNIEQLWNG----VQNLAALKRLNLSYCKQLS--RIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLN--KLVFL 143 (583)
Q Consensus 73 L~L~~~~l~~l~~~----~~~l~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~--~L~~L 143 (583)
++++.|....++.. ..++++|+.|+|++|++.. .+|+ +..+++|+.|+|++|..... ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 44555544433221 1456666777777665433 2222 34566677777766554332 1222222 67777
Q ss_pred EccCCCCCCcCCCc-------C-CCCCccEEE
Q 036772 144 NLGRCISLKSLPTG-------I-NLDSLKVLY 167 (583)
Q Consensus 144 ~L~~c~~l~~lp~~-------~-~l~~L~~L~ 167 (583)
+|++|..-..+|.. + .+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77665443334421 1 466666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.05 E-value=0.00032 Score=68.17 Aligned_cols=79 Identities=28% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCceEEEccCCChhhhc---ccccCCCCccEEeccCCCCCCCCCCCCCCC--CcCEEeeeCCCCchhhh-------hh
Q 036772 66 IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCASLIEIH-------SS 133 (583)
Q Consensus 66 ~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~--~L~~L~L~~~~~l~~~~-------~~ 133 (583)
.+++|++|+|++|++..+. ..+..+++|+.|+|++|++.. +.++..+. +|++|+|++|.....+| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3567788888888777543 345678888888888886543 33333333 88888888887654332 34
Q ss_pred ccCCCCCCEEEc
Q 036772 134 IQHLNKLVFLNL 145 (583)
Q Consensus 134 i~~l~~L~~L~L 145 (583)
+..+++|+.||=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 678899998874
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.53 E-value=0.017 Score=49.30 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=34.4
Q ss_pred EEEecCCCCC--CCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCC
Q 036772 50 YFQWDGYPLK--SLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCK 102 (583)
Q Consensus 50 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~ 102 (583)
.++.++..++ ++|.. .+++|++|+|++|+|+.++.+ +..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5666666776 77754 344577777777777777654 5666777777777664
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.42 E-value=0.013 Score=53.79 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=52.2
Q ss_pred ccCCCCccEEeeeCCCCCcc-----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccE
Q 036772 201 IGNLSRLVRLDLTNCSRLKS-----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVD 271 (583)
Q Consensus 201 i~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~ 271 (583)
+.+-+.|+.|+|++++.+.. +-..+..-+.|+.|+|++|.... .+-+.+..-+. |+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t--------------L~~ 102 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS--------------LRV 102 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS--------------CCE
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc--------------cCe
Confidence 34456677777766422221 23344445566666666654331 12222223333 444
Q ss_pred EEeccCCCcc-----cCccCCCCCCCCEEEccCCC---Cc-----ccChhhhccCcccccccc
Q 036772 272 MSLVDCGITE-----LPESLGRSPSLKFLNLAEND---FE-----KIPSSIKQLSNLLFLTLQ 321 (583)
Q Consensus 272 L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~---l~-----~lp~~i~~l~~L~~L~L~ 321 (583)
|+|++|.+.+ +-+.+..-+.|++|+|++|. +. .+...+..-+.|+.|+++
T Consensus 103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 4444444443 34455556678888887653 22 122334444555555554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.05 E-value=0.062 Score=45.78 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=28.9
Q ss_pred EEeccCCCc--ccCccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccc
Q 036772 272 MSLVDCGIT--ELPESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNC 323 (583)
Q Consensus 272 L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c 323 (583)
++-++.+++ .+|..+ .++|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus 13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344444444 455432 23567777777777766644 455666666666655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.04 E-value=0.026 Score=51.82 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=74.8
Q ss_pred cCCCcCEEeccCC-CCcc-----ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCC----cc
Q 036772 180 ISCNIENLDLSET-AIEE-----LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KL 245 (583)
Q Consensus 180 ~~~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~l 245 (583)
.-+.|++|+|+++ .|.. +-..+..-+.|+.|+|++|..... +...+..-+.|++|+|++|.... .+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3467999999985 7752 555677788999999999987543 44455567899999999987653 23
Q ss_pred ccccCCCCcccEEEccCCccccCccEEEeccCCCcc-----cCccCCCCCCCCEEEccCCCC
Q 036772 246 PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDF 302 (583)
Q Consensus 246 p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l 302 (583)
-+.+..-+.|+.|+++++... .+.+ +-..+..-+.|+.|+++.+.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~-----------~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQS-----------VLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSC-----------CCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCc-----------CcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344555566777766543210 1111 333445567889999987654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.19 E-value=70 Score=25.11 Aligned_cols=37 Identities=19% Similarity=0.061 Sum_probs=17.1
Q ss_pred ccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeC
Q 036772 87 VQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVG 123 (583)
Q Consensus 87 ~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 123 (583)
|.++.+|+.+.|..+-....-..|..+.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 4555555555555431111111355555555555544
Done!