BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036775
(293 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296083914|emb|CBI24302.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 202/292 (69%), Positives = 241/292 (82%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SWTTM+GG A+ G CEEAV VFQ M K EA PNE TLVNVL+ACSS+SAL+
Sbjct: 235 MFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNL 294
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYISTRYDL V VGNA+INMY KC D+ +A++VFN L +KDMISWST+I G+A
Sbjct: 295 GRWVHSYISTRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMA 354
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G ALQ FSLM+++GV PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQ
Sbjct: 355 MNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQM 414
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC+VDMYGRAGLLEEAEAFIR MP+EAE +WGALLNAC+IH N++MF I Q L N
Sbjct: 415 QHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGRIDQSLRN 474
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
KGVS+GT AL+SNT+A ++RW+DANK+RD +R MGLKK +GCSWIEV+ I
Sbjct: 475 AKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 526
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 115/189 (60%), Gaps = 6/189 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSWT++I G ++ GF EEA+ F M+ +PN +TLV+V+SAC + A+ FG+ +
Sbjct: 141 DVVSWTSIISGLSKCGFDEEAIGEFLSMD----VKPNTSTLVSVVSACCGLRAVRFGKAI 196
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y S R + ++ NA+++ YVKCG + A +F + +D+ISW+T++ GLA G
Sbjct: 197 HGY-SLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGL 255
Query: 125 GRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A+++F M+ G P++VT + +++ACS ++ G + +ST Y++V
Sbjct: 256 CEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISTRYDLVVDGNVG 315
Query: 184 ACVVDMYGR 192
+++MY +
Sbjct: 316 NALINMYAK 324
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
++A+ ++ +M + + N T + L A SS+ AL +H+ S + N
Sbjct: 58 QDALLLYNQMVLHRTSH-NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYS-DIFIQN 115
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
+++ YV + A VF ++ D++SW+++ISGL+ G +A+ F M V P
Sbjct: 116 TLLHSYVVENNFVFAKSVFKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSM---DVKP 172
Query: 143 DDVTFIALISAC 154
+ T ++++SAC
Sbjct: 173 NTSTLVSVVSAC 184
>gi|147788829|emb|CAN73311.1| hypothetical protein VITISV_018159 [Vitis vinifera]
Length = 725
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/292 (68%), Positives = 240/292 (82%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SWTTM+GG A+ G CEEAV VFQ M K EA PNE TLVNVL+ACSS+SAL+
Sbjct: 169 MFRRDVISWTTMVGGLAQGGLCEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNL 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYIS RYDL V VGNA+INMY KC D+ +A++VFN L +KDMISWST+I G+A
Sbjct: 229 GRWVHSYISIRYDLVVDGNVGNALINMYAKCSDMYMAVRVFNELTHKDMISWSTIIGGMA 288
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G ALQ FSLM+++GV PDDVTFI L+SACSH GLV+QGLI FKAM+ VY I PQ
Sbjct: 289 MNGHGMHALQFFSLMLVHGVSPDDVTFIGLLSACSHAGLVEQGLIFFKAMNNVYGIAPQM 348
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC+VDMYGRAGLLEEAEAFIR MP+EAE +WGALLNAC+IH N++MF I Q L N
Sbjct: 349 QHYACMVDMYGRAGLLEEAEAFIRGMPMEAEGPIWGALLNACKIHGNEKMFGXIBQSLRN 408
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
KGVS+GT AL+SNT+A ++RW+DANK+RD +R MGLKK +GCSWIEV+ I
Sbjct: 409 AKGVSIGTLALLSNTYASSNRWDDANKVRDMMRDMGLKKMSGCSWIEVDAMI 460
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 114/189 (60%), Gaps = 6/189 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSWT++I G ++ GF EEA+ F M+ +PN +TLV+V+SAC + A+ FG+ +
Sbjct: 75 DVVSWTSIISGLSKCGFDEEAIGEFLSMD----VKPNTSTLVSVVSACCGLRAVRFGKAI 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y S R + ++ NA+++ YVKCG + A +F + +D+ISW+T++ GLA G
Sbjct: 131 HGY-SLRSMDGDNIILDNALLDFYVKCGYLVSAKYLFMKMFRRDVISWTTMVGGLAQGGL 189
Query: 125 GRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A+++F M+ G P++VT + +++ACS ++ G + +S Y++V
Sbjct: 190 CEEAVEVFQAMVKGGEAVPNEVTLVNVLTACSSLSALNLGRWVHSYISIRYDLVVDGNVG 249
Query: 184 ACVVDMYGR 192
+++MY +
Sbjct: 250 NALINMYAK 258
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMY 190
V PD TFI L SA SH LV+QG + A + I+P+ QHYACVVD+Y
Sbjct: 478 VLPDIATFIGLFSASSHKELVEQGFVFLGATNDD-GIMPKIQHYACVVDIY 527
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T + L A SS+ AL +H+ S + N +++ YV + A V
Sbjct: 9 NHFTFTHALIASSSLHALHKTLEIHARAIKSGHYS-DIFIQNTLLHSYVVENNXVFAKSV 67
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
F ++ D++SW+++ISGL+ G +A+ F M + P+ T ++++SAC
Sbjct: 68 FKSISSPDVVSWTSIISGLSKCGFDEEAIGEFLSMDVK---PNTSTLVSVVSAC 118
>gi|449442521|ref|XP_004139030.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 1 [Cucumis sativus]
gi|449442523|ref|XP_004139031.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like isoform 2 [Cucumis sativus]
Length = 517
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 188/293 (64%), Positives = 241/293 (82%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSWTTMIGGYA+ G CEEAV VFQ M EA PNEATLVNVLSACSSISAL
Sbjct: 222 MPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHL 281
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ+VHSYI++R+D+ + VGNA+INMYVKCG++ +AI +F + +KD++SWST+ISGLA
Sbjct: 282 GQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKAIEHKDIVSWSTIISGLA 341
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G+QA LFSLM+++GV PDD+TF+ L+SACSHGGL++QG+++F+AM VY I PQ
Sbjct: 342 MNGLGKQAFVLFSLMLVHGVSPDDITFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQM 401
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDMYG+AGLL+EAEAFI+EMP+EAE VWGALL+AC++H N++ ++ +R+ L+
Sbjct: 402 RHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLG 461
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
KGV+VGTFAL+SNT+A DRW DAN +R +R GLKK G SWIE+ S +
Sbjct: 462 SKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEMVDSTY 514
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 113/200 (56%), Gaps = 6/200 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DVVSWT++I G ++ GF +EA+S F M PN TLV LSACSS+ L
Sbjct: 124 IPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN----VRPNSTTLVTALSACSSLRCLKL 179
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R + ++ NA+++ YV+C + A +F + +D++SW+T+I G A
Sbjct: 180 GKAIHG-LRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 238
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A+++F M+ G P++ T + ++SACS + G + +++ ++++
Sbjct: 239 QSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIID 298
Query: 180 TQHYACVVDMYGRAGLLEEA 199
+++MY + G +E A
Sbjct: 299 GNVGNALINMYVKCGNMEMA 318
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 20/212 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK + + ++G F E + ++ +M + + N T L AC + G
Sbjct: 26 PKPHI--FNPLLGSLVNSIFPENGLFLYNQMLRYPSSH-NHFTFTYALKACCFLHQTQKG 82
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H+++ LS + N++++ Y+ GDV A +F+ + D++SW+++ISGL+
Sbjct: 83 LEIHAHLIKSGHLS-DIFIQNSLLHFYILDGDVSSASLIFDSIPDPDVVSWTSIISGLSK 141
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G ++AL F M V P+ T + +SACS L K ++ + +T
Sbjct: 142 LGFEKEALSKFLSM---NVRPNSTTLVTALSACS-------SLRCLKLGKAIHGLRMRTL 191
Query: 182 HYACVV------DMYGRAGLLEEAEAFIREMP 207
+ V+ D Y R L AE +MP
Sbjct: 192 NEENVILENALLDFYVRCAYLRSAENLFEKMP 223
>gi|449476231|ref|XP_004154679.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like, partial [Cucumis sativus]
Length = 472
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/288 (64%), Positives = 238/288 (82%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSWTTMIGGYA+ G CEEAV VFQ M EA PNEATLVNVLSACSSISAL
Sbjct: 177 MPKRDVVSWTTMIGGYAQSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHL 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ+VHSYI++R+D+ + VGNA+INMYVKCG++ +AI +F +KD++SWST+ISGLA
Sbjct: 237 GQWVHSYINSRHDVIIDGNVGNALINMYVKCGNMEMAILIFKATEHKDIVSWSTIISGLA 296
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G+QA LFSLM+++G+ PDDVTF+ L+SACSHGGL++QG+++F+AM VY I PQ
Sbjct: 297 MNGLGKQAFVLFSLMLVHGISPDDVTFLGLLSACSHGGLINQGMMVFEAMKDVYNISPQM 356
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDMYG+AGLL+EAEAFI+EMP+EAE VWGALL+AC++H N++ ++ +R+ L+
Sbjct: 357 RHYACMVDMYGKAGLLDEAEAFIKEMPMEAEGPVWGALLHACQLHGNEKKYEKVREWLLG 416
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
KGV+VGTFAL+SNT+A DRW DAN +R +R GLKK G SWIE+
Sbjct: 417 SKGVTVGTFALLSNTYACCDRWNDANDVRVAMRSRGLKKMAGRSWIEM 464
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 112/200 (56%), Gaps = 6/200 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DVVSWT++I G ++ GF +EA+S F M PN TLV LS CSS+ L
Sbjct: 79 IPDPDVVSWTSIISGLSKLGFEKEALSKFLSMN----VRPNSTTLVTALSTCSSLRCLKL 134
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R + ++ NA+++ YV+C + A +F + +D++SW+T+I G A
Sbjct: 135 GKAIHG-LRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMPKRDVVSWTTMIGGYA 193
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A+++F M+ G P++ T + ++SACS + G + +++ ++++
Sbjct: 194 QSGLCEEAVRVFQNMVHVGEAIPNEATLVNVLSACSSISALHLGQWVHSYINSRHDVIID 253
Query: 180 TQHYACVVDMYGRAGLLEEA 199
+++MY + G +E A
Sbjct: 254 GNVGNALINMYVKCGNMEMA 273
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 17/173 (9%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T L AC + G +H+++ LS + N++++ Y+ GDV A +
Sbjct: 17 NHFTFTYALKACCFLHQTQKGLEIHAHLIKSGHLS-DIFIQNSLLHFYILDGDVSSASLI 75
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + D++SW+++ISGL+ G ++AL F M V P+ T + +S CS
Sbjct: 76 FDSIPDPDVVSWTSIISGLSKLGFEKEALSKFLSM---NVRPNSTTLVTALSTCS----- 127
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEAEAFIREMP 207
L K ++ + +T + V+ D Y R L AE +MP
Sbjct: 128 --SLRCLKLGKAIHGLRMRTLNEENVILENALLDFYVRCAYLRSAENLFEKMP 178
>gi|356555244|ref|XP_003545944.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 521
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 171/285 (60%), Positives = 219/285 (76%), Gaps = 1/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSWTT++ GYA G+CEEA +VF+ M EAEPNEAT+V VLSA +SI ALS GQ+
Sbjct: 224 RDVVSWTTLLMGYARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQW 283
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHSYI +RYDL V + NA++NMYVKCGD+ + ++VF+M+ +KD ISW TVI GLAMNG
Sbjct: 284 VHSYIDSRYDLVVDGNIENALLNMYVKCGDMQMGLRVFDMIVHKDAISWGTVICGLAMNG 343
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++ L+LFS M++ V PDDVTFI ++SACSH GLV++G++ FKAM Y IVPQ +HY
Sbjct: 344 YEKKTLELFSRMLVEVVEPDDVTFIGVLSACSHAGLVNEGVMFFKAMRDFYGIVPQMRHY 403
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VDMYGRAGLLEEAEAF+R MP+EAE +WGALL AC+IH N++M + I L K
Sbjct: 404 GCMVDMYGRAGLLEEAEAFLRSMPVEAEGPIWGALLQACKIHGNEKMSEWIMGHL-KGKS 462
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
V VGT AL+SN +A ++RW+DANK+R +R LKK GCSW+E+
Sbjct: 463 VGVGTLALLSNMYASSERWDDANKVRKSMRGTRLKKVAGCSWVEL 507
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 130/253 (51%), Gaps = 11/253 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
+P DVVSWT+++ G A+ GF +A+ F M K K PN ATLV L ACSS+ AL
Sbjct: 117 IPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACSSLGALG 176
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ H+Y + + NAV+ +Y KCG + A +F+ + +D++SW+T++ G
Sbjct: 177 LGKSAHAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWTTLLMGY 236
Query: 120 AMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G +A +F M++N P++ T + ++SA + G + G + + + Y++V
Sbjct: 237 ARGGYCEEAFAVFKRMVLNAEAEPNEATVVTVLSASASIGALSLGQWVHSYIDSRYDLVV 296
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND------EMFD 232
+++MY + G ++ + +M + + WG ++ C + N E+F
Sbjct: 297 DGNIENALLNMYVKCGDMQMGLR-VFDMIVHKDAISWGTVI--CGLAMNGYEKKTLELFS 353
Query: 233 PIRQELVNKKGVS 245
+ E+V V+
Sbjct: 354 RMLVEVVEPDDVT 366
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 40/207 (19%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYI--STRY-DLSVSNLVGNAVINMYVKCGDVGIA 97
N T + L AC S + S +H+++ S Y DL + N++++ Y+ DV A
Sbjct: 55 NHYTFTHALRACYSHHSRSKALEIHAHLVKSGHYLDL----FLQNSLLHFYLAHNDVVSA 110
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISACS 155
+F + D++SW++++SGLA +G QAL F+ M V P+ T +A + ACS
Sbjct: 111 SNLFRSIPSPDVVSWTSLVSGLAKSGFEAQALHHFTNMNAKPKIVRPNAATLVAALCACS 170
Query: 156 HGG----------------LVDQGLILFKAMSTVYEIVPQTQHYACVVDM---------- 189
G + D +I A+ +Y ++ + D
Sbjct: 171 SLGALGLGKSAHAYGLRMLIFDGNVIFDNAVLELYAKCGALKNAQNLFDKVFARDVVSWT 230
Query: 190 -----YGRAGLLEEAEAFIREMPIEAE 211
Y R G EEA A + M + AE
Sbjct: 231 TLLMGYARGGYCEEAFAVFKRMVLNAE 257
>gi|357446587|ref|XP_003593569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482617|gb|AES63820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 528
Score = 356 bits (914), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/287 (57%), Positives = 216/287 (75%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRDV+SWTT++ YA G C EAV VF++M + EAEPNE+T+V VLSAC+SI +LS
Sbjct: 218 MSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSL 277
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI R DL V +GNA++NMYVKCGD+ + ++VFNM+ +KD+ISW TVI GLA
Sbjct: 278 GCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G+Q +Q+FS M+++GV PDDVTFI L+SACSH GLV +G++ FKAM Y IVPQ
Sbjct: 338 MNGYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQM 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VDMYGRA L EEA AF++ MP+EAE +W ALL AC+ H N+EM + IR + ++
Sbjct: 398 SHYGCMVDMYGRASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IH 456
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
K V VGT AL+SN +A ++RW+DAN +R +R GLKK G SW+E
Sbjct: 457 DKNVGVGTLALLSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 6/220 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DVVSWT++I G ++ GF EA+ F + +PN TLV+ +SACSSI A+ F
Sbjct: 119 IPSPDVVSWTSLISGLSKCGFETEAIEAFSSIN----VKPNALTLVSAISACSSIGAIKF 174
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y + + + NA +++Y KCG A VF ++ +D+ISW+T++ A
Sbjct: 175 GKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYA 234
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A+++F MI++G P++ T + ++SAC+ G + G + + ++
Sbjct: 235 RGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRIDLDVD 294
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+V+MY + G ++ + M + + WG ++
Sbjct: 295 GNIGNALVNMYVKCGDMKMGLK-VFNMVVHKDVISWGTVI 333
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T + L AC S A + G +H+ + + + N ++ Y+ DV A +V
Sbjct: 57 NHYTFTHALKACCSYHAHAKGLEIHARLIKSGHI-FDGFIKNTLLYFYLSSNDVVSATRV 115
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + D++SW+++ISGL+ G +A++ FS + V P+ +T ++ ISACS G +
Sbjct: 116 FKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSI---NVKPNALTLVSAISACSSIGAI 172
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
G + I Y +D+Y + G A +M S W LL
Sbjct: 173 KFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVIS-WTTLLM 231
Query: 221 A 221
A
Sbjct: 232 A 232
>gi|217074958|gb|ACJ85839.1| unknown [Medicago truncatula]
gi|388521431|gb|AFK48777.1| unknown [Medicago truncatula]
Length = 515
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 165/287 (57%), Positives = 215/287 (74%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRDV+SWTT++ YA G C EAV VF++M + EAEPNE+T+V VLSAC+SI +LS
Sbjct: 218 MSKRDVISWTTLLMAYARGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSL 277
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI R DL V +GNA++NMYVKCGD+ + ++VFNM+ +KD+ISW TVI GLA
Sbjct: 278 GCWVHDYIEKRIDLDVDGNIGNALVNMYVKCGDMKMGLKVFNMVVHKDVISWGTVICGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MN G+Q +Q+FS M+++GV PDDVTFI L+SACSH GLV +G++ FKAM Y IVPQ
Sbjct: 338 MNEYGKQVVQMFSHMLVHGVLPDDVTFIGLLSACSHVGLVSEGMMFFKAMRDSYGIVPQM 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VDMYGRA L EEA AF++ MP+EAE +W ALL AC+ H N+EM + IR + ++
Sbjct: 398 SHYGCMVDMYGRASLFEEAVAFLKGMPVEAEGPIWSALLQACKTHGNEEMSEWIRGQ-IH 456
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
K V VGT AL+SN +A ++RW+DAN +R +R GLKK G SW+E
Sbjct: 457 DKNVGVGTLALLSNIYASSERWDDANNVRKIMRGTGLKKVAGLSWVE 503
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 6/220 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DVVSWT++I G ++ GF EA+ F + +PN TLV+ +SACSSI A+ F
Sbjct: 119 IPSPDVVSWTSLISGLSKCGFETEAIEAFSSIN----VKPNALTLVSAISACSSIGAIKF 174
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y + + + NA +++Y KCG A VF ++ +D+ISW+T++ A
Sbjct: 175 GKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVISWTTLLMAYA 234
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A+++F MI++G P++ T + ++SAC+ G + G + + ++
Sbjct: 235 RGGQCGEAVEVFKQMIVSGEAEPNESTVVTVLSACASIGSLSLGCWVHDYIEKRIDLDVD 294
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+V+MY + G ++ + M + + WG ++
Sbjct: 295 GNIGNALVNMYVKCGDMKMGLK-VFNMVVHKDVISWGTVI 333
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T + L AC S A + G +H+ + + + N ++ Y+ DV A +V
Sbjct: 57 NHYTFTHALKACCSYHAHAKGLEIHARLIKSGHI-FDGFIKNTLLYFYLSSNDVVSATRV 115
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + D++SW+++ISGL+ G +A++ FS + V P+ +T ++ ISACS G +
Sbjct: 116 FKSIPSPDVVSWTSLISGLSKCGFETEAIEAFSSI---NVKPNALTLVSAISACSSIGAI 172
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
G + I Y +D+Y + G A +M S W LL
Sbjct: 173 KFGKAIHAYGLKSLMIDGNIVFYNAALDLYAKCGFFSNARNVFVKMSKRDVIS-WTTLLM 231
Query: 221 A 221
A
Sbjct: 232 A 232
>gi|356546651|ref|XP_003541737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 293
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 160/272 (58%), Positives = 209/272 (76%), Gaps = 1/272 (0%)
Query: 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL 79
G+CEEA +VF+ M ++EAEPNEAT+V VLSAC+SI LS GQ+VHSYI +R+DL V
Sbjct: 12 GYCEEAFAVFKRMVLSEEAEPNEATIVTVLSACASIGTLSLGQWVHSYIDSRHDLVVDEN 71
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+GNA++NMYVKCGD+ + +VF+M+ +KD+ISW T I GLAMNG R L+LFS M++ G
Sbjct: 72 IGNALLNMYVKCGDMQMGFRVFDMIVHKDVISWGTFICGLAMNGYERNTLELFSRMLVEG 131
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
V PD+VTFI ++SACSH GL+++G++ FKAM Y IVPQ +HY C+VDMYGRAGL EEA
Sbjct: 132 VEPDNVTFIGVLSACSHAGLLNEGVMFFKAMRDFYGIVPQMRHYGCMVDMYGRAGLFEEA 191
Query: 200 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259
EA +R MP+EAE +WGALL AC+IHRN++M + IR L K V VGT AL+SN +A +
Sbjct: 192 EALLRRMPVEAEGPIWGALLQACKIHRNEKMSEWIRGHL-KGKSVGVGTLALLSNMYASS 250
Query: 260 DRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+RW+DA K+R +R GLKK GCSW+E+ S
Sbjct: 251 ERWDDAKKVRKSMRGTGLKKVAGCSWVELEMS 282
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T I G A G+ + +F M + EP+ T + VLSACS L+ G
Sbjct: 99 KDVISWGTFICGLAMNGYERNTLELFSRM-LVEGVEPDNVTFIGVLSACSHAGLLNEGVM 157
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCG 92
+ Y + +++MY + G
Sbjct: 158 FFKAMRDFYGIVPQMRHYGCMVDMYGRAG 186
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 129/290 (44%), Positives = 198/290 (68%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+ MI GY++ C EA+ +F EM+K +PNE T+V++LS+C+ + AL
Sbjct: 286 MDRRDVVAWSAMISGYSQASRCREALDLFHEMQKAN-IDPNEITMVSILSSCAVLGALET 344
Query: 61 GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++VH +I R L+V+ +G A+++ Y KCG V +I+VF + K+++SW+ +I GL
Sbjct: 345 GKWVHFFIKKKRMKLTVT--LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGL 402
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G++AL+ F LM+ V P+DVTFI ++SACSH GLVD+G LF +MS + I P+
Sbjct: 403 ASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPR 462
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGL+EEA FI+ MPI+ +W LL +C++H+N E+ + ++L+
Sbjct: 463 IEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLI 522
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A RWEDA K+R E++ G+KK GCS IE++
Sbjct: 523 ILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELD 572
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 122/226 (53%), Gaps = 14/226 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V +W +M GY + G EE V +F EM + + +E TLV+VL+AC ++ L
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLEL-DIRFDEVTLVSVLTACGRLADLEL 243
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++++ Y+ + L + + ++++MY KCG V A ++F+ + +D+++WS +ISG +
Sbjct: 244 GEWINRYVEEK-GLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
R+AL LF M + P+++T ++++S+C+ G ++ G I K M
Sbjct: 303 QASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVT 362
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++D Y + G +E + +MP++ S W L+
Sbjct: 363 L------GTALMDFYAKCGSVESSIEVFGKMPVKNVLS-WTVLIQG 401
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 115/220 (52%), Gaps = 10/220 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D ++ MI G+ + EA+ +F+EM + +P+E T +L CS + ALS G+ +
Sbjct: 88 DSPAYNIMIRGFTLKQSPHEAILLFKEMHENS-VQPDEFTFPCILKVCSRLQALSEGEQI 146
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I + V N +I+MY CG+V +A +VF+ ++ +++ +W+++ +G +G
Sbjct: 147 HALI-MKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGN 205
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQTQ 181
+ ++LF M+ + D+VT +++++AC G L D L L + ++ E +
Sbjct: 206 WEEVVKLFHEMLELDIRFDEVTLVSVLTAC--GRLAD--LELGEWINRYVEEKGLKGNPT 261
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + G ++ A +M + W A+++
Sbjct: 262 LITSLVDMYAKCGQVDTARRLFDQMD-RRDVVAWSAMISG 300
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLS---VSNLV 80
++S+F E KT +L C +I L+ +H++ I TR L NL+
Sbjct: 18 SISLFPENPKTL-----------ILEQCKTIRDLN---EIHAHLIKTRLLLKPKVAENLL 63
Query: 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140
+A I + + A+ +F + D +++ +I G + +A+ LF M N V
Sbjct: 64 ESAAILLPT---SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSV 120
Query: 141 FPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
PD+ TF ++ CS + +G ++ K + V T ++ MY G +
Sbjct: 121 QPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNT-----LIHMYANCGEV 175
Query: 197 EEAEAFIREMPIEAEWSVWGALL 219
E A EM E W ++
Sbjct: 176 EVARRVFDEMS-ERNVRTWNSMF 197
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 193/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV W MIGGY +EA+++F EM+ P+E T+V+ LSACS + AL
Sbjct: 300 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 358
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI +++LS++ +G A+I+MY KCG + AIQVF L ++ ++W+ +ISGLA
Sbjct: 359 GIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 417
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ FS MI N V PD+VTF+ L+SAC HGGLV++G F MS+ + + P+
Sbjct: 418 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 477
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAGLLEEAE I+ MPIEA+ VWGAL ACRIH N M + +L+
Sbjct: 478 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 537
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L++N + A+ W++A K R +R+ G++K GCS IEVN ++
Sbjct: 538 MDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVY 590
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/255 (29%), Positives = 135/255 (52%), Gaps = 35/255 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW +MI GY RG+ EA++ ++EM K + +P+E T++ V+S+C+ + L G+
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREM-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 229
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H YI L ++ + NA+++MY+KCG++ A ++F+ + K M+SW+T++ G A +G
Sbjct: 230 SHCYIEEN-GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSG 288
Query: 124 C-------------------------------GRQALQLFSLMIINGVFPDDVTFIALIS 152
G++AL LF+ M + PD+VT ++ +S
Sbjct: 289 LLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLS 348
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G +D G+ + + +E+ ++DMY + G + +A +E+P
Sbjct: 349 ACSQLGALDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSL 407
Query: 213 SVWGALLNACRIHRN 227
+ W A+++ +H N
Sbjct: 408 T-WTAIISGLALHGN 421
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ SW I G+ + EAV +++ + + +P+ T + AC+ +S + G +
Sbjct: 70 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
++ +D + V NAVI++ V CGD+ A ++F+ +D++SW+++I+G G
Sbjct: 130 LGHVLHLGFDSDI--FVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 187
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISAC-----------SHGGLVDQGLILFKAMST 172
+AL + M + G+ PD+VT I ++S+C SH + + GL L ++
Sbjct: 188 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 247
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G LE A M
Sbjct: 248 A------------LMDMYMKCGNLESARKLFDSM 269
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 132/293 (45%), Positives = 193/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV W MIGGY +EA+++F EM+ P+E T+V+ LSACS + AL
Sbjct: 257 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI +++LS++ +G A+I+MY KCG + AIQVF L ++ ++W+ +ISGLA
Sbjct: 316 GIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 374
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ FS MI N V PD+VTF+ L+SAC HGGLV++G F MS+ + + P+
Sbjct: 375 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 434
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAGLLEEAE I+ MPIEA+ VWGAL ACRIH N M + +L+
Sbjct: 435 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 494
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L++N + A+ W++A K R +R+ G++K GCS IEVN ++
Sbjct: 495 MDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVY 547
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 132/240 (55%), Gaps = 20/240 (8%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW +MI GY RG+ EA++ ++EM K + +P+E T++ V+S+C+ + L G+
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREM-KVEGIKPDEVTMIGVVSSCAQLEDLDLGRE 201
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV-------- 115
H YI L ++ + NA+++MY+KCG++ A ++F+ + K M+SW+T+
Sbjct: 202 SHCYIEEN-GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDK 260
Query: 116 --------ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
I G G++AL LF+ M + PD+VT ++ +SACS G +D G+ +
Sbjct: 261 DVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH 320
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
+ +E+ ++DMY + G + +A +E+P + W A+++ +H N
Sbjct: 321 HYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGN 378
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ SW I G+ + EAV +++ + + +P+ T + AC+ +S + G +
Sbjct: 42 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
++ +D + V NAVI++ V CGD+ A ++F+ +D++SW+++I+G G
Sbjct: 102 LGHVLHLGFDSDI--FVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISAC-----------SHGGLVDQGLILFKAMST 172
+AL + M + G+ PD+VT I ++S+C SH + + GL L ++
Sbjct: 160 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 219
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G LE A M
Sbjct: 220 A------------LMDMYMKCGNLESARKLFDSM 241
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/293 (43%), Positives = 195/293 (66%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W+ MI GY + C EA+++F EM+ T E PN+ T+V+VLSAC+ + AL
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGT-EVNPNDVTMVSVLSACAVLGALET 391
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI R DL ++ ++G A+++ Y KCG + A++ F + ++ +W+ +I G+A
Sbjct: 392 GKWVHSYIR-RKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMA 450
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG R+AL+LFS M+ + P DVTFI ++ ACSHG LV++G F +M+ Y I P+
Sbjct: 451 SNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRI 510
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL++EA FIR MPIE VW ALL+AC +H+N E+ + +++V
Sbjct: 511 EHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVP 570
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SNT+A +W++A +R E++ G++K GCS IE+ +IF
Sbjct: 571 LDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIF 623
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 122/218 (55%), Gaps = 6/218 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ V++W MI GY + G +E V +F+ M + + A +E TL++V +AC + + GQ+
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR-APFDEVTLLSVATACGRLGDANLGQW 293
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y + L NL A+++MY KCG++ A ++F+ + +D+++WS +ISG +
Sbjct: 294 IAEYAEEKGMLRSRNL-ATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSD 352
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
R+AL +F+ M V P+DVT ++++SAC+ G ++ G + + + +P T
Sbjct: 353 RCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRR--KDLPLTVIL 410
Query: 184 -ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+VD Y + G +++A MP+ W+ W AL+
Sbjct: 411 GTALVDFYAKCGCIKDAVKAFESMPVRNTWT-WTALIK 447
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 4/206 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P R S+ +I + G E+A+ +F EM P++ T+ N + +CS + LS G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ V +Y R V V N++I+MY CGDV A +F+ + K +I+W+ +I+G
Sbjct: 191 RGVQAYAFKR-GFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVK 249
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG ++ +++F M+ D+VT +++ +AC G L D L + A + + +++
Sbjct: 250 NGDWKEVVEMFKGMLEVRAPFDEVTLLSVATAC--GRLGDANLGQWIAEYAEEKGMLRSR 307
Query: 182 HYA-CVVDMYGRAGLLEEAEAFIREM 206
+ A +VDMY + G L++A M
Sbjct: 308 NLATALVDMYAKCGELDKARRLFDRM 333
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 186/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++ SW +IGGYA G E + F+ M + PN+ATLV VLSAC+ + AL
Sbjct: 353 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 412
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + L + VGNA+++MY KCG + AI VF + KD+ISW+T+I GLA
Sbjct: 413 GKWVHVYAESS-GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 471
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+ G AL LF M G PD +TFI ++ AC+H GLV+ G F++M+ Y I+PQ
Sbjct: 472 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQI 531
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM RAG LE+A AF+R+MP+EA+ +W LL ACRI++N E+ + Q L+
Sbjct: 532 EHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE 591
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + ++SN + A RWED +++ +R G KK GCS IEVN ++
Sbjct: 592 LEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 643
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ W +M GYA+ E V +F +M K + PN T VL +C I+AL
Sbjct: 159 IPDPNIALWNSMFRGYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIE 217
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ + + VG +I+MY G VG A ++F + +++++W+++I+G
Sbjct: 218 GEQVHCFL-IKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYI 276
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ A +LF L D V + ++S GG + + LF M
Sbjct: 277 LSADLVSARRLFDLAPER----DVVLWNIMVSGYIEGGDMVEARKLFXEMPNR-----DV 327
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ V+ Y G +E E EMP +S W AL+
Sbjct: 328 MFWNTVLKGYATNGNVEALEGLFEEMPERNIFS-WNALI 365
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 48/227 (21%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVV W M+ GY E G EA +F EM PN +
Sbjct: 292 PERDVVLWNIMVSGYIEGGDMVEARKLFXEM-------PNRDVMF--------------- 329
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V+ Y G+V +F + +++ SW+ +I G A
Sbjct: 330 -------------------WNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAH 370
Query: 122 NGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVP 178
NG + L F M+ + V P+D T + ++SAC+ G +D G + ++ S + V
Sbjct: 371 NGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVY 430
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G++E A + R M + S W L+ +H
Sbjct: 431 VGN---ALMDMYAKCGIIENAISVFRGMDTKDLIS-WNTLIGGLAMH 473
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 186/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++ SW +IGGYA G E + F+ M + PN+ATLV VLSAC+ + AL
Sbjct: 290 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 349
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + L + VGNA+++MY KCG + AI VF + KD+ISW+T+I GLA
Sbjct: 350 GKWVHVYAESS-GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 408
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+ G AL LF M G PD +TFI ++ AC+H GLV+ G F++M+ Y I+PQ
Sbjct: 409 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQI 468
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM RAG LE+A AF+R+MP+EA+ +W LL ACRI++N E+ + Q L+
Sbjct: 469 EHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE 528
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + ++SN + A RWED +++ +R G KK GCS IEVN ++
Sbjct: 529 LEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 580
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 12/219 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ W +M GYA+ E V +F +M K + PN T VL +C I+AL
Sbjct: 96 IPDPNIALWNSMFRGYAQSESYREVVFLFFQM-KGMDIRPNCFTFPVVLKSCGKINALIE 154
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ + + VG +I+MY G VG A ++F + +++++W+++I+G
Sbjct: 155 GEQVHCFL-IKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYI 213
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ A +LF L D V + ++S GG + + LF M
Sbjct: 214 LSADLVSARRLFDLAPER----DVVLWNIMVSGYIEGGDMVEARKLFHEMPN-----RDV 264
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ V+ Y G +E E EMP +S W AL+
Sbjct: 265 MFWNTVLKGYATNGNVEALEGLFEEMPERNIFS-WNALI 302
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 26/194 (13%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS--Y 67
TT+I Y+ G +A +F EM + NV++ S I+ Y+ S
Sbjct: 175 TTLIDMYSAGGTVGDAYKIFCEMFER-----------NVVAWTSMING-----YILSADL 218
Query: 68 ISTR--YDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+S R +DL+ ++ N +++ Y++ GD+ A ++F+ + +D++ W+TV+ G A NG
Sbjct: 219 VSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNG 278
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
LF M +F ++ ALI +H GL + L FK M + ++ P
Sbjct: 279 NVEALEGLFEEMPERNIF----SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATL 334
Query: 184 ACVVDMYGRAGLLE 197
V+ R G L+
Sbjct: 335 VTVLSACARLGALD 348
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 132/290 (45%), Positives = 187/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +IGGY G E +S F+ M PN+ATLVNVLSAC+ + AL
Sbjct: 205 MPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDL 264
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++VH Y + Y +V V NA+++MY KCG V A+ VF + KD+ISW+T+I GL
Sbjct: 265 GKWVHVYAESHGYKGNV--YVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGL 322
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G G AL LFS M I G PD +TFI ++ AC+H GLV+ G FK+M+ Y IVP+
Sbjct: 323 AVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPR 382
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL A FIR+MPIEA+ +W ALL ACR+++N E+ + ++L+
Sbjct: 383 IEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAELALEKLI 442
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + ++SN + RW+D +++ +R G KK GCS IEVN
Sbjct: 443 EFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVN 492
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 46/226 (20%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+V W TMI GY E A +F +M PN+ +V+S
Sbjct: 144 PERDIVLWNTMISGYIEAKDVIRARELFDKM-------PNK----DVMS----------- 181
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V+N Y GDV ++F + +++ SW+ +I G
Sbjct: 182 -------------------WNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTR 222
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
NGC + L F M+++G V P+D T + ++SAC+ G +D G + A S Y+
Sbjct: 223 NGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVY 282
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ ++DMY + G++E A + M + W ++ +H
Sbjct: 283 VRN--ALMDMYAKCGVVETALDVFKSMD-NKDLISWNTIIGGLAVH 325
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 112/264 (42%), Gaps = 19/264 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + W M GY++ ++ + +F++M K + PN T +L +C I+AL
Sbjct: 11 IPEPNASIWNAMFRGYSQNESHKDVIVLFRQM-KGLDVMPNCFTFPVILKSCVKINALKE 69
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ + + V +I+MY G + A +VF + +++I+W+ +I+G
Sbjct: 70 GEEVHCFV-IKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYI 128
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
A +LF L D V + +IS V + LF M
Sbjct: 129 TCCDLVTARRLFDL----APERDIVLWNTMISGYIEAKDVIRARELFDKMPN-----KDV 179
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN---DEMFDPIRQE 237
+ V++ Y G + E EMP +S W AL+ RN E+ ++
Sbjct: 180 MSWNTVLNGYASNGDVMACERLFEEMPERNVFS-WNALIGG--YTRNGCFSEVLSAFKRM 236
Query: 238 LVNKKGVSVGTFALMSNTFAGADR 261
LV+ G V A + N + R
Sbjct: 237 LVD--GTVVPNDATLVNVLSACAR 258
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 266 bits (680), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 186/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++ SW +IGGYA G E + F+ M + PN+ATLV VLSAC+ + AL
Sbjct: 132 MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDL 191
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + L + VGNA+++MY KCG + AI VF + KD+ISW+T+I GLA
Sbjct: 192 GKWVHVYAESS-GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 250
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+ G AL LF M G PD +TFI ++ AC+H GLV+ G F++M+ Y I+PQ
Sbjct: 251 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQI 310
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM RAG LE+A AF+R+MP+EA+ +W LL ACRI++N E+ + Q L+
Sbjct: 311 EHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE 370
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + ++SN + A RWED +++ +R G KK GCS IEVN ++
Sbjct: 371 LEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 422
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 94/203 (46%), Gaps = 29/203 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ W +M GYA+ E +F EM + NV++ S I+
Sbjct: 11 IPDPNIALWNSMFRGYAQ---SESYREIFCEMFER-----------NVVAWTSMING--- 53
Query: 61 GQYVHS--YISTR--YDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
Y+ S +S R +DL+ ++ N +++ Y++ GD+ A ++F+ + +D++ W+T
Sbjct: 54 --YILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNT 111
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
V+ G A NG LF M +F ++ ALI +H GL + L FK M +
Sbjct: 112 VLKGYATNGNVEALEGLFEEMPERNIF----SWNALIGGYAHNGLFFEVLGSFKRMLSES 167
Query: 175 EIVPQTQHYACVVDMYGRAGLLE 197
++ P V+ R G L+
Sbjct: 168 DVPPNDATLVTVLSACARLGALD 190
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 195/292 (66%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY + +E +S+F+EM+ +P+E T+V++L+AC+ + AL
Sbjct: 312 MPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAAN-IKPDEFTMVSILTACAHLGALEL 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + ++ + + VGNA+I+MY CG+V AI++FN + ++D ISW+ VI GLA
Sbjct: 371 GEWIKAYID-KNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLA 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +AL +FS M+ + PD+VT I ++ AC+H G+VD+G F M+T + I P
Sbjct: 430 INGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNV 489
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG L+EA I+ MP++ VWG+LL ACR+HR++EM + Q+++
Sbjct: 490 AHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILE 549
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+ N +A +RWE +++R + G+KK GCS IE+N S+
Sbjct: 550 LEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSV 601
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 125/250 (50%), Gaps = 39/250 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W MI GY +E++ +F EME+ + P+ TLV+VLSACS + L+ G+
Sbjct: 182 KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR-VLPSSITLVSVLSACSKLKDLNVGK 240
Query: 63 YVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-- 118
VH Y+ DL + ++ NA+I+MY CGD+ A+ +F+ + +D+ISW+ +++G
Sbjct: 241 RVHRYVK---DLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFT 297
Query: 119 -LAMNGCGR----------------------------QALQLFSLMIINGVFPDDVTFIA 149
L G R + L LF M + PD+ T ++
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+++AC+H G ++ G + KA EI + ++DMY G +E+A MP
Sbjct: 358 ILTACAHLGALELGEWI-KAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR 416
Query: 210 AEWSVWGALL 219
+ S W A++
Sbjct: 417 DKIS-WTAVI 425
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + W MI GY+ G AVS++ EM + + P+E T +L + +A+
Sbjct: 79 MPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLE-RGVMPDEYTYPFLLKRFTRDTAVKC 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I + S + V NA+I++Y G+V +A VF+ + D+++W+ +ISG
Sbjct: 138 GRELHDHI-VKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYN 196
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ ++++LF M V P +T ++++SACS ++ G + + + + +I P
Sbjct: 197 RSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDL-KIEPVR 255
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY G ++ A M
Sbjct: 256 VLENALIDMYAACGDMDTALGIFDNM 281
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
GD+ A VF+ + + W+ +I G + GC A+ ++ M+ GV PD+ T+ L+
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 196/291 (67%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + ++AV++F+EM+ + +P++ T+V +L+ C+ + AL G
Sbjct: 437 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQ-IQRVKPDKFTVVTLLTGCAQLGALEQG 495
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H Y+ +++ +VG A+I MY KCG V ++++F L KD SW+++I GLAM
Sbjct: 496 KWIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LFS M G PDD+TFI ++SACSHGGLV++G F +M V+ I P+ +
Sbjct: 555 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 614
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPI---EAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HY CV+D+ GRAGLL+EAE I+E+PI E ++GALL+ACRIH N +M + + ++L
Sbjct: 615 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + L++N +A DRWEDA K+R +++ +G+KK GCS IEV+
Sbjct: 675 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVD 725
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 136/269 (50%), Gaps = 43/269 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW MI GY E+A++ F+EM++ +P+EAT+V+ LSAC+++ L
Sbjct: 304 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 363
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+Y+ R +L + + NA+++MY KCG + IA +F+ ++ K++I W+++ISG
Sbjct: 364 GDEIHNYV--RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 421
Query: 121 MNGCGRQALQLFS----------LMIING---------------------VFPDDVTFIA 149
G R+A LF +ING V PD T +
Sbjct: 422 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVT 481
Query: 150 LISACSHGGLVDQGLILFKAMS---TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
L++ C+ G ++QG + + ++V T +++MY + G ++++ E+
Sbjct: 482 LLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT----ALIEMYSKCGCVDKSLEIFYEL 537
Query: 207 PIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ + + W +++ C + N + + +R
Sbjct: 538 E-DKDTASWTSII--CGLAMNGKTSEALR 563
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 10/233 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ M+ YA+RG + + +FQ++ + P+ T VL A + + G+ V +I
Sbjct: 211 YNVMVKMYAKRGILRKVLLLFQQL-REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFI 269
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ + + N V N++I+MY + +V A ++F+ + +D +SW+ +ISG A
Sbjct: 270 -VKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 328
Query: 129 LQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ F M G PD+ T ++ +SAC+ ++ G + + E+ T+ ++
Sbjct: 329 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK--ELGFTTRIDNALL 386
Query: 188 DMYGRAGLLEEAEAFIREMPIEAE--W-SVWGALLNACRIHRNDEMFD--PIR 235
DMY + G L A EM ++ W S+ +N + ++FD P+R
Sbjct: 387 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVR 439
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 197/291 (67%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + ++AV++F+EM+ ++ +P++ T+V +L+ C+ + AL G
Sbjct: 391 PVRDVVLWTAMINGYVQFHHFDDAVALFREMQ-IQKIKPDKFTVVTLLTGCAQLGALEQG 449
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H Y+ +++ +VG A+I MY KCG V ++++F L KD SW+++I GLAM
Sbjct: 450 KWIHGYLDENR-ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 508
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LFS M G PDD+TFI ++SACSHGGLV++G F +M V+ I P+ +
Sbjct: 509 NGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVE 568
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPI---EAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HY CV+D+ GRAGLL+EAE I+E+PI E ++GALL+ACRIH N +M + + ++L
Sbjct: 569 HYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 628
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + L++N +A DRWEDA K+R +++ +G+KK GCS IEV+
Sbjct: 629 ENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVD 679
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 135/269 (50%), Gaps = 43/269 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW MI GY E+A++ F+EM++ +P+EAT+V+ LSAC+++ L
Sbjct: 258 MTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLEL 317
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+Y+ R +L + + NA+++MY KCG + IA +F+ ++ K++I W+++ISG
Sbjct: 318 GDEIHNYV--RKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 375
Query: 121 MNGCGRQ-------------------------------ALQLFSLMIINGVFPDDVTFIA 149
G R+ A+ LF M I + PD T +
Sbjct: 376 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVT 435
Query: 150 LISACSHGGLVDQGLILFKAMST---VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
L++ C+ G ++QG + + ++V T +++MY + G ++++ E+
Sbjct: 436 LLTGCAQLGALEQGKWIHGYLDENRITMDVVVGT----ALIEMYSKCGCVDKSLEIFYEL 491
Query: 207 PIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ + + W +++ C + N + + +R
Sbjct: 492 E-DKDTASWTSII--CGLAMNGKTSEALR 517
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 10/233 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ M+ YA+RG + + +FQ++ + P+ T VL A + + G+ V +I
Sbjct: 165 YNVMVKIYAKRGILRKVLLLFQQL-REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFI 223
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ + + N V N++I+MY + +V A ++F+ + +D +SW+ +ISG A
Sbjct: 224 -VKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA 282
Query: 129 LQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ F M G PD+ T ++ +SAC+ ++ G + + E+ T+ ++
Sbjct: 283 INTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRK--ELGFTTRIDNALL 340
Query: 188 DMYGRAGLLEEAEAFIREMPIEAE--W-SVWGALLNACRIHRNDEMFD--PIR 235
DMY + G L A EM ++ W S+ +N + ++FD P+R
Sbjct: 341 DMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVR 393
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 128/291 (43%), Positives = 192/291 (65%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + ++AV++F+EM+ K P+ TLV +L+ C+ + L G
Sbjct: 326 PVRDVVLWTAMINGYVQFNRFDDAVALFREMQ-IKRVSPDRFTLVALLTGCAQLGTLEQG 384
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H YI + + +VG A+I MY KCG + ++++FN L KD SW+++I GLAM
Sbjct: 385 KWIHGYIDEN-KIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAM 443
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LF+ M+ GV PDD+TFI ++SACSHGGLV++G F++M+ VY+I P+ +
Sbjct: 444 NGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLE 503
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HY C++D+ GRAG L+EAE I + P E ++GALL+ACR H N EM + + + L
Sbjct: 504 HYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRL 563
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V + L++N +A ADRWED K+R +++ +G+KK GCS +EVN
Sbjct: 564 VGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 614
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 38/232 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW +I GY + E+AV VF+ M++ PNEAT+V+ LSAC ++ L
Sbjct: 193 MPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLEL 252
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R L + +GNA+++MY KCG + IA ++FN + K +I W++++SG
Sbjct: 253 GKEIHRYV--REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV 310
Query: 121 MNGCGR---------------------------------QALQLFSLMIINGVFPDDVTF 147
CG+ A+ LF M I V PD T
Sbjct: 311 --NCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL 368
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+AL++ C+ G ++QG + + ++ A +++MY + G +E++
Sbjct: 369 VALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTA-LIEMYAKCGFIEKS 419
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 128/277 (46%), Gaps = 22/277 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I + + G +AV +F+++ + + P+ T V A + + G+ V+ ++
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQL-REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N++++MY + G V QVF + +D++SW+ +ISG A
Sbjct: 159 -VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 129 LQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ +F M + + P++ T ++ +SAC +++ G + + + + + +V
Sbjct: 218 VDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGN--ALV 275
Query: 188 DMYGRAGLLEEAEAFIREMPIEAE--W-SVWGALLNACRIHRNDEMFD--PIRQELVNKK 242
DMY + G L A +MPI+ W S+ +N ++ E+F+ P+R
Sbjct: 276 DMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVR------- 328
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279
V + M N + +R++DA + R M +K+
Sbjct: 329 --DVVLWTAMINGYVQFNRFDDAVAL---FREMQIKR 360
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ A ++FN + + ++ VI NG R+A+ LF + G+ PD+ T+ +
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQT----QHYAC--VVDMYGRAGLLEEAEAFIRE 205
A G V +G VY V ++ Y C ++DMY G ++ E
Sbjct: 140 KAIGCLGEVREG-------EKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEE 192
Query: 206 MPIEAEWSVWGALLNA---CRIHRNDEMFDPIRQ 236
MP + + W L++ CR R ++ D R+
Sbjct: 193 MP-QRDVVSWNVLISGYVKCR--RYEDAVDVFRR 223
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 195/292 (66%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW+ MI GY + +E + +FQ+M K EPNE+ LVN LSAC+ + A+
Sbjct: 228 MPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEK-IEPNESVLVNALSACAHLGAMEQ 286
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ++ Y+ R ++ ++ +G A+I+MY KCG V A++VF+ + K++++WS +I+GLA
Sbjct: 287 GQWIERYME-RKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLA 345
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G+ AL LFS M + GV P++VTFI +++ACSH LVD+G F +M+++Y + P
Sbjct: 346 INGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNA 405
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
H+ C+VD+YGRAG+L++A+ I+ MP + ++WGALLNACRIH + E+ + + + L+
Sbjct: 406 HHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLE 465
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A RW+ ++R +R + K GCS+I++ +I
Sbjct: 466 LDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTI 517
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 32/253 (12%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+ T+I YA +AV + EM ++ P+ T +L ACS I +L G+
Sbjct: 97 KPDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGE 156
Query: 63 YVHSYIST---RYDLSVSNLV---------------------------GNAVINMYVKCG 92
+HS++ ++SVSN + N +I Y+KCG
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
A ++F + +D++SWS +I+G ++ L LF M+ + P++ + +S
Sbjct: 217 VFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALS 276
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
AC+H G ++QG + + M + + ++DMY + G +E A +M E
Sbjct: 277 ACAHLGAMEQGQWIERYMER-KNVRLTVRLGTALIDMYSKCGSVERALEVFHKMK-EKNV 334
Query: 213 SVWGALLNACRIH 225
W A++N I+
Sbjct: 335 LAWSAMINGLAIN 347
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 188/292 (64%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +IGGYA G E + F+ M PN+ATLV VLSAC+ + AL
Sbjct: 277 MPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 336
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y +T S VGNA+I+MY KCG + A++VF + KD+I+W+++I GLA
Sbjct: 337 GKWVHVYAAT-IGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 395
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+GCG AL LF M ING PD +TFI ++ +C+H GLV++G F +M Y I PQ
Sbjct: 396 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 455
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAGLL+ A F++ MP+EA+ +W ALL ACRI++N ++ + Q+L+
Sbjct: 456 EHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIV 515
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN + RW+D +++ +R G KK GCS IEVN S+
Sbjct: 516 LEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 567
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 15/227 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALS 59
M +R++V+WT+MI GY C + + E + L N++ S I +
Sbjct: 184 MLERNIVAWTSMISGYI---LCNRVALARRLFDLAPE---RDVVLWNIMVSGYIEIGDMK 237
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + R +S N ++N Y GDV Q+F + +++ SW+ +I G
Sbjct: 238 AARKLFDTMPYRDTMS-----WNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGY 292
Query: 120 AMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NGC + L+ F M+I+G V P+D T + ++SAC+ G +D G + +T+
Sbjct: 293 AHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATI-GFKG 351
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + GL+E A M ++ + W +++ H
Sbjct: 352 SIYVGNALIDMYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATH 397
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 22/223 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V W + GY F E V +F +M K+ + PN T VL +C+ I A G
Sbjct: 84 PDPKVELWNAISRGYFHNAFYREVVFLFGKM-KSMDVRPNCFTFPLVLKSCAKIGAFVEG 142
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + + L + V +I++Y +G A ++F + +++++W+++ISG +
Sbjct: 143 EEIHCEV-IKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL 201
Query: 122 NGCGRQAL--QLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
C R AL +LF L P+ DV ++ + G ++ G + KA +++ +P
Sbjct: 202 --CNRVALARRLFDLA------PERDVVLWNIMVS----GYIEIGDM--KAARKLFDTMP 247
Query: 179 --QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
T + +++ Y G +E E EMP +S W L+
Sbjct: 248 YRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFS-WNGLI 289
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 263 bits (672), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 188/292 (64%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +IGGYA G E + F+ M PN+ATLV VLSAC+ + AL
Sbjct: 319 MPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDL 378
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y +T S VGNA+I+MY KCG + A++VF + KD+I+W+++I GLA
Sbjct: 379 GKWVHVYAAT-IGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 437
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+GCG AL LF M ING PD +TFI ++ +C+H GLV++G F +M Y I PQ
Sbjct: 438 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 497
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAGLL+ A F++ MP+EA+ +W ALL ACRI++N ++ + Q+L+
Sbjct: 498 EHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIV 557
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN + RW+D +++ +R G KK GCS IEVN S+
Sbjct: 558 LEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSV 609
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 106/227 (46%), Gaps = 15/227 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALS 59
M +R++V+WT+MI GY C + + E + L N++ S I +
Sbjct: 226 MLERNIVAWTSMISGYI---LCNRVALARRLFDLAPE---RDVVLWNIMVSGYIEIGDMK 279
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + R +S N ++N Y GDV Q+F + +++ SW+ +I G
Sbjct: 280 AARKLFDTMPYRDTMS-----WNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGY 334
Query: 120 AMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NGC + L+ F M+I+G V P+D T + ++SAC+ G +D G + +T+
Sbjct: 335 AHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATI-GFKG 393
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + GL+E A M ++ + W +++ H
Sbjct: 394 SIYVGNALIDMYSKCGLIENAMEVFESMDLK-DLITWNSMICGLATH 439
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 22/223 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V W + GY F E V +F +M K+ + PN T VL +C+ I A G
Sbjct: 126 PDPKVELWNAISRGYFHNAFYREVVFLFGKM-KSMDVRPNCFTFPLVLKSCAKIGAFVEG 184
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + + L + V +I++Y +G A ++F + +++++W+++ISG +
Sbjct: 185 EEIHCEV-IKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYIL 243
Query: 122 NGCGRQAL--QLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
C R AL +LF L P+ DV ++ + G ++ G + KA +++ +P
Sbjct: 244 --CNRVALARRLFDLA------PERDVVLWNIMVS----GYIEIGDM--KAARKLFDTMP 289
Query: 179 --QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
T + +++ Y G +E E EMP +S W L+
Sbjct: 290 YRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFS-WNGLI 331
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 193/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWT +I GYA+ EA+++F+ M+ +E EP+E ++ LSAC+ + AL
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ-LEEVEPDEIAMLAALSACAHLGALEL 289
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI ++ LS + NA+I+MY KCG + A++VF + +K +I+W+++I GLA
Sbjct: 290 GEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLA 348
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL++FS M N + P+++TF+A++SAC H GLV+ G FK M T Y I P+
Sbjct: 349 LHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C++D+ GRAG L+EA+ +R MP EA +WG+LL A RIH + E+ Q L+
Sbjct: 409 QHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK 468
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A +W +A +R +R G+KK G S IEVN
Sbjct: 469 VEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVN 517
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y K GDV A +F + +++ISW+ VI+G A +A+ +F M + V
Sbjct: 209 NAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE 268
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST--VYEIVPQTQHYACVVDMYGRAGLLEEA 199
PD++ +A +SAC+H G ++ G + + + +IVP ++DMY + G +E+A
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNN---ALIDMYAKCGKIEKA 325
Query: 200 EAFIREMPIEAEWSVWGALLNACRIH 225
+ M ++ + W ++++ +H
Sbjct: 326 LEVFKNMEHKSVIT-WTSMIDGLALH 350
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 195/288 (67%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +M+ YA+ G EA+++F +M + +P EAT+V++LSAC+ + AL
Sbjct: 349 MPCRDVVSWNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDK 407
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+YI+ + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+A
Sbjct: 408 GLHLHTYINDN-RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 466
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++A QLF M GV P+D+TF+A++SACSH G+VD+G L MS+ Y I P+
Sbjct: 467 IHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKV 526
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CV+D+ RAG LEEA I MP+E S GALL CRIH N E+ + + + L+N
Sbjct: 527 EHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 586
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A A +W+DA K+R+ ++ G+ K G S IE+
Sbjct: 587 LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 634
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 121/276 (43%), Gaps = 60/276 (21%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW TMI GYA G +EA +F EM +
Sbjct: 290 RDVISWNTMINGYAIVGKIDEAKRLFDEMPE----------------------------- 320
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
NLV N+++ +VKCG+V A +F+ + +D++SW+++++ A
Sbjct: 321 -------------RNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVP 178
G +AL LF M GV P + T ++L+SAC+H G +D+GL L ++ V IV
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 427
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN----DEMFDPI 234
+VDMY + G + A M + W ++ IH N ++F +
Sbjct: 428 TA-----LVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGNVKEAQQLFKEM 481
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
++ V + TF + + + A ++ K+ D
Sbjct: 482 KEAGVEPNDI---TFVAILSACSHAGMVDEGQKLLD 514
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 13/199 (6%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
EA+ ++ M ++ +P+ T V+ AC+ S FG VH+++ + + + ++
Sbjct: 178 EALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFGLLVHTHV-VKSGFECDSYIVSS 235
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
+I++Y D+G A Q+FN+ + +D++SW+ +I G + A +F M+ D
Sbjct: 236 LIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCR----D 291
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
+++ +I+ + G +D+ LF M +V A V + G +E+A
Sbjct: 292 VISWNTMINGYAIVGKIDEAKRLFDEMPE-RNLVSWNSMLAGFV----KCGNVEDAFGLF 346
Query: 204 REMPIEAEWSVWGALLNAC 222
EMP S W ++L AC
Sbjct: 347 SEMPCRDVVS-WNSML-AC 363
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 193/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWT +I GYA+ EA+++F+ M+ +E EP+E ++ LSAC+ + AL
Sbjct: 231 MPERNVISWTAVIAGYAQMDRPNEAITMFRRMQ-LEEVEPDEIAMLAALSACAHLGALEL 289
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI ++ LS + NA+I+MY KCG + A++VF + +K +I+W+++I GLA
Sbjct: 290 GEWIHNYID-KHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLA 348
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL++FS M N + P+++TF+A++SAC H GLV+ G FK M T Y I P+
Sbjct: 349 LHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C++D+ GRAG L+EA+ +R MP EA +WG+LL A RIH + E+ Q L+
Sbjct: 409 QHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAELGKQALQHLIK 468
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A +W +A +R +R G+KK G S IEVN
Sbjct: 469 VEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGGSCIEVN 517
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 79/146 (54%), Gaps = 6/146 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y K GDV A +F + +++ISW+ VI+G A +A+ +F M + V
Sbjct: 209 NAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVE 268
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST--VYEIVPQTQHYACVVDMYGRAGLLEEA 199
PD++ +A +SAC+H G ++ G + + + +IVP ++DMY + G +E+A
Sbjct: 269 PDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNN---ALIDMYAKCGKIEKA 325
Query: 200 EAFIREMPIEAEWSVWGALLNACRIH 225
+ M ++ + W ++++ +H
Sbjct: 326 LEVFKNMEHKSVIT-WTSMIDGLALH 350
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 194/293 (66%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W+ MI GY + C EA+ +F EM+ + EPN+ T+V+VLSAC+ + AL
Sbjct: 282 MQSRDVVAWSAMISGYTQADQCREALGLFSEMQLAR-VEPNDVTMVSVLSACAVLGALET 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSY+ R LS++ ++G A+++ Y KCG + A++ F + K+ +W+ +I G+A
Sbjct: 341 GKWVHSYVR-RKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMA 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG GR+AL+LFS M G+ P DVTFI ++ ACSH LV++G F +M+ Y I P+
Sbjct: 400 TNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRV 459
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL++EA FIR MPIE +W ALL++C +HRN + + +++++
Sbjct: 460 EHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIIS 519
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A A +W+DA +R E++ G++K GCS IE++ +F
Sbjct: 520 LNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVF 572
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 8/244 (3%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VV W ++ Y + G E V +F+ M + A +E TLV+V++AC I G++V
Sbjct: 186 VVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAF-DEVTLVSVVTACGRIGDAKLGKWVA 244
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
++ LV A+++MY KCG++G A ++F+ + +D+++WS +ISG
Sbjct: 245 GHVDEEGLARNPKLV-TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQC 303
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
R+AL LFS M + V P+DVT ++++SAC+ G ++ G + + + T
Sbjct: 304 REALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRR-KRLSLTTILGTA 362
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQELVNK 241
+VD Y + G +++A MP++ W+ W AL+ R E+F +R+ +
Sbjct: 363 LVDFYAKCGCIDDAVEAFESMPVKNSWT-WTALIKGMATNGRGREALELFSSMREAGIEP 421
Query: 242 KGVS 245
V+
Sbjct: 422 TDVT 425
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 5/207 (2%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSF 60
P + ++ + G E+A+ +F EM A P ++ T L +CS + AL
Sbjct: 79 PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V +Y R L V +++I+MY CGDV A VF+ ++ W+ +++
Sbjct: 139 GRGVQAYAVKR-GLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYL 197
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQ 179
NG + +++F M+ GV D+VT +++++AC G + D L + A E +
Sbjct: 198 KNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTAC--GRIGDAKLGKWVAGHVDEEGLARN 255
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++DMY + G + +A M
Sbjct: 256 PKLVTALMDMYAKCGEIGKARRLFDGM 282
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 196/289 (67%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW +MI G A++G +E++ +F++M++ +P++ TLV VL++C+++ L
Sbjct: 266 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCANLGVLEL 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ R + +GNA+++MY KCG + A VF + KD+ S++ +I GLA
Sbjct: 325 GKWVHAYLD-RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL LFS M G+ PD+VTF+ +++ACSH GLV++G F+ MST+Y + PQ
Sbjct: 384 MHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQL 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+ EAE FIR MPIE + V GALL AC+IH E+ + + +++
Sbjct: 444 EHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + LMSN ++ A+RW DA K+R ++ L+K GCS IE++
Sbjct: 504 IEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELD 552
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 51/204 (25%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+VSWTTMI GY + GF E V +
Sbjct: 202 PQRDLVSWTTMIQGYVKMGFAREGVGL--------------------------------- 228
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
YI ++++ VGNA+++MY+KCGD A +VF + K+++SW+++ISGLA
Sbjct: 229 -----YIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 283
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G +++L +F M GV PDDVT +A++++C++ G+++ G V+ + + Q
Sbjct: 284 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG-------KWVHAYLDRNQ 336
Query: 182 HYA------CVVDMYGRAGLLEEA 199
A +VDMY + G +++A
Sbjct: 337 IRADGFIGNALVDMYAKCGSIDQA 360
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
E + V+++M +K P+ T+ VL AC+ A+ G+ VH + + L+ V N
Sbjct: 123 EGLVVYKQM-LSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQ-AIKMGLASDVYVSNT 180
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
++ MY C + A +VF+ +D++SW+T+I G G R+ + L+
Sbjct: 181 LMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLY 229
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 126/285 (44%), Positives = 193/285 (67%), Gaps = 2/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW TMI GYA G EA+++F +M + +P EAT+V++LSAC+ + AL G +
Sbjct: 261 RDVISWNTMINGYAICGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDKGLH 319
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+YI+ + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+A++G
Sbjct: 320 LHTYINDN-RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHG 378
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++A QLF M GV P+D+TF+A++SACSH G+VD+G L MS+ Y I P+ +HY
Sbjct: 379 NVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY 438
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
CV+D+ RAG LEEA I MP+E S GALL CRIH N E+ + + + L+N +
Sbjct: 439 GCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQP 498
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + L+SN +A A +W+DA K+R+ ++ G+ K G S IE+
Sbjct: 499 CHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 543
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 130/285 (45%), Gaps = 48/285 (16%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI--------------- 68
EA+ ++ M ++ +P+ T V+ AC+ S FG VH+++
Sbjct: 149 EALPLYHTMLQSG-LKPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSL 207
Query: 69 ----STRYDLSVS----NLVG-------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
+ DL + NL NA+I+ YVK ++G A VF+ + +D+ISW+
Sbjct: 208 IHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWN 267
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST- 172
T+I+G A+ G +AL LF M GV P + T ++L+SAC+H G +D+GL L ++
Sbjct: 268 TMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDN 327
Query: 173 ---VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-- 227
V IV +VDMY + G + A M + W ++ IH N
Sbjct: 328 RIEVNSIVG-----TALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGNVK 381
Query: 228 --DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
++F +++ V + TF + + + A ++ K+ D
Sbjct: 382 EAQQLFKEMKEAGVEPNDI---TFVAILSACSHAGMVDEGQKLLD 423
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV++W T+I G A G +EA +F+EM K EPN+ T V +LSACS +
Sbjct: 359 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEM-KEAGVEPNDITFVAILSACSHAGMVDE 417
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
GQ + +S+ Y + VI++ + G + A+++ +
Sbjct: 418 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTM 461
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 196/289 (67%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW +MI G A++G +E++ +F++M++ +P++ TLV VL++C+++ L
Sbjct: 288 MPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLG-VKPDDVTLVAVLNSCANLGVLEL 346
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ R + +GNA+++MY KCG + A VF + KD+ S++ +I GLA
Sbjct: 347 GKWVHAYLD-RNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 405
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL LFS M G+ PD+VTF+ +++ACSH GLV++G F+ MST+Y + PQ
Sbjct: 406 MHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQL 465
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+ EAE FIR MPIE + V GALL AC+IH E+ + + +++
Sbjct: 466 EHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEK 525
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + LMSN ++ A+RW DA K+R ++ L+K GCS IE++
Sbjct: 526 IEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELD 574
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 126/204 (61%), Gaps = 14/204 (6%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+VSWTTMI GY + GF E V +F EM + + + TLV VLS+C+ + L G
Sbjct: 187 PQRDLVSWTTMIQGYVKMGFAREGVGLFFEM-CGENLQADGMTLVIVLSSCARLGDLRLG 245
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H YI ++++ VGNA+++MY+KCGD A +VF + K+++SW+++ISGLA
Sbjct: 246 RKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQ 305
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G +++L +F M GV PDDVT +A++++C++ G+++ G V+ + + Q
Sbjct: 306 KGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELG-------KWVHAYLDRNQ 358
Query: 182 HYA------CVVDMYGRAGLLEEA 199
A +VDMY + G +++A
Sbjct: 359 IRADGFIGNALVDMYAKCGSIDQA 382
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 3/198 (1%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
E + V+++M +K P+ T+ VL AC+ A+ G+ VH + + L+ V N
Sbjct: 108 EGLVVYKQM-LSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQ-AIKMGLASDVYVSNT 165
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
++ MY C + A +VF+ +D++SW+T+I G G R+ + LF M + D
Sbjct: 166 LMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQAD 225
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
+T + ++S+C+ G + G L + + + +VDMY + G A
Sbjct: 226 GMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVF 285
Query: 204 REMPIEAEWSVWGALLNA 221
+EMP++ S W ++++
Sbjct: 286 QEMPVKNVVS-WNSMISG 302
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 126/288 (43%), Positives = 195/288 (67%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +M+ YA+ G EA+++F +M + +P EAT+V++LSAC+ + AL
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDK 212
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+YI+ + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+A
Sbjct: 213 GLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 271
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++A QLF M V P+D+TF+A++SACSH G+VD+G L MS+ Y I P+
Sbjct: 272 IHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 331
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CV+D+ RAGLLEEA I MP+E S GALL CRIH N E+ + + + L+N
Sbjct: 332 EHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 391
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A A +W+DA K+R+ ++ G+ K G S IE+
Sbjct: 392 LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 439
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 127/272 (46%), Gaps = 21/272 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSW MI GY +RG VF M +V+S + I+ +
Sbjct: 64 RDVVSWNAMIDGYVKRGEMGHTRMVFDRM-----------VCRDVISWNTIINGYAIVGK 112
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ ++ NLV N++++ +VKCG+V A +F+ + +D++SW+++++ A
Sbjct: 113 IDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQC 172
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL LF M GV P + T ++L+SAC+H G +D+GL L ++ I +
Sbjct: 173 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIND-NRIEVNSIV 231
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN----DEMFDPIRQEL 238
+VDMY + G + A M + W ++ IH + ++F +++
Sbjct: 232 GTALVDMYAKCGKISLATQVFNAME-SKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEAS 290
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
V + TF M + + A ++ K+ D
Sbjct: 291 VEPNDI---TFVAMLSACSHAGMVDEGQKLLD 319
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 16/177 (9%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
V+ AC+ S FG VH+++ + + + N++I++Y D+G A Q+F++ + +
Sbjct: 6 VIKACNESSVTWFGLLVHTHV-VKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDR 64
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
D++SW+ +I G G +F M+ V +++ +I+ + G +D+ LF
Sbjct: 65 DVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDV----ISWNTIINGYAIVGKIDEAKRLF 120
Query: 168 KAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
M P+ + ++ + + G +EEA EMP S W ++L AC
Sbjct: 121 DEM-------PERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVS-WNSML-AC 168
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 194/292 (66%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DV+SW TMIGGY + EA+++F EM++ E++P+ T+ +L AC+S++AL
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR--ESKPDGTTVACILPACASLAALDK 572
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R S V NAV++MYVKCG + +A +F+M+ KD++SW+ +I+G
Sbjct: 573 GREIHGY-ALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYG 631
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M + G+ PD+V+FI+++ ACSH GL+D+G +F M +I P
Sbjct: 632 MHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNL 691
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L +A FI+ MPI+ + ++WGALL CRIH + ++ + + + +
Sbjct: 692 EHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFE 751
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L++N +A A++WE+ K+R +I + GLKK GCSWIE+ I
Sbjct: 752 LEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKI 803
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 8/217 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ VVSWT+MI GY G + A+ +F EM K++ P+ + ++L+AC+ L
Sbjct: 414 MDEKTVVSWTSMITGYVREGLSDGAIKLFDEM-KSRGVVPDVYAVTSILNACAINGNLKS 472
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +L ++ V NA+ +MY KCG + A VF+ + KD+ISW+T+I G
Sbjct: 473 GKIVHDYIREN-NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYT 531
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
N +AL LF+ M PD T ++ AC+ +D+G I A+ Y
Sbjct: 532 KNSLPNEALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKY 590
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+ VVDMY + GLL A + +P + W+V
Sbjct: 591 VTN--AVVDMYVKCGLLVLARSLFDMIPNKDLVSWTV 625
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 6/208 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDV+SW +MI GY + G + + +F +M + + AT+VNV AC++I L
Sbjct: 312 LTDRDVISWNSMISGYVKNGLDDRGIEIFIKM-LVFGVDIDLATMVNVFVACANIGTLLL 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HSY L N +++MY KCGD+ AI+VF + K ++SW+++I+G
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A++LF M GV PD ++++AC+ G + G I+ + E +T
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVH---DYIRENNLET 487
Query: 181 QHYA--CVVDMYGRAGLLEEAEAFIREM 206
+ + DMY + G +++A M
Sbjct: 488 NSFVSNALTDMYAKCGSMKDAHDVFSHM 515
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 99/191 (51%), Gaps = 2/191 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI Y+ G E++++F++M + +PN T ++L ++++ + G+ VH I
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELG-IKPNSYTFSSILKCFAAVARVEEGRQVHGLI 277
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ + N V N++I+ Y V A ++F+ L +D+ISW+++ISG NG +
Sbjct: 278 -CKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRG 336
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+++F M++ GV D T + + AC++ G + G +L + + + ++D
Sbjct: 337 IEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLD 396
Query: 189 MYGRAGLLEEA 199
MY + G L A
Sbjct: 397 MYSKCGDLNSA 407
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
++L C+ ++ G+ V S I + + + ++G ++ MYVKCGD+ VF+ L+
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESS-GVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSE 213
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ W+ +IS + +G +++ LF M+ G+ P+ TF +++ + V++G
Sbjct: 214 SKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEG 270
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 188/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VVSW+ +IGG+A +G EEA+ +F+ M+ K + N T+ +VLS C+ ++AL
Sbjct: 1209 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHL 1267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R + + LVGN +INMY K G VF + KD+ISW+T+++G
Sbjct: 1268 GREIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 1326
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A++ F MI +G PD VTF+A++SACSH GLV +G LF M + + PQ
Sbjct: 1327 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 1386
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAGLL+EA ++ MP+E VWGALLN+CR+H+N E+ + ++ N
Sbjct: 1387 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 1446
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN +A + RWED+ K+R + GLKK G SWI+V ++
Sbjct: 1447 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 1499
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W +++ G+CEEA+ ++ M K + T V+ AC+ + + + V
Sbjct: 937 NLLLWNSILRANVAHGYCEEALEIYCRMRKLG-VSADGFTFPLVIRACALMGSRKLCRSV 995
Query: 65 HSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H ++ +++L V GN ++ MY K G + A +VF +A + +SW+T++SG A+
Sbjct: 996 HGHVVEMGFQWNLHV----GNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 1051
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
N A ++F +M G+ P+ VT+ +L+S+ + G + + LF M
Sbjct: 1052 NYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 1100
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 195/292 (66%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSWT+MI GYA G + +V +F EMEK ++ PN T+ +L AC+S++AL
Sbjct: 285 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EDLFPNSITMACILPACASLAALER 343
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H +I R S+ V NA+++MY+KCG +G+A +F+M+ KD++SW+ +I+G
Sbjct: 344 GQEIHGHI-LRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 402
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M +G+ PD+V+FI+++ ACSH GL+D+G F M I P++
Sbjct: 403 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKS 462
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ RAG L +A FI+ MPIE + ++WGALL CRI+ + ++ + + + +
Sbjct: 463 EHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFE 522
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L++N +A A++WE+ K+R+ I R GL+K GCSWIE+ +
Sbjct: 523 LEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKV 574
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 53/233 (22%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E+ + +F++M L G
Sbjct: 214 RDVISWNSMISGYVSNGLSEKGLDLFEQM-------------------------LLLG-- 246
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+++ ++T +SV + N +++MY K G++ AIQVF + + ++SW+++I+G A G
Sbjct: 247 INTDLATM--VSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREG 304
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMST 172
+++LF M +FP+ +T ++ AC+ HG ++ G L + ++
Sbjct: 305 LSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN 364
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G L A +P E + W ++ +H
Sbjct: 365 A------------LVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMH 404
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 22/177 (12%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
T +VL C+ + ++ G+ +HS I + D+ V ++G+ ++ MYV CGD+ ++F+
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSN-DVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF--------------PDDVTFIA 149
+A + + W+ +++G A G R++L LF M G+ D +++ +
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221
Query: 150 LISACSHGGLVDQGLILFKAM-------STVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+IS GL ++GL LF+ M + + C++DMY ++G L A
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSA 278
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 195/289 (67%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +M+ YA+ G EA+++F +M + +P EAT+V++LSAC+ + AL
Sbjct: 174 MPCRDVVSWNSMLACYAQCGKPNEALALFDQM-RAVGVKPTEATVVSLLSACAHLGALDK 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+YI+ + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+A
Sbjct: 233 GLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 291
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++A +LF M GV P+D+TF+A++SACSH G+VD+G L MS+ Y I P+
Sbjct: 292 IHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CV+D+ RAGLLEEA I MP+E GALL CRIH N E+ + + + L+N
Sbjct: 352 EHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLIN 411
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A A +W+DA K+R+ ++ G+ K G S IE+
Sbjct: 412 LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELK 460
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A +F+ + +D++SW+++++ A G +AL LF M GV P + T ++L+SAC+H
Sbjct: 167 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAH 226
Query: 157 GGLVDQGLILFKAMST----VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
G +D+GL L ++ V IV +VDMY + G + A M +
Sbjct: 227 LGALDKGLHLHTYINDNRIEVNSIVGTA-----LVDMYAKCGKISLATQVFNAME-SKDV 280
Query: 213 SVWGALLNACRIHRN----DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
W ++ IH + +F +++ V + TF M + + A ++ K+
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDI---TFVAMLSACSHAGMVDEGQKL 337
Query: 269 RD 270
D
Sbjct: 338 LD 339
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +I GYA+ G EEA+++ EM++ E+ N +T LSAC+ I+AL
Sbjct: 338 MPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGES-LNRSTFCCALSACADIAALEL 396
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + R LVGNA++ MY KCG + A VF + +KD++SW+T+++G A
Sbjct: 397 GKQVHGQV-VRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYA 455
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GRQAL +F MI GV PD++T + ++SACSH GL D+G F +M+ Y I P +
Sbjct: 456 RHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNS 515
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GRAG LEEA+ IR MP E + + WGALL A RIH N E+ + + +
Sbjct: 516 KHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFK 575
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW D +K+R ++R++G++K G SW+EV I
Sbjct: 576 MEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKI 627
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW M+ GY G +EA VF M N + +L+A L
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM-----PHKNSISWNGLLAAYVRSGRLEE 175
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + S +S + L+G YVK +G A Q+F+ + +D+ISW+T+ISG A
Sbjct: 176 ARRLFESKSDWELISCNCLMGG-----YVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G QA +LF + VF T+ A++ A G++D+ +F M E+
Sbjct: 231 QDGDLSQARRLFEESPVRDVF----TWTAMVYAYVQDGMLDEARRVFDEMPQKREMS--- 283
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPI 208
Y ++ Y + ++ EMP
Sbjct: 284 --YNVMIAGYAQYKRMDMGRELFEEMPF 309
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 21/203 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT M+ Y + G +EA VF EM + +E N +++ + + G
Sbjct: 246 PVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNV-----MIAGYAQYKRMDMG 300
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ N+ N +I+ Y + GD+ A +F+M+ +D +SW+ +I+G A
Sbjct: 301 RELFE------EMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYA 354
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYE---I 176
NG +A+ + M +G + TF +SAC+ ++ G + + + T YE +
Sbjct: 355 QNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCL 414
Query: 177 VPQTQHYACVVDMYGRAGLLEEA 199
V +V MY + G ++EA
Sbjct: 415 VGNA-----LVGMYCKCGCIDEA 432
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA+I+ Y++ +A +F+ + +KD+ SW+ +++G A N R A LF M V
Sbjct: 68 NAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDV- 126
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ A++S G VD+ +F M I + ++ Y R+G LEEA
Sbjct: 127 ---VSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS-----WNGLLAAYVRSGRLEEAR- 177
Query: 202 FIREMPIEAEWSV 214
R +++W +
Sbjct: 178 --RLFESKSDWEL 188
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++VSW +MI G A +G +EA+ +F+ M+ T +P+ TLV VL++C+++ L
Sbjct: 299 MPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQ-TMGLKPDSVTLVGVLNSCANLGDLEL 357
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI + + V NA+++MY KCG + A VF + KD+ S++ +I G A
Sbjct: 358 GKWVHSYIDKNH-MKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFA 416
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL +FS M GV PD VT + ++SACSH GL+++G F+ MS +Y + PQT
Sbjct: 417 MHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQT 476
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+ EAEAF +MPI + SVWG+LL AC+IH E+ + + Q+L+
Sbjct: 477 EHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIE 536
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + LMSN ++ A+RW DA K R +++ +KK GCS IEV+
Sbjct: 537 MEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVD 585
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 125/219 (57%), Gaps = 18/219 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D++SWTT+I Y++ G+ EA++ F M T + TLV VLSACS + + G
Sbjct: 200 PHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTAD----RMTLVVVLSACSQLGDFTLG 255
Query: 62 QYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + +Y+ +D+ +GNA+++MY+KCG +A Q+F+++ K+++SW+++ISGLA
Sbjct: 256 KKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLA 315
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++AL +F M G+ PD VT + ++++C++ G ++ G V+ + +
Sbjct: 316 HQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELG-------KWVHSYIDKN 368
Query: 181 QHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
A +VDMY + G +++A + M + +S
Sbjct: 369 HMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYS 407
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ TL +L ACS A +H++ S + LS + V N ++ Y G + +
Sbjct: 136 PDTYTLPYLLKACSQSHAFIEALQIHAH-SIKTGLSSNLFVKNTLMRFYAVSGFIEAVEK 194
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF+ + D+ISW+T+I + G +A+ F M D +T + ++SACS G
Sbjct: 195 VFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSACSQLGD 251
Query: 160 VDQGLILFKAMS-TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
G + M ++++ ++DMY + G A MP++
Sbjct: 252 FTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVK 302
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 188/287 (65%), Gaps = 2/287 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFG 61
+R+VV+WT MIGGYA+ G +A+ +F EM K PN T+ +L AC+ ++AL G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMG 531
Query: 62 QYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+Y++ ++ S V N +I+MY KCGDV A VF+ + ++ +SW++++SG
Sbjct: 532 KQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++AL +F M G PDD++F+ L+ ACSH G+VDQGL F M Y++V
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASA 651
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACV+D+ R G L++A I+EMP+E +W ALL+ACR+H N E+ + +LVN
Sbjct: 652 EHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVN 711
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
K + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 712 MKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 19/245 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV++W+ +I GYA+RG +EA+ FQ+M +EPN T++++LSAC+S+ ALS G +
Sbjct: 359 DVITWSAVIAGYAQRGCSQEALDAFQQM-ILDGSEPNSVTIISLLSACASLGALSQGMEI 417
Query: 65 HSYISTRYDLSVSN-----------LVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MIS 111
H+Y + LS+ N +V NA+I+MY KC A +F+ + ++ +++
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVT 477
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKA 169
W+ +I G A G AL++FS MI V P+ T ++ AC+H + G +
Sbjct: 478 WTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAY 537
Query: 170 MSTVYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RN 227
++ +E P A C++DMY + G ++ A MP E S W ++++ +H R
Sbjct: 538 VTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRG 596
Query: 228 DEMFD 232
E D
Sbjct: 597 KEALD 601
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 113/254 (44%), Gaps = 52/254 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F EM EK + ++VN+L AC+S+ AL
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALP 276
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------- 111
+ +HSY + R V NA+I+ Y KCG + A++VFN++ +KD++S
Sbjct: 277 QIKEIHSY-AIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGY 335
Query: 112 ---------------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
WS VI+G A GC ++AL F MI++G P+
Sbjct: 336 TQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNS 395
Query: 145 VTFIALISACSHGGLVDQG-----------LILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
VT I+L+SAC+ G + QG L+ Y ++DMY +
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455
Query: 194 GLLEEAEAFIREMP 207
+ A + +P
Sbjct: 456 RSFKAARSIFDSIP 469
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 106/251 (42%), Gaps = 35/251 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ + + G + A+ V M + +P+ TL L AC + + G+ +H I
Sbjct: 117 WNLLVREHIKEGHLDRAIGVSCRMLRAG-TKPDHFTLPYALKACGELPSYCCGRALHGLI 175
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG 125
+ V NA++ MY +CG + A VF+ + K D+ISW+++++
Sbjct: 176 CCN-GFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNP 234
Query: 126 RQALQLFSLMII------NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
R AL+LFS M + D ++ + ++ AC+ KA+ + EI
Sbjct: 235 RTALELFSEMSMIVHEKATNERSDIISIVNILPACAS----------LKALPQIKEIHSY 284
Query: 180 -------TQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN--- 227
+ C ++D Y + G + +A M + S W A++ N
Sbjct: 285 AIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVS-WNAMVTGYTQSGNFGA 343
Query: 228 -DEMFDPIRQE 237
E+F+ +R+E
Sbjct: 344 AFELFENMRKE 354
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKR+ VSWT+M+ GY G +EA+ +F +M+K P++ + + +L ACS +
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV-PDDISFLVLLYACSHSGMVDQ 633
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
G + YD+ S VI++ +CG
Sbjct: 634 GLNYFDIMRRDYDVVASAEHYACVIDLLARCG 665
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 22/149 (14%)
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HSY+S + +G V+ Y+ CG A+ V + + W+ ++ G
Sbjct: 77 HSYVSPKS-------LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGH 129
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQ 179
+A+ + M+ G PD T + AC G GLI +
Sbjct: 130 LDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGF--------E 181
Query: 180 TQHYAC--VVDMYGRAGLLEEAEAFIREM 206
+ + C +V MY R G LE+A E+
Sbjct: 182 SNVFVCNALVAMYSRCGSLEDASLVFDEI 210
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 190/287 (66%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW T+IGGY +EA+ +FQEM ++ E+ PN+ T+++VL AC+ + A+ G++
Sbjct: 280 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTMLSVLPACAHLGAIDIGRW 338
Query: 64 VHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI R ++ + + ++I+MY KCGD+ A QVFN + +K + SW+ +I G AM+
Sbjct: 339 IHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMH 398
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A LFS M NG+ PDD+T + L+SACSH GL+D G +FK+++ Y I P+ +H
Sbjct: 399 GRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEH 458
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G AGL +EAE I MP+E + +W +LL AC++H N E+ + Q+L+ +
Sbjct: 459 YGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIE 518
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G++ L+SN +A A RWED +IR+ + G+KK GCS IE++
Sbjct: 519 PENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEID 565
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 4/234 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RDVVSW MI GY E EEA+ +F+EM +T P+E TLV+VLSAC+ ++
Sbjct: 175 ITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN-VRPDEGTLVSVLSACAQSGSIEL 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + S + NA I +Y KCGDV IA +F L+ KD++SW+T+I G
Sbjct: 234 GREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYT 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 294 HMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNG 353
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+ ++DMY + G +E A M + S W A++ +H R + FD
Sbjct: 354 SALRTSLIDMYAKCGDIEAAHQVFNSM-MHKSLSSWNAMIFGFAMHGRANAAFD 406
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 33/190 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM+ G A + ++ M PN T +L +C+ G+ +
Sbjct: 47 NLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHV-PNAYTFPFLLKSCAKSKTFEEGRQI 105
Query: 65 HSYISTRYDLSVSNLVGNAVINMY---------------------VKC----------GD 93
H+ + + + ++I+MY V C GD
Sbjct: 106 HAQV-MKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGD 164
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
V A +VF+ + +D++SW+ +I+G N +AL+LF M+ V PD+ T ++++SA
Sbjct: 165 VRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSA 224
Query: 154 CSHGGLVDQG 163
C+ G ++ G
Sbjct: 225 CAQSGSIELG 234
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + SW MI G+A G A +F M K EP++ TLV +LSACS L
Sbjct: 380 MMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNG-IEPDDITLVGLLSACSHSGLLDL 438
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+++ ++ Y+++ +I++ G A ++ +M+ + D + W +++
Sbjct: 439 GRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKAC 498
Query: 120 AMNG 123
M+G
Sbjct: 499 KMHG 502
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A+ VF +++ W+T++ GLA + L+++ M+ G P+ TF L+ +C+
Sbjct: 36 AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA 199
++G + + V ++ + YA ++ MY R G LE+A
Sbjct: 96 SKTFEEGR---QIHAQVMKLGCELDRYAHTSLISMYARNGRLEDA 137
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 130/288 (45%), Positives = 190/288 (65%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ +SW MI GYA+ G +EA+++F+EM+ + EPN A LV+VLSACS + AL
Sbjct: 184 MTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQ-EPNSAILVSVLSACSQLGALDH 242
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI + + V +++ A+I+MY KCG + +A+Q F+ +D+ +++ ISGLA
Sbjct: 243 GCWVHCYIGKKC-VRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLA 301
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNGC +ALQLF M G+ PD V++IA++ ACSH G V++G F +MS V+ I P+
Sbjct: 302 MNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPEL 361
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+ GRAGLLEEAE F+ MPI+ + +WGALL ACR++ N EM + LV
Sbjct: 362 DHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVE 421
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + L+SN +A + + EDA ++R +RR + + GCS IEV
Sbjct: 422 SDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEV 469
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 48/246 (19%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCG------ 92
PN T + CS+ A G+ H I +++ V V N++I Y CG
Sbjct: 90 PNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDV--FVRNSIIRFYSVCGRLNDAR 147
Query: 93 -------------------------DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ A+ +F+ + ++ ISW+ +ISG A NG ++
Sbjct: 148 WVFDESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKE 207
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHY 183
AL LF M + P+ ++++SACS G +D G + K V I+
Sbjct: 208 ALALFREMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILS----- 262
Query: 184 ACVVDMYGRAGLLEEA-EAF--IREMPIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239
A ++DMY + G ++ A +AF R+ + A ++ G +N C ++F+ ++ E +
Sbjct: 263 AALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCS-EEALQLFEQMKGEGI 321
Query: 240 NKKGVS 245
+ GVS
Sbjct: 322 SPDGVS 327
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 31/322 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQ---------------------EMEKTKE-- 37
MP RD V+ T MI Y+E GF +EA+ +FQ EM K E
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 38 -------AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
NE T V VLSACS + AL G++VHS++ + + +SN VGNA+INMY +
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR-MELSNFVGNALINMYSR 302
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CGD+ A +VF ++ KD+IS++T+ISGLAM+G +A+ F M+ G P+ VT +AL
Sbjct: 303 CGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVAL 362
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
++ACSHGGL+D GL +F +M V+ + PQ +HY C+VD+ GR G LEEA FI +PIE
Sbjct: 363 LNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEP 422
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ + G LL+AC+IH N E+ + I + L + GT+ L+SN +A + +W+++ +IR+
Sbjct: 423 DHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRE 482
Query: 271 EIRRMGLKKKTGCSWIEVNPSI 292
+R G++K+ GCS IEV+ I
Sbjct: 483 SMRDSGIEKEPGCSTIEVDNQI 504
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 44 TLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
TL++VL +C +I+ + +H+ I T +D V +I + V A VF+
Sbjct: 31 TLISVLRSCKNIAHVP---SIHAKIIRTFHDQDA--FVVFELIRVCSTLDSVDYAYDVFS 85
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS------- 155
++ ++ ++ +I G +G + L+ MI N V PD+ +++ AC
Sbjct: 86 YVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREI 145
Query: 156 HGGLVDQGL-----ILFKAM------------STVYEIVPQTQHYACVV--DMYGRAGLL 196
H ++ G + K M +++ +P H A V + Y G +
Sbjct: 146 HAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFI 205
Query: 197 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
+EA +++ I+ + W A+++ + RN EM
Sbjct: 206 KEALELFQDVKIK-DTVCWTAMIDG--LVRNKEM 236
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 259 bits (663), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 190/287 (66%), Gaps = 2/287 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFG 61
+R+VV+WT MIGGYA+ G +A+ +F EM K PN T+ +L AC+ +S+L G
Sbjct: 472 ERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMG 531
Query: 62 QYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+Y++ ++ S V N +I+MY KCGDV A VF+ + ++ +SW++++SG
Sbjct: 532 KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++AL +F M G PDD++F+ L+ ACSH G+VDQGL F M + Y ++
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASA 651
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYACV+D+ R+G L++A I+EMP+E ++W ALL+ACR+H N E+ + +LV+
Sbjct: 652 QHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVS 711
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
K + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 712 MKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 130/245 (53%), Gaps = 19/245 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV++W+ +I GYA+RG+ +EA+ FQ+M +EPN T++++LSAC+S+ ALS G
Sbjct: 359 DVITWSAVIAGYAQRGYGQEALDTFQQM-ILYGSEPNSVTIISLLSACASLGALSQGMET 417
Query: 65 HSYISTRYDLSVSN-----------LVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MIS 111
H+Y + LS+ N +V NA+I+MY KC A +FN + ++ +++
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVT 477
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKA 169
W+ +I G A G AL+LFS MI V P+ T ++ AC+H + G +
Sbjct: 478 WTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAY 537
Query: 170 MSTVYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RN 227
++ +E A C++DMY + G ++ A MP E S W ++++ +H R
Sbjct: 538 VTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMHGRG 596
Query: 228 DEMFD 232
E D
Sbjct: 597 KEALD 601
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 41/200 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F EM EK + ++VN+L AC+S+ AL
Sbjct: 217 DVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALP 276
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------- 111
+ +HSY + R V NA+I+ Y KCG + A+ VFN++ +KD++S
Sbjct: 277 QTKEIHSY-AIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGY 335
Query: 112 ---------------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
WS VI+G A G G++AL F MI+ G P+
Sbjct: 336 TQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNS 395
Query: 145 VTFIALISACSHGGLVDQGL 164
VT I+L+SAC+ G + QG+
Sbjct: 396 VTIISLLSACASLGALSQGM 415
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ + E G + A+ V M + +P+ TL L AC + + G H I
Sbjct: 117 WNLLVRAHIEEGRLDRAIGVSCRMLRAG-TKPDHFTLPYALKACGELPSYRSGSAFHGLI 175
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG 125
+ V NA++ MY + G + A VF+ + K D+ISW+++++
Sbjct: 176 CCN-GFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNP 234
Query: 126 RQALQLFSLM 135
R AL LFS M
Sbjct: 235 RTALDLFSEM 244
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
MPKR+ VSWT+M+ GY G +EA+ +F +M+K P++ + + +L ACS
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFV-PDDISFLVLLYACS 626
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HSY+S + +G V+ Y+ CG A+ V + + W+ ++ G
Sbjct: 77 HSYVSPKS-------LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGR 129
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQ 179
+A+ + M+ G PD T + AC G GLI +
Sbjct: 130 LDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGF--------E 181
Query: 180 TQHYAC--VVDMYGRAGLLEEAEAFIREM 206
+ + C +V MY R+G LE+A E+
Sbjct: 182 SNVFVCNALVAMYSRSGSLEDASLVFDEI 210
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 125/289 (43%), Positives = 192/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W+ MI GY + C EA+++F EM+ E EPN+ T+V+VLSAC+ + AL
Sbjct: 281 MQSRDVVAWSAMISGYTQADQCREALALFSEMQ-LAEVEPNDVTMVSVLSACAVLGALET 339
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI R LS++ ++G A+++ Y KCG + A++ F + K+ +W+ +I G+A
Sbjct: 340 GKWVHSYIR-RKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMA 398
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG GR+AL+LFS M + P DVTFI ++ ACSH LV++G F +M+ Y I P+
Sbjct: 399 TNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRA 458
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAGL++EA FIR MPIE +W ALL++C +H+N E+ + +++V+
Sbjct: 459 EHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVS 518
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A +W++A IR E++ G++K GCS IE++
Sbjct: 519 LNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELD 567
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 132/249 (53%), Gaps = 18/249 (7%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VV W +I Y + G E V +F+ M + A +E TLV+V++AC I G++V
Sbjct: 185 VVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF-DEITLVSVVTACGRIGDAKLGKWVA 243
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
Y+ + + NL+ A+I+MY KCG++G A ++F+ + +D+++WS +ISG
Sbjct: 244 EYVDEKGLVRNRNLM-TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQC 302
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQT 180
R+AL LFS M + V P+DVT ++++SAC+ G ++ G I K +S I+ T
Sbjct: 303 REALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLT--IILGT 360
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQ 236
+VD Y + G +++A MP++ W+ W AL+ R E+F +R+
Sbjct: 361 A----LVDFYAKCGCIDDAVEAFESMPVKNSWT-WTALIKGMATNGRGREALELFSSMRK 415
Query: 237 ELVNKKGVS 245
+ V+
Sbjct: 416 ASIEPTDVT 424
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 94/205 (45%), Gaps = 2/205 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P + ++ G E+A+ +F EM P++ T+ L +CS + L G
Sbjct: 79 PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + +Y R L V +++I+MY C DV A +F+ + ++ W+ +I+
Sbjct: 139 RGIQAYAVKR-GLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMK 197
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG + +++F M+ GV D++T +++++AC G G + + + +V
Sbjct: 198 NGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDE-KGLVRNRN 256
Query: 182 HYACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G L +A M
Sbjct: 257 LMTALIDMYAKCGELGKARRLFDGM 281
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 196/294 (66%), Gaps = 5/294 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + +EAV++F+EM+ ++ +P++ +V++L+ C+ A+ G
Sbjct: 331 PIRDVVIWTAMINGYVQFNRFDEAVALFREMQ-IRKVKPDKFIVVSLLTGCAQTGAIEQG 389
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H +I + + +VG A+I MY KCG + A+++F L KD SW+++I GLAM
Sbjct: 390 KWIHEFIDEN-RIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAM 448
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LFS M GV PDD+TFI ++SACSHGGLV++G F +M Y+I P+ +
Sbjct: 449 NGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVE 508
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNACRIHRNDEMFDPIRQEL 238
HY C+VD+ GRAGLL EAE I+++P E + ++G+LL+ACRI+ N EM + + ++L
Sbjct: 509 HYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQL 568
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
V + L++N +A ADRWED K+R +++ +G+KK GCS IEV+ I
Sbjct: 569 VKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSII 622
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 139/279 (49%), Gaps = 55/279 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SW MI GY + E+A++VF M++ P+EAT+V+ LSAC+++ L
Sbjct: 198 MPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLEL 257
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R ++ + ++GNA+++MY KCG + IA VF + K++I W+T++SG A
Sbjct: 258 GKKIHHYV--RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYA 315
Query: 121 MNGCGR---------------------------------QALQLFSLMIINGVFPDDVTF 147
CG +A+ LF M I V PD
Sbjct: 316 --NCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIV 373
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEA 201
++L++ C+ G ++QG ++E + + + +++MY + G +E+A
Sbjct: 374 VSLLTGCAQTGAIEQG-------KWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALE 426
Query: 202 FIREMPIE--AEWS--VWGALLNACRIHRNDEMFDPIRQ 236
+ ++ A W+ + G +N + + E+F ++Q
Sbjct: 427 IFYGLRVKDTASWTSIICGLAMNG-KTSKALELFSKMKQ 464
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 124/278 (44%), Gaps = 24/278 (8%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I +A++G + + +F ++ + P+ T V A + +S + + +
Sbjct: 105 YNLIIKAFAKKGNYKRTLVLFSKL-REDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLV 163
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
T+ L V N++I+MY + + +F+ + +D+ISW+ +ISG A
Sbjct: 164 -TKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDA 222
Query: 129 LQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ +F M +G+ PD+ T ++ +SAC+ ++ G + + + P + ++
Sbjct: 223 INVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN--ALL 280
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFD--PIRQELVNK 241
DMY + G L A A EMP W ++ N + E+F+ PIR ++
Sbjct: 281 DMYCKCGCLSIARAVFEEMP-SKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVI-- 337
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279
+ M N + +R+++A + R M ++K
Sbjct: 338 -------WTAMINGYVQFNRFDEAVAL---FREMQIRK 365
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ A ++F + Y ++ ++ +I A G ++ L LFS + +G++PD+ T+ +
Sbjct: 85 GNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVF 144
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
A + G V + L + + T + T ++DMY + L + + EMP
Sbjct: 145 KAIGYLGEVSKAEKL-RGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMP 199
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 259 bits (662), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 197/290 (67%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++DV+SWT+M+ G A+ G+ +E++++F++M+ K EP+E TLV VLSAC+ AL G+
Sbjct: 74 EKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHK-IEPDEITLVGVLSACAQTGALDQGK 132
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
Y+H I +++++ ++ A+++MY KCG + +A+QVF + +++ +W+ +I GLAM+
Sbjct: 133 YIHLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMH 191
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G A+ LF M + + PDDVTFIAL+ ACSH GLVD+GL +F+AM ++I P+ +H
Sbjct: 192 GHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEH 251
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y CVVD+ RA +++A AFI MPI+A +W LL ACR + ++ + I + ++ +
Sbjct: 252 YGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELE 311
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G + ++SN +AG +W+ A K+R +++ G++K GCSWIE+N I
Sbjct: 312 PDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 361
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 119/210 (56%), Gaps = 7/210 (3%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
M K P+E T+V+++ AC+ + L G+ +HSY S L + V NA+++MY KC
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSY-SKELGLDENLSVNNAILDMYCKC 59
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
D+ A +VFN + KD++SW++++SGLA +G +++L LF M ++ + PD++T + ++
Sbjct: 60 DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
SAC+ G +DQG + + +EI +VDMY + G ++ A R M +
Sbjct: 120 SACAQTGALDQGKYIHLLIDK-FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNV 178
Query: 212 WSVWGALLNACRIHRNDE----MFDPIRQE 237
++ W A++ +H + E +FD + +
Sbjct: 179 FT-WNAMIGGLAMHGHGEDAISLFDQMEXD 207
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V +W MIGG A G E+A+S+F +ME K P++ T + +L ACS +
Sbjct: 173 MRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDK-LMPDDVTFIALLCACSHAGLVDE 231
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G + + ++ + V+++ + V A+ + NM + + W+T++
Sbjct: 232 GLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC 291
Query: 120 AMNG 123
G
Sbjct: 292 RSGG 295
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 188/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VVSW+ +IGG+A +G EEA+ +F+ M+ K + N T+ +VLS C+ ++AL
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHL 429
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R + + LVGN +INMY K G VF + KD+ISW+T+++G
Sbjct: 430 GREIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A++ F MI +G PD VTF+A++SACSH GLV +G LF M + + PQ
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 548
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAGLL+EA ++ MP+E VWGALLN+CR+H+N E+ + ++ N
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 608
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN +A + RWED+ K+R + GLKK G SWI+V ++
Sbjct: 609 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W +++ G+CEEA+ ++ M K + T V+ AC+ + + + V
Sbjct: 99 NLLLWNSILRANVAHGYCEEALEIYCRMRKLG-VSADGFTFPLVIRACALMGSRKLCRSV 157
Query: 65 HSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H ++ +++L V GN ++ MY K G + A +VF +A + +SW+T++SG A+
Sbjct: 158 HGHVVEMGFQWNLHV----GNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 213
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
N A ++F +M G+ P+ VT+ +L+S+ + G + + LF M
Sbjct: 214 NYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 262
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 134/340 (39%), Gaps = 80/340 (23%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++V+WT+++ +A G E + +F M EA V VLS ++A G+ +
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAV-VLSVSVDLAAFDEGKVI 293
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW------------ 112
H Y+ + V N++I +Y K G+V A +F + K+++SW
Sbjct: 294 HGYV-VKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 352
Query: 113 ---------------------------STVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
S VI G A G G +AL+LF M + V + V
Sbjct: 353 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 412
Query: 146 TFIALISACS-----------HGG----------LVDQGLI-------LFKAMSTVYEIV 177
T +++S C+ HG LV GLI FK + V+E +
Sbjct: 413 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKI 472
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACR----IHRND 228
+ +V YG GL E A +M E + + A+L+AC +
Sbjct: 473 ENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGR 532
Query: 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
E+FD + +E + + +A M + A ++A+K+
Sbjct: 533 ELFDKMIKEF--RVEPQMEHYACMVDLLGRAGLLQEASKV 570
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 188/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VVSW+ +IGG+A +G EEA+ +F+ M+ K + N T+ +VLS C+ ++AL
Sbjct: 371 MVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK-VKANSVTIASVLSVCAELAALHL 429
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R + + LVGN +INMY K G VF + KD+ISW+T+++G
Sbjct: 430 GREIHGHV-VRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYG 488
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A++ F MI +G PD VTF+A++SACSH GLV +G LF M + + PQ
Sbjct: 489 IHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQM 548
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAGLL+EA ++ MP+E VWGALLN+CR+H+N E+ + ++ N
Sbjct: 549 EHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFN 608
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN +A + RWED+ K+R + GLKK G SWI+V ++
Sbjct: 609 LNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVY 661
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 90/169 (53%), Gaps = 8/169 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W +++ G+CEEA+ ++ M K + T V+ AC+ + + + V
Sbjct: 99 NLLLWNSILRANVAHGYCEEALEIYCRMRKLG-VSADGFTFPLVIRACALMGSRKLCRSV 157
Query: 65 HSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H ++ +++L V GN ++ MY K G + A +VF +A + +SW+T++SG A+
Sbjct: 158 HGHVVEMGFQWNLHV----GNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYAL 213
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
N A ++F +M G+ P+ VT+ +L+S+ + G + + LF M
Sbjct: 214 NYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRM 262
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 141/357 (39%), Gaps = 84/357 (23%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++V+WT+++ +A G E + +F M EA V VLS ++A G+ +
Sbjct: 235 NLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAV-VLSVSVDLAAFDEGKVI 293
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW------------ 112
H Y+ + V N++I +Y K G+V A +F + K+++SW
Sbjct: 294 HGYV-VKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGW 352
Query: 113 ---------------------------STVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
S VI G A G G +AL+LF M + V + V
Sbjct: 353 CDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSV 412
Query: 146 TFIALISACS-----------HGG----------LVDQGLI-------LFKAMSTVYEIV 177
T +++S C+ HG LV GLI FK + V+E +
Sbjct: 413 TIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKI 472
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACR----IHRND 228
+ +V YG GL E A +M E + + A+L+AC +
Sbjct: 473 ENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGR 532
Query: 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
E+FD + +E + + +A M + A ++A+K+ ++ M + + C W
Sbjct: 533 ELFDKMIKEF--RVEPQMEHYACMVDLLGRAGLLQEASKV---VKSMPV-EPNACVW 583
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 187/285 (65%), Gaps = 3/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV W MIGGY +EA+++F EM+ P+E T+V+ LSACS + AL
Sbjct: 272 MPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGALDV 330
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI +++LS++ +G A+I+MY KCG + AIQVF L ++ ++W+ +ISGLA
Sbjct: 331 GIWIHHYIE-KHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 389
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ FS MI N V PD+VTF+ L+SAC HGGLV++G F MS+ + + P+
Sbjct: 390 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 449
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAGLLEEAE I+ MPIEA+ VWGAL ACRIH N M + +L+
Sbjct: 450 KHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQ 509
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
G + L++N + A+ W++A K R +R+ G+ +KT SW
Sbjct: 510 MDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGV-EKTPDSW 553
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 119/284 (41%), Gaps = 65/284 (22%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ SW I G+ + EAV +++ + + +P+ T + AC+ +S + G +
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 173
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVG---------------------------- 95
++ +D + V NAVI++ V CGD+
Sbjct: 174 LGHVLHLGFDSDI--FVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNL 231
Query: 96 -IAIQVFNMLAYKDMISWSTVISGLAMNGC------------------------------ 124
A ++F+ + K M+SW+T++ G A +G
Sbjct: 232 ESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHAN 291
Query: 125 -GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G++AL LF+ M + PD+VT ++ +SACS G +D G+ + + +E+
Sbjct: 292 RGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK-HELSLNVALG 350
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
++DMY + G + +A +E+P + W A+++ +H N
Sbjct: 351 TALIDMYAKCGKITKAIQVFQELPGRNSLT-WTAIISGLALHGN 393
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 195/292 (66%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D+VSW TMIGGY++ EA+++F EM+ ++PN T+ +L AC+S++AL
Sbjct: 413 MQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYN--SKPNSITMACILPACASLAALER 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H +I R S+ V NA+++MY+KCG +G+A +F+M+ KD++SW+ +I+G
Sbjct: 471 GQEIHGHI-LRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYG 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M +G+ PD+V+FI+++ ACSH GL+D+G F M I P++
Sbjct: 530 MHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKS 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ RAG L +A FI+ MPIE + ++WGALL CRI+ + ++ + + + +
Sbjct: 590 EHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFE 649
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L++N +A A++WE+ K+R+ I R GL+K GCSWIE+ +
Sbjct: 650 LEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKV 701
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 27/236 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSWT+MI GYA G + +V +F EMEK + P+ T+ +L AC+ L
Sbjct: 312 MGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EGISPDIFTITTILHACACTGLLEN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+YI + V NA+++MY KCG +G A VF+ + KD++SW+T+I G +
Sbjct: 371 GKDVHNYIKEN-KMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYS 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N +AL LF M N P+ +T ++ AC+ HG ++ G L +
Sbjct: 430 KNSLPNEALNLFVEMQYNSK-PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRH 488
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ +VDMY + G L A +P E + W ++ +H
Sbjct: 489 VANA------------LVDMYLKCGALGLARLLFDMIP-EKDLVSWTVMIAGYGMH 531
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 112/208 (53%), Gaps = 7/208 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E+ + +F++M + AT+V+V++ CS+ L G+
Sbjct: 214 RDVISWNSMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVAGCSNTGMLLLGRA 272
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H Y + + + N +++MY K G++ AIQVF + + ++SW+++I+G A G
Sbjct: 273 LHGY-AIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREG 331
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+++LF M G+ PD T ++ AC+ GL++ G + + E Q+ +
Sbjct: 332 LSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGK---DVHNYIKENKMQSDLF 388
Query: 184 A--CVVDMYGRAGLLEEAEAFIREMPIE 209
++DMY + G + +A + EM ++
Sbjct: 389 VSNALMDMYAKCGSMGDAHSVFSEMQVK 416
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 51/205 (24%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD---------- 93
T +VL C+ + ++ G+ +HS I + D+ V ++G+ ++ MYV CGD
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSN-DVEVDGVLGSKLVFMYVTCGDLREGRRIFDK 161
Query: 94 ----------------------------------VGI-----AIQVFNMLAYKDMISWST 114
+GI A ++F+ L +D+ISW++
Sbjct: 162 VANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNS 221
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+ISG NG + L LF M++ G+ D T +++++ CS+ G++ G L +
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRAL-HGYAIKA 280
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEA 199
+ C++DMY ++G L A
Sbjct: 281 SFGKELTLNNCLLDMYSKSGNLNSA 305
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 194/293 (66%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALS 59
MP++D+ +W +I GY + G +EA+++F+E++ TK A P++ TL++ LSAC+ + A+
Sbjct: 435 MPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMD 494
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI + + ++ + ++I+MY K GDV AI+VF+ + KD+ WS +I+GL
Sbjct: 495 IGEWIHGYIK-KERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGL 553
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G A++LF M V P+ VTF L+ ACSH GLVD+G LF M VY +VP+
Sbjct: 554 AMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPK 613
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
T+HY+C+VD+ GRAG LEEA FI MP+ SVWGALL AC IH N E+ + L+
Sbjct: 614 TKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLL 673
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A WE +++R ++R GLKK+TGCS IE++ ++
Sbjct: 674 EIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTV 726
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/317 (26%), Positives = 162/317 (51%), Gaps = 47/317 (14%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VSW +M+ G+ + G+ ++A+ +F+ M + + PN T+V+V+SAC+ L+ G+
Sbjct: 306 KDIVSWNSMVTGFVQGGYPDKALDLFERM-RNEGVHPNAVTMVSVMSACAKTMNLTLGRK 364
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA--- 120
V YI R ++ ++ V NA I+M+VKCG+V IA +F+ + +D++SW+T+I G A
Sbjct: 365 VCDYID-RNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMS 423
Query: 121 ----------------------------MNGCGRQALQLFSLMII--NGVFPDDVTFIAL 150
+G ++AL +F + + +G PD VT ++
Sbjct: 424 EHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLST 483
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC-VVDMYGRAGLLEEAEAFIREMPIE 209
+SAC+ G +D G + + E + ++ A ++DMY ++G +E+A +
Sbjct: 484 LSACAQLGAMDIGEWIHGYIKK--ERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-N 540
Query: 210 AEWSVWGALLNACRIH-RND---EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDA 265
+ VW A++ +H R + E+F +++ V V TF + + + ++
Sbjct: 541 KDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSV---TFTNLLCACSHSGLVDEG 597
Query: 266 NKIRDEIRRM-GLKKKT 281
++ DE+ R+ G+ KT
Sbjct: 598 KRLFDEMERVYGVVPKT 614
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 5/158 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ SW +I A ++V VF M PN+ T ++ A +
Sbjct: 199 IPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLV 258
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDMISWSTVIS 117
G+ VH I T + V V N++I+ Y CG + +A VF M+ KD++SW+++++
Sbjct: 259 GKAVHGMAIKTSFGDDV--FVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVT 316
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
G G +AL LF M GV P+ VT ++++SAC+
Sbjct: 317 GFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACA 354
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 196/290 (67%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++DV+SWT+M+ G A+ G+ +EA+++FQ+M+ K E +E TLV VLSAC+ AL G+
Sbjct: 276 EKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNK-IELDEITLVGVLSACAQTGALDQGK 334
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
Y+H I +++++ ++ A+++MY KCG + +A+QVF + +++ +W+ +I GLAM+
Sbjct: 335 YIHLLID-KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMH 393
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G A+ LF M + + PDDVTFIAL+ ACSH GLVD+GL +F+AM ++I P+ +H
Sbjct: 394 GHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEH 453
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y CVVD+ RA +++A AFI MPI+A +W LL ACR + ++ + I + ++ +
Sbjct: 454 YGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELE 513
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G + ++SN +AG +W+ A K+R +++ G++K GCSWIE+N I
Sbjct: 514 PDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 563
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 135/238 (56%), Gaps = 7/238 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV+W MI + +G E+A + EM K P+E T+V+++ AC+ + L G++
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HSY S L + V NA+++MY KC D+ A +VFN + KD++SW++++SGLA +G
Sbjct: 235 LHSY-SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSG 293
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++AL LF M +N + D++T + ++SAC+ G +DQG + + +EI
Sbjct: 294 YFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDK-FEINCDLVLE 352
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQE 237
+VDMY + G ++ A R M + ++ W AL+ +H + E +FD + +
Sbjct: 353 TALVDMYAKCGSIDLALQVFRRMRVRNVFT-WNALIGGLAMHGHGEDAISLFDQMEHD 409
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D TMI GYA EAVS++ M + + + T VL+AC+ + A+
Sbjct: 71 MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVE-RGVPVDNYTYPFVLAACARLGAVKL 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + + V NA+I Y CG G A VF+ +D+++W+ +I+
Sbjct: 130 GRRFHCEV-LKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHL 188
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A L M ++ + PD+VT ++L+ AC+ G +++G L + S +
Sbjct: 189 NKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFL-HSYSKELGLDEN 247
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++DMY + +E A+ + E + W ++L+
Sbjct: 248 LRVNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSG 288
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V +W +IGG A G E+A+S+F +ME K P++ T + +L ACS +
Sbjct: 375 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDK-LMPDDVTFIALLCACSHAGLVDE 433
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G + + ++ + V+++ + V A+ + NM + + W+T++
Sbjct: 434 GLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC 493
Query: 120 AMNG-------CGRQALQL 131
G GR+ ++L
Sbjct: 494 RSGGHFDLAEKIGRRVIEL 512
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY +EA+ +F+EM+ T + +P+E T+V+VL+AC+ + AL
Sbjct: 223 MPERDHVSWTAMIDGYLRLNCYKEALMLFREMQ-TSKIKPDEFTMVSVLTACAQLGALEL 281
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + + VGNA+I+MY KCG+V +A+ +FN L +D +W+ ++ GLA
Sbjct: 282 GEWIRTYID-KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLA 340
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGCG +AL +FS M+ V PD+VT++ ++SAC+H G+VD+G F +M+ + I P
Sbjct: 341 INGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNI 400
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ G+AG L+EA I+ MP++ VWGALL ACRIH++ EM + ++++
Sbjct: 401 AHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILE 460
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L N +A ++W+ ++R + G+KK GCS IE+N
Sbjct: 461 LEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMN 509
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 55/274 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ V SW M GY+ + VS++ EM + + +P+ T + + AL
Sbjct: 74 IPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLE-RNVKPDCYTYPFLFKGFTRSVALQL 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--------------- 105
G+ +H ++ +Y L + NA+INMY CG + +A +F+M
Sbjct: 133 GRELHCHV-VKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYN 191
Query: 106 --YKDMISWSTVISGLAMNG-------------------------------CGRQALQLF 132
KD+ISW+ +++G G C ++AL LF
Sbjct: 192 RIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLF 251
Query: 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192
M + + PD+ T +++++AC+ G ++ G + + ++ T ++DMY +
Sbjct: 252 REMQTSKIKPDEFTMVSVLTACAQLGALELGEWI-RTYIDKNKVKNDTFVGNALIDMYFK 310
Query: 193 AGLLEEAEAFIREMPIEAEWS----VWGALLNAC 222
G +E A + +P +++ V G +N C
Sbjct: 311 CGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGC 344
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
GD+ A Q+F+ + + SW+ + G + C + + L+ M+ V PD T+ L
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+ + G L Y + + +++MY GL++ A I +M +++
Sbjct: 122 KGFTRSVALQLGREL-HCHVVKYGLDSNVFAHNALINMYSLCGLIDMARG-IFDMSCKSD 179
Query: 212 WSVWGALLNA 221
W A+++
Sbjct: 180 VVTWNAMISG 189
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 181/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW T+I GY + G EA+ V+ M+K + +P + T V+VL A S + AL
Sbjct: 333 MPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQ 392
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ +S + L++ VG VI++Y KCG + A+ +F + W+ VISG+
Sbjct: 393 GTRMHA-LSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVG 451
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LFS M G+ PD VTF++L++ACSH GLVDQG F M T Y I P
Sbjct: 452 VHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIA 511
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDM+GRAG L++A FIR MPI+ + ++WGALL ACRIH N EM Q L
Sbjct: 512 KHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFE 571
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + LMSN +A +W+ +++R +RR L+K G S IEV S+
Sbjct: 572 LDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSV 623
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 132/251 (52%), Gaps = 10/251 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+V+W ++I G+ + G AV +F M + P+ TL+++ SA + +
Sbjct: 231 MSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSG-VSPDVLTLLSLASAIAQCGDICG 289
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y+ R V +++ GNA+++MY K + A ++F+ + +D +SW+T+I+G
Sbjct: 290 GRSVHCYM-VRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGY 348
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +A+ ++ M + G+ P TF++++ A SH G + QG + A+S +
Sbjct: 349 MQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRM-HALSIKTGLNL 407
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
CV+D+Y + G L+EA + P + W A+++ +H + +F +
Sbjct: 408 DVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRST-GPWNAVISGVGVHGHGAKALSLFSQM 466
Query: 235 RQELVNKKGVS 245
+QE ++ V+
Sbjct: 467 QQEGISPDHVT 477
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 3/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV +W M+ G EAV +F M A + T+ +VL C + +
Sbjct: 130 MRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG-DAVTVSSVLPMCVLLGDRAL 188
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y + ++ L V NA+I++Y K G + +VF+ ++ +D+++W+++ISG
Sbjct: 189 ALAMHLY-AVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHE 247
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A+++F M +GV PD +T ++L SA + G + G + M V
Sbjct: 248 QGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDI 307
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + +E A+ MP+ S W L+
Sbjct: 308 IAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS-WNTLITG 347
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A+++ Y++ G V A + F+ + ++D+ +W+ ++SGL N +A+ LF M++ GV
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAG 168
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEE 198
D VT +++ C G D+ L L + V + + + C ++D+YG+ G+LEE
Sbjct: 169 DAVTVSSVLPMCVLLG--DRALALAMHLYAVKHGL-DDELFVCNAMIDVYGKLGMLEE 223
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ VSW+ MIGGY +EA+ +F+ M+ + +P+ T++ VL ACS ++AL
Sbjct: 233 MGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSG-IDPDLTTMLGVLPACSHLAALQH 291
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H Y+ R + L+ NA+I+MY KCG + A +VFN + D++SW+ +I G
Sbjct: 292 GFCSHGYLIVR-GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 350
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LF ++ G+ PDD+TFI L+S+CSH GLV +G + F AMS + IVP+
Sbjct: 351 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 410
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H C+VD+ GRAGL++EA FIR MP E + +W ALL+ACRIH+N E+ + + +++ +
Sbjct: 411 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQS 470
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S G F L+SN ++ A RW+DA IR + GLKK GCSWIE+N
Sbjct: 471 LGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 519
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 52/230 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W MI G + G C++AV + +M++ PN +T+V VL C +
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTCQCL----- 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+Y + ++F+++ ++ +SWS +I G
Sbjct: 224 --------------------------LYAR--------KIFDVMGVRNEVSWSAMIGGYV 249
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
+ C ++AL +F +M ++G+ PD T + ++ ACSH G G ++ + +T
Sbjct: 250 ASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT--- 306
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + A M + W A++ IH
Sbjct: 307 ---DTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 352
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P V+ W +I YA G + A+ ++ M PN+ T VL ACS + A+
Sbjct: 69 IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS+ + + L V A+++ Y KCG + A ++F+ ++++D+++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
+ G A+QL M G+ P+ T + ++ C
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+++L AC +L+ + +H + + S+++ + + +Y+ C V +A ++F+ +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQVVLARRLFDEIP 70
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
+I W+ +I A NG A+ L+ M+ GV P+ T+ ++ ACS G L + +
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS-GLLAIEDGV 129
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++ + +VD Y + G+L EA+ M + W A++ C ++
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLY 188
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 186/287 (64%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW T+IGGY +EA+ +FQEM ++ E PN+ TL++VL AC+ + A+ G++
Sbjct: 264 KDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGEC-PNDVTLLSVLPACAHLGAIDIGRW 322
Query: 64 VHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI + ++ + ++I+MY KCGD+ A QVFN + Y+ + SW+ +I G AM+
Sbjct: 323 IHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMH 382
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A LFS M N V PDD+TF+ L+SACSH GL+D G +FK+M+ Y + P+ +H
Sbjct: 383 GRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEH 442
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EAE I MP+E + +W +LL AC+ H N E+ + Q+L+ +
Sbjct: 443 YGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIE 502
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G++ L+SN +A A RWED ++R + G+KK GCS IEV+
Sbjct: 503 PENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD 549
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 135/237 (56%), Gaps = 7/237 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RDVVSW MI GY E G EEA+ +F+EM +T P+E TLV+V+SAC+ ++
Sbjct: 156 ITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN-VRPDEGTLVSVVSACAQSGSIEL 214
Query: 61 GQYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ VHS++ + S S + NA+I++Y KCGDV A +F L+ KD++SW+T+I
Sbjct: 215 GRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIG 274
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-I 176
G ++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + +
Sbjct: 275 GYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGV 334
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+T ++DMY + G +E A M + S W A++ +H R + FD
Sbjct: 335 TNETSLRTSLIDMYAKCGDIEAAHQVFNSM-LYRSLSSWNAMIFGFAMHGRANAAFD 390
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 33/190 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM+ G+A A+ ++ M PN + +L +C+ A G+ +
Sbjct: 28 NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL-PNSYSFPFLLKSCAKSKAFEEGRQI 86
Query: 65 HSYISTRYDLSVSNLVGNAVINMY---------------------VKC----------GD 93
H+ + + + V ++I+MY V C GD
Sbjct: 87 HAQV-LKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGD 145
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
A +VF+ + +D++SW+ +I+G NG +AL+LF M+ V PD+ T ++++SA
Sbjct: 146 FRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSA 205
Query: 154 CSHGGLVDQG 163
C+ G ++ G
Sbjct: 206 CAQSGSIELG 215
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 192/291 (65%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K+DV+SW T+IGG+ +EA+ +FQEM ++ E+ PN+ T+++VL AC+ + A+
Sbjct: 258 LAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGES-PNDVTMLSVLPACAHLGAIDI 316
Query: 61 GQYVHSYISTRYD--LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+++H YI+ R + S+L+ ++I+MY KCGD+ A QVF+ + + + SW+ +I G
Sbjct: 317 GRWIHVYINKRLKGVTNASSLL-TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFG 375
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G A LFS M NG+ PDD+TF+ L+SACSH G++D G +F++MS Y+I P
Sbjct: 376 FAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITP 435
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C++D+ G GL +EA+ IR MP+E + +W +LL AC++H N E+ + Q L
Sbjct: 436 KLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNL 495
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + G++ L+SN +A A RW+ KIR + G+KK GCS IE++
Sbjct: 496 IKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 144/258 (55%), Gaps = 9/258 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW MI GY E +EA+ ++++M KT +P+E+T+V V+SAC+ ++ G+
Sbjct: 160 KDVVSWNAMISGYVETCNFKEALELYKDMMKT-NVKPDESTMVTVVSACAQSGSIELGRQ 218
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HS+I S +V N +I++Y KCG+V A +F LA KD+ISW+T+I G
Sbjct: 219 LHSWIEDHGFGSNIKIV-NVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMN 277
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQTQH 182
++AL LF M+ +G P+DVT ++++ AC+H G +D G + ++ + + +
Sbjct: 278 LYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSL 337
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQEL 238
++DMY + G +E A+ M + S W A++ +H ++F +R+
Sbjct: 338 LTSLIDMYAKCGDIEAAKQVFDSM-LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNG 396
Query: 239 VNKKGVS-VGTFALMSNT 255
++ ++ VG + S++
Sbjct: 397 IDPDDITFVGLLSACSHS 414
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN + +L +C+ AL GQ +
Sbjct: 29 NLLIWNTMFRGHALNSDSVTALKLYVCM-ISLGLLPNSYSFPFLLKSCAKSKALIEGQQI 87
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-------------------- 103
H ++ YDL + V ++I+MY + G + A +VF+
Sbjct: 88 HGHVLKLGYDLDM--YVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRG 145
Query: 104 -----------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
++ KD++SW+ +ISG ++AL+L+ M+ V PD+ T + ++S
Sbjct: 146 YINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVS 205
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
AC+ G ++ G L + + + ++D+Y + G +E A
Sbjct: 206 ACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETA 251
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
AI +F + +++ W+T+ G A+N AL+L+ MI G+ P+ +F L+ +C+
Sbjct: 18 AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77
Query: 157 G-GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
L++ I + Y++ ++ MY + G LE+A
Sbjct: 78 SKALIEGQQIHGHVLKLGYDLDMYVN--TSLISMYAQNGRLEDAH 120
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 193/298 (64%), Gaps = 10/298 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V +WT M+ G+A+ G C+ A+S+F +M + E ++ LV LSAC+ + L+
Sbjct: 222 MPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTL 280
Query: 61 GQYVHSYISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+++H Y+ + L V + NA+I+MY CG + +A +VF + ++ +SWS++I+
Sbjct: 281 GKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIIT 340
Query: 118 GLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A GCG +A+++F LM+ +G V PD++TFI ++ACSH GL+ G+ LF++M +
Sbjct: 341 GFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTF 400
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
++PQ +HY C+VD+ RAGLL EA + I MP++ +VWGALL+ CR+H+NDE+ +
Sbjct: 401 GVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHV 460
Query: 235 RQEL---VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L ++ + G F L++N +A RW+D +R + +G+KK +G SWIE+N
Sbjct: 461 AKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS-- 66
W +I G+ ++++ +F+ M E N T +LSAC G+ +H
Sbjct: 93 WNQIIKGHTRSKTSKKSIELFKRM-TLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRV 151
Query: 67 ---------YIST--------------------RY---DLSVSNLVG-NAVINMYVKCGD 93
Y+ T RY ++ SN+VG N+++ YV+ GD
Sbjct: 152 LVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGD 211
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
A +VF+ + +++ +W+ +++G A NG + AL LF M GV D V +A +SA
Sbjct: 212 FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSA 271
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD-------MYGRAGLLEEAEAFIREM 206
C+ G L L K + E +++H +V MY G+++ A E+
Sbjct: 272 CAELG----DLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEI 327
Query: 207 P 207
P
Sbjct: 328 P 328
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 20/251 (7%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 95
+ + + + +VL +C S L+ +H+ I S N + N ++++Y+ G +G
Sbjct: 21 RSSRVRQQFIFSVLKSCVSFRNLA---KIHAQIVVS-GFSQKNYILNHLLSLYISFGSLG 76
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +VF + W+ +I G + +++++LF M + GV + T+ L+SAC
Sbjct: 77 SAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV 136
Query: 156 HGGLVDQG-LILFKAMSTVY--EIVPQTQHYACVVDMYGRAG-----LLEEAEAFIREMP 207
L +G I + + Y + +T ++++Y G L+ A EMP
Sbjct: 137 RSRLFREGEQIHGRVLVNGYWSNLYVRTN----LINLYANGGDGGDFDLKRARYLFDEMP 192
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267
++ W +LL A + R D FD R+ +V T+ +M FA + + A
Sbjct: 193 -DSNVVGWNSLL-AGYVRRGD--FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALS 248
Query: 268 IRDEIRRMGLK 278
+ D++RR G++
Sbjct: 249 LFDQMRRAGVE 259
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 192/292 (65%), Gaps = 2/292 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSW MI GY+ G E + +F++M+ +P+ TLV+VLSAC+ + ALS G
Sbjct: 202 PVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQG 260
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH+YI + +S+ V A+++MY KCG + A++VFN KD+ +W+++ISGL+
Sbjct: 261 EWVHAYID-KNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLST 319
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G+ ALQ+FS M++ G P++VTF+ ++SACS GL+D+G +F M V+ I P +
Sbjct: 320 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 379
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C+VD+ GR GLLEEAE +++MP + VW +LL ACR H N E+ + + Q+L+
Sbjct: 380 HYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 439
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+F +SN +A RW+D ++R ++R G++K GCS IEV+ +++
Sbjct: 440 SPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVY 491
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 120/276 (43%), Gaps = 46/276 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + W T+I YA E A+++F +M P++ T L +C S S +
Sbjct: 68 IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVEE 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + L + N +I++Y CG + A + + + +D++SW+ ++S A
Sbjct: 127 GRQIHGHV-LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYA 185
Query: 121 MNG------------------------------CGR--QALQLFSLMIINGVFPDDVTFI 148
G GR + L LF M GV PD+ T +
Sbjct: 186 ERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLV 245
Query: 149 ALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFI 203
+++SAC+H G + QG + K ++ V +VDMY + G +E+A E F
Sbjct: 246 SVLSACAHVGALSQGEWVHAYIDKNGISIDGFVA-----TALVDMYSKCGSIEKALEVF- 299
Query: 204 REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ + S W ++++ H + + I E++
Sbjct: 300 -NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML 334
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
+ S L+ + N + + + A +F+ + + W+T+I A + AL +F
Sbjct: 40 FAASRLIASVSTNSHAQA--IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFH 97
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVY--EIVPQTQHYACVVDMY 190
M+ V PD TF + +C V++G I + T ++ Q ++ +Y
Sbjct: 98 QMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQN----TLIHLY 153
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G +E+A + M +E + W ALL+A
Sbjct: 154 ASCGCIEDARHLLDRM-LERDVVSWNALLSA 183
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 256 bits (654), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 115/298 (38%), Positives = 193/298 (64%), Gaps = 10/298 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V +WT M+ G+A+ G C+ A+S+F +M + E ++ LV LSAC+ + L+
Sbjct: 222 MPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTL 280
Query: 61 GQYVHSYISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+++H Y+ + L V + NA+I+MY CG + +A ++F + ++ +SWS++I+
Sbjct: 281 GKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIIT 340
Query: 118 GLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A GCG +A+++F LM+ +G V PD++TFI ++ACSH GL+ G+ LF++M +
Sbjct: 341 GFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTF 400
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
++PQ +HY C+VD+ RAGLL EA + I MP++ +VWGALL+ CR+H+NDE+ +
Sbjct: 401 GVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHKNDEIVSHV 460
Query: 235 RQEL---VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L ++ + G F L++N +A RW+D +R + +G+KK +G SWIE+N
Sbjct: 461 AKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGRSWIEIN 518
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 47/241 (19%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS-- 66
W +I G+ ++++ +F+ M E N T +LSAC G+ +H
Sbjct: 93 WNQIIKGHTRSKTSKKSIELFKRM-TLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRV 151
Query: 67 ---------YISTR-------------YDLSV----------SNLVG-NAVINMYVKCGD 93
Y+ T +DL SN+VG N+++ YV+ GD
Sbjct: 152 LVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGD 211
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
A +VF+ + +++ +W+ +++G A NG + AL LF M GV D V +A +SA
Sbjct: 212 FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSA 271
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD-------MYGRAGLLEEAEAFIREM 206
C+ G L L K + E +++H +V MY G ++ A E+
Sbjct: 272 CAELG----DLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEI 327
Query: 207 P 207
P
Sbjct: 328 P 328
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 114/251 (45%), Gaps = 20/251 (7%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 95
+ + + + +VL +C S L+ H+ I S N + N ++++Y+ G +G
Sbjct: 21 RSSRVRQQFIFSVLKSCVSFRNLA---KTHAQIVVS-GFSQKNYILNHLLSLYISFGSLG 76
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +VF + W+ +I G + +++++LF M + GV + T+ L+SAC
Sbjct: 77 SAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV 136
Query: 156 HGGLVDQG-LILFKAMSTVY--EIVPQTQHYACVVDMYGRAG-----LLEEAEAFIREMP 207
L +G I + + Y + +T ++++Y G L+ A EMP
Sbjct: 137 RSRLFREGEQIHGRVLVNGYWSNLYVRTN----LINLYANGGDGGDFDLKRALYLFDEMP 192
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267
++ W +LL A + R D FD R+ +V T+ +M FA + + A
Sbjct: 193 -DSNVVGWNSLL-AGYVRRGD--FDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALS 248
Query: 268 IRDEIRRMGLK 278
+ D++RR G++
Sbjct: 249 LFDQMRRAGVE 259
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 192/292 (65%), Gaps = 2/292 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSW MI GY+ G E + +F++M+ +P+ TLV+VLSAC+ + ALS G
Sbjct: 232 PVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQG 290
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH+YI + +S+ V A+++MY KCG + A++VFN KD+ +W+++ISGL+
Sbjct: 291 EWVHAYID-KNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLST 349
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G+ ALQ+FS M++ G P++VTF+ ++SACS GL+D+G +F M V+ I P +
Sbjct: 350 HGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIE 409
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C+VD+ GR GLLEEAE +++MP + VW +LL ACR H N E+ + + Q+L+
Sbjct: 410 HYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLEL 469
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+F +SN +A RW+D ++R ++R G++K GCS IEV+ +++
Sbjct: 470 SPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVY 521
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 108/244 (44%), Gaps = 53/244 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW ++ YAERG E A +F EM +
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELACHLFDEMTE-------------------------- 202
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V S+ N +I+ YV G + A +VF K+++SW+ +I+G +
Sbjct: 203 -RNVESW--------------NFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYS 247
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
G + L LF M GV PD+ T ++++SAC+H G + QG + K ++
Sbjct: 248 HAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGF 307
Query: 177 VPQTQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
V +VDMY + G +E+A E F + + S W ++++ H + + I
Sbjct: 308 VA-----TALVDMYSKCGSIEKALEVF--NSCLRKDISTWNSIISGLSTHGSGQHALQIF 360
Query: 236 QELV 239
E++
Sbjct: 361 SEML 364
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 108/250 (43%), Gaps = 33/250 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + W T+I YA E A+++F +M P++ T L +C S S +
Sbjct: 68 IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHAS-VLPDKYTFTFALKSCGSFSGVEE 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + L + N +I++Y CG + A + + + +D++SW+ ++S A
Sbjct: 127 GRQIHGHV-LKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYA 185
Query: 121 MNGCGRQALQLFSLM----------IING------------VFPDD-----VTFIALISA 153
G A LF M +I+G VF + V++ A+I+
Sbjct: 186 ERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITG 245
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE---AFIREMPIEA 210
SH G + L+LF+ M + P V+ G L + E A+I + I
Sbjct: 246 YSHAGRFSEVLVLFEDMQHA-GVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISI 304
Query: 211 EWSVWGALLN 220
+ V AL++
Sbjct: 305 DGFVATALVD 314
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 86/201 (42%), Gaps = 13/201 (6%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
+ S L+ + N + + + A +F+ + + W+T+I A + AL +F
Sbjct: 40 FAASRLIASVSTNSHAQA--IPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFH 97
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVY--EIVPQTQHYACVVDMY 190
M+ V PD TF + +C V++G I + T ++ Q ++ +Y
Sbjct: 98 QMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNT----LIHLY 153
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFA 250
G +E+A + M +E + W ALL+A E+ + E+ + +V ++
Sbjct: 154 ASCGCIEDARHLLDRM-LERDVVSWNALLSAYAERGLMELACHLFDEMTER---NVESWN 209
Query: 251 LMSNTFAGADRWEDANKIRDE 271
M + + G E+A ++ E
Sbjct: 210 FMISGYVGVGLLEEARRVFGE 230
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 189/292 (64%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D++SW TMIGGY++ EA+S+F +M E +P+ TL +L AC+S+++L
Sbjct: 160 MPVKDIISWNTMIGGYSKNSLPNEALSLFGDM--VLEMKPDGTTLACILPACASLASLDR 217
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I R V NA+++MYVKCG +A +F+M+ KD+I+W+ +I+G
Sbjct: 218 GKEVHGHI-LRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYG 276
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ F+ M G+ PD+V+FI+++ ACSH GL+D+G F M + P+
Sbjct: 277 MHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKL 336
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R+G L A FI+ MPIE + ++WGALL+ CRIH + ++ + + + +
Sbjct: 337 EHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFE 396
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L++NT+A A++WE+ K+R +I R GLKK GCSWIEV +
Sbjct: 397 LEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKV 448
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 10/276 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VV+WT++I YA G +EA+ +F EM++ + P+ T+ VL AC+ +L
Sbjct: 59 MSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDR-EGVSPDIFTITTVLHACACNGSLEN 117
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+YI D+ + V NA+++MY KCG + A VF + KD+ISW+T+I G +
Sbjct: 118 GKDVHNYIREN-DMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYS 176
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL LF M++ + PD T ++ AC+ +D+G + +
Sbjct: 177 KNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHI-LRNGFFSDQ 234
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH--RNDEM--FDPIRQ 236
Q +VDMY + G+ A +P + + W ++ +H N+ + F+ +RQ
Sbjct: 235 QVANALVDMYVKCGVPVLARLLFDMIPTK-DLITWTVMIAGYGMHGFGNNAITTFNEMRQ 293
Query: 237 ELVNKKGVS-VGTFALMSNTFAGADRWEDANKIRDE 271
+ VS + S++ + W N ++DE
Sbjct: 294 AGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDE 329
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 92/167 (55%), Gaps = 6/167 (3%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
+V++L AC++ +S G+ VH + + N +++MY KCG + AI VF+++
Sbjct: 1 MVSILQACANCGDVSLGRAVHGS-GVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLM 59
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
+ + +++W+++I+ A G +A++LF M GV PD T ++ AC+ G ++ G
Sbjct: 60 SVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119
Query: 165 ILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
+ + E Q+ + C ++DMY + G +E+A + EMP++
Sbjct: 120 ---DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK 163
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 190/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVV W +IGG+ + +EA+++F EM+ + A P++ T+VN LSACS + AL
Sbjct: 348 MPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVA-PDKITVVNCLSACSQLGALDV 406
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H Y+ +++L+++ +G A+++MY KCG++ AIQVF + ++ ++W+ +I GLA
Sbjct: 407 GIWMHHYVD-KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ FS MI G+ PD++TFI ++SAC HGGLVDQG F M++ Y I P+
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG LEEAE IR MP E + VWGAL RIH N M + +L+
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L++N + A+ WE A K+R + G++K GCS IE+N ++
Sbjct: 586 LDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY 638
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 35/253 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW ++I GY G +EA ++ +M + P+E T++ V+SA + + L+ G+
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELN-VMPDEVTMIGVVSASAQLENLALGRK 277
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDV----------------------------G 95
+H I L+++ + NA+++MY+KC ++ G
Sbjct: 278 LHQSIE-EMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFG 336
Query: 96 I---AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A+++FN + KD++ W+ +I G ++AL LF M + V PD +T + +S
Sbjct: 337 LLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLS 396
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G +D G+ + + + + +VDMY + G +++A EMP
Sbjct: 397 ACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSL 455
Query: 213 SVWGALLNACRIH 225
+ W A++ +H
Sbjct: 456 T-WTAIICGLALH 467
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 34/243 (13%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHS 66
SW I GY E AV +++ M + A P+ T + C+ S + + + +
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I +D + V NA+I++ V CG++ A ++F+ +D++SW+++I+G G
Sbjct: 181 VIQLGFDSDL--FVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLAD 238
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLIL--------- 166
+A L+ M V PD+VT I ++SA + H + + GL L
Sbjct: 239 EAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALM 298
Query: 167 --------FKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
+A ++E + + + +V Y + GLLE A EMP E + +W
Sbjct: 299 DMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP-EKDVVLWN 357
Query: 217 ALL 219
AL+
Sbjct: 358 ALI 360
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 184/292 (63%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP R++VSWTTMI GY++ G ++A+S+F EM K PN T+++VL AC+ +S L
Sbjct: 263 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 322
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVIS 117
G+ +H ++ R L+ + V A+ MY KCG + A F+ L K++I+W+T+I+
Sbjct: 323 RGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMIT 381
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G G QA+ F MI G+ PDD+TF L+S CSH GLVD GL F MST Y I
Sbjct: 382 AYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSIN 441
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYACV D+ GRAG L EA + EMP+ A S+WG+LL ACR HRN EM + ++
Sbjct: 442 PRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARK 501
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L + + G + L+SN +A A RW++ +K+R ++ G KK GCSWIE+N
Sbjct: 502 LFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 553
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +MI YA GF E V+ + M + T VL + + ++ G+ VH I
Sbjct: 139 FNSMIRAYARYGFAERTVATYFSMHSWGFTG-DYFTFPFVLKSSVELLSVWMGKCVHGLI 197
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R L V ++I +Y KCG++ A +VF+ + +D+ SW+ +++G +GC A
Sbjct: 198 -LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAA 256
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
L +F M + V++ +IS S GL Q L LF M
Sbjct: 257 LAIFERMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEM 294
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 81/196 (41%), Gaps = 25/196 (12%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
+ P + V + ++ L G VH+++ R L + LVG+ ++ Y GD+
Sbjct: 63 SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLR-GLQPTALVGSKMVAFYASSGDI 121
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF------- 147
++ VFN + + ++++I A G + + + M G D TF
Sbjct: 122 DSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSS 181
Query: 148 IALISA----CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
+ L+S C HG ++ GL ++T ++ +YG+ G + +A
Sbjct: 182 VELLSVWMGKCVHGLILRIGLQFDLYVAT------------SLIILYGKCGEINDAGKVF 229
Query: 204 REMPIEAEWSVWGALL 219
M I + S W ALL
Sbjct: 230 DNMTIR-DVSSWNALL 244
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 190/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVV W +IGG+ + +EA+++F EM+ + A P++ T+VN LSACS + AL
Sbjct: 348 MPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVA-PDKITVVNCLSACSQLGALDV 406
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H Y+ +++L+++ +G A+++MY KCG++ AIQVF + ++ ++W+ +I GLA
Sbjct: 407 GIWMHHYVD-KHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ FS MI G+ PD++TFI ++SAC HGGLVDQG F M++ Y I P+
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG LEEAE IR MP E + VWGAL RIH N M + +L+
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLE 585
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L++N + A+ WE A K+R + G++K GCS IE+N ++
Sbjct: 586 LDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVY 638
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 123/253 (48%), Gaps = 35/253 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW ++I GY G +EA ++ +M + P+E T++ V+SA + + L+ G+
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELN-VMPDEVTMIGVVSASAQLENLALGRK 277
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDV----------------------------G 95
+H I L+++ + NA+++MY+KC ++ G
Sbjct: 278 LHQSIE-EMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFG 336
Query: 96 I---AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A+++FN + KD++ W+ +I G ++AL LF M + V PD +T + +S
Sbjct: 337 LLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLS 396
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G +D G+ + + + + +VDMY + G +++A EMP
Sbjct: 397 ACSQLGALDVGIWMHHYVDK-HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSL 455
Query: 213 SVWGALLNACRIH 225
+ W A++ +H
Sbjct: 456 T-WTAIICGLALH 467
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQY 63
+V SW I GY E AV +++ M + A P+ T + C+ S + + +
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ I +D + V NA+I++ V CG++ A ++F+ +D++SW+++I+G G
Sbjct: 178 LGHVIQLGFDSDL--FVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCG 235
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLIL------ 166
+A L+ M V PD+VT I ++SA + H + + GL L
Sbjct: 236 LADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLAN 295
Query: 167 -----------FKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
+A ++E + + + +V Y + GLLE A EMP E +
Sbjct: 296 ALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP-EKDVV 354
Query: 214 VWGALL 219
+W AL+
Sbjct: 355 LWNALI 360
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/292 (44%), Positives = 184/292 (63%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP R++VSWTTMI GY++ G ++A+S+F EM K PN T+++VL AC+ +S L
Sbjct: 226 MPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLE 285
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVIS 117
G+ +H ++ R L+ + V A+ MY KCG + A F+ L K++I+W+T+I+
Sbjct: 286 RGRQIHE-LACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMIT 344
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G G QA+ F MI G+ PDD+TF L+S CSH GLVD GL F MST Y I
Sbjct: 345 AYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSIN 404
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYACV D+ GRAG L EA + EMP+ A S+WG+LL ACR HRN EM + ++
Sbjct: 405 PRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARK 464
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L + + G + L+SN +A A RW++ +K+R ++ G KK GCSWIE+N
Sbjct: 465 LFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEIN 516
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
+ M+ YA G + +VSVF + + T VL + + ++ G+ VH I
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIG-------DYFTFPFVLKSSVELLSVWMGKCVHGLI- 160
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R L V ++I +Y KCG++ A +VF+ + +D+ SW+ +++G +GC AL
Sbjct: 161 LRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAAL 220
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+F M + V++ +IS S GL Q L LF M
Sbjct: 221 AIFERMPWRNI----VSWTTMISGYSQSGLAQQALSLFDEM 257
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII--NG 139
NA++ Y K G + A+ +F + +++++SW+T+ISG + +G +QAL LF M+ +G
Sbjct: 204 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 263
Query: 140 VFPDDVTFIALISACSHGGLVDQG 163
V P+ VT ++++ AC+ +++G
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERG 287
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 111/276 (40%), Gaps = 43/276 (15%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
+ P + V + ++ L G VH+++ R L + LVG+ ++ Y GD+
Sbjct: 63 SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLR-GLQPTALVGSKMVAFYASSGDI 121
Query: 95 GIAIQVFNMLA--------YKDMISWSTVISGLAMNGC-GRQALQL-----FSLMIING- 139
++ VFN + K + +V G ++G R LQ SL+I+ G
Sbjct: 122 DSSVSVFNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGK 181
Query: 140 ---------VFP-----DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
VF D ++ AL++ + G +D L +F+ M IV T
Sbjct: 182 CGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPW-RNIVSWTT---- 236
Query: 186 VVDMYGRAGLLEEAEAFIREM-----PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
++ Y ++GL ++A + EM + W ++L AC E I EL
Sbjct: 237 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI-HELAC 295
Query: 241 KKGVSVGTFALMSNT--FAGADRWEDANKIRDEIRR 274
+ G++ L++ T +A DA D++ R
Sbjct: 296 RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNR 331
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/270 (43%), Positives = 181/270 (67%), Gaps = 1/270 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD SW+ M+ GY++ G C EA+ +F EM + PNEA LV+ +SAC+ + AL
Sbjct: 233 MPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEE 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI + L ++ +G +++MY KCG + A VFN+++ +++ SW+++I+GLA
Sbjct: 293 GRWLHSYIKEK-KLRINVTLGTVLLDMYGKCGSILDAAGVFNLMSERNVNSWNSMIAGLA 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGCG++AL LF M G P+ +TFIAL++ CSH GL+ +G LF M+ VY I PQ
Sbjct: 352 LNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEGRWLFSMMTQVYGIKPQL 411
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL++EA F+ +MP++ +WGAL+ ACRIH E+ + + + L++
Sbjct: 412 KHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACRIHGQVELGEELGKRLID 471
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ G +AL+ N FA A RW+D +RD
Sbjct: 472 LEPHHGGRYALLCNIFAAAQRWDDVAMVRD 501
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 49/224 (21%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSWTT+I G++ G +EA +F M L N +S
Sbjct: 175 DVVSWTTLITGFSNSGQIDEARKIFDLMP-----------LKNTVS-------------- 209
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
NA+I+ Y + A ++F+ + +D SWS ++SG + G
Sbjct: 210 ----------------WNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGM 253
Query: 125 GRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL LF M+ + + P++ ++ +SAC+ +++G L + + T
Sbjct: 254 CNEALDLFMEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLG- 312
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW-----GALLNAC 222
++DMYG+ G + +A M E + W G LN C
Sbjct: 313 TVLLDMYGKCGSILDAAGVFNLMS-ERNVNSWNSMIAGLALNGC 355
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 195/290 (67%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D V WT MI G+ A+ F+ M+ + PNE T+V VLSACS + AL G+
Sbjct: 240 RKDTVCWTAMIDGFVRNEETNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGR 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VHSY+ ++++ ++ VGNA+INMY +CG + A VF+ + +D+I+++T+ISGL+MN
Sbjct: 299 WVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G RQA++LF +M+ + P +VTF+ +++ACSHGGLVD G +F +M+ Y + PQ +H
Sbjct: 358 GKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+VD+ GR G LEEA IR M + + + G LL+AC++H+N E+ + + +EL ++
Sbjct: 418 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG 477
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+S+ +A + +W++A ++R +++ G++K+ GCS IEVN I
Sbjct: 478 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 527
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T +I G+ G EA+ ++ M + P+ + ++L AC S AL G+ V
Sbjct: 111 NVYLYTALIDGFVSSGNYLEAIQLYSRMLH-ESILPDNYLMASILKACGSQLALREGREV 169
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA------------------- 105
HS + + S + LV ++ +Y KCG++G A +VF +
Sbjct: 170 HSR-ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228
Query: 106 -----------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
KD + W+ +I G N +AL+ F M V P++ T + ++SAC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSAC 288
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
S G ++ G + M +EI +++MY R G ++EA+ EM
Sbjct: 289 SQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KC + A ++F ++ ++ +I G +G +A+QL+S M+ + PD+ +
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 152
Query: 150 LISAC-SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++ AC S L + + +A+ + + ++++YG+ G L +A EMP
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGFSSNRLVR--LRIMELYGKCGELGDARRVFEEMP 209
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 191/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDV+SWT+MI GY++ +AV +FQEM K +P++ T+ +VLSAC+ + L
Sbjct: 309 MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK-VKPDKVTVASVLSACAHLGKLDV 367
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH YI R+ + VGN++I+MY KCG V A++VF+ + KD +SW++VISGLA
Sbjct: 368 GWAVHHYIR-RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 426
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL LFS M+ GV P TF+ ++ AC+H GLV++GL F++M +V+ +VP
Sbjct: 427 VNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAM 486
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G +++A FI++MPI + VW LL+AC++H N + + + L+
Sbjct: 487 KHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLE 546
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SNT+AG DRW+DA K+R+ + ++K +G S IEV+
Sbjct: 547 LDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 595
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 124/270 (45%), Gaps = 13/270 (4%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
+V W MI G ++ EA+ ++ M + N TL+ + AC+ +S + G+ +H
Sbjct: 81 LVVWNHMIRGLSQSDHPVEAIHMYTRMHH-QGITGNNLTLIFLFKACARVSDIVSGRKIH 139
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ + + V NA+I+MY CG +G A ++F+ + +D++SW+T+I G +
Sbjct: 140 VH-ALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKY 198
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQTQH 182
++ L+LF M + D VT + +I ACSH G D + K + ++
Sbjct: 199 KEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGN-- 256
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
++DMYGR L E A+ M E W AL+ H R+ N
Sbjct: 257 --TLIDMYGRRSLAELAQGVFDRMR-ERNIVSWNALVMG---HAKVGNLTAARKLFDNMP 310
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEI 272
V ++ M ++ A ++ DA K+ E+
Sbjct: 311 KRDVISWTSMITGYSQASQFSDAVKLFQEM 340
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 39/238 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW T+I GY++ +E + +F M + + T+V ++ ACS + F
Sbjct: 177 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM-TAANIKADAVTMVKIILACSHLGDWEF 235
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMY-------------------------------V 89
+ YI +L + +GN +I+MY
Sbjct: 236 ADSMVKYIKEN-NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHA 294
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
K G++ A ++F+ + +D+ISW+++I+G + A++LF M+ V PD VT +
Sbjct: 295 KVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVAS 354
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA-EAFIR 204
++SAC+H G +D G + + Q Y ++DMY + G++E+A E F R
Sbjct: 355 VLSACAHLGKLDVG---WAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHR 409
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRDVV+W+ MI GYA+ C+EA+++F EM+K PNE T+V+VL +C+ + A
Sbjct: 283 MDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGN-VYPNEVTMVSVLYSCAMLGAYET 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH YI + + ++ +G +I+ Y KCG + +++VF +++K++ +W+ +I GLA
Sbjct: 342 GKWVHFYIKKK-KMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLA 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G+ AL+ FS M+ N V P+DVTFI ++SACSH LVDQG LF +M ++I P+
Sbjct: 401 NNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRI 460
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEA FI MP VW LL +CR H+N EM + + +
Sbjct: 461 EHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITR 520
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SNT+A R EDA ++R I+ +KK GCS IE++
Sbjct: 521 LEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELD 569
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 126/225 (56%), Gaps = 14/225 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +V+W +M+ GY + G +E V +F+++ + + E ++ T+++VL AC ++ L
Sbjct: 182 MPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR-IEFDDVTMISVLMACGRLANLEI 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + YI ++ L +N + ++I+MY KCG V A ++F+ + +D+++WS +ISG A
Sbjct: 241 GELIGEYIVSK-GLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
++AL LF M V+P++VT ++++ +C+ G + G I K M
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVT 359
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ Q ++D Y + G ++ + +EM + ++ W AL+
Sbjct: 360 LGTQ------LIDFYAKCGYIDRSVEVFKEMSFKNVFT-WTALIQ 397
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 115/218 (52%), Gaps = 4/218 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K + ++ MI G A + + A+ +F++M + K + ++ T +VL ACS + AL G+
Sbjct: 83 KPESSAYNVMIRGLAFKRSPDNALLLFKKMHE-KSVQHDKFTFSSVLKACSRMKALREGE 141
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+ I + + V N +I MY CG +G+A VF+ + + +++W++++SG N
Sbjct: 142 QVHALI-LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKN 200
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G + ++LF ++ + DDVT I+++ AC ++ G ++ + + + +
Sbjct: 201 GLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS-KGLRRNNTL 259
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
++DMY + G ++ A EM + + W A+++
Sbjct: 260 TTSLIDMYAKCGQVDTARKLFDEMD-KRDVVAWSAMIS 296
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ A+ +FN + + +++ +I GLA AL LF M V D TF +++ A
Sbjct: 71 IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130
Query: 154 CSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
CS + +G ++ K+ E V T ++ MY G + A MP E
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENT-----LIQMYANCGQIGVARHVFDGMP-E 184
Query: 210 AEWSVWGALLN 220
W ++L+
Sbjct: 185 RSIVAWNSMLS 195
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/287 (40%), Positives = 190/287 (66%), Gaps = 1/287 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++SW MIGGY+ +EA+++F++M+++ EPN+ T V++L AC+ + AL G+
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPACAYLGALDLGK 385
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H+YI ++ + + ++I+MY KCG++ A QVF + K + SW+ +ISGLAM+
Sbjct: 386 WIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMH 445
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G AL+LF M G PDD+TF+ ++SACSH GLV+ G F +M Y+I P+ QH
Sbjct: 446 GHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQH 505
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAGL +EAEA ++ M ++ + ++WG+LL ACR+H N E+ + + L +
Sbjct: 506 YGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELE 565
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A A RW+D +IR ++ G+KK GCS IEV+
Sbjct: 566 PENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVD 612
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 139/241 (57%), Gaps = 7/241 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD VSW MI GYA+ G EEA++ FQEM++ A PNE+T+V VLSAC+ +L
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA-PNESTMVTVLSACAQSGSLEL 282
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +V S+I S LV NA+I+MY KCGD+ A +F + KD+ISW+ +I G +
Sbjct: 283 GNWVRSWIEDHGLGSNLRLV-NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M + V P+DVTF++++ AC++ G +D G + + + + T
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+ ++DMY + G +E A+ M ++ S W A+++ +H + E+F +R
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMALELFRQMRD 460
Query: 237 E 237
E
Sbjct: 461 E 461
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TMI G + A+ + M EPN T +L +C+ + A G+ +H ++
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCAKVGATQEGKQIHGHV 158
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM------------------------- 103
+ L V ++INMY + G++G A VF+
Sbjct: 159 -LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDA 217
Query: 104 ------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+ +D +SW+ +I+G A +G +AL F M V P++ T + ++SAC+
Sbjct: 218 RRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQS 277
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
G ++ G + ++ + + + ++DMY + G L++A
Sbjct: 278 GSLELGNWV-RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 191/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDV+SWT+MI GY++ +AV +FQEM K +P++ T+ +VLSAC+ + L
Sbjct: 186 MPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAK-VKPDKVTVASVLSACAHLGKLDV 244
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH YI R+ + VGN++I+MY KCG V A++VF+ + KD +SW++VISGLA
Sbjct: 245 GWAVHHYIR-RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 303
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL LFS M+ GV P TF+ ++ AC+H GLV++GL F++M +V+ +VP
Sbjct: 304 VNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAM 363
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G +++A FI++MPI + VW LL+AC++H N + + + L+
Sbjct: 364 KHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLE 423
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SNT+AG DRW+DA K+R+ + ++K +G S IEV+
Sbjct: 424 LDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVD 472
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 112/207 (54%), Gaps = 8/207 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW T+I GY++ +E + +F M + + T+V ++ ACS + F
Sbjct: 85 MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAA-NIKADAVTMVKIILACSHLGDWEF 143
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ YI +L + +GN +I+MY + G++ A ++F+ + +D+ISW+++I+G +
Sbjct: 144 ADSMVKYIKEN-NLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYS 202
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
A++LF M+ V PD VT +++SAC+H G +D G + + Q
Sbjct: 203 QASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVG---WAVHHYIRRHGVQA 259
Query: 181 QHYA--CVVDMYGRAGLLEEA-EAFIR 204
Y ++DMY + G++E+A E F R
Sbjct: 260 DIYVGNSLIDMYCKCGMVEKALEVFHR 286
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%)
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
A LV L+ + S +S +VH+ + V NA+I+MY CG +G A ++F+
Sbjct: 27 AALVVALTTNINASTISSSIHVHA---LKLGFESYLFVSNALIHMYAMCGQLGFAQKMFD 83
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG---L 159
+ +D++SW+T+I G + ++ L+LF M + D VT + +I ACSH G
Sbjct: 84 GMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEF 143
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
D + K + ++ ++DMYGR G L A MP
Sbjct: 144 ADSMVKYIKENNLEIDVYLGNT----LIDMYGRLGNLTAARKLFDNMP 187
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 191/300 (63%), Gaps = 14/300 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVVSW +MI + + G EEA+ +FQEME T+ +PN T+V VLSAC+ S FG
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEME-TQNVKPNGITMVGVLSACAKKSDFEFG 256
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI----- 116
++VHSYI R + S + NA+++MY KCG V A ++F+ + KD++SW+T++
Sbjct: 257 RWVHSYIE-RNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAK 315
Query: 117 -------SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA 169
GLAM+G G+ A+ LFS M + V P+ VTF ++ ACSH GLV++G F
Sbjct: 316 IGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQ 375
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
M VY ++P +HYAC+VD+ GRAGLLEEA I +MP+ SVWGALL AC IH N
Sbjct: 376 MELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVV 435
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + +L+ + + G + L+SN +A A +W+ + +R +R +GLKK+ GCS IEV+
Sbjct: 436 LAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 495
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 107/219 (48%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ +W T+I YA +++ +F M P++ T ++ A S + L
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + + L + N++I+ Y KCG++G+ +VF +D++SW+++I+
Sbjct: 155 GKAFHGMV-IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFV 213
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
GC +AL+LF M V P+ +T + ++SAC+ + G + + I
Sbjct: 214 QGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER-NRIXESL 272
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G +E+A+ +MP E + W +L
Sbjct: 273 TLSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTML 310
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 13/74 (17%)
Query: 1 MPKRDVVSWTTMIGGYAE------------RGFCEEAVSVFQEMEKTKEAEPNEATLVNV 48
MP++D+VSWTTM+ GYA+ G ++A+++F +M++ K +PN T N+
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDK-VKPNAVTFTNI 356
Query: 49 LSACSSISALSFGQ 62
L ACS + + G+
Sbjct: 357 LCACSHVGLVEEGR 370
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK+D+V+W +I Y + G EA+ VF E++ K + N+ TLV+ LSAC+ + AL
Sbjct: 326 MPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALEL 385
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI + + ++ V +A+I+MY KCGD+ A +VFN + +D+ WS +I GLA
Sbjct: 386 GRWIHSYIK-KNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLA 444
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+GCG +A+ +F M V P+ VTF + ACSH GLVD+ LF M + Y IVP+
Sbjct: 445 MHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPED 504
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR+G LE+A FI MPI SVWGALL AC+IH N + + L+
Sbjct: 505 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLE 564
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G L+SN +A + +W++ +++R +R GLKK+ GCS IE++
Sbjct: 565 LEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEID 613
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 123/221 (55%), Gaps = 9/221 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++DVVSW +MI G+ ++G ++A+ +F++ME +++ + + T+V VLSAC+ I L FG+
Sbjct: 196 EKDVVSWNSMINGFVQKGSPDKALELFKKME-SEDVKASHVTMVGVLSACAKIRDLEFGR 254
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V SYI ++V+ + NA+++MY KCG + A ++F+ + KD ++W+T++ G A++
Sbjct: 255 RVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAIS 313
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
A ++ + M D V + ALISA G ++ L++F + I
Sbjct: 314 EDYEAAREVLNAMPKK----DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQIT 369
Query: 183 YACVVDMYGRAGLLEEA---EAFIREMPIEAEWSVWGALLN 220
+ + G LE ++I++ I+ + V AL++
Sbjct: 370 LVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIH 410
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 4/230 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 59
+P+ + +W T+I YA ++ F +M ++ + PN+ T ++ A + +S+LS
Sbjct: 91 IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
GQ +H ++ + + V N++I+ Y CGD+ A +VF + KD++SW+++I+G
Sbjct: 151 LGQSLHG-MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 209
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +AL+LF M V VT + ++SAC+ ++ G + + V
Sbjct: 210 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNL 269
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
T A ++DMY + G +E+A+ M E + W +L+ I + E
Sbjct: 270 TLANA-MLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE 317
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 184/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +IGGY + G E + F+ M PN+ TLV VLSACS + AL
Sbjct: 264 MPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDM 323
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++VH Y S Y ++ VGN +I+MY KCG + A+ VFN L KD+ISW+T+I+GL
Sbjct: 324 GKWVHVYAESIGYKGNL--FVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGL 381
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G AL +F M G PD VTF+ ++SAC+H GLV G + FK+M Y IVPQ
Sbjct: 382 AIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQ 441
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL++A FIR+MPIE + +W ALL ACR+++N E+ + Q L+
Sbjct: 442 IEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLI 501
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + F ++SN + R ED +++ +R G +K GCS IE N S+
Sbjct: 502 ELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSV 554
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 108/252 (42%), Gaps = 54/252 (21%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVV W+ +I GY E A +F +M PN T+
Sbjct: 203 PERDVVMWSVLISGYIESKNMAAARELFDKM-------PNRDTMS--------------- 240
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
NA++N Y G+V + +VF+ + +++ SW+ +I G
Sbjct: 241 -------------------WNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVK 281
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + L+ F M++ G V P+D T +A++SACS G +D G K + E +
Sbjct: 282 NGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMG----KWVHVYAESIGYK 337
Query: 181 QHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDP 233
+ ++DMY + G++E A + + S W ++N IH + MFD
Sbjct: 338 GNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIIS-WNTIINGLAIHGHAPDALGMFDR 396
Query: 234 IRQELVNKKGVS 245
++ E GV+
Sbjct: 397 MKSEGEEPDGVT 408
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + +W M GY + G + V +F E+ + PN T ++ +C + +
Sbjct: 70 IPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIA-GMPNCFTFPMIIKSCGKLEGVRE 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +T++ ++ V ++I+MY K G V A +VF + ++++ W+ +I+G
Sbjct: 129 GEEVHC-CATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYI 187
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
+ G +LF L D V + LIS G I K M+ E+ +
Sbjct: 188 LCGDVVSGRRLFDL----APERDVVMWSVLIS----------GYIESKNMAAARELFDKM 233
Query: 180 ----TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
T + +++ Y G +E E EMP +S W L+
Sbjct: 234 PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFS-WNGLI 276
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 6/180 (3%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
E + +L +C + L + + I T + L ++ V I + + A ++F
Sbjct: 12 EEKFITLLRSCKNYERL---HQIQAQIVT-HGLEHNDFVAPNFITTCSRFKRIHHARKLF 67
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + + +W+ + G NG R + LF + P+ TF +I +C V
Sbjct: 68 DKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVR 127
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+G + +T + + ++DMY + G +E+A EM E VW A++N
Sbjct: 128 EGEEV-HCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMH-ERNVVVWTAIING 185
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D+ +W +I Y + G +EA+++F+E++ K +PNE TL + L+AC+ + A+
Sbjct: 324 MPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDL 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI + + ++ + ++I+MY KCG + A++VF + +D+ WS +I+GLA
Sbjct: 384 GGWIHVYIK-KQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLA 442
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G GR A+ LFS M V P+ VTF L+ ACSH GLVD+G + F M VY +VP +
Sbjct: 443 MHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGS 502
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG LEEA I +MPI SVWGALL ACRI+ N E+ + L+
Sbjct: 503 KHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLE 562
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A A +W+ +++R ++ GL+K+ GCS IEVN
Sbjct: 563 TDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVN 611
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 33/235 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ +W T+I +A + + VF +M + PN T V+ A + +S+L
Sbjct: 90 IPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA 149
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H + + + N++I+ Y GD+ A VF+ + KD++SW+++ISG
Sbjct: 150 GQAIHGMV-MKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFV 208
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS---------------HGGLVDQGLI 165
G +ALQLF M + P+ VT + ++SAC+ +D LI
Sbjct: 209 QGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLI 268
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
L AM +DMY + G LE+A +M E + W +++
Sbjct: 269 LSNAM----------------LDMYVKCGSLEDARRLFDKME-EKDIVSWTTMID 306
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W +I Y + G EA+ VF E++ K + N+ TLV+ LSAC+ + AL
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI ++ + ++ V +A+I+MY KCGD+ + +VFN + +D+ WS +I GLA
Sbjct: 384 GRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+GCG +A+ +F M V P+ VTF + ACSH GLVD+ LF M + Y IVP+
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEE 502
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR+G LE+A FI MPI SVWGALL AC+IH N + + L+
Sbjct: 503 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G L+SN +A +WE+ +++R +R GLKK+ GCS IE++
Sbjct: 563 LEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 41/292 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSW +MI G+ ++G ++A+ +F++ME +++ + + T+V VLSAC+ I L F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKME-SEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIA 97
G+ V SYI ++V+ + NA+++MY KCG + G A
Sbjct: 251 GRQVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Query: 98 I--------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFI 148
I +V N + KD+++W+ +IS NG +AL +F L + + + +T +
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+ +SAC+ G ++ G + + + I + ++ MY + G LE++ +
Sbjct: 370 STLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE- 427
Query: 209 EAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
+ + VW A++ +H +MF +++ V GV+ F S+T
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 3/229 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK + +W T+I YA ++ F +M + PN+ T ++ A + +S+LS
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H ++ + + V N++I+ Y CGD+ A +VF + KD++SW+++I+G
Sbjct: 150 GQSLHG-MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL+LF M V VT + ++SAC+ ++ G + + V T
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
A ++DMY + G +E+A+ M E + W +L+ I + E
Sbjct: 269 LANA-MLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE 315
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 188/291 (64%), Gaps = 2/291 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SWT+MI Y++ G +AV +FQEM TK +P+E T+ +VLSAC+ I AL
Sbjct: 988 MPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTK-VKPDEITVASVLSACAHIGALDV 1046
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +YD++ VGNA+I+MY KCG V + VF + +D +SW++VI+GLA
Sbjct: 1047 GEAVHEYIR-KYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLA 1105
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL LFSLM+ GV P TF+ ++ AC+H G+VD+GL F++M VY + P+
Sbjct: 1106 VNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEM 1165
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G L A FI+ MP++ + VW LL+A ++H N + + ++L+
Sbjct: 1166 KHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSASQVHGNLHLAEIATKKLLE 1225
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ G + L SNT+AG++RWED K+R + + K + S +E+N S
Sbjct: 1226 TDPSNSGNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEINDS 1276
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 34/237 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW ++I GY E + VF+EM + + + + T+V V+ AC+ +
Sbjct: 856 MSERDLVSWNSLICGYGRCRRYSEVLVVFEEM-RMADVKGDAVTMVKVVLACTVLGEWGV 914
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ YI + V +GN +I+MY + V +A +VF+ + ++M+SW+ +I G
Sbjct: 915 VDAMIEYIEEN-KVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYG 973
Query: 121 MNG-----------------------------CGR--QALQLFSLMIINGVFPDDVTFIA 149
G G+ +A++LF M++ V PD++T +
Sbjct: 974 KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVAS 1033
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++SAC+H G +D G + + + Y++ ++DMY + G +E+ + EM
Sbjct: 1034 VLSACAHIGALDVGEAVHEYIRK-YDVNADIYVGNALIDMYCKCGAVEKGLSVFEEM 1089
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 97/209 (46%), Gaps = 10/209 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + W MI G+++ EA+ + M ++ N T +L AC+ IS +S
Sbjct: 756 IPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLM-YSQALFGNNLTYPFLLKACARISNVSC 814
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +D + V NA+I+ Y ++G A +VF+ ++ +D++SW+++I G
Sbjct: 815 TTVHARVLKLGFDSDL--FVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYG 872
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS---HGGLVDQGLILFKAMSTVYEIV 177
+ L +F M + V D VT + ++ AC+ G+VD + + ++
Sbjct: 873 RCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVY 932
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++DMYGR +++ A M
Sbjct: 933 LGN----TLIDMYGRRSMVDLARRVFDRM 957
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 192/288 (66%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWT +I GYA+ G+ +E+++VF +M KT + + + +VLSAC+ ++AL
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTG-MKSDRFIMGSVLSACADLAALEL 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+Y+ + ++ +VG+A+++MY K G + A QVF+ + ++ +SW+++I+G A
Sbjct: 161 GRQFHAYV-VQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCA 219
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LF M+ G+ P++++F+ ++SACSH GLV++G F M+ Y IVP
Sbjct: 220 QHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDV 279
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C++D+ GRAG L+EAE FI MP+E + SVWGALL ACRIH N E+ I + L+
Sbjct: 280 SHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLG 339
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A A +W+DA K+R ++ G+ K+ G SWIEV
Sbjct: 340 MEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEV 387
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 39/256 (15%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--- 92
K +PN+ TL V+ AC+SI++L G+ H+YI + +V A+++MY +CG
Sbjct: 4 KGVKPNQFTLSTVVKACASIASLEQGKQAHNYI-IKMGFESDVVVQTALVHMYARCGSLE 62
Query: 93 ----------------------------DVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
D+ A+++F ++ +D++SW+ VI+G A NG
Sbjct: 63 DAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGY 122
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G ++L +F+ M G+ D +++SAC+ ++ G F A +
Sbjct: 123 GDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGR-QFHAYVVQSGFALDIVVGS 181
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH--RNDE--MFDPIRQELVN 240
+VDMY ++G +E+A +MP E S W +++ C H ND +F+ + Q +
Sbjct: 182 ALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240
Query: 241 KKGVS-VGTFALMSNT 255
+S VG + S+T
Sbjct: 241 PNEISFVGVLSACSHT 256
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 194/289 (67%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V WT MI G+ A+ F+ M+ + PNE T+V VLSACS + AL G++
Sbjct: 205 KDTVCWTAMIDGFVRNEETNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRW 263
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHSY+ ++++ ++ VGNA+INMY +CG + A VF+ + +D+I+++T+ISGL+MNG
Sbjct: 264 VHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 322
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
RQA++LF +M+ + P +VTF+ +++ACSHGGLVD G +F +M+ Y + PQ +HY
Sbjct: 323 KSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHY 382
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GR G LEEA IR M + + + G LL+AC++H+N E+ + + +EL ++
Sbjct: 383 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQ 442
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+S+ +A + +W++A ++R +++ G++K+ GCS IEVN I
Sbjct: 443 ADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 491
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T +I G+ G EA+ ++ M + P+ + ++L AC S AL G+ V
Sbjct: 101 NVYLYTALIDGFVSSGNYLEAIQLYSRMLH-ESILPDNYLMASILKACGSQLALREGREV 159
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDMISWSTVISGLA 120
HS + + S + LV ++ +Y KCG++G A +VF + KD + W+ +I G
Sbjct: 160 HSR-ALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 218
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL+ F M V P++ T + ++SACS G ++ G + M +EI
Sbjct: 219 RNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNL 277
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
+++MY R G ++EA+ EM
Sbjct: 278 FVGNALINMYSRCGSIDEAQTVFDEM 303
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KC + A ++F ++ ++ +I G +G +A+QL+S M+ + PD+ +
Sbjct: 83 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 142
Query: 150 LISAC-SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP- 207
++ AC S L + + +A+ + + ++++YG+ G L +A EMP
Sbjct: 143 ILKACGSQLALREGREVHSRALKLGFSSNRLVR--LRIMELYGKCGELGDARRVFEEMPE 200
Query: 208 --IEAEWSVWGALLNACRIHRNDE 229
+ + W A+++ RN+E
Sbjct: 201 DVVAKDTVCWTAMIDG--FVRNEE 222
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+++ TMI G + G +A+ +F+ M + P T V VL+ACS + F
Sbjct: 303 MKDRDVITYNTMISGLSMNGKSRQAIELFRVM-VGRRLRPTNVTFVGVLNACSHGGLVDF 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + ++ Y + ++++ + G + A + M D I T++S
Sbjct: 362 GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 421
Query: 120 AMN 122
M+
Sbjct: 422 KMH 424
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 254 bits (648), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW MI GYA+ G EA+++FQEM+ + +PN TLV+VL A + I AL
Sbjct: 230 MPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVSVLPAIARIGALEL 288
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y + + + + +++G+A+++MY KCG + A+QVF L ++ I+WS +I A
Sbjct: 289 GKWIHLY-AGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFA 347
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ F LM GV P+DV +I ++SACSH GLV++G F M V + P+
Sbjct: 348 MHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRI 407
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEAE IR MPIE + +W ALL AC++H+N +M + + + L+
Sbjct: 408 EHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLME 467
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G++ +SN +A WE ++R +++ M ++K GCSWIE++
Sbjct: 468 LAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIH 516
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 126/301 (41%), Gaps = 56/301 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERG---FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 57
MP+ + W T++ AE EA+ +F M +PN T +VL AC+ S
Sbjct: 78 MPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137
Query: 58 LSFGQYVHSYIST----RYDLSVSNLV--------------------------------- 80
L G+ +H I + +SNLV
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197
Query: 81 ----GNAV-----INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
GN V I+ V+ GD+ A +F+ + + ++SW+ +ISG A NG +A+ L
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINL 257
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMY 190
F M + + P+ VT ++++ A + G ++ G I A EI + +VDMY
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEI--DDVLGSALVDMY 315
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTF 249
+ G ++EA +P + W A++ A +H R ++ I L+ K GV+
Sbjct: 316 SKCGSIDEALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAI--IHFHLMGKAGVTPNDV 372
Query: 250 A 250
A
Sbjct: 373 A 373
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 194/290 (66%), Gaps = 5/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+ G++
Sbjct: 286 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGRW 344
Query: 64 VHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGLA 120
+H YI+ + V+N+ + ++I+MY KCGD+ A QVF+ ++ + + +W+ +ISG A
Sbjct: 345 IHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFA 404
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A +FS M +NG+ PDD+TF+ L+SACSH G++D G +F++M+ YEI P+
Sbjct: 405 MHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKL 464
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ G +GL +EAE I MP+E + +W +LL AC+IH N E+ + ++L+
Sbjct: 465 EHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIK 524
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT-GCSWIEVN 289
+ + G++ L+SN +A A RW + KIR + G+KKK GCS IE++
Sbjct: 525 IEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEID 574
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GY E G +EA+ +F+EM P+E+T+V V+SAC+ ++
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHS+I+ S +V NA+I++Y K G+V A ++F+ L KD+ISW+T+I G
Sbjct: 241 GRHVHSWINDHGFASNLKIV-NALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + K + V
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
V Q ++DMY + G ++ A+ S W A+++ +H R + FD
Sbjct: 360 VSSLQ--TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFD 414
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + P+ T +L +C+ GQ +
Sbjct: 53 NLLIWNTMFRGHALSSDPVSALKLYLVM-ISLGLLPDSYTFPFLLKSCAKSKIRKEGQQI 111
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----------------- 106
H ++ +DL + V ++I+MY + G + A +VF++ ++
Sbjct: 112 HGHVLKLGFDLDI--YVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRG 169
Query: 107 --------------KDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFPDDVTFIALI 151
KD++SW+ +ISG G ++AL+LF +M++ V PD+ T + ++
Sbjct: 170 YIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVV 229
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
SAC+ ++ G + ++ + + ++D+Y + G +E A
Sbjct: 230 SACAQSDSIELGRHVHSWIND-HGFASNLKIVNALIDLYSKFGEVETA 276
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + +W MI G+A G A +F M + EP++ T V +LSACS L
Sbjct: 388 MSNRSLSTWNAMISGFAMHGRANAAFDIFSRM-RMNGIEPDDITFVGLLSACSHSGMLDL 446
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + ++ Y+++ +I++ G A ++ N + + D + W +++
Sbjct: 447 GRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKAC 506
Query: 120 AMNG 123
++G
Sbjct: 507 KIHG 510
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
AI VF+ + +++ W+T+ G A++ AL+L+ +MI G+ PD TF L+ +C+
Sbjct: 42 AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101
Query: 157 GGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+ +G I + +++ + ++ MY + G LE+A
Sbjct: 102 SKIRKEGQQIHGHVLKLGFDL--DIYVHTSLISMYAQNGRLEDAR 144
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R VVSW MI GYA+ G EA+++FQEM+ + +PN TLV+VL A + I AL
Sbjct: 230 MPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVSVLPAIARIGALEL 288
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y + + + + +++G+A+++MY KCG + A+QVF L ++ I+WS +I A
Sbjct: 289 GKWIHLY-AGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFA 347
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ F LM GV P+DV +I ++SACSH GLV++G F M V + P+
Sbjct: 348 MHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRI 407
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEAE IR MPIE + +W ALL AC++H+N +M + + + L+
Sbjct: 408 EHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLME 467
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G++ +SN +A WE ++R +++ M ++K GCSWIE++
Sbjct: 468 LAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIH 516
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 125/301 (41%), Gaps = 56/301 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERG---FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA 57
MP+ + W T++ AE EA+ +F M +PN T +VL AC+ S
Sbjct: 78 MPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASR 137
Query: 58 LSFGQYVHSYI-------------------------STRYDLSVSNLV------------ 80
L G+ +H I Y L N+V
Sbjct: 138 LREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDK 197
Query: 81 ----GNAV-----INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
GN V I+ V+ GD+ A +F+ + + ++SW+ +ISG A NG +A+ L
Sbjct: 198 RKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINL 257
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMY 190
F M + + P+ VT ++++ A + G ++ G I A EI + +VDMY
Sbjct: 258 FQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEI--DDVLGSALVDMY 315
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTF 249
+ G +++A +P + W A++ A +H R ++ I L+ K GV+
Sbjct: 316 SKCGSIDKALQVFETLP-KRNAITWSAIIGAFAMHGRAEDAI--IHFHLMGKAGVTPNDV 372
Query: 250 A 250
A
Sbjct: 373 A 373
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 189/290 (65%), Gaps = 2/290 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW T+IGGY +EA+ +FQEM ++ E+ PN+ T+V++L AC+ + A+ G++
Sbjct: 262 KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTIVSILPACAHLGAIDIGRW 320
Query: 64 VHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI + D++ + + ++I+MY KCGD+ A QVFN + +K + SW+ +I G AM+
Sbjct: 321 IHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 380
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G LFS M NG+ PDD+TF+ L+SACSH G +D G +FK+M+ Y+I P+ +H
Sbjct: 381 GRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEH 440
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EA+ I+ MP+E + +W +LL ACR H N E+ + + L+ +
Sbjct: 441 YGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVE 500
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G++ L+SN +A A W++ K+R + G+KK GCS IE++ +
Sbjct: 501 PENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEV 550
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F+EM KT P+E T+V VLSAC+ ++
Sbjct: 158 IPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN-VRPDEGTMVTVLSACAQSRSVEL 216
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I S +V NA+I++Y KCG V A +F L+ KD++SW+T+I G
Sbjct: 217 GRQVHSWIDDHGFGSNLKIV-NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYT 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
++AL LF M+ +G P+DVT ++++ AC+H G +D G I + ++
Sbjct: 276 HMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNA 335
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A M + S W A++ +H R + FD
Sbjct: 336 PSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRANAGFD 388
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 32/221 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TM+ GYA A+ ++ M + PN T +L +C+ A GQ +H ++
Sbjct: 34 WNTMLRGYALSSDPVSALKLYVVM-ISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHV 92
Query: 69 ---STRYDLSV-SNLVG--------------------------NAVINMYVKCGDVGIAI 98
DL V ++L+ A+I Y G++ A
Sbjct: 93 LKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQ 152
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
++F+ + KD++SW+ +ISG A G ++AL+LF M+ V PD+ T + ++SAC+
Sbjct: 153 EMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSR 212
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
V+ G + + + + ++D+Y + G +E A
Sbjct: 213 SVELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGQVETA 252
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV W MIGGYA+ G E++ +F+ M K A PNE T++ VLSAC + AL
Sbjct: 233 MKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK-AIPNEVTVLAVLSACGQLGALES 291
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI + + ++ VG A+I+MY KCG + A VF+ + KD+++W+++I G A
Sbjct: 292 GRWIHSYIENK-GIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYA 350
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + ALQLF M G P D+TFI ++SAC HGGLV++G F+ M Y I P+
Sbjct: 351 MHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKI 410
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V++ GRAG LEEA ++ M I A+ +WG LL CR+H N ++ + I + LV+
Sbjct: 411 EHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVD 470
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+K + GT+ L+SN +A WE K+R ++ G++K+ GCS IEV+ +
Sbjct: 471 QKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKV 522
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V S++ +I + + + A + +M EPN T +VL +CS L G+ +
Sbjct: 109 NVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCG-VEPNAFTFSSVLKSCS----LESGKVL 163
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------------- 111
H + + L V ++++Y + GDV A Q+F+ + + ++S
Sbjct: 164 HCQ-AIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGE 222
Query: 112 ------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
W+ +I G A +G ++L+LF M++ P++VT +A++SA
Sbjct: 223 LDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSA 282
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
C G ++ G + + I ++DMY + G LE+A
Sbjct: 283 CGQLGALESGRWIHSYIEN-KGIQINVHVGTALIDMYSKCGSLEDAR 328
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY + EA+ +F+EM+ +E T+V+V++AC+ + AL
Sbjct: 237 MPERDTVSWTAMIDGYVQAARFREALEMFREMQ-CSNVSADEFTMVSVITACAQLGALEM 295
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V Y+S R + + VGNA+I+MY KCG + A+ VF + ++D +W+ +I GLA
Sbjct: 296 GEWVRVYMS-RQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLA 354
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +A+++F MI PD+VTFI +++AC+H GLVD+G F +M Y I P
Sbjct: 355 VNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNV 414
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C++D++GRAG + EA I +MP+ ++WG LL ACR+H N E+ + + + L+
Sbjct: 415 VHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQ 474
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN +A +RWED ++R I G+KK+ GCS IE+N
Sbjct: 475 MDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMN 523
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 43/253 (16%)
Query: 3 KRDV-VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSF 60
+RD V W +I G+ EA F +M + A P T V+VLSAC + +
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAA-PTPVTYVSVLSACGKGTGDVLL 163
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G VH + DL V N A+++MY +C D+ A ++F+ + + ++SW++++S
Sbjct: 164 GMQVHGRVVGSGVLPDLRVEN----ALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLS 219
Query: 118 GLAMNG-------------------------------CGRQALQLFSLMIINGVFPDDVT 146
GL G R+AL++F M + V D+ T
Sbjct: 220 GLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFT 279
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+++I+AC+ G ++ G + MS I ++DMY + G +E A ++M
Sbjct: 280 MVSVITACAQLGALEMGEWVRVYMSR-QGIKMDAFVGNALIDMYSKCGSIERALDVFKDM 338
Query: 207 PIEAEWSVWGALL 219
+++ W A++
Sbjct: 339 HHRDKFT-WTAII 350
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
E+AV+ + M + A P+ T +L A + S+ + + VH+++ ++ + + V
Sbjct: 25 EDAVAGYARM-LARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHV-VKFGMGRNAHVAT 82
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR--QALQLFSLMIINGV 140
+++ Y GD A + + + W+ +ISG N C R +A F M G
Sbjct: 83 SLVTAYAAGGDGAAARALLSERERDTPVVWNALISG--HNRCRRFGEACCSFVDMARAGA 140
Query: 141 FPDDVTFIALISACSHG------GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
P VT+++++SAC G G+ G ++ ++P + +VDMY
Sbjct: 141 APTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSG------VLPDLRVENALVDMYAECA 194
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFD 232
+E A M + + S W +LL+ R+ R DE D
Sbjct: 195 DMESAWKLFDGMQVRSVVS-WTSLLSGLTRLGRVDEARD 232
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 181/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +I GYA+ G EEA+++F EM++ E+ N +T LS C+ I+AL
Sbjct: 351 MPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESS-NRSTFSCALSTCADIAALEL 409
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + VGNA++ MY KCG A VF + KD++SW+T+I+G A
Sbjct: 410 GKQVHGQV-VKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYA 468
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GRQAL LF M GV PD++T + ++SACSH GL+D+G F +M Y + P +
Sbjct: 469 RHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTS 528
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG LEEAE +R MP + + WGALL A RIH N E+ + + +
Sbjct: 529 KHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFK 588
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW D K+R ++R G++K TG SW+EV I
Sbjct: 589 MEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKI 640
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 92/182 (50%), Gaps = 26/182 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK+DVVSW M+ GYA+ GF +EA VF +M N + +L+A
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM-----PHRNSISWNGLLAA--------- 179
Query: 61 GQYVHS---YISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
YVH+ + R S SN + N ++ YVK +G A Q+F+ + +D+ISW+T
Sbjct: 180 --YVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNT 237
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+ISG A G QA +LF+ I VF T+ A++S G+VD+ F M
Sbjct: 238 MISGYAQVGDLSQAKRLFNESPIRDVF----TWTAMVSGYVQNGMVDEARKYFDEMPVKN 293
Query: 175 EI 176
EI
Sbjct: 294 EI 295
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 21/174 (12%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT M+ GY + G +EA F EM E N V I+ F
Sbjct: 259 PIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFE 318
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
IS+ N +I Y + G + A ++F+M+ +D +SW+ +ISG A
Sbjct: 319 AMPCRNISS----------WNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQ 368
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
NG +AL +F M +G + TF +S C+ HG +V G
Sbjct: 369 NGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGF 422
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 98/205 (47%), Gaps = 19/205 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V+W I + G C+ A+ VF M + N ++S + S + +
Sbjct: 45 DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNA-----MISGYLRNAKFSLARDL 99
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R DL N ++ YV+ +G A ++F+++ KD++SW+ ++SG A NG
Sbjct: 100 FDKMPER-DL----FSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F+ M + +++ L++A H G + + LF++ S +E++ +
Sbjct: 155 VDEAREVFNKM----PHRNSISWNGLLAAYVHNGRLKEARRLFESQSN-WELIS----WN 205
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIE 209
C++ Y + +L +A MP+
Sbjct: 206 CLMGGYVKRNMLGDARQLFDRMPVR 230
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 253 bits (645), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 193/292 (66%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++V+W+ MI GYA+ F ++A+ ++ ++ ++ NE +V+V+++C+ + AL
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ-SEGVHANETVMVSVIASCAHLGALEL 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H YI R ++V+ ++G A+++MY +CG + AI VF+ L +D +SW+T+I+G A
Sbjct: 264 GERAHDYI-LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL+ FS M G+ P ++TF A++SACSHGGLV++GL LF++M Y I P+
Sbjct: 323 MHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRL 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L EAE F+ EMP++ +WGALL ACRIH+N E+ + + L+
Sbjct: 383 EHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIE 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + L+SN +A ++WE+ IR ++ G+ K G + E++ +
Sbjct: 443 LKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKV 494
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 20/189 (10%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
+ +LV + S I + S YV IS +S +++V Y+K GDV A ++F
Sbjct: 151 QNSLVTMYSTLGDIKSAS---YVFRRISCLDVVSWTSMVAG-----YIKSGDVTSARKLF 202
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + K++++WS +ISG A N +A++L+ L+ GV ++ +++I++C+H G ++
Sbjct: 203 DKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALE 262
Query: 162 QG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G IL M TV I+ +VDMY R G +++A ++P S W
Sbjct: 263 LGERAHDYILRNKM-TVNLILG-----TALVDMYARCGSIDKAIWVFDQLPGRDALS-WT 315
Query: 217 ALLNACRIH 225
L+ +H
Sbjct: 316 TLIAGFAMH 324
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/289 (43%), Positives = 189/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++V SWT+MI G+ + G EA+ +F ++E + PNE T+V+VL+AC+ + L
Sbjct: 102 MPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLED-EAVRPNEVTVVSVLAACADLGDLDL 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y ST+ + V N +I+MYVKCG + A +VF + + ++SWS +I+GLA
Sbjct: 161 GRIVHEY-STKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLA 219
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL LFS MI GV P+ VTFI L+ ACSH GL+D+G F +M+ Y ++PQ
Sbjct: 220 MHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQI 279
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD++ RAGLLEEA FI MPI+ VWGALL C++H+N ++ + + L
Sbjct: 280 EHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSE 339
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + ++SN +A A+RWEDA ++R ++ G+KK +G S I VN
Sbjct: 340 LDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVN 388
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 34/221 (15%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T VL AC +S + G+ +H + + + N ++N+Y CG++G A+
Sbjct: 8 PDTFTCSFVLKACLKLSDVVNGKTIHGLFQ-KLGFGSNLFLQNMILNLYGLCGEMGDAML 66
Query: 100 VFNMLAYKDMI-------------------------------SWSTVISGLAMNGCGRQA 128
+F + +D + SW+++ISG G +A
Sbjct: 67 LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+ LF + V P++VT +++++AC+ G +D G I+ + ST ++D
Sbjct: 127 IDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHE-YSTKSGFKRNVHVCNTLID 185
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
MY + G LE A EM E W A++ +H E
Sbjct: 186 MYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAE 225
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 187/291 (64%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK--TKEAEPNEATLVNVLSACSSISAL 58
MP+R+V+SW+ MI GY G +EA+++F+EM+ + PNE T+ VL+AC + AL
Sbjct: 125 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 184
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVIS 117
G++ H+YI + + V ++G A+I+MY KCG V A VF N+ KD+++WS +IS
Sbjct: 185 EHGKWAHAYID-KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMIS 243
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G + + LFS MI GV P+ VTF+A+ AC HGGLV +G + M+ Y I+
Sbjct: 244 GLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSII 303
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P QHY C+VD+YGRAG ++EA ++ MP+E + VWGALL+ R+H + E + ++
Sbjct: 304 PTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKK 363
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L+ + + G + L+SN +A RWED +RD + MG+KK GCS IEV
Sbjct: 364 LIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 414
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 131/282 (46%), Gaps = 13/282 (4%)
Query: 2 PKRDVVSWTTMIGGYAE-----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56
P + W T+I + + G +S+F M + +P+ T +L + +S S
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRM-RFHGVQPDFHTFPFLLQSFASPS 78
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
L G+ VH+ I R+ L++ V ++I+MY G V +A +F ++ +++ISWS +I
Sbjct: 79 LLHLGRSVHAQI-LRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMI 137
Query: 117 SGLAMNGCGRQALQLF---SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
+G G ++AL LF ++ +N V P++ T +++AC G ++ G +
Sbjct: 138 NGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKC 197
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDP 233
V A ++DMY + G +E+A + + W A+++ +H E
Sbjct: 198 GMPVDVVLGTA-LIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVG 256
Query: 234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275
+ +++N +GV ++ F ++ +D +RRM
Sbjct: 257 LFSKMIN-QGVRPNAVTFLA-VFCACVHGGLVSEGKDYLRRM 296
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 192/293 (65%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW +MI GY G EA+ +F +M++ + +P+E T+V++L+A + + AL
Sbjct: 217 MPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEER-IKPSEFTMVSLLNASARLGALKQ 275
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI ++L+V +V ++I+MY KCG +G A QVF M K + SW+T+I GL
Sbjct: 276 GEWIHDYIRKNNFELNV--IVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGL 333
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AMNGC +A+QLFS + + + PDDVTF+ +++AC++ GLVD+ F MS Y+I P
Sbjct: 334 AMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPS 393
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C+VD GRAGLLEEAE IR MP+ + +W +LL+ACR H N E+ + +V
Sbjct: 394 IKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIV 453
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A +D++E+A + R ++ ++K+ GCS IEVN I
Sbjct: 454 DLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEI 506
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 113/259 (43%), Gaps = 49/259 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ SW T+I G+++ A+S+F +M +P+ T +V A + + +G +
Sbjct: 88 NLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQL 147
Query: 65 HSYISTRYDLSVSNLVGNAVINMYV-------------------------------KCGD 93
H + + L + N +I MY KCG+
Sbjct: 148 HGRV-IKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGE 206
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
V + ++F+ + ++ +SW+++ISG NG R+AL LF M + P + T ++L++A
Sbjct: 207 VDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNA 266
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQH------YACVVDMYGRAGLLEEAEAFIREMP 207
+ G + QG +++ + + A ++DMY + G + EA P
Sbjct: 267 SARLGALKQG-------EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAP 319
Query: 208 IE--AEWS--VWGALLNAC 222
++ + W+ + G +N C
Sbjct: 320 LKGLSSWNTMILGLAMNGC 338
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFIAL 150
GD+ A VF + ++ SW+T+I G + + A+ LF ++I++ V P +T+ ++
Sbjct: 72 GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSV 131
Query: 151 ISACSHGGLVDQGLILF-KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPI 208
A + GL G L + + + P ++ ++ MY G L E +AF M
Sbjct: 132 FKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRN--TIIYMYANCGFLSEMWKAFYERMDF 189
Query: 209 E-AEWSVWGALLNAC-RIHRNDEMFD--PIR 235
+ W+ L C + + ++FD P+R
Sbjct: 190 DIVAWNSMIMGLAKCGEVDESRKLFDEMPLR 220
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 194/290 (66%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D V WT MI G+ A+ F+ M+ + PNE T+V VLSACS + AL G+
Sbjct: 240 RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGR 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VHSY+ ++++ ++ VGNA+INMY +CG + A VF+ + +D+I+++T+ISGL+MN
Sbjct: 299 WVHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G RQA++LF +MI + P +VTF+ +++ACSHGGLVD G +F +M+ Y + PQ +H
Sbjct: 358 GKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+VD+ GR G LEEA IR M + + + G LL+AC++H+N E+ + + + L ++
Sbjct: 418 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG 477
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+S+ +A + +W++A ++R +++ G++K+ GCS IEVN I
Sbjct: 478 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 527
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 33/232 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T +I G+ G +A+ ++ M P+ + ++L AC S AL G+ V
Sbjct: 111 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS-ILPDNYLMASILKACGSQLALREGREV 169
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA------------------- 105
HS + + LS + LV ++ +Y KCG++G A +VF +
Sbjct: 170 HSR-ALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLV 228
Query: 106 -----------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
KD + W+ +I G N +AL+ F M V P++ T + ++SAC
Sbjct: 229 EEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 288
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
S G ++ G + M +EI +++MY R G ++EA+ EM
Sbjct: 289 SQLGALEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDEM 339
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KC + A ++F ++ ++ +I G +G A+QL+S M+ + + PD+ +
Sbjct: 93 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 152
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMP 207
++ AC + +G + S ++ + ++++YG+ G L +A EMP
Sbjct: 153 ILKACGSQLALREGR---EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 209
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 188/292 (64%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
M R++VSWT MI GY + GF E+A+ +F EM + E +PN T+V+VL AC+ +AL
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVIS 117
G+ +H + + L +++ V A+ MY KC + A F+M+A K++I+W+T+I+
Sbjct: 333 RGRRIHDF-ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMIT 391
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A +GCG +A+ +F M+ GV PD VTF+ L+S CSH GL+D GL F M T++ +
Sbjct: 392 AYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVE 451
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYACVVD+ GRAG L EA+ I +MP++A SVWGALL ACR HRN E+ + +
Sbjct: 452 PRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARR 511
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L + + G + L+SN +A A WE+ K+R ++ G+KK GCSWIE+N
Sbjct: 512 LFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEIN 563
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 34/153 (22%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC------------ 91
TL VL +C+ +S + G+ VH R L VG ++I+MYVKC
Sbjct: 183 TLPFVLKSCADLSRVCMGRCVHGQ-GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 241
Query: 92 -------------------GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
G++G+A +F + +++++SW+ +ISG NG QAL LF
Sbjct: 242 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 301
Query: 133 SLMIING--VFPDDVTFIALISACSHGGLVDQG 163
M+ +G + P+ VT ++++ AC+ +++G
Sbjct: 302 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 334
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/185 (18%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ ++ + + + + GQ H+ I + L + + ++ MY GD+ A+
Sbjct: 75 PHPSSYAPIFQFLTRHNFIKLGQQAHAQI-VLHGLQPNAFLAAKMVAMYASSGDLDSAVV 133
Query: 100 VFNMLAYKDMISWSTVISGLAMNG---CGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
VF+ + + ++++I +G L+ ++ M G+ D+ T ++ +C+
Sbjct: 134 VFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCAD 193
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
V G + + + Y A ++DMY + G++ +A +M I + +
Sbjct: 194 LSRVCMGRCVH---GQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM-IVRDMAS 249
Query: 215 WGALL 219
W AL+
Sbjct: 250 WNALI 254
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 191/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK D V+W+ MIGGYA G EAV++F+EM+ E P+E T+V++LSAC+ + AL
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMA-EVCPDEITMVSMLSACTDLGALEL 252
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI R+++ V NA+I+M+ KCGD+ A+++F + K ++SW++VI G+A
Sbjct: 253 GKWIEAYIE-RHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMA 311
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A LF M +GV PDDV FI L+SACSH GLV++G F +M Y++VP+
Sbjct: 312 MHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKI 371
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDMY R GL++EA F+R MPIE + L++ACR H ++ + I + L+
Sbjct: 372 EHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMK 431
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+SN +A WE KIR+ + G+KK G + IE++ I+
Sbjct: 432 HEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIY 484
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 103/204 (50%), Gaps = 5/204 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + T+I YA+ G ++ + PN+ T VL AC+ + L+ GQ V
Sbjct: 95 DAFLFNTLIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTV 154
Query: 65 H-SYISTRYDLSVSNLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H S + +D + V N +++MY C G + A +VF+ + D ++WS +I G A
Sbjct: 155 HGSVVKFGFDCDIH--VQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARV 212
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+ LF M + V PD++T ++++SAC+ G ++ G + +A +EI +
Sbjct: 213 GRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELGKWI-EAYIERHEIHKPVEV 271
Query: 183 YACVVDMYGRAGLLEEAEAFIREM 206
++DM+ + G + +A R M
Sbjct: 272 SNALIDMFAKCGDISKALKLFRAM 295
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 188/287 (65%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGYA +EA+ VFQEM K E PN+ T++++L AC+ + A+ G++
Sbjct: 274 KDVISWNTLIGGYAYINHHKEALLVFQEMLKLGET-PNDVTMLSILPACAHLGAIDIGRW 332
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI + ++N + ++I+MY KCG++ A QVF+ + K + S + +I G AM+
Sbjct: 333 IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A L S M +G+ PDD+TF+ L+SACSH GL D G +FK+M+ Y I P+ +H
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GR+GL +EAE I M +E + +WG+LL AC+IH+N E+ + I Q+L+ +
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G++ L+SN +A + RW+D ++R + GLKK GCS IE++
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEID 559
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 138/246 (56%), Gaps = 7/246 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F EM K + +P+E+T+ VLS C+ +
Sbjct: 170 IPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM-DVKPDESTMATVLSTCTHSGNVEL 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS+I S LV NA+I++Y KCG++ A +F L YKD+ISW+T+I G A
Sbjct: 229 GRQIHSWIDNHGFGSNLKLV-NALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYA 287
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQ 179
++AL +F M+ G P+DVT ++++ AC+H G +D G + + + I+
Sbjct: 288 YINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITN 347
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQEL 238
T ++DMY + G +E A + + + S A++ +H R D FD + +
Sbjct: 348 TSLQTSLIDMYAKCGNIEAANQ-VFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSR-- 404
Query: 239 VNKKGV 244
+ K G+
Sbjct: 405 MKKDGI 410
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 34/227 (14%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+SW TMI G+A A++++ M + PN T + +C+ A G+ +H+
Sbjct: 44 LSWNTMIRGHALSSDPISALNLYVYM-ISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHA 102
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------------- 106
I +Y L+V V ++I+MY + G V A +VF+ ++
Sbjct: 103 QI-LKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMD 161
Query: 107 -----------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
KD++SW+ +ISG A G ++AL+LF+ M+ V PD+ T ++S C+
Sbjct: 162 KAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCT 221
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
H G V+ G + + + + ++D+Y + G +E A
Sbjct: 222 HSGNVELGRQIHSWIDN-HGFGSNLKLVNALIDLYSKCGEMERAHGL 267
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 188/289 (65%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+ +W +I Y + G +EA+ +F E++ +K A+P+E TLV+ LSAC+ + A+
Sbjct: 329 MPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI + + ++ + ++I+MY KCGD+ A+ VF+ + KD+ WS +I+GLA
Sbjct: 389 GGWIHVYIK-KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLA 447
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G+ A+ LFS M + V P+ VTF ++ ACSH GLV++G F M VY ++P
Sbjct: 448 MHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGV 507
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAGLLEEA I +MP+ SVWGALL AC IH N + + +L+
Sbjct: 508 KHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIE 567
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A +W+ + +R +R +GLKK+ GCS IEV+
Sbjct: 568 LEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVD 616
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 146/286 (51%), Gaps = 50/286 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVSW +MI + + G EEA+ +FQEME T+ +PN T+V VLSAC+ S F
Sbjct: 197 IPRRDVVSWNSMITAFVQGGCPEEALELFQEME-TQNVKPNGITMVGVLSACAKKSDFEF 255
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI R + S + NA+++MY KCG V A ++F+ + KD++SW+T++ G A
Sbjct: 256 GRWVHSYIE-RNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 314
Query: 121 MNG-----------------------------CG--RQALQLF-SLMIINGVFPDDVTFI 148
G CG ++AL+LF L + PD+VT +
Sbjct: 315 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLV 374
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC-----VVDMYGRAGLLEEAEAFI 203
+ +SAC+ G +D G VY I Q C ++DMY + G L++A
Sbjct: 375 STLSACAQLGAMDLG-----GWIHVY-IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVF 428
Query: 204 REMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS 245
+ + VW A++ +H + + +F ++++ V V+
Sbjct: 429 HSVE-RKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVT 473
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 108/219 (49%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ +W T+I YA +++ +F M P++ T ++ A S + L
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT 154
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + + L + N++I+ Y KCG++G+ +VF + +D++SW+++I+
Sbjct: 155 GKAFHGMV-IKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFV 213
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
GC +AL+LF M V P+ +T + ++SAC+ + G + + I
Sbjct: 214 QGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER-NRIGESL 272
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G +E+A+ +MP E + W +L
Sbjct: 273 TLSNAMLDMYTKCGSVEDAKRLFDKMP-EKDIVSWTTML 310
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 194/289 (67%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++V+W+TMI GYA+ ++AV +F+ ++ ++ NE +V+V+S+C+ + AL
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQ-SQGVRANETVMVSVISSCAHLGALEL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ + ++++ ++G A+++MY +CG + A+ VF L +D +SW+ +I+GLA
Sbjct: 270 GERAHDYV-VKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLA 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++L+ F+ M+ G+ P D+TF A++SACSHGGLV++G +F++M + + P+
Sbjct: 329 MHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRL 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEAE F+ +MP++ VWGALL ACRIH+N E+ + + + L+
Sbjct: 389 EHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQ 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A A WE ++R ++ GLKK G S IE++
Sbjct: 449 LLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELD 497
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 117/252 (46%), Gaps = 43/252 (17%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ MI G++ ++A + + ++ + P+ T ++ +C+ + +S G H +I
Sbjct: 87 FNAMIRGHSGSKNPDQAFHFYVQSQR-QGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHI 145
Query: 69 STRYDLSVSNLVGNAVINMYV-------------------------------KCGDVGIA 97
++ V N++++MY KCGDV A
Sbjct: 146 -IKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESA 204
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++F+ + K++++WST+ISG A N +A++LF ++ GV ++ +++IS+C+H
Sbjct: 205 RKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHL 264
Query: 158 GLVDQGL----ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
G ++ G + K T+ I+ +VDMY R G +++A ++P E +
Sbjct: 265 GALELGERAHDYVVKNGMTLNLILG-----TALVDMYARCGSIDKAVWVFEDLP-ERDTL 318
Query: 214 VWGALLNACRIH 225
W AL+ +H
Sbjct: 319 SWTALIAGLAMH 330
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 190/288 (65%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++VVSWTTMI G+++ G E+A+S+F M + + PN+ T+V+ L AC+ I AL
Sbjct: 265 MPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLE-EGVRPNDLTVVSALLACTKIGALQV 323
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+S+ ++ +G A+++MY KCG++ A +VF KD+++WS +I G A
Sbjct: 324 GERIHNYLSSN-GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWA 382
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++GC QALQ F M G+ PD+V F+A+++ACSH G VDQGL F++M Y I P
Sbjct: 383 IHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTM 442
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GRAG L+EA +FI+ MPI ++ +WGAL ACR H+N EM + ++L+
Sbjct: 443 KHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQ 502
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G++ +SN +A RWED ++R ++ G++K G S+IEV
Sbjct: 503 LEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEV 550
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL-SACSSISALSFGQYVH 65
VS M E GF + +F E + +AE L NVL + C + LS +
Sbjct: 177 VSLVDMYVKIGELGF---GLQLFDESPQRNKAE--SILLWNVLINGCCKVGDLSKAASLF 231
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R S N++IN +V+ GD+ A ++F + K+++SW+T+I+G + NG
Sbjct: 232 EAMPERNAGS-----WNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDH 286
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
+AL +F M+ GV P+D+T ++ + AC+ G + G + +S+ + + A
Sbjct: 287 EKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTA- 345
Query: 186 VVDMYGRAGLLEEAEAFIREMPIE--AEWSV--WGALLNAC 222
+VDMY + G ++ A E + WSV WG ++ C
Sbjct: 346 LVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC 386
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 191/286 (66%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++ SW +I G + G EEA+ +++ M K + +PNE TLVNVLSAC+ + AL G+
Sbjct: 292 KNLPSWNAIITGCVQGGLLEEAIDLYRHM-KAQSVKPNEITLVNVLSACAGLGALELGRE 350
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH Y+ R L ++ ++ A+++MY KCG + A +F + KD+ W+ +I GLA +G
Sbjct: 351 VHLYLG-RNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHG 409
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR +L +FS M+ GV P+DVTFI ++SAC+H GLV++G + F +M+ + + P+ +HY
Sbjct: 410 DGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHY 469
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAG L+EA ++ M I + +WGALL+ACRIHRN E+ D I + ++ +
Sbjct: 470 ACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQD 529
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++G L+SN +A + RW+D ++R +++ +KK +GCSW+EV+
Sbjct: 530 PNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVD 575
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 13/231 (5%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISAL 58
MP +R+VV WT MI GY + G E +S+F++M E +PN AT+V +LSACS++
Sbjct: 185 MPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNY 244
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+++ +I + ++ ++ A+I+MY KCGDV A ++F+ ++ K++ SW+ +I+G
Sbjct: 245 EVGRFLSVFIDVN-KIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITG 303
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVY 174
G +A+ L+ M V P+++T + ++SAC+ G ++ G L L + +
Sbjct: 304 CVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLN 363
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
I+ +VDMY + G +++A I E + ++W A++ H
Sbjct: 364 VILATA-----LVDMYAKCGKIDDA-CLIFVKTSEKDVALWNAMILGLAYH 408
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 38/255 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P SW ++I Y G + ++ ++ +M ++ +P+ T VL ACS++ ++ G
Sbjct: 54 PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRS-STKPSNFTFPFVLKACSTLGSVLEG 112
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA- 120
+ +H+++ R V N++I+MY KC + A ++ + ++D +SW+++ISG
Sbjct: 113 EQIHTHV-LRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQ 171
Query: 121 --------------------------MNGCGRQA-----LQLFSLMIING--VFPDDVTF 147
+NG G++ L LF M+++ V P+ T
Sbjct: 172 WGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATM 231
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ L+SACS + G L V +I T ++DMY + G +E+A +
Sbjct: 232 VCLLSACSTLCNYEVGRFL-SVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVS 290
Query: 208 IEAEWSVWGALLNAC 222
+ S W A++ C
Sbjct: 291 CKNLPS-WNAIITGC 304
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++DV W MI G A G ++++VF +M + +PN+ T + VLSAC+ + G+
Sbjct: 392 EKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAG-VQPNDVTFIGVLSACNHSGLVEEGR 450
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISG 118
S ++ ++ LS ++++ + G + A + V NML D I W ++S
Sbjct: 451 VQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSA 507
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 187/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK++V+SWTTMI G + G EEA+ +F M T A+PN+ T V+VL ACS+++ L
Sbjct: 296 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ VH IS + S V +A+INMY KCG++G A ++F+ M + +D++SW+ +I+
Sbjct: 356 GQQVHQIIS-KTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA 414
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G G++A+ F M +G PDDVT++ L+SACSH GLV++GL F + I+
Sbjct: 415 YAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILV 474
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ HYAC+VD+ GRAG L+EA FI + + VWGALL C +H N ++ ++L
Sbjct: 475 REDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKL 534
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + GT+ L+SN +A +W +A ++R +++ GLKK+ GCSWIEV
Sbjct: 535 LEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEV 584
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 17/229 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+SWT MI G ++ G +EA +F M + NV+S + I+ +
Sbjct: 203 MPERDVISWTAMIAGLSKNGRIDEARLLFDRMPER-----------NVVSWNAMITGYAQ 251
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + +L N +I ++ GD+ A ++FN + K++ISW+T+I+G
Sbjct: 252 NLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGC 311
Query: 120 AMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIV 177
G +AL++FS M+ NG P+ TF++++ ACS+ + +G + + +S TVY+
Sbjct: 312 VQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQ-- 369
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIH 225
T + +++MY + G L A + M + + W ++ A H
Sbjct: 370 DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHH 418
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 106/221 (47%), Gaps = 22/221 (9%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K++VV+WT M+GGY +A +F EM PN+ NV+S + I +
Sbjct: 112 KKNVVTWTAMVGGYIRSNKISDAEKLFNEM-------PNK----NVVSWNTMIDGYAQNG 160
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ S + + N+V N V++M +CG + A ++F+ + +D+ISW+ +I+GL+
Sbjct: 161 RIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSK 220
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +A LF M V V++ A+I+ + +D+ L LF+ M +P
Sbjct: 221 NGRIDEARLLFDRMPERNV----VSWNAMITGYAQNLRLDEALDLFERMPE--RDLPS-- 272
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++ + G L A EMP + S W ++ C
Sbjct: 273 -WNTMITGLIQNGDLRRARKLFNEMPKKNVIS-WTTMITGC 311
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 51/233 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + DV++WTT+I GY + G EEA +F ++ K NV++
Sbjct: 78 MREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKK----------NVVTWT-------- 119
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
A++ Y++ + A ++FN + K+++SW+T+I G A
Sbjct: 120 ----------------------AMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYA 157
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ LF M V V++ ++S + G +++ LF M +++ T
Sbjct: 158 QNGRIDSAMYLFEKMPERNV----VSWNTVMSMLAQCGRIEEARRLFDRMPE-RDVISWT 212
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFD 232
A + + G ++EA MP E W A++ + R DE D
Sbjct: 213 AMIAGL----SKNGRIDEARLLFDRMP-ERNVVSWNAMITGYAQNLRLDEALD 260
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 59 SFGQYVHSYIS-TRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
S Y + IS R D +V V N +I K G + A ++F+ + D+I+W+TV
Sbjct: 30 SINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTV 89
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
ISG G +A +LF + + VT+ A++ + LF M
Sbjct: 90 ISGYIKCGMIEEARRLFDRV---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPN--- 143
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNAC-RIHRNDEMFD 232
+ ++D Y + G ++ A +MP W+ ++L C RI +FD
Sbjct: 144 --KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFD 201
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 192/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + +V+SW+ +I G+A +G E+++ +F++M+ K N T+ +VLS C+ ++AL+
Sbjct: 370 LVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAK-VMANCVTISSVLSVCAELAALNL 428
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R +S + LVGN +INMY+KCGD VF+ + +D+ISW+++I G
Sbjct: 429 GRELHGY-AIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYG 487
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G AL+ F+ MI + PD++TF+A++SACSH GLV G LF M T + I P
Sbjct: 488 MHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNV 547
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAGLL+EA +R MPIE VWGALLN+CR++++ ++ + +++
Sbjct: 548 EHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYKDMDIVEETASQILT 607
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
K G+F L+SN +A RW+D+ ++R R GLKK G SWIEV ++
Sbjct: 608 LKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLKKIPGQSWIEVRKKVY 660
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 8/167 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY- 67
W ++I G+ + A+ ++ EM K P+ TL V+ ACSS+ + + VH +
Sbjct: 100 WNSIIRANVSHGYHQHALELYVEMRKLGFL-PDGFTLPLVIRACSSLGSSYLCRIVHCHA 158
Query: 68 --ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R L V N ++ MY K G + A Q+F+ + + ++SW+T++SG A+N
Sbjct: 159 LQMGFRNHLHVVN----ELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDS 214
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
A ++F M + G+ P+ VT+ +L+S+ + GL D+ L LFK M T
Sbjct: 215 LGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRT 261
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 43/198 (21%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V+WT+++ +A G +E + +F+ M +T+ E L VLS C+ ++ + +G+ +H
Sbjct: 234 VTWTSLLSSHARCGLYDETLELFKVM-RTRGIEIGAEALAVVLSVCADMAEVDWGKEIHG 292
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF------------------------- 101
Y+ + V NA+I Y K +G A +VF
Sbjct: 293 YV-VKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCD 351
Query: 102 ----------------NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
+ L ++ISWS VISG A G G ++L+LF M + V + V
Sbjct: 352 EAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCV 411
Query: 146 TFIALISACSHGGLVDQG 163
T +++S C+ ++ G
Sbjct: 412 TISSVLSVCAELAALNLG 429
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 126/291 (43%), Positives = 187/291 (64%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK--TKEAEPNEATLVNVLSACSSISAL 58
MP+R+V+SW+ MI GY G +EA+++F+EM+ + PNE T+ VL+AC + AL
Sbjct: 156 MPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGAL 215
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVIS 117
G++ H+YI + + V ++G A+I+MY KCG V A VF N+ KD+++WS +IS
Sbjct: 216 EHGKWAHAYID-KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMIS 274
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G + + LFS MI GV P+ VTF+A+ AC HGGLV +G + M+ Y I+
Sbjct: 275 GLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSII 334
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P QHY C+VD+YGRAG ++EA ++ MP+E + VWGALL+ R+H + E + ++
Sbjct: 335 PTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKK 394
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L+ + + G + L+SN +A RWED +RD + MG+KK GCS IEV
Sbjct: 395 LIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEV 445
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 18/220 (8%)
Query: 2 PKRDVVSWTTMIGGYAE-----RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56
P + W T+I + + G +S+F M + +P+ T +L + +S S
Sbjct: 20 PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRM-RFHGVQPDFHTFPFLLQSFASPS 78
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
L G+ VH+ I R+ L++ V ++I+MY CG++G A QVF+ + D+ SW+++I
Sbjct: 79 LLHLGRSVHAQI-LRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSII 137
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST--VY 174
+ G A LF++M V +++ +I+ G + L LF+ M V
Sbjct: 138 NANFQAGLVDMARNLFAVMPERNV----ISWSCMINGYVRCGQYKEALALFREMQMLGVN 193
Query: 175 EIVPQTQHYACVVDMYGRAGLLEE---AEAFIRE--MPIE 209
++ P + V+ GR G LE A A+I + MP++
Sbjct: 194 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVD 233
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 187/291 (64%), Gaps = 2/291 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV+W MI + +G E+A + EM K P+E T+V+++ AC+ + L G++
Sbjct: 175 RDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKF 234
Query: 64 VHSYIS--TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+HSY +++++ ++ A+++MY KCG + +A+QVF + +++ +W+ +I GLAM
Sbjct: 235 LHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAM 294
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G A+ LF M + + PDDVTFIAL+ ACSH GLVD+GL +F+AM ++I P+ +
Sbjct: 295 HGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRME 354
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY CVVD+ RA +++A AFI MPI+A +W LL ACR + ++ + I + ++
Sbjct: 355 HYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIEL 414
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + ++SN +AG +W+ A K+R +++ G++K GCSWIE+N I
Sbjct: 415 EPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMI 465
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 10/244 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D TMI GYA EAVS++ M + + + T VL+AC+ + A+
Sbjct: 71 MQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVE-RGVPVDNYTYPFVLAACARLGAVKL 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + + V NA+I Y CG G A VF+ +D+++W+ +I+
Sbjct: 130 GRRFHCEV-LKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHL 188
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV--YEIV 177
G +A L M ++ + PD+VT ++L+ AC+ G +++G L + +EI
Sbjct: 189 NKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEIN 248
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDP 233
+VDMY + G ++ A R M + ++ W AL+ +H + E +FD
Sbjct: 249 CDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT-WNALIGGLAMHGHGEDAISLFDQ 307
Query: 234 IRQE 237
+ +
Sbjct: 308 MEHD 311
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V +W +IGG A G E+A+S+F +ME K P++ T + +L ACS +
Sbjct: 277 MRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDK-LMPDDVTFIALLCACSHAGLVDE 335
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G + + ++ + V+++ + V A+ + NM + + W+T++
Sbjct: 336 GLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGAC 395
Query: 120 AMNG-------CGRQALQL 131
G GR+ ++L
Sbjct: 396 RSGGHFDLAEKIGRRVIEL 414
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 187/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK++V+SWTTMI G + G EEA+ +F M T A+PN+ T V+VL ACS+++ L
Sbjct: 275 MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ VH IS + S V +A+INMY KCG++G A ++F+ M + +D++SW+ +I+
Sbjct: 335 GQQVHQIIS-KTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAA 393
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G G++A+ F M +G PDDVT++ L+SACSH GLV++GL F + I+
Sbjct: 394 YAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILV 453
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ HYAC+VD+ GRAG L+EA FI + + VWGALL C +H N ++ ++L
Sbjct: 454 REDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKL 513
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + GT+ L+SN +A +W +A ++R +++ GLKK+ GCSWIEV
Sbjct: 514 LEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEV 563
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 125/246 (50%), Gaps = 25/246 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI----- 55
MP ++VVSW TMI GYA+ G + A+ +F++M + N T++++L+ C I
Sbjct: 156 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWN--TVMSMLAQCGRIEEARR 213
Query: 56 --------SALSFGQYVHSYISTRYDL----SVSNLVG-NAVINMYVKCGDVGIAIQVFN 102
+S+ + + DL +L N +I ++ GD+ A ++FN
Sbjct: 214 LFDRMPERDVISWTAMIAGLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFN 273
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVD 161
+ K++ISW+T+I+G G +AL++FS M+ NG P+ TF++++ ACS+ +
Sbjct: 274 EMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLG 333
Query: 162 QGLILFKAMS-TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALL 219
+G + + +S TVY+ T + +++MY + G L A + M + + W ++
Sbjct: 334 EGQQVHQIISKTVYQ--DSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGII 391
Query: 220 NACRIH 225
A H
Sbjct: 392 AAYAHH 397
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 26/223 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + DV++WTT+I GY + G EEA +F ++ K NV++ + +
Sbjct: 93 MREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKK----------NVVTWTAMVGGYIR 142
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ ++ N+V N +I+ Y + G + A+ +F + ++++SW+TV+S L
Sbjct: 143 SNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSML 202
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A G +A +LF M V +++ A+I+ GL+D+ L LF+ M +P
Sbjct: 203 AQCGRIEEARRLFDRMPERDV----ISWTAMIA-----GLLDEALDLFERMPE--RDLPS 251
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++ + G L A EMP + S W ++ C
Sbjct: 252 ---WNTMITGLIQNGDLRRARKLFNEMPKKNVIS-WTTMITGC 290
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 59 SFGQYVHSYIS-TRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
S Y + IS R D +V V N +I K G + A ++F+ + D+I+W+TV
Sbjct: 45 SINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTV 104
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
ISG G +A +LF + + VT+ A++ + LF M
Sbjct: 105 ISGYIKCGMIEEARRLFDRV---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPN--- 158
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGALLNAC-RIHRNDEMFD 232
+ ++D Y + G ++ A +MP W+ ++L C RI +FD
Sbjct: 159 --KNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFD 216
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 193/289 (66%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V WT MI G+ A+ F+ M+ + PNE T+V VLSACS + AL G++
Sbjct: 198 KDTVCWTAMIDGFVRNEEMNRALEAFRGMQ-GENVRPNEFTIVCVLSACSQLGALEIGRW 256
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHSY+ ++++ ++ VGNA+INMY +CG + A VF+ + +D+I+++T+ISGL+MNG
Sbjct: 257 VHSYMR-KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
RQA++LF +MI + P +VTF+ +++ACSHGGLVD G +F +M+ Y + PQ +HY
Sbjct: 316 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHY 375
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GR G LEEA IR M + + + G LL+AC++H+N E+ + + + L ++
Sbjct: 376 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQ 435
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+S+ +A + +W++A ++R +++ G++K+ GCS IEVN I
Sbjct: 436 ADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 484
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T +I G+ G +A+ ++ M P+ + ++L AC S AL G+ V
Sbjct: 94 NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS-ILPDNYLMASILKACGSQLALREGREV 152
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----YKDMISWSTVISGLA 120
HS + + LS + LV ++ +Y KCG++G A +VF + KD + W+ +I G
Sbjct: 153 HSR-ALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFV 211
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL+ F M V P++ T + ++SACS G ++ G + M +EI
Sbjct: 212 RNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRK-FEIELNL 270
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
+++MY R G ++EA+ EM
Sbjct: 271 FVGNALINMYSRCGSIDEAQTVFDEM 296
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 10/146 (6%)
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KC + A ++F ++ ++ +I G +G A+QL+S M+ + + PD+ +
Sbjct: 76 KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMP 207
++ AC + +G + S ++ + ++++YG+ G L +A EMP
Sbjct: 136 ILKACGSQLALREGR---EVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP 192
Query: 208 ---IEAEWSVWGALLNACRIHRNDEM 230
+ + W A+++ RN+EM
Sbjct: 193 EDVVAKDTVCWTAMIDG--FVRNEEM 216
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+++ TMI G + G +A+ +F+ M + P T V VL+ACS + F
Sbjct: 296 MKDRDVITYNTMISGLSMNGKSRQAIELFRVM-IGRRLRPTNVTFVGVLNACSHGGLVDF 354
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + ++ Y + ++++ + G + A + M D I T++S
Sbjct: 355 GFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 414
Query: 120 AMN 122
M+
Sbjct: 415 KMH 417
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 188/292 (64%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
M R++VSWT MI GY + GF E+A+ +F EM + E +PN T+V+VL AC+ +AL
Sbjct: 199 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVIS 117
G+ +H + + L +++ V A+ MY KC + A F+M+A K++I+W+T+I+
Sbjct: 259 RGRRIHDF-ANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMIT 317
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A +GCG +A+ +F M+ GV PD VTF+ L+S CSH GL+D GL F M T++ +
Sbjct: 318 AYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVE 377
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYACVVD+ GRAG L EA+ I +MP++A SVWGALL ACR HRN E+ + +
Sbjct: 378 PRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARR 437
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L + + G + L+SN +A A WE+ K+R ++ G+KK GCSWIE+N
Sbjct: 438 LFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEIN 489
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 34/153 (22%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC------------ 91
TL VL +C+ +S + G+ VH R L VG ++I+MYVKC
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQ-GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDK 167
Query: 92 -------------------GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
G++G+A +F + +++++SW+ +ISG NG QAL LF
Sbjct: 168 MIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLF 227
Query: 133 SLMIING--VFPDDVTFIALISACSHGGLVDQG 163
M+ +G + P+ VT ++++ AC+ +++G
Sbjct: 228 DEMLQDGSEMKPNWVTIVSVLPACAQSAALERG 260
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 184/288 (63%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEMEK-TKEAEPNEATLVNVLSACSSISALS 59
PK RDVV+WT MIGGYA+ G A+ +F M K K +PN+ TL L AC+ ++AL
Sbjct: 571 PKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALR 630
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ VH+Y+ + SV V N +I+MY K GDV A VF+ + ++ +SW+++++G
Sbjct: 631 FGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGY 690
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G AL++F M + PD +TF+ ++ ACSH G+VD G+ F MS + + P
Sbjct: 691 GMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPG 750
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD++GRAG L EA I EMP+E VW ALL+ACR+H N E+ + L+
Sbjct: 751 PEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLL 810
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G++ L+SN +A A RW+D +IR ++R G+KK+ GCSWI+
Sbjct: 811 ELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQ 858
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 135/262 (51%), Gaps = 29/262 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WT +I GYA+RG EA+ VF++M + PN TLV++LSAC S+ AL G+
Sbjct: 464 DVVTWTAVITGYAQRGQGCEALDVFRQMCDCG-SRPNVVTLVSLLSACVSVGALLHGKET 522
Query: 65 HSYISTRYDLSVSN--------LVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWST 114
H Y + ++ L++ V N +I+MY KC +A ++F+ ++ K D+++W+
Sbjct: 523 HCY-AIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTV 581
Query: 115 VISGLAMNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQG-----LILF 167
+I G A +G ALQLFS M + + P+D T + AC+ + G +L
Sbjct: 582 MIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR 641
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
+V V C++DMY ++G ++ A+ MP S W +L+ +H
Sbjct: 642 NFYGSVMLFVAN-----CLIDMYSKSGDVDTAQIVFDNMPQRNAVS-WTSLMTGYGMHGR 695
Query: 228 DE----MFDPIRQELVNKKGVS 245
E +FD +R+ + G++
Sbjct: 696 GEDALRVFDEMRKVPLVPDGIT 717
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 94/167 (56%), Gaps = 1/167 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VSW +++ Y A+++F +M P+ +LVN+L AC+S++A G+
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + S R L VGNAV++MY KCG + A +VF + +KD++SW+ +++G + G
Sbjct: 386 VHGF-SIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAG 444
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
AL LF M + D VT+ A+I+ + G + L +F+ M
Sbjct: 445 RLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQM 491
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 12/237 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I G + +++++M K+ P+ T V AC+++S+LS G +H+ +
Sbjct: 227 WNQLIRRALHLGSPRDVFTLYRQM-KSLGWTPDHYTFPFVFKACANLSSLSLGASLHATV 285
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG 125
S R + + V NAV++MY KCG + A +F+ L ++ D++SW++V+S
Sbjct: 286 S-RSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDA 344
Query: 126 RQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
AL LF M + PD ++ + ++ AC+ +G + S +V
Sbjct: 345 NTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQV-HGFSIRSGLVDDVFVGN 403
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQE 237
VVDMY + G +EEA + M + S W A++ A R+ +F+ + +E
Sbjct: 404 AVVDMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTGYSQAGRLEHALSLFERMTEE 459
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSWT+++ GY G E+A+ VF EM K P+ T + VL ACS +
Sbjct: 675 MPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLV-PDGITFLVVLYACSHSGMVDH 733
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM-ISWSTVISGL 119
G + +S + + +++++ + G +G A+++ N + + + W ++S
Sbjct: 734 GINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSAC 793
Query: 120 AMN 122
++
Sbjct: 794 RLH 796
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 193/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW+ MI GYA+ G EA+ +F +M+ PN +V L+AC+ + AL
Sbjct: 205 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQ-IAGFRPNHGAIVGALTACAFLGALDQ 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ R + + ++G A+I+MY KCG V A +VF+ + +D+ +++++ISGLA
Sbjct: 264 GRWIHAYVD-RNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A+++F+ M GV P++VTFI L+SACS GLV++GL +FK+M+ +Y I P
Sbjct: 323 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG+LE+A+ +REMP+E + V GALLNACR+H + E+ + L
Sbjct: 383 QHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A++WED K+R + +KK GCS IEV+ ++F
Sbjct: 443 RSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVF 495
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 35/270 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R W TM+ + ++ +S+++ M T PN T +L AC+ +S LSF
Sbjct: 73 LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSF 131
Query: 61 GQYVHS--------------------YISTR--------YDLSVSN--LVGNAVINMYVK 90
G +H+ Y S +D SV+ + AVIN Y K
Sbjct: 132 GILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAK 191
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G V +A Q+F+ + K+ +SWS +I+G A G R+AL+LF+ M I G P+ +
Sbjct: 192 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 251
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---P 207
++AC+ G +DQG + + ++ + A ++DMY + G +E A EM
Sbjct: 252 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTA-LIDMYAKCGCVETACRVFDEMLDRD 310
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
+ A S+ L N EMF ++ E
Sbjct: 311 VFAFTSLISGLANHGHSATAIEMFTRMQNE 340
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 191/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTT+IGGYA+ EEAV VF+ M+ + EP+ L++VLSAC + A+
Sbjct: 171 MPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQ-VEGIEPDGVALLSVLSACGDLGAVDL 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + N++I+MY+KCG + A++VF + K +++W+T+I+G A
Sbjct: 230 GEWVHRFV-VRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFA 288
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G QA+++F M + P+DVTF+A++SACSH GL D G F M + Y I PQ
Sbjct: 289 LHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPQV 348
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA+ +++MP++A ++WGALL A R H + ++ + L+
Sbjct: 349 EHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAASRTHGDADLGEEALVHLIE 408
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN FA +RW+D +K+R ++ GL+ G S IEV+
Sbjct: 409 LEPSNSGNYILLSNIFAEQERWDDVSKLRKAMKERGLRNVPGASSIEVD 457
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVF 101
A+LV + C ++V S ++++V ++V N +I YVK GD+ A ++F
Sbjct: 118 ASLVQLYCTC---------RHVADARSVFHEMAVRDVVAWNVMIAGYVKAGDLAHARELF 168
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + ++++SW+TVI G A +A+++F M + G+ PD V ++++SAC G VD
Sbjct: 169 DAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAVD 228
Query: 162 QG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G + F + + +P ++DMY + G +E+A M E W L+
Sbjct: 229 LGEWVHRFVVRRGLRQEIPLMN---SIIDMYMKCGCIEKAVEVFEGME-EKSVVTWTTLI 284
Query: 220 NACRIH----RNDEMFDPIRQE 237
+H + EMF + +E
Sbjct: 285 AGFALHGLGLQAVEMFRRMERE 306
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 118/306 (38%), Positives = 201/306 (65%), Gaps = 17/306 (5%)
Query: 1 MPKRDVVSWTTMIGG-------------YAERGFCEEAVSVFQEMEKTKEAEPNEATLVN 47
MP+R+VV+WT+MI G Y +GF EA+++F M++ + P+ ++++
Sbjct: 144 MPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQR-EGVRPSFPSVIS 202
Query: 48 VLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
VLS C S+++L G+ VHS + +++D+ + V + +I MY+KCGD+ A +VF+ +
Sbjct: 203 VLSVCGSLASLDHGRQVHSQLVRSQFDIDI--YVSSVLITMYIKCGDLVTAKRVFDRFSS 260
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
KD++ W+++I+G A +G G +AL++F M + + PD++TFI ++SACS+ G V +GL +
Sbjct: 261 KDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEI 320
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
F++M + Y++ P+T+HYAC+VD+ GRAG L EA I MP+EA+ VWGALL ACR H+
Sbjct: 321 FESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHK 380
Query: 227 NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
N ++ + ++L+ + + G + L+SN ++ RW+D ++R +R L+K GCSWI
Sbjct: 381 NLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWI 440
Query: 287 EVNPSI 292
EV+ +
Sbjct: 441 EVDKKV 446
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT MI GY + G EEA +F M E N + +L +
Sbjct: 51 MPERNVVSWTAMIRGYVQEGLIEEAELLFWRM-----PERNVVSWTVMLGGLIEDGRVDE 105
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------W 112
+ + + + ++ +N++ G ++ ++ + N++A+ MIS W
Sbjct: 106 ARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTW 165
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
ST+I G +AL LFSLM GV P + I+++S C +D G
Sbjct: 166 STMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHG 216
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A ++F+ + + ISW+ ++SG NG +A ++F M V V++ A+I
Sbjct: 13 ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV----VSWTAMIRGYVQ 68
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG--RAGLLEEAEAFIREMPIE---AE 211
GL+++ +LF M P+ + V + G G ++EA MP++ A
Sbjct: 69 EGLIEEAELLFWRM-------PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121
Query: 212 WSVWGALLNACRIHRNDEMFDPIRQELV 239
++ L + R+ E+FD + Q V
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNV 149
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 249 bits (637), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 189/290 (65%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
+ +R+VV+WT MIGG+A+ G +A+ +F EM + PN T+ +L AC+ ++A+
Sbjct: 481 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 540
Query: 60 FGQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ RY+ S + V N +I+MY KCGDV A VF+ ++ K ISW+++++
Sbjct: 541 IGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 599
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +AL +F M G PDD+TF+ ++ ACSH G+VDQGL F +MS Y +
Sbjct: 600 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 659
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC +D+ R+G L++A +++MP+E VW ALL+ACR+H N E+ + +
Sbjct: 660 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 719
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
LV + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 720 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 769
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 52/255 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F +M EK + ++VN+L AC S+ A+
Sbjct: 230 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 289
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------- 111
+ VH + R VGNA+I+ Y KCG + A++VFNM+ +KD++S
Sbjct: 290 QTKEVHGN-AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348
Query: 112 ---------------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
W+ VI+G + GC +AL LF MI +G P+
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH----------YACVVDMYGRAG 194
VT I+++SAC+ G QG + A S ++ Y ++DMY +
Sbjct: 409 VTIISVLSACASLGAFSQGTEI-HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467
Query: 195 LLEEAEAFIREMPIE 209
+ A + ++P+E
Sbjct: 468 SFKAARSIFDDIPLE 482
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 67/295 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK----------------------TKEA 38
M +DVVSW M+ GY++ G E A +F+ M K + EA
Sbjct: 333 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 392
Query: 39 ------------EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-------- 78
PN T+++VLSAC+S+ A S G +H+Y L++ N
Sbjct: 393 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 452
Query: 79 -LVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
+V NA+I+MY KC A +F+ L +++++W+ +I G A G AL+LF M
Sbjct: 453 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 512
Query: 136 IIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--------C 185
I GV P+ T ++ AC+H + G ++ V + Y C
Sbjct: 513 ISEPYGVAPNAYTISCILMACAHLAAIRIG-------KQIHAYVLRHHRYESSAYFVANC 565
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDPIRQ 236
++DMY + G ++ A M ++ S W +++ +H R E +FD +R+
Sbjct: 566 LIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 619
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 34/213 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W +I + ++G + A++V M + P+ TL +VL AC + + G H
Sbjct: 128 VWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDHFTLPHVLKACGELPSYRCGSAFHG 186
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG 123
I + + NA++ MY +CG + A +F+ + + D+ISW++++S +
Sbjct: 187 LICCN-GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSS 245
Query: 124 CGRQALQLFSLMII------NGVFPDDVTFIALISACS-----------HGGLVDQGLIL 166
AL LFS M + D ++ + ++ AC HG + G
Sbjct: 246 NAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF- 304
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
P ++D Y + GL+E A
Sbjct: 305 -----------PDVFVGNALIDAYAKCGLMENA 326
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+G V+ Y+ CG A+ V + + W+ +I G A+ + M+ G
Sbjct: 98 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157
Query: 140 VFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGR 192
PD T ++ AC G GLI ++ + C +V MY R
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGF--------ESNVFICNALVAMYSR 209
Query: 193 AGLLEEAEAFIREM 206
G LEEA E+
Sbjct: 210 CGSLEEASMIFDEI 223
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 122/293 (41%), Positives = 193/293 (65%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW+ MI GYA+ G EA+ +F +M+ PN +V L+AC+ + AL
Sbjct: 180 MPEKNAVSWSAMITGYAQIGLFREALELFNDMQ-IAGFRPNHGAIVGALTACAFLGALDQ 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ R + + ++G A+I+MY KCG V A +VF+ + +D+ +++++ISGLA
Sbjct: 239 GRWIHAYVD-RNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A+++F+ M GV P++VTFI L+SACS GLV++GL +FK+M+ +Y I P
Sbjct: 298 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 357
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG+LE+A+ +REMP+E + V GALLNACR+H + E+ + L
Sbjct: 358 QHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAE 417
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A++WED K+R + +KK GCS IEV+ ++F
Sbjct: 418 RSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVF 470
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 35/270 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R W TM+ + ++ +S+++ M T PN T +L AC+ +S LSF
Sbjct: 48 LPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFL-PNNYTFSFLLQACAQLSDLSF 106
Query: 61 GQYVHS--------------------YISTR--------YDLSVSN--LVGNAVINMYVK 90
G +H+ Y S +D SV+ + AVIN Y K
Sbjct: 107 GILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAK 166
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G V +A Q+F+ + K+ +SWS +I+G A G R+AL+LF+ M I G P+ +
Sbjct: 167 SGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGA 226
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---P 207
++AC+ G +DQG + + ++ + A ++DMY + G +E A EM
Sbjct: 227 LTACAFLGALDQGRWIHAYVDRNRMVLDRILGTA-LIDMYAKCGCVETACRVFDEMLDRD 285
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
+ A S+ L N EMF ++ E
Sbjct: 286 VFAFTSLISGLANHGHSATAIEMFTRMQNE 315
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 182/293 (62%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSW MI GYA+ +A+ +F++M+ PN+ TLV+VLSAC+ + AL
Sbjct: 250 MPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 309
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H +I R + V +GNA+ +MY KCG V A VF+ + +D+ISWS +I GLA
Sbjct: 310 GKWIHRFIR-RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLA 368
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G +A F+ MI +G+ P+D++F+ L++AC+H GLVD+GL F M VY I P+
Sbjct: 369 MYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKI 428
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ RAG L++AE+ I MP++ VWGALL CRI+++ E + + ++
Sbjct: 429 EHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILE 488
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G+ ++N +A R +DA R +R K GCSWIE+N S++
Sbjct: 489 LDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 541
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 66/266 (24%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQ-EMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ ++ ++ +++ +S F ++ P+E T +VL AC+ ++ + GQ
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--------------- 108
VH ++ T+Y + V N+++++Y K G IA ++F+ + +D
Sbjct: 149 VHCFV-TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207
Query: 109 ----------------MISWSTVISGLAMNGCGRQALQLFSLMIIN-------------- 138
++SWST+ISG A G +A QLF M +
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQ 267
Query: 139 ------------------GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G+ P+DVT ++++SAC+H G +D G + + + V
Sbjct: 268 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 327
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
A + DMY + G + EA+ EM
Sbjct: 328 LGNA-LADMYAKCGCVLEAKGVFHEM 352
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 190/294 (64%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K D VSW+ MIGGY G +A+++F+EM+ K P+E T+V+VLSAC+ + AL
Sbjct: 75 MYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQ-IKGVCPDEITMVSVLSACTGLGALEL 133
Query: 61 GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++V SY+ R +V + NA+I+M+ KCGDV A +F + ++++SW++VI GL
Sbjct: 134 GKWVESYVEKERVQKNVE--LSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +A+ +F M+ +GV PDDV FI L+SACSH GLVD+G F +M + IVP+
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPK 251
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM RAGL++EA F++EMPI+ VW L+NACR H ++ + I ++L+
Sbjct: 252 IEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLI 311
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+SN +A WE +IR+ + G+KK G + IE++ I+
Sbjct: 312 RNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIY 365
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC----GDVG 95
PN+ T VL AC+ I L+ G+ VH + ++ V N +++MY C G +
Sbjct: 8 PNKFTYPFVLKACAGIGNLNLGKSVHGSV-MKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +VF+ + D +SWS +I G G A+ LF M I GV PD++T ++++SAC+
Sbjct: 67 FARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACT 126
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
G ++ G + ++ + + ++DM+ + G +++A R M E W
Sbjct: 127 GLGALELGKWV-ESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMR-ERNIVSW 184
Query: 216 GALLNACRIH 225
+++ +H
Sbjct: 185 TSVIGGLAMH 194
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 189/290 (65%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
+ +R+VV+WT MIGG+A+ G +A+ +F EM + PN T+ +L AC+ ++A+
Sbjct: 474 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 533
Query: 60 FGQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ RY+ S + V N +I+MY KCGDV A VF+ ++ K ISW+++++
Sbjct: 534 IGKQIHAYVLRHHRYE-SSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 592
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +AL +F M G PDD+TF+ ++ ACSH G+VDQGL F +MS Y +
Sbjct: 593 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 652
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC +D+ R+G L++A +++MP+E VW ALL+ACR+H N E+ + +
Sbjct: 653 PRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 712
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
LV + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 713 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 762
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 52/255 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F +M EK + ++VN+L AC S+ A+
Sbjct: 223 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 282
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------- 111
+ VH + R VGNA+I+ Y KCG + A++VFNM+ +KD++S
Sbjct: 283 QTKEVHGN-AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341
Query: 112 ---------------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
W+ VI+G + GC +AL LF MI +G P+
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH----------YACVVDMYGRAG 194
VT I+++SAC+ G QG + A S ++ Y ++DMY +
Sbjct: 402 VTIISVLSACASLGAFSQGTEI-HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460
Query: 195 LLEEAEAFIREMPIE 209
+ A + ++P+E
Sbjct: 461 SFKAARSIFDDIPLE 475
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 131/295 (44%), Gaps = 67/295 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK----------------------TKEA 38
M +DVVSW M+ GY++ G E A +F+ M K + EA
Sbjct: 326 MEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEA 385
Query: 39 ------------EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-------- 78
PN T+++VLSAC+S+ A S G +H+Y L++ N
Sbjct: 386 LNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDED 445
Query: 79 -LVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
+V NA+I+MY KC A +F+ L +++++W+ +I G A G AL+LF M
Sbjct: 446 LMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEM 505
Query: 136 IIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--------C 185
I GV P+ T ++ AC+H + G ++ V + Y C
Sbjct: 506 ISEPYGVAPNAYTISCILMACAHLAAIRIG-------KQIHAYVLRHHRYESSAYFVANC 558
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFDPIRQ 236
++DMY + G ++ A M ++ S W +++ +H R E +FD +R+
Sbjct: 559 LIDMYSKCGDVDTARHVFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRK 612
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 88/213 (41%), Gaps = 34/213 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W +I + ++G + A++V M + P+ TL +VL AC + + G H
Sbjct: 121 VWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRPDHFTLPHVLKACGELPSYRCGSAFHG 179
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG 123
I + + NA++ MY +CG + A +F+ + + D+ISW++++S +
Sbjct: 180 LICCN-GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSS 238
Query: 124 CGRQALQLFSLMII------NGVFPDDVTFIALISACS-----------HGGLVDQGLIL 166
AL LFS M + D ++ + ++ AC HG + G
Sbjct: 239 NAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTF- 297
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
P ++D Y + GL+E A
Sbjct: 298 -----------PDVFVGNALIDAYAKCGLMENA 319
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 15/134 (11%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+G V+ Y+ CG A+ V + + W+ +I G A+ + M+ G
Sbjct: 91 LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150
Query: 140 VFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGR 192
PD T ++ AC G GLI ++ + C +V MY R
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGF--------ESNVFICNALVAMYSR 202
Query: 193 AGLLEEAEAFIREM 206
G LEEA E+
Sbjct: 203 CGSLEEASMIFDEI 216
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 127/292 (43%), Positives = 179/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW T+I GY + G EAV + M+K + + + T V+VL A S + AL
Sbjct: 332 MPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQ 391
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ +S + L+V VG +I++Y KCG + A+ +F + + W+ +ISGL
Sbjct: 392 GMRMHA-LSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLG 450
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LFS M G+ PD VTF++L++ACSH GLVDQG F M Y+IVP
Sbjct: 451 VHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIA 510
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+ DM GRAG L+EA FI+ MPI+ + +VWGALL ACRIH N EM Q L
Sbjct: 511 KHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFE 570
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + LMSN +A +W+ +++R +RR L+K G S IEV S+
Sbjct: 571 LDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSV 622
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 131/251 (52%), Gaps = 10/251 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+V+W ++I G +RG A+ +FQ M + P+ TLV++ SA +
Sbjct: 230 MECRDLVTWNSIISGCEQRGQTAAALKMFQGM-RGSGVSPDVLTLVSLASAIAQGGDGRS 288
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H Y+ R +D+ + GNA+++MY K ++ A ++F+ + +D +SW+T+I+G
Sbjct: 289 AKSLHCYVMRRGWDVD-DIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGY 347
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +A++ + M + G+ TF++++ A SH G + QG+ + A+S +
Sbjct: 348 MQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM-HALSIKIGLNV 406
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
C++D+Y + G L EA +MP + W A+++ +H + +F +
Sbjct: 407 DVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRST-GPWNAIISGLGVHGHGAEALTLFSRM 465
Query: 235 RQELVNKKGVS 245
+QE + V+
Sbjct: 466 QQEGIKPDHVT 476
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV +W M+ G EAV +F M A + T+ +VL C +
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAG-DTVTVSSVLPMCVLLGDQVL 187
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y + ++ L V NA+I++Y K G + A VF+ + +D+++W+++ISG
Sbjct: 188 ALVMHVY-AVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCE 246
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEI 176
G AL++F M +GV PD +T ++L SA + GG L + V +I
Sbjct: 247 QRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDI 306
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +VDMY + +E A+ MP++ S W L+
Sbjct: 307 IAGN----AIVDMYAKLSNIEAAQRMFDSMPVQDSVS-WNTLITG 346
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
S ++++ Y++ G + A +VF+ ++ +D+ +W+ ++SGL N +A+ LF M+
Sbjct: 102 SVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMV 161
Query: 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAG 194
GV D VT +++ C G DQ L L + V + + + + C ++D+YG+ G
Sbjct: 162 GEGVAGDTVTVSSVLPMCVLLG--DQVLALVMHVYAVKHGLDK-ELFVCNALIDVYGKLG 218
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNAC 222
+LEEA+ M + W ++++ C
Sbjct: 219 MLEEAQCVFHGMECR-DLVTWNSIISGC 245
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 182/292 (62%), Gaps = 3/292 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ +VVSW+ +I G+A +G +EA+ +F+ M+ K N T+ VLS C+ ++AL G+
Sbjct: 280 RPNVVSWSAIIDGFASKGREKEALELFRRMQHAK-ILANAVTISTVLSLCAELAALHLGR 338
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H ++ R + + LVGN ++NMY KCG + +F KD+ISW+++I+G M+
Sbjct: 339 EIHGHV-VRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMH 397
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G AL+ F MI G PD VTF+A++S+CSH GLV +G LF M Y I PQ +H
Sbjct: 398 GLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEH 457
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN-K 241
YAC+VD+ GRAGLL EA ++ MP+ VWGALLN+CR+H N E+ + L N
Sbjct: 458 YACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNNTEIAEETASHLFNLS 517
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ L+SN +A + RWED+ ++R + GLKK G SWI+V +++
Sbjct: 518 HRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWIKVEKNVY 569
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 91/170 (53%), Gaps = 6/170 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++V+WT++I YA G+ EEA+ +F M + K E + L V+S C+ + A + +
Sbjct: 142 NLVTWTSLISSYARSGWHEEAMELFGLM-RMKGVEVSGEALAVVISICADLGAFVRAKII 200
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y + + + V +A+I +Y K GDV A +F + K + SW+ +I+ A G
Sbjct: 201 HEY-AVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGL 259
Query: 125 GRQALQLFSLMIING----VFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+AL++FS + +G + P+ V++ A+I + G + L LF+ M
Sbjct: 260 CDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRM 309
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
V+ AC+ + + G+ +H ++ VGN +I MY K G + A +F+ ++ +
Sbjct: 48 VIRACAYMGSFILGKTIHGHV-LEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDRMSVR 106
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
ISW+T++S A N AL++F M G+ P+ VT+ +LIS+ + G ++ + LF
Sbjct: 107 SYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEAMELF 166
Query: 168 KAM 170
M
Sbjct: 167 GLM 169
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV W ++ GY + +EA+++F EM+K+K +PNE T+VN+LSACS + AL
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSK-VDPNEITMVNLLSACSQLGALEM 374
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI R+ L +S +G ++++MY KCG++ AI VFN + ++ ++W+++I GLA
Sbjct: 375 GMWVHHYID-RHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLA 433
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A++ F MI G+ PD++TFI ++SAC H GLV+ G F M Y + +
Sbjct: 434 NHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKM 493
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C++D+ GRAG L+EAE + MP++ + VWGAL ACR+H N + + +LV
Sbjct: 494 KHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVE 553
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++N +A A+ + A+K+R +R +G++K GCS IE+N
Sbjct: 554 LDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 602
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 119/240 (49%), Gaps = 34/240 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSF 60
P RDVVSW T+IGGY G EA+ +F + E P+E T++ +S C+ + L
Sbjct: 183 PVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLEL 242
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + L+ NAV++MYVKCG + +A VF ++ + +SW+T+I G A
Sbjct: 243 GKRLHEFVDNKGVRCTVRLM-NAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHA 301
Query: 121 -------------------------------MNGCGRQALQLFSLMIINGVFPDDVTFIA 149
N G++A+ LF M + V P+++T +
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVN 361
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
L+SACS G ++ G+ + + +++ +VDMY + G +++A E+P++
Sbjct: 362 LLSACSQLGALEMGMWVHHYIDR-HKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQ 420
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 4/181 (2%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
+ +++ + + A P+ T ++ AC+ + S+G V ++ + S V N
Sbjct: 102 RHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQ-KLGFSADVFVVN 160
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--V 140
A ++ + G + A ++F+ +D++SW+T+I G +G R+AL+LF + +G V
Sbjct: 161 AAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAV 220
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
PD+VT I +S C+ G ++ G L + + + + V+DMY + G LE A
Sbjct: 221 RPDEVTVIGAVSGCAQMGDLELGKRLHEFVDN-KGVRCTVRLMNAVMDMYVKCGSLELAN 279
Query: 201 A 201
+
Sbjct: 280 S 280
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 190/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD VSWT MI GY EA+++F+EM+ + +P+E T+V++L+AC+ + AL
Sbjct: 300 IPERDYVSWTAMIDGYLRMNRFIEALALFREMQMS-NVKPDEFTMVSILTACAHLGALEL 358
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V +YI + + VGNA+I+MY KCG+VG A +VF + +KD +W+ +I GLA
Sbjct: 359 GEWVKTYID-KNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLA 417
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +AL +FS MI + PD++T+I ++ AC+H G+V++G F +M+ + I P
Sbjct: 418 INGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNV 477
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG LEEA I MP++ VWG+LL ACR+H+N ++ + ++++
Sbjct: 478 THYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILE 537
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+ N +A RWE+ ++R + G+KK GCS +E+N +++
Sbjct: 538 LEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 132/257 (51%), Gaps = 37/257 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VV+W M+ GY +++ +F EMEK + PN TLV +LSACS + L G+++
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEK-RGVSPNSVTLVLMLSACSKLKDLEGGKHI 230
Query: 65 HSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA--- 120
+ YI+ + NL+ N +I+M+ CG++ A VF+ + +D+ISW+++++G A
Sbjct: 231 YKYING--GIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIG 288
Query: 121 -----------------------MNGCGR-----QALQLFSLMIINGVFPDDVTFIALIS 152
++G R +AL LF M ++ V PD+ T +++++
Sbjct: 289 QIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILT 348
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
AC+H G ++ G + K I T ++DMY + G + +A+ +EM + ++
Sbjct: 349 ACAHLGALELGEWV-KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407
Query: 213 SVWGALLNACRIHRNDE 229
+ W A++ I+ + E
Sbjct: 408 T-WTAMIVGLAINGHGE 423
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 33/221 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + W TMI GY+ + VS++ M + +P+ T +L + AL +
Sbjct: 67 IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLAS-NIKPDRFTFPFLLKGFTRNMALQY 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + ++ + ++ + V A I+M+ C V +A +VF+M ++++W+ ++SG
Sbjct: 126 GKVLLNH-AVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYN 184
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS---------------HGGLVDQGLI 165
+++ LF M GV P+ VT + ++SACS +GG+V++ LI
Sbjct: 185 RVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLI 244
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
L + +DM+ G ++EA++ M
Sbjct: 245 LENVL----------------IDMFAACGEMDEAQSVFDNM 269
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGDVGIAIQVFNM 103
+++L C S+ L + +HS+ + + LS L VI + G + A QVF+
Sbjct: 11 ISLLEKCKSMYQL---KQIHSH-TIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDA 66
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ + W+T+I G + + + ++ LM+ + + PD TF L+ + + G
Sbjct: 67 IPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYG 126
Query: 164 LILF 167
+L
Sbjct: 127 KVLL 130
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 189/292 (64%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW TMI Y +RG EA+ ++++M+ A P+EATLV VLSAC I L+
Sbjct: 238 MPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPA-PDEATLVPVLSACGRIGDLTV 296
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +L+ N++++MY KCG V AI++F + ++++SW+ +I GLA
Sbjct: 297 GKMVHLYIRDNIHNPDISLI-NSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLA 355
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ F M+ N PD +TF+AL+S+CSHGGL++ G F++M VY + +
Sbjct: 356 MHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEV 414
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G LE+A I+EMP++ + VWGALL ACRIH N ++ + ++L+
Sbjct: 415 EHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLE 474
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G+S G F L+SN ++WED ++R ++ G +K G S IE+N SI
Sbjct: 475 LEGISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSI 526
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 36/238 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW +MIGGYA+ G EA ++F EM + + +E TL ++L ACS L F
Sbjct: 106 MAGRNVVSWNSMIGGYAQAGDTREACALFGEMRR-QGFLGDEFTLASLLLACSQEGNLEF 164
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWS------- 113
G+ VH + V ++G A+++MY KCGD+ +A + F M+ K ++SW+
Sbjct: 165 GRLVHCLMLVSGS-PVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQT 223
Query: 114 ------------------------TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
T+IS G +AL L+ M +G PD+ T +
Sbjct: 224 KHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVP 283
Query: 150 LISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++SAC G L ++ ++ P ++DMY + G ++ A REM
Sbjct: 284 VLSACGRIGDLTVGKMVHLYIRDNIHN--PDISLINSLLDMYAKCGQVDTAIRLFREM 339
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 4/221 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V + T+ Y EA+ + + M + + PNE TL V+ AC+ A V
Sbjct: 9 DRVMYNTITRAYCNSDCPREALRLHRCMLR-RGVLPNEFTLPFVVKACTRAQAWDNALAV 67
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ + V NA+++ Y G +G + + F+ +A ++++SW+++I G A G
Sbjct: 68 HG-VALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGD 126
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
R+A LF M G D+ T +L+ ACS G ++ G ++ M V A
Sbjct: 127 TREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGA 186
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G L A MPI++ S W ++L A H
Sbjct: 187 -LVDMYSKCGDLCMARRCFEMMPIKSVVS-WTSMLCAQTKH 225
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ + D + ++T+ + C R+AL+L M+ GV P++ T ++ AC+
Sbjct: 1 MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
D L + ++ V Q ++ Y AG L ++ F EM
Sbjct: 61 WDNALAV-HGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEM 106
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 188/290 (64%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+
Sbjct: 284 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDI 342
Query: 61 GQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI R ++ ++ + ++I+MY KCGD+ A QVFN + +K + SW+ +I G
Sbjct: 343 GRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 402
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G + +FS M NG+ PDD+TF+ L+SACSH G++D G +F++M+ Y++ P+
Sbjct: 403 AMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPK 462
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + Q L+
Sbjct: 463 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLI 522
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + R + G+KK GCS IE++
Sbjct: 523 KIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F++M KT P+E+T+V V+SAC+ ++
Sbjct: 183 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIEL 241
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I S +V NA+I++Y KCG++ A +F L YKD+ISW+T+I G
Sbjct: 242 GRQVHSWIDDHGFGSNLKIV-NALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANA 360
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A + + S W A++ +H R D FD
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFD 413
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 35/246 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ A GQ +
Sbjct: 55 NLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQI 113
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN------MLAY------------ 106
H ++ + + V ++I+MYV+ G + A +VF+ +++Y
Sbjct: 114 HGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGY 172
Query: 107 -------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
KD++SW+ +ISG A G ++AL+LF M+ V PD+ T + ++SA
Sbjct: 173 IENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 232
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+ G ++ G + + + + ++D+Y + G LE A +P + S
Sbjct: 233 CAQSGSIELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVIS 291
Query: 214 VWGALL 219
W L+
Sbjct: 292 -WNTLI 296
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 198/296 (66%), Gaps = 10/296 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW +I GY GF +EA+ VF +M+ + N A++V L+AC+ + AL
Sbjct: 204 MPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSG-FRLNRASIVGALTACAFLGALDQ 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ R+ +S+ ++G A+I+MY KCG + +A VF+ + +D+ +++ +ISGLA
Sbjct: 263 GRWIHAYVK-RHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLA 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ A+ LF+ M GV P++VTF+ +++ACS G+VD+GL +F++MS Y I PQ
Sbjct: 322 NHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQI 381
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN----DEMFDPIRQ 236
QHY C+VD+ GRAG +EEA+ +REMP++ + GALL+ACR+H + +EM D + Q
Sbjct: 382 QHYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ 441
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ GV V L+SN +A AD+WEDA+KIR ++ ++K GCS IEVN ++
Sbjct: 442 RCLDHGGVHV----LLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTV 493
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 102/229 (44%), Gaps = 34/229 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TM+ + E+ A S+++ M ++ PN T V+ AC + L G H +
Sbjct: 80 WNTMMQAFVEKNEAVRAFSLYKHMLESNYL-PNNFTFSFVIRACIDVFNLQMGLCFHGQV 138
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG----- 123
++ + V N +I++Y CG + +A +F+M +D+++W+ +ISG +G
Sbjct: 139 -VKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIA 197
Query: 124 --------------------------CGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++AL++F M ++G + + + ++AC+
Sbjct: 198 RELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFL 257
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
G +DQG + + + + + A ++DMY + G +E A + EM
Sbjct: 258 GALDQGRWIHAYVKRHHMSLDRMLGTA-LIDMYAKCGCIEMACSVFDEM 305
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ G + G A+S+F+ M+ + +P+ T++ VL ACS ++AL
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG-IDPDLTTMLGVLPACSHLAALQH 431
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H Y+ R + L+ NA+I+MY KCG + A +VFN + D++SW+ +I G
Sbjct: 432 GFCSHGYLIVR-GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LF ++ G+ PDD+TFI L+S+CSH GLV +G + F AMS + IVP+
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 550
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H C+VD+ GRAGL++EA FIR MP E + +W ALL+ACRIH+N E+ + + +++ +
Sbjct: 551 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQS 610
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S G F L+SN ++ A RW+DA IR + GLKK GCSWIE+N
Sbjct: 611 LGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 13/230 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ VSW+ MIGGY +EA+ +F +M +P TL +VL AC+ ++ LS
Sbjct: 271 MGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI + + L+GN +++MY KCG + AI+ F+ + KD +S+S ++SG
Sbjct: 331 GRKLHCYI-IKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCV 389
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG AL +F +M ++G+ PD T + ++ ACSH G G ++ + +T
Sbjct: 390 QNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT--- 446
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + A M + W A++ IH
Sbjct: 447 ---DTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 13/227 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W MI G + G C++AV + +M++ PN +T+V VL AL
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGH 228
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y R +D V +VG +++MY KC + A ++F+++ ++ +SWS +I G
Sbjct: 229 GKALHGYCVRRSFDNGV--VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGY 286
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYE 175
+ C ++AL+LF MI+ + + P VT +++ AC+ + +G L + +V +
Sbjct: 287 VASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLD 346
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
I+ ++ MY + G++++A F EM + S + A+++ C
Sbjct: 347 ILLGNT----LLSMYAKCGVIDDAIRFFDEMNPKDSVS-FSAIVSGC 388
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 10/222 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P V+ W +I YA G + A+ ++ M PN+ T VL ACS + A+
Sbjct: 69 IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS+ + + L V A+++ Y KCG + A ++F+ ++++D+++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK---AMSTVYEIV 177
+ G A+QL M G+ P+ T + ++ + G L S +V
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
T ++DMY + L A M + E S W A++
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMI 283
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+++L AC +L+ + +H + + S+++ + + +Y+ C V +A ++F+ +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQVVLARRLFDEIP 70
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
+I W+ +I A NG A+ L+ M+ GV P+ T+ ++ ACS G L + +
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS-GLLAIEDGV 129
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++ + +VD Y + G+L EA+ M + W A++ C ++
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLY 188
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/289 (42%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ G + G A+S+F+ M+ + +P+ T++ VL ACS ++AL
Sbjct: 373 MNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSG-IDPDLTTMLGVLPACSHLAALQH 431
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H Y+ R + L+ NA+I+MY KCG + A +VFN + D++SW+ +I G
Sbjct: 432 GFCSHGYLIVR-GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYG 490
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LF ++ G+ PDD+TFI L+S+CSH GLV +G + F AMS + IVP+
Sbjct: 491 IHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRM 550
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H C+VD+ GRAGL++EA FIR MP E + +W ALL+ACRIH+N E+ + + +++ +
Sbjct: 551 EHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQS 610
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S G F L+SN ++ A RW+DA IR + GLKK GCSWIE+N
Sbjct: 611 LGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEIN 659
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 118/230 (51%), Gaps = 13/230 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ VSW+ MIGGY +EA+ +F +M +P TL +VL AC+ ++ LS
Sbjct: 271 MGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSR 330
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI + + L+GN +++MY KCG + AI+ F+ + KD +S+S ++SG
Sbjct: 331 GRKLHCYI-IKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCV 389
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG AL +F +M ++G+ PD T + ++ ACSH G G ++ + +T
Sbjct: 390 QNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT--- 446
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + A M + W A++ IH
Sbjct: 447 ---DTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIH 492
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 13/227 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W MI G + G C++AV + +M++ PN +T+V VL AL
Sbjct: 170 MSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGIC-PNSSTIVGVLPTVGEAKALGH 228
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y R +D V +VG +++MY KC + A ++F+++ ++ +SWS +I G
Sbjct: 229 GKALHGYCVRRSFDNGV--VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGY 286
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYE 175
+ C ++AL+LF MI+ + + P VT +++ AC+ + +G L + V +
Sbjct: 287 VXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLD 346
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
I+ ++ MY + G++++A F M + S + A+++ C
Sbjct: 347 ILLGNT----LLSMYAKCGVIDDAIRFFDXMNPKDSVS-FSAIVSGC 388
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 15/256 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P V+ W +I YA G + A+ ++ M PN+ T VL ACS + A+
Sbjct: 69 IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS+ + + L V A+++ Y KCG + A ++F+ ++++D+++W+ +I+G +
Sbjct: 128 GVEIHSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK---AMSTVYEIV 177
+ G A+QL M G+ P+ T + ++ + G L S +V
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPI--EAEWS--VWGALLNACRIHRNDEMFDP 233
T ++DMY + L A M + E WS + G + + C + E+FD
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDC-MKEALELFDQ 301
Query: 234 -IRQELVNKKGVSVGT 248
I ++ ++ V++G+
Sbjct: 302 MILKDAMDPTPVTLGS 317
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+++L AC +L+ + +H + + S+++ + + +Y+ C V +A ++F+ +
Sbjct: 12 LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVL-HKLTRLYLSCNQVVLARRLFDEIP 70
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
+I W+ +I A NG A+ L+ M+ GV P+ T+ ++ ACS G L + +
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACS-GLLAIEDGV 129
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++ + +VD Y + G+L EA+ M + W A++ C ++
Sbjct: 130 EIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMS-HRDVVAWNAMIAGCSLY 188
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 193/285 (67%), Gaps = 5/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWT MI GYA+ G ++ + +F+ M+ +PNE T+V+VLSAC++++AL
Sbjct: 283 MPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEE 342
Query: 61 GQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++VH++I ++ + ++N +G A+I+MY KCG IA+++FN L K++ +W+ +I+
Sbjct: 343 GRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITR 401
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAMNG R ++ F M G P+D+TF+ +++ACSHGGLVD+G F++M++ + P
Sbjct: 402 LAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQP 461
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VDM GRAGLLEEAE IR MP+ + V+GALL ACR+H+ ++ + ++ E+
Sbjct: 462 EVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEI 521
Query: 239 --VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+N G L+S+ +A A +W D + R ++R G++K T
Sbjct: 522 HSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 566
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+TM+GGYA G + A +F M NV++ S ++ +
Sbjct: 188 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR---------NVVTWNSMVTGFAR 238
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ ++ V NLV NA++ Y D+ A ++F+++ KD++SW+ +ISG
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + L+LF M + V P++VT ++++SAC++ +++G + A +++V
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV-HAFIDKHKMVL 357
Query: 179 QTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
++ A ++DMY + G + A + S W AL+ ++ N
Sbjct: 358 NNEYNLGAALIDMYAKCGRTDIAVKIFNSLD-RKNVSAWNALITRLAMNGN 407
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N VI YVKCG++ A +VF+ + ++ +SWST++ G A G A ++F M G
Sbjct: 166 NTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG-- 223
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST------------------------VYEIV 177
+ VT+ ++++ + GL+ +F M +++++
Sbjct: 224 RNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVM 283
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEA 210
P+ + C++ Y +AG ++ R M E+
Sbjct: 284 PEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 318
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/289 (44%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW MI GYA+ G +EAV VF+EM+ E PN TLV+VL A S + AL
Sbjct: 219 MPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMA-EVPPNYVTLVSVLPAMSRLGALEL 277
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + R ++ V +++G+A+I+MY KCG + A+QVF L +++++WST+I+GLA
Sbjct: 278 GKWVHLY-AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLA 336
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + L F M GV P DVT+I L+SACSH GLV++G F M V + P+
Sbjct: 337 MHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRI 396
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLLEE+E I MPI+ + +W ALL AC++H N EM + + L+
Sbjct: 397 EHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLME 456
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G++ +SN +A WE K+R ++ M ++K GCSWIE++
Sbjct: 457 LAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELD 505
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 57/275 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + S+ T+I +E +A+ VF EM + EPN T +V AC L
Sbjct: 71 MHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLRE 130
Query: 61 GQYVHSYISTRYDLS-----VSNLVG---------------------------------- 81
G+ VH ++ ++ L VSN+V
Sbjct: 131 GRQVHG-LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRV 189
Query: 82 -------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
N +I+ YV+ G++ +A +F+ + + ++SW+ +I+G A +G ++A+++F
Sbjct: 190 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 249
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMY 190
M + V P+ VT ++++ A S G ++ G L + V +++ + ++DMY
Sbjct: 250 MQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG-----SALIDMY 304
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ G +E+A +P + W ++ +H
Sbjct: 305 AKCGSIEKALQVFEGLP-KRNVVTWSTIIAGLAMH 338
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 186/288 (64%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSW TMIGGY++ EA+ +F EM+K E+ P+ T+ +L AC S++AL
Sbjct: 816 IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK--ESRPDGITMACLLPACGSLAALEI 873
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R S V NA+I+MYVKCG + A +F+M+ KD+I+W+ +ISG
Sbjct: 874 GRGIHGCI-LRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCG 932
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F M I G+ PD++TF +++ ACSH GL+++G F +M + + P+
Sbjct: 933 MHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKL 992
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L +A I MPI+ + ++WGALL CRIH + E+ + + + +
Sbjct: 993 EHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFE 1052
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L++N +A A++WE+ K+R+ I + GLKK GCSWIEV
Sbjct: 1053 LEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEV 1100
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 15/230 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ VVSWT++I Y G ++A+ +F EME +K P+ ++ +VL AC+ ++L
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEME-SKGVSPDVYSMTSVLHACACGNSLDK 773
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+YI + ++++ V NA+++MY KCG + A VF+ + KD++SW+T+I G +
Sbjct: 774 GRDVHNYIR-KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYS 832
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
N +AL+LF+ M PD +T L+ AC ++ G IL S+
Sbjct: 833 KNSLPNEALKLFAEMQKESR-PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G L A +P E + W +++ C +H
Sbjct: 892 VANA------LIDMYVKCGSLVHARLLFDMIP-EKDLITWTVMISGCGMH 934
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSW +MI G GF A+ F +M + + ATLVN ++AC+++ +LS G+
Sbjct: 617 RDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG-VDLATLVNSVAACANVGSLSLGRA 675
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + S + N +++MY KCG++ AIQ F + K ++SW+++I+ G
Sbjct: 676 LHGQ-GVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
A++LF M GV PD + +++ AC+ G +D+G V+ + +
Sbjct: 735 LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG-------RDVHNYIRKNNMA 787
Query: 184 AC------VVDMYGRAGLLEEAEAFIREMPIE 209
C ++DMY + G +EEA ++P++
Sbjct: 788 LCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK 819
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 131/281 (46%), Gaps = 17/281 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ V W M+ YA+ G E++ +F++M+K N T +L +++ +
Sbjct: 513 LSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG-ITGNSYTFSCILKCFATLGRVGE 571
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H + + N V N++I Y K G+V A ++F+ L +D++SW+++ISG
Sbjct: 572 CKRIHGCV-YKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCV 630
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF----KAMSTVYEI 176
MNG AL+ F M+I V D T + ++AC++ G + G L KA + +
Sbjct: 631 MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVM 690
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
T ++DMY + G L +A +M + S W +L+ A R D IR
Sbjct: 691 FNNT-----LLDMYSKCGNLNDAIQAFEKMGQKTVVS-WTSLIAA--YVREGLYDDAIRL 742
Query: 237 EL-VNKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRR 274
+ KGVS +++ S + A + + + + IR+
Sbjct: 743 FYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRK 783
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 119/263 (45%), Gaps = 28/263 (10%)
Query: 5 DVVSWTTMIGGYAERG-------FCE--EAVSVFQEMEKTKEAEPNEATLVNVLSACSSI 55
DV +T +G +A+ FCE + + + + ++++E + ++L C+
Sbjct: 405 DVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEH 464
Query: 56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWST 114
L G+ VHS IS+ + + ++G ++ MYV CG + ++F+ +L+ + W+
Sbjct: 465 KCLQEGKMVHSVISSN-GIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNL 523
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAM 170
++S A G R+++ LF M G+ + TF ++ + G V + ++K
Sbjct: 524 MMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLG 583
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI----HR 226
Y V + ++ Y ++G ++ A E+ + + W ++++ C + H
Sbjct: 584 FGSYNTVVNS-----LIATYFKSGEVDSAHKLFDELG-DRDVVSWNSMISGCVMNGFSHS 637
Query: 227 NDEMFDPIRQELVNKKGVSVGTF 249
E F Q L+ + GV + T
Sbjct: 638 ALEFF---VQMLILRVGVDLATL 657
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+ WT M+ YA+ ++A ++F +M +T P + T+V++LS C+ AL G++
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVTIVSLLSLCAVAGALDLGKW 380
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHSYI + + V ++ A+++MY KCGD+ A ++F +D+ W+ +I+G AM+G
Sbjct: 381 VHSYID-KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHG 439
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL +F+ M GV P+D+TFI L+ ACSH GLV +G LF+ M + +VPQ +HY
Sbjct: 440 YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY 499
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAGLL+EA I+ MPI+ VWGAL+ ACR+H+N ++ + +L+ +
Sbjct: 500 GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEP 559
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G LMSN +A A+RW DA +R ++ +G+KK+ G S IEVN ++
Sbjct: 560 ENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 608
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 119/259 (45%), Gaps = 39/259 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW+TMI + + A+ + +EM + P+E +V++++ + + +
Sbjct: 185 MMERDVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRM 243
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ S + V A+++MY KCG +G+A Q+FN L K ++SW+ +I+
Sbjct: 244 GKAMHAYVIRNSNNEHMGVP--TTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 301
Query: 118 G-------------------------------LAMNGCGRQALQLFSLMIINGVFPDDVT 146
G A C QA LF M +GV P VT
Sbjct: 302 GCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVT 361
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++L+S C+ G +D G + + V + A +VDMY + G + A E
Sbjct: 362 IVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINAAGRLFIE- 419
Query: 207 PIEAEWSVWGALLNACRIH 225
I + +W A++ +H
Sbjct: 420 AISRDICMWNAIITGFAMH 438
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 126/278 (45%), Gaps = 21/278 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I Y +R A++V+ ++ K + E + +VL AC +S G+ +H ++
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKM-DFEVDNFMAPSVLKACGQVSWTQLGKEIHGFV 150
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L VGNA++ MY +C V A VF+ + +D++SWST+I L+ N A
Sbjct: 151 -LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMA 209
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVPQTQHYA 184
L+L M V P +V +++++ + + G + + + + VP T
Sbjct: 210 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT---T 266
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQELVN 240
++DMY + G L A + + S W A++ C R+ +FD +
Sbjct: 267 ALLDMYAKCGHLGLARQLFNGLTQKTVVS-WTAMIAGCIRSNRLEEARALFDSTQNR--- 322
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
V + M + +A A+ + A + D++R G++
Sbjct: 323 ----DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 356
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW+ M+ GY + G EA+ +F M+ ++ P++ LV VL+AC+ AL
Sbjct: 169 MPARNAVSWSAMVNGYVQAGDGREALRIFARMQ-AEDVRPDDTVLVGVLAACAQHGALEQ 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ + + ++ G A+++MY KCG+V +A+ VF + YK++++W+T+I GLA
Sbjct: 228 GKWVHGYLKA-HGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLA 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ LF+ M +G+ PDD+ FI ++ AC+H GLVD+G LF +M Y I P+
Sbjct: 287 MHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKI 346
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R G L EA+ I++MP+E + +WGAL+ CR H+N E + + + +
Sbjct: 347 EHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWIL 406
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A + R A +IR +R G+ K GCS +EVN
Sbjct: 407 LEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVN 455
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
V V +A + A G + R +V N +I Y + G + A +F+ +
Sbjct: 110 FVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEM 169
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
++ +SWS +++G G GR+AL++F+ M V PDD + +++AC+ G ++QG
Sbjct: 170 PARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG 228
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +W +I Y + G A+S+F EM+ +K+A+P+E TL+ L A + + A+ F
Sbjct: 366 MPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDF 425
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI ++D++++ + ++++MY KCG++ A++VF+ + KD+ WS +I LA
Sbjct: 426 GHWIHVYIK-KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALA 484
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G+ AL LFS M+ + P+ VTF ++ AC+H GLV++G LF+ M +Y IVPQ
Sbjct: 485 MYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQI 544
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY CVVD++GRAGLLE+A +FI +MPI +VWGALL AC H N E+ + Q L+
Sbjct: 545 QHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLE 604
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G F L+SN +A A WE + +R +R +KK+ CS I+VN
Sbjct: 605 LEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVN 653
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 126/253 (49%), Gaps = 36/253 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSW MI +A G ++A+ +FQEME K+ +PN T+V+VLSAC+ L F
Sbjct: 234 MPGKDVVSWNAMINAFALGGLPDKALLLFQEME-MKDVKPNVITMVSVLSACAKKIDLEF 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ SYI + ++ NA+++MYVKCG + A +FN ++ KD++SW+T++ G A
Sbjct: 293 GRWICSYIENN-GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHA 351
Query: 121 -------------------------------MNGCGRQALQLFSLMIIN-GVFPDDVTFI 148
NG R AL LF M ++ PD+VT I
Sbjct: 352 KLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLI 411
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+ A + G +D G + + ++I ++DMY + G L +A +
Sbjct: 412 CALCASAQLGAIDFGHWIHVYIKK-HDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE- 469
Query: 209 EAEWSVWGALLNA 221
+ VW A++ A
Sbjct: 470 RKDVYVWSAMIGA 482
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 9/223 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ W T+I GYA ++ +F M + PN+ T + A S + L
Sbjct: 132 IPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHL 191
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + LS + N++IN Y G +A +VF + KD++SW+ +I+ A
Sbjct: 192 GSVLHGMV-IKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFA 250
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G +AL LF M + V P+ +T ++++SAC+ ++ G + + + E T
Sbjct: 251 LGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFG----RWICSYIENNGFT 306
Query: 181 QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+H ++DMY + G + +A+ +M E + W +L+
Sbjct: 307 EHLILNNAMLDMYVKCGCINDAKDLFNKMS-EKDIVSWTTMLD 348
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 29/210 (13%)
Query: 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI--STRY--DLSVS 77
C EAV + EK E E ++ + C++ L + +H+++ ++R+ + S
Sbjct: 58 CTEAV----KGEKGNEVE--STNILEFIDQCTNTMQL---KQIHAHMLRTSRFCDPYTAS 108
Query: 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
L+ I+ C + A VFN + ++ W+T+I G A + Q+ +F M+
Sbjct: 109 KLLTAYAIS---SCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLH 165
Query: 138 N-GVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191
+ FP+ TF L A S H G V G+++ ++S+ I+ +++ YG
Sbjct: 166 SCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNS------LINFYG 219
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+G + A MP + S W A++NA
Sbjct: 220 SSGAPDLAHRVFTNMPGKDVVS-WNAMINA 248
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 188/291 (64%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD+V WT MI GY + EE +++F EM+ + +P++ +V +L+ C+ AL G
Sbjct: 302 PSRDIVLWTAMINGYVQFNRFEETIALFGEMQ-IRGVKPDKFIVVTLLTGCAQSGALEQG 360
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H+YI + V +VG A+I MY KCG + + ++FN L KD SW+++I GLAM
Sbjct: 361 KWIHNYIDEN-RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAM 419
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LF M G+ PDD+TF+A++SACSH GLV++G LF +MS++Y I P +
Sbjct: 420 NGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLE 479
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNACRIHRNDEMFDPIRQEL 238
HY C +D+ GRAGLL+EAE ++++P + ++GALL+ACR + N +M + + L
Sbjct: 480 HYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATAL 539
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K L+++ +A ADRWED K+R++++ +G+KK G S IEV+
Sbjct: 540 AKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVD 590
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW MI GY EEAV V++ M +PNEAT+V+ LSAC+ + L
Sbjct: 169 MPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLEL 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI++ DL+ ++GNA+++MY KCG V +A ++F+ + K++ W+++++G
Sbjct: 229 GKEIHDYIASELDLTT--IMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYV 286
Query: 121 MNGCGRQA-------------------------------LQLFSLMIINGVFPDDVTFIA 149
+ G QA + LF M I GV PD +
Sbjct: 287 ICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVT 346
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
L++ C+ G ++QG + + V A +++MY + G +E++
Sbjct: 347 LLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTA-LIEMYAKCGCIEKS 395
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 124/285 (43%), Gaps = 17/285 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ MI + + G A+S+FQ++ + P+ T VL I + G+ VH+++
Sbjct: 76 YNLMIKAFVKSGSFRSAISLFQQL-REHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFV 134
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N+ ++MY + G V QVF + +D +SW+ +ISG +A
Sbjct: 135 -VKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEA 193
Query: 129 LQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ ++ M + P++ T ++ +SAC+ ++ G + +++ E+ T ++
Sbjct: 194 VDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIAS--ELDLTTIMGNALL 251
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247
DMY + G + A M ++ + W +++ I D R +
Sbjct: 252 DMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGYVICGQ---LDQARNLFERSPSRDIV 307
Query: 248 TFALMSNTFAGADRWEDANKIRDEIRRMGLKKK--------TGCS 284
+ M N + +R+E+ + E++ G+K TGC+
Sbjct: 308 LWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCA 352
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
+ T +++L +C S+S L Q + + D N + +M GD A ++F
Sbjct: 8 KGTYISLLKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKL--MAFSMDSSLGDFNYANRIF 65
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
N + + ++ +I +G R A+ LF + +GV+PD+ T+ ++ G V
Sbjct: 66 NYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVR 125
Query: 162 QGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+G K + V + + Y C +DMY GL+E EMP + + W ++
Sbjct: 126 EGE---KVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMP-DRDAVSWNIMI 181
Query: 220 NA-CRIHRNDEMFDPIRQ 236
+ R R +E D R+
Sbjct: 182 SGYVRCKRFEEAVDVYRR 199
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 187/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW MI Y +RG C EA+ ++ +M+ A P+E TLV VLSA I L+
Sbjct: 305 MPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLA-PDEITLVAVLSASGRIGDLTV 363
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH YI Y+ VS + N++++MY KCG V AI +F+ + ++++SW+ +I GL
Sbjct: 364 GKMVHLYIRDNIYNPDVS--LVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGL 421
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G + F M+ + PD +TF+AL+SACSHGGL++ G F++M VY + +
Sbjct: 422 AMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHE 481
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR G LE+A I+EMP++ + VWGALL ACRIH N ++ + ++L+
Sbjct: 482 VEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLL 541
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G+S G F L+SN +WED ++R ++ G +K G S IE+N SI
Sbjct: 542 ELEGISGGLFVLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSI 594
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 42/241 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW +MIGGYA+ G E S+F EM + E +E TLV++L ACS L
Sbjct: 173 MVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLE-DEFTLVSLLIACSQEGNLEI 231
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST--- 114
G+ VH + +R DL ++ +A+++MY KCGD+ +A + F M+ K ++SW++
Sbjct: 232 GRLVHCRMLVSGSRVDL----ILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLC 287
Query: 115 ----------------------------VISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
+IS G +AL L++ M G+ PD++T
Sbjct: 288 AQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEIT 347
Query: 147 FIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+A++SA G L ++ +Y P ++DMY + G ++ A + E
Sbjct: 348 LVAVLSASGRIGDLTVGKMVHLYIRDNIYN--PDVSLVNSLLDMYAKCGQVDTAISLFSE 405
Query: 206 M 206
M
Sbjct: 406 M 406
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 4/225 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D V + T+I Y EA+ + + M + + PNE TL V+ AC+ A
Sbjct: 72 IPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLR-RGILPNEFTLPFVVKACTIAQAREH 130
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH ++ R L VGNA+++ Y G +G + + F+ + ++++SW+++I G A
Sbjct: 131 ALAVHG-VALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYA 189
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+ LF M G D+ T ++L+ ACS G ++ G ++ M V
Sbjct: 190 QAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLI 249
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A +VDMYG+ G L A MPI++ S W ++L A H
Sbjct: 250 LESA-LVDMYGKCGDLWMARRCFEMMPIKSVVS-WTSMLCAQTKH 292
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 8/178 (4%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQ---YVHSYISTRYDLSVSNLVGNAVINMY 88
M A + +L +L C SI L+ VH +S DL +++ A
Sbjct: 1 MLTPARAGHHLPSLQKLLRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHG 60
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
V C A ++F+ + D + ++T+I + C R+AL+L M+ G+ P++ T
Sbjct: 61 VLCH----ARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLP 116
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++ AC+ + L + ++ +V Q ++ Y AG L ++ F EM
Sbjct: 117 FVVKACTIAQAREHALAV-HGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEM 173
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 192/290 (66%), Gaps = 7/290 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP+RD VSW +MI GY + G +A+ +F+EM ++++ +P+E T+V+V SAC + L
Sbjct: 291 MPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELG 350
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + S + + + +S V N++INMY +CG + A+ +F +A +D++S++T+ISG
Sbjct: 351 LGNWAVSILKVNH-IQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGF 409
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G ++++L S M +G+ PD +T+IA+++ACSH GL+D+G LF+++ P
Sbjct: 410 AEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK-----FPD 464
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC++DM GRAG LEEA I+ MP+E ++G+LLNA IH+ E+ + +L
Sbjct: 465 VDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLF 524
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +AL+SN +A A RW++ +K+RD +R+ G+KK TG SW+E N
Sbjct: 525 KVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLEHN 574
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M+ GYA+ G EE + +F +M +P+E T V+S+CSS+
Sbjct: 154 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---------------- 104
+ + + + + V A+++M+ KCG++ A ++F L
Sbjct: 214 SESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 273
Query: 105 AY------------------KDMISWSTVISGLAMNGCGRQALQLFSLMII--NGVFPDD 144
AY +D +SW+++I+G NG +A++LF MI + PD+
Sbjct: 274 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 333
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204
VT +++ SAC H G + G + V I Y +++MY R G +++A +
Sbjct: 334 VTMVSVFSACGHLGELGLGNWAVSILK-VNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 392
Query: 205 EM 206
EM
Sbjct: 393 EM 394
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R V W MI GY + G EEA ++F M
Sbjct: 88 MPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQ------------------------- 122
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++S + + +I + K G++ A F+ + + ++SW+ ++SG A
Sbjct: 123 ------------EISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 170
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G + ++LF+ M+ G V PD+ T+ +IS+CS G + + + P
Sbjct: 171 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPN 230
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 221
++DM+ + G LE A ++ + S W A+++A
Sbjct: 231 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 274
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 122/270 (45%), Gaps = 22/270 (8%)
Query: 12 MIGGYAERGFCEEA-VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
M+ Y++ G + VS+F+ M + + +PN A+ +V+ + ++ F +V + +
Sbjct: 1 MLKYYSQIGVHSQVFVSLFKHMLQHCDIKPN-ASFYSVMMKSAGSESMLFLAHV---LKS 56
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
YD + V N ++ +Y K G + A ++F+ + + + W+ +ISG G +A
Sbjct: 57 GYDRD--HYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEAST 114
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVD 188
LF +M + + +T+ +I+ + G + + F M P+ + ++
Sbjct: 115 LFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKM-------PERSVVSWNAMLS 167
Query: 189 MYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
Y + G EE +M ++ + + W ++++C + + + I ++L +K G
Sbjct: 168 GYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGF 227
Query: 245 SVGTF--ALMSNTFAGADRWEDANKIRDEI 272
F + + A E A+KI +++
Sbjct: 228 RPNYFVKTALLDMHAKCGNLEAAHKIFEQL 257
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 186/292 (63%), Gaps = 4/292 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V++W+ +I G+A +G EE++ VF++M+ + N T+ +VLS C+ ++AL+ G+
Sbjct: 377 KPNVITWSAIICGFASKGLGEESLEVFRKMQ-LANVKANSVTIASVLSICAMLAALNLGR 435
Query: 63 YVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + I R D +V LVGN +INMY KCG VF L +D ISW+++I+G
Sbjct: 436 EMHGHVIRARMDDNV--LVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGT 493
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G+ AL F+ MI +G PD VTFIA +SACSH GLV +G LF M ++I P+ +
Sbjct: 494 HGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIE 553
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAGL+EEA I+ MP+E +W +LLN+CR+H++ ++ + ++ N
Sbjct: 554 HYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNL 613
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G+ L+SN FA + RWED+ ++R R GLKK G SWIEV ++
Sbjct: 614 NSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVY 665
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 93/168 (55%), Gaps = 6/168 (3%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V+WT+++ +A G EE + +F +M + K P L VLS C+ ++ L+ GQ +H
Sbjct: 241 VTWTSLLSSHARCGHLEETMVLFCKM-RMKGVGPTAEMLAVVLSVCADLATLNSGQMIHG 299
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
Y+ + + NA+I +Y K G VG A ++F+ + K+++SW+ +IS A +G
Sbjct: 300 YM-VKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYD 358
Query: 127 QALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQGLILFKAM 170
+AL+L S + +P+ +T+ A+I + GL ++ L +F+ M
Sbjct: 359 KALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 115/248 (46%), Gaps = 39/248 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++I G+C EA+ ++ +M + + T +L A S++ A + + +H ++
Sbjct: 107 WNSIIRANVYHGYCIEALQLYGKM-RNYGVLGDGFTFPLLLRASSNLGAFNMCKNLHCHV 165
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
++ VGN +I MY K + A +VF+ + K ++SW+T++SG A N A
Sbjct: 166 -VQFGFQNHLHVGNELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGA 224
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-- 186
++F M + GV P+ VT+ +L+S+ + G +++ ++LF M + + P + A V
Sbjct: 225 SRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEETMVLFCKM-RMKGVGPTAEMLAVVLS 283
Query: 187 ---------------------------------VDMYGRAGLLEEAEAFIREMPIEAEWS 213
+ +YG+ G + +AE EM ++ S
Sbjct: 284 VCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVS 343
Query: 214 VWGALLNA 221
W AL+++
Sbjct: 344 -WNALISS 350
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD +SW +MI GY G ++A++ F M K+ P+ T + LSACS ++
Sbjct: 476 LENRDSISWNSMIAGYGTHGLGKDALATFNHMIKSG-YRPDGVTFIAALSACSHAGLVAE 534
Query: 61 GQYVHSYISTRYDL 74
G ++ S + + +
Sbjct: 535 GHWLFSQMRQNFKI 548
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW +I GY + +EA+ VFQEM + EPN++T+ + L+AC+ + +L
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEM-IIEGIEPNQSTVTSALTACAQLGSLDQ 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y+ R L +++ +G A+++MY KCG V A+ VF L KD+ W+ +I+GLA
Sbjct: 325 GRWLHEYVD-RSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G +L LFS MI + V P+ VTF+ ++SAC+HGGLVD+GL LF+ M Y + P
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG LEEA FI MP+E VWGAL + C IH+ E+ + I L+
Sbjct: 444 DHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N ++ +WE A +R ++ G+ K GCSWIEVN I
Sbjct: 504 LQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPGCSWIEVNGVI 555
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+DVVSWT +I G G EA+ F EM ++ E +E T+V+VL A + + + FG+
Sbjct: 166 KKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVTIVSVLCAAAMLRDVWFGR 224
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VH + + VG+A+++MY KCG A++VFN + ++++SW +I+G
Sbjct: 225 WVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQC 284
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
++AL++F MII G+ P+ T + ++AC+ G +DQG L + + ++ ++
Sbjct: 285 NRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRS-KLGLNSKL 343
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFDPIRQE 237
+VDMY + G ++EA ++P + + W A++N + R D +F + +
Sbjct: 344 GTALVDMYSKCGCVDEALLVFEKLPAKDVYP-WTAMINGLAM-RGDALSSLNLFSQMIRS 401
Query: 238 LVNKKGVS 245
V GV+
Sbjct: 402 RVQPNGVT 409
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 28/223 (12%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGQYVHSY 67
W T+I G++ + + + + + P+ T +L A S + + F Y H
Sbjct: 72 WNTIIRGFSASSQPQMVLVAYSRL-RNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHI- 129
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ L V N++++ + CG V + ++F A KD++SW+ +I+G NG +
Sbjct: 130 --VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEI 176
AL+ F M +GV D+VT ++++ A + HG V+ G +++
Sbjct: 188 ALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG---- 243
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +VDMY + G ++A EMP S WGAL+
Sbjct: 244 -------SALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALI 278
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 3/130 (2%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D+G + +F+ LA + W+T+I G + + + L +S + +GV PD TF L+
Sbjct: 53 DLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLK 112
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
A S L ++ F A + + +V + G ++ + E + +
Sbjct: 113 AFSK--LRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-KKDV 169
Query: 213 SVWGALLNAC 222
W AL+N C
Sbjct: 170 VSWTALINGC 179
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 193/285 (67%), Gaps = 5/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWT MI GYA+ G ++ + +F+ M+ +PNE T+V+VLSAC++++AL
Sbjct: 145 MPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEE 204
Query: 61 GQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++VH++I ++ + ++N +G A+I+MY KCG IA+++FN L K++ +W+ +I+
Sbjct: 205 GRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITR 263
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAMNG R ++ F M G P+D+TF+ +++ACSHGGLVD+G F++M++ + P
Sbjct: 264 LAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQP 323
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VDM GRAGLLEEAE IR MP+ + V+GALL ACR+H+ ++ + ++ E+
Sbjct: 324 EVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEI 383
Query: 239 --VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+N G L+S+ +A A +W D + R ++R G++K T
Sbjct: 384 HSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 428
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+TM+GGYA G + A +F M A NV++ S ++ +
Sbjct: 50 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRM---------PAIGRNVVTWNSMVTGFAR 100
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ ++ V NLV NA++ Y D+ A ++F+++ KD++SW+ +ISG
Sbjct: 101 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 160
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + L+LF M + V P++VT ++++SAC++ +++G + A +++V
Sbjct: 161 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV-HAFIDKHKMVL 219
Query: 179 QTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
++ A ++DMY + G + A + S W AL+ ++ N
Sbjct: 220 NNEYNLGAALIDMYAKCGRTDIAVKIFNSLD-RKNVSAWNALITRLAMNGN 269
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N VI YVKCG++ A +VF+ + ++ +SWST++ G A G A ++F M G
Sbjct: 28 NTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG-- 85
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST------------------------VYEIV 177
+ VT+ ++++ + GL+ +F M +++++
Sbjct: 86 RNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVM 145
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEA 210
P+ + C++ Y +AG ++ R M E+
Sbjct: 146 PEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 180
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +I GYA+ G EEA+++F E+++ E+ N AT LS C+ I+AL
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES-LNRATFGCALSTCADIAALEL 412
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A F + KD++SW+T+++G A
Sbjct: 413 GKQIHGQ-AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA 471
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GRQAL +F M GV PD++T + ++SACSH GL+D+G F +M+ Y ++P +
Sbjct: 472 RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTS 531
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG LEEA+ IR MP + + WGALL A RIH N E+ + + +
Sbjct: 532 KHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW DA+K+R ++R +G++K G SW+EV I
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 66/321 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW +++ GYA+ G+ +EA VF M E N + +L+A
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM-----PEKNSISWNGLLAA--------- 182
Query: 61 GQYVHS--------YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW 112
YVH+ ++ D + + N ++ +V+ +G A +F+ + +D ISW
Sbjct: 183 --YVHNGRIEEACLLFESKSDWDL--ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS- 171
+T+ISG A G QA +LF VF T+ A++S G++D+ F M
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVF----TWTAMVSGYVQNGMLDEAKTFFDEMPE 294
Query: 172 -----------------------TVYEIVP--QTQHYACVVDMYGRAGLLEEAEAFIREM 206
++E +P + ++ YG+ G + +A F M
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354
Query: 207 PIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW 262
P + + W A++ + MF I+Q+ + ++ TF +T A
Sbjct: 355 P-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD---GESLNRATFGCALSTCADIAAL 410
Query: 263 EDANKIRDEIRRMGLKKKTGC 283
E +I + +MG TGC
Sbjct: 411 ELGKQIHGQAVKMGY--GTGC 429
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++ W I + G C+ A+ VF M + N ++S S + + +
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNA-----MISGYLRNSKFNLARNL 102
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R DL N ++ YV+ +G A ++F+++ KD++SW++++SG A NG
Sbjct: 103 FDQMPER-DL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F N + +++ L++A H G +++ +LF++ S ++++ +
Sbjct: 158 VDEAREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-WDLIS----WN 208
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
C++ + R L +A +MP+ S W +++
Sbjct: 209 CLMGGFVRKKKLGDARWLFDKMPVRDAIS-WNTMISG 244
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 68/169 (40%), Gaps = 56/169 (33%)
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CG LQ F L++I + GL+D G F M+ Y + P ++HY
Sbjct: 762 CGDYWLQFFLLVVI------------------YTGLLDTGAEYFYPMNEEYSVTPTSKHY 803
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C++D+ GR LEE GALL A RIH N E+ + Q
Sbjct: 804 TCMIDLLGRVDRLEE-----------------GALLGASRIHGNTELGEKAAQ------- 839
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
F M +G +K+RD +G++K G SW EV I
Sbjct: 840 ----MFFKMGPQNSG------ISKMRD----VGVQKVPGYSWFEVQNKI 874
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 187/294 (63%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++VVSWTTMI GY + G E A+ VF EM K A PNE T VNVL ACS ++ L
Sbjct: 219 MPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGE 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ VH IS V +A++NMY KCG++ IA ++F+ +++ +D++ W+ +I+
Sbjct: 279 GQQVHLLISKSV-YQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAA 337
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +GCG +A++LF M G P+DV+++ L+SACSH GLVD+GL F + I
Sbjct: 338 YAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQL 397
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ H+AC+VD+ GRAG L+EA FI+++ +A S+WG LL C H + E+ +EL
Sbjct: 398 REDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKEL 457
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A +W +A+++R +++ GLKK+ GCSWIEV +
Sbjct: 458 EKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRV 511
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 17/229 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDV+SWTTM+ G A G +EA VF M + NV+S + ++ +
Sbjct: 126 MPKRDVISWTTMVMGLARSGRVDEARKVFDRMPER-----------NVVSWNAMVTGYAK 174
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + NL N +I +++ G++ A +VFN + K+++SW+T+I+G
Sbjct: 175 NMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGY 234
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIV 177
G AL++F MI + G P++ TF+ ++ ACS GL + + +VY+
Sbjct: 235 VQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQ-- 292
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIH 225
+T + +++MY + G L A ++ I + + +W ++ A H
Sbjct: 293 DRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHH 341
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WT M+ GY EEA +F+ M + NV+S + I +
Sbjct: 36 KDVVTWTAMLSGYVRLKRIEEAERLFEVM-----------PVKNVVSWNTMIDGYGKNRE 84
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V I + N+V NAVI V+CG V A + F+ + +D+ISW+T++ GLA +
Sbjct: 85 VDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARS 144
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +A ++F M V V++ A+++ + +D+ LF+ M
Sbjct: 145 GRVDEARKVFDRMPERNV----VSWNAMVTGYAKNMRLDEAFDLFERM 188
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 51/233 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+WT +I GY + G +A +F ++ K+
Sbjct: 1 MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDV---------------------- 38
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ A+++ YV+ + A ++F ++ K+++SW+T+I G
Sbjct: 39 ------------------VTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYG 80
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A+++F M + V++ A+I+A G V++ F M +++ T
Sbjct: 81 KNREVDKAIEVFERMHERNM----VSWNAVIAALVQCGRVEEARRRFDEMPK-RDVISWT 135
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFD 232
+V R+G ++EA MP E W A++ + R DE FD
Sbjct: 136 ----TMVMGLARSGRVDEARKVFDRMP-ERNVVSWNAMVTGYAKNMRLDEAFD 183
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/292 (41%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +I GYA+ G EEA+++F E+++ E+ N AT LS C+ I+AL
Sbjct: 354 MPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES-LNRATFGCALSTCADIAALEL 412
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A F + KD++SW+T+++G A
Sbjct: 413 GKQIHGQ-AVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYA 471
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GRQAL +F M GV PD++T + ++SACSH GL+D+G F +M+ Y ++P +
Sbjct: 472 RHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTS 531
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG LEEA+ IR MP + + WGALL A RIH N E+ + + +
Sbjct: 532 KHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFK 591
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW DA+K+R ++R +G++K G SW+EV I
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 135/321 (42%), Gaps = 66/321 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW +++ GYA+ G+ +EA VF M E N + +L+A
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM-----PEKNSISWNGLLAA--------- 182
Query: 61 GQYVHS--------YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW 112
YVH+ ++ D + + N ++ +V+ +G A +F+ + +D ISW
Sbjct: 183 --YVHNGRIEEACLLFESKSDWDL--ISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS- 171
+T+ISG A G QA +LF VF T+ A++S G++D+ F M
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDVF----TWTAMVSGYVQNGMLDEAKTFFDEMPE 294
Query: 172 -----------------------TVYEIVP--QTQHYACVVDMYGRAGLLEEAEAFIREM 206
++E +P + ++ YG+ G + +A F M
Sbjct: 295 KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMM 354
Query: 207 PIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW 262
P + + W A++ + MF I+Q+ + ++ TF +T A
Sbjct: 355 P-QRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQD---GESLNRATFGCALSTCADIAAL 410
Query: 263 EDANKIRDEIRRMGLKKKTGC 283
E +I + +MG TGC
Sbjct: 411 ELGKQIHGQAVKMGY--GTGC 429
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 99/205 (48%), Gaps = 19/205 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++ W I + G C+ A+ VF M + N ++S S + + +
Sbjct: 48 DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNA-----MISGYLRNSKFNLARNL 102
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R DL N ++ YV+ +G A ++F+++ KD++SW++++SG A NG
Sbjct: 103 FDQMPER-DL----FSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGY 157
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F N + +++ L++A H G +++ +LF++ S ++++ +
Sbjct: 158 VDEAREVFD----NMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD-WDLIS----WN 208
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIE 209
C++ + R L +A +MP+
Sbjct: 209 CLMGGFVRKKKLGDARWLFDKMPVR 233
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+ WT M+ YA+ ++A ++F +M +T P + T+V++LS C+ AL G++
Sbjct: 362 RDVMIWTAMLSAYAQANCIDQAFNLFDQM-RTSGVRPTKVTIVSLLSLCAVAGALDLGKW 420
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHSYI + + V ++ A+++MY KCGD+ A ++F +D+ W+ +I+G AM+G
Sbjct: 421 VHSYID-KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHG 479
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL +F+ M GV P+D+TFI L+ ACSH GLV +G LF+ M + +VPQ +HY
Sbjct: 480 YGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHY 539
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAGLL+EA I+ MPI+ VWGAL+ ACR+H+N ++ + +L+ +
Sbjct: 540 GCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEP 599
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G LMSN +A A+RW DA +R ++ +G+KK+ G S IEVN ++
Sbjct: 600 ENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTV 648
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 4/225 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++ VVSWT MI G EE +F M++ + PNE T+++++ C AL
Sbjct: 258 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE-ENIFPNEITMLSLIVECGFTGALQL 316
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+YI R SVS + A+++MY KC D+ A +F+ +D++ W+ ++S A
Sbjct: 317 GKQLHAYI-LRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYA 375
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
C QA LF M +GV P VT ++L+S C+ G +D G + + V
Sbjct: 376 QANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI 435
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ A +VDMY + G + A E I + +W A++ +H
Sbjct: 436 LNTA-LVDMYAKCGDINAAGRLFIE-AISRDICMWNAIITGFAMH 478
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 24/259 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW+TMI + + A+ + +EM + P+E +V++++ + + +
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREM-NFMQVRPSEVAMVSMVNLFADTANMRM 213
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ S + V A+++MY KCG +G+A Q+FN L K ++SW+ +I+
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTT--ALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMST 172
G + + +LF M +FP+++T ++LI C G + G IL S
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-----CRIHRN 227
+ +VDMYG+ + A A + + +W A+L+A C I +
Sbjct: 332 SLALA------TALVDMYGKCSDIRNARALF-DSTQNRDVMIWTAMLSAYAQANC-IDQA 383
Query: 228 DEMFDPIRQELVNKKGVSV 246
+FD +R V V++
Sbjct: 384 FNLFDQMRTSGVRPTKVTI 402
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 15/200 (7%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
+VL AC +S G+ +H ++ + L VGNA++ MY +C V A VF+ +
Sbjct: 99 SVLKACGQVSWTQLGKEIHGFV-LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMME 157
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+D++SWST+I L+ N AL+L M V P +V +++++ + + G
Sbjct: 158 RDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG--- 214
Query: 167 FKAMSTVYEIVPQTQHYA-----CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
KAM +H ++DMY + G L A + + S W A++
Sbjct: 215 -KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS-WTAMIAG 272
Query: 222 C----RIHRNDEMFDPIRQE 237
C R+ ++F +++E
Sbjct: 273 CIRSNRLEEGTKLFIRMQEE 292
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 192/290 (66%), Gaps = 7/290 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP+RD VSW +MI GY + G +A+ +F+EM ++++ +P+E T+V+V SAC + L
Sbjct: 348 MPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELG 407
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + S + + + +S V N++INMY +CG + A+ +F +A +D++S++T+ISG
Sbjct: 408 LGNWAVSILKVNH-IQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGF 466
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G ++++L S M +G+ PD +T+IA+++ACSH GL+D+G LF+++ P
Sbjct: 467 AEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIK-----FPD 521
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC++DM GRAG LEEA I+ MP+E ++G+LLNA IH+ E+ + +L
Sbjct: 522 VDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLF 581
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +AL+SN +A A RW++ +K+RD +R+ G+KK TG SW+E N
Sbjct: 582 KVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLEHN 631
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 37/242 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M+ GYA+ G EE + +F +M +P+E T V+S+CSS+
Sbjct: 211 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCL 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---------------- 104
+ + + + + V A+++M+ KCG++ A ++F L
Sbjct: 271 SESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 330
Query: 105 AY------------------KDMISWSTVISGLAMNGCGRQALQLFSLMII--NGVFPDD 144
AY +D +SW+++I+G NG +A++LF MI + PD+
Sbjct: 331 AYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDE 390
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204
VT +++ SAC H G + G + V I Y +++MY R G +++A +
Sbjct: 391 VTMVSVFSACGHLGELGLGNWAVSILK-VNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 449
Query: 205 EM 206
EM
Sbjct: 450 EM 451
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 40/224 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R V W MI GY + G EEA ++F M
Sbjct: 145 MPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQ------------------------- 179
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++S + + +I + K G++ A F+ + + ++SW+ ++SG A
Sbjct: 180 ------------EISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 227
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G + ++LF+ M+ G V PD+ T+ +IS+CS G + + + P
Sbjct: 228 QGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPN 287
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 221
++DM+ + G LE A ++ + S W A+++A
Sbjct: 288 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 331
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 125/275 (45%), Gaps = 18/275 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEA-VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
DV +T M+ Y++ G + VS+F+ M + + +PN A+ +V+ + ++ F +
Sbjct: 51 DVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPN-ASFYSVMMKSAGSESMLFLAH 109
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V + + YD + V N ++ +Y K G + A ++F+ + + + W+ +ISG G
Sbjct: 110 V---LKSGYDRD--HYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCG 164
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A LF +M + + +T+ +I+ + G + + F M + +
Sbjct: 165 NEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVS-----W 219
Query: 184 ACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
++ Y + G EE +M ++ + + W ++++C + + + I ++L
Sbjct: 220 NAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLD 279
Query: 240 NKKGVSVGTF--ALMSNTFAGADRWEDANKIRDEI 272
+K G F + + A E A+KI +++
Sbjct: 280 DKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQL 314
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 191/288 (66%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D ++W MI GY + G EA+S+F M++ + + NE ++V+VLSACS + AL
Sbjct: 203 MSHKDPIAWNAMISGYVQCGQSREALSLFNLMQR-EGVKVNEVSMVSVLSACSHLGALDQ 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H+YI R L ++ +G A+I+MY KCG++ A++VF + K++ +WS+ I GLA
Sbjct: 262 GRWAHAYIE-RNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + L+LFSLM + V P+++TF++++ CS GLV++G F++MS VY I P+
Sbjct: 321 MNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRL 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L+EA FI MP+ WGALLNAC+I+RN EM + +++V
Sbjct: 381 EHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVE 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + W+ + +R + G++K+ GCS IEV
Sbjct: 441 LEAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEV 488
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A+++ K GDVG A ++F+ +++KD I+W+ +ISG G R+AL LF+LM GV
Sbjct: 182 AMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKV 241
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EA 201
++V+ ++++SACSH G +DQG + + T A ++DMY + G + +A E
Sbjct: 242 NEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTA-LIDMYAKCGNMNKAMEV 300
Query: 202 F--IREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
F ++E + S G L + E+F ++Q+ V ++
Sbjct: 301 FWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEIT 346
>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
Length = 799
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VS+T +I GY + G EE + +F EM+ + P +ATL +VL AC+ ++ L +
Sbjct: 386 MDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSG-INPEKATLASVLPACAHLAGLHY 444
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H Y + + ++ NA+I+MY KCG + A +VF+ + + ++SW+T+I
Sbjct: 445 GSCSHCY-AIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYG 503
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LF M G+ PDDVTFI LISACSH GLV +G F AM+ + I+P+
Sbjct: 504 IHGIGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRM 563
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ RAGL +E +FI +MP+E + VWGALL+ACR+++N E+ + + +++
Sbjct: 564 EHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQK 623
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S G F L+SN ++ RW+DA ++R + G +K GCSWIE++
Sbjct: 624 LGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEIS 672
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 144/314 (45%), Gaps = 35/314 (11%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE--AEPNEATLVNVLSACSSISALSFG 61
++ V+W+ M+G Y F EA+ +F ++ K+ + TL V+ C++++ LS G
Sbjct: 285 KNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTG 344
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H Y + + + +VGN +++MY KCG + A++ FN + +D +S++ +ISG
Sbjct: 345 TCLHCY-AIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQ 403
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV---- 177
NG + L++F M ++G+ P+ T +++ AC+H + G + S Y I+
Sbjct: 404 NGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYG-----SCSHCYAIICGFT 458
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDP 233
T ++DMY + G ++ A M S W ++ A IH +FD
Sbjct: 459 ADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVS-WNTMIIAYGIHGIGLEALLLFDN 517
Query: 234 IRQELVNKKGVSVGT-----------------FALMSNTFAGADRWEDANKIRDEIRRMG 276
++ E + V+ F M+ F R E + D + R G
Sbjct: 518 MQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAG 577
Query: 277 LKKKTGCSWIEVNP 290
L K+ S+IE P
Sbjct: 578 LFKEVH-SFIEKMP 590
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 27/234 (11%)
Query: 1 MPKR--DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP R +VV W +I YA G EEA+ ++ +M PN T VL ACS++
Sbjct: 77 MPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYG-ITPNRFTFPFVLKACSALKEA 135
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
S G+ +H I R L + V A+++ Y KCG + A +VF+ + +D+++W+++ISG
Sbjct: 136 SEGREIHCDIK-RLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILF 167
+++ + + + N V P+ T + ++ A + HG V +G
Sbjct: 195 FSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGF--- 251
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V ++V T ++D+YG+ ++ A M I W A++ A
Sbjct: 252 -----VGDVVVGTG----ILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 48 VLSACSSISALSFGQYVHSYI------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
+L +C +L G+ +H ++ + +L+ ++ ++++Y+ C ++ IA VF
Sbjct: 15 LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74
Query: 102 NMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC----- 154
+ + + K+++ W+ +I A NG +A+ L+ M+ G+ P+ TF ++ AC
Sbjct: 75 DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134
Query: 155 -SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
S G + + + S VY +VD Y + G L++A+ +M + +
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTA-------LVDFYAKCGCLDDAKEVFDKMH-KRDVV 186
Query: 214 VWGALLNACRIHRNDEMFDPIRQELVN 240
W ++++ +H +D + + LV
Sbjct: 187 AWNSMISGFSLHEGS--YDEVARLLVQ 211
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 191/290 (65%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +DV+SW T+IGGY +EA+ +FQ+M ++ E +PN+ T++++LSAC+ + A+
Sbjct: 296 LSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGE-KPNDVTMLSILSACAHLGAIDI 354
Query: 61 GQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI R ++ ++ + ++I+MY KCGD+ A QVF+ + + + SW+ +I G
Sbjct: 355 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G A +FS M NG+ PDD+TF+ L+SACSH G++D G +F++M+ Y+++P+
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPK 474
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + Q L+
Sbjct: 475 LEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLI 534
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A+RW + K R + G+KK GCS IE++
Sbjct: 535 KIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEID 584
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 135/234 (57%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW I GYAE G +EA+ +F++M KT P+E+T+V VLSAC+ ++
Sbjct: 195 IPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTN-VRPDESTMVTVLSACAQSGSIEL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I+ + + + NA+I++Y KCG++ A +F L+ KD+ISW+T+I G
Sbjct: 254 GRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYT 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++SAC+H G +D G + + + V
Sbjct: 313 HMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNA 372
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A+ M + S W A++ +H R + FD
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANAAFD 425
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TM G+A A+ ++ M PN T +L +C+ A GQ +H +
Sbjct: 71 WNTMFRGHALSSDPVSALKLYVCMVSLGLL-PNSYTFPFLLKSCAKSXAFKEGQQLHGQV 129
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQV---------------------------- 100
++ + + ++I+MYV+ G + A +V
Sbjct: 130 -LKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESA 188
Query: 101 ---FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
F+ + KD++SW+ ISG A G ++AL+LF M+ V PD+ T + ++SAC+
Sbjct: 189 HKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQS 248
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
G ++ G + ++ + + ++D+Y + G LE A
Sbjct: 249 GSIELGRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETA 289
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 30/143 (20%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
AI VF+ + ++ W+T+ G A++ AL+L+ M+ G+ P+ TF L+ +C+
Sbjct: 56 AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115
Query: 156 ----------HGGLV----DQGLILFKAMSTVY----------EIVPQTQH-----YACV 186
HG ++ D L + ++ ++Y ++ ++ H Y +
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175
Query: 187 VDMYGRAGLLEEAEAFIREMPIE 209
+ Y G +E A E+P++
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVK 198
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 190/293 (64%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTT+I GYA+ EA+ +F++M+ +E EP+E ++ VLSAC+ + AL
Sbjct: 214 MPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQ-LEEVEPDEIAMLAVLSACADLGALEL 272
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI + +L NA+I+MY K G++ A++VF + K +I+WSTVI+ LA
Sbjct: 273 GEWIHNYIEKHGLCRIVSLY-NALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALA 331
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A+ +F M V P++VTF+A++SACSH G+VD G F M ++Y+I P+
Sbjct: 332 LHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKI 391
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ RAG L+EA+ + +MP EA +WG+LL A HR+ E+ + L
Sbjct: 392 EHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAASNTHRDAELAQLALKHLAK 451
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+SNT+A +W ++ +R +R G+KK G S IE+N ++
Sbjct: 452 LEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVY 504
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 32/217 (14%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVS-------------------- 77
P+ ++ +VL A +SA+ G+ +H+ +S+ D+ V+
Sbjct: 119 RPDSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARK 178
Query: 78 --NLVG-------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ VG NA++ YVK G++ A +VFN + +++ISW+T+I+G A +A
Sbjct: 179 LFDFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEA 238
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
++LF M + V PD++ +A++SAC+ G ++ G + + + + Y ++D
Sbjct: 239 IELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEK-HGLCRIVSLYNALID 297
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
MY ++G + A M + W ++ A +H
Sbjct: 298 MYAKSGNIRRALEVFENMK-QKSVITWSTVIAALALH 333
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/294 (43%), Positives = 183/294 (62%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW+TMI G+A G +EA F+E+ + +E NE +L VLSAC+ A F
Sbjct: 226 MPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLR-EEIRTNEVSLTGVLSACAQAGAFEF 284
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G+ +H ++ L V + V NA+I+ Y KCG+V +A VF NM + ++SW+++I+GL
Sbjct: 285 GKILHGFVEKAGFLYVGS-VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGL 343
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+GCG +A+QLF M +GV PD +TFI+L+ ACSH GLV++G LF M +Y I P
Sbjct: 344 AMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPA 403
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+YGRA L++A FI EMP+ +W LL AC IH N EM + ++ L
Sbjct: 404 IEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLA 463
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D + IR + +KK G S IE++ I+
Sbjct: 464 EMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIY 517
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+I YAE G A VF EM +EPN T VL+A + Q V +
Sbjct: 142 TTLISMYAECGDSGSARRVFDEM-----SEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMP 196
Query: 70 TRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R NL N ++ Y K G++G+A +VF + +D +SWST+I G A NGC +A
Sbjct: 197 VR------NLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEA 250
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
F ++ + ++V+ ++SAC+ G + G IL + + + + A ++D
Sbjct: 251 FGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNA-LID 309
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGV 244
Y + G + A + MP+ W +++ +H E +F + + V G+
Sbjct: 310 TYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGI 369
Query: 245 S 245
+
Sbjct: 370 T 370
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P D T+I + ++ F ++ + P+ T L A ++ L
Sbjct: 62 FPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRP 121
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS + R+ VG +I+MY +CGD G A +VF+ ++ ++++W+ V++
Sbjct: 122 GIQLHSQ-AFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAF 180
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A +F M + + ++ +++ + G + +F M E+
Sbjct: 181 RCGDVEGAQDVFGCMPVRNL----TSWNGMLAGYAKAGELGLARRVFYEMPLRDEVS--- 233
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA----EWSVWGALLNAC 222
++ ++ + G +EA F RE+ E E S+ G +L+AC
Sbjct: 234 --WSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTG-VLSAC 276
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 189/286 (66%), Gaps = 3/286 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVV+W+ +I GY + G EAV +F EM ++ +P+E +V+++SACS + +L
Sbjct: 278 PERDVVAWSALISGYVQNGQPNEAVKIFLEM-CSRNVKPDEFIMVSLMSACSQMGSLELA 336
Query: 62 QYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V Y+ + D+ ++++ A+I+M KCG + A ++F + +D+IS+ +++ GL+
Sbjct: 337 KWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLS 395
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++GCG QA+ LFS M+ G+ PDDV F +++ACS GLVD+G F++M T Y IVP
Sbjct: 396 IHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSP 455
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+ GRAG L+EA ++ MP+E WGALL AC++H + E+ + + +L
Sbjct: 456 DHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLFE 515
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
+ + G + L+SN +A A++W D + +R+++R G++K GCSWI
Sbjct: 516 LEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 10/207 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT MI GYA EA +F EM E N + ++S L
Sbjct: 184 MGERNVVSWTAMIAGYASFSDLVEARKLFDEM-----PEKNAVSWNAIISGYVKCGDLRS 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R +S + + I+ Y K GD+ A VF +D+++WS +ISG
Sbjct: 239 ARKMFDEMPHRNVVSFTTM-----IDGYAKSGDMASARFVFEEAPERDVVAWSALISGYV 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+++F M V PD+ ++L+SACS G ++ + + V +
Sbjct: 294 QNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRA 353
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
A ++DM + G ++ A EMP
Sbjct: 354 HVIAALIDMNAKCGSMDRATKLFEEMP 380
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 110/219 (50%), Gaps = 20/219 (9%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W T I GY+E VS+F M+++ +A P++ T +++ ACS + + G H
Sbjct: 88 TVLWNTYIKGYSENYSVSLTVSLFIRMKRS-DAVPDKFTYPSLIKACSKVCGVKEGVAFH 146
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R + V ++I++Y KCG++ A +VF+ + ++++SW+ +I+G A
Sbjct: 147 GS-AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDL 205
Query: 126 RQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ-- 181
+A +LF M P+ V++ A+IS G V G + ++ +++ +P
Sbjct: 206 VEARKLFDEM------PEKNAVSWNAIIS-----GYVKCGDL--RSARKMFDEMPHRNVV 252
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ ++D Y ++G + A E P E + W AL++
Sbjct: 253 SFTTMIDGYAKSGDMASARFVFEEAP-ERDVVAWSALIS 290
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Query: 28 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87
F + T + +++ +L AC++ S L + VH+ I R L + + + + +
Sbjct: 11 TFPDYLPTLRSFDTTSSISTLLKACTTTSTL---EQVHARI-IRKGLHQDHFIISQFLTL 66
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ VFN ++ + W+T I G + N + LF M + PD T+
Sbjct: 67 CNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTY 126
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+LI ACS V +G + F + + ++D+YG+ G + A EM
Sbjct: 127 PSLIKACSKVCGVKEG-VAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEM 184
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD++S+ +M+ G + G +AVS+F M + P++ +L+ACS +
Sbjct: 379 MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRM-LNEGLTPDDVAFTVILTACSRAGLVDE 437
Query: 61 GQYVHSYISTRYDL 74
G Y + T Y +
Sbjct: 438 GCYYFESMKTDYSI 451
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 188/291 (64%), Gaps = 2/291 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T+++VL AC+ + A+ G++
Sbjct: 260 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSVLPACAHLGAIDIGRW 318
Query: 64 VHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI R ++ ++ + ++I+MY KCGD+ A QVFN + +K + SW+ +I G AM+
Sbjct: 319 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 378
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G + LFS M G+ PDD+TF+ L+SACSH G++D G +F++M+ Y++ P+ +H
Sbjct: 379 GRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEH 438
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + Q L+ +
Sbjct: 439 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIE 498
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ ++ L+SN +A A RWED +IR + +KK GCS IEV+ +F
Sbjct: 499 PENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVF 549
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 135/236 (57%), Gaps = 9/236 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F+EM K P+E+T V VLSAC+ ++
Sbjct: 156 IPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN-VRPDESTYVTVLSACAHSGSIEL 214
Query: 61 GQYVHSYISTR-YDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ VHS++ +D SNL + NA+I++Y KCG+V A +F L+YKD+ISW+T+I G
Sbjct: 215 GRQVHSWVDDHGFD---SNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGG 271
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 272 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVT 331
Query: 179 QTQHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A M + S W A++ +H R D FD
Sbjct: 332 NASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMIFGFAMHGRADASFD 386
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 32/221 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TMI G+A +++++ M PN T +L +C+ + GQ +H +
Sbjct: 32 WNTMIRGHALSSDPVSSLTLYVCMVSLGLL-PNSYTFPFLLKSCAKSKTFTEGQQIHGQV 90
Query: 69 -STRYDLS-------VSNLVGN----------------------AVINMYVKCGDVGIAI 98
+DL +S V N A+I Y GD+ A
Sbjct: 91 LKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQ 150
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
++F+ + KD++SW+ +ISG A GC ++AL+LF M+ V PD+ T++ ++SAC+H G
Sbjct: 151 KLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSG 210
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
++ G + + + + ++D+Y + G +E A
Sbjct: 211 SIELGRQVHSWVDD-HGFDSNLKIVNALIDLYSKCGEVETA 250
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + SW MI G+A G + + +F M K EP++ T V +LSACS L
Sbjct: 360 MLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IEPDDITFVGLLSACSHSGMLDL 418
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+++ ++ Y ++ +I++ G A ++ N + + D + W +++
Sbjct: 419 GRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 478
Query: 120 AMNG 123
M+G
Sbjct: 479 KMHG 482
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 178/289 (61%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT M+ GYA+ G +EA+ FQ+M+ E +E TL V+SAC+ + A+
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKH 293
Query: 61 GQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
++ I+ R S +VG+A+I+MY KCG A +VF ++ +++ S+S++I G
Sbjct: 294 ANWIRD-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILG 352
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G ALQLF M+ + P+ VTFI ++SACSH GLV+QG LF M + + P
Sbjct: 353 YAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HYAC+VD+ GRAG LEEA ++ MP+E VWGALL ACRIH N ++ EL
Sbjct: 413 SPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANEL 472
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +G + L+SN +A A RWE+ +K+R IR G KK GCSW E
Sbjct: 473 FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 37/282 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
WT MI GYA +G E+ + + M + P T + AC + + G+ VH+
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVG-PVSFTFSALFKACGAALNMDLGKQVHAQT 168
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-------------MLAY--------- 106
+ VGN++I++YVKCG +G A +VF+ ++AY
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228
Query: 107 ---------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
KDM++W+ +++G A NG ++AL+ F M G+ D+VT +ISAC+
Sbjct: 229 SGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL 288
Query: 158 GLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G V I A + + + ++DMY + G +EA M +S
Sbjct: 289 GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS 348
Query: 217 ALLNAC---RIHRNDEMF-DPIRQELVNKKGVSVGTFALMSN 254
+L R H ++F D ++ E+ K +G + S+
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 105/240 (43%), Gaps = 12/240 (5%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA---I 98
E L+++L C+ S + + VH++I R LS + V +I M K DV + +
Sbjct: 42 EWRLMSILHDCTLFSQI---KQVHAHI-IRNGLSQCSYVLTKLIRMLTKV-DVPMGSYPL 96
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
VF + Y + W+ +I G A+ G ++ ++ M +GV P TF AL AC
Sbjct: 97 LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
+D G + + ++D+Y + G L A EM E + W L
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMS-ERDVVSWTEL 215
Query: 219 LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ A + + E + +L +K V+ + M +A R ++A + +++ +G++
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVA---WTAMVTGYAQNGRPKEALEYFQKMQDVGME 272
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 193/285 (67%), Gaps = 5/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWT MI GYA+ G ++ + +F+ M+ +PNE T+V+VLSAC++++AL
Sbjct: 283 MPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEE 342
Query: 61 GQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++VH++I ++ + ++N +G A+I+MY KCG IA+++FN L K++ +W+ +I+
Sbjct: 343 GRWVHAFID-KHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITR 401
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAMNG + ++ F M G P+D+TF+ +++ACSHGGLVD+G F++M++ + P
Sbjct: 402 LAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQP 461
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VDM GRAGLLEEAE IR MP+ + V+GALL ACR+H+ ++ + ++ E+
Sbjct: 462 EVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEI 521
Query: 239 --VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+N G L+S+ +A A +W D + R ++R G++K T
Sbjct: 522 HSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWT 566
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 15/233 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+TM+GGYA G + A +F M NV++ S ++ +
Sbjct: 188 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR---------NVVTWNSMVTGFAR 238
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ ++ V NLV NA++ Y D+ A ++F+++ KD++SW+ +ISG
Sbjct: 239 HGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGY 298
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + L+LF M + V P++VT ++++SAC++ +++G + A +++V
Sbjct: 299 AQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWV-HAFIDKHKMVL 357
Query: 179 QTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
++ A ++DMY + G + A + S W AL+ ++ N +
Sbjct: 358 NNEYNLGAALIDMYAKCGRTDIAVKIFNSLD-RKNVSAWNALITRLAMNGNAQ 409
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N VI YVKCG++ A +VF+ + ++ +SWST++ G A G A ++F M G
Sbjct: 166 NTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIG-- 223
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST------------------------VYEIV 177
+ VT+ ++++ + GL+ +F M +++++
Sbjct: 224 RNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVM 283
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEA 210
P+ + C++ Y +AG ++ R M E+
Sbjct: 284 PEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTES 318
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 189/288 (65%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V+SWT MI G A+ C +A+ +FQEM +P+E T+ +VLSACS + L
Sbjct: 350 MPIRNVISWTCMISGCAQANQCSDALKLFQEMMDA-NVKPDEITVSSVLSACSHLGLLDT 408
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH Y+ R+D+ VGNA+I+MY KCG V A++VF+ + KD +SW+++I GLA
Sbjct: 409 GQTVHEYM-CRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLA 467
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +LFS M+ +G+ P +FI ++ AC+H GLVD+GL F++M VY + P+
Sbjct: 468 VNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEM 527
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G L+ A FI++MP+ + +W LL+AC++HRN + + +L+
Sbjct: 528 KHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLE 587
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SNT+AG+DRW+DA+++RD + ++K + S IEV
Sbjct: 588 LDPSNSGNYVLLSNTYAGSDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 145/292 (49%), Gaps = 38/292 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW ++I GY++ +E + +F M + + T+V V+ ACS +
Sbjct: 218 MDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREA-NVTADSVTMVKVILACSYLCEDGV 276
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ YI ++ + + +GN++I+MY + G V +A +VF+ + K+++SW+ +++G A
Sbjct: 277 VDSMVKYIEDKH-VDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYA 335
Query: 121 --------------------------MNGCGR-----QALQLFSLMIINGVFPDDVTFIA 149
++GC + AL+LF M+ V PD++T +
Sbjct: 336 TAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSS 395
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SACSH GL+D G + + M ++I ++DMY + G++++A +M +
Sbjct: 396 VLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKK 454
Query: 210 AEWSVWGALLNACRIHRN-DEMFDPIRQELVNKKGVSVGTF--ALMSNTFAG 258
S W +++ ++ D +F+ Q L + + G+F L++ T AG
Sbjct: 455 DSVS-WTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAG 505
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 10 TTMIGGYAERGFCE-----EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
T +I Y RG + EA+ ++ ++ + + T + + ACS + + GQ
Sbjct: 120 TLLIFNYLIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVF 179
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + + N++I MY G++G A +VF+ + +D++SW+++I G +
Sbjct: 180 HVQV-LKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNR 238
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSH---GGLVDQGLILFKAMSTVYEIVPQTQ 181
++ L LF+LM V D VT + +I ACS+ G+VD + + ++
Sbjct: 239 FKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNS 298
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMYGR GL++ A M E W A+L
Sbjct: 299 ----LIDMYGRRGLVDLARRVFDRMQ-EKNIVSWNAML 331
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V WT MI G G A+ VF+ M++ ++ PNE T+V VLSACS + AL G++
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQR-EDVMPNEVTIVCVLSACSELGALQLGRW 270
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V SY+ ++ + +++ VG A+INMY +CGD+ A +VF + K++I+++++I G A++G
Sbjct: 271 VRSYMD-KHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHG 329
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A++LF +I G P VTF+ +++ACSHGGL + G +F +M+ Y I PQ +HY
Sbjct: 330 KSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHY 389
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GR G LEEA +FIR M + + + GALL+AC+IH N E+ + + + LV K
Sbjct: 390 GCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKN 449
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN ++ + +W++A ++R +R G++K+ GCS IEVN I
Sbjct: 450 ADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEI 498
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 25/222 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T +I G + + + ++ +M + P+ + +VL AC AL G+ V
Sbjct: 94 NVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLV-PDSYAVTSVLKACGCHLALKEGREV 152
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN------------MLAY------ 106
HS + + LS + + +I +Y KCG A +VF+ M+ Y
Sbjct: 153 HSQV-LKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI 211
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
KD + W+ +I GL NG +AL++F M V P++VT + ++SACS G + G +
Sbjct: 212 KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWV 271
Query: 167 FKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREM 206
M + I + H+ +++MY R G ++EA+ +M
Sbjct: 272 RSYMDK-HRI--ELNHFVGGALINMYSRCGDIDEAQRVFEQM 310
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 40/162 (24%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISAL 58
M +++V+++ +MI G+A G EAV +F+ + K + P+ T V VL+ACS ++ L
Sbjct: 310 MKEKNVITYNSMIMGFALHGKSVEAVELFRGLIK-QGFTPSSVTFVGVLNACSHGGLAEL 368
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
F + HS D GI Q+ + + ++
Sbjct: 369 GF-EIFHSMAK-----------------------DYGIEPQIEH---------YGCMVDL 395
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-HGGL 159
L G +A +M V PD V AL+SAC HG L
Sbjct: 396 LGRLGRLEEAYSFIRMM---KVAPDHVMLGALLSACKIHGNL 434
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW +I GYA+ G+ EEA+ +F EM++ E N +T + LS C+ I+AL
Sbjct: 273 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALEL 331
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + L VGNA++ MY KCG++ A VF + K+++SW+T+I+G A
Sbjct: 332 GKQVHGRV-VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 390
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL LF M G+ PDDVT + ++SACSH GLVD+G F +M+ Y I +
Sbjct: 391 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANS 450
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L++A+ ++ MP E + + WGALL A RIH N E+ + + +
Sbjct: 451 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE 510
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW D ++R +R G+KK G SW+EV I
Sbjct: 511 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 562
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW M+ GYA+ G+ +EA +F EM N + +L+A +
Sbjct: 56 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGMLAAYVQNGRIED 110
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ D + + N ++ YVK + A +F+ + +D +SW+T+ISG A
Sbjct: 111 ARRL---FESKADWEL--ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 165
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A +LF + VF T+ A++S G++D+ +F M +
Sbjct: 166 QNGELLEAQRLFEESPVRDVF----TWTAMVSGYVQNGMLDEARRVFDGMPEKNSVS--- 218
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++ Y + +++A MP +
Sbjct: 219 --WNAIIAGYVQCKRMDQARELFEAMPCQ 245
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT M+ GY + G +EA VF M E N + +++ +
Sbjct: 181 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-----PEKNSVSWNAIIAGYVQCKRMDQA 235
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + + + +VS+ N +I Y + GD+ A F+ + +D ISW+ +I+G A
Sbjct: 236 RELFEAMPCQ---NVSSW--NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 290
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
+G G +AL LF M +G + TF + +S C+ HG +V GL
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL 344
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
V+ ++ A +F+ + +D++SW+ ++SG A NG ++A ++F M + +++
Sbjct: 41 VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWN 96
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+++A G ++ LF++ + +E++ + C++ Y + L +A MP
Sbjct: 97 GMLAAYVQNGRIEDARRLFESKAD-WELIS----WNCMMGGYVKRNRLVDARGIFDRMPE 151
Query: 209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFAGADRWEDANK 267
E S W +++ +N E+ + Q L + V V T+ M + + N
Sbjct: 152 RDEVS-WNTMISG--YAQNGELLEA--QRLFEESPVRDVFTWTAMVSGYV-------QNG 199
Query: 268 IRDEIRRM--GLKKKTGCSW 285
+ DE RR+ G+ +K SW
Sbjct: 200 MLDEARRVFDGMPEKNSVSW 219
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 38/222 (17%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS-------- 133
NA+++ Y + G V A ++F+ + K+ ISW+ +++ NG A +LF
Sbjct: 65 NAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELI 124
Query: 134 --------------LMIINGVFP-----DDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
L+ G+F D+V++ +IS + G + + LF+ S V
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVR 183
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEM 230
++ T +V Y + G+L+EA MP E W A++ R+ + E+
Sbjct: 184 DVFTWT----AMVSGYVQNGMLDEARRVFDGMP-EKNSVSWNAIIAGYVQCKRMDQAREL 238
Query: 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272
F+ + + V+ + +A + A A + D RD I
Sbjct: 239 FEAMPCQNVSSWNTMITGYA-QNGDIAQARNFFDRMPQRDSI 279
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW +I GYA+ G+ EEA+ +F EM++ E N +T + LS C+ I+AL
Sbjct: 354 MPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE-RLNRSTFTSTLSTCAEIAALEL 412
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + L VGNA++ MY KCG++ A VF + K+++SW+T+I+G A
Sbjct: 413 GKQVHGRV-VKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYA 471
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL LF M G+ PDDVT + ++SACSH GLVD+G F +M+ Y I +
Sbjct: 472 RHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANS 531
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L++A+ ++ MP E + + WGALL A RIH N E+ + + +
Sbjct: 532 KHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFE 591
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + RW D ++R +R G+KK G SW+EV I
Sbjct: 592 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKI 643
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW M+ GYA+ G+ +EA +F EM N + +L+A +
Sbjct: 137 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK-----NSISWNGMLAAYVQNGRIED 191
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ D + + N ++ YVK + A +F+ + +D +SW+T+ISG A
Sbjct: 192 ARRL---FESKADWEL--ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYA 246
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A +LF + VF T+ A++S G++D+ +F M +
Sbjct: 247 QNGELLEAQRLFEESPVRDVF----TWTAMVSGYVQNGMLDEARRVFDGMPEKNSV---- 298
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++ Y + +++A MP +
Sbjct: 299 -SWNAIIAGYVQCKRMDQARELFEAMPCQ 326
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT M+ GY + G +EA VF M E N + +++ +
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGM-----PEKNSVSWNAIIAGYVQCKRMDQA 316
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + + + +VS+ N +I Y + GD+ A F+ + +D ISW+ +I+G A
Sbjct: 317 RELFEAMPCQ---NVSSW--NTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 371
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
+G G +AL LF M +G + TF + +S C+ HG +V GL
Sbjct: 372 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGL 425
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 36/285 (12%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V W I + G C+ A+ +F M + N ++S C S + +
Sbjct: 48 DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNA-----MISGCLSNDKFYLARQL 102
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ TR +LV N +I+ V+ ++ A +F+ + +D++SW+ ++SG A NG
Sbjct: 103 FEKMPTR------DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNG 156
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++A ++F M + +++ +++A G ++ LF++ + +E++ +
Sbjct: 157 YVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGRIEDARRLFESKAD-WELIS----W 207
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C++ Y + L +A MP E S W +++ +N E+ + Q L +
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPERDEVS-WNTMISG--YAQNGELLEA--QRLFEESP 262
Query: 244 V-SVGTFALMSNTFAGADRWEDANKIRDEIRRM--GLKKKTGCSW 285
V V T+ M + + N + DE RR+ G+ +K SW
Sbjct: 263 VRDVFTWTAMVSGYV-------QNGMLDEARRVFDGMPEKNSVSW 300
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 188/290 (64%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +DV+SW TMIGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+ F
Sbjct: 296 LSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDF 354
Query: 61 GQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI R ++ ++ + ++I+MY KCGD+ A QVFN + ++ + + + +I G
Sbjct: 355 GRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGF 414
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G A +FS M NG+ PDD+TF+ L+SACSH G++D G +F++M+ Y+I P+
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPK 474
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ G GL +EAE I M +E + +W +LL AC++H N E+ + Q+L+
Sbjct: 475 LEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLI 534
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + IR + G+KK GCS IE++
Sbjct: 535 KIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 122/207 (58%), Gaps = 3/207 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW +I GYA+ G +EA+ +F+EM KT +P+E+T+V V+SAC+ ++
Sbjct: 195 IPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT-NVKPDESTMVTVVSACAQSGSIQL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I + L + + NA+I++Y KCG+V A +F L+ KD+ISW+T+I G
Sbjct: 254 GRQVHSWIDD-HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
++AL LF M+ +G P+DVT ++++ AC+ G +D G I + +
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNA 372
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++DMY + G +E A M
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAHQVFNSM 399
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 36/227 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ + GQ +
Sbjct: 67 NLLIWNTMFRGHALSSDPVSAIKLYVCM-ISLGLLPNSYTFPFLLKSCAKLKVSKEGQQI 125
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGD------------------------------ 93
H ++ Y+L + V ++I+MYVK G
Sbjct: 126 HGHVLKLGYELDL--YVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183
Query: 94 -VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A ++F+ + KD++SW+ +ISG A G ++AL LF M+ V PD+ T + ++S
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
AC+ G + G + + + + + ++D+Y + G +E A
Sbjct: 244 ACAQSGSIQLGRQVHSWIDD-HGLGSNLKIVNALIDLYSKCGEVETA 289
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW MI GYA+RG EA+++F+ M+ + NE ++++V++AC+ + AL
Sbjct: 202 MPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQ-MDGVKVNEVSMISVVTACTHLGALDQ 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H+YI NL G A+++MY KCG+V A++VF + K++ +WST I GLA
Sbjct: 261 GKWAHAYIEKNKIQMTVNL-GTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLA 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G++ L+LFS M G+ P+++TFI+++ CS G VD+G F +M + I P+
Sbjct: 320 MNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRL 379
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG LEEA FI MP++ WGALLNACR+++N E+ + ++L+
Sbjct: 380 EHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIE 439
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G + G + +SN +A W+ + +R ++ G+ K GCS +EVN +
Sbjct: 440 VEGKNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEV 491
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KCGD+G A +F+ + +D +SW+ +I+G A G R+AL LF LM ++GV ++V+ I+
Sbjct: 188 KCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMIS 247
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+++AC+H G +DQG A +I +VDMY + G ++ A EM
Sbjct: 248 VVTACTHLGALDQGKWA-HAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEM 303
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 186/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ MI GY G EA+ +F +++ T PN A +V L+ACS + +L
Sbjct: 200 MPERNEVSWSAMITGYVHMGMFREALELFNDLQLTG-LRPNHAGIVGALTACSYLGSLDH 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ R + ++G A+++MY KCG + IA VF + KD +++++ISGLA
Sbjct: 259 GRWIHAYVD-RNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLA 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A+QLF M V P++VTFI ++SACS GLVD+GL +F MS VY I P
Sbjct: 318 NHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGV 377
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAGLLEEA+ +REMP+E + V GALLN+CR+H + E+ + LV
Sbjct: 378 QHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVE 437
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+SN +A +++W+ K+R E+ +KK GCS IE++ S+
Sbjct: 438 RGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSV 489
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 30/235 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R W T+I + E+ A+S+++ M +T PN T VL AC+ S +
Sbjct: 70 LPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFL-PNNYTFSFVLRACTDNSPVGL 128
Query: 61 GQY------------------VHSYIS--------TRYDLSVSN--LVGNAVINMYVKCG 92
+ +H Y + +D+S + A+IN YVK G
Sbjct: 129 ASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSG 188
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
V A ++F+ + ++ +SWS +I+G G R+AL+LF+ + + G+ P+ + ++
Sbjct: 189 HVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALT 248
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
ACS+ G +D G + + + + A +VDMY + G +E A + +MP
Sbjct: 249 ACSYLGSLDHGRWIHAYVDRNGTELDRVLGTA-LVDMYAKCGCIEIACSVFEKMP 302
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW +I GY + +EA+ VFQEM + EPN++T+ + L+AC+ + +L
Sbjct: 266 MPTRNLVSWGALIAGYVQCNRYKEALKVFQEM-IIEGIEPNQSTVTSALTACAQLGSLDQ 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y+ R L +++ +G A+++MY KCG V A+ VF L KD+ W+ +I+GLA
Sbjct: 325 GRWLHEYVD-RSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G +L LFS MI + V P+ VTF+ ++SAC+HGGLVD+GL LF+ M Y + P
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG LEEA FI MP+E VWGAL + C IH+ E+ + I L+
Sbjct: 444 DHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCMIHKAFELGEHIGNHLIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N ++ +WE A +R ++ G+ K CSWIEVN I
Sbjct: 504 LQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPACSWIEVNGVI 555
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 9/248 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+DVVSWT +I G G EA+ F EM ++ E +E T+V+VL A + + + FG+
Sbjct: 166 KKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVTVVSVLCAAAMLRDVWFGR 224
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VH + + VG+A+++MY KCG A++VFN + ++++SW +I+G
Sbjct: 225 WVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQC 284
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
++AL++F MII G+ P+ T + ++AC+ G +DQG L + + ++ ++
Sbjct: 285 NRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRS-KLGLNSKL 343
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFDPIRQE 237
+VDMY + G ++EA ++P + + W A++N + R D +F + +
Sbjct: 344 GTALVDMYSKCGCVDEALLVFEKLPAKDVYP-WTAMINGLAM-RGDALSSLNLFSQMIRS 401
Query: 238 LVNKKGVS 245
V GV+
Sbjct: 402 RVQPNGVT 409
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 28/223 (12%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGQYVHSY 67
W T++ ++ + + + + + P+ T +L A S + + F Y H
Sbjct: 72 WNTIVRSFSASSQPQMVLVAYSRL-RNHGVIPDRHTFPLLLKAFSKLRNENPFQFYAHI- 129
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ L V N++++ + CG V + ++F A KD++SW+ +I+G NG +
Sbjct: 130 --VKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVE 187
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEI 176
AL+ F M +GV D+VT ++++ A + HG V+ G +++
Sbjct: 188 ALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVG---- 243
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +VDMY + G ++A EMP S WGAL+
Sbjct: 244 -------SALVDMYSKCGYCDDAVKVFNEMPTRNLVS-WGALI 278
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 178/289 (61%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT M+ GYA+ G +EA+ FQ+M+ E +E TL V+SAC+ + A+
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVG-METDEVTLAGVISACAQLGAVKH 293
Query: 61 GQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
++ I+ R S +VG+A+I+MY KCG A +VF ++ +++ S+S++I G
Sbjct: 294 ANWIRD-IAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILG 352
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G ALQLF M+ + P+ VTFI ++SACSH GLV+QG LF M + + P
Sbjct: 353 YAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAP 412
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HYAC+VD+ GRAG LEEA ++ MP+E VWGALL ACRIH N ++ EL
Sbjct: 413 SPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANEL 472
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +G + L+SN +A A RWE+ +K+R IR G KK GCSW E
Sbjct: 473 FKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 37/282 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
WT MI GYA +G E+ + + M + P T + AC + + G+ VH+
Sbjct: 110 WTAMIRGYALQGLLSESTNFYTRMRRDGVG-PVSFTFSALFKACGAALNMDLGKQVHAQT 168
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-------------MLAY--------- 106
+ VGN++I++YVKCG +G A +VF+ ++AY
Sbjct: 169 ILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESA 228
Query: 107 ---------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
KDM++W+ +++G A NG ++AL+ F M G+ D+VT +ISAC+
Sbjct: 229 SGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQL 288
Query: 158 GLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G V I A + + + ++DMY + G +EA M +S
Sbjct: 289 GAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSS 348
Query: 217 ALLNAC---RIHRNDEMF-DPIRQELVNKKGVSVGTFALMSN 254
+L R H ++F D ++ E+ K +G + S+
Sbjct: 349 MILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSH 390
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA---I 98
E L+++L C+ S + + VH++I R LS + V +I M K DV + +
Sbjct: 42 EWRLMSILHDCTLFSQI---KQVHAHI-IRNGLSQCSYVLTKLIRMLTKV-DVPMGSYPL 96
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
VF + Y + W+ +I G A+ G ++ ++ M +GV P TF AL AC
Sbjct: 97 LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+D G + + ++D+Y + G L A EM
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM 204
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY + G EA+ +F+EM+ +K +E T+V+V++AC+ + AL
Sbjct: 215 MPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSK-VRADEFTMVSVVTACAQLGALET 273
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ Y+S R+ + + VGNA+++MY KCG + A+ VF + +D +W+ VI GLA
Sbjct: 274 GEWARIYMS-RHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLA 332
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +A+ +F M+ PD+VTFI +++AC+H GLVD+G F +M+ Y I P
Sbjct: 333 VNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNV 392
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
H+ C++D+ GRAG L+EA I MP+ ++WG LL ACR+H N E+ + L+
Sbjct: 393 MHFGCLIDLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLAAEHLLE 452
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A ++RWED ++R I G+KK+ GCS IE+N +I
Sbjct: 453 LDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTI 504
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 35/254 (13%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W +I G+ + F +M +T P T + VLSAC + G VH
Sbjct: 89 VVWNALISGHRRSRQFRLSCCSFVDMVRTGVV-PTPVTYITVLSACGKDKYIWLGMQVHK 147
Query: 67 YISTRYDLSVSNLVGNAVINMYVKC-------------------------------GDVG 95
+ L VGNA+I+MY +C G V
Sbjct: 148 CVVASGVLPDLK-VGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVD 206
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +F+ + +D +SW+ +I G G R+AL++F M + V D+ T +++++AC+
Sbjct: 207 QARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACA 266
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
G ++ G MS + I T +VDMY + G +++A +EM I +++ W
Sbjct: 267 QLGALETGEWARIYMSR-HGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFT-W 324
Query: 216 GALLNACRIHRNDE 229
A++ ++ + E
Sbjct: 325 TAVILGLAVNGHGE 338
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT+MI GY + G +EA+ +F +ME+ + NE T+V VL+AC+ + AL
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLGALDL 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H Y S R+ + + N +I+MYVKCG + A +VF + + ++SWS +I GLA
Sbjct: 279 GMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL+LFS M G+ P+ VTFI L+ ACSH GL+ +G F +M+ Y I+PQ
Sbjct: 338 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQI 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGLL EA FI MP++ VWGALL ACR+H+N EM + + L+
Sbjct: 398 EHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + ++SN +A A RWED ++R ++ +KK G S I V+
Sbjct: 458 LDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 45/281 (16%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K + W + + AE +A+ +F + + + P+ T +VL AC ++ LS G+
Sbjct: 90 KPETFVWNSCLKALAEGDSPIDAIMLFYRL-RQYDVCPDTFTCSSVLRACLNLLDLSNGR 148
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+H + R +L + N++ +++Y CG++G A +F + +D+++W+ +I+ L
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMI----VHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 120 AMNG-----------------------------CGR--QALQLFSLMIINGVFPDDVTFI 148
G CG+ +A+ LF+ M GV ++VT +
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
A+++AC+ G +D G+ + + S + + ++DMY + G LEEA EM
Sbjct: 265 AVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME- 322
Query: 209 EAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS 245
E W A++ +H E +F + Q + GV+
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVT 363
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 183/293 (62%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D +SW ++I G + G +E + FQ+M K +PN + +++ AC+ ++ L
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTTLHL 355
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI +R+D +V + +A+++MY KCG++ A +F+ + DM+SW+ +I G
Sbjct: 356 GKQLHGYIIRSRFDGNV--FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGY 413
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G A+ LF M + GV P+ V F+A+++ACSH GLVD+ F +M+ Y I+P
Sbjct: 414 ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPG 473
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYA V D+ GR G LEEA FI +M IE SVW LL ACR+H+N E+ + + ++L
Sbjct: 474 LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLF 533
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++G + L+SN ++ A RW+DA K+R +R G+KKK CSWIE+ +
Sbjct: 534 TVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKV 586
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 16/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+VSW T+I G A+ G E+A+ + +EM + P+ TL +VL + L
Sbjct: 196 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNA-DLRPDSFTLSSVLPIFAEYVNLLK 254
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y I YD V +G+++I+MY KC V + +VF ML D ISW+++I+G
Sbjct: 255 GKEIHGYAIRNGYDADV--FIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGC 312
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVY 174
NG + L+ F M+I + P+ V+F +++ AC+H + G I+
Sbjct: 313 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 372
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
I + +VDMY + G + A +M + S W A++ +H
Sbjct: 373 FIA------SALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMIMGYALH 416
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 31/175 (17%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
++W ++I Y G ++S F +M + + P+ +VL +C+ + L FG+ VH
Sbjct: 71 TLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFGESVH 129
Query: 66 SYISTRYDLSVSNLVGNAVINMYVK------------------CGDV-----------GI 96
I R + NA++NMY K DV G
Sbjct: 130 GCI-IRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGS 188
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+VF M+ +D++SW+TVISG A NG AL + M + PD T +++
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT+MI GY + G +EA+ +F +ME+ + NE T+V VL+AC+ + AL
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLGALDL 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H Y S R+ + + N +I+MYVKCG + A +VF + + ++SWS +I GLA
Sbjct: 279 GMRIHEY-SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL+LFS M G+ P+ VTFI L+ ACSH GL+ +G F +M+ Y I+PQ
Sbjct: 338 MHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQI 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGLL EA FI MP++ VWGALL ACR+H+N EM + + L+
Sbjct: 398 EHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLE 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + ++SN +A A RWED ++R ++ +KK G S I V+
Sbjct: 458 LDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 506
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 127/281 (45%), Gaps = 45/281 (16%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K + W + + AE +A+ +F + + + P+ T +VL AC ++ LS G+
Sbjct: 90 KPETFVWNSCLKALAEGDSPIDAIMLFYRL-RQYDVCPDTFTCSSVLRACLNLLDLSNGR 148
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+H + R +L + N++ +++Y CG++G A +F + +D+++W+ +I+ L
Sbjct: 149 ILHGVVEKVGFRSNLYLQNMI----VHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQL 204
Query: 120 AMNG-----------------------------CGR--QALQLFSLMIINGVFPDDVTFI 148
G CG+ +A+ LF+ M GV ++VT +
Sbjct: 205 IKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 264
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
A+++AC+ G +D G+ + + S + + ++DMY + G LEEA EM
Sbjct: 265 AVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEME- 322
Query: 209 EAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS 245
E W A++ +H E +F + Q + GV+
Sbjct: 323 ERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVT 363
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+ V WT+MI GYA+ +EA+ +F+EM+ A + AT+ VLSAC AL+
Sbjct: 104 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFA-ADAATIACVLSACGHWGALAQ 162
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y R + + NA+I MY KCGD+ A+++F+ L D+ SWS VISGLA
Sbjct: 163 GRWIHLYCE-RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLA 221
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG +AL LFS M +I+ + P+++TF+ ++ AC+HGG VD+GL F AM+ +Y + P
Sbjct: 222 MNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPG 281
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FIR +PI+ + +W +LL ACR H N E+ + +++
Sbjct: 282 IEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIE 341
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN +A A RW D ++R ++ +KK+ GCS++E++
Sbjct: 342 ELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEID 391
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 34/157 (21%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG---- 95
P+ + VL AC+ +S L G+ +HS + + + + V NA+I+ + CG V
Sbjct: 8 PDNYSFPFVLKACARLSLLHKGREIHSS-TLKLGVHLDVFVQNALISAFSSCGAVEAARA 66
Query: 96 -----------------------------IAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+A++VF+ + +++ + W+++I+G A + +
Sbjct: 67 VFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFK 126
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+A++LF M I G D T ++SAC H G + QG
Sbjct: 127 EAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 163
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/291 (41%), Positives = 192/291 (65%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +DVV WT MI GY + +EAV++FQEM+ + +P++ LV +L+ C+ + AL G
Sbjct: 50 PVKDVVLWTAMINGYVQFNHFDEAVALFQEMQ-IQRVKPDKFVLVALLTGCAQMGALEQG 108
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++H YI + + V +VG ++I MY KCG + A+++F L KD +W+++I GLAM
Sbjct: 109 TWIHGYIDEK-GIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAM 167
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LFS M PD+VTFI ++SACSHGGLV++G F +M+++Y I P+ +
Sbjct: 168 NGKTSKALELFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLE 227
Query: 182 HYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HY C++D+ GRAG L+EAE I+++ E ++G+LL+ACRI++N +M + + ++L
Sbjct: 228 HYGCLIDLLGRAGQLDEAEELIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQL 287
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V + L++N +A A RW D N++R E++ +G+KK GCS IEV+
Sbjct: 288 VKIESRDSSVHTLLANIYASAGRWVDVNRVRREMKDLGVKKVPGCSSIEVD 338
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
++++ YV G++ A ++F KD++ W+ +I+G +A+ LF M I V
Sbjct: 27 TSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVK 86
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMS----TVYEIVPQTQHYACVVDMYGRAGLLE 197
PD +AL++ C+ G ++QG + + V +V + +++MY + G +E
Sbjct: 87 PDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTS-----LIEMYSKCGCIE 141
Query: 198 EAEAF---IREMPIEAEWS--VWGALLNACRIHRNDEMFDPIRQ 236
+A +RE A W+ + G +N + + E+F ++Q
Sbjct: 142 KALRIFCGLREKDT-ATWTSIICGLAMNG-KTSKALELFSKMKQ 183
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 187/291 (64%), Gaps = 5/291 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + E+A+++F EM+ + EP++ +V +L+ C+ + AL G
Sbjct: 302 PSRDVVLWTAMINGYVQFNHFEDAIALFGEMQ-IRGVEPDKFIVVTLLTGCAQLGALEQG 360
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H+YI + + +V A+I MY KCG + ++++FN L D SW+++I GLAM
Sbjct: 361 KWIHNYIDEN-RIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAM 419
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LF M G+ PDD+TF+A++SAC H GLV++G LF +MS++Y I P +
Sbjct: 420 NGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLE 479
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNACRIHRNDEMFDPIRQEL 238
HY C +D+ GRAGLL+EAE ++++P + ++GALL+ACR + N +M + + L
Sbjct: 480 HYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATAL 539
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K L+++ +A ADRWED K+R +++ +G+KK G S IEV+
Sbjct: 540 AKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVD 590
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 38/232 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW MI GY EEAV V++ M+ +PNEAT+V+ LSAC+ + L
Sbjct: 169 MPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLEL 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI+ DL + ++GNA+++MY KCG V +A ++F+ + K++ W+++++G
Sbjct: 229 GKEIHDYIANELDL--TPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYV 286
Query: 121 MNGCGR---------------------------------QALQLFSLMIINGVFPDDVTF 147
+ CG+ A+ LF M I GV PD
Sbjct: 287 I--CGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIV 344
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ L++ C+ G ++QG + + I +++MY + G +E++
Sbjct: 345 VTLLTGCAQLGALEQGKWIHNYIDE-NRIKMDAVVSTALIEMYAKCGCIEKS 395
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 129/287 (44%), Gaps = 17/287 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ MI + +RG A+S+FQ++ + + P+ T VL I + G+ +H+++
Sbjct: 76 YNLMIKAFVKRGSLRSAISLFQQL-RERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFV 134
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N++++MY + G V QVF + +D +SW+ +ISG +A
Sbjct: 135 -VKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEA 193
Query: 129 LQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
+ ++ M + + P++ T ++ +SAC+ ++ G + ++ ++ P + ++
Sbjct: 194 VDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGN--ALL 251
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247
DMY + G + A M ++ + W +++ I D R V
Sbjct: 252 DMYCKCGCVSVAREIFDAMIVK-NVNCWTSMVTGYVICGQ---LDQARYLFERSPSRDVV 307
Query: 248 TFALMSNTFAGADRWEDANKIRDEIRRMGLKKK--------TGCSWI 286
+ M N + + +EDA + E++ G++ TGC+ +
Sbjct: 308 LWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQL 354
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 87/198 (43%), Gaps = 9/198 (4%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
+ T +++L +C S+S L Q + D + N + +M GD A ++F
Sbjct: 8 KGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKL--MAFSMDSSLGDFNYANRIF 65
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
N + + + ++ +I G R A+ LF + GV+PD+ T+ ++ G V
Sbjct: 66 NHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVR 125
Query: 162 QGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+G K + V + + Y C ++DMY GL+E EMP E + W ++
Sbjct: 126 EGE---KIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMP-ERDAVSWNIMI 181
Query: 220 NA-CRIHRNDEMFDPIRQ 236
+ R R +E D R+
Sbjct: 182 SGYVRCKRFEEAVDVYRR 199
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 192/288 (66%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+V+WT MIGGYAE G +E++ +F + + + P++ +V++++AC+ + A++
Sbjct: 1242 MPSKDLVTWTVMIGGYAECGNAKESLVLFDHL-REEGFVPDKIAMVSIVNACAKLGAMNK 1300
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++VH Y++ R S+ ++G A+I+MY KCGDV A ++F+ + +K++ISWS +I+
Sbjct: 1301 ARFVHEYVN-RNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYG 1359
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL+LF +M+ +G+ P+++TF++L+ ACSH GLV+ GL L M + + P
Sbjct: 1360 YHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDI 1419
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+ C+VD+ GRAG L EA FI M +E + +W +LL ACRIH+ ++ + + L+
Sbjct: 1420 KHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGACRIHKRIDLAEKAAKSLLE 1479
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A A +W+D KIRD + + LKK G +WIE+
Sbjct: 1480 LQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIEL 1527
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 119/231 (51%), Gaps = 16/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW+ MIGG+ + G + F+E+ + +P+ TL V+ AC AL
Sbjct: 1141 MPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNG-VQPDNYTLPFVIKACRDTVALDM 1199
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + +Y L + + V A+++MY KC + A +F+++ KD+++W+ +I G A
Sbjct: 1200 GRLIHCVV-LKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYA 1258
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +++L LF + G PD + +++++AC+ G +++ V+E V +
Sbjct: 1259 ECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARF-------VHEYVNRN 1311
Query: 181 QHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G ++ A M + S W A++ A H
Sbjct: 1312 RFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVIS-WSAMIAAYGYH 1361
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
+PN L++ L C +I + + +H+ I+T L + V N ++ +YV + A
Sbjct: 1081 DPN--CLISTLLNCKNICQI---KQLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAY 1135
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+F+ + K+ +SWS +I G G Q + F +I NGV PD+ T +I AC
Sbjct: 1136 ALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTV 1195
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+D G ++ V + H+ C +VDMY + ++E+A+ MP + W+V
Sbjct: 1196 ALDMGRLIH---CVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTV 1252
Query: 215 W-GALLNACRIHRNDEMFDPIRQE 237
G + +FD +R+E
Sbjct: 1253 MIGGYAECGNAKESLVLFDHLREE 1276
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+ V WT+MI GYA+ +EA+ +F+EM+ A + AT+ VLSAC AL+
Sbjct: 292 IPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAA-DAATIACVLSACGHWGALAQ 350
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y R + + NA+I MY KCGD+ A+++F+ L D+ SWS VISGLA
Sbjct: 351 GRWIHLYCE-RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLA 409
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG +AL LFS M +I+ + P+++TF+ ++ AC+HGG VD+GL F AM+ +Y + P
Sbjct: 410 MNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPG 469
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FIR +PI+ + +W +LL ACR H N E+ + +++
Sbjct: 470 IEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACRNHGNIELAEFAAKQIE 529
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN +A A RW D ++R ++ +KK+ GCS++E++
Sbjct: 530 ELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEID 579
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 3/161 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSW +MI GY + E A+ VF E+ P+E TLV+ LS C + L G+
Sbjct: 193 RDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKK 252
Query: 64 VHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + + + L V VG+++I+MY KCG + A +VF+ + +++ + W+++I+G A +
Sbjct: 253 IHGLFTGSGFVLDV--FVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQS 310
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
++A++LF M I G D T ++SAC H G + QG
Sbjct: 311 DLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG 351
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V SW M Y+ F E ++++ M + P+ + VL AC+ +S L G+
Sbjct: 89 KPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTL-PDNYSFPFVLKACARLSLLHKGR 147
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDMISWSTVISGLA 120
+HS + + + + V NA+I+ + CG V A VF+ML +D++SW+++ISG
Sbjct: 148 EIHSS-TLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYL 206
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLI---LFKAMSTVYEI 176
+ AL++F ++ +G PD+VT ++ +S C GL+D G LF V ++
Sbjct: 207 QSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDV 266
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++DMY + G +E+A +P
Sbjct: 267 FVGSS----LIDMYSKCGQIEDARKVFDRIP 293
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 37/71 (52%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D + +F + ++ SW+ + + + + + L++LM+ NG PD+ +F ++
Sbjct: 76 DFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLK 135
Query: 153 ACSHGGLVDQG 163
AC+ L+ +G
Sbjct: 136 ACARLSLLHKG 146
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 183/293 (62%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++VSW+TMI GYA +A+ +F++M+ PN+ TLV+VLSAC+ + AL
Sbjct: 219 MMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDL 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H +I R + V +GNA+ +MY KCG V A VF+ + +D+ISWS +I GLA
Sbjct: 279 GKWIHRFIR-RNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G +A F+ MI +G+ P+D++F+ L++AC+H GLVD+GL F M VY I P+
Sbjct: 338 MYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKI 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ RAG L++AE+ I MP++ VWGALL CRI+++ E + + ++
Sbjct: 398 EHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILE 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G+ ++N +A R +DA R +R K GCSWIE+N S++
Sbjct: 458 LDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 510
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 111/235 (47%), Gaps = 35/235 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQ-EMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ ++ ++ +++ +S F ++ P+E T +VL AC+ ++ + GQ
Sbjct: 89 NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH ++ T+Y + V N+++++Y K G IA ++F+ + +D++SW+T+ISG +G
Sbjct: 149 VHCFV-TKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207
Query: 124 CGRQALQLFSLMIIN--------------------------------GVFPDDVTFIALI 151
+A +F M+ G+ P+DVT ++++
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVL 267
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
SAC+H G +D G + + + V A + DMY + G + EA+ EM
Sbjct: 268 SACAHLGALDLGKWIHRFIRRNKIEVGLFLGNA-LADMYAKCGCVLEAKGVFHEM 321
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 187/290 (64%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
+ +R+VV+WT MIGG+A+ G +A+ +F EM + PN T+ +L AC+ ++A+
Sbjct: 436 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 495
Query: 60 FGQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ +YD S + V N +INMY KCGDV A VF+ ++ K ISW+++++
Sbjct: 496 IGKQIHAYVLRHHQYD-SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 554
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +AL +F M G PDD+TF+ ++ ACSH G+VDQGL F +MS Y +
Sbjct: 555 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 614
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYA +D+ R G L++A +++MP+E VW ALL+ACR+H N E+ + +
Sbjct: 615 PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 674
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
LV + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 675 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 724
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 52/255 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F +M EK + ++VN+L AC S+ A+
Sbjct: 185 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 244
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------ 107
+ VH + R + VGNA+I+ Y KCG + A++VFNM+ +K
Sbjct: 245 QTKEVHGN-AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 303
Query: 108 -----------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
DM++W+ VI+G + GC +AL +F MI +G P+
Sbjct: 304 SQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNC 363
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH----------YACVVDMYGRAG 194
VT I+++SAC+ G QG+ + A S ++ Y ++DMY +
Sbjct: 364 VTIISVLSACASLGAFSQGMEI-HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422
Query: 195 LLEEAEAFIREMPIE 209
+ A + ++P+E
Sbjct: 423 SFKAARSIFDDIPLE 437
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 34/213 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W +I + ++G + A++V M + + TL +VL AC + + G H
Sbjct: 83 VWWNLLIREHIKQGRLDSAINVSCRMLRAG-TRLDHFTLPHVLKACGELPSYRCGSAFHG 141
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG 123
I + + NA++ MY +CG + A +F+ + + D+ISW++++S +
Sbjct: 142 LICCN-GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSS 200
Query: 124 CGRQALQLFSLMII------NGVFPDDVTFIALISACS-----------HGGLVDQGLIL 166
AL LFS M + D ++ + ++ AC HG + G L
Sbjct: 201 NAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL 260
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ ++D Y + GL+E A
Sbjct: 261 DVFVGNA------------LIDAYAKCGLMENA 281
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 185/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SW T+IGGY++ + EA+S+F + K P+E T+ VL AC+S+SA
Sbjct: 458 MRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDK 517
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R V N++++MY KCG + +A +F+ + KD++SW+ +I+G
Sbjct: 518 GREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYG 576
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+ LF+ M G+ PD+++F++L+ ACSH GLVD+G F M +I P
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDM R G L +A FI MPI + ++WGALL CRIH + ++ + + +++
Sbjct: 637 EHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFE 696
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + LM+N +A A++WE+ ++R I + GL+K GCSWIE+ +
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VVS+T+MI GYA G EAV +F+EME+ + P+ T+ VL+ C+ L
Sbjct: 357 MSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARNRLLDE 415
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I D+ V NA+++MY KCG + A VF+ + KD+ISW+TVI G +
Sbjct: 416 GKRVHEWIKEN-DMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYS 474
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVP 178
N +AL LF+L+++ F PD+ T ++ AC+ D+G I M Y
Sbjct: 475 KNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---F 531
Query: 179 QTQHYA-CVVDMYGRAGLL 196
+H A +VDMY + G L
Sbjct: 532 SDRHVANSLVDMYAKCGAL 550
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 15/215 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I GY G E+ +SVF +M + E + AT+V+V + C+ +S
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSG-IEIDLATIVSVFAGCADSRLISL 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + S + N +++MY KCGD+ A VF ++ + ++S++++I+G A
Sbjct: 315 GRAVHCF-GVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYA 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A++LF M G+ PD T A+++ C+ L+D+G V+E + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG-------KRVHEWIKEN 426
Query: 181 QH------YACVVDMYGRAGLLEEAEAFIREMPIE 209
++DMY + G + EAE EM ++
Sbjct: 427 DMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVK 461
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 100/198 (50%), Gaps = 3/198 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ A+ G ++ +F++M + E + T V + SS+ +++ G+ +H YI
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYI 221
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ N VGN+++ Y+K V A +VF+ + +D+ISW+++I+G NG +
Sbjct: 222 -LKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L +F M+ +G+ D T +++ + C+ L+ G + + + ++D
Sbjct: 281 LSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAV-HCFGVKACFSREDRFCNTLLD 339
Query: 189 MYGRAGLLEEAEAFIREM 206
MY + G L+ A+ REM
Sbjct: 340 MYSKCGDLDSAKVVFREM 357
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R V T + + E G + AV + K + +P TL +VL C+ +L G+
Sbjct: 59 RSVTDANTQLRRFCESGNLKNAVKLLHVSGKW-DIDPR--TLCSVLQLCADSKSLKDGKE 115
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V ++I + SNL G+ + MY CGD+ A +VF+ + + + W+ +++ LA +G
Sbjct: 116 VDNFIRGNGFVLDSNL-GSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSG 174
Query: 124 CGRQALQLFSLMIINGVFPDDVTF 147
++ LF M+ +GV D TF
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTF 198
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 187/290 (64%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
+ +R+VV+WT MIGG+A+ G +A+ +F EM + PN T+ +L AC+ ++A+
Sbjct: 329 LEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIR 388
Query: 60 FGQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+Y+ +YD S + V N +INMY KCGDV A VF+ ++ K ISW+++++
Sbjct: 389 IGKQIHAYVLRHHQYD-SSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMT 447
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +AL +F M G PDD+TF+ ++ ACSH G+VDQGL F +MS Y +
Sbjct: 448 GYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLT 507
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYA +D+ R G L++A +++MP+E VW ALL+ACR+H N E+ + +
Sbjct: 508 PRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNK 567
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
LV + G++ L+SN +A A RW+D +IR +++ G+KK+ GCSW++
Sbjct: 568 LVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQ 617
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 117/255 (45%), Gaps = 52/255 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-----EKTKEAEPNEATLVNVLSACSSISALS 59
DV+SW +++ + + A+ +F +M EK + ++VN+L AC S+ A+
Sbjct: 78 DVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVP 137
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------ 107
+ VH + R + VGNA+I+ Y KCG + A++VFNM+ +K
Sbjct: 138 QTKEVHGN-AIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 196
Query: 108 -----------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
DM++W+ VI+G + GC +AL +F MI +G P+
Sbjct: 197 SQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNC 256
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH----------YACVVDMYGRAG 194
VT I+++SAC+ G QG+ + A S ++ Y ++DMY +
Sbjct: 257 VTIISVLSACASLGAFSQGMEI-HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315
Query: 195 LLEEAEAFIREMPIE 209
+ A + ++P+E
Sbjct: 316 SFKAARSIFDDIPLE 330
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 87/218 (39%), Gaps = 38/218 (17%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
TL +VL AC + + G H I + + NA++ MY +CG + A +F+
Sbjct: 12 TLPHVLKACGELPSYRCGSAFHGLICCN-GFESNVFICNALVAMYSRCGSLEEASMIFDE 70
Query: 104 LAYK---DMISWSTVISGLAMNGCGRQALQLFSLMII------NGVFPDDVTFIALISAC 154
+ + D+ISW++++S + AL LFS M + D ++ + ++ AC
Sbjct: 71 ITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPAC 130
Query: 155 S-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
HG + G L + ++D Y + GL+E A
Sbjct: 131 GSLKAVPQTKEVHGNAIRNGTFLDVFVGNA------------LIDAYAKCGLMENAVKVF 178
Query: 204 REMPIEAEWSVWGALLNACRIHRN----DEMFDPIRQE 237
M + S W A++ N E+F +R+E
Sbjct: 179 NMMEFKDVVS-WNAMVAGYSQSGNFKAAFELFKNMRKE 215
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D +S+ ++ GY + G EEA VF++M+ +P+ AT+V+++ ACS ++AL G+
Sbjct: 370 KDTISYGALLSGYVQNGKAEEAFLVFKKMQAC-NVQPDIATMVSLIPACSHLAALQHGRC 428
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + R L++ + N++I+MY KCG + ++ QVF+ + +D++SW+T+I+G ++G
Sbjct: 429 SHGSVIIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHG 487
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G++A LF M G PDDVTFI LI+ACSH GLV +G F M+ Y I+P+ +HY
Sbjct: 488 LGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 547
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ R G L+EA FI+ MP++A+ VWGALL ACRIH+N ++ + + +
Sbjct: 548 ICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGP 607
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN F+ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 608 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSL 656
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 5/223 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+W M+ GYA G A++ +M+ PN +TLV++L + AL
Sbjct: 160 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQ 219
Query: 61 GQYVHSYISTRY-DLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G VH+Y Y D + L+G A+++MY KC + A +VF+ + ++ ++WS +I G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279
Query: 119 LAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
+ +A LF M++ G+ F + + + C+ + G L A+ I
Sbjct: 280 FVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQL-HALLAKSGIH 338
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
++ MY +AGL+ EA E+ I+ S +GALL+
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS-YGALLS 380
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ V+W+ +IGG+ EA ++F++M + ++ + L C+S++ L
Sbjct: 265 MTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRM 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ ++ + + GN++++MY K G + A +F+ +A KD IS+ ++SG
Sbjct: 325 GTQLHALLA-KSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYV 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG +A +F M V PD T ++LI ACSH G G ++ + ++
Sbjct: 384 QNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS 443
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
I ++DMY + G ++ + +MP S W ++ IH
Sbjct: 444 ICNS------LIDMYAKCGRIDLSRQVFDKMPARDIVS-WNTMIAGYGIH 486
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 114/243 (46%), Gaps = 7/243 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D ++ +I Y+ RG A+ +++ M + PN+ T VL ACS+++ L
Sbjct: 59 IPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFR-VPPNKYTFPFVLKACSALADLCA 117
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++ + L V A+I++Y++C G A VF + +D+++W+ +++G A
Sbjct: 118 GRTIHAHAAA-VGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYA 176
Query: 121 MNGCGRQAL-QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G A+ L + G+ P+ T ++L+ + G + QG + Y +
Sbjct: 177 NHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNE 236
Query: 180 TQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPIRQ 236
Q ++DMY + L A M + E + W AL+ + R E F+ +
Sbjct: 237 EQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVT-WSALIGGFVLCDRMTEAFNLFKD 295
Query: 237 ELV 239
LV
Sbjct: 296 MLV 298
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW TMI GY G +EA ++F M K + EP++ T + +++ACS ++
Sbjct: 468 MPARDIVSWNTMIAGYGIHGLGKEATTLFLSM-KNQGFEPDDVTFICLIAACSHSGLVTE 526
Query: 61 GQYVHSYISTRYDL 74
G++ ++ +Y +
Sbjct: 527 GKHWFDTMTHKYGI 540
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 193/295 (65%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ M+ Y+ +E +++F EM+ + EPNE+ LV VL+AC+ + AL+
Sbjct: 202 MPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQ-NEGTEPNESILVTVLTACAHLGALTQ 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VHSY + R+ L + ++ A+++MY KCG V A+ VF+ + KD +W+ +ISG A
Sbjct: 261 GLWVHSY-ARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEA 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++LQLF M + P++ TF+A+++AC+H +V QGL LF+ MS+VY +VP+
Sbjct: 320 LNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVVPRM 379
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
+HYACV+D+ RAG++EEAE F+ E + +VWGALLNACRIH+N + + + ++
Sbjct: 380 EHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRVWKK 439
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
LV+ GT L N + A +ANK+R I +G+KKK GCS IEV+ +
Sbjct: 440 LVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEV 494
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 23/220 (10%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
++G A+++ Y K G+V A +VF+ + ++ +SWS +++ + ++ L LF+ M
Sbjct: 177 VLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNE 236
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
G P++ + +++AC+H G + QGL + + + + + +VDMY + G +E
Sbjct: 237 GTEPNESILVTVLTACAHLGALTQGLWV-HSYARRFHLESNPILATALVDMYSKCGCVES 295
Query: 199 AEAFIREMPIEAEWSVWGALLN-------------------ACRIHRNDEMFDPIRQELV 239
A + + + ++ + W A+++ A R N+ F +
Sbjct: 296 ALS-VFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACT 354
Query: 240 NKKGVSVG--TFALMSNTFAGADRWEDANKIRDEIRRMGL 277
+ K V G F MS+ + R E + D + R G+
Sbjct: 355 HAKMVQQGLWLFEEMSSVYGVVPRMEHYACVIDLLSRAGM 394
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 189/289 (65%), Gaps = 6/289 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +MI GY + G +A+ +F+EM +++++P+E T+V+V SAC + L
Sbjct: 363 MPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGL 422
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S + + + +S V N++I+MY +CG + A+ +F +A +D++S++T+ISG A
Sbjct: 423 GNWAVSILKENH-IQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFA 481
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G ++++L M +G+ PD +T+IA+++ACSH GL+ +G LF+++ P
Sbjct: 482 EHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIK-----FPDV 536
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC++DM GRAG LEEA I+ MP+E ++G+LLNA IH+ E+ + +L
Sbjct: 537 DHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFK 596
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RW+D +K+RD +R+ G+KK TG SW+E N
Sbjct: 597 VEPHNSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGLSWLEHN 645
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 40/243 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M+ GYA+ G EE + +F +M +P+E T V V+S+CSS+
Sbjct: 226 MPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCL 285
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---------------- 104
+ + + + V A+++M+ KCG++ A ++F L
Sbjct: 286 SESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMIS 345
Query: 105 AY------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN-GVFPDDV 145
AY +D +SW+++I+G NG +A++LF MI + PD+V
Sbjct: 346 AYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEV 405
Query: 146 TFIALISACSHGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFI 203
T +++ SAC H G + G A+S + E I Y ++ MY R G +++A
Sbjct: 406 TMVSVFSACGHLGELGLGNW---AVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIF 462
Query: 204 REM 206
+EM
Sbjct: 463 QEM 465
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 40/224 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R V W MI GY + G EEA ++F M
Sbjct: 160 MPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQ------------------------- 194
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++S + + +I + K G++ A F+ + + ++SW+ ++SG A
Sbjct: 195 ------------EISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYA 242
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G + ++LF+ M+ G V PD+ T++ +IS+CS G + + + P
Sbjct: 243 QGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPN 302
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNA 221
++DM+ + G LE A ++ + S W A+++A
Sbjct: 303 YFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISA 346
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 111/249 (44%), Gaps = 22/249 (8%)
Query: 5 DVVSWTTMIGGYAERGF-CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
DV +T M+ Y++ G + VS+F+ M + +PN + ++ + S S L +
Sbjct: 66 DVRVFTFMLKYYSQIGVRAQVPVSLFKHMLRHCNIKPNTSFYSVMMKSAGSESML----F 121
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ + + YD + V N ++ +Y K G + A ++F+ + + + W+ +ISG G
Sbjct: 122 LAHVLKSGYDRD--HYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCG 179
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A LF +M + + +T+ +I+ + G + + F M + +
Sbjct: 180 NEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVS-----W 234
Query: 184 ACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDP-IRQEL 238
++ Y + G EE +M ++ + + W ++++C + DP + + +
Sbjct: 235 NAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSC-----SSLGDPCLSESI 289
Query: 239 VNKKGVSVG 247
V K +VG
Sbjct: 290 VRKLDDTVG 298
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 190/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++VV+W MIG + EA+ +F+EM+ + +P++ T+++ LSACS + AL
Sbjct: 347 MPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSN-MKPDKVTMLHCLSACSQLGALDT 405
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + H+YI +++LS+ +G A+I+MY KCG++ A+QVFN + ++ ++W+ +I GLA
Sbjct: 406 GMWTHNYIK-KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLA 464
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G A+ FS MI +G+ PD++TF+ +++AC HGGLV++G F M + + + PQ
Sbjct: 465 LYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQP 524
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+V++ GRAGLLEEAE I+ MP+EA+ VWGAL AC IHRN + + +L++
Sbjct: 525 KHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLD 584
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++N + A +WE+A IR + G++K G S IEVN
Sbjct: 585 LDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVN 633
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 130/256 (50%), Gaps = 37/256 (14%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW ++I GY R EA+ ++Q+M T+ +P+E T++ V+SAC+ + +L G+
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQM-ITEHVKPDEVTMIGVVSACAQLESLKLGRE 276
Query: 64 VHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI + +L +S + NA+++MYVKCGD+ +F+ + K ++SW+T+I G A N
Sbjct: 277 IHRYIEESGLNLKIS--LVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKN 334
Query: 123 G----CGR---------------------------QALQLFSLMIINGVFPDDVTFIALI 151
G G+ +AL+LF M + + PD VT + +
Sbjct: 335 GLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCL 394
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
SACS G +D G+ + + + ++DMY + G + +A EMP
Sbjct: 395 SACSQLGALDTGMWTHNYIKK-HNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNS 453
Query: 212 WSVWGALLNACRIHRN 227
+ W A++ ++ N
Sbjct: 454 LT-WTAIIGGLALYGN 468
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 111/249 (44%), Gaps = 34/249 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-QY 63
+V SW +I G E ++ + +++ M P+ T + C+++ G +
Sbjct: 117 NVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEI 176
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ + +D + + N +I+M V G+ G+A +VF+ +D++SW+++I+G
Sbjct: 177 LGQVLKMGFDKDM--YLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRR 234
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL----ILFK 168
R+A+ ++ MI V PD+VT I ++SAC+ H + + GL L
Sbjct: 235 QPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVN 294
Query: 169 AMSTVY---------EIVPQTQHYACVVDM------YGRAGLLEEAEAFIREMPIEAEWS 213
A+ +Y +++ VV Y + GLL+ A +MP E
Sbjct: 295 ALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMP-EKNVV 353
Query: 214 VWGALLNAC 222
W A++ +C
Sbjct: 354 AWNAMIGSC 362
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 191/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++V+W+TMI GYA E+AV F+ ++ + NE +V V+S+C+ + AL+
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEALQ-AEGVVANETVMVGVISSCAHLGALAM 267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ R LS++ ++G AV++MY +CG+V A+ VF L KD++ W+ +I+GLA
Sbjct: 268 GEKAHEYV-MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLA 326
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL FS M G P D+TF A+++ACSH G+V++GL +F++M + + P+
Sbjct: 327 MHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRL 386
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L +AE F+ +MP++ +W ALL ACRIH+N E+ + + + L+
Sbjct: 387 EHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLE 446
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A++W+D +R ++ G++K G S IE++ +
Sbjct: 447 MQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKV 498
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 14/144 (9%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y +CGD A ++F+ + +++++WST+ISG A N C +A++ F + GV ++
Sbjct: 193 YHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVM 252
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEA 201
+ +IS+C+H G + G +E V + + VVDMY R G +E+A
Sbjct: 253 VGVISSCAHLGALAMG-------EKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVM 305
Query: 202 FIREMPIEAEWSVWGALLNACRIH 225
++P E + W AL+ +H
Sbjct: 306 VFEQLP-EKDVLCWTALIAGLAMH 328
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 186/293 (63%), Gaps = 4/293 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ V +W MI GYA+ G E A+S+FQEM T E PN T+ ++LSAC+ + ALSFG+
Sbjct: 368 EKTVAAWNAMISGYAQSGLTEMAISLFQEM-MTTEFTPNPVTITSILSACAQLGALSFGK 426
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH I ++ +L + V A+I+MY KCG++ A Q+F++ + K+ ++W+T+I G ++
Sbjct: 427 SVHQLIKSK-NLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLH 485
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL+LF+ M+ G P VTF++++ ACSH GLV +G +F AM Y I P +H
Sbjct: 486 GYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEH 545
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GRAG LE+A FIR+MP+E +VWG LL AC IH++ + + L
Sbjct: 546 YACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELD 605
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN--PSIF 293
+VG + L+SN ++ + A +R+ +++ L K GC+ IEVN P +F
Sbjct: 606 PGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVF 658
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 110/253 (43%), Gaps = 26/253 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD V W TMI G +++V VF++M + + T+ VL A + + +
Sbjct: 164 MPDRDTVLWNTMITGLVRNCCYDDSVQVFKDM-VAQGVRLDSTTVATVLPAVAEMQEVKV 222
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++ + + V +I+++ KC DV A +F M+ D++S++ +ISG +
Sbjct: 223 GMGIQC-LALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFS 281
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALI-----------SACSHGGLVDQGLILFKA 169
NG A++ F ++++G T + LI + C G V G IL +
Sbjct: 282 CNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPS 341
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ST + +Y R ++ A E E + W A+++ E
Sbjct: 342 VSTA------------LTTIYSRLNEIDLARQLFDESS-EKTVAAWNAMISGYAQSGLTE 388
Query: 230 MFDPIRQELVNKK 242
M + QE++ +
Sbjct: 389 MAISLFQEMMTTE 401
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 10/226 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+VS+ +I G++ G E AV F+E+ + + + +T+V ++ S L
Sbjct: 267 KPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ-RVSSSTMVGLIPVSSPFGHLHLAC 325
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ + + + V A+ +Y + ++ +A Q+F+ + K + +W+ +ISG A +
Sbjct: 326 CIQGF-CVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQS 384
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI---LFKAMSTVYEIVPQ 179
G A+ LF M+ P+ VT +++SAC+ G + G L K+ + I
Sbjct: 385 GLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVS 444
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + EA ++ E W ++ +H
Sbjct: 445 T----ALIDMYAKCGNISEASQLF-DLTSEKNTVTWNTMIFGYGLH 485
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEA--VSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+PK D+ + +I G++ F +A +S + + K P+ T +SA S L
Sbjct: 66 VPKPDIFLFNVLIKGFS---FSPDASSISFYTHLLKNTTLSPDNFTYAFAISA-SPDDNL 121
Query: 59 SFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ H+ + D SNL V +A++++Y K V A +VF+ + +D + W+T+I+
Sbjct: 122 GMCLHAHAVV----DGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMIT 177
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
GL N C ++Q+F M+ GV D T ++ A + V G+
Sbjct: 178 GLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGM 224
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VV+WT +I GYAE+G +EA + +M + + + A ++++L+AC+ LS
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-LKFDAAAVISILAACTESGLLSL 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS I R +L + V NA+++MY KCG++ A VFN + KD++SW+T++ GL
Sbjct: 334 GMRIHS-ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A++LFS M G+ PD VTFIA++ +C+H GL+D+G+ F +M VY++VPQ
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQV 452
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G L+EA ++ MP+E +WGALL ACR+H ++ + LV
Sbjct: 453 EHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVK 512
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G ++L+SN +A A+ WE IR +++ MG++K +G S +E+ I
Sbjct: 513 LDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 124/251 (49%), Gaps = 18/251 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW +M+GG + G +A +F EM + N T+++ + C +S +F
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWN--TMLDGYARCREMSK-AF 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--LAYKDMISWSTVISG 118
+ + R +S S +V Y K GD+ +A +F+ L K++++W+ +I+G
Sbjct: 237 ELF--EKMPERNTVSWSTMVMG-----YSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G ++A +L M+ +G+ D I++++AC+ GL+ G+ + + +
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKR-SNLGS 348
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
++DMY + G L++A ++P + + W +L+ +H + E+F +
Sbjct: 349 NAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRM 407
Query: 235 RQELVNKKGVS 245
R+E + V+
Sbjct: 408 RREGIRPDKVT 418
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 32/205 (15%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C++++ + + +H+ I R +L + +I+ C +A++VFN + +
Sbjct: 26 LPKCANLNQV---KQLHAQI-IRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPN 81
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HG 157
+ +++I A N QA +FS M G+F D+ T+ L+ ACS H
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL--EEAEAFIREMPIE--AEW- 212
+ GL S +Y VP ++D Y R G L +A +M W
Sbjct: 142 HIEKLGL-----SSDIY--VPNA-----LIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 213 SVWGALLNACRIHRNDEMFDPIRQE 237
S+ G L+ A + +FD + Q
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQR 214
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 191/289 (66%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW MIGGY +EA+++F+EM + EP E T +++L +C+ + A+
Sbjct: 322 MLERDVISWNVMIGGYTHMCSYKEALALFREMLASG-VEPTEITFLSILPSCAHLGAIDL 380
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI+ ++ ++L ++I++Y KCG++ A QVF+ + K + SW+ +I GLA
Sbjct: 381 GKWIHAYINKNFNSVSTSLS-TSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLA 439
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +A +LFS M +G+ P+++TF+ ++SAC H GLVD G F +M Y+I P++
Sbjct: 440 MHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKS 499
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C++D+ GRAGL EEAE+ ++ M ++ + ++WG+LL ACR H E+ + + + L
Sbjct: 500 QHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFE 559
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +AGA +W+D +IR + G+KK GC+ IEV+
Sbjct: 560 LEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVD 608
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 138/233 (59%), Gaps = 5/233 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSW MI GYA+ G +EA+ +F++M K PNE+T+V+VLSAC+ +AL
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKAN-VPPNESTIVSVLSACAQSNALDL 279
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S+I R S LV NA+I+MY KCGD+ A ++F+ + +D+ISW+ +I G
Sbjct: 280 GNSMRSWIEDRGLCSNLKLV-NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYT 338
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +GV P ++TF++++ +C+H G +D G + ++ + V T
Sbjct: 339 HMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSV-ST 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++D+Y + G + A M I++ S W A++ +H + D+ F+
Sbjct: 398 SLSTSLIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKAFE 449
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 110/245 (44%), Gaps = 41/245 (16%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +MI G + A+ F M + EPN T +L +C+ +++ G+ +H+++
Sbjct: 97 WNSMIRGLSMSLSPALALVFFVRMIYSG-VEPNSYTFPFLLKSCAKLASAHEGKQIHAHV 155
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIAI------- 98
+ + ++INMY + G++ G A+
Sbjct: 156 -LKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRA 214
Query: 99 -QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
Q+F+ + KD++SW+ +I+G A G ++AL LF M V P++ T ++++SAC+
Sbjct: 215 RQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQS 274
Query: 158 GLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+D G +M + E + + ++DMY + G L+ A +M +E +
Sbjct: 275 NALDLG----NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVIS 329
Query: 215 WGALL 219
W ++
Sbjct: 330 WNVMI 334
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 18/235 (7%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
E + +LS C SI +F Q I T ++ L + + GD+ AI +F
Sbjct: 29 EHPSLKLLSKCQSIR--TFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLF 86
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
N + ++ W+++I GL+M+ AL F MI +GV P+ TF L+ +C+
Sbjct: 87 NSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAH 146
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE---------MPIEAEW 212
+G + A V + +++MY ++G + A+ + + A +
Sbjct: 147 EGKQI-HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGY 205
Query: 213 SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267
++WG + R ++FD + + V + +A M + +ED K
Sbjct: 206 ALWGYM------DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 186/287 (64%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E+ PNE T++++L AC+ + A+ G++
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNEVTMLSILPACAHLGAIDIGRW 357
Query: 64 VHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI R +S + + ++I+MY KCGD+ A QVF+ + + + SW+ +I G AM+
Sbjct: 358 IHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH 417
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A +FS M +G+ PDD+TF+ L+SACSH G++D G +F++M+ Y+I P+ +H
Sbjct: 418 GRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEH 477
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EAE I M ++ + +W +LL AC++H N E+ + Q L+ +
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIE 537
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G++ L+SN +A A RW + K R + G+KK GCS IE++
Sbjct: 538 PKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEID 584
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 138/234 (58%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW +I GYAE G +EA+ +F+EM KT +P+E+T+V VLSAC+ +++
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN-VKPDESTMVTVLSACAQSASIEL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I S +V NA+I++Y+KCG+V A +F L+YKD+ISW+T+I G
Sbjct: 254 GRQVHSWIDDHGFGSNLKIV-NALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P++VT ++++ AC+H G +D G + + + V
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNP 372
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A+ M + S W A++ +H R + FD
Sbjct: 373 SSLRTSLIDMYAKCGDIEAAQQVFDSM-LNRSLSSWNAMIFGFAMHGRANPAFD 425
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M PN T +L AC+ A GQ +
Sbjct: 67 NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLV-PNSYTFPFLLKACAKSKAFREGQQI 125
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY------------------ 106
H ++ + + V ++I MYVK G A +VF+ ++
Sbjct: 126 HGHV-LKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGY 184
Query: 107 -------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
KD++SW+ +ISG A G ++AL+LF M+ V PD+ T + ++SA
Sbjct: 185 IXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSA 244
Query: 154 CSHGGLVDQG 163
C+ ++ G
Sbjct: 245 CAQSASIELG 254
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + SW MI G+A G A +F M K EP++ T V +LSACS L
Sbjct: 399 MLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDG-IEPDDITFVGLLSACSHSGMLDL 457
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGL 119
G+++ ++ Y ++ +I++ G A ++ N M D + W +++
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKAC 517
Query: 120 AMNG 123
M+G
Sbjct: 518 KMHG 521
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
AI VF+ + +++ W+T+ G A++ AL L+ MI G+ P+ TF L+ AC+
Sbjct: 56 AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAK 115
Query: 156 ----------HGGLVDQG----LILFKAMSTVY----------EIVPQTQH-----YACV 186
HG ++ G L + ++ +Y ++ Q+ H Y +
Sbjct: 116 SKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTAL 175
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ Y G + A+ E+P++ S W AL++
Sbjct: 176 IKGYASNGYIXSAQKMFDEIPVKDVVS-WNALISG 209
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 183/277 (66%), Gaps = 1/277 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++SW MIGGY+ +EA+++F++M+++ EPN+ T V++L AC+ + AL G+
Sbjct: 327 EKDIISWNVMIGGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPACAYLGALDLGK 385
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H+YI ++ + + ++I+MY KCG++ A QVF + K + SW+ +ISGLAM+
Sbjct: 386 WIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMH 445
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G AL+LF M G PDD+TF+ ++SACSH GLV+ G F +M Y+I P+ QH
Sbjct: 446 GHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQH 505
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAGL +EAEA ++ M ++ + ++WG+LL ACR+H N E+ + + L +
Sbjct: 506 YGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELE 565
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279
+ G + L+SN +A A RW+D +IR ++ G+KK
Sbjct: 566 PENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 139/241 (57%), Gaps = 7/241 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD VSW MI GYA+ G EEA++ FQEM++ A PNE+T+V VLSAC+ +L
Sbjct: 224 IPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA-PNESTMVTVLSACAQSGSLEL 282
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +V S+I S LV NA+I+MY KCGD+ A +F + KD+ISW+ +I G +
Sbjct: 283 GNWVRSWIEDHGLGSNLRLV-NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M + V P+DVTF++++ AC++ G +D G + + + + T
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+ ++DMY + G +E A+ M ++ S W A+++ +H + E+F +R
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMALELFRQMRD 460
Query: 237 E 237
E
Sbjct: 461 E 461
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 34/223 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TMI G + A+ + M EPN T +L +C+ + A G+ +H ++
Sbjct: 100 WNTMIRGNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCAKVGATQEGKQIHGHV 158
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM------------------------- 103
+ L V ++INMY + G++G A VF+
Sbjct: 159 -LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDA 217
Query: 104 ------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+ +D +SW+ +I+G A +G +AL F M V P++ T + ++SAC+
Sbjct: 218 RRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQS 277
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
G ++ G + ++ + + + ++DMY + G L++A
Sbjct: 278 GSLELGNWV-RSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK++VV+W +I GY++ G EA+++F EM+ + +P+ +V+VL AC+ AL
Sbjct: 383 MPKKNVVAWNAIISGYSQHGHPHEALALFIEMQ-AQGIKPDSFAIVSVLPACAHFLALEQ 441
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R + +VG ++++Y KCG+V A ++F + +D++SW+T+I
Sbjct: 442 GKQIHGY-TIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYG 500
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G AL LFS M G D + F A+++ACSH GLVDQGL F+ M + Y + P+
Sbjct: 501 IHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKL 560
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG L+EA I+ M +E + +VWGALL ACRIH N E+ + + L
Sbjct: 561 EHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFE 620
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A RWED K+R ++ G+KK+ GCS + V+ +
Sbjct: 621 LDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDV 672
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 131/232 (56%), Gaps = 10/232 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV SW +IGGY+ EA++ F M+ + +PN T+V+VL AC+ + AL
Sbjct: 282 MPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ-VRGIKPNSITMVSVLPACAHLFALEQ 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H Y + R +++VGNA++NMY KCG+V A ++F + K++++W+ +ISG +
Sbjct: 341 GQQIHGY-AIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYS 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYE--IV 177
+G +AL LF M G+ PD ++++ AC+H ++QG I + + +E +V
Sbjct: 400 QHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVV 459
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
T +VD+Y + G + A+ MP E + W ++ A IH + E
Sbjct: 460 VGTG----LVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGE 506
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 141/254 (55%), Gaps = 7/254 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSW +I GY++ G EA+++F EM+ +PN +TLV+V+ C+ + AL
Sbjct: 181 MPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ-VNGIKPNSSTLVSVMPVCAHLLALEQ 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R + LV N ++NMY KCG+V A ++F + +D+ SW+ +I G +
Sbjct: 240 GKQIHCY-AIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYS 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
+N +AL F+ M + G+ P+ +T ++++ AC+H ++QG I A+ + +E
Sbjct: 299 LNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV 358
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ +V+MY + G + A MP + W A+++ H + + E+
Sbjct: 359 VGN--ALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQHGHPHEALALFIEM- 414
Query: 240 NKKGVSVGTFALMS 253
+G+ +FA++S
Sbjct: 415 QAQGIKPDSFAIVS 428
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 12/221 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ + V W I GY + GF +A+ ++ +M++T P++ ++V+ AC S S L G+
Sbjct: 82 RNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGR 140
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH I R +VG A+ +MY KCG + A QVF+ + +D++SW+ +I+G + N
Sbjct: 141 KVHEDIIAR-GFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQN 199
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL LFS M +NG+ P+ T ++++ C+H ++QG + Y I +
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIH-----CYAIRSGIES 254
Query: 183 YACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
V V+MY + G + A MPI + + W A++
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAII 294
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 183/293 (62%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D +SW ++I G + G +E + FQ+M K +PN + +++ AC+ ++ L
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAK-IKPNHVSFSSIMPACAHLTTLHL 315
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI +R+D +V + +A+++MY KCG++ A +F+ + DM+SW+ +I G
Sbjct: 316 GKQLHGYIIRSRFDGNV--FIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGY 373
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G A+ LF M + GV P+ V F+A+++ACSH GLVD+ F +M+ Y I+P
Sbjct: 374 ALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPG 433
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYA V D+ GR G LEEA FI +M IE SVW LL ACR+H+N E+ + + ++L
Sbjct: 434 LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLF 493
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++G + L+SN ++ A RW+DA K+R +R G+KKK CSWIE+ +
Sbjct: 494 TVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKV 546
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 16/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+VSW T+I G A+ G E+A+ + +EM + P+ TL +VL + L
Sbjct: 156 MPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNA-DLRPDSFTLSSVLPIFAEYVNLLK 214
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y I YD V +G+++I+MY KC V + +VF ML D ISW+++I+G
Sbjct: 215 GKEIHGYAIRNGYDADV--FIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGC 272
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVY 174
NG + L+ F M+I + P+ V+F +++ AC+ H G G I+
Sbjct: 273 VQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNV 332
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
I + +VDMY + G + A +M + S W A++ +H
Sbjct: 333 FIA------SALVDMYAKCGNIRTARWIFDKMELYDMVS-WTAMIMGYALH 376
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+G +VF M+ +D++SW+TVISG A NG AL + M + PD T +++
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 203
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 183/286 (63%), Gaps = 3/286 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+D +SW T+IGGY+ EA ++F EM + PN T+ +L A +S+S+L G+
Sbjct: 249 KKDTISWNTLIGGYSRSNLANEAFTLFNEM--LLQLRPNAVTMACILPAAASLSSLERGR 306
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+Y R L N V NA+++MYVKCG + +A ++F+ML K++ISW+ +I+G M+
Sbjct: 307 EMHAYAVRRGYLE-DNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMH 365
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G GR A+ LF M +G+ PD +F A++ ACSH GL D+G F AM + I P+ +H
Sbjct: 366 GRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKH 425
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ G L+EA FI MPIE + S+W +LL CRIHRN ++ + + + + +
Sbjct: 426 YACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELE 485
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L++N +A A+RWE K+++++ GL++ TGCSWIEV
Sbjct: 486 PENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEV 531
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SW ++IGG A G ++AV +F M + E + TL++V+ AC
Sbjct: 45 MPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQ-ELDSTTLLSVMPACVQSHYSFI 103
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH Y S R L +GNA+++MY C D ++F + K+++SW+ +I+
Sbjct: 104 GGVVHGY-SVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYT 162
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 178
G + LF M + G+ PD + + A + + G + + + + E++P
Sbjct: 163 RAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLP 222
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+++MY + G +EEA FI + + + W L+
Sbjct: 223 VAN---ALMEMYVKCGYMEEAR-FIFDHVTKKDTISWNTLI 259
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 100/196 (51%), Gaps = 4/196 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VVSWT MI Y G ++ +FQEM + P+ + + L A + +L
Sbjct: 146 MEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM-GLEGIRPDVFAITSALDAFAGNESLKH 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y + R + V NA++ MYVKCG + A +F+ + KD ISW+T+I G +
Sbjct: 205 GKSVHGY-AIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYS 263
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ +A LF+ M++ + P+ VT ++ A + +++G + A + +
Sbjct: 264 RSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREM-HAYAVRRGYLEDN 321
Query: 181 QHYACVVDMYGRAGLL 196
+VDMY + G L
Sbjct: 322 FVANALVDMYVKCGAL 337
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 18/227 (7%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH Y+ +Y V NA+I+ Y K + A+ VF+ + +D+ISW+++I G A
Sbjct: 3 GLVVHGYL-VKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCA 61
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC--SH----GGLVDQGLILFKAMSTVY 174
NG +A++LF M + G D T ++++ AC SH GG+V S
Sbjct: 62 SNGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVV-------HGYSVRT 114
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
++ +T ++DMY R M + S W A++ + + + +
Sbjct: 115 GLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVS-WTAMITSYTRAGHFDKVAGL 173
Query: 235 RQELVNKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRRMGLKK 279
QE+ +G+ FA+ S + FAG + + + R G+++
Sbjct: 174 FQEM-GLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEE 219
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
+ ++++SWT MI GY G +A+++F++M K +P+ + +L ACS
Sbjct: 347 LTNKNLISWTIMIAGYGMHGRGRDAIALFEQM-KGSGIQPDAGSFSAILYACS 398
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++ +W+ MI GYA+ E+A+ +F E+ K + NE +V+V+S+C+ + AL F
Sbjct: 211 MPHRNLFTWSIMINGYAKNNCFEKAIDLF-ELMKREGVVANETVMVSVISSCAHLGALEF 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ + ++V+ ++G A+++MY +CG++ AI+VF L KD +SWS++I GLA
Sbjct: 270 GERAHEYV-VKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLA 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +A+ FS M+ G P D+T A++SACSHGGLVD+GL +++ M Y I P+
Sbjct: 329 VHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRL 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM GRAG L EAE FI +MP++ + GALL AC+I++N E+ + + L+
Sbjct: 389 EHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIE 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + L+SN +A A +WE +RD ++ +KK G S IE++ I
Sbjct: 449 VKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKI 500
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 43/237 (18%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
+A + +M K++ P+ T ++ A + + + G+ HS I R+ V N+
Sbjct: 102 KAFGFYTQMLKSR-IWPDNITFPFLIKASTEMECVVVGEQTHSQI-VRFGFQNDVYVENS 159
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISW------------------------------- 112
+++MY CG + A ++F + ++D++SW
Sbjct: 160 LVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTW 219
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFK 168
S +I+G A N C +A+ LF LM GV ++ +++IS+C+H G ++ G + K
Sbjct: 220 SIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVK 279
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ TV I+ +VDMY R G +E+A E+P + S W +++ +H
Sbjct: 280 SHMTVNLILG-----TALVDMYWRCGEIEKAIRVFEELPDKDSLS-WSSIIKGLAVH 330
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD---------VGIAI 98
+L +CSS S L + +H ++ R L V + ++ + + D +G A
Sbjct: 18 LLQSCSSFSDL---KIIHGFL-LRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAY 73
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+F+ + ++ ++ +I + +A ++ M+ + ++PD++TF LI A +
Sbjct: 74 GIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEME 133
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
V G + S + Q Y +V MY GL+ A +MP S
Sbjct: 134 CVVVGE---QTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTS 190
Query: 217 ALLNACR---IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273
+ C+ + EMFD + ++ T+++M N +A + +E A + + ++
Sbjct: 191 MVAGYCKCGMVEDAREMFDEMPHR-------NLFTWSIMINGYAKNNCFEKAIDLFELMK 243
Query: 274 RMGL 277
R G+
Sbjct: 244 REGV 247
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW MI GYA G +EA+ +F +M++ + +P+ T+V VLSAC+ + AL
Sbjct: 274 MPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQR-ENVKPDCYTVVGVLSACARLGALEL 332
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + R + + ++G A+I++Y KCG + A +VF + KD + W+ +ISGLA
Sbjct: 333 GEWVSGLVD-RNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLA 391
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG + + LF + G+ PD TFI L+ C+H GLVD+G F +M + + P
Sbjct: 392 MNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSI 451
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EA IR MP+EA VWGALL ACRIHR+ ++ + ++L+
Sbjct: 452 EHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIE 511
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN ++ +W++A K+R + ++K GCSWIEV+
Sbjct: 512 LEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVD 560
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VVSWT +I GY G EA+ +F+ + + A P+ T+V VLSAC+ + L+
Sbjct: 173 IPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLA-PDSFTIVRVLSACTQLGDLNS 231
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H I + + VG ++++MY KCG++ A VF+ + KD++SW +I G A
Sbjct: 232 GEWIHKCI-MEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA 290
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++A+ LF M V PD T + ++SAC+ G ++ G + + E +
Sbjct: 291 LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWV-SGLVDRNEFLYNP 349
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D+Y + G + A + M E + VW A+++
Sbjct: 350 VLGTALIDLYAKCGSMSRAWEVFKGMK-EKDRVVWNAIISG 389
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W TMI G ++A+ + M +++ PN T VL AC+ + L G +
Sbjct: 76 NIFLWNTMIRGLVSNDCFDDAIEFYGLM-RSEGFLPNNFTFPFVLKACARLLDLQLGVKI 134
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ + +D V V +++ +Y KCG + A +VF+ + K+++SW+ +ISG G
Sbjct: 135 HTLVVKGGFDCDV--FVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVG 192
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA---MSTVYEIVPQT 180
R+A+ +F ++ + PD T + ++SAC+ G ++ G + K M V + T
Sbjct: 193 KFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGT 252
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + G +E+A + MP E + WGA++
Sbjct: 253 S----LVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQG 288
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 19/137 (13%)
Query: 82 NAVINMYVKCG----DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
N ++NM ++C D +F+ + ++ W+T+I GL N C A++ + LM
Sbjct: 46 NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105
Query: 138 NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC-------VVDMY 190
G P++ TF ++ AC+ L+ + ++ +V + + C +V +Y
Sbjct: 106 EGFLPNNFTFPFVLKACAR-------LLDLQLGVKIHTLVVKGG-FDCDVFVKTSLVCLY 157
Query: 191 GRAGLLEEAEAFIREMP 207
+ G LE+A ++P
Sbjct: 158 AKCGYLEDAHKVFDDIP 174
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 185/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SW T+IGGY++ + EA+S+F + + K P+E T+ VL AC+S+SA
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R V N++++MY KCG + +A +F+ +A KD++SW+ +I+G
Sbjct: 518 GREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+ LF+ M G+ D+++F++L+ ACSH GLVD+G F M +I P
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDM R G L +A FI MPI + ++WGALL CRIH + ++ + + +++
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + LM+N +A A++WE ++R I + GL+K GCSWIE+ +
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 8/199 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VVS+T+MI GYA G EAV +F+EME+ + P+ T+ VL+ C+ L
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDE 415
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I DL V NA+++MY KCG + A VF+ + KD+ISW+T+I G +
Sbjct: 416 GKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVP 178
N +AL LF+L++ F PD+ T ++ AC+ D+G I M Y
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---F 531
Query: 179 QTQHYA-CVVDMYGRAGLL 196
+H A +VDMY + G L
Sbjct: 532 SDRHVANSLVDMYAKCGAL 550
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 15/215 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I GY G E+ +SVF +M E + AT+V+V + C+ +S
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCADSRLISL 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS I + S + N +++MY KCGD+ A VF ++ + ++S++++I+G A
Sbjct: 315 GRAVHS-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A++LF M G+ PD T A+++ C+ L+D+G V+E + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-------KRVHEWIKEN 426
Query: 181 QH------YACVVDMYGRAGLLEEAEAFIREMPIE 209
++DMY + G ++EAE EM ++
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 103/198 (52%), Gaps = 3/198 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ A+ G ++ +F++M + E + T V + SS+ ++ G+ +H +I
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 221
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ N VGN+++ Y+K V A +VF+ + +D+ISW+++I+G NG +
Sbjct: 222 -LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L +F M+++G+ D T +++ + C+ L+ G + ++ + + ++D
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLD 339
Query: 189 MYGRAGLLEEAEAFIREM 206
MY + G L+ A+A REM
Sbjct: 340 MYSKCGDLDSAKAVFREM 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R V T + + E G E AV + K + +P TL +VL C+ +L G+
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVSGKW-DIDPR--TLCSVLQLCADSKSLKDGKE 115
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V ++I + SNL G+ + MY CGD+ A +VF+ + + + W+ +++ LA +G
Sbjct: 116 VDNFIRGNGFVIDSNL-GSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLIL 166
++ LF M+ +GV D TF + + S HGG G IL
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV W ++ GY + +EA+++F EM+++K +PNE T+VN+LSACS + AL
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESK-VDPNEITMVNLLSACSQLGALEM 374
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI R+ L +S +G ++++MY KCG++ AI +F + K+ ++W+ +I GLA
Sbjct: 375 GMWVHHYID-RHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLA 433
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A++ F MI G+ PD++TFI ++SAC H GLV +G F M Y + +
Sbjct: 434 NHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKM 493
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C++D+ GRAG L+EAE + MP++ + VWGAL ACR+H N + + +LV
Sbjct: 494 KHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVE 553
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++N +A A+ + A+K+R +R +G++K GCS IE+N
Sbjct: 554 LDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 602
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 126/256 (49%), Gaps = 47/256 (18%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSF 60
P RDVVSW T+IGGY G EA+ +F + E K P+E T++ +S C+ + L
Sbjct: 183 PARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLEL 242
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ ++ L+ NAV++MYVKCG + +A VF + K ++SW+T+I G A
Sbjct: 243 GKRLHEFVDSKGVRCTVRLM-NAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHA 301
Query: 121 -------------------------------MNGCGRQALQLFSLMIINGVFPDDVTFIA 149
N G++A+ LF M + V P+++T +
Sbjct: 302 RLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVN 361
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGLLEEAEAFI 203
L+SACS G ++ G+ V+ + + Q Y V VDMY + G +++A
Sbjct: 362 LLSACSQLGALEMGM-------WVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIF 414
Query: 204 REMPIEAEWSVWGALL 219
+E+P + W A++
Sbjct: 415 KEIP-DKNALTWTAMI 429
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
+ +++ + + A P+ T +L AC+ + +G V ++ + S V N
Sbjct: 102 RHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQ-KLGFSADVFVVN 160
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--V 140
A ++ + G + +A ++F+ +D++SW+T+I G +G R+AL+LF ++ +G V
Sbjct: 161 AGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAV 220
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
PD+VT I +S C+ G ++ G L + + + + + V+DMY + G LE A+
Sbjct: 221 RPDEVTMIGAVSGCAQMGDLELGKRLHEFVDS-KGVRCTVRLMNAVMDMYVKCGSLELAK 279
Query: 201 A 201
+
Sbjct: 280 S 280
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VV+W MI G A +G EA+ F+ M+ K +P+E TLV VL++C+++ L
Sbjct: 274 MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQD-KGVKPDEVTLVGVLNSCANLGVLEI 332
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ + L+ VGNA+++MY KCG + A +VF + +D+ S++ +I GLA
Sbjct: 333 GKWVHAYMRRNHILA-DKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLA 391
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A Q+FS M G+ P++VTF+ L+ ACSHGGLV +G F MS Y++ PQ
Sbjct: 392 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQA 451
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAGL++EAE I +M I + GALL ACRIH N ++ + + Q+L
Sbjct: 452 EHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTE 511
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
GT+ LM+N ++ RW+DA KIR ++ ++K GCS IEV+
Sbjct: 512 LDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVD 560
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 121/198 (61%), Gaps = 2/198 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD+VSWTT+I + + G AV F EM + + TLV VLSACS++ L+ G
Sbjct: 173 PHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLR-LRADGRTLVVVLSACSNLGDLNLG 231
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
Q VHSYI D+ VGNA+++MY+KC D+ A +VF+ + K++++W+ +ISGLA
Sbjct: 232 QKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAY 291
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G R+AL F +M GV PD+VT + ++++C++ G+++ G + M + + +
Sbjct: 292 QGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFV 351
Query: 182 HYACVVDMYGRAGLLEEA 199
A ++DMY + G ++EA
Sbjct: 352 GNA-LLDMYAKCGSIDEA 368
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 4/208 (1%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
EP+ T+ VL A + I + GQ +H+ + + V N ++ +Y CG +
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+ ++D++SW+T+I G +A++ F M + D T + ++SACS+ G
Sbjct: 167 KVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLG 226
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
++ G + + ++ ++DMY + L A EMP++ W A+
Sbjct: 227 DLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVK-NVVTWNAM 285
Query: 219 LNACRIH-RNDEMFDPIRQELVNKKGVS 245
++ R E D R ++ KGV
Sbjct: 286 ISGLAYQGRYREALDTFR--MMQDKGVK 311
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W MI GYA+ G EA+ VF M+ + + NE ++V VLSAC+ + L
Sbjct: 204 MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ-MEGVKLNEVSMVLVLSACTHLQVLDH 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ RY + ++ +G A+++MY KCG+V A+QVF + +++ +WS+ I GLA
Sbjct: 263 GRWVHAYVE-RYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLA 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G ++L LF+ M GV P+ +TFI+++ CS GLV++G F +M VY I PQ
Sbjct: 322 MNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQL 381
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VDMYGRAG L+EA FI MP+ W ALL+ACR+++N E+ + ++++V
Sbjct: 382 EHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVE 441
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A WE + +R ++ G+KK GCS IEV+ +
Sbjct: 442 LEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEV 493
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 91/166 (54%), Gaps = 4/166 (2%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++N KCGD+ A ++F+ + +D ++W+ +I+G A G R+AL +F LM + GV
Sbjct: 183 AMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKL 242
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EA 201
++V+ + ++SAC+H ++D G + A Y++ +VDMY + G ++ A +
Sbjct: 243 NEVSMVLVLSACTHLQVLDHGRWV-HAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQV 301
Query: 202 F--IREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
F ++E + S G L + ++F+ +++E V G++
Sbjct: 302 FWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGIT 347
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW+TMI GYA G ++A+ +F +M+ ++ +P+ T+V VLSAC+++ AL
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ-SENLKPDCYTMVGVLSACATLGALDL 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S + R + + ++G A+I+MY KCG V A ++F + KD + W+ ++ GL+
Sbjct: 335 GIWASSLMD-RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLS 393
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG + LFSL+ +G+ PD+ TFI L+ C+HGG V++G F M V+ + P
Sbjct: 394 MNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSI 453
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA I MP++ VWGALL C++H++ + + + ++L+
Sbjct: 454 EHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + +SN ++G RWE+A KIR ++ ++K CSWIE++
Sbjct: 514 LEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VVSWT +I GY G EA+ F+++ + +P+ +LV VL+AC+ + +
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG-LKPDSFSLVKVLAACARLGDCTS 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ YIS + + V ++++MYVKCG++ A +F+ + KD++SWST+I G A
Sbjct: 234 GEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +QAL LF M + PD T + ++SAC+ G +D G I ++ E +
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNP 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G + +A M + VW A++
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMK-RKDRVVWNAMM 389
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W TMI G + ++A+ ++ M + PN T+ VL AC+ + G +
Sbjct: 78 NIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKI 136
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
HS + YD V V +++++YVKC + A++VF+ + K+++SW+ +I+G +G
Sbjct: 137 HSLLVKAGYDHDV--FVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSG 194
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQT 180
R+A+ F ++ G+ PD + + +++AC+ G G + + +S + T
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G LE A MP E + W ++
Sbjct: 255 S----LLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQG 290
Score = 40.8 bits (94), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H+ + R L N + N ++ + G + VF+ + ++ W+T+I GL
Sbjct: 33 KHIHARL-LRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
C A+ L+ M G P++ T ++ AC+ V GL
Sbjct: 92 KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGL 134
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSWT MI GY + + +FQEM + P T+V VLS C+ I A
Sbjct: 195 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 254
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH Y++ T DL V+ V NA+++MY K G + +A+++F + +D+ SW+T+ISGL
Sbjct: 255 GSSVHGYVNKTNLDLDVT--VNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGL 312
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G G AL+ FS M +GV P++VT ++++SACSH GLV +G LF+ M + I P+
Sbjct: 313 ALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPK 372
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
QHY C+VD+ GRAGLL EA+ I MPI+ + +W +LL+AC +H N + + + ++
Sbjct: 373 IQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMII 432
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+ N + A RWEDA K R +R +KKK GCSW+EVN
Sbjct: 433 ELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVN 482
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 48/259 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSWT +I Y +A S+F + + P+ +V +SAC LS G+ V
Sbjct: 67 DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSG-LRPDSFCVVGAVSACGHRKDLSNGRIV 125
Query: 65 HSYISTRYDLSVSNLVGNAVINMY-------------------------------VKCGD 93
H + R++L +VGNA+I+MY +KC D
Sbjct: 126 HGMV-FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND 184
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALIS 152
+ A ++F+ + ++ +SW+ +I+G L+LF M G +P +T +A++S
Sbjct: 185 IEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLS 244
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQH------YACVVDMYGRAGLLEEAEAFIREM 206
C+ G D G S+V+ V +T ++DMY ++G L A +EM
Sbjct: 245 GCADIGAFDLG-------SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 297
Query: 207 PIEAEWSVWGALLNACRIH 225
P +S W +++ +H
Sbjct: 298 PKRDVFS-WTTMISGLALH 315
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDL-SVSNLVGNAVINMYVKCGDVGIAIQ 99
N T +L C S+ L + +H T L S + ++N Y + G A +
Sbjct: 2 NTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQK 58
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VFN + D++SW+ +IS +A +FS + +G+ PD + +SAC H
Sbjct: 59 VFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKD 118
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ G I+ M +E+ ++DMY R+G +E A + + M I+ + S W +LL
Sbjct: 119 LSNGRIV-HGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK-DVSSWTSLL 176
Query: 220 NA 221
N
Sbjct: 177 NG 178
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 178/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW+ MI GY++ G EEA+ F EM++ E N ++ LS CS+I+AL
Sbjct: 140 MPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCE-RLNRSSFTCALSTCSNIAALEL 198
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A F + KD++SW+T+I G A
Sbjct: 199 GRQLHCRL-VKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYA 257
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL +F LM G+ PDD T +++++ACSH GLVDQG F +M+ Y I +
Sbjct: 258 RHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKL 317
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG LEEA+ ++ MP E + + WGALL A RIH N E+ + Q +
Sbjct: 318 VHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFE 377
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S +A + RW DA K+R E+R G+KK G SW+EV I
Sbjct: 378 MEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKI 429
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 108/255 (42%), Gaps = 46/255 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+ SW M+ GY + A ++F+ M + +++S + +S +
Sbjct: 21 MPERDLFSWNVMLTGYVRNRDLKTARALFERMPER-----------DIVSWNAMLSGYAQ 69
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQ-------------------- 99
+V Y + + N + N ++ YV+ G + A +
Sbjct: 70 NGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGF 129
Query: 100 ------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+F+ + +D ISWS +I+G + NGC +AL F M + + +F +S
Sbjct: 130 VRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALST 189
Query: 154 CSHGGLVDQGLILF-KAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIEA 210
CS+ ++ G L + + Y QT Y ++ MY + G ++EA +E+ +E
Sbjct: 190 CSNIAALELGRQLHCRLVKAGY----QTGWYVGNALLAMYCKCGSIDEARDAFQEI-LEK 244
Query: 211 EWSVWGALLNACRIH 225
+ W +++ H
Sbjct: 245 DVVSWNTMIHGYARH 259
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW+ +I GYA+ E +++F EM+ + P+E LV+V+SAC+ ++AL
Sbjct: 396 MPEKDIVSWSAVISGYAQHDCFSETLALFHEMQ-LGQIRPDETILVSVISACTHLAALDQ 454
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+YI + L V+ ++G +++MY+KCG V A++VFN + K + SW+ +I GLA
Sbjct: 455 GKWVHAYIR-KNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLA 513
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++L +FS M NGV P+++TF+ ++ AC H GLVD+G F +M + I P
Sbjct: 514 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNV 573
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EAE I MP+ + + WGALL AC+ H + EM + + ++L+
Sbjct: 574 KHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIE 633
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN FA WED ++R +++ G+ K GCS IE N
Sbjct: 634 LQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 682
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 132/275 (48%), Gaps = 47/275 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+VSW+ +I GY + G EEA+ +F EM +E +V+VLSAC+ +S +
Sbjct: 264 MDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLSIVKT 322
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMY-------------------------------V 89
G+ +H + S NL NA+I+MY +
Sbjct: 323 GKMIHGLVIRMGIESYVNL-QNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCM 381
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KCG V A +F+++ KD++SWS VISG A + C + L LF M + + PD+ ++
Sbjct: 382 KCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441
Query: 150 LISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+ISAC+H +DQG + K V I+ T ++DMY + G +E A
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTT-----LLDMYMKCGCVENALEVFNG 496
Query: 206 MPIEAEWSVWGALLNACRIH----RNDEMFDPIRQ 236
M E S W AL+ ++ R+ +MF ++
Sbjct: 497 ME-EKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 530
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 41/162 (25%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D VSW +++ GY ++G EEA +F +M + N++++
Sbjct: 203 PVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQR-----------NIVAS---------- 241
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N++I + K G V A ++FN + KDM+SWS +ISG
Sbjct: 242 --------------------NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQ 281
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG +AL +F M NG+ D+V ++++SAC+H +V G
Sbjct: 282 NGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 323
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
++Q+F+ + + W+T++ + +AL L+ LM+ N V PD+ T+ ++ AC+
Sbjct: 94 SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 153
Query: 156 -----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
G + ++ S VY V T +++MY G + +A E P+
Sbjct: 154 RLLEFGGKEIHDHVLKVGFDSDVY--VQNT-----LINMYAVCGNMRDARKLFDESPVLD 206
Query: 211 EWSVWGALL 219
S W ++L
Sbjct: 207 SVS-WNSIL 214
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 185/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SW T+IGGY++ + EA+S+F + + K P+E T+ VL AC+S+SA
Sbjct: 307 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 366
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R V N++++MY KCG + +A +F+ +A KD++SW+ +I+G
Sbjct: 367 GREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 425
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+ LF+ M G+ D+++F++L+ ACSH GLVD+G F M +I P
Sbjct: 426 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 485
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDM R G L +A FI MPI + ++WGALL CRIH + ++ + + +++
Sbjct: 486 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 545
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + LM+N +A A++WE ++R I + GL+K GCSWIE+ +
Sbjct: 546 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 597
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 8/199 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VVS+T+MI GYA G EAV +F+EME+ + P+ T+ VL+ C+ L
Sbjct: 206 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDE 264
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I DL V NA+++MY KCG + A VF+ + KD+ISW+T+I G +
Sbjct: 265 GKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 323
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVP 178
N +AL LF+L++ F PD+ T ++ AC+ D+G I M Y
Sbjct: 324 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---F 380
Query: 179 QTQHYA-CVVDMYGRAGLL 196
+H A +VDMY + G L
Sbjct: 381 SDRHVANSLVDMYAKCGAL 399
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 15/215 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I GY G E+ +SVF +M E + AT+V+V + C+ +S
Sbjct: 105 MTERDVISWNSIINGYVSNGLAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCADSRLISL 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS I + S + N +++MY KCGD+ A VF ++ + ++S++++I+G A
Sbjct: 164 GRAVHS-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 222
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A++LF M G+ PD T A+++ C+ L+D+G V+E + +
Sbjct: 223 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-------KRVHEWIKEN 275
Query: 181 QH------YACVVDMYGRAGLLEEAEAFIREMPIE 209
++DMY + G ++EAE EM ++
Sbjct: 276 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 310
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 103/198 (52%), Gaps = 3/198 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ A+ G ++ +F++M + E + T V + SS+ ++ G+ +H +I
Sbjct: 12 WNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 70
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ N VGN+++ Y+K V A +VF+ + +D+ISW+++I+G NG +
Sbjct: 71 -LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 129
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L +F M+++G+ D T +++ + C+ L+ G + ++ + + ++D
Sbjct: 130 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLD 188
Query: 189 MYGRAGLLEEAEAFIREM 206
MY + G L+ A+A REM
Sbjct: 189 MYSKCGDLDSAKAVFREM 206
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 178/292 (60%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW T+I GY + G EA+ ++ +M + +P + T V+VL A S + L
Sbjct: 331 LPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQ 390
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ +S + L++ V +I++Y KCG + A+ +F + + W+ +I+GL
Sbjct: 391 GMRMHA-LSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLG 449
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL LFS M + PD VTF++L++ACSH GLVDQG F M TVY IVP
Sbjct: 450 VHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIA 509
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM GRAG L+EA FI+ MPI+ + +VWGALL ACRIH N EM Q L
Sbjct: 510 KHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFE 569
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + LMSN +A +W+ + +R +RR L+K G S +EV S+
Sbjct: 570 LDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSV 621
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 10/251 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+V+W ++I + G AV +F M ++ P+ TLV++ SA +
Sbjct: 229 MALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC-PDVLTLVSLASAVAQCGDELG 287
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH Y+ R +D+ + GNA+++MY K + A +VF+ L +D++SW+T+I+G
Sbjct: 288 AKSVHCYVRRRGWDVG-DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGY 346
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +A+++++ M + G+ P TF++++ A S+ G + QG+ + A+S +
Sbjct: 347 MQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRM-HALSIKTGLNL 405
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
C++D+Y + G L EA MP + W A++ +H + +F +
Sbjct: 406 DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRST-GPWNAIIAGLGVHGHGAKALSLFSQM 464
Query: 235 RQELVNKKGVS 245
+QE + V+
Sbjct: 465 QQEEIKPDHVT 475
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +W M+ G +AV++ M A + TL +VL C + +
Sbjct: 128 MPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG-DAVTLSSVLPMCVVLGDRAL 186
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y + ++ LS V NA+I++Y K G + A VF +A +D+++W+++IS
Sbjct: 187 ALVMHVY-AVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANE 245
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
G A++LF M+ +GV PD +T ++L SA + G
Sbjct: 246 QGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCG 283
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
++++ Y++ G V A +VF+ + +D+ +W+ ++SGL N A+ L M+ GV
Sbjct: 107 SLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAG 166
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAE 200
D VT +++ C G D+ L L + V + + + C ++D+YG+ G+L EA
Sbjct: 167 DAVTLSSVLPMCVVLG--DRALALVMHVYAVKHGL-SGELFVCNALIDVYGKLGMLTEAH 223
Query: 201 AFIREMPIEAEWSVWGALLNA 221
M + + W ++++A
Sbjct: 224 WVFGGMALR-DLVTWNSIISA 243
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW+TMI GYA G ++A+ +F +M+ ++ +P+ T+V VLSAC+++ AL
Sbjct: 276 MPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQ-SENLKPDCYTMVGVLSACATLGALDL 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S + R + + ++G A+I+MY KCG V A ++F + KD + W+ ++ GL+
Sbjct: 335 GIWASSLMD-RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLS 393
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG + LFSL+ +G+ PD+ TFI L+ C+HGG V++G F M V+ + P
Sbjct: 394 MNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSI 453
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA I MP++ VWGALL C++H++ + + + ++L+
Sbjct: 454 EHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + +SN ++G RWE+A KIR ++ ++K CSWIE++
Sbjct: 514 LEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VVSWT +I GY G EA+ F+++ + +P+ +LV VL+AC+ + +
Sbjct: 175 IPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMG-LKPDSFSLVKVLAACARLGDCTS 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ YIS + + V ++++MYVKCG++ A +F+ + KD++SWST+I G A
Sbjct: 234 GEWIDRYISDS-GMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +QAL LF M + PD T + ++SAC+ G +D G I ++ E +
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLG-IWASSLMDRNEFLSNP 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G + +A M + + VW A++
Sbjct: 352 VLGTALIDMYSKCGSVTQAWEIFTAMK-KKDRVVWNAMM 389
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 109/221 (49%), Gaps = 12/221 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W TMI G + ++A+ ++ M + PN T+ VL AC+ + G +
Sbjct: 78 NIFLWNTMIRGLVSKDCFDDAIHLYGSM-RGGGFLPNNFTIPFVLKACARKLDVRLGLKI 136
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
HS + YD V V +++++YVKC + A++VF+ + K+++SW+ +I+G +G
Sbjct: 137 HSLLVKAGYDHDV--FVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSG 194
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQT 180
R+A+ F ++ G+ PD + + +++AC+ G G + + +S + T
Sbjct: 195 HFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVAT 254
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G LE A MP E + W ++
Sbjct: 255 S----LLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQG 290
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++H+ + R L N + N ++ + G + VF+ + ++ W+T+I GL
Sbjct: 33 KHIHARL-LRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVS 91
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
C A+ L+ M G P++ T ++ AC+ V GL
Sbjct: 92 KDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGL 134
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 181/290 (62%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW M+ GY F EA+ F +M E +PNEA LV++LSAC+ + AL
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H YI L SN + A+I+MY KCG + A +VF+ L +D+++W+++ISGL+
Sbjct: 309 GKWIHVYIDKNRILLSSN-ISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 367
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G + L FS M+ G PDD+T + +++ CSH GLV++GL +F M ++ IVP+
Sbjct: 368 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKL 427
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG LE A I+ MP+E + W ALL+ACRIH + ++ + I +
Sbjct: 428 EHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487
Query: 241 K-KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G G + L+SN +A +WE K+R + + G + GCSWIE++
Sbjct: 488 LCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEID 537
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 117/252 (46%), Gaps = 39/252 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISAL-SFGQYVHS 66
W MI Y++ +E++ +F +M + ++ T V +ACS L +G+ VH
Sbjct: 122 WNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHG 181
Query: 67 YI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG-- 123
+ Y+ + VGN+++NMY + A +VF+ + +D+I+W++V+ G AM G
Sbjct: 182 MVVKDGYESDI--FVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGEL 239
Query: 124 ----------CGR-------------------QALQLFSLMIING-VFPDDVTFIALISA 153
GR +ALQ F+ M+ + V P++ ++++SA
Sbjct: 240 VRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSA 299
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+H G +DQG + + I+ + ++DMY + G ++ A + + +
Sbjct: 300 CAHLGALDQGKWIHVYIDK-NRILLSSNISTALIDMYAKCGRIDCARRVFDGLH-KRDLL 357
Query: 214 VWGALLNACRIH 225
W ++++ +H
Sbjct: 358 TWTSMISGLSMH 369
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 189/292 (64%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ W +++ GYA +G +E+ + F EM ++ + E + T+V +++ CSS+ AL
Sbjct: 672 MEQRNTALWNSILAGYANKGLKKESFNHFLEMLES-DIEYDVLTMVTIVNLCSSLPALEH 730
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS I + ++ S ++ A+++MY KCG + A VF+ + K+++SW+ +ISG +
Sbjct: 731 GDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYS 790
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+GC ++AL L+ M G++P++VTF+A++SACSH GLV++GL +F +M Y I +
Sbjct: 791 KHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKA 850
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE+A+ F+ +MPIE E S WGALL ACR+H++ +M Q L
Sbjct: 851 EHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFE 910
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + +MSN +A A RW++ IR ++ G+KK G SWIE+N I
Sbjct: 911 LDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEI 962
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 131/245 (53%), Gaps = 21/245 (8%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+ VS+ ++ GY + G EEA+ ++ +M+ +P++ T +L+ C++ + G+
Sbjct: 440 ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGR 499
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+++ R +++ + +V +++MY +CG + A ++FN +A ++ SW+++I G N
Sbjct: 500 QIHAHL-IRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQN 558
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISAC-----SHGGLVDQGLILFKAMST--VYE 175
G ++AL+LF M +NG+ PD + +++S+C S G I+ M + +
Sbjct: 559 GETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQ 618
Query: 176 IVPQTQHYACVVDMYGRAGLLEEA----EAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
+V +VDMY + G ++ A + I++ I V A +N+ R + +F
Sbjct: 619 VV--------LVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMV-SAFVNSGRANDAKNLF 669
Query: 232 DPIRQ 236
D + Q
Sbjct: 670 DQMEQ 674
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 132/258 (51%), Gaps = 14/258 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ V+W ++I A+ G +A+ +F M+++ + N L ++L A + ++ +
Sbjct: 337 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESG-YKSNRFNLGSILMASAGLADIGK 395
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R L+ ++G+A+++MY KCG V A QVF L ++ +S++ +++G
Sbjct: 396 GRELHGHL-VRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 176
G +AL+L+ M +G+ PD TF L++ C++ +QG + + + I
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 514
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ +T+ +V MY G L A+ M +S W +++ +N E + +R
Sbjct: 515 IVETE----LVHMYSECGRLNYAKEIFNRMAERNAYS-WNSMIEG--YQQNGETQEALRL 567
Query: 237 -ELVNKKGVSVGTFALMS 253
+ + G+ F+L S
Sbjct: 568 FKQMQLNGIKPDCFSLSS 585
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VV+W +I GY + EEA +F M K P+ T + L C ++ + G+ VH
Sbjct: 241 VVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVC-PDNFTFASALRVCGALRSRDGGKQVH 299
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
S + VGNA+I+MY KC D ++VF+ + ++ ++W+++IS A G
Sbjct: 300 SKL-IACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHF 358
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-- 183
AL LF M +G + +++ A + GL D G K +V +
Sbjct: 359 NDALVLFLRMQESGYKSNRFNLGSILMASA--GLADIG----KGRELHGHLVRNLLNSDI 412
Query: 184 ---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +VDMY + G++EEA R + +E + ALL
Sbjct: 413 ILGSALVDMYSKCGMVEEAHQVFRSL-LERNEVSYNALL 450
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++ +W TMI YA E + ++ M + ++ T +V+ AC ++ +
Sbjct: 135 MPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAMEDMGG 193
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + S + + L+ + VG A+++ Y + G + A+ + + +++W+ VI+G
Sbjct: 194 VRQLQSSV-VKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYV 252
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
+A +F M+ GV PD+ TF + + C
Sbjct: 253 KILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCG---D 93
++ N +++ C ++ G+ +H+ IS Y+ + ++ +Y + G D
Sbjct: 67 SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDA--YLMTKILMLYARSGCLDD 124
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ A ++F + +++ +W+T+I A + L+L+ M +G F D TF ++I A
Sbjct: 125 LCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKA 184
Query: 154 C 154
C
Sbjct: 185 C 185
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 186/287 (64%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW +IGGY +EA+ +FQEM ++ E+ PN+ T++++L AC+ + A+ G++
Sbjct: 259 KDVISWNILIGGYTHLNLYKEALLLFQEMLRSGES-PNDVTMLSILHACAHLGAIDIGRW 317
Query: 64 VHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI R ++ ++ + ++I+MY KCGD+ A QVFN + +K + +W+ +I G AM+
Sbjct: 318 IHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMH 377
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A +FS M N + PDD+TF+ L+SACSH G++D G +F++M+ Y+I P+ +H
Sbjct: 378 GRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEH 437
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + Q L +
Sbjct: 438 YGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIE 497
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G++ L+SN +A A RW + +IR + G+KK GCS IE++
Sbjct: 498 PNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEID 544
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 130/234 (55%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GY E G +EA+ +F+EM KT P+E+T+V V+SA + ++
Sbjct: 155 IPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN-VRPDESTMVTVISASARSGSIEL 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I+ S +V NA+I+ Y KCG++ A +F L+YKD+ISW+ +I G
Sbjct: 214 GRQVHSWIADHGFGSNLKIV-NALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYT 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 273 HLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNA 332
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A M + W A++ +H R + FD
Sbjct: 333 SSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMIFGFAMHGRANAAFD 385
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 36/227 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ + A G +
Sbjct: 27 NLLIWNTMFRGHALSPDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKLKASKEGLQI 85
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKC-------------------------------G 92
H ++ Y+L + V ++I+MYV+ G
Sbjct: 86 HGHVLKLGYELDL--YVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRG 143
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A +F+ + KD++SW+ +ISG G ++AL+LF M+ V PD+ T + +IS
Sbjct: 144 YIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVIS 203
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
A + G ++ G + ++ + + ++D Y + G +E A
Sbjct: 204 ASARSGSIELGRQVHSWIAD-HGFGSNLKIVNALIDFYSKCGEMETA 249
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 39/195 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + +W MI G+A G A +F M K E +P++ T V +LSACS L
Sbjct: 359 MLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKN-EIKPDDITFVGLLSACSHAGMLDL 417
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ ++ Y ++ + + +I L
Sbjct: 418 GRHIFRSMTHNYKIT-------------------------------PKLEHYGCMIDLLG 446
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ++A ++ S M + PD V + +L+ AC G V+ G K +++I P
Sbjct: 447 HSGLFKEAEEMISTMTME---PDGVIWCSLLKACKMHGNVELGE---KFAQNLFKIEPNN 500
Query: 181 Q-HYACVVDMYGRAG 194
Y + ++Y AG
Sbjct: 501 PGSYVLLSNIYATAG 515
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
AI VF + +++ W+T+ G A++ AL+L+ MI G+ P+ TF L+ +C+
Sbjct: 16 AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75
Query: 156 ----------HGGLVDQG--LILFKAMSTV------------YEIVPQTQH-----YACV 186
HG ++ G L L+ S + +++ ++ H Y +
Sbjct: 76 LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V Y G +E A E+P++ S W A+++
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVS-WNAMISG 169
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +D V+W+ MIGGYA G AV++F+EM+ T P+E T+V+VLSAC+ + AL G
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVC-PDEITMVSVLSACADLGALELG 352
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+++ SYI R ++ S + NA+I+M+ KCGDV A++VF + + ++SW+++I GLAM
Sbjct: 353 KWLESYIE-RKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAM 411
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G +A+ +F M+ GV PDDV FI ++SACSH GLVD+G F M ++ IVP+ +
Sbjct: 412 HGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIE 471
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C+VDM RAG + EA F+R MP+E +W +++ AC ++ + + +EL+ +
Sbjct: 472 HYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKELIRR 531
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + L+SN +A RWE K+R+ + G++K G + IE+N I+
Sbjct: 532 EPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIY 583
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 126/264 (47%), Gaps = 13/264 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D + T+I +A+ + F + PN+ T VL AC+ + L G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI-----AIQVFNMLAYKDMISWSTVI 116
VH+ + ++ V N +++MY C G A +VF+ KD ++WS +I
Sbjct: 247 GAVHASM-VKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMI 305
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
G A G +A+ LF M + GV PD++T ++++SAC+ G ++ G L ++ I
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWL-ESYIERKNI 364
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE---MFD 232
+ + ++DM+ + G ++ A REM + S W +++ +H R E +FD
Sbjct: 365 MRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVS-WTSMIVGLAMHGRGLEAVLVFD 423
Query: 233 PIRQELVNKKGVS-VGTFALMSNT 255
+ ++ V+ V+ +G + S++
Sbjct: 424 EMMEQGVDPDDVAFIGVLSACSHS 447
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R +VSWT+MI G A G EAV VF EM + + +P++ + VLSACS +
Sbjct: 394 MKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMME-QGVDPDDVAFIGVLSACSHSGLVDK 452
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G Y + + + + +++M + G V A++ V M + + W ++++
Sbjct: 453 GHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTAC 512
Query: 120 AMNG 123
G
Sbjct: 513 HARG 516
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSWT MI GY +EA+ +F+ M+ T +P+E T+V+VL+AC+ + AL
Sbjct: 332 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL 390
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI R + V NA+I+MY KCGDV A +F ++ +D +W+ +I GLA
Sbjct: 391 GEWIRTYID-RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 449
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +AL +FS M+ + PD++T+I ++SAC+H GLVD+G F M++ + I P
Sbjct: 450 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNI 509
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ RAG L+EA I MPI+A VWGALL CR++R +M + + ++++
Sbjct: 510 AHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE 569
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+ N +A RW D ++R + G+KK GCS IE+N
Sbjct: 570 LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMN 618
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 39/251 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK DV++W +I Y + G EE+ +F ME K+ P TLV VLSACS + L G
Sbjct: 201 PKADVITWNMIISAYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDLRTG 259
Query: 62 QYVHSYISTRYDLSV-SNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VHSY+ + V SNLV NA+I+MY CG++ A+ +F + +D+ISW+T++SG
Sbjct: 260 KKVHSYVK---NCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF 316
Query: 120 A--------------------------MNGCGR-----QALQLFSLMIINGVFPDDVTFI 148
++G R +AL+LF M V PD+ T +
Sbjct: 317 TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMV 376
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
++++AC+H G ++ G + + +I ++DMY + G +++AE+ REM
Sbjct: 377 SVLTACAHLGALELGEWI-RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435
Query: 209 EAEWSVWGALL 219
+++ W A++
Sbjct: 436 RDKFT-WTAMI 445
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ W TMI GY+ F + VS++ EM + + +P+ T + + AL +
Sbjct: 99 IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFLFKGFTRDIALEY 157
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ ++ L + V A++ MY+ CG + A VF++ D+I+W+ +IS
Sbjct: 158 GRQLHGHV-LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 216
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++ +LF +M V P VT + ++SACS + G + + ++
Sbjct: 217 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC-KVESNL 275
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY G ++ A R M
Sbjct: 276 VLENAMIDMYADCGEMDSALGIFRSM 301
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGD 93
K P L+++L C S+ L Q VH + + L+ + ++ N V+ + GD
Sbjct: 33 KSFSPPTHPLISLLETCESMDQL---QQVHCQ-AIKKGLNANPVLQNRVMTFCCTHEYGD 88
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
A ++F+ + ++ W+T+I G + + + L+ M+ GV PD TF L
Sbjct: 89 FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 148
Query: 154 CS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+ HG ++ GL Y + T +V MY G L+ A
Sbjct: 149 FTRDIALEYGRQLHGHVLKHGL--------QYNVFVHT----ALVQMYLLCGQLDTARGV 196
Query: 203 IREMPIEAEWSVWGALLNA 221
P +A+ W +++A
Sbjct: 197 FDVCP-KADVITWNMIISA 214
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 186/288 (64%), Gaps = 4/288 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E+ PN+ T++++L AC+ + A+ G++
Sbjct: 284 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTMLSILPACAHLGAIEIGRW 342
Query: 64 VHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H YI+ R V+N + ++I+MY KCGD+ A QVF+ + + + SW+ +I G AM
Sbjct: 343 IHVYINKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAM 401
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G A +FS M N + PDD+TF+ L+SACSH G++D G +F++M Y+I P+ +
Sbjct: 402 HGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLE 461
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + Q L+
Sbjct: 462 HYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKI 521
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + KIR + G+KK GCS IE++
Sbjct: 522 EPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 569
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 141/234 (60%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F+EM KT P+E+T+V+V+SAC+ +++
Sbjct: 180 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-VRPDESTMVSVVSACAQSASIEL 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I S +V NA+I++Y+KCG+V A +F L+YKD+ISW+T+I G
Sbjct: 239 GRQVHSWIDDHGFGSNLKIV-NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQ 179
++AL LF M+ +G P+DVT ++++ AC+H G ++ G + ++ + +
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+ H ++DMY + G +E A+ + + S W A++ +H R + FD
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFD 410
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ A GQ +
Sbjct: 52 NLLIWNTMFRGHALSSDPVSALYLYVCM-ISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 110
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----------------- 106
H ++ YDL + V ++I+MYV+ G + A +VF+ ++
Sbjct: 111 HGHVLKLGYDLDL--YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 168
Query: 107 --------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
KD++SW+ +ISG A G ++AL+LF M+ V PD+ T ++++S
Sbjct: 169 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 228
Query: 153 ACSHGGLVDQG 163
AC+ ++ G
Sbjct: 229 ACAQSASIELG 239
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSWT MI GY +EA+ +F+ M+ T +P+E T+V+VL+AC+ + AL
Sbjct: 311 MPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT-NVKPDEFTMVSVLTACAHLGALEL 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI R + V NA+I+MY KCGDV A +F ++ +D +W+ +I GLA
Sbjct: 370 GEWIRTYID-RNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLA 428
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +AL +FS M+ + PD++T+I ++SAC+H GLVD+G F M++ + I P
Sbjct: 429 VNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNI 488
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ RAG L+EA I MPI+A VWGALL CR++R +M + + ++++
Sbjct: 489 AHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE 548
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+ N +A RW D ++R + G+KK GCS IE+N
Sbjct: 549 LEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMN 597
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 130/251 (51%), Gaps = 39/251 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK DV++W +I Y + G EE+ +F ME K+ P TLV VLSACS + L G
Sbjct: 180 PKADVITWNMIISAYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLVLSACSKLKDLRTG 238
Query: 62 QYVHSYISTRYDLSV-SNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VHSY+ + V SNLV NA+I+MY CG++ A+ +F + +D+ISW+T++SG
Sbjct: 239 KKVHSYVK---NCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF 295
Query: 120 A--------------------------MNGCGR-----QALQLFSLMIINGVFPDDVTFI 148
++G R +AL+LF M V PD+ T +
Sbjct: 296 TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMV 355
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
++++AC+H G ++ G + + +I ++DMY + G +++AE+ REM
Sbjct: 356 SVLTACAHLGALELGEWI-RTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 414
Query: 209 EAEWSVWGALL 219
+++ W A++
Sbjct: 415 RDKFT-WTAMI 424
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ W TMI GY+ F + VS++ EM + + +P+ T + + AL +
Sbjct: 78 IPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFLFKGFTRDIALEY 136
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ ++ L + V A++ MY+ CG + A VF++ D+I+W+ +IS
Sbjct: 137 GRQLHGHV-LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYN 195
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++ +LF +M V P VT + ++SACS + G + + ++
Sbjct: 196 KVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNC-KVESNL 254
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY G ++ A R M
Sbjct: 255 VLENAMIDMYADCGEMDSALGIFRSM 280
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGD 93
K P L+++L C S+ L Q VH + + L+ + ++ N V+ + GD
Sbjct: 12 KSFSPPTHPLISLLETCESMDQL---QQVHCQ-AIKKGLNANPVLQNRVMTFCCTHEYGD 67
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
A ++F+ + ++ W+T+I G + + + L+ M+ GV PD TF L
Sbjct: 68 FQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKG 127
Query: 154 CS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+ HG ++ GL Y + T +V MY G L+ A
Sbjct: 128 FTRDIALEYGRQLHGHVLKHGL--------QYNVFVHT----ALVQMYLLCGQLDTARGV 175
Query: 203 IREMPIEAEWSVWGALLNA 221
P +A+ W +++A
Sbjct: 176 FDVCP-KADVITWNMIISA 193
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 188/288 (65%), Gaps = 5/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +SW+ MI GY + G EA+ +F +M+K K P + L +VLSAC+++ AL
Sbjct: 262 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALDQ 320
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y + R + + ++G ++++MY KCG + +A +VF ++ K++ SW+ +I GLA
Sbjct: 321 GRWIHTY-AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLA 379
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ LFS M IN P+++TF+ +++AC+HGGLV +GL +F +M Y + PQ
Sbjct: 380 MHGRAEDAIDLFSKMDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 436
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EAE + +P E +VWGALL ACR H N E+ + + + L+
Sbjct: 437 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 496
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A A RWE+ ++R ++ G+K G S I++
Sbjct: 497 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDL 544
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 49/245 (20%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V W MI GY G E A +F+ M P+
Sbjct: 203 DAVCWNAMIDGYLRFGEVEAARELFEGM-------PDR---------------------- 233
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
S IST NA+I+ + +CG V +A + F+ + +D ISWS +I G GC
Sbjct: 234 -SMIST----------WNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 282
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF---KAMSTVYEIVPQTQ 181
+AL++F M + P +++SAC++ G +DQG + K S + V T
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 342
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVN 240
+VDMY + G ++ A +M E S W A++ +H R ++ D + +N
Sbjct: 343 ----LVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN 397
Query: 241 KKGVS 245
++
Sbjct: 398 PNEIT 402
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L G SYI+ S +N+ N ++ +++VF+ + ++ W+ +I
Sbjct: 58 LRTGHLQDSYIAGSLVKSYANVSTNRYLSFES-------SLRVFDFVRKPNVFLWNCMIK 110
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
N +A+ L+ M++ P+ T+ A++ ACS G+V +G + A + +
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEG-VQVHAHLVKHGLG 169
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + MY G L EA + + E + W A+++
Sbjct: 170 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 213
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 186/291 (63%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VVSW TMI A G EA+S F+EM+++ P++AT V VL AC+ + AL
Sbjct: 216 LPAKNVVSWNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDA 275
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ R+ +V +VGNA+++MY KCG V A +VF+ + +D+ +++++ISGLA
Sbjct: 276 GRWVHAYMMGRHTKAV--VVGNALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLA 333
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++AL L + M GV P+ VTF+ ++SAC H GLV++GL+ F A+ + P
Sbjct: 334 MHGRGQEALALLADMRRAGVRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGI 393
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVDM GRAG L+EAE + MP + +WG+LL+ACR H + + + + + +
Sbjct: 394 EHYGCVVDMLGRAGRLDEAEELVARMPARPDALIWGSLLSACRAHGHVARAERVMRRMAD 453
Query: 241 KKG--VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G G + LMSN +A R A ++R ++RR + K GCS IE++
Sbjct: 454 VDGDLADAGDYVLMSNMYASKGRHGKAVQLRKQMRRGRMDKVPGCSLIEID 504
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 100/211 (47%), Gaps = 19/211 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSWT M+ G+ G EEA ++F M + +AC+ L +
Sbjct: 119 DVVSWTAMVTGHTRLGLFEEAAALFLAMADGVAV--DAVAAAAAFAACAGAGDLGLARET 176
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + +++ + NA+I+MY KCGD ML K+++SW+T+I+ A +G
Sbjct: 177 HRRV-LDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSG 235
Query: 124 CGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
R+AL F M +G V PDD TF+A++ AC+ G +D G + M +H
Sbjct: 236 DTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYM--------MGRH 287
Query: 183 YACVV------DMYGRAGLLEEAEAFIREMP 207
VV DMY + G ++ A+ MP
Sbjct: 288 TKAVVVGNALLDMYAKCGAVDGAKEVFDAMP 318
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 187/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SWT MI Y++ G EA+ +F+EM ++K +P+E T+ +VLSAC+ +L
Sbjct: 270 MSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESK-VKPDEITVASVLSACAHTGSLDV 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H YI +YD+ VGNA+I+MY KCG V A++VF + KD +SW+++ISGLA
Sbjct: 329 GEAAHDYIQ-KYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLA 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL FS M+ V P F+ ++ AC+H GLVD+GL F++M VY + P+
Sbjct: 388 VNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEM 447
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G L+ A FI+EMP+ + +W LL+A ++H N + + ++L+
Sbjct: 448 KHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKLLE 507
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L SNT+AG++RWEDA K+R+ + + ++K +G S IE+
Sbjct: 508 LDPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEM 555
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 34/237 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW +++ GY + E + VF+ M + + + T+V V+ AC+S+
Sbjct: 138 MPERDLVSWNSLVCGYGQCKRFREVLGVFEAM-RVAGVKGDAVTMVKVVLACTSLGEWGV 196
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM-------------------------------YV 89
+ YI ++ + +GN +I+M Y
Sbjct: 197 ADAMVDYIEEN-NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYG 255
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
K G++ A ++F+ ++ +D+ISW+ +I+ + G +AL+LF M+ + V PD++T +
Sbjct: 256 KAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVAS 315
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++SAC+H G +D G + Y++ ++DMY + G++E+A +EM
Sbjct: 316 VLSACAHTGSLDVGEAAHDYIQK-YDVKADIYVGNALIDMYCKCGVVEKALEVFKEM 371
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 114/241 (47%), Gaps = 20/241 (8%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI G++ EA+ ++ M + + N T + + AC+ + +S G +H+ +
Sbjct: 45 WNIMIRGWSVSDQPNEAIRMYNLMYR-QGLLGNNLTYLFLFKACARVPDVSCGSTIHARV 103
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ V NA+INMY CG +G+A +VF+ + +D++SW++++ G R+
Sbjct: 104 -LKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREV 162
Query: 129 LQLFSLMIINGVFPDDVTFIALISACS---HGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
L +F M + GV D VT + ++ AC+ G+ D + + + ++
Sbjct: 163 LGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGN----T 218
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWS---VWGALL----NACRIHRNDEMFDPIRQEL 238
++DMYGR GL+ A +M +W W A++ A + E+FD + Q
Sbjct: 219 LIDMYGRRGLVHLARGVFDQM----QWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRD 274
Query: 239 V 239
V
Sbjct: 275 V 275
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++V+SWTTMI G+ G +EA+S+ Q+M +P+ TL LSAC+ + AL
Sbjct: 202 MPEKNVISWTTMIVGFVRIGMHKEALSLLQQM-LVAGIKPDSITLSCSLSACAGLGALEQ 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI + ++ + ++G + +MYVKCG++ A+ VF+ L K + +W+ +I GLA
Sbjct: 261 GKWIHTYIE-KNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLA 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL F+ M G+ P+ +TF A+++ACSH GL ++G LF++MS+VY I P
Sbjct: 320 IHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSM 379
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EA FI MP++ ++WGALLNAC++H++ E+ I + L+
Sbjct: 380 EHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIE 439
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +++ +A A W ++R +I+ GL GCS I +N
Sbjct: 440 LDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLN 488
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 125/278 (44%), Gaps = 48/278 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ V W TM+ Y+ E A+ ++ +M N T +L ACS++SA Q +
Sbjct: 74 NTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPH-NSYTFPFLLKACSALSAFEETQQI 132
Query: 65 HSYISTR-----------------------------YDLSVSNLVG-NAVINMYVKCGDV 94
H++I R L ++V N +I+ Y+K G++
Sbjct: 133 HAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNL 192
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
+A ++F + K++ISW+T+I G G ++AL L M++ G+ PD +T +SAC
Sbjct: 193 DMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSAC 252
Query: 155 SHGGLVDQGLILFKAMSTVYE-----IVPQTQHYACVV-DMYGRAGLLEEAEAFIREMPI 208
+ G ++QG K + T E I P CV+ DMY + G +E+A ++
Sbjct: 253 AGLGALEQG----KWIHTYIEKNEIKIDPV---LGCVLTDMYVKCGEMEKALLVFSKLEK 305
Query: 209 EAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVS 245
+ W A++ IH + E D Q + K G++
Sbjct: 306 KCV-CAWTAIIGGLAIHGKGREALDWFTQ--MQKAGIN 340
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 243 bits (620), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT +I G+AE+G +EA +++ +ME +P++ TL+++L+AC+ L
Sbjct: 277 MPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAG-LKPDDGTLISILAACAESGLLVL 335
Query: 61 GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ I R SV+ V NA+++MY KCG V A+ +FN ++ +D++SW+ ++ GL
Sbjct: 336 GKKVHASIKKIRIKCSVN--VSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGL 393
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +A+QLFS M G PD VT IA++ AC+H G VDQGL F +M + IVP
Sbjct: 394 AMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPH 453
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR G LEEA ++ MP+E +WG LL ACR+H + + + L+
Sbjct: 454 IEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLI 513
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G ++++SN FA A W +R +++ G++K +G S IE++ +
Sbjct: 514 TLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEV 566
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 120/241 (49%), Gaps = 16/241 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+VSW +MIGG + G A +F EM AE + + +L +S
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM-----AERDAVSWNTILDGYVKAGEMSQ 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + R +S S +V Y K GD+ +A +F+ + +K++++W+ +ISG A
Sbjct: 239 AFNLFEKMPERNVVSWSTMVSG-----YCKTGDMEMARMLFDKMPFKNLVTWTIIISGFA 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++A L++ M G+ PDD T I++++AC+ GL+ G + ++ + I
Sbjct: 294 EKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKI-RIKCSV 352
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQ 236
+VDMY + G +++A + EM + + W +L +H + E +F ++Q
Sbjct: 353 NVSNALVDMYAKCGRVDKALSIFNEMSMR-DLVSWNCMLQGLAMHGHGEKAIQLFSKMQQ 411
Query: 237 E 237
E
Sbjct: 412 E 412
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 34/215 (15%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C+ + + + VH+ I R +L V +I+ + C + +A+ VFN + +
Sbjct: 30 LHKCTDFNHI---KEVHAQIIKR-NLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPN 85
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
+ ++T+I N +A F M NG+F D+ T+ L+ AC+ G
Sbjct: 86 VHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGW--------- 136
Query: 169 AMSTVYEIVPQTQHYA---------CVVDMYGRAGLL--EEAEAFIREMPIEAEWSVW-- 215
+ TV I + Y ++D Y + GLL A EM E + W
Sbjct: 137 -LPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMG-EKDLVSWNS 194
Query: 216 --GALLNACRIHRNDEMFDPIRQELVNKKGVSVGT 248
G L+ A + R ++FD E+ + VS T
Sbjct: 195 MIGGLVKAGDLGRARKLFD----EMAERDAVSWNT 225
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 119/292 (40%), Positives = 186/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W M+ GY G EA+ +F EM+K A +E TLV+VL+AC+ + AL
Sbjct: 216 MPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAV-SEVTLVSVLTACAQMGALER 274
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VHSY+ +R + VS +G A+++MY KCG V ++++VF + +++ +W++ +SGLA
Sbjct: 275 GMWVHSYVCSR-GMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLA 333
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + L+LF M G+ P+ VTF+A++ CS GLV++G F +M +++ P
Sbjct: 334 MNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWL 393
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A FI MP+E VWGALLNA RIH N ++ +L
Sbjct: 394 EHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTE 453
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A + W+ +K+R+ ++ G+KK GCS IEV+ +
Sbjct: 454 IESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVDGKV 505
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
GDV A ++F+ + +D ++W+ +++G G R+AL LF M GV +VT ++++
Sbjct: 204 GDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVL 263
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
+AC+ G +++G+ + + + V T A +VDMY + G++
Sbjct: 264 TACAQMGALERGMWVHSYVCSRGMRVSVTLGTA-LVDMYSKCGVV 307
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 243 bits (619), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 182/288 (63%), Gaps = 4/288 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VVSW MIGGY +EA+ +F+ M ++ +PN+ T +++L AC+++ AL G++
Sbjct: 325 KNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN-IDPNDVTFLSILPACANLGALDLGKW 383
Query: 64 VHSYISTRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
VH+Y+ S+ N V ++I+MY KCGD+ +A ++F+ + K + +W+ +ISG AM
Sbjct: 384 VHAYVDKNMK-SMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAM 442
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G AL LFS M G PDD+TF+ +++AC H GL+ G F +M Y++ P+
Sbjct: 443 HGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLP 502
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C++D++GRAGL +EAE ++ M ++ + ++W +LL ACRIHR E+ + + + L
Sbjct: 503 HYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFEL 562
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +AGA RWED KIR + +KK GCS IEV+
Sbjct: 563 EPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 136/230 (59%), Gaps = 11/230 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-SISALS 59
+P RDVVSW MI GYA+ G EEA++ F+EM + K PN +T+++VLSAC+ S S+L
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK-VTPNVSTMLSVLSACAQSGSSLQ 278
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +V S+I R S LV N +I+MYVKCGD+ A +F + K+++SW+ +I G
Sbjct: 279 LGNWVRSWIEDRGLGSNIRLV-NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGY 337
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF----KAMSTVYE 175
C ++AL LF M+ + + P+DVTF++++ AC++ G +D G + K M ++
Sbjct: 338 THMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKN 397
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V + ++DMY + G L A+ M ++ + W A+++ +H
Sbjct: 398 TVAL---WTSLIDMYAKCGDLAVAKRIFDCMNTKS-LATWNAMISGFAMH 443
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 33/231 (14%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W MI G + A+ + M + EPNE T ++ +C+ I G+ VH+
Sbjct: 94 VIWNHMIRGLSSSESPFLALEYYVHMISSG-TEPNEYTFPSIFKSCTKIRGAHEGKQVHA 152
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDV-------------------------------G 95
++ + L + V ++INMY + G++
Sbjct: 153 HV-LKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLD 211
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F+ + +D++SW+ +ISG A +G +A+ F M V P+ T ++++SAC+
Sbjct: 212 EARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACA 271
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
G Q ++ + + ++DMY + G LEEA ++
Sbjct: 272 QSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKI 322
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
M + + +W MI G+A G + A+ +F M T E P++ T V VL+AC LS
Sbjct: 425 MNTKSLATWNAMISGFAMHGHTDTALGLFSRM--TSEGFVPDDITFVGVLTACKHAGLLS 482
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
G+ S + Y +S +I+++ + G
Sbjct: 483 LGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAG 515
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 104/256 (40%), Gaps = 49/256 (19%)
Query: 26 VSVFQEMEKTKEAEP----NEATLVNVLSACSSISALSFGQYVHSYIST----RYDLSVS 77
VS Q + + + P ++ + +LS C ++ L + +HS I ++S
Sbjct: 8 VSTLQVLSFSDPSPPYKLVHDHPSLTLLSNCKTLQTL---KQIHSQIIKTGLHNTHFALS 64
Query: 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
L+ ++ + GD+ A+ +F + + + W+ +I GL+ + AL+ + MI
Sbjct: 65 KLIEFCAVSPH---GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMIS 121
Query: 138 NGVFPDDVTFIALISACS---------------------HGGLVDQGLILFKAMS----- 171
+G P++ TF ++ +C+ H V LI A +
Sbjct: 122 SGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVN 181
Query: 172 --TVYEI--VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN----ACR 223
V++ + + ++ Y G L+EA E+P+ S W A+++ + R
Sbjct: 182 ARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVS-WNAMISGYAQSGR 240
Query: 224 IHRNDEMFDPIRQELV 239
+ F+ +R+ V
Sbjct: 241 VEEAMAFFEEMRRAKV 256
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 177/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD VSW MI GY++ G EA+ +F ME+ + N ++ + LS C+ + AL
Sbjct: 364 MPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER-EGGRLNRSSFSSALSTCADVVALEL 422
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A +F +A KD++SW+T+I+G +
Sbjct: 423 GKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 481
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL+ F M G+ PDD T +A++SACSH GLVD+G F M+ Y + P +
Sbjct: 482 RHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNS 541
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC+VD+ GRAGLLEEA ++ MP E + ++WG LL A R+H N E+ + ++
Sbjct: 542 QHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 601
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + RW D K+R +R G+KK G SWIE+
Sbjct: 602 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 649
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW T++ GYA+ G ++A VF M E N+ + +LSA S L
Sbjct: 147 MPERDVCSWNTILSGYAQNGCVDDARRVFDRM-----PEKNDVSWNALLSAYVQNSKLEE 201
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +R + ++ + N ++ +VK + A Q F+ + +D++SW+T+I+G A
Sbjct: 202 ACVL---FGSRENWAL--VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYA 256
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
NG +A QLF ++ VF T+ A++S +V++ LF M E+
Sbjct: 257 QNGEIDEARQLFDESPVHDVF----TWTAMVSGYIQNRMVEEARELFDRMPERNEV 308
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DV +WT M+ GY + EEA +F M E NE + +L+ +
Sbjct: 272 PVHDVFTWTAMVSGYIQNRMVEEARELFDRM-----PERNEVSWNAMLAGYVQGERVEMA 326
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + + R +VS N +I Y +CG + A +F+ + +D +SW+ +I+G +
Sbjct: 327 KELFDVMPCR---NVSTW--NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 381
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G +AL+LF LM G + +F + +S C+ ++ G L +V
Sbjct: 382 SGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHG------RLVKGGY 435
Query: 182 HYACVVD-----MYGRAGLLEEAEAFIREM 206
C V MY + G +EEA +EM
Sbjct: 436 ETGCFVGNALLLMYCKCGSIEEANDLFKEM 465
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 93/205 (45%), Gaps = 21/205 (10%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W I Y G C EA+ VF+ M + N + + ++ + F +
Sbjct: 58 DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE-- 115
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ +LV N +I YV+ ++G A ++F + +D+ SW+T++SG A NG
Sbjct: 116 ---------MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNG 166
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
C A ++F M +DV++ AL+SA +++ +LF + + +V +
Sbjct: 167 CVDDARRVFDRMPEK----NDVSWNALLSAYVQNSKLEEACVLFGSREN-WALVS----W 217
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPI 208
C++ + + + EA F M +
Sbjct: 218 NCLLGGFVKKKKIVEARQFFDSMKV 242
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 191/294 (64%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VV+WT +I G+ + G EEA+ +F EM+ +PNE T V+VL ACS ++AL
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ +H IS V+++V +A+INMY KCG++ +A ++F+ + ++D++SW+ +I+
Sbjct: 370 GQQIHQIISKTVYQEVADVV-SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G G +A+ LF M G PD+VT+IAL+SACSH GLVD+GL LF+ + I
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ H+ C+VD++GRAG L+EA FI+ + ++ SVW ALL C +H + ++ ++L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + GT+ ++SN +A +W +A +R +++ GLKK+ GCSWIEV ++
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 118/262 (45%), Gaps = 56/262 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM------------------EKTKEAEP-- 40
MP ++V+SW TMI GYA +G+ ++A+ +F+ M + EA+
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELF 214
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG------------------- 81
N +V+S + ++ LS + + V N+V
Sbjct: 215 NRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFK 274
Query: 82 -------------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
N +I +++ G + A+ F ++ K++++W+ VISG +G +A
Sbjct: 275 LFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEA 334
Query: 129 LQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQTQHYACV 186
L++FS M N V P++ TF++++ ACS + +G + + +S TVY+ V + +
Sbjct: 335 LKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV--VSAL 392
Query: 187 VDMYGRAGLLEEAEAFIREMPI 208
++MY + G LE A + I
Sbjct: 393 INMYSKCGELELARKIFDDGSI 414
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSWT +I GY + G EEA ++F + K NV++ + +S
Sbjct: 92 MPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIK----------NVVTWTALVSGYVR 141
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + V N++ N +I Y + G + A+ +F + ++++SW+TVI+
Sbjct: 142 WNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAF 201
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+A +LF+ M V +++ +++ S G +D +LF M V
Sbjct: 202 MQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRIDDARLLFDKMP-----VRN 252
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ ++ Y + L+EA +MP E E S W ++
Sbjct: 253 VVSWNTMIIGYAQNMRLDEAFKLFEQMP-ERELSSWNTMI 291
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 56 SALSFGQYVHSYISTRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
S S Q V S D S ++ V N +I K G +G A QVF + +D++SW+
Sbjct: 42 SQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWT 101
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
VI+G G +A LF N + VT+ AL+S +++ LF AM
Sbjct: 102 AVITGYIKCGMIEEAKTLFDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-- 156
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEM 230
V + +++ Y R G +++A MP W +V A + R+ E+
Sbjct: 157 ---VKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQEL 213
Query: 231 FD 232
F+
Sbjct: 214 FN 215
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 185/293 (63%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT+MIGGYA+ G +EA+ +F EME PNE T+V VL AC+ + L
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVL 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + S R + V N +I+MYVKCG + A ++F+ + + ++SWS +I+GLA
Sbjct: 264 GRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL LF+ MI GV P+ VTFI ++ ACSH G+V++G F +M+ Y IVP+
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++ RAGLL+EA FI MPI VWGALL C++H+N ++ + + L
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSK 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
++ G + ++SN +A A RWED ++R +R G+KK G S I V ++
Sbjct: 443 LDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVY 495
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 37/268 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W T + +AE +A+S+F + + + P+ T VL ACS + + G+ V
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLFYRLREF-DISPDHYTCSFVLKACSRLLDVRNGKIV 135
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI-------------- 110
H Y+ + L + + N ++++Y CG++G+A +VF+ + +D+I
Sbjct: 136 HGYVE-KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGD 194
Query: 111 -----------------SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
SW+++I G A G ++A+ LF M G+ P++VT +A++ A
Sbjct: 195 AEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVA 254
Query: 154 CSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
C+ G LV I + + YE + ++DMY + G LE+A M E
Sbjct: 255 CADMGNLVLGRRIHDFSNRSGYE--KNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTV 311
Query: 213 SVWGALLNACRIHRNDEMFDPIRQELVN 240
W A++ H E + +++N
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMIN 339
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 191/294 (64%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VV+WT +I G+ + G EEA+ +F EM+ +PNE T V+VL ACS ++AL
Sbjct: 310 MSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ +H IS V+++V +A+INMY KCG++ +A ++F+ + ++D++SW+ +I+
Sbjct: 370 GQQIHQIISKTVYQEVADVV-SALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G G +A+ LF M G PD+VT+IAL+SACSH GLVD+GL LF+ + I
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ H+ C+VD++GRAG L+EA FI+ + ++ SVW ALL C +H + ++ ++L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + GT+ ++SN +A +W +A +R +++ GLKK+ GCSWIEV ++
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 119/262 (45%), Gaps = 56/262 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM------------------EKTKEAEP-- 40
MP ++V+SW TMI GYA +G+ ++A+ +F++M + EA+
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELF 214
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG------------------- 81
N +V+S + ++ LS + + V N+V
Sbjct: 215 NRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFK 274
Query: 82 -------------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
N +I +++ G + A+ F ++ K++++W+ VISG +G +A
Sbjct: 275 LFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQDGRSEEA 334
Query: 129 LQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQTQHYACV 186
L++FS M N V P++ TF++++ ACS + +G + + +S TVY+ V + +
Sbjct: 335 LKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV--VSAL 392
Query: 187 VDMYGRAGLLEEAEAFIREMPI 208
++MY + G LE A + I
Sbjct: 393 INMYSKCGELELARKIFDDGSI 414
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 21/220 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSWT +I GY + G EEA ++F + K NV++ + +S
Sbjct: 92 MPDRDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIK----------NVVTWTALVSGYVR 141
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + V N++ N +I Y + G + A+ +F + ++++SW+TVI+
Sbjct: 142 WNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAF 201
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+A +LF+ M V +++ +++ S G +D +LF M V
Sbjct: 202 MQRRRVDEAQELFNRMPERDV----ISWTTMVAGLSKNGRIDDARLLFDKMP-----VRN 252
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ ++ Y + L+EA +MP E E S W ++
Sbjct: 253 VVSWNTMIIGYAQNMRLDEAFKLFEQMP-ERELSSWNTMI 291
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 56 SALSFGQYVHSYISTRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
S S Q V S D S ++ V N +I K G +G A QVF + +D++SW+
Sbjct: 42 SQFSTCQVVPKISSPVRDFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWT 101
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
VI+G G +A LF N + VT+ AL+S +++ LF AM
Sbjct: 102 AVITGYIKCGMIEEAKTLFDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-- 156
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEM 230
V + +++ Y R G +++A +MP W +V A + R+ E+
Sbjct: 157 ---VKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQEL 213
Query: 231 FD 232
F+
Sbjct: 214 FN 215
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY EA+ +F+EM+ + +E T+V+V++AC+ + AL
Sbjct: 215 MPERDTVSWTAMIDGYVWAARFREALEMFREMQYSN-VSADEFTMVSVITACAQLGALEM 273
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V Y+S R + + VGNA+I+MY KCG + A+ VF + ++D +W+ +I GLA
Sbjct: 274 GEWVRVYMS-RQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLA 332
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +A+++F MI PD+VTFI +++AC+H GLVD+G F +M Y I P
Sbjct: 333 VNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNV 392
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C++D+ GRAG + EA I +MP+ ++WG LL ACR+H N E+ + + + L+
Sbjct: 393 VHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE 452
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN +A +RWED ++R I G+KK+ GCS IE++
Sbjct: 453 LDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMD 501
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 42/248 (16%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS-ISALSFGQYVH 65
V+W +I G+ G E+ F +M + A P T V+VLSAC + G VH
Sbjct: 88 VAWNALISGHNRGGRFGESCGSFVDMARAGAA-PTPVTYVSVLSACGKGTRDVLLGMQVH 146
Query: 66 SYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ DL V N A+++MY +C D+G A +VF+ + + ++SW++++SGLA
Sbjct: 147 GRVVGSGVLPDLRVEN----ALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARL 202
Query: 123 GC-------------------------------GRQALQLFSLMIINGVFPDDVTFIALI 151
G R+AL++F M + V D+ T +++I
Sbjct: 203 GQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVI 262
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+ G ++ G + MS I ++DMY + G +E A + M +
Sbjct: 263 TACAQLGALEMGEWVRVYMSR-QGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDK 321
Query: 212 WSVWGALL 219
++ W A++
Sbjct: 322 FT-WTAII 328
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV W MIGG + ++A+++FQEM+ T +P+E T+++ LSACS + AL
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ-TSNTKPDEITMIHCLSACSQLGALDV 407
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI +Y LS++ +G ++++MY KCG++ A+ VF+ + ++ ++++ +I GLA
Sbjct: 408 GIWIHRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F+ MI G+ PD++TFI L+SAC HGG++ G F M + + + PQ
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+ +VD+ GRAGLLEEA+ + MP+EA+ +VWGALL CR+H N E+ + ++L+
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLE 586
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+ + A+ WEDA + R + G++K GCS IEVN
Sbjct: 587 LDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 34/229 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD+VSW +I GY + G E+A+ V++ ME ++ +P++ T++ ++S+CS + L+ G
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLME-SEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + Y+ L ++ + NA+++M+ KCGD+ A ++F+ L + ++SW+T+ISG A
Sbjct: 277 KEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYAR 335
Query: 122 NGC-------------------------------GRQALQLFSLMIINGVFPDDVTFIAL 150
G G+ AL LF M + PD++T I
Sbjct: 336 CGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHC 395
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+SACS G +D G+ + + + Y + +VDMY + G + EA
Sbjct: 396 LSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEA 443
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNEATLVNVLSACSSISALSFGQ 62
++ SW I G++E +E+ ++++M + E+ P+ T + C+ + S G
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ ++ + L + + V NA I+M+ CGD+ A +VF+ +D++SW+ +I+G
Sbjct: 177 MILGHV-LKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST--VYEIVPQT 180
G +A+ ++ LM GV PDDVT I L+S+CS G +++G ++ + + +P
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 295
Query: 181 QHYACVVDMYGRAGLLEEAE 200
++DM+ + G + EA
Sbjct: 296 N---ALMDMFSKCGDIHEAR 312
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/286 (40%), Positives = 181/286 (63%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+ V+W TMI Y + G A+S+FQ+M+ ++ +P E T+V++LSAC+ + AL G++
Sbjct: 168 RNSVTWNTMISAYVQCGEFGTAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDMGEW 226
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI T+ L + ++GNA+I+MY KCG + AI VF+ L+ K++ W+++I GL MNG
Sbjct: 227 IHGYIRTKR-LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNG 285
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ F +M G+ PD VTF+ ++S CSH GL+ G F M VY + P +HY
Sbjct: 286 RGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHY 345
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAG L+EA IR MP++ V G+LL AC+IH++ ++ + + Q+L+
Sbjct: 346 GCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP 405
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A RW+D N R + + G+ K GCS IEVN
Sbjct: 406 CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVN 451
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 90/231 (38%), Gaps = 74/231 (32%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV+ MI ++ G+ EEA ++F M + ++CS
Sbjct: 71 MPRRDVVANNAMISALSKHGYVEEARNLFDNMTER--------------NSCS------- 109
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL- 119
N++I Y K GD+ A +F+ KD++SW+ +I G
Sbjct: 110 --------------------WNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYC 149
Query: 120 -----------------------------AMNGCGR--QALQLFSLMIINGVFPDDVTFI 148
A CG A+ +F M V P +VT +
Sbjct: 150 KSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMV 209
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+L+SAC+H G +D G + + T + A ++DMY + G LE A
Sbjct: 210 SLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNA-LIDMYCKCGALEAA 259
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++++ W ++I G G EEA++ F MEK + +P+ T V +LS CS LS
Sbjct: 266 LSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEK-EGIKPDGVTFVGILSGCSHSGLLSA 324
Query: 61 GQYVHSYISTRYDL 74
GQ S + Y L
Sbjct: 325 GQRYFSEMLGVYGL 338
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 184/293 (62%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++VSWT ++ GYA +G ++A+ F++ME+ +P++ T++++L++C+ L
Sbjct: 100 MPVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAG-LKPDDGTVISILASCAESGLLGL 158
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ I RY SV+ V NA+++MY KCG V A+ VFN ++ KD++SW+ ++ GL
Sbjct: 159 GKRVHTSIERIRYKCSVN--VSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGL 216
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +ALQLFS+M G PD VT +A++ AC H G VD+G+ F M Y IVP
Sbjct: 217 AMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPH 276
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GR G L+EA ++ MP+E +WG LL ACR+H + + + L
Sbjct: 277 IEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLF 336
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G ++L+SN FA A W +R +++ G++K +G S IEV+ +
Sbjct: 337 KLEPSDPGNYSLLSNIFASAGDWSSVANVRLQMKNFGIQKPSGASSIEVDDEV 389
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 30/248 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +MI G + G EA +F EM K+A L + A A F
Sbjct: 7 MDERDVVSWNSMIRGLLKVGELSEACKLFDEM-PMKDAVSWNTILDGYVKAGEMNKA--F 63
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + + R +S S +V Y K GD+ +A +F+ + K+++SW+ ++SG A
Sbjct: 64 GLF--ESMPERNVVSWSTMVSG-----YCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYA 116
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G + A++ F M G+ PDD T I+++++C+ GL+ G K + T E +
Sbjct: 117 VKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLG----KRVHTSIERI--- 169
Query: 181 QHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE---- 229
Y C +VDMY + G ++ A + M + + W +L +H + E
Sbjct: 170 -RYKCSVNVSNALVDMYAKCGQVDRALSVFNGMS-KKDLVSWNCMLQGLAMHGHGEKALQ 227
Query: 230 MFDPIRQE 237
+F +RQE
Sbjct: 228 LFSIMRQE 235
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+++F ++ +D++SW+++I GL G +A +LF M + D V++ ++
Sbjct: 1 MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYVKA 56
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWS 213
G +++ LF++M P+ ++ +V Y +AG +E A MP++ W+
Sbjct: 57 GEMNKAFGLFESM-------PERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWT 109
Query: 214 V 214
+
Sbjct: 110 I 110
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 189/290 (65%), Gaps = 5/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW+ MI Y++ EEAV +F+EM +P +ATLV+VLSAC+ + L
Sbjct: 337 MPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDL 395
Query: 61 GQYVHS--YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++++ +S + L+V+ +GNA+I+M+ KCGDVG A ++F+ +A ++++SW+T+I
Sbjct: 396 GRWIYENYIVSNKIGLTVN--LGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMA 453
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A++G +A++LF + + PD +TF+ L+++CSH GLV +G FK M Y I P
Sbjct: 454 HAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEP 513
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HYAC++D+ G+ GLLEEA R MP+EA+ + WGALLNACR+H N E+ + +L
Sbjct: 514 RVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKL 573
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
V G + LMS +A ++W+ +R +R G+KK GCS IEV
Sbjct: 574 VELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEV 623
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 39/273 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWTT++ GYA G +EA +F M PN TLV +SA + L+F
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263
Query: 61 GQYVHSYI-------STRYDLSVSNLVGN-----------------------AVINMYVK 90
G +H Y+ S D ++ ++ G +++N Y K
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CGD+ A Q+F + ++++SWS +I+ + +A+ LF MI GV P D T +++
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SAC+ G +D G +++ +I ++DM+ + G + EA EM A
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEM---A 440
Query: 211 EWSV--WGALLNACRIHRNDE----MFDPIRQE 237
E +V W ++ A +H E +F+ ++ E
Sbjct: 441 ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGE 473
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM- 135
S LVGNA+++ Y + A +VF+ + +D++SW+T++ G A G +A +LF M
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
++ G+ P+ VT +A +SA GL+ G++L K + T + +VDM+G+ G
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYV-TEGGVARSVNLDNALVDMFGKCGC 295
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNA 221
+ A M ++ +S W +++NA
Sbjct: 296 VRYAREVFDGMEVKDVYS-WTSMVNA 320
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ +VVSW MI GY++ G E A+ +F +M+ + +PN T VL AC++++ L
Sbjct: 348 MPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMV-DMKPNTETFAIVLPACAALAVLEQ 406
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H + R LVGN ++ MY KCG + A +VF+ + +D S S +I G A
Sbjct: 407 GNEAHEVV-IRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYA 465
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGC +++L+LF M G+ PD VTF+ ++SAC H GLVD+G F M+ Y I P
Sbjct: 466 INGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAM 525
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG +EA I +MPI+ + +WG+LL+ACR H N ++ + + Q L+
Sbjct: 526 EHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIA 585
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A A RW+D +R+ ++ +KKK GCSWI + +
Sbjct: 586 LNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQV 637
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 119/245 (48%), Gaps = 24/245 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW MI GY + G E+A+ +FQE+ K N T++ + C
Sbjct: 224 MPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWN--TMMAGYAQCGD------ 275
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V + + + NLV N +I YV+ G V A ++F ++ +++ISW+ VISG
Sbjct: 276 ---VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGF 332
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG +AL+LF M V V++ A+I+ S G + L LF M V ++ P
Sbjct: 333 AQNGQVEEALKLFKTMPECNV----VSWNAMIAGYSQNGQAENALKLFGQMQMV-DMKPN 387
Query: 180 TQHYACVVDMYGRAGLLEEA----EAFIR---EMPIEAEWSVWGALLNACRIHRNDEMFD 232
T+ +A V+ +LE+ E IR + + ++ G I ++FD
Sbjct: 388 TETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD 447
Query: 233 PIRQE 237
+RQ+
Sbjct: 448 RMRQQ 452
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 36/245 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSWT MI YA +EA+ F EM+ +PN T ++L AC+ + L
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVG-IQPNHFTFASILPACTDLEVL-- 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ + ++ +V VGN +++MY K G + A ++F+ + +D++SW+ +I+G
Sbjct: 183 GEFHDEIVKGGFESNV--FVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYV 240
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS--------- 171
NG AL+LF + D +T+ +++ + G V+ + LF+ M
Sbjct: 241 QNGLIEDALKLFQEIPKR----DVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNT 296
Query: 172 ---------------TVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+++I+P+ + V+ + + G +EEA + MP E
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMP-ECNVVS 355
Query: 215 WGALL 219
W A++
Sbjct: 356 WNAMI 360
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PKRDV++W TM+ GYA+ G E AV +F++M + N++S + I+
Sbjct: 255 IPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQ-----------NLVSWNTMIAGYVQ 303
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V + N++ NAVI+ + + G V A+++F + +++SW+ +I+G
Sbjct: 304 NGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGY 363
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG AL+LF M + + P+ TF ++ AC+ +++QG + +E+V +
Sbjct: 364 SQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG-------NEAHEVVIR 416
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWS----VWGALLNAC 222
+ + V V MY + G +E+A M + S + G +N C
Sbjct: 417 SGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGC 469
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 111/217 (51%), Gaps = 24/217 (11%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY-IST 70
++ ++G EA+ + Q+M + P+ +T ++L C + +L + +H++ I T
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENG-IWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQT 93
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
+++ +L GN ++++YVK G + A +VF+ + K+++SW+ +I+ A + G++AL
Sbjct: 94 QFECQDISL-GNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152
Query: 131 LFSLMIINGVFPDDVTFIALISACS--------HGGLVDQGLILFKAMSTVYEIVPQTQH 182
F M G+ P+ TF +++ AC+ H +V G F++ V
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGG---FESNVFVGN------- 202
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G +E A +MP + + W A++
Sbjct: 203 --GLVDMYAKRGCIEFARELFDKMP-QRDVVSWNAMI 236
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 180/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSWT MI GY + + +FQEM + P T+V VLS C+ I A
Sbjct: 446 MPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDL 505
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH Y++ T DL V+ V NA+++MY K G + +A+++F + +D+ SW+T+ISGL
Sbjct: 506 GSSVHGYVNKTNLDLDVT--VNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGL 563
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G G AL+ FS M +G P++VT ++++SACSH GLV +G LF+ M + I P+
Sbjct: 564 ALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPK 623
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
QHY C+VD+ GRAGLL EA+ I MPI+ + +W +LL+AC +H N + + + ++
Sbjct: 624 IQHYGCMVDLLGRAGLLREAKELIEHMPIKPDSVIWRSLLSACLVHGNLALAEMAGKMII 683
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+ N + A RWEDA K R +R +KKK GCSW+EVN
Sbjct: 684 ELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVN 733
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 115/259 (44%), Gaps = 48/259 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSWT +I Y +A S+F + + P+ +V +SAC LS G+ V
Sbjct: 318 DIVSWTCLISLYLHTSQPCKAFSIFSHLFHSG-LRPDSFCVVGAVSACGHRKDLSNGRIV 376
Query: 65 HSYISTRYDLSVSNLVGNAVINMY-------------------------------VKCGD 93
H + R++L +VGNA+I+MY +KC D
Sbjct: 377 HGMV-FRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCND 435
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALIS 152
+ A ++F+ + ++ +SW+ +I+G L+LF M G +P +T +A++S
Sbjct: 436 IEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLS 495
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQH------YACVVDMYGRAGLLEEAEAFIREM 206
C+ G D G S+V+ V +T ++DMY ++G L A +EM
Sbjct: 496 GCADIGAFDLG-------SSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEM 548
Query: 207 PIEAEWSVWGALLNACRIH 225
P +S W +++ +H
Sbjct: 549 PKRDVFS-WTTMISGLALH 566
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 6/187 (3%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL-SVSNLVGNAVINMYVKCGDV 94
+ A N T +L C S+ L + +H T L S + ++N Y + G
Sbjct: 248 RNAHMNTQTFYFLLQKCGSLEKL---KQIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSP 304
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A +VFN + D++SW+ +IS +A +FS + +G+ PD + +SAC
Sbjct: 305 VDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSAC 364
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
H + G I+ M +E+ ++DMY R+G +E A + + M I+ + S
Sbjct: 365 GHRKDLSNGRIV-HGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIK-DVSS 422
Query: 215 WGALLNA 221
W +LLN
Sbjct: 423 WTSLLNG 429
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 188/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK+D+V+ T MI GYAE G E+ +F +M + P++ +V +++AC+ + A++
Sbjct: 162 MPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFV-PDKVAMVTIVNACAKLGAMNK 220
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH Y+ + RY L V +G A+I+MY KCG + + ++F+ + K++ISWS +I
Sbjct: 221 ARLVHDYVCARRYSLDVE--LGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAY 278
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G GR+AL+LF +M+ +G+ P+ +TFI+L+ ACSH GLVD GL LF MS Y + P
Sbjct: 279 GYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPD 338
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG L++A I M +E + +W A L ACRIHR ++ + + L+
Sbjct: 339 VKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLL 398
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + G + L+SN +A A RW+D KIR+ + + LKK G +WIEV+ I+
Sbjct: 399 SLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIY 452
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 118/226 (52%), Gaps = 6/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW+ MIGG+ + G E F+E+ + ++P+ +L V+ AC L
Sbjct: 61 MEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAG-SKPDNFSLPFVIKACRDTMGLIM 119
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS + + L + N V + +++MY KCG + A Q+F+ + KD+++ + +I+G A
Sbjct: 120 GRLIHSTV-LKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQ 179
G ++ LF M +G PD V + +++AC+ G +++ ++ + + Y +
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--D 236
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G ++ + M + S W A++ A H
Sbjct: 237 VELGTAMIDMYAKCGSIDSSREIFDRMEQKNVIS-WSAMIGAYGYH 281
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
++ L C +I + + VH+ ++T +DL +V N ++ M K D+ A +F
Sbjct: 6 FISTLFKCRNIFQI---KQVHAQVTTTGIIHDL----IVANKLLYMCAKHKDLVTAHLLF 58
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
N + +D +SWS +I G NG + Q F +I G PD+ + +I AC
Sbjct: 59 NKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRD----T 114
Query: 162 QGLILFKAM-STVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMP 207
GLI+ + + STV + ++ C +VDMY + G+++ A+ MP
Sbjct: 115 MGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 188/288 (65%), Gaps = 5/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +SW+ MI GY + G EA+ +F +M+K K P + L +VLSAC+++ AL
Sbjct: 263 MKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALDQ 321
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y + R + + ++G ++++MY KCG + +A +VF ++ K++ SW+ +I GLA
Sbjct: 322 GRWIHTY-AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLA 380
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ LFS M ++P+++TF+ +++AC+HGGLV +GL +F +M Y + PQ
Sbjct: 381 MHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQI 437
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EAE + +P E +VWGALL ACR H N E+ + + + L+
Sbjct: 438 EHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLE 497
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A A RWE+ ++R ++ G+K G S I++
Sbjct: 498 LEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDL 545
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 99/232 (42%), Gaps = 49/232 (21%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V W MI GY G E A +F+ M P+
Sbjct: 204 DAVCWNAMIDGYLRFGEVEAARELFEGM-------PDR---------------------- 234
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
S IST NA+I+ + +CG V +A + F+ + +D ISWS +I G GC
Sbjct: 235 -SMIST----------WNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGC 283
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF---KAMSTVYEIVPQTQ 181
+AL++F M + P +++SAC++ G +DQG + K S + V T
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTS 343
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+VDMY + G ++ A +M E S W A++ +H R ++ D
Sbjct: 344 ----LVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAID 390
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 8/164 (4%)
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L G SYI+ S +N+ N ++ +++VF+ + ++ W+ +I
Sbjct: 59 LRTGHLQDSYIAGSLVKSYANVSTNRYLSFES-------SLRVFDFVRKPNVFLWNCMIK 111
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
N +A+ L+ M++ P+ T+ A++ ACS G+V +G + A + +
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEG-VQVHAHLVKHGLG 170
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + MY G L EA + + E + W A+++
Sbjct: 171 GDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDG 214
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 186/303 (61%), Gaps = 13/303 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE----------PNEATLVNVLS 50
MP R+V SW +IGGY G +EA+ F+ M E E PN+ T+V VL+
Sbjct: 276 MPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLT 335
Query: 51 ACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM 109
ACS + L G++VH Y S Y ++ VGNA+I+MY KCG + A+ VF+ L KD+
Sbjct: 336 ACSRLGDLEMGKWVHVYAESIGYKGNL--FVGNALIDMYAKCGVIEKALDVFDGLDVKDI 393
Query: 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA 169
I+W+T+I+GLAM+G AL LF M G PD VTF+ ++SAC+H GLV GL+ F++
Sbjct: 394 ITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQS 453
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
M Y IVPQ +HY C+VD+ GRAGL+++A +R+MP+E + +W ALL ACR+++N E
Sbjct: 454 MVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVE 513
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
M + Q L+ + + G F ++SN + R +D +++ +R G +K GCS I N
Sbjct: 514 MAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCN 573
Query: 290 PSI 292
S+
Sbjct: 574 DSM 576
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 102/238 (42%), Gaps = 60/238 (25%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVV W ++ GY E G A +F M P+ +V+S
Sbjct: 215 PQRDVVLWNVVVSGYIELGDMVAARELFDRM-------PDR----DVMS----------- 252
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V++ Y G+V +++F + +++ SW+ +I G
Sbjct: 253 -------------------WNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVR 293
Query: 122 NGCGRQALQLFSLMII----------NG-VFPDDVTFIALISACSHGGLVDQGLILFKAM 170
NG ++AL+ F M++ +G V P+D T +A+++ACS G ++ G K +
Sbjct: 294 NGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG----KWV 349
Query: 171 STVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
E + + ++DMY + G++E+A + ++ + W ++N +H
Sbjct: 350 HVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVK-DIITWNTIINGLAMH 406
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 100/239 (41%), Gaps = 48/239 (20%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
+W M GYA+ + V +F M + A PN T V+ +C++ +A G+ VH
Sbjct: 87 TWNAMFRGYAQANCHLDVVVLFARMHRAG-ASPNCFTFPMVVKSCATANAAKEGEEVHCV 145
Query: 68 ISTRYDLSVSNLVGNAVINMY---------------------------------VKCGDV 94
++ R + VG A+I+MY V C D+
Sbjct: 146 VAKR-GFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDM 204
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD-DV-TFIALIS 152
A ++F++ +D++ W+ V+SG G A +LF M PD DV ++ ++S
Sbjct: 205 VSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRM------PDRDVMSWNTVLS 258
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+ G V+ + LF+ M V + ++ Y R GL +EA + M + E
Sbjct: 259 GYATNGEVESFVKLFEEMP-----VRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVE 312
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 34/202 (16%)
Query: 12 MIGGYAERG--FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
+I Y+ RG F +A VF EM NV + + ++A +S
Sbjct: 161 LIHMYSLRGGVFVADAYKVFAEMRDK-----------NVFAWTAIVAA---HVACRDMVS 206
Query: 70 TR--YDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
R +DL+ ++ N V++ Y++ GD+ A ++F+ + +D++SW+TV+SG A NG
Sbjct: 207 ARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEV 266
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---------- 175
++LF M + V+ ++ LI GL + L FK M + E
Sbjct: 267 ESFVKLFEEMPVRNVY----SWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGV 322
Query: 176 IVPQTQHYACVVDMYGRAGLLE 197
+VP V+ R G LE
Sbjct: 323 VVPNDYTVVAVLTACSRLGDLE 344
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
E +++L C + L + + I T + L ++ V + I + G + A +VF
Sbjct: 22 EDKFISLLRTCGTCVRL---HQIQAQIVT-HGLEGNDYVTPSFITACARLGGIRRARRVF 77
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ A + +W+ + G A C + LF+ M G P+ TF ++ +C+
Sbjct: 78 DKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAK 137
Query: 162 QG 163
+G
Sbjct: 138 EG 139
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW ++I GY + G EA++ F M++ E +P++ T+V L A ++++AL+
Sbjct: 414 MQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGE-KPDQTTIVCCLRASANLAALNV 472
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H +++ + V NA++ MY K G V A VF + KD++SW+++I+G A
Sbjct: 473 GVQLH-HLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYA 531
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGCG++A++LF +M + G+ PD+VTF L+SAC+HGG VDQGL LFK+M+ Y I PQ+
Sbjct: 532 LNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQS 591
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACV+++ GR G LEEA ++ M + +WGALL ACRIH N E+ + L+
Sbjct: 592 EHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLA 651
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN A A RW+ ++R ++ +K+ GCSWIE++ +
Sbjct: 652 LEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQL 703
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 134/300 (44%), Gaps = 47/300 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW +MI GY E+A +F M K + TL +++ + I L
Sbjct: 72 MPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR---DIYSWTL--MITCYTRIGELEK 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + + D + NA+I Y K A ++F+ + K+++SW++++SG
Sbjct: 127 ARELFNLLPDKQD----TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYT 182
Query: 121 MNGCGRQALQLFSLM----------IINGVF-----------------PDDVTFIALISA 153
NG + LQ F M +++G P+ V+++ ++S
Sbjct: 183 KNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSG 242
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
+H G + + LF M T + ++ Y R +++A EMP E +
Sbjct: 243 FAHYGRMTEARNLFNEMPT-----KNLVSWNAMIGAYVRENQIDDAYKLFMEMP-EKDSV 296
Query: 214 VWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272
W A++N R+ + + + + L+ K ++ T M N + + R ++AN+I +I
Sbjct: 297 SWTAMINGYVRVGKLLQAREIL--NLMPYKNIAAQT--AMINGYLQSGRMDEANEIFSQI 352
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSWT MI GY G +A + M N A +++ +
Sbjct: 290 MPEKDSVSWTAMINGYVRVGKLLQAREILNLM-----PYKNIAAQTAMINGYLQSGRMDE 344
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ S IS R ++ N++I Y CG A+++F + KDM+SW+T+I+ A
Sbjct: 345 ANEIFSQISVR-----DSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL++F+ M V V++ +LI+ GL + L F M E QT
Sbjct: 400 QAGQMDKALEMFNEMQERNV----VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQT 455
Query: 181 QHYACV 186
C+
Sbjct: 456 TIVCCL 461
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD V W +MI GYA G +EA+ +FQEM C + +
Sbjct: 355 RDSVCWNSMITGYAHCGRTDEALRLFQEM------------------VCKDMVSW----- 391
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
N +I Y + G + A+++FN + ++++SW+++I+G NG
Sbjct: 392 ------------------NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQH 182
+AL F LM G PD T + + A ++ ++ G+ L + T + ++
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIE--AEWS--VWGALLNAC 222
++ MY ++G + EAE E+ + W+ + G LN C
Sbjct: 494 --AILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGC 535
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW M+ GY G + A F+++ PN + V +LS + ++
Sbjct: 197 MGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI-----PTPNVVSWVTMLSGFAHYGRMTE 251
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + + T+ NLV NA+I YV+ + A ++F + KD +SW+ +I+G
Sbjct: 252 ARNLFNEMPTK------NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGY 305
Query: 120 AMNGCGRQALQLFSLM----------IINGVFP-----------------DDVTFIALIS 152
G QA ++ +LM +ING D V + ++I+
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+H G D+ L LF+ M + + ++ Y +AG +++A EM
Sbjct: 366 GYAHCGRTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
IS L + ++ ++ N+V N++I+ Y K G + A ++F+++ ++++SW+
Sbjct: 22 ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
++I+G N A +LF M ++ ++ +I+ + G +++ LF
Sbjct: 82 SMIAGYLHNELVEDAARLFDRMFKRDIY----SWTLMITCYTRIGELEKARELFN----- 132
Query: 174 YEIVPQTQHYAC---VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++P Q C ++ Y + L EA+ EM ++ S W ++L+
Sbjct: 133 --LLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVS-WNSILSG 180
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I+ + G + A+ VF + +++++++++IS A NG A +LF LM +
Sbjct: 19 NLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNL- 77
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ ++I+ H LV+ LF M +I T C Y R G LE+A
Sbjct: 78 ---VSWNSMIAGYLHNELVEDAARLFDRMFK-RDIYSWTLMITC----YTRIGELEKARE 129
Query: 202 FIREMP 207
+P
Sbjct: 130 LFNLLP 135
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 183/288 (63%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SWT+MI GY+ EAV +FQEM +P+E T+ LSAC+ + +L
Sbjct: 306 MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM-MVSMVKPDEITVATALSACAHLGSLDA 364
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++D+ VGN++I+MY KCG V A+QVFN + +D +SW+++ISGLA
Sbjct: 365 GEAVHDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLA 423
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL +F M+ G+ P TF+ ++ AC+H GLVD+G+ FK+M Y + P+
Sbjct: 424 VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEM 483
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G L+ A FI++MPI + +W LL+AC++H N + + + ++L+
Sbjct: 484 KHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLV 543
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L S+T+AG+DRW+D KIR + L+K S IEV
Sbjct: 544 LDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 591
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 129/272 (47%), Gaps = 39/272 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW ++I GY + ++ + +F+EM+ + T++ +SA +S
Sbjct: 174 MLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAI-NVRADSVTMMKAISATCFLSEWEM 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G Y+ YI + + V +GN +I+MY + G + A +VF + K+++SW+ +I G A
Sbjct: 233 GDYLVKYID-EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 291
Query: 121 MNG----------------------------CGRQ---ALQLFSLMIINGVFPDDVTFIA 149
G +Q A++LF M+++ V PD++T
Sbjct: 292 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 351
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+SAC+H G +D G + + ++I ++DMY + G++E+A +M
Sbjct: 352 ALSACAHLGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR 410
Query: 210 AEWSVWGALLNACRIHRNDE----MFDPIRQE 237
S W ++++ ++ E +FD + +E
Sbjct: 411 DSVS-WTSIISGLAVNGFAESALNVFDQMLKE 441
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 4/211 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI G ++ +A+ + M K + + T + + +C+ +S + GQ V +
Sbjct: 81 WNHMIHGLSKSDRPNDAIHFYNTMY-YKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH- 138
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
S + V NA+I+MYV G++ +A +VF+ + +D++SW+++I G ++
Sbjct: 139 SMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 198
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L LF M V D VT + ISA + G L K + + +V ++D
Sbjct: 199 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDE-HGVVVDLYLGNTLID 257
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
MYGR G+++ A +M E W A++
Sbjct: 258 MYGRRGMIDFAGRVFYQMK-EKNIVSWNAMI 287
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 6/159 (3%)
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VFN + ++ W+ +I GL+ + A+ ++ M G+ +TFI L +C+
Sbjct: 69 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 128
Query: 160 VDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
V QG ++ +M +E + ++ MY G L A+ M +E + W ++
Sbjct: 129 VRQGQMVRVHSMKLGFESYLFVSN--ALIHMYVCFGELAMAQKVFDGM-LERDVVSWNSI 185
Query: 219 L-NACRIHRNDEMFDPIRQ-ELVNKKGVSVGTFALMSNT 255
+ + +R ++ D R+ + +N + SV +S T
Sbjct: 186 ICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISAT 224
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 183/288 (63%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SWT+MI GY+ EAV +FQEM +P+E T+ LSAC+ + +L
Sbjct: 265 MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEM-MVSMVKPDEITVATALSACAHLGSLDA 323
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++D+ VGN++I+MY KCG V A+QVFN + +D +SW+++ISGLA
Sbjct: 324 GEAVHDYIR-KHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLA 382
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG AL +F M+ G+ P TF+ ++ AC+H GLVD+G+ FK+M Y + P+
Sbjct: 383 VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEM 442
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ R+G L+ A FI++MPI + +W LL+AC++H N + + + ++L+
Sbjct: 443 KHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLV 502
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L S+T+AG+DRW+D KIR + L+K S IEV
Sbjct: 503 LDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEV 550
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 129/272 (47%), Gaps = 39/272 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW ++I GY + ++ + +F+EM+ + T++ +SA +S
Sbjct: 133 MLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAI-NVRADSVTMMKAISATCFLSEWEM 191
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G Y+ YI + + V +GN +I+MY + G + A +VF + K+++SW+ +I G A
Sbjct: 192 GDYLVKYID-EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 250
Query: 121 MNG----------------------------CGRQ---ALQLFSLMIINGVFPDDVTFIA 149
G +Q A++LF M+++ V PD++T
Sbjct: 251 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 310
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+SAC+H G +D G + + ++I ++DMY + G++E+A +M
Sbjct: 311 ALSACAHLGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTR 369
Query: 210 AEWSVWGALLNACRIHRNDE----MFDPIRQE 237
S W ++++ ++ E +FD + +E
Sbjct: 370 DSVS-WTSIISGLAVNGFAESALNVFDQMLKE 400
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 4/211 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI G ++ +A+ + M K + + T + + +C+ +S + GQ V +
Sbjct: 40 WNHMIHGLSKSDRPNDAIHFYNTMY-YKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVH- 97
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
S + + V NA+I+MYV G++ +A +VF+ + +D++SW+++I G ++
Sbjct: 98 SMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKV 157
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L LF M V D VT + ISA + G L K + + +V ++D
Sbjct: 158 LDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDE-HGVVVDLYLGNTLID 216
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
MYGR G+++ A +M E W A++
Sbjct: 217 MYGRRGMIDFAGRVFYQMK-EKNIVSWNAMI 246
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 7/181 (3%)
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VFN + ++ W+ +I GL+ + A+ ++ M G+ +TFI L +C+
Sbjct: 28 VFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSD 87
Query: 160 VDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
V QG ++ +M +E + ++ MY G L A+ M +E + W ++
Sbjct: 88 VRQGQMVRVHSMKLGFESXSFVSN--ALIHMYVCFGELAMAQKVFDGM-LERDVVSWNSI 144
Query: 219 L-NACRIHRNDEMFDPIRQ-ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
+ + +R ++ D R+ + +N + SV +S T WE + + I G
Sbjct: 145 ICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISAT-CFLSEWEMGDYLVKYIDEHG 203
Query: 277 L 277
+
Sbjct: 204 V 204
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWTT+IG YA+ EAV VF+ M+ + EP+ L++VLSAC + A+
Sbjct: 161 MPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAVDL 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + NA+I+MYVK G V A++VF + K +++W+TVI+G A
Sbjct: 221 GEWVHRFV-VRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFA 279
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A+++F M + V P+DVTF+A++SACSH GL D G FK M + Y I +
Sbjct: 280 LHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWYFKIMVSQYRIKQRV 339
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L EA+ +++MP +A ++WGALL A R H + E+ L+
Sbjct: 340 EHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLAAARTHGDAELGKQALLHLIE 399
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A +RW+D +K+R +++ GL+ G S IEV+
Sbjct: 400 LEPHNSGNYILLSNIYAEQERWDDVSKLRKQMKDRGLRNVPGASSIEVD 448
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 78/185 (42%), Gaps = 36/185 (19%)
Query: 49 LSACSSISAL--SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
L+A + I L + G +HS I R L+ V ++I Y CG V A VF+
Sbjct: 74 LNAAAKIPHLRGTLGPQLHSVI-VRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTD 132
Query: 107 KDMISWSTVISGLAMNG---CGR----------------------------QALQLFSLM 135
KD+ W+ +ISG +G C R +A+++F M
Sbjct: 133 KDIFCWNVMISGYVKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRM 192
Query: 136 II-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
+ G+ PD V ++++SAC G VD G + + + Q ++DMY + G
Sbjct: 193 QVEEGIEPDGVALLSVLSACGDLGAVDLGEWVHR-FVVRRGLCWQIPLMNAIIDMYVKLG 251
Query: 195 LLEEA 199
+ +A
Sbjct: 252 CVRKA 256
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 189/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+TMI GYA+ G E++ +F+ M+ T +PNE TLV VLSAC+ + +
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS-CKPNEVTLVGVLSACAQLGSDEL 335
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S++ ++ +L +++ +G+A+I+MY KCG VG A VFN + +K +I+W++++ GLA
Sbjct: 336 GGQIGSHVESQ-NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLA 394
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG + A+ L+ M V P+++TF+AL++AC+H GLVDQG+ FK M T++ + PQ
Sbjct: 395 LNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQV 454
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ ++G L EA FI +M +E +W LL+ACR H + E+ +L+
Sbjct: 455 EHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLV 514
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A A W D +IRD +R ++K + SWIE++
Sbjct: 515 LEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELD 563
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R SW +MI YA G +EA+ +F+ M ++ A PN T+ + S C+ L
Sbjct: 177 MVRRTSASWNSMIACYAHGGEYQEALRLFRRM-LSEGARPNAITIATMFSICAKTGDLET 235
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ S I+ + DL + +V A++ MYVKC + A + F+ + +D+++WST+I+G A
Sbjct: 236 GKWARSLIAEQ-DLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYA 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + ++SAC+ G + G + + + + +P T
Sbjct: 294 QNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVES--QNLPLT 351
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY + G + A + M
Sbjct: 352 SYLGSALIDMYTKCGHVGRARSVFNRM 378
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
T+I + +E + F + + P + V+ +C+ ++A G+ VH +
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPL-VVKSCAILAASRQGKQVHCHAIV 113
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
R L V A+++ Y K GD+ A++VF+ + KD I + +I+G + +G +A +
Sbjct: 114 RGLLG-DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARR 172
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
LF M+ ++ ++I+ +HGG + L LF+ M
Sbjct: 173 LFDGMVRRT----SASWNSMIACYAHGGEYQEALRLFRRM 208
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y K GDV A ++F+ + + SW+++I+ A G ++AL+LF M+ G
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214
Query: 142 PDDVTFIALISACSHGGLVDQG 163
P+ +T + S C+ G ++ G
Sbjct: 215 PNAITIATMFSICAKTGDLETG 236
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 189/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+TMI GYA+ G E++ +F+ M+ T +PNE TLV VLSAC+ + +
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATS-CKPNEVTLVGVLSACAQLGSDEL 335
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S++ ++ +L +++ +G+A+I+MY KCG VG A VFN + +K +I+W++++ GLA
Sbjct: 336 GGQIGSHVESQ-NLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLA 394
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG + A+ L+ M V P+++TF+AL++AC+H GLVDQG+ FK M T++ + PQ
Sbjct: 395 LNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQV 454
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ ++G L EA FI +M +E +W LL+ACR H + E+ +L+
Sbjct: 455 EHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLV 514
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A A W D +IRD +R ++K + SWIE++
Sbjct: 515 LEPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELD 563
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R SW +MI YA G +EA+ +F+ M ++ A PN T+ + S C+ L
Sbjct: 177 MVRRTSASWNSMIACYAHGGEYQEALRLFRRM-LSEGARPNAITIATMFSICAKTGDLET 235
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ S I+ + DL + +V A++ MYVKC + A + F+ + +D+++WST+I+G A
Sbjct: 236 GKWARSLIAEQ-DLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYA 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + ++SAC+ G + G + + + + +P T
Sbjct: 294 QNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVES--QNLPLT 351
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY + G + A + M
Sbjct: 352 SYLGSALIDMYTKCGHVGRARSVFNRM 378
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 78/160 (48%), Gaps = 6/160 (3%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
T+I + +E + F + + P + V+ +C+ ++A G+ VH +
Sbjct: 55 TLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPL-VVKSCAILAASRQGKQVHCHAIV 113
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
R L V A+++ Y K GD+ A++VF+ + KD I + +I+G + +G +A +
Sbjct: 114 RGLLG-DIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYSKSGDVVKARR 172
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
LF M+ ++ ++I+ +HGG + L LF+ M
Sbjct: 173 LFDGMVRRT----SASWNSMIACYAHGGEYQEALRLFRRM 208
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y K GDV A ++F+ + + SW+++I+ A G ++AL+LF M+ G
Sbjct: 155 NCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGAR 214
Query: 142 PDDVTFIALISACSHGGLVDQG 163
P+ +T + S C+ G ++ G
Sbjct: 215 PNAITIATMFSICAKTGDLETG 236
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++VVSWTTM+ G+++ G E+A+ F M + + A PN+ T+V+ LSAC+ I AL
Sbjct: 267 MPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLE-EGARPNDYTIVSALSACAKIGALDA 325
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+Y+S ++ ++G A+++MY KCG++ A +VF+ K ++ WS +I G A
Sbjct: 326 GLRIHNYLSGN-GFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWA 384
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+ALQ F M G PD V F+A+++ACSH G V++GL F M Y I P
Sbjct: 385 IHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSM 444
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY VVDM GRAG L+EA FIR MPI ++ VWGAL ACR H+N EM + ++L+
Sbjct: 445 KHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQ 504
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G++ +SN +A RW+DA ++R +R G K G S+IEV+ +
Sbjct: 505 LEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKL 556
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 8/147 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++IN ++K GD+G A ++F + K+++SW+T+++G + NG +AL+ F M+ G
Sbjct: 245 NSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGAR 304
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMST---VYEIVPQTQHYACVVDMYGRAGLLEE 198
P+D T ++ +SAC+ G +D GL + +S +V T +VDMY + G +E
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGT----ALVDMYAKCGNIEH 360
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIH 225
AE E E +W ++ IH
Sbjct: 361 AEKVFHETK-EKGLLIWSVMIWGWAIH 386
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 181/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ V+WT MI GY + G +E+ ++ +EM E E N TL ++L+ACS L
Sbjct: 210 MPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMM 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y + ++ +VG A+++MY KCG + IA + F + ++++SW+ ++SGLA
Sbjct: 270 GRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLA 329
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G GR AL +F M PDDVTF +++SACSH GLVDQG F + +VY I P+
Sbjct: 330 MHGLGRAALDIFPQMFKEAK-PDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKV 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG LEEAE +REMPI V G+LL +C IH ++ + + QELV
Sbjct: 389 EHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQ 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN +A A + AN +R +++ G+KK G S I V +
Sbjct: 449 LDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQV 500
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 106/254 (41%), Gaps = 35/254 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V WTT++G + +EA+ +F EM + +P+E TLV + C+ + + G
Sbjct: 81 KDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG-VKPDEVTLVCLFGGCARLGDVVVGAQ 139
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + + L NAV++MY K G +G A +VF + + ++SW+ ++ G+ +
Sbjct: 140 GHGCM-VKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSE 198
Query: 124 CGRQALQLFSLM----------IINGVFPDD----------------------VTFIALI 151
R +F M +I G VT +++
Sbjct: 199 GVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSIL 258
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+ACS G + G + E +VDMY + G + A F ++MP
Sbjct: 259 TACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNV 318
Query: 212 WSVWGALLNACRIH 225
S W A+L+ +H
Sbjct: 319 VS-WNAMLSGLAMH 331
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 48 VLSACSSISALSFGQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-- 104
+L +C+ S+L G+ +H + I+T + + NA++ Y CG A +VF+ +
Sbjct: 19 LLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDEIPH 78
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
++KD + W+T++ + +AL +F M GV PD+VT + L C+ G V G
Sbjct: 79 SHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGA 138
Query: 165 ILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEA--EWSV 214
+ + ++ AC V+DMY ++GL+ EA EM ++ W+V
Sbjct: 139 ---QGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTV 189
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW ++I GY + G EA++ F M++ E +P++ T+V L A ++++AL+
Sbjct: 414 MQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGE-KPDQTTIVCCLRASANLAALNV 472
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H +++ + V NA++ MY K G V A VF + KD++SW+++I+G A
Sbjct: 473 GVQLH-HLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYA 531
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGCG++A++LF +M + G+ PD+VTF L+SAC+HGG VDQGL LFK+M+ Y I PQ+
Sbjct: 532 LNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQS 591
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACV+++ GR G LEEA ++ M + +WGALL ACRIH N E+ + L+
Sbjct: 592 EHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLA 651
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN A A RW+ ++R ++ +K+ GCSWIE++ +
Sbjct: 652 LEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQL 703
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 134/300 (44%), Gaps = 47/300 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW +MI GY E+A +F M K + TL +++ + I L
Sbjct: 72 MPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKR---DIYSWTL--MITCYTRIGELEK 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + + D + NA+I Y K A ++F+ + K+++SW++++SG
Sbjct: 127 ARELFNLLPDKQD----TVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYT 182
Query: 121 MNGCGRQALQLFSLM----------IINGVF-----------------PDDVTFIALISA 153
NG + LQ F M +++G P+ V+++ ++S
Sbjct: 183 KNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSG 242
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
+H G + + LF M T + ++ Y R +++A EMP E +
Sbjct: 243 FAHYGRMTEARNLFNEMPT-----KNLVSWNAMIGAYVRENQIDDAYKLFMEMP-EKDSV 296
Query: 214 VWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272
W A++N R+ + + + + L+ K ++ T M N + + R ++AN+I +I
Sbjct: 297 SWTAMINGYVRVGKLLQAREIL--NLMPYKNIAAQT--AMINGYLQSGRMDEANEIFSQI 352
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSWT MI GY G +A + M N A +++ +
Sbjct: 290 MPEKDSVSWTAMINGYVRVGKLLQAREILNLM-----PYKNIAAQTAMINGYLQSGRMDE 344
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ S IS R ++ N++I Y CG A+++F + KDM+SW+T+I+ A
Sbjct: 345 ANEIFSQISVR-----DSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYA 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL++F+ M V V++ +LI+ GL + L F M E QT
Sbjct: 400 QAGQMDKALEMFNEMQERNV----VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQT 455
Query: 181 QHYACV 186
C+
Sbjct: 456 TIVCCL 461
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 44/234 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW M+ GY G + A F+++ PN + V +LS + ++
Sbjct: 197 MGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI-----PTPNVVSWVTMLSGFAHYGRMTE 251
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + + T+ NLV NA+I YV+ + A ++F + KD +SW+ +I+G
Sbjct: 252 ARNLFNEMPTK------NLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGY 305
Query: 120 AMNGCGRQALQLFSLM----------IINGVFP-----------------DDVTFIALIS 152
G QA ++ +LM +ING D V + ++I+
Sbjct: 306 VRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMIT 365
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+H G D+ L LF+ M + + ++ Y +AG +++A EM
Sbjct: 366 GYAHCGRTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD V W +MI GYA G +EA+ +FQEM C + +
Sbjct: 355 RDSVCWNSMITGYAHCGRTDEALRLFQEM------------------VCKDMVSW----- 391
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
N +I Y + G + A+++FN + ++++SW+++I+G NG
Sbjct: 392 ------------------NTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNG 433
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQH 182
+AL F LM G PD T + + A ++ ++ G+ L + T + ++
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIE--AEWS--VWGALLNAC 222
++ MY ++G + EAE E+ + W+ + G LN C
Sbjct: 494 --AILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGC 535
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
IS L + ++ ++ N+V N++I+ Y K G + A ++F+++ ++++SW+
Sbjct: 22 ISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
++I+G N A +LF M ++ ++ +I+ + G +++ LF
Sbjct: 82 SMIAGYLHNELVEDAARLFDRMFKRDIY----SWTLMITCYTRIGELEKARELFN----- 132
Query: 174 YEIVPQTQHYAC---VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++P Q C ++ Y + L EA+ EM ++ S W ++L+
Sbjct: 133 --LLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVS-WNSILSG 180
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I+ + G + A+ VF + +++++++++IS A NG A +LF LM +
Sbjct: 19 NLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNL- 77
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ ++I+ H LV+ LF M +I T C Y R G LE+A
Sbjct: 78 ---VSWNSMIAGYLHNELVEDAARLFDRMFK-RDIYSWTLMITC----YTRIGELEKARE 129
Query: 202 FIREMP 207
+P
Sbjct: 130 LFNLLP 135
>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 183/294 (62%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK VVSW MI GY G EA+ +F EM K+ EP+ T +VL+ACS ++AL
Sbjct: 369 IPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY-VEPDAITFTSVLTACSQLAALEK 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + L + +V A+++MY KCG V A VF L +D++SW+++I+
Sbjct: 428 GEEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYG 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL+LF+ M+ + + PD VTF+A++SAC H GLVD+G F M VY I+P+
Sbjct: 487 SHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRV 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++D+ GRAG L EA +++ P I + + L +ACR+HRN ++ I + L+
Sbjct: 547 EHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLI 606
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+K T+ L+SN +A A +W++ +R +++ +GLKK GCSWIE+N I
Sbjct: 607 DKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKIL 660
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 135/276 (48%), Gaps = 16/276 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DV W T+I Y + G +EA+ F M + EPN T+ +S+C+ + L+
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFG-FEPNSVTITTAISSCARLLDLNR 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + L + + + +A+++MY KCG + +AI+VF + K +++W+++ISG
Sbjct: 226 GMEIHEELINSGFL-LDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYG 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G +QLF M GV P T +LI CS + +G + Y I +
Sbjct: 285 LKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHG-----YTIRNRI 339
Query: 181 QH----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD 232
Q + ++D+Y + G +E AE + +P +++ W +++ ++ +F
Sbjct: 340 QSDVFINSSLMDLYFKCGKVELAENIFKLIP-KSKVVSWNVMISGYVAEGKLFEALGLFS 398
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
+R+ V ++ + + A ++ E+ + +
Sbjct: 399 EMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNL 434
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W ++ GY + EA+ +F+++ +P+ T +VL AC + G+ +
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + + L + +VG++++ MY KC AI +FN + KD+ W+TVIS +G
Sbjct: 129 HTCL-VKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTV 173
++AL+ F LM G P+ VT IS+C+ H L++ G +L +S+
Sbjct: 188 FKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+VDMYG+ G LE A +MP
Sbjct: 248 ------------LVDMYGKCGHLEMAIEVFEQMP 269
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFN 102
L+ +L AC + +L G+ +H + T L + N + +IN+Y+ C A VF+
Sbjct: 6 LLPLLRACMNSKSLKQGKLIHQKVVT---LGLQNDIFLCKNLINLYLSCHLYDHAKCVFD 62
Query: 103 MLAYKDMIS-WSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFIALISACS----- 155
+ IS W+ +++G N +AL+LF L+ + PD T+ +++ AC
Sbjct: 63 NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKY 122
Query: 156 ------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
H LV GL++ +IV + +V MY + E+A EMP E
Sbjct: 123 VLGKMIHTCLVKTGLMM--------DIVVGSS----LVGMYAKCNAFEKAIWLFNEMP-E 169
Query: 210 AEWSVWGALLN 220
+ + W +++
Sbjct: 170 KDVACWNTVIS 180
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK V+W+ MIGGY G +AV +F+EM+ + +E T++ VL+A + + AL
Sbjct: 190 MPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANG-VQADEVTVIGVLAAATDLGALEL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V ++ R + S + NA+I+ KCGDV A+ VF + + ++SW++VI LA
Sbjct: 249 ARWVRRFVE-REGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALA 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A+++F M + GV PDDV FI +++ACSH G+VD+G F AM Y I P+
Sbjct: 308 MEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKI 367
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM+GRAG++E A F+R MPI+ +W +L++ACR H E+ + I + L++
Sbjct: 368 EHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLH 427
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN FA RW++ ++IR E+ + G+KK GCS +E++
Sbjct: 428 EYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELD 476
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 6/126 (4%)
Query: 40 PNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC---GDVG 95
PN+ T +L AC+++ + G H+ + ++ + V N +I+MY C G +G
Sbjct: 124 PNKFTFPFLLKACAALPGSPDVGLQAHA-AALKFGFATDQYVSNTLIHMY-SCFGGGFLG 181
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A VF+ + + ++WS +I G G A++LF M NGV D+VT I +++A +
Sbjct: 182 DARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAAT 241
Query: 156 HGGLVD 161
G ++
Sbjct: 242 DLGALE 247
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 182/287 (63%), Gaps = 2/287 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+ G++
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTMLSILPACAHLGAIDIGRW 388
Query: 64 VHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H YI R + ++ + ++I+MY KCGD+ A QVFN + +K + SW+ +I G AM+
Sbjct: 389 IHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A +FS M G+ PDD+TF+ L+SACS G++D G +F+ M+ Y+I P+ +H
Sbjct: 449 GRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEH 508
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ G +GL +EAE I M +E + +W +LL AC+I N E+ + Q L+ +
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIE 568
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A A RW + KIR + G+KK GCS IE++
Sbjct: 569 PENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 615
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 132/234 (56%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F+EM KT P+E+T+V V+SAC+ ++
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN-IRPDESTMVTVVSACAQSGSIEL 284
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I + + + N+++++Y KCG++ A +F L YKD+ISW+T+I G
Sbjct: 285 GRQVHSWIDD-HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + +
Sbjct: 344 HMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNA 403
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A + + S W A++ +H R D FD
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADAAFD 456
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ A GQ +
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQI 156
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV-------- 115
H ++ YDL + V ++I++YV+ G + A +VF+ ++D++S++ +
Sbjct: 157 HGHVLKLGYDLDL--FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRG 214
Query: 116 -----------------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
ISG A G ++AL+LF M+ + PD+ T + ++S
Sbjct: 215 YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVS 274
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
AC+ G ++ G + + + + ++D+Y + G LE A
Sbjct: 275 ACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNSLMDLYSKCGELETA 320
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 188/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWT +I GYA+ +A+++F+ M+ + EP+E ++ L+AC+ + AL
Sbjct: 174 MPQRNVISWTALITGYAQANRPHDAIALFRRMQ-LENVEPDEIAMLVALTACARLGALEL 232
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++ YI R L +N+ + NA+I+MY K GD+ A+QVF + +K +I+W+T+I+GL
Sbjct: 233 GEWIRHYID-RLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGL 291
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G G +AL++FS M V P+D+TFIA++SACSH GLV G F M + Y I P+
Sbjct: 292 ALHGLGTEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPK 351
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GRAG L+EA+ + +MP E +WG+LL AC H + E+ + Q L+
Sbjct: 352 IEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLAACNTHGDPELGELALQHLL 411
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +AL+SN +A RW ++ +R + G+KK G S IEVN
Sbjct: 412 ELEPDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVN 461
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++N Y K GD+ A +F + +++ISW+ +I+G A A+ LF M + V
Sbjct: 152 NAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVE 211
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
PD++ + ++AC+ G ++ G + + + + ++DMY ++G ++ A
Sbjct: 212 PDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAKSGDIKSA 269
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 184/289 (63%), Gaps = 3/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW T+IGGY+ EA S+F EM + PN T+ +L A +S+S+L G+
Sbjct: 462 KDMISWNTLIGGYSRNNLANEAFSLFTEM--LLQLRPNAVTMTCILPAAASLSSLERGRE 519
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y R L + V NA+I+MYVKCG + +A ++F+ L+ K++ISW+ +++G M+G
Sbjct: 520 MHAYALRRGYLE-DDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHG 578
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR A+ LF M ++G+ PD +F A++ ACSH GL D+G F AM ++I P+ +HY
Sbjct: 579 RGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHY 638
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ G L+EA FI MPIE + S+W +LL CRIHRN ++ + + + + +
Sbjct: 639 TCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEP 698
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A+RWE K++++I GL++ TGCSWIE +
Sbjct: 699 ENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKV 747
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 133/285 (46%), Gaps = 14/285 (4%)
Query: 1 MPK-RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP+ DV WT ++ GYA+ G E V +F++M P+ T+ VL + + ++
Sbjct: 155 MPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCG-VRPDAYTISCVLKCIAGLGSIE 213
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH + + VGNA++ Y K AI VF+ + ++D+ISW+++ISG
Sbjct: 214 DGEVVHGLLE-KLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGC 272
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +A++LF M + G D T ++++ AC+ L+ G ++ S + Q
Sbjct: 273 TSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVV-HGYSVKTGFISQ 331
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR---Q 236
T ++DMY R M ++ W A++ + + ++D + Q
Sbjct: 332 TSLANVLLDMYSNCSDWRSTNKIFRNM-VQKNVVSWTAMITS---YTRAGLYDKVAGLFQ 387
Query: 237 ELVNKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRRMGLKK 279
E+ +G FA+ S + FAG + + + R G++K
Sbjct: 388 EM-GLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK 431
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 7/165 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
M +++VVSWT MI Y G ++ +FQEM E T+ P+ + + L A + L
Sbjct: 358 MVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTR---PDIFAITSALHAFAGNELL 414
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ VH Y + R + V NA++ MYVKCG++ A +F+ + KDMISW+T+I G
Sbjct: 415 KHGKSVHGY-AIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGG 473
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ N +A LF+ M++ + P+ VT ++ A + +++G
Sbjct: 474 YSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERG 517
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SW +MI G G ++A+ +F M E E + ATL++VL AC+ + L
Sbjct: 257 MPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE-ELDSATLLSVLPACAELHLLFL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y S + + N +++MY C D ++F + K+++SW+ +I+
Sbjct: 316 GRVVHGY-SVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYT 374
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA------CSHGGLVDQGLILFKAMSTVY 174
G + LF M + G PD + + A HG V G + M V
Sbjct: 375 RAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSV-HGYAIRNGMEKVL 433
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAE 200
+ +++MY + G +EEA+
Sbjct: 434 AVTN------ALMEMYVKCGNMEEAK 453
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 48 VLSACSSISALSFGQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-ML 104
VL CS + +L G+ H + S+ + N++G ++ MY+KCGD+ A +VF+ M
Sbjct: 97 VLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMP 156
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
D+ W+ ++SG A G R+ + LF M GV PD T ++ + G ++ G
Sbjct: 157 QVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGE 216
Query: 165 IL 166
++
Sbjct: 217 VV 218
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
+ ++++SWT M+ GY G +A+++F++M + A P+ A+ +L ACS
Sbjct: 559 LSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIA-PDAASFSAILYACS 610
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 182/292 (62%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +I GYA+ G E + F+ M PN+AT+ VLSAC+ + A F
Sbjct: 147 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 206
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y T V V NA+I+MY KCG + IA++VF + +D+ISW+T+I+GLA
Sbjct: 207 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 266
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL LF M +G+ PD VTF+ ++ AC H GLV+ GL F +M T + I+P+
Sbjct: 267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 326
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H CVVD+ RAG L +A FI +MP++A+ +W LL A ++++ ++ + +EL+
Sbjct: 327 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 386
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + F ++SN + A R++DA +++ +R G KK+ G SWIE + +
Sbjct: 387 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGL 438
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+V W TMI GY E G EA S+F +M C + +
Sbjct: 86 PERDIVLWNTMISGYIEMGNMLEARSLFDQM------------------PCRDVMSW--- 124
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V+ Y GD+ +VF+ + +++ SW+ +I G A
Sbjct: 125 --------------------NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQ 164
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + L F M+ G V P+D T ++SAC+ G D G + K T+
Sbjct: 165 NGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDV 224
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMYG+ G +E A + + + W ++N H
Sbjct: 225 NVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 268
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 186/288 (64%), Gaps = 4/288 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY +EA+ +FQEM ++ E+ PN+ T++++L AC+ + A+ G++
Sbjct: 299 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTMLSILPACAHLGAIEIGRW 357
Query: 64 VHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H YI+ R V+N + ++I+MY KCGD+ A QVF+ + + + SW+ +I G AM
Sbjct: 358 IHVYINKRLK-GVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAM 416
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G A +FS M N + PDD+TF+ L+SACSH G++D G +F++M Y+I P+ +
Sbjct: 417 HGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLE 476
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C++D+ G +GL +EAE I M +E + +W +LL AC+++ N E+ + Q L+
Sbjct: 477 HYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKI 536
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + KIR + G+KK GCS IE++
Sbjct: 537 EPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 141/234 (60%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F+EM KT P+E+T+V+V+SAC+ +++
Sbjct: 195 IPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-VRPDESTMVSVVSACAQSASIEL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I S +V NA+I++Y+KCG+V A +F L+YKD+ISW+T+I G
Sbjct: 254 GRQVHSWIDDHGFGSNLKIV-NALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVPQ 179
++AL LF M+ +G P+DVT ++++ AC+H G ++ G + ++ + +
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 372
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+ H ++DMY + G +E A+ + + S W A++ +H R + FD
Sbjct: 373 SSHRTSLIDMYAKCGDIEAAQQVFDSI-LNRSLSSWNAMIFGFAMHGRANAAFD 425
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 35/191 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T +L +C+ A GQ +
Sbjct: 67 NLLIWNTMFRGHALSSDPVSALYLYVCM-ISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----------------- 106
H ++ YDL + V ++I+MYV+ G + A +VF+ ++
Sbjct: 126 HGHVLKLGYDLDL--YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKG 183
Query: 107 --------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
KD++SW+ +ISG A G ++AL+LF M+ V PD+ T ++++S
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243
Query: 153 ACSHGGLVDQG 163
AC+ ++ G
Sbjct: 244 ACAQSASIELG 254
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 184/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++ +W +I Y + G +EA+++F E++ +K A+P+E TLV+ LSAC+ + A+
Sbjct: 319 MPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL 378
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI R + ++ + +++++MY KCG + A++VF + +D+ WS +I+GL
Sbjct: 379 GGWIHVYIK-REGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLG 437
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G+ A+ LF M V P+ VTF ++ ACSH GLVD+G + F M VY +VP+
Sbjct: 438 MHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEM 497
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG LEEA I EM SVWGALL AC +H N E+ + +L+
Sbjct: 498 KHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLK 557
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G L+SN +A RWE +++R +R LKK+ GCS IE N ++
Sbjct: 558 LEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNV 609
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 129/254 (50%), Gaps = 36/254 (14%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW +MI +A+ E+A+ +F +ME+ + PN T+V VLSAC+ L FG++
Sbjct: 190 KDVVSWNSMISAFAQGNCPEDALELFLKMER-ENVMPNSVTMVGVLSACAKKLDLEFGRW 248
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA--- 120
V SYI R + V + NA+++MY KCG V A ++F+ + +D+ SW+ ++ G A
Sbjct: 249 VCSYIE-RKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMG 307
Query: 121 ----------------------------MNGCGRQALQLFSLMIINGVF-PDDVTFIALI 151
NG ++AL +F+ + ++ + PD+VT ++ +
Sbjct: 308 DYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTL 367
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
SAC+ G +D G + + IV + +VDMY + G LE+A + E +
Sbjct: 368 SACAQLGAIDLGGWIHVYIKR-EGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE-ERD 425
Query: 212 WSVWGALLNACRIH 225
VW A++ +H
Sbjct: 426 VYVWSAMIAGLGMH 439
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 113/220 (51%), Gaps = 3/220 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ ++ +W T+I YA ++ +F ++ E PN+ T V+ A S + A
Sbjct: 85 IPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRV 144
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH ++ + + + N+++ Y CGD+ +A ++F ++ KD++SW+++IS A
Sbjct: 145 GTAVHG-MAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
C AL+LF M V P+ VT + ++SAC+ ++ G + + V T
Sbjct: 204 QGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLT 263
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
A ++DMY + G +++A+ EMP E + W +L+
Sbjct: 264 LCNA-MLDMYTKCGSVDDAQKLFDEMP-ERDVFSWTIMLD 301
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VSWT+MI G EA+ +F + +T EP+ TLV+VL A +++S+L G+
Sbjct: 516 KDIVSWTSMITCCVHNGLAIEALELFNSLIETN-IEPDLITLVSVLYAAAALSSLKKGKE 574
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ R + L+ N++++MY +CG + A +FN + +D+I W+++I+ M+G
Sbjct: 575 IHGFL-IRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHG 633
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CG+ A+ LFS M V PD +TF+AL+ ACSH GLV +G F+ M Y++ P +HY
Sbjct: 634 CGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHY 693
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R+ LEEA F+R MPIE VW ALL ACRIH N+++ + ++L+
Sbjct: 694 ACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNT 753
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SNTFA RW D ++R ++ LKKK GCSWIEV I
Sbjct: 754 ENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKI 802
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 123/236 (52%), Gaps = 27/236 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D++SWTT+I GYA+ +A+++ ++++ K + + + ++L ACS + +
Sbjct: 413 MPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEK-MDVDPMMIGSILLACSGLKSEKL 471
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y+ + L+ NA++N+Y + V A VF + KD++SW+++I+
Sbjct: 472 IKEIHGYVLKGGLADI--LIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCV 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
NG +AL+LF+ +I + PD +T ++++ A + HG L+ +G L
Sbjct: 530 HNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGL 589
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ +VDMY R G +E A + + + +W +++NA +H
Sbjct: 590 IAN------------SLVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMH 632
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K D VSW ++I + G EA+S+F+ M++ E N T V+ L AC + +
Sbjct: 211 MEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVG-VESNTYTFVSALQACEGPTFIKI 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + + V NA+I MY CG + A +VF + +KD +SW+T++SG+
Sbjct: 270 GRGIHAVI-LKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMV 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N A+ F M +G PD V+ + +I+A + G+ + A + + I
Sbjct: 329 QNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEV-HAYAIKHGIDSNM 387
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-----NACRI 224
++DMYG+ ++ + MP E + W ++ N C +
Sbjct: 388 HIGNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAGYAQNECHL 435
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 116/223 (52%), Gaps = 13/223 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D VSW T++ G + +A++ FQ+M+ + + +P++ +++N+++A + L G
Sbjct: 315 KDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGME 373
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+Y + ++ + + +GN++I+MY KC V F + KD+ISW+T+I+G A N
Sbjct: 374 VHAY-AIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNE 432
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVPQ 179
C AL L + + + D + +++ ACS GL + LI + + +I+ Q
Sbjct: 433 CHLDALNLLRKVQLEKMDVDPMMIGSILLACS--GLKSEKLIKEIHGYVLKGGLADILIQ 490
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+V++YG L++ A + + W +++ C
Sbjct: 491 N----AIVNVYGELALVDYARHVFESIN-SKDIVSWTSMITCC 528
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 112/244 (45%), Gaps = 20/244 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R + +W MIG G EA+ +++EM + + T VL AC +
Sbjct: 108 MSERTIFTWNAMIGACVSAGRYVEAIELYKEM-RVLGVSLDAFTFPCVLKACGAFKERRL 166
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
G +H ++ + V NA+I MY KCGD+G A +F+ ++ D +SW+++IS
Sbjct: 167 GCEIHG-VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISA 225
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
G +AL LF M GV + TF++ + AC +G K ++ ++
Sbjct: 226 HVGEGESLEALSLFRRMQEVGVESNTYTFVSALQAC-------EGPTFIKIGRGIHAVIL 278
Query: 179 QTQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 232
++ H+ ++ MY G +E+AE + M + + W LL+ + +ND D
Sbjct: 279 KSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSG--MVQNDMYSD 335
Query: 233 PIRQ 236
I
Sbjct: 336 AINH 339
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%)
Query: 29 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88
F + T P + L C+S AL GQ +H++ + S + ++MY
Sbjct: 33 FTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMY 92
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
KCG A++VF+ ++ + + +W+ +I G +A++L+ M + GV D TF
Sbjct: 93 GKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFP 152
Query: 149 ALISAC 154
++ AC
Sbjct: 153 CVLKAC 158
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK V+W+ MIGGY G +AV +F+EM+ + +E T++ VL+A + + AL
Sbjct: 190 MPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANG-VQADEVTVIGVLAAATDLGALEL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V ++ R + S + NA+I+ KCGDV A+ VF + + ++SW++VI LA
Sbjct: 249 ARWVRRFVE-REGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALA 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A+++F M + GV PDDV FI +++ACSH G+VD+G F AM Y I P+
Sbjct: 308 MEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKI 367
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM+GRAG++E A F+R MPI+ +W +L++ACR H E+ + I + L++
Sbjct: 368 EHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLH 427
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN FA RW++ ++IR E+ + G+KK GCS +E++
Sbjct: 428 EYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELD 476
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 40 PNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC---GDVG 95
PN+ T +L AC+++ + G H+ + ++ + V N +I+MY C G +G
Sbjct: 124 PNKFTFPFLLKACAALPGSPDVGLQAHA-AALKFGFATDQYVSNTLIHMY-SCFGGGFLG 181
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A VF+ + + ++WS +I G G A+ LF M NGV D+VT I +++A +
Sbjct: 182 DARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAAT 241
Query: 156 HGGLVD 161
G ++
Sbjct: 242 DLGALE 247
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+WT +I GY + E+ + VF+EM K+ A PNE TL +VLSAC+ + AL
Sbjct: 266 MPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + + ++ VG +I+ Y KCG + AI VF L K++ +W+ +I+G A
Sbjct: 325 GRRVHCYV-IKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A+ LF M+ + V P++VTFI ++SAC+HGGLV++G LF +M + + P+
Sbjct: 384 AHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPKA 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD++GR GLLEEA+A I MP+E +VWGAL +C IH++ E+ ++
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N ++ + W+D ++R +++ + K GCSWIEV
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVK 552
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 5/223 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSWT MI G+ EA++ F EM+++ A NE T+V+VL A + FG+
Sbjct: 167 KDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVA-ANEMTVVSVLKATRKAEDVRFGRS 225
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + +G+++++MY KCG A +VF+ + +++++W+ +I+G
Sbjct: 226 IHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGR 285
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQH 182
C + + +F M+ + V P++ T +++SAC+H G + +G + + EI T
Sbjct: 286 CFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEI--NTTV 343
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D Y + G LEEA + E E W A++N H
Sbjct: 344 GTTLIDFYAKCGCLEEA-ILVFERLREKNVYTWTAMINGFAAH 385
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSV--FQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
W +++G ++ R +S +++M + P+ T +L A + + Q+ H+
Sbjct: 70 WDSLVGHFSGRVTLNRRLSFLSYRQMRRNGVV-PSRHTFPPLLKAVFKLRDANPFQF-HA 127
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+I ++ V N++I+ Y CG +VF+ KD++SW+ +I G N
Sbjct: 128 HI-LKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSL 186
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
+A+ F M +GV +++T ++++ A V G + + + +
Sbjct: 187 EAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSL 246
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
VDMYG+ G ++A+ EMP W AL+
Sbjct: 247 VDMYGKCGCYDDAQKVFDEMP-SRNVVTWTALI 278
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 192/293 (65%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D +W+ +I Y +GF EA+++F M++ + PN +++++LS C S+++L
Sbjct: 290 MKEKDDGTWSALIKIYERKGFELEALALFSLMQR-EGVRPNFPSIISILSVCGSLASLDH 348
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VHS + + +DL + V + +I MY+KCGD+ +VF+ + KD++ W+++I+G
Sbjct: 349 GRQVHSQLVRSHFDLDI--YVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGY 406
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL++F M +G PD++TFI ++SAC + G V +GL +F++M + Y++ +
Sbjct: 407 AQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQK 466
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
T+HYAC+VD+ GRAG L EA I MP+EA+ VWGALL+ACR H+N ++ + ++L+
Sbjct: 467 TEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLL 526
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + L+SN +A RW+D ++R +R + K GCSWIEV+ +
Sbjct: 527 QLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKV 579
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT+M+ GY + G +EA +F M E N + +L +
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRM-----PEKNVVSWTVMLGGLIEDGRVDE 158
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + I + ++ +N++G G + A ++F+ + +++++W+++ISG A
Sbjct: 159 ARRLFDMIPVKDVVASTNMIGGLCSE-----GRLSEAREIFDEMPQRNVVAWTSMISGYA 213
Query: 121 MNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAM 170
MN A +LF +M PD +VT+ A++ + G +++ LFKAM
Sbjct: 214 MNNKVDVARKLFEVM------PDKNEVTWTAMLKGYTRSGRINEAAELFKAM 259
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 10/163 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV+WT+MI GYA + A +F+ M + NE T +L + ++
Sbjct: 197 MPQRNVVAWTSMISGYAMNNKVDVARKLFEVM-----PDKNEVTWTAMLKGYTRSGRINE 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + + ++ +N G+VG A VF+ + KD +WS +I
Sbjct: 252 AAELFKAMPVKPVAACNGMIMGFGLN-----GEVGKARWVFDQMKEKDDGTWSALIKIYE 306
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +AL LFSLM GV P+ + I+++S C +D G
Sbjct: 307 RKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG 349
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 21/210 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ +SW ++ GY + G EA VF +M + NV+S S +
Sbjct: 73 MPERNTISWNGLVSGYVKNGMISEARKVFDKMPER-----------NVVSWTSMVRGYVQ 121
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + N+V ++ ++ G V A ++F+M+ KD+++ + +I GL
Sbjct: 122 EGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGL 181
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A ++F M V V + ++IS + VD LF+ M E+
Sbjct: 182 CSEGRLSEAREIFDEMPQRNV----VAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT-- 235
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++ Y R+G + EA + MP++
Sbjct: 236 ---WTAMLKGYTRSGRINEAAELFKAMPVK 262
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
I R S S + I+ + + G + A +F+ L K + SW+ +++G N +
Sbjct: 6 IPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAE 65
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYAC 185
A +LF M + +++ L+S G++ + +F M P+ +
Sbjct: 66 AQKLFDKMPER----NTISWNGLVSGYVKNGMISEARKVFDKM-------PERNVVSWTS 114
Query: 186 VVDMYGRAGLLEEAEAFIREMPIE--AEWSV-WGALLNACRIHRNDEMFDPI 234
+V Y + GL++EAE MP + W+V G L+ R+ +FD I
Sbjct: 115 MVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMI 166
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD VSW MI GY++ G EA+ +F +ME+ + N ++ + LS C+ + AL
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER-EGGRLNRSSFSSALSTCADVVALEL 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A +F +A KD++SW+T+I+G +
Sbjct: 428 GKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL+ F M G+ PDD T +A++SACSH GLVD+G F M+ Y ++P +
Sbjct: 487 RHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNS 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC+VD+ GRAGLLE+A ++ MP E + ++WG LL A R+H N E+ + ++
Sbjct: 547 QHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 606
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + RW D K+R +R G+KK G SWIE+
Sbjct: 607 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW TM+ GYA+ G ++A SVF M E N+ + +LSA S +
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRM-----PEKNDVSWNALLSAYVQNSKM-- 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +R + ++ + N ++ +VK + A Q F+ + +D++SW+T+I+G A
Sbjct: 205 -EEACMLFKSRENWAL--VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYA 261
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
+G +A QLF + VF T+ A++S +V++ LF M E+
Sbjct: 262 QSGKIDEARQLFDESPVQDVF----TWTAMVSGYIQNRMVEEARELFDKMPERNEV 313
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 21/210 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +DV +WT M+ GY + EEA +F +M E NE + +L+ +
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKM-----PERNEVSWNAMLAGYVQGERMEMA 331
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + + R +VS N +I Y +CG + A +F+ + +D +SW+ +I+G +
Sbjct: 332 KELFDVMPCR---NVSTW--NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 386
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G +AL+LF M G + +F + +S C+ ++ G L +V
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHG------RLVKGGY 440
Query: 182 HYACVVD-----MYGRAGLLEEAEAFIREM 206
C V MY + G +EEA +EM
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 49/267 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W I Y G C EA+ VF+ M + N ++S + +
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYN-----GMISGYLRNGEFELARKL 117
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ R +LV N +I YV+ ++G A ++F ++ +D+ SW+T++SG A NG
Sbjct: 118 FDEMPER------DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNG 171
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----------- 172
C A +F M +DV++ AL+SA +++ +LFK+
Sbjct: 172 CVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLG 227
Query: 173 ----VYEIVPQTQHY-----------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
+IV Q + ++ Y ++G ++EA E P++ ++ W A
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT-WTA 286
Query: 218 LLNACRIHR----NDEMFD--PIRQEL 238
+++ +R E+FD P R E+
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEV 313
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 182/292 (62%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW +I GYA+ G E + F+ M PN+AT+ VLSAC+ + A F
Sbjct: 94 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 153
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y T V V NA+I+MY KCG + IA++VF + +D+ISW+T+I+GLA
Sbjct: 154 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 213
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL LF M +G+ PD VTF+ ++ AC H GLV+ GL F +M T + I+P+
Sbjct: 214 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 273
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H CVVD+ RAG L +A FI +MP++A+ +W LL A ++++ ++ + +EL+
Sbjct: 274 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 333
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + F ++SN + A R++DA +++ +R G KK+ G SWIE + +
Sbjct: 334 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGL 385
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 43/225 (19%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+V W TMI GY E G EA S+F +M C + +
Sbjct: 33 PERDIVLWNTMISGYIEMGNMLEARSLFDQM------------------PCRDVMSW--- 71
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V+ Y GD+ +VF+ + +++ SW+ +I G A
Sbjct: 72 --------------------NTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQ 111
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + L F M+ G V P+D T ++SAC+ G D G + K T+
Sbjct: 112 NGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDV 171
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMYG+ G +E A + + + W ++N H
Sbjct: 172 NVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 215
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 182/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD + W MI GYA+ G E + +F++M K PNE T++ VLSAC AL
Sbjct: 32 LEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAK-VRPNEVTVLAVLSACGQTGALET 90
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI + ++ VG ++I+MY KCG + A VF ++ KD+++W++++ G A
Sbjct: 91 GRWVHSYIENN-GIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYA 149
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + AL+LF M + G P D+TFI +++ACSH GLV +G F +M Y I P+
Sbjct: 150 MHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKV 209
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V++ GRAG LEEA ++ M I+ + +WG LL ACR+H N + + I + LV+
Sbjct: 210 EHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVS 269
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A A WE ++R ++ G +K+ GCS IEVN +
Sbjct: 270 QNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPGCSSIEVNNKV 321
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A+I Y K G + A +F+ L +D I W+ +I G A +G + L LF M+ V P
Sbjct: 11 AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
++VT +A++SAC G ++ G + + I + ++DMY + G LE+A
Sbjct: 71 NEVTVLAVLSACGQTGALETGRWVHSYIEN-NGIGINVRVGTSLIDMYSKCGSLEDA 126
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 184/288 (63%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW MI GY ++A+ VF M E P++ TL+++LSAC+ + +L
Sbjct: 260 MPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEH 319
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++++SYI + L +S +GNA+I+M+ KCGDV A +VF+ ++ + +I+W+T++SGLA
Sbjct: 320 GKWINSYIK-KNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLA 378
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG R+A+ LF M + G PDDV FIA++SAC+HGGLV++G +F M + I P+
Sbjct: 379 VNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRI 438
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEA F M ++ +W LL C+IH N ++ + +++++
Sbjct: 439 EHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMD 498
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++ + L+SN A RWED R +R+ ++K GCS I+V
Sbjct: 499 QEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQV 546
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 47/240 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+SW +MI Y RG + A+ + +M E N T +V+ S +
Sbjct: 136 MPERDVISWNSMISAYMTRGEIQSAIGLLDKM-----PERNIVTWNSVVCGLSKAGNMEL 190
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
V + R ++S N++I+ YV+ GDV A +F + K ++SW+ +ISG A
Sbjct: 191 AHSVFEQMPLRNEVS-----WNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYA 245
Query: 121 MNGCGR-------------------------------QALQLFSLMIING-VFPDDVTFI 148
NG + QAL +F M+ING PD T I
Sbjct: 246 TNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLI 305
Query: 149 ALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+++SAC+H G ++ G + + + ++ +P ++DM+ + G +E A+ M
Sbjct: 306 SILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGN---ALIDMFAKCGDVENAKEVFHHM 362
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 16/222 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK VS + YA +EA+ V+ M K E N T +L + AL
Sbjct: 37 LPKLITVSSAFNLLDYATH---KEALRVYSRM-KALMVEANSFTFTFLLKCFETSQALED 92
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H I + S V N+++ Y C + +G A +VF + +D+ISW+++IS
Sbjct: 93 GRVIHGEI-LKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAY 151
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G + A+ L M + VT+ +++ S G ++ +F+ M E+
Sbjct: 152 MTRGEIQSAIGLLDKMPERNI----VTWNSVVCGLSKAGNMELAHSVFEQMPLRNEV--- 204
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++ Y R G + A++ +MP E W A+++
Sbjct: 205 --SWNSMISGYVRIGDVRAAQSIFYQMP-EKTVVSWTAMISG 243
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ M+ GY + G EA+ VF +M+ + P++ LV VL+AC+ + AL
Sbjct: 185 MPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ-AQGVRPDDTVLVGVLAACAQLGALEQ 243
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ ++ ++ +G A+++MY KCG+V + ++VF + K++++W+T+I GLA
Sbjct: 244 GKWVHGYLKAN-NIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLA 302
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +L LFS M +GV PDD+ FI + AC+H GLVD+G LF +M Y I P+
Sbjct: 303 MHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKI 362
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R GLL EA + +MP++ + +WGAL+ CR H+N E+ + + + +
Sbjct: 363 EHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIE 422
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+ N ++ + R A +IR+ +R G++K GCS +E+
Sbjct: 423 LEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIK 471
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 9/153 (5%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
LVN +A + A G+ +++ R +V N +I + + G V A +F+ +
Sbjct: 128 LVN--NALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEM 185
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
++ +SWS +++G G GR+AL +FS M GV PDD + +++AC+ G ++QG
Sbjct: 186 PERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGK 245
Query: 165 IL---FKAMSTVYEIVPQTQHYACVVDMYGRAG 194
+ KA + + T +VDMY + G
Sbjct: 246 WVHGYLKANNIRMTVFLGT----ALVDMYAKCG 274
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 181/289 (62%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R VVSWTTMI GY++ G +A+ +F +MEK KE PNE T+ +V SAC+ + AL
Sbjct: 102 MPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEV 161
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLA-YKDMISWSTVISG 118
G+ + SY R + + NL V N ++ MY +CG + A VFN + +++ SW++++ G
Sbjct: 162 GERIESY--ARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMG 219
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA++G +ALQL+ M+ G+ PDDVTF+ LI AC+HGGLV +G LF++M T + IVP
Sbjct: 220 LAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVP 279
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+ GRAG L+EA ++ MP++ + +WG LL AC H N E + + L
Sbjct: 280 KLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESL 339
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + ++ N +A A RW+ K+R ++ + K G S IE
Sbjct: 340 FQVEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIE 388
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 7/166 (4%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDV 94
K PNE T + AC+S +L G+ +H+ +I + +D V L A+++MY K G +
Sbjct: 4 KGCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALT--ALVDMYAKLGVL 61
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
+A QVF+ + +D+ +W+++I+G + +G AL+LF LM V V++ +IS
Sbjct: 62 MLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSV----VSWTTMISGY 117
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
S G+ + L +F M E+ P A V + G LE E
Sbjct: 118 SQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGE 163
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 180/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ +SWTT+I GY G +EA + +M + P+++T LS+C+ ++AL
Sbjct: 177 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNK--PDQSTFACGLSSCAHLAALQV 234
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + V NA+I MY KCG + A +F + + D++SW+++I+ A
Sbjct: 235 GKQLHQLV-MKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYA 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG GR+AL+LF M + GV PD+VTF+ ++SACSH GL+DQGL LFK M Y I P
Sbjct: 294 LNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLA 353
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG LEEA +R M I A +WGALL ACRIH N E+ ++L+
Sbjct: 354 EHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLE 413
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN A A RW++ ++R ++ G +K+ G SWIE+
Sbjct: 414 FEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQ 462
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 41/236 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------------------------- 35
MP +D+VSW +M+ GY G + F+EM +
Sbjct: 53 MPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFF 112
Query: 36 -KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGD 93
K PN + V +L + ++ + + + R N+V NA+I YV+
Sbjct: 113 EKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR------NVVAWNAMIAAYVQNCH 166
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
V AI +F + K+ ISW+TVI+G G +A QL + M PD TF +S+
Sbjct: 167 VDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNK-PDQSTFACGLSS 225
Query: 154 CSHGGLVDQGLILFK-AMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREM 206
C+H + G L + M + Y T + ++ MY + G + AE +++
Sbjct: 226 CAHLAALQVGKQLHQLVMKSGYA----TDLFVSNALITMYAKCGSISSAELLFKDI 277
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y K A ++F+ + KD++SW+++++G NG R LQ F M
Sbjct: 31 NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAER--- 87
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
D V++ ++ G ++ F+ + P T + ++ + R G + EA
Sbjct: 88 -DVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-----PNTVSWVTMLCGFARFGKIAEARR 141
Query: 202 FIREMPIEAEWSVWGALLNA 221
+MPI W A++ A
Sbjct: 142 LFDQMPIR-NVVAWNAMIAA 160
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 120/294 (40%), Positives = 181/294 (61%), Gaps = 8/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV+ W TMIGGY EEA+ +F+ M + + PN+ T + VL AC+S+ AL
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLR-ENVTPNDVTFLAVLPACASLGALDL 378
Query: 61 GQYVHSYISTRYDLSVSNLVGN-----AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G++VH+YI +L + V N ++I MY KCG V +A QVF + + + SW+ +
Sbjct: 379 GKWVHAYIDK--NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM 436
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
ISGLAMNG +AL LF MI G PDD+TF+ ++SAC+ G V+ G F +M+ Y
Sbjct: 437 ISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYG 496
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
I P+ QHY C++D+ R+G +EA+ + M +E + ++WG+LLNACRIH E + +
Sbjct: 497 ISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVA 556
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L + + G + L+SN +AGA RW+D KIR ++ G+KK GC+ IE++
Sbjct: 557 ERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEID 610
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GY + G EEA++ F M++ + PN++T+V+VLSAC + +L
Sbjct: 219 IPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA-DVSPNQSTMVSVLSACGHLRSLEL 277
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ S++ R LV NA+++MY KCG++G A ++F+ + KD+I W+T+I G
Sbjct: 278 GKWIGSWVRDRGFGKNLQLV-NALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYC 336
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IV 177
+AL LF +M+ V P+DVTF+A++ AC+ G +D G + + + V
Sbjct: 337 HLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNV 396
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
+ ++ MY + G +E AE R M + S W A+++ ++ + E + +E
Sbjct: 397 NNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERALGLFEE 455
Query: 238 LVNK 241
++N+
Sbjct: 456 MINE 459
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 31/182 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS---------- 54
++ W T+I ++ ++ +F +M + PN T ++ +C+
Sbjct: 91 NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSG-LYPNSHTFPSLFKSCAKSKATHEAKQL 149
Query: 55 -ISALSFGQYVHSYISTRY--------DLSVSNLVGN-----------AVINMYVKCGDV 94
AL ++H ++ T +L + LV + A+I YV G V
Sbjct: 150 HAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHV 209
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A ++F+ + KD++SW+ +I+G +G +AL F+ M V P+ T ++++SAC
Sbjct: 210 DDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269
Query: 155 SH 156
H
Sbjct: 270 GH 271
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 179/283 (63%), Gaps = 2/283 (0%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V+W TMI Y + G A+S+FQ+M+ ++ +P E T+V++LSAC+ + AL G+++H
Sbjct: 99 VTWNTMISAYVQCGEFGTAISMFQQMQ-SENVKPTEVTMVSLLSACAHLGALDMGEWIHG 157
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
YI T+ L + ++GNA+I+MY KCG + AI VF+ L+ K++ W+++I GL MNG G
Sbjct: 158 YIRTK-RLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGE 216
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
+A+ F +M G+ PD VTF+ ++S CSH GL+ G F M VY + P +HY C+
Sbjct: 217 EAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCM 276
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
VD+ GRAG L+EA IR MP++ V G+LL AC+IH++ ++ + + Q+L+
Sbjct: 277 VDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDG 336
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A RW+D N R + + G+ K GCS IEVN
Sbjct: 337 GNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVN 379
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++++ W ++I G G EEA++ F MEK + +P+ T V +LS CS LS
Sbjct: 194 LSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEK-EGIKPDGVTFVGILSGCSHSGLLSA 252
Query: 61 GQYVHSYISTRYDL 74
GQ S + Y L
Sbjct: 253 GQRYFSEMLGVYGL 266
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 185/291 (63%), Gaps = 2/291 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++DV+SW TMIGGY+ EEA+++F+ M ++ +PN+ T + +L AC+ + AL G+
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN-VKPNDVTFLGILHACACLGALDLGK 384
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VH+YI S + + ++I+MY KCG + A +VF + +++ SW+ ++SG AM+
Sbjct: 385 WVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMH 444
Query: 123 GCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G +AL LFS M+ G+F PDD+TF+ ++SAC+ GLVD G F++M Y I P+ Q
Sbjct: 445 GHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQ 504
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C++D+ RA EEAE ++ M +E + ++WG+LL+AC+ H E + + + L
Sbjct: 505 HYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQL 564
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G F L+SN +AGA RW+D +IR + G+KK GC+ IE++ +
Sbjct: 565 EPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDV 615
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 142/259 (54%), Gaps = 10/259 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GY + G EEA+ F EM++ PN++T+V VLSAC +
Sbjct: 223 IPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN-VLPNKSTMVVVLSACGHTRSGEL 281
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++ S++ R + SNL + NA+I+MY KCG+ IA ++F+ + KD+ISW+T+I G
Sbjct: 282 GKWIGSWV--RDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGY 339
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ +AL LF +M+ + V P+DVTF+ ++ AC+ G +D G + +
Sbjct: 340 SYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSN 399
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ ++DMY + G +E AE R M + W A+L+ +H + E + E+V
Sbjct: 400 ASLWTSLIDMYAKCGCIEAAERVFRSMH-SRNLASWNAMLSGFAMHGHAERALALFSEMV 458
Query: 240 NKKGVSVGTFALMSNTFAG 258
NK G F TF G
Sbjct: 459 NK-----GLFRPDDITFVG 472
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 33/185 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V W ++I GY+ ++ +F M +PN T + +C+ A G+
Sbjct: 93 KHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYG-VQPNSHTFPFLFKSCTKAKATHEGK 151
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM------------------- 103
+H++ + + L + V +VI+MY G++ A VF+
Sbjct: 152 QLHAH-ALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ 210
Query: 104 ------------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+ KD++SW+ +ISG +G +A+ F M V P+ T + ++
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVL 270
Query: 152 SACSH 156
SAC H
Sbjct: 271 SACGH 275
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++ SW M+ G+A G E A+++F EM P++ T V VLSAC+ +
Sbjct: 426 MHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDL 485
Query: 61 G-QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDMISWSTVISG 118
G QY S I Y +S +I++ + A I + NM D W +++S
Sbjct: 486 GHQYFRSMIQD-YGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSA 544
Query: 119 LAMNG 123
+G
Sbjct: 545 CKAHG 549
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 179/288 (62%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
PK RDVV+WT MIGGY++ G +A+ + EM E+ + PN T+ L AC+S++ALS
Sbjct: 435 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALS 494
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+Y +V V N +I+MY KCGD+G A VF+ + K+ ++W+++++G
Sbjct: 495 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGY 554
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +AL +F M G D VT + ++ ACSH G++DQG+ F M T + + P
Sbjct: 555 GMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPG 614
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAG L A I EMP+E VW ALL+ CRIH E+ + +++
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKIT 674
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G++ L+SN +A A RW+D +IR +R G+KK+ GCSW+E
Sbjct: 675 ELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVE 722
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 20/260 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+ I GYA+RG EA+ V ++M + +PNE TL++VLS C+S+ AL G+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG-IKPNEVTLISVLSGCASVGALMHGK 385
Query: 63 YVHSYISTRYDLSV-------SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWS 113
+H Y + +Y + + N+V N +I+MY KC V IA +F+ L+ K D+++W+
Sbjct: 386 EIHCY-AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444
Query: 114 TVISGLAMNGCGRQALQLFSLMIING--VFPDDVTF-IALISACSHGGLVDQGLILFKAM 170
+I G + +G +AL+L S M P+ T AL++ S L I A+
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYAL 504
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE- 229
VP C++DMY + G + +A M +E W +L+ +H E
Sbjct: 505 RNQQNAVPLFVS-NCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGEE 562
Query: 230 ---MFDPIRQELVNKKGVSV 246
+F+ +R+ GV++
Sbjct: 563 ALGIFEEMRRIGFKLDGVTL 582
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 9/222 (4%)
Query: 2 PKRD--VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
P D V W ++I Y G + +S F M P+ T V AC IS++
Sbjct: 86 PPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT-PDNYTFPFVFKACGEISSVR 144
Query: 60 FGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G H+ +R +SN+ VGNA++ MY +CG + A +VF+ + D++SW+++I
Sbjct: 145 CGDSSHAL--SRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIES 202
Query: 119 LAMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G + AL++FS M G PDD+T + ++ C+ G G F + E++
Sbjct: 203 YAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGK-QFHGFAVTSEMI 261
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
C+VDMY + G+++EA MP++ S W A++
Sbjct: 262 QNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVS-WNAMV 302
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 36/198 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP DVVSW ++I YA+ G + A+ +F +M P++ TLVNVL C+S+ S
Sbjct: 188 MPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSL 247
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS--------- 111
G+ H + T ++ + VGN +++MY K G + A VF+ + KD++S
Sbjct: 248 GKQFHGFAVTS-EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYS 306
Query: 112 --------------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
WS ISG A G G +AL + M+ +G+ P++V
Sbjct: 307 QIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEV 366
Query: 146 TFIALISACSHGGLVDQG 163
T I+++S C+ G + G
Sbjct: 367 TLISVLSGCASVGALMHG 384
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ V+WT+++ GY G+ EEA+ +F+EM + + + TL+ VL ACS +
Sbjct: 539 MMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIG-FKLDGVTLLVVLYACSHSGMIDQ 597
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + + T + +S ++++ + G + A+++ M + W ++S
Sbjct: 598 GMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCC 657
Query: 120 AMNG 123
++G
Sbjct: 658 RIHG 661
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW+ M+ GY + G EA+ +F M+ P++ LV VL+AC+ + L
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQ-ADGVRPDDTVLVGVLAACAQLGVLEQ 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ ++ ++ +G A+++MY KCG++ +A++VF ++ K++++W+T+I GLA
Sbjct: 362 GKWVHGYLKAN-NIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLA 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LFS M GV PDD+ FI + AC+H GLVD+G LF +M Y I P+
Sbjct: 421 MHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKI 480
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R GLL EA + +MP++ + +WGAL+ CR H+N E+ + + + +
Sbjct: 481 EHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIE 540
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+ N +A + R A +IR +R G+ K GCS +E+
Sbjct: 541 LEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIK 589
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
A + V +A + A G+ + + R SV N +I Y + G V A +F+
Sbjct: 242 AGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFD 301
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162
+ ++ +SWS +++G G GR+AL LF+ M +GV PDD + +++AC+ G+++Q
Sbjct: 302 EMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQ 361
Query: 163 GLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G + KA + + T +VDMY + G ++ A + M E W ++
Sbjct: 362 GKWVHGYLKANNIRITVFLGT----ALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMI 416
Query: 220 NACRIH-RNDEMFDPIRQ 236
+H R E + Q
Sbjct: 417 KGLAMHGRGSEALELFSQ 434
>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
Length = 567
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW MI GY G EEA+ + M + + +P+ ATL+ VL+ACS+++ L G+
Sbjct: 233 KDVISWNAMIAGYVHNGHGEEAMRLHALMFR-EGVKPDHATLIAVLTACSALALLRQGKS 291
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ I+ + L NA++ MY KCG+VG + VF L KD++SW+T+I+ A +G
Sbjct: 292 THA-IAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHG 350
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++ + LF M + G+ PDD+TF++++SAC H G+VD L LF MS+ Y I P+ +HY
Sbjct: 351 KYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHY 410
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ RAG LE+A ++I+ MP++AE +VWG+LL AC+IH N ++ + + LV
Sbjct: 411 ACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDS 470
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G + ++SN +A A W N+IR +++ G+KK+ G SW E+ +
Sbjct: 471 QSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPGYSWTEIGNEV 519
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 94/175 (53%), Gaps = 16/175 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVS+TTM+ A RG E A VF M + N + ++S C +
Sbjct: 137 MPERNVVSYTTMVDWLARRGEVERAREVFDSMP-----DRNLVSWAAMISGC-----VEN 186
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +V + + N+V A+I + K GDV A ++F+ + KD+ISW+ +I+G
Sbjct: 187 GMFVEAR-ELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGY 245
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAM 170
NG G +A++L +LM GV PD T IA+++ACS L+ QG I KAM
Sbjct: 246 VHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAM 300
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW ++I G G + A + F E N AT +L+ + +
Sbjct: 75 MPSRDVVSWNSIIAGCLAHGDLDAASAYF-----AGAPERNVATWNAMLAGLVRLGRVVD 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q + + R +S + +V + + G+V A +VF+ + ++++SW+ +ISG
Sbjct: 130 AQRLFDEMPERNVVSYTTMV-----DWLARRGEVERAREVFDSMPDRNLVSWAAMISGCV 184
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
NG +A +LF M V V A+I+ G VD LF
Sbjct: 185 ENGMFVEARELFEAMPEKNV----VACTAMITGHCKQGDVDSARRLF 227
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 26/195 (13%)
Query: 1 MPKRDVVSWTTMIGGY--AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
M RDVVSW ++ A R A +F E +++ + ++++ C + L
Sbjct: 41 MTHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDV----VSWNSIIAGCLAHGDL 96
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+Y + + +V+ NA++ V+ G V A ++F+ + ++++S++T++
Sbjct: 97 DAAS---AYFAGAPERNVATW--NAMLAGLVRLGRVVDAQRLFDEMPERNVVSYTTMVDW 151
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
LA G +A ++F M PD V++ A+IS C G+ + LF+AM
Sbjct: 152 LARRGEVERAREVFDSM------PDRNLVSWAAMISGCVENGMFVEARELFEAM------ 199
Query: 177 VPQTQHYACVVDMYG 191
P+ AC + G
Sbjct: 200 -PEKNVVACTAMITG 213
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 32/172 (18%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
L N I+ + GDV A +VF+ + ++D++SW+ +++ L GR L + + +
Sbjct: 16 LRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWR--AGRHHLPA-ARRLFD 72
Query: 139 GVFP--DDVTFIALISAC-SHG----------GLVDQGLILFKAM-------------ST 172
P D V++ ++I+ C +HG G ++ + + AM
Sbjct: 73 EAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQR 132
Query: 173 VYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+++ +P+ Y +VD R G +E A MP + W A+++ C
Sbjct: 133 LFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMP-DRNLVSWAAMISGC 183
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 189/294 (64%), Gaps = 6/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDI 326
Query: 61 GQYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVI 116
G+++H YI + ++ ++ + ++I+MY KCGD+ A QV + A+ + + +W+ +I
Sbjct: 327 GRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMI 386
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
G AM+G A +FS M NG+ PDD+TF+ L+SACSH G++D G +F++M Y I
Sbjct: 387 FGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNI 446
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P+ +HY C++D+ G +GL +EAE I MP+E + +W +LL AC+IH N E+ + +
Sbjct: 447 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAK 506
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT-GCSWIEVN 289
+L+ + + G++ L+SN +A A +W + KIR + G+KKK GCS IE++
Sbjct: 507 KLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEID 560
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 135/237 (56%), Gaps = 8/237 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G ++A+ +F+EM KT +P+E+T+ V+SAC+ ++
Sbjct: 167 IPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTN-VKPDESTMATVVSACAQSGSIEL 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+I+ S +V NA+I++Y KCG+V A ++ L+ KD+ISW+T+I G
Sbjct: 226 GRQVHSWINDHGFGSNLKIV-NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYT 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + K + V +
Sbjct: 285 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVV-V 343
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+ ++DMY + G ++ A S W A++ +H R + FD
Sbjct: 344 TNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFD 400
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + + W M G+A A+ ++ M + PN T +L +C+
Sbjct: 35 IPEPNQLIWNIMFRGHALSSDPVSALKLYVVM-ISLGLLPNFFTFPFLLKSCAKSKTFKE 93
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY------------- 106
GQ +H ++ +DL + V ++I+MY + G + A +VF+ ++
Sbjct: 94 GQQIHGHVLKLGFDLDL--YVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGY 151
Query: 107 ------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
KD++SW+ +ISG A G ++AL+LF M+ V PD+ T
Sbjct: 152 ASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMA 211
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
++SAC+ G ++ G + ++ + + ++D+Y + G +E A
Sbjct: 212 TVVSACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVETA 261
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/285 (41%), Positives = 185/285 (64%), Gaps = 2/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW TMI GY G EEA+ + M + + +P+ ATL+ VL+ACS+++ L G+
Sbjct: 233 KDVISWNTMIAGYVHNGHGEEAMRLHAVMFR-EGVKPDHATLIAVLTACSALALLRQGKS 291
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ I+ + L NA++ MY KCG+VG + VF L KD++SW+T+I+ A +G
Sbjct: 292 THA-IAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHG 350
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++ + LF M + G+ PDD+TF++++SAC H G VD L LF MS+ Y I P+ +HY
Sbjct: 351 KYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHY 410
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ RAG LE+A ++I++MP+EAE +VWG+LL AC++H N ++ + + LV
Sbjct: 411 ACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDS 470
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
S G + ++SN +A A W N++R +++ G+KK+ G SW E+
Sbjct: 471 ESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEI 515
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 146/316 (46%), Gaps = 44/316 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LS 59
MPKR+VVS+TTM+ G A RG A VF M P+ N++S + IS +
Sbjct: 137 MPKRNVVSYTTMVDGLARRGEVARAREVFDAM-------PDR----NLVSWAAMISGYVE 185
Query: 60 FGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G +V + + N+V A+I Y K GDV A ++F+ + KD+ISW+T+I+G
Sbjct: 186 NGMFVEA-TKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAG 244
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVY 174
NG G +A++L ++M GV PD T IA+++ACS L+ QG I KAM
Sbjct: 245 YVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAM---- 300
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAEWSVWGALLNACRIH 225
+ ++ MY + G + E+E + I A ++ G +
Sbjct: 301 -LESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALF 359
Query: 226 RNDEMFDPIRQEL-----------VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274
EM I ++ V K S+ F LMS+ +A + R E I D + R
Sbjct: 360 HEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSR 419
Query: 275 MGLKKKTGCSWIEVNP 290
G +K S+I+ P
Sbjct: 420 AGQLEK-ASSYIKDMP 434
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 28/206 (13%)
Query: 1 MPKRDVVSWTTMIGGY--AERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP RDVVSW ++ A R A +F E +++ + ++++ C + L
Sbjct: 41 MPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDV----VSWNSIIAGCLAHGDL 96
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+Y + +V+ NA++ ++ G A ++F + ++++S++T++ G
Sbjct: 97 DAAS---AYFAGAPKRNVATW--NAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDG 151
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
LA G +A ++F M PD V++ A+IS G V+ G +F + ++E
Sbjct: 152 LARRGEVARAREVFDAM------PDRNLVSWAAMIS-----GYVENG--MFVEATKLFEA 198
Query: 177 VPQTQHYAC--VVDMYGRAGLLEEAE 200
+P+ AC ++ Y + G +E A
Sbjct: 199 MPEKNVVACTAMITSYCKQGDVESAR 224
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW+ M+ GY + G EA+ +F M+ P++ LV VL+AC+ + L
Sbjct: 303 MPARNAVSWSAMVNGYVQAGDGREALGLFARMQ-ADGVRPDDTVLVGVLAACAQLGVLEQ 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ ++ ++ +G A+++MY KCG++ +A++VF ++ K++++W+T+I GLA
Sbjct: 362 GKWVHGYLKAN-NIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLA 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LFS M GV PDD+ FI + AC+H GLVD+G LF +M Y I P+
Sbjct: 421 MHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKI 480
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R GLL EA + +MP++ + +WGAL+ CR H+N E+ + + + +
Sbjct: 481 EHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKHWIE 540
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+ N +A + R A +IR +R G+ K GCS +E+
Sbjct: 541 LEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIK 589
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 9/198 (4%)
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
A + V +A + A G+ + + R SV N +I Y + G V A +F+
Sbjct: 242 AGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDARALFD 301
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162
+ ++ +SWS +++G G GR+AL LF+ M +GV PDD + +++AC+ G+++Q
Sbjct: 302 EMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQ 361
Query: 163 GLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G + KA + + T +VDMY + G ++ A + M E W ++
Sbjct: 362 GKWVHGYLKANNIRITVFLGT----ALVDMYAKCGEMQLAMEVFKVMK-EKNVLAWTTMI 416
Query: 220 NACRIH-RNDEMFDPIRQ 236
+H R E + Q
Sbjct: 417 KGLAMHGRGSEALELFSQ 434
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 183/293 (62%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D + W MI GY + G EA+ +F+ M ++ +P+E ++ LSA + +
Sbjct: 222 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSG-VDPDEVAIILALSAVAQLGTAES 280
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY+ + ++ VG A+I+MY KCG + A+ VFN + KD++ W+ +I+G A
Sbjct: 281 GRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYA 340
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G R+AL++FS + G++P D+TFI L++ACSH GLVD+G F++M Y IVP+
Sbjct: 341 MHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKI 400
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+EEA ++ M I + +W +LL ACR+H+N + I LV
Sbjct: 401 EHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVA 460
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A WE+ ++R ++ G++K+ GCS IEV ++
Sbjct: 461 GGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 513
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V +T+ I ++ RG A+++ EM + P TL + L AC L+ G
Sbjct: 94 PDPTTVFYTSAIHAHSSRGLHLAALALLSEM-LGRGLIPTSHTLSSSLPACH---GLALG 149
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI----------------------- 98
+ +H+Y + + L+ + V A++ MY + GD A
Sbjct: 150 RALHAY-AFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 208
Query: 99 --------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
++F+ + KD I W+ +I G +G +AL+LF M+ +GV PD+V I
Sbjct: 209 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 268
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SA + G + G L + + + ++DMY + G LE+A + + +
Sbjct: 269 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DK 327
Query: 211 EWSVWGALLNACRIHRND----EMFDPIRQE 237
+ VW A++N +H + EMF +R +
Sbjct: 328 DIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 358
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 183/293 (62%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D + W MI GY + G EA+ +F+ M ++ +P+E ++ LSA + +
Sbjct: 221 MPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSG-VDPDEVAIILALSAVAQLGTAES 279
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY+ + ++ VG A+I+MY KCG + A+ VFN + KD++ W+ +I+G A
Sbjct: 280 GRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYA 339
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G R+AL++FS + G++P D+TFI L++ACSH GLVD+G F++M Y IVP+
Sbjct: 340 MHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKI 399
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+EEA ++ M I + +W +LL ACR+H+N + I LV
Sbjct: 400 EHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVA 459
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A WE+ ++R ++ G++K+ GCS IEV ++
Sbjct: 460 GGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVY 512
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 41/271 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V +T+ I ++ RG A+++ EM + P TL + L AC L+ G
Sbjct: 93 PDPTTVFYTSAIHAHSSRGLHLAALALLSEM-LGRGLIPTSHTLSSSLPACH---GLALG 148
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI----------------------- 98
+ +H+Y + + L+ + V A++ MY + GD A
Sbjct: 149 RALHAY-AFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAK 207
Query: 99 --------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
++F+ + KD I W+ +I G +G +AL+LF M+ +GV PD+V I
Sbjct: 208 MGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILA 267
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SA + G + G L + + + ++DMY + G LE+A + + +
Sbjct: 268 LSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIG-DK 326
Query: 211 EWSVWGALLNACRIHRND----EMFDPIRQE 237
+ VW A++N +H + EMF +R +
Sbjct: 327 DIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 357
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W MI GY G EA+ +F EM A E TLV+ L+AC+ + AL
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV-GEVTLVSALTACAQLGALER 352
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHS +R + +S +G A+I+MY KCG V A++VF+ + +++ +W++ +SGLA
Sbjct: 353 GKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLA 411
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG GR L LF M GV P+ VTF+ ++ CS GLVD+G F +M + + I P
Sbjct: 412 MNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWL 471
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A FI MP+E VWGALLNA RIH+N E+ +L+
Sbjct: 472 EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMA 531
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + L+SN +A + W+ + +R+ ++ G+KK GCS IEV
Sbjct: 532 IESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEV 579
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ G+ A ++F+ + +D ++W+ +I+G G R+AL+LF M G
Sbjct: 273 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 332
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+VT ++ ++AC+ G +++G + + + T A ++DMY + G + A
Sbjct: 333 GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTA-LIDMYSKCGAVAAA 388
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G EEA +F EM E + +V++L+AC+ +L+
Sbjct: 355 MPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAA-IELDVIAVVSILAACAESGSLAL 413
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H ++ R LS S LV NA+++M+ KCG V A +F+ + KD++SW+ +I G
Sbjct: 414 GKRIHRHVRQR-KLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 472
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL+LF+ M G PD VT I ++SAC+H GLV++G F M T Y I PQ
Sbjct: 473 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 532
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 533 IEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELS 592
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + S G +A++SN +A A +W D K R +++ G +K G SWIE+N
Sbjct: 593 NLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 642
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW TM+ GYA+ G E+A +FQ M
Sbjct: 293 MPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP--------------------------- 325
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V S+ + V++ Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 326 GRNVVSW--------------STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACA 371
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M+ + D + +++++AC+ G + G + + + ++ T
Sbjct: 372 QKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQ-RKLSRST 430
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQ 236
++DM+ + G + A+ +E + W ++ +H + E+F ++Q
Sbjct: 431 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 490
Query: 237 ELVNKKGVSV 246
+ + V++
Sbjct: 491 QGFHPDAVTL 500
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL 74
YA A++VF ++ + + L+ L+A + L+ + H+++ +
Sbjct: 178 AYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAA----AGLTPVRGAHAHV-VKLGS 232
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
+ VGNA+I+ Y K + A +VF+ + +D++SW+T ++ + G A +F
Sbjct: 233 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 292
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
M D V++ ++ + G ++ LF+ M + ++ VV Y + G
Sbjct: 293 MPEK----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVS-----WSTVVSAYCKKG 343
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNAC 222
+E A +MP + W +++AC
Sbjct: 344 DMEMARVIFDKMPAK-NLVTWTIMVSAC 370
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 182/289 (62%), Gaps = 3/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW T+IGGY+ F E+ S+F +M + +PN T+ +L A +SIS+L G+
Sbjct: 676 KDIISWNTLIGGYSRNNFANESFSLFSDM--LLQFKPNTVTMTCILPAVASISSLERGRE 733
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y R L S NA+++MYVKCG + +A +F+ L K++ISW+ +I+G M+G
Sbjct: 734 IHAYALRRGFLEDS-YTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 792
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CG+ A+ LF M +GV PD +F A++ AC H GL +G F AM Y+I P+ +HY
Sbjct: 793 CGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHY 852
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ G L+EA FI MPIE + S+W +LL+ CRIHR+ ++ + + + +
Sbjct: 853 TCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEP 912
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A+RWE K++++I GL++ TGCSWIEV +
Sbjct: 913 ENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKV 961
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 1 MPKR--DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP R DV WT+++ YA+ G +E VS+F++M+ P+ + VL +S+ ++
Sbjct: 156 MPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG-VSPDAHAVSCVLKCIASLGSI 214
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ G+ +H + + L + V NA+I +Y +CG + A+QVF+ + +D ISW++ ISG
Sbjct: 215 TEGEVIHGLLE-KLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISG 273
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLI-- 165
NG +A+ LFS M G VT ++++ AC+ HG + GL+
Sbjct: 274 YFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWD 333
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
L S + E + +V MY + G + A MP + VW ++
Sbjct: 334 LESVQSGIDEALGSK-----LVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIM 382
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 14/285 (4%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K +V W ++GGYA+ EE++ +F++M + P+E L +L + +S
Sbjct: 369 MPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELG-ITPDEHALSCLLKCITCLSCAR 427
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G H Y+ + V NA+I+ Y K + A+ VF+ + ++D ISW++VISG
Sbjct: 428 DGLVAHGYL-VKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGC 486
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +A++LF M + G D T ++++ AC+ G ++ S ++ +
Sbjct: 487 TSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVV-HGYSVKTGLIGE 545
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR---Q 236
T ++DMY R M + S W A++ + + +FD + Q
Sbjct: 546 TSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVS-WTAMITS---YTRAGLFDKVAGLLQ 601
Query: 237 ELVNKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRRMGLKK 279
E+V G+ FA+ S + FAG + + + R G++K
Sbjct: 602 EMV-LDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEK 645
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 22/236 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD +SW + I GY G+ + AV +F +M ++ E + T+++VL AC+ +
Sbjct: 259 MHARDAISWNSTISGYFSNGWHDRAVDLFSKMW-SEGTEISSVTVLSVLPACAELGFELV 317
Query: 61 GQYVHSYISTR---YDL-----SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS- 111
G+ VH Y +DL + +G+ ++ MYVKCGD+G A +VF+ + K +
Sbjct: 318 GKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHV 377
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS-----ACSHGGLVDQGLIL 166
W+ ++ G A ++L LF M G+ PD+ L+ +C+ GLV G ++
Sbjct: 378 WNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLV 437
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
T Q ++ Y ++ +++ A MP + S W ++++ C
Sbjct: 438 KLGFGT------QCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTIS-WNSVISGC 486
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VVSWT MI Y G ++ + QEM +P+ + +VL + +L
Sbjct: 572 MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEM-VLDGIKPDVFAVTSVLHGFAGDESLKQ 630
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y + R + V NA++ MYV C ++ A VF+ + KD+ISW+T+I G +
Sbjct: 631 GKSVHGY-AIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYS 689
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++ LFS M++ P+ VT ++ A + +++G + A + + +
Sbjct: 690 RNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREI-HAYALRRGFLEDS 747
Query: 181 QHYACVVDMYGRAGLL 196
+VDMY + G L
Sbjct: 748 YTSNALVDMYVKCGAL 763
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 3/154 (1%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
V+ C +L + H+ + + +++G ++ Y+KCGD+G A VF+ + +
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPR 159
Query: 108 --DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
D+ W++++S A G ++ + LF M GV PD ++ + G + +G +
Sbjct: 160 VADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEV 219
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ + + + ++ +Y R G +E+A
Sbjct: 220 IHGLLEKL-GLGEACAVANALIALYSRCGCMEDA 252
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K++++SWT MI GY G ++AV++F++M + EP+ A+ +L AC +
Sbjct: 773 LTKKNLISWTIMIAGYGMHGCGKDAVALFEQM-RGSGVEPDTASFSAILYACCHSGLTAE 831
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISG 118
G + + Y + ++++ G++ A + + +M D W +++ G
Sbjct: 832 GWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHG 890
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G EEA +F EM E + +V++L+AC+ +L+
Sbjct: 283 MPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAA-IELDVIAVVSILAACAESGSLAL 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H ++ R LS S LV NA+++M+ KCG V A +F+ + KD++SW+ +I G
Sbjct: 342 GKRIHRHVRQR-KLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 400
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL+LF+ M G PD VT I ++SAC+H GLV++G F M T Y I PQ
Sbjct: 401 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 460
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 461 IEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELS 520
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + S G +A++SN +A A +W D K R +++ G +K G SWIE+N
Sbjct: 521 NLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELN 570
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 113/250 (45%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW TM+ GYA+ G E+A +FQ M
Sbjct: 221 MPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMP--------------------------- 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V S+ + V++ Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 254 GRNVVSW--------------STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACA 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M+ + D + +++++AC+ G + G + + + ++ T
Sbjct: 300 QKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQ-RKLSRST 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQ 236
++DM+ + G + A+ +E + W ++ +H + E+F ++Q
Sbjct: 359 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQ 418
Query: 237 ELVNKKGVSV 246
+ + V++
Sbjct: 419 QGFHPDAVTL 428
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 93/208 (44%), Gaps = 15/208 (7%)
Query: 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL 74
YA A++VF ++ + + L+ L+A + L+ + H+++ +
Sbjct: 106 AYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAA----AGLTPVRGAHAHV-VKLGS 160
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
+ VGNA+I+ Y K + A +VF+ + +D++SW+T ++ + G A +F
Sbjct: 161 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 220
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
M D V++ ++ + G ++ LF+ M + ++ VV Y + G
Sbjct: 221 MPEK----DTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVV-----SWSTVVSAYCKKG 271
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNAC 222
+E A +MP + W +++AC
Sbjct: 272 DMEMARVIFDKMPAK-NLVTWTIMVSAC 298
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV+W+TMI GY++ G E++ +F+ M+ T +PNE TLV VLSAC+ + +
Sbjct: 366 MPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQLGSDEL 424
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + +YI ++ L +++ +G+A+I+MY KCG V A VFN + K +++W+++I GLA
Sbjct: 425 GEQIGNYIESQ-TLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLA 483
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG A+ L+ M+ +G+ P++VTF+AL++AC+H GLVD+G+ F+ M + PQ
Sbjct: 484 LNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQV 543
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ ++G L EA FI +M +E +W LL+ACR H + E+ +LV
Sbjct: 544 EHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVA 603
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A A W D +IRD +R L+K + SWIE++
Sbjct: 604 LEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 652
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 112/207 (54%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R SW +MI YA G EA+++F +M + + A PN T+ V S C+ L
Sbjct: 266 MPRRTSASWNSMIACYAHGGEFREALTLFDQMLR-EGASPNAITITTVFSICAKTGDLDT 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ ++I R + + +V A++ MYVKC + A F+ + +D+++WST+I+G +
Sbjct: 325 GRRARAWI--REEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYS 382
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + ++SAC+ G + G + + + + +P T
Sbjct: 383 QNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIES--QTLPLT 440
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY + G + A + M
Sbjct: 441 SYLGSALIDMYTKCGHVARARSVFNRM 467
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y K GDV A ++F+ + + SW+++I+ A G R+AL LF M+ G
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGAS 303
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEA 199
P+ +T + S C+ G +D G +A + + E Q H A +++MY + ++EA
Sbjct: 304 PNAITITTVFSICAKTGDLDTGR---RARAWIREEDLQNVIVHTA-LMEMYVKCRAIDEA 359
Query: 200 EAFIREMPIE--AEWS--VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253
MP WS + G N R H + E+F+ R + N K V ++S
Sbjct: 360 RHEFDRMPRRDVVAWSTMIAGYSQNG-RPHESLELFE--RMKATNCKPNEVTLVGVLS 414
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 180/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW MIGGY + G +A+ VF EM+K P++ TLV+VLSAC+ + AL F
Sbjct: 205 MLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDF 264
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ ++ R ++ +GNA+I+MY KCG + A ++F+ + +D+ISWST+I G
Sbjct: 265 GRWIDRFVGWR-GRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSG 323
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +S M+ GV P++VTF+ L+SACSH GLVD+G+ LF M Y IVP+
Sbjct: 324 THGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKV 383
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY CV+D+ RAG L+EAE I MPIE VWGALL CRIH++ + + Q L+
Sbjct: 384 GHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLLE 443
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G++ ++ A R +DA ++ G+ K GCS IEV+ ++
Sbjct: 444 LDSEYTGSYVYIAGAKASVGRVDDAANCWLRMQHKGIIKDPGCSKIEVHNTV 495
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 37/265 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVF-QEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P +V SW +I + G E A++ F +++ PNE +++ AC+ + A++
Sbjct: 71 LPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSLIKACAGLEAIA 130
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH+ + + L + +G ++++MY K + A QVF+ + +D++SW+T++SG
Sbjct: 131 DGLKVHAVV-IKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGY 189
Query: 120 AMNGCGRQALQLFSLMI--------------------------------INGVFPDDVTF 147
+ G A ++F M+ + GV PDDVT
Sbjct: 190 CLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTL 249
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++++SAC+H G +D G + + + + A ++DMY + G +EEA M
Sbjct: 250 VSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNA-LIDMYAKCGTMEEARRIFDGMR 308
Query: 208 IEAEWSVWGALLNACRIHRN-DEMF 231
E + W ++ H + DE F
Sbjct: 309 -ERDVISWSTMICGSGTHGDADEAF 332
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+VSW++MI GYA G +EA+ +F +M + P+ +V VL AC+ + AL
Sbjct: 207 MLEKDIVSWSSMIQGYASNGLPKEALDLFFKM-LNEGFRPDCYAMVGVLCACARLGALEL 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + S + R + + ++G A+I+MY KCG + A +VF + KD++ W+ ISGLA
Sbjct: 266 GNWA-SNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLA 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + A LF M +G+ PD TF+ L+ AC+H GLVD+G F +M V+ + P+
Sbjct: 325 MSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEI 384
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA ++ MP+EA VWGALL CR+HR+ ++ + + ++L+
Sbjct: 385 EHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIA 444
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN ++ + +WEDA KIR + G+KK G SWIEV+
Sbjct: 445 LEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVD 493
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ + TMI G +E++ ++ M K + P+ T +L AC+ + G +
Sbjct: 72 NIFLFNTMIHGLVLNDSFQESIEIYHSMRK-EGLSPDSFTFPFLLKACARLLDSKLGIKL 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF------NMLAY------------ 106
H + + V +++++Y KCG + A +VF N+ A+
Sbjct: 131 HGLV-VKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGK 189
Query: 107 --------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
KD++SWS++I G A NG ++AL LF M+ G PD
Sbjct: 190 CREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYA 249
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++ AC+ G ++ G M E + ++DMY + G ++ A R M
Sbjct: 250 MVGVLCACARLGALELGNWASNLMDR-NEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGM 308
Query: 207 PIEAEWSVWGALLNA 221
+ + VW A ++
Sbjct: 309 R-KKDIVVWNAAISG 322
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 84/169 (49%), Gaps = 7/169 (4%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
++L ++VH+ + R L + + N V+ G+ + ++F+ ++ ++T
Sbjct: 20 FNSLKHLKHVHAAL-LRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I GL +N +++++++ M G+ PD TF L+ AC+ L+D L + K V
Sbjct: 79 MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACAR--LLDSKLGI-KLHGLVV 135
Query: 175 EIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++ + +V +YG+ G ++ A ++P E + W A+++
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISG 183
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W MI GY G EA+ +F EM A E TLV+ L+AC+ + AL
Sbjct: 294 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV-GEVTLVSALTACAQLGALER 352
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHS +R + +S +G A+I+MY KCG V A++VF+ + +++ +W++ +SGLA
Sbjct: 353 GKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLA 411
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG GR L LF M GV P+ VTF+ ++ CS GLVD+G F +M + + I P
Sbjct: 412 MNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWL 471
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A FI MP+E VWGALLNA RIH+N E+ +L+
Sbjct: 472 EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMA 531
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + L+SN +A + W+ + +R+ ++ G+KK GCS IEV
Sbjct: 532 IESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEV 579
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ G+ A ++F+ + +D ++W+ +I+G G R+AL+LF M G
Sbjct: 273 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 332
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+VT ++ ++AC+ G +++G + + + T A ++DMY + G + A
Sbjct: 333 GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTA-LIDMYSKCGAVAAA 388
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 186/294 (63%), Gaps = 4/294 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ VV+W MI GY + G E A+S+F+EM KT E PN T+ +LSAC+ + +LSFG
Sbjct: 372 PEKTVVAWNAMISGYTQNGSTETAISLFKEMMKT-EFTPNAVTITTILSACAQLGSLSFG 430
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH I + +L + V A+++MY KCG++ A Q+F+ ++ K+ ++W+T+I G +
Sbjct: 431 KWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGL 489
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G +AL+L++ M+ G P VTF++++ ACSH GLV +G +F M Y I P +
Sbjct: 490 HGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIE 549
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GR+G LE+A FI++MP+E +VWG LL AC IH++ ++ + L
Sbjct: 550 HYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFEL 609
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN--PSIF 293
SVG + L+SN ++ + A IR +++ L K GC+ IEVN P +F
Sbjct: 610 DPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVF 663
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V W TMI G + ++++ +F+EM + +T+ VL A + + L
Sbjct: 169 MPERDTVLWNTMINGLVKNCCFDDSIQLFREM-VADGVRVDSSTVTAVLPAAAELQELKV 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++ + + V +I++Y KCGDV A +F + D+I+++ +ISG
Sbjct: 228 GMGIQC-LALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFT 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALIS----------ACS-HGGLVDQGLILFKA 169
NG +++LF ++ +G T + LI ACS HG V G+IL
Sbjct: 287 ANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT 346
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ST + + Y + ++ A E P E W A+++
Sbjct: 347 VSTAFTAI------------YNKLNEIDLARHLFDESP-EKTVVAWNAMISG 385
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D++++ MI G+ G E +V +F+E+ + E + +T+V ++ S L
Sbjct: 272 RPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE-RVSSSTIVGLIPLHSPFGHLHLAC 330
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + + + ++ V A +Y K ++ +A +F+ K +++W+ +ISG N
Sbjct: 331 SIHGF-CVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQN 389
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A+ LF M+ P+ VT ++SAC+ G + G + + + + P
Sbjct: 390 GSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKS-ENLEPNIYV 448
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G + EA M E W ++ +H
Sbjct: 449 STALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMIFGYGLH 490
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK D+ + ++ G++ ++S++ + + P+ T ++ACS+ L
Sbjct: 70 VPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLML 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ HS I Y +V VG+A++++Y K V A +VF+ + +D + W+T+I+GL
Sbjct: 130 -LHAHSIIDG-YGSNV--FVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
N C ++QLF M+ +GV D T A++ A +
Sbjct: 186 KNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAA 220
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ V+W TMI GY G+ EA+ ++ EM P+ T ++VL ACS +
Sbjct: 472 MSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLG-YNPSAVTFLSVLYACSHAGLVGE 530
Query: 61 GQYVHSYISTRYDL 74
G+ + + +Y +
Sbjct: 531 GEEIFHNMVNKYRI 544
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 187/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRD+ +WT MIG AE G E++ F M + + P++ LV V+ AC+ + A++
Sbjct: 212 MWKRDLATWTVMIGALAESGVPVESLVFFDRM-RNQGIVPDKVALVTVVYACAKLGAMNK 270
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H+YI+ T Y L V ++G A+I+MY KCG V A +F+ + +++I+WS +I+
Sbjct: 271 AKAIHAYINGTGYSLDV--ILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAY 328
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G G +AL+LF +M+ +G+ P+ +TF++L+ ACSH GL+++G F +M Y + P
Sbjct: 329 GYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPD 388
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG L+EA I MP+E + +WGALL ACRIHR+ ++ + + + L+
Sbjct: 389 VKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLL 448
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A A +WED K RD + + GL+K G +WIEV ++
Sbjct: 449 KLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLY 502
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 115/232 (49%), Gaps = 10/232 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR SW+ ++GGYA+ G +F+E+ ++ A ++ + V+ AC + L
Sbjct: 111 MSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSG-APLDDYSAPVVIRACRDLKDLKC 169
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I+ + L + V +++MY +C V A Q+F + +D+ +W+ +I LA
Sbjct: 170 GRLIHC-ITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALA 228
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVY--EIV 177
+G ++L F M G+ PD V + ++ AC+ G +++ + ++ T Y +++
Sbjct: 229 ESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVI 288
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
T ++DMY + G +E A M + + W A++ A H E
Sbjct: 289 LGTA----MIDMYAKCGSVESARWIFDRMQVRNVIT-WSAMIAAYGYHGQGE 335
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--------------VGNAVIN 86
NE T + S CS + ++ S +S R V + V N ++
Sbjct: 34 NEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLY 93
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MYV+ G + A ++F+ ++ + SWS ++ G A G +F ++ +G DD +
Sbjct: 94 MYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYS 153
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQT----QHYAC--VVDMYGRAGLLEEAE 200
+I AC + L K ++ I + H+ C +VDMY R ++E+A
Sbjct: 154 APVVIRAC-------RDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAH 206
Query: 201 AFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257
+M A W+V GAL + + FD +R + G+ AL++ +A
Sbjct: 207 QIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQ-----GIVPDKVALVTVVYA 261
Query: 258 GA 259
A
Sbjct: 262 CA 263
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 182/292 (62%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VSW +I G+A +G E A+ + +M++ K +P T +VLSAC+SI AL
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQR-KNFQPTHFTYSSVLSACASIGALEQ 308
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+++ + L + +GN +++MY K G + A +VF+ L D++SW+T+++G A
Sbjct: 309 GKWVHAHM-IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCA 367
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++ L F M+ G+ P++++F+ +++ACSH GL+D+GL F+ M Y++ P
Sbjct: 368 QHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDV 426
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY VD+ GR GLL+ AE FIREMPIE +VWGALL ACR+H+N E+ +
Sbjct: 427 PHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFE 486
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G L+SN +A A RW D K+R ++ G+KK+ CSW+E+ ++
Sbjct: 487 LDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAV 538
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 12/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+V+WT +I G+++ +A+ +F +M + +PN TL ++L A S L
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLKASGSEHGLDP 207
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H++ +Y S VG+A+++MY +CG + A F+ + K +SW+ +ISG A
Sbjct: 208 GTQLHAFC-LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
G G AL L M P T+ +++SAC+ G ++QG + K+ +
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAF 326
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ T ++DMY +AG +++A+ + ++ + W +L C H
Sbjct: 327 IGNT-----LLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 2/182 (1%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ +L C+ + + G+ VH+++ + L ++ N ++NMY KCG + A +
Sbjct: 85 PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ + KDM++W+ +I+G + N R AL LF M+ G P+ T +L+ A
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+D G L A Y + +VDMY R G ++ A+ MP ++E S W AL+
Sbjct: 205 LDPGTQL-HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WNALI 262
Query: 220 NA 221
+
Sbjct: 263 SG 264
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 121/288 (42%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W MI GY G EA+ +F EM A E TLV+ L+AC+ + AL
Sbjct: 287 MPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV-GEVTLVSALTACAQLGALER 345
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHS +R + +S +G A+I+MY KCG V A++VF+ + +++ +W++ +SGLA
Sbjct: 346 GKWVHSCAHSR-GMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLA 404
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG GR L LF M GV P+ VTF+ ++ CS GLVD+G F +M + + I P
Sbjct: 405 MNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSNHGIDPWL 464
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A FI MP+E VWGALLNA RIH+N E+ +L+
Sbjct: 465 EHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVWGALLNASRIHKNVELGKYAMDKLMA 524
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + L+SN +A + W+ + +R+ ++ G+KK GCS IEV
Sbjct: 525 IESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAKGVKKVPGCSAIEV 572
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ G+ A ++F+ + +D ++W+ +I+G G R+AL+LF M G
Sbjct: 266 AMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAV 325
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+VT ++ ++AC+ G +++G + + + T A ++DMY + G + A
Sbjct: 326 GEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTA-LIDMYSKCGAVAAA 381
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D +S+ ++ G + G EEA VF++M+ EP+ AT+V+++ ACS ++AL G+
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQAC-NMEPDIATMVSLIPACSHLAALQHGKC 429
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + R L++ + N++I+MY KCG + ++ QVF+ + +D++SW+T+I+G ++G
Sbjct: 430 SHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G++A LF M G PDDVTFI LI+ACSH GLV +G F M+ Y I+P+ +HY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ R GLL+EA FI+ MP++A+ VWGALL ACRIH+N ++ + + +
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN F+ A R+++A ++R + G KK G SWIE+N S+
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+W M+ GYA G A++ +M+ PN +TLV++L + AL
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220
Query: 61 GQYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G +H+Y R L + L+G A+++MY KC + A +VF+ + ++ ++WS +I
Sbjct: 221 GTSIHAY-CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279
Query: 118 GLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACS-----HGGLVDQGLILFKAMS 171
G + +A LF M++ G+ F + + + C+ H G LI A S
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALI---AKS 336
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ + + ++ MY +AGL+ EA F E+ ++ S +GALL+ C
Sbjct: 337 GIHADLTASN---SLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 19/233 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ EA ++F++M + ++ + L C+S++ L
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325
Query: 61 GQYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G +H+ I+ DL+ SN ++++MY K G + A F+ +A KD IS+ ++S
Sbjct: 326 GTQLHALIAKSGIHADLTASN----SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLS 381
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMST 172
G NG +A +F M + PD T ++LI ACSH G G ++ + ++
Sbjct: 382 GCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL 441
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+T ++DMY + G ++ + +MP S W ++ IH
Sbjct: 442 ------ETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH 487
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 7/243 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D ++ +I Y+ G A+ +++ M + + A PN+ T VL ACS++ L
Sbjct: 60 IPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA-PNKYTFPFVLKACSALVDLRA 118
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + + L V A+I++Y++C G A VF + +D+++W+ +++G A
Sbjct: 119 GRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYA 177
Query: 121 MNGCGRQAL-QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIV 177
+G A+ L + G+ P+ T ++L+ + G + QG + + + + +
Sbjct: 178 NHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNE 237
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPIRQ 236
Q ++DMY + L A MP+ + + W AL+ + R E F+ +
Sbjct: 238 EQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIGGFVLCDRMTEAFNLFKD 296
Query: 237 ELV 239
LV
Sbjct: 297 MLV 299
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW TMI GY G +EA ++F M K + P++ T + +++ACS ++
Sbjct: 469 MPARDVVSWNTMIAGYGIHGLGKEATTLFLGM-KNQGFAPDDVTFICLIAACSHSGLVTE 527
Query: 61 GQYVHSYISTRY 72
G++ ++ +Y
Sbjct: 528 GKHWFDTMTHKY 539
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 188/290 (64%), Gaps = 4/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D +S+ ++ G + G EEA VF++M+ EP+ AT+V+++ ACS ++AL G+
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQAC-NMEPDIATMVSLIPACSHLAALQHGKC 429
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + R L++ + N++I+MY KCG + ++ QVF+ + +D++SW+T+I+G ++G
Sbjct: 430 SHGSVIIR-GLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G++A LF M G PDDVTFI LI+ACSH GLV +G F M+ Y I+P+ +HY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ R GLL+EA FI+ MP++A+ VWGALL ACRIH+N ++ + + ++ K G
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR-IIQKLG 607
Query: 244 VS-VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN F+ A R+++A ++R + G KK G SWIE+N S+
Sbjct: 608 PEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSL 657
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+W M+ GYA G A++ +M+ PN +TLV++L + AL
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220
Query: 61 GQYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G +H+Y R L + L+G A+++MY KC + A +VF+ + ++ ++WS +I
Sbjct: 221 GTSIHAY-CLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279
Query: 118 GLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACS-----HGGLVDQGLILFKAMS 171
G + +A LF M++ G+ F + + + C+ H G LI A S
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALI---AKS 336
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ + + ++ MY +AGL+ EA F E+ ++ S +GALL+ C
Sbjct: 337 GIHADLTASN---SLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGC 383
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 113/233 (48%), Gaps = 19/233 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ EA ++F++M + ++ + L C+S++ L
Sbjct: 266 MPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHM 325
Query: 61 GQYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G +H+ I+ DL+ SN ++++MY K G + A F+ +A KD IS+ ++S
Sbjct: 326 GTQLHALIAKSGIHADLTASN----SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLS 381
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMST 172
G NG +A +F M + PD T ++LI ACSH G G ++ + ++
Sbjct: 382 GCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL 441
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+T ++DMY + G ++ + +MP S W ++ IH
Sbjct: 442 ------ETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS-WNTMIAGYGIH 487
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 114/243 (46%), Gaps = 7/243 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D ++ +I Y+ G A+ +++ M + + A PN+ T VL ACS++ L
Sbjct: 60 IPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA-PNKYTFPFVLKACSALVDLRA 118
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + + L V A+I++Y++C G A VF + +D+++W+ +++G A
Sbjct: 119 GRTI-HAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYA 177
Query: 121 MNGCGRQAL-QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIV 177
+G A+ L + G+ P+ T ++L+ + G + QG + + + + +
Sbjct: 178 NHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNE 237
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPIRQ 236
Q ++DMY + L A MP+ + + W AL+ + R E F+ +
Sbjct: 238 EQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVT-WSALIGGFVLCDRMTEAFNLFKD 296
Query: 237 ELV 239
LV
Sbjct: 297 MLV 299
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW TMI GY G +EA ++F M K + P++ T + +++ACS ++
Sbjct: 469 MPARDVVSWNTMIAGYGIHGLGKEATTLFLGM-KNQGFAPDDVTFICLIAACSHSGLVTE 527
Query: 61 GQYVHSYISTRY 72
G++ ++ +Y
Sbjct: 528 GKHWFDTMTHKY 539
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 184/290 (63%), Gaps = 5/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RDV SWT ++ YA+ E+A+ F+ M + + PN+ATL LS CS ++ L
Sbjct: 525 LKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENK-RPNDATLATSLSVCSDLACLGS 583
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +HSY I + ++ S++V +A+++MYVKCG++ A +F+ D++ W+T+I G
Sbjct: 584 GLQLHSYTIKSGWN---SSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGY 640
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL+ F MI G PD++TF+ ++SACSH GL+D+G FK +S+VY I P
Sbjct: 641 AQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPT 700
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ +AG L EAE+ I EMP+ + S+W +L ACR+H N E+ + ++L
Sbjct: 701 LEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLF 760
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A RW D K+R + G+KK+ GCSWIE+N
Sbjct: 761 ESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEIN 810
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 10/208 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D+ SW T++ G+ CE + +F+E+ + N+ T V +L C+S+ L F
Sbjct: 424 MQGPDIASWNTLLSGFYSGNNCEHGLRIFKEL-ICEGVLANKYTYVGILRCCTSLMDLRF 482
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G VH+ + + D VS ++ ++MYV+ G A VF+ L +D+ SW+ V+S
Sbjct: 483 GCQVHACVLKSGFQGDYDVSKML----LDMYVQAGCFTNARLVFDRLKERDVFSWTVVMS 538
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G +A++ F M+ P+D T +S CS + GL L T+
Sbjct: 539 TYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHS--YTIKSGW 596
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+ + +VDMY + G L +AE E
Sbjct: 597 NSSVVSSALVDMYVKCGNLADAEMLFDE 624
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV + MI + EA +F +M +PN+ T V + S ++ + +
Sbjct: 327 DVVHCSLMISCFDRHDMAPEAFDIFMQMSDMG-VKPNQYTFVGLAIVASRTGDVNLCRSI 385
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H++I + S + V +A++ MYVK G V AI F+++ D+ SW+T++SG
Sbjct: 386 HAHI-VKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNN 444
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTVYEIV 177
L++F +I GV + T++ ++ C+ L+D +L Y++
Sbjct: 445 CEHGLRIFKELICEGVLANKYTYVGILRCCT--SLMDLRFGCQVHACVLKSGFQGDYDVS 502
Query: 178 PQTQHYACVVDMYGRAGLLEEAE 200
++DMY +AG A
Sbjct: 503 KM------LLDMYVQAGCFTNAR 519
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C++ AL G+ +H+ + R + ++++NMY KCG + A VF+ + ++D
Sbjct: 67 LQGCAASRALRRGKALHARL-LRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRD 125
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI-LF 167
+++W+ ++S + G AL+LF+ M GV P+ A + AC+ G D G
Sbjct: 126 VVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGS--DLGFTPQV 183
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
A + E + + +V+ Y G ++ AE + + P+ ++ S W ALLN
Sbjct: 184 HAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVS-WNALLN 235
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 129/298 (43%), Gaps = 35/298 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+WT M+ G A+ +F EM + + PN L L AC+ S L F
Sbjct: 121 MPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSE-EGVVPNGFALAAALKACTVGSDLGF 179
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH+ + + + V ++++ YV CG+V +A + + +SW+ +++ A
Sbjct: 180 TPQVHAQ-AVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYA 238
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+G + + +F ++ +G T ++ C GL GL++ + + T
Sbjct: 239 RDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRV 298
Query: 176 IVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIHRND---EMF 231
+ C+++MY + E+A E F R I+ V +L+ +C R+D E F
Sbjct: 299 L------NNCLIEMYSKCLSAEDAYEVFAR---IDEPDVVHCSLMISC-FDRHDMAPEAF 348
Query: 232 DPIRQELVNKKGVSVGTFALMSNTFAG----ADRWEDAN---KIRDEIRRMGLKKKTG 282
D Q ++ GV + TF G A R D N I I + G + G
Sbjct: 349 DIFMQ--MSDMGVKPNQY-----TFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKG 399
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV W MIGG + ++A+++FQEM+ T +P+E T+++ LSACS + AL
Sbjct: 256 MEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQ-TSNTDPDEITMIHCLSACSQLGALDV 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI ++ LS++ +G ++++MY KCG++ A+ VF+ + ++ ++++ +I GLA
Sbjct: 315 GIWIHRYIE-KHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLA 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F+ MI G+ PD++TFI L+SAC HGG++ G F M + + + PQ
Sbjct: 374 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 433
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+ +VD+ GRAGLLEEA+ + MP+EA+ +VWGALL CR+H N ++ + ++L+
Sbjct: 434 KHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLFGCRMHGNVKLGEKAAKKLLE 493
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+ + A+ WEDA + R + G++K GCS IEVN
Sbjct: 494 LDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 542
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 114/211 (54%), Gaps = 16/211 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD+VSW +I GY + G E+A+ V++ ME ++ +P++ T++ ++S+C+ + L+ G
Sbjct: 143 PVRDLVSWNCLINGYKKIGEGEKAIEVYKVME-SEGVKPDDVTMIGLVSSCAMLGDLNRG 201
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------KD 108
+ + Y+ L ++ + NA+++M+ KCGD+ A ++F+ L KD
Sbjct: 202 KEFYEYVKAN-GLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKD 260
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
++ W+ +I G + AL LF M + PD++T I +SACS G +D G+ + +
Sbjct: 261 VVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHR 320
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ + + +VDMY + G + EA
Sbjct: 321 YIEK-HSLSLNVALGTSLVDMYAKCGNISEA 350
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 107/199 (53%), Gaps = 8/199 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNEATLVNVLSACSSISALSFGQ 62
+ SW I G++E ++AV +++M + E+ P+ T + C+ + S G
Sbjct: 42 NAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGH 101
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ ++ + L + + V NA I+M+ CG++ A +VF+ +D++SW+ +I+G
Sbjct: 102 MILGHV-FKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKI 160
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST--VYEIVPQT 180
G G +A++++ +M GV PDDVT I L+S+C+ G +++G ++ + + +P
Sbjct: 161 GEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLA 220
Query: 181 QHYACVVDMYGRAGLLEEA 199
++DM+ + G + EA
Sbjct: 221 N---ALMDMFSKCGDIHEA 236
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 176/292 (60%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW ++I GY++ G EA+ V+ M A PN+ T V++L+A S + AL
Sbjct: 403 LPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQ 462
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H + + L V +++MY KCG + A+ +F + ++ +SW+ +IS
Sbjct: 463 GMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHG 521
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A++LF M GV PD +TF++L+SACSH GLVD+G F+ M Y I P
Sbjct: 522 LHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSL 581
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAG LE+A F++ MP+ + SVWGALL ACRIH N E+ + L+
Sbjct: 582 KHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLK 641
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ +VG + L+SN +A WE +++R R GLKK G S IEV+ I
Sbjct: 642 VESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKI 693
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 16/232 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW +++ + + A+ V+ +M P+ TLV++ S + +
Sbjct: 301 MKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVV-PDLLTLVSLASVAAELGNFLS 359
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H +++ R +GNA+I+MY K G + A +VF L KD+ISW+++I+G +
Sbjct: 360 SRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYS 419
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV------ 173
NG +A+ ++S M +G P+ T++++++A S G + QG+ KA +
Sbjct: 420 QNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGM---KAHGQLIKNFLY 476
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++I T C+VDMYG+ G L +A + E+P ++ S W A+++ +H
Sbjct: 477 FDIFVST----CLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCHGLH 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 110/228 (48%), Gaps = 17/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+ +W MI G+ G EA+ VF EM + K + T+ ++L C + +
Sbjct: 200 MMIRDIGTWNAMISGFYLNGKVAEALEVFDEM-RFKSVSMDSVTISSLLPICVQLDDIIS 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H Y + + L V NA+INMY K G++ A +FN + +D++SW+++++
Sbjct: 259 GVLIHVY-AIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFE 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL +++ M GV PD +T ++L S + G F + +++ V +
Sbjct: 318 QNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG-------NFLSSRSIHGFVTRR 370
Query: 181 QHYA-------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++DMY + G ++ A +P++ S W +L+
Sbjct: 371 CWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVIS-WNSLITG 417
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 14/222 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV +W +MI YA G AV F E T + + T V+ AC ++ G+
Sbjct: 104 KDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRK 160
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + + + + I+ Y + G V +A +F+ + +D+ +W+ +ISG +NG
Sbjct: 161 VHCLV-LKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNG 219
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH- 182
+AL++F M V D VT +L+ C + G+++ VY I +
Sbjct: 220 KVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLI-----HVYAIKLGLEFD 274
Query: 183 -YAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ C +++MY + G L AE +M + S W +LL A
Sbjct: 275 LFVCNALINMYAKFGELRSAETIFNQMKVRDIVS-WNSLLAA 315
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 14/173 (8%)
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-P 142
+IN Y GD+ A F+ + KD+ +W+++IS A G A+ F+ +
Sbjct: 81 LINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQS 140
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAE 200
D TF +I AC G +D G K V ++ + Y A + Y R G + A
Sbjct: 141 DHYTFPPVIRAC---GNLDDGR---KVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLAC 194
Query: 201 AFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQELVNKKGVSVGTF 249
M I + W A+++ ++ E+FD +R + V+ V++ +
Sbjct: 195 NLFDNMMIR-DIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSL 246
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V+W +I Y + G +EA+S F +M + + PN T V+VL A + ++A G
Sbjct: 596 KDEVTWNVIIAAYMQNGHAKEAISSFHQM-RLENFHPNSVTFVSVLPAAAYLAAFREGMA 654
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ I LS + LVGN++I+MY KCG + + ++FN + +KD +SW+ ++SG A++G
Sbjct: 655 FHACIIQMGFLS-NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ LFSLM + V D V+F++++SAC H GLV++G +F +MS Y I P +HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHY 773
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAGL +E FI+ MP+E + VWGALL +CR+H N ++ + LV +
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ F ++S+ +A + RW DA K R ++ +GLKK GCSW+E+ +
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 122/219 (55%), Gaps = 5/219 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W+ +I + G+ EEA+S+FQEM+ K +PN TL+++L AC+ +S L G+
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKS 451
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + + D+ G A+++MY KCG A+ FN ++ +D+++W+++I+G A G
Sbjct: 452 IHCF-TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQH 182
A+ +F + ++ + PD T + ++ AC+ +DQG + + + +E ++
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G L AE + + W ++ A
Sbjct: 571 --ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 5/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+V+W ++I GYA+ G A+ +F ++ + P+ T+V V+ AC+ ++ L
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL-RLSAINPDAGTMVGVVPACALLNDLDQ 549
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G +H I + V NA+I+MY KCG + A +FN + KD ++W+ +I+
Sbjct: 550 GTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG ++A+ F M + P+ VTF++++ A ++ +G+ F A +
Sbjct: 609 MQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSN 667
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G L+ +E EM + S W A+L+ +H
Sbjct: 668 TLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS-WNAMLSGYAVH 712
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVV+W MI G ++ EAV F+ M+ EP+ +L+N+ +S +
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNLFPGICKLSNIEL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y+ R S+ V N +I++Y KCGDV +A +VF+ + +D +SW T+++G A
Sbjct: 249 CRSIHGYVFRR---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYA 305
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NGC + L+LF M + V + V+ ++ A + +++G
Sbjct: 306 HNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 6/221 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW TM+ GYA G E + +F +M K N+ + V+ A + L
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSAFLAAAETIDLEK 347
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H + R D + LV ++ MY KCG+ A Q+F L +D+++WS +I+ L
Sbjct: 348 GKEIHGCALQQRIDSDI--LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +AL LF M + P+ VT ++++ AC+ L+ G + + ++
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI-HCFTVKADMDSD 464
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+V MY + G A M + W +L+N
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLIN 504
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 22/244 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P + W +MI Y EA+ ++ M + K EP++ T VL AC+ L G
Sbjct: 90 PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKACTGALNLQEG 148
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ H I R L +G +++MY K GD+ A +VF+ + +D+++W+ +I+GL+
Sbjct: 149 VWFHGEIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEI 176
+ +A+ F M + GV P V+ + L ++ G + + S+
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS- 266
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-----NACRIHRNDEMF 231
++D+Y + G ++ A +M ++ + WG ++ N C + E+F
Sbjct: 267 -------NGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVL-ELF 317
Query: 232 DPIR 235
D ++
Sbjct: 318 DKMK 321
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 48 VLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
+LS+C ++ L +H+ I ++ S+++L IN+Y +A VF+
Sbjct: 38 LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHL-----INLYSLFHKCDLARSVFDST 89
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
I W+++I + +AL+++ M+ G+ PD TF ++ AC+ G L Q
Sbjct: 90 PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT-GALNLQEG 148
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ F + A +VDMY + G L+ A +MP + + W A++
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMI 202
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW M+ GYA G + A+++F M+++ + + + + V+VLSAC +
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES-QVQIDSVSFVSVLSACRHAGLVEE 752
Query: 61 GQYVHSYISTRYDL 74
G+ + +S +Y +
Sbjct: 753 GRKIFHSMSDKYHI 766
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 178/286 (62%), Gaps = 1/286 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +D+VSW +IGGY R EA+ +F EM E P+E T++++LSAC+ + L G
Sbjct: 231 PMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGEC-PDEVTMLSLLSACADLGDLESG 289
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VH+ I +S L+GNA+++MY KCG++G A++VF ++ KD++SW++VISGLA
Sbjct: 290 EKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAF 349
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G ++L LF M + V PD+VTF+ +++ACSH G VD+G F M Y+I P +
Sbjct: 350 HGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIR 409
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
H CVVDM GRAGLL+EA FI M IE VW +LL AC++H + E+ ++L+
Sbjct: 410 HCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELAKRANEQLLRM 469
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+G G + L+SN +A W+ A +R + G+ K G S++E
Sbjct: 470 RGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 43/198 (21%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+ +I GYA+RG A +F EM K
Sbjct: 170 KGDVVAWSALIAGYAQRGDLSVARKLFDEMPK---------------------------- 201
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+LV N +I +Y K G++ A ++F+ KD++SW+ +I G +
Sbjct: 202 --------------RDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVL 247
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
R+AL+LF M G PD+VT ++L+SAC+ G ++ G + + + + T
Sbjct: 248 RNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTL 307
Query: 182 HYACVVDMYGRAGLLEEA 199
+VDMY + G + +A
Sbjct: 308 LGNALVDMYAKCGNIGKA 325
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D W T I G ++ AV+++ +M++ + +P+ T VL AC+ + ++
Sbjct: 67 IPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQ-RSVKPDNFTFPFVLKACTKLFWVNT 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + R + +V N ++ + KCGD+ +A +F+ D+++WS +I+G A
Sbjct: 126 GSAVHGRV-LRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYA 184
Query: 121 MNGCGRQALQLFSLM 135
G A +LF M
Sbjct: 185 QRGDLSVARKLFDEM 199
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ GY + G EEA VF++M+ EP+ AT+V+++ ACS ++AL
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPACSHLAALQH 344
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R L+ + NA+I+MY KCG + ++ QVFNM+ +D++SW+T+I+G
Sbjct: 345 GRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A LF M G PD VTFI L+SACSH GLV +G F M Y + P+
Sbjct: 404 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 463
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R G L+EA FI+ MP+ A+ VW ALL ACR+++N ++ + + +
Sbjct: 464 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN ++ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 524 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 13/230 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ +A +F+ M + ++ + L AC+S+ L
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ + + GN++++MY K G + AI +F+ +A KD +S+S ++SG
Sbjct: 244 GEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG +A +F M V PD T ++LI ACSH G G ++ + +++
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS--- 359
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+T ++DMY + G ++ + MP + W ++ IH
Sbjct: 360 ---ETSICNALIDMYAKCGRIDLSRQVFNMMP-SRDIVSWNTMIAGYGIH 405
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD+V+W M+ GYA G AV+ M+ + PN +TLV +L + AL+
Sbjct: 71 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130
Query: 60 FGQYVHSYI---------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
G VH+Y +++ L+ L+G A+++MY KCG + A +VF+ + ++ +
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQG--LILF 167
+WS +I G + QA LF M+ G+ F + + + AC+ + G L
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
A S V+ + ++ MY +AGL+++A A EM ++
Sbjct: 251 LAKSGVHADLTAGN---SLLSMYAKAGLIDQAIALFDEMAVK 289
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
PN T L ACS+++ G+ +H + + L V A+++MYVKC + A
Sbjct: 8 PNNYTFPFALKACSALADHHCGRAIHRH-AIHAGLQADLFVSTALLDMYVKCACLPDAAH 66
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQAL-QLFSL-MIINGVFPDDVTFIALISACSHG 157
+F + +D+++W+ +++G A +G A+ L S+ M ++ + P+ T +AL+ +
Sbjct: 67 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 126
Query: 158 GLVDQGL---------ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
G + QG L ++ ++ ++DMY + G L A MP
Sbjct: 127 GALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 186
Query: 209 EAEWSVWGALL 219
E + W AL+
Sbjct: 187 RNEVT-WSALI 196
>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 611
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 179/288 (62%), Gaps = 5/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K D+V+W MI G+ E ++A+ F+EM++ + + ++ T+ +L C L +
Sbjct: 327 MDKSDIVTWNAMILGFVELDLGKQAIECFREMQRM-DIKNDQTTISTILPVCD----LQY 381
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+Y+ LS V NAVI+MY KCG V A +F + KD++SW+T+I G
Sbjct: 382 GNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFG 441
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G+ AL+L MI++G+FP+ TF +++SACSH GLVD+G LF++M+ Y I P+
Sbjct: 442 MHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRM 501
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VDM RAG +A FI +MP+E + S+WGALL ACR ++N + ++L+
Sbjct: 502 EHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIR 561
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + +SN +A A RW+DA ++R EI GL K +G S IE
Sbjct: 562 MEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSLIET 609
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 112/238 (47%), Gaps = 10/238 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++SWTT+I Y++ G + ++ VFQ+M + P+ L +VL +C I AL G+ +
Sbjct: 227 NIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEI 286
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H Y + + G A++ MY KCG + AI VF ++ D+++W+ +I G
Sbjct: 287 HGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELD 346
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISAC--SHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G+QA++ F M + D T ++ C +G + + +S+V +
Sbjct: 347 LGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPIHAYVRKSITLSSVVTV----- 401
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ V+ MY + G + A MP + W ++ +H + + + +E++
Sbjct: 402 -WNAVIHMYCKCGCVRSAYTIFCSMP-NKDVVSWNTMIGGFGMHGHGQAALKLLKEMI 457
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ +V +WT + G Y G ++ V + M K + P+ VL AC+ +
Sbjct: 56 MPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFM-KYSDVLPDNYVFPKVLRACTQLLWFEG 114
Query: 61 GQYVHSYISTRYDLSV----SNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G ++H D+ V SNL V N++I+MYVKCG+ A VF + +D+ SW+++
Sbjct: 115 GIWIHK------DVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSM 168
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
ISG NG A++L + M ++G PD VT+ L+ A G D+ + K +
Sbjct: 169 ISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQIEQ--- 225
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
P + ++ Y + G + + ++M I
Sbjct: 226 --PNIISWTTLISSYSKIGEHDMSLRVFQDMIIR 257
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 44/223 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+ SW +MI GY G + AV + M + EP+ T
Sbjct: 157 MEERDLFSWNSMISGYVSNGLADLAVELLNCM-RLDGFEPDVVTW--------------- 200
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +++ Y + G A +V + ++ISW+T+IS +
Sbjct: 201 ---------------------NTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYS 239
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILF---KAMSTVYEI 176
G +L++F MII V PD +++ +C H G + G + M T
Sbjct: 240 KIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMET--NT 297
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
V + A ++ MY + G +++A + E+ +++ W A++
Sbjct: 298 VFYSSAGAALLTMYAKCGRIQDA-INVFELMDKSDIVTWNAMI 339
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 76/174 (43%), Gaps = 3/174 (1%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L CS++ +L G+ +H I+ + +I MY C + A ++F+ +
Sbjct: 1 MLQLCSNLKSLHAGKQIHQQITVS-GWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQP 59
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
++ +W+ + +G + +Q + M + V PD+ F ++ AC+ + G+ +
Sbjct: 60 NVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIH 119
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
K + V Q ++DMY + G A EM E + W ++++
Sbjct: 120 KDV-IVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEME-ERDLFSWNSMISG 171
>gi|297597140|ref|NP_001043491.2| Os01g0600400 [Oryza sativa Japonica Group]
gi|53791399|dbj|BAD53436.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|53793537|dbj|BAD52986.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|222618803|gb|EEE54935.1| hypothetical protein OsJ_02490 [Oryza sativa Japonica Group]
gi|255673429|dbj|BAF05405.2| Os01g0600400 [Oryza sativa Japonica Group]
Length = 348
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 184/293 (62%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RDV SWT ++ YA+ E+A+ F+ M + + PN+ATL LS CS ++ L
Sbjct: 48 LKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENK-RPNDATLATSLSVCSDLACLGS 106
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +HSY I + ++ SV V +A+++MYVKCG++ A +F+ D++ W+T+I G
Sbjct: 107 GLQLHSYTIKSGWNSSV---VSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGY 163
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL+ F MI G PD++TF+ ++SACSH GL+D+G FK +S+VY I P
Sbjct: 164 AQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPT 223
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ +AG L EAE+ I EMP+ + S+W +L ACR+H N E+ + ++L
Sbjct: 224 LEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLF 283
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN +A RW D K+R + G+KK+ GCSWIE+N +
Sbjct: 284 ESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKL 336
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 58 LSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
L FG VH+ + + D VS ++ ++MYV+ G A VF+ L +D+ SW+
Sbjct: 3 LRFGCQVHACVLKSGFQGDYDVSKML----LDMYVQAGCFTNARLVFDRLKERDVFSWTV 58
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
V+S A G +A++ F M+ P+D T +S CS + GL L T+
Sbjct: 59 VMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSY--TIK 116
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+ + +VDMY + G L +AE E EW+
Sbjct: 117 SGWNSSVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNT 158
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 187/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+D V+W MI GYA+ G EEA+ +FQ+M + A P++ TL+ +LSAC+SI AL
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA-PDQITLIGILSACASIGALDL 347
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V Y S R VG A+++MY KCG + A +VF + K+ +SW+ +IS LA
Sbjct: 348 GKQVEIYASER-GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALA 406
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++AL LF M+ G V P+D+TF+ ++SAC H GLVD+G LF MS+ + +VP
Sbjct: 407 FHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVP 466
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY+C+VD++ RAG LEEA F+ MP + + + GALL AC+ +N ++ + + + L
Sbjct: 467 KIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLL 526
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + + S +A RW+D+ ++R +++ G+ K GCSWI++N +
Sbjct: 527 LELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQL 580
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 137/249 (55%), Gaps = 18/249 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+VSW +MI GY++ EAV +F+EM + +PNE +LV+VL AC + L G
Sbjct: 190 QKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-FQPNEMSLVSVLGACGELGDLKLGT 248
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+V ++ ++++ +G+A+I+MY KCGD+ A ++F+ + KD ++W+ +I+G A N
Sbjct: 249 WVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQN 307
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A++LF M ++ PD +T I ++SAC+ G +D G EI +
Sbjct: 308 GMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG--------KQVEIYASERG 359
Query: 183 Y-------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ +VDMY + G L+ A MP + E S W A+++A H + +
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVS-WNAMISALAFHGQAQEALALF 418
Query: 236 QELVNKKGV 244
+ ++N+ G
Sbjct: 419 KSMMNEGGT 427
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
+PN T + ACS++ A+ G+ H + R L V +++I MY +CG +G A
Sbjct: 124 KPNNLTYPFLFIACSNLLAVENGRMGHCSV-IRRGLDEDGHVSHSLITMYARCGKMGDAR 182
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+ ++ KD++SW+++ISG + +A+ LF M+ G P++++ ++++ AC G
Sbjct: 183 KVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
Query: 159 LVDQGLILFKAMSTVYEIVPQ---TQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
+ G + V E V + T +Y + ++ MYG+ G L A M + +
Sbjct: 243 DLKLG-------TWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK-KKDK 294
Query: 213 SVWGALL 219
W A++
Sbjct: 295 VTWNAMI 301
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ GY + G +EA VF++M+ +P+ AT+V+++ ACS ++AL
Sbjct: 396 MVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQAC-NVQPDVATMVSLIPACSHLAALQH 454
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R ++ + NA+I+MY KCG + ++ Q+F+++ +D++SW+T+I+G
Sbjct: 455 GKCGHGSVIVR-GIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYG 513
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A LF M PDDVTFI LISACSH GLV +G F M+ Y I P+
Sbjct: 514 IHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRM 573
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ R G L+EA FI+ MP++A+ VWGALL ACR+H+N ++ + +
Sbjct: 574 EHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQ 633
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN F+ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 634 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSL 685
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 114/225 (50%), Gaps = 3/225 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ V+W+ ++GG+ G EA S+F++M + ++ + L AC+++S L
Sbjct: 294 MAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCL 353
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ + L GN++++MY K G + A +F+ + KD +S+S ++SG
Sbjct: 354 GKQLHALLA-KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYV 412
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A ++F M V PD T ++LI ACSH + G ++ V I +T
Sbjct: 413 QNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASET 471
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G ++ + MP S W ++ IH
Sbjct: 472 SICNALIDMYAKCGRIDLSRQIFDVMPARDIVS-WNTMIAGYGIH 515
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 122/266 (45%), Gaps = 53/266 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+W M+ GYA G + ++ M+ + PN +TLV +L + ALS
Sbjct: 190 MPARDVVAWNAMLAGYALHGKYSDTIACLLLMQD--DHAPNASTLVALLPLLAQHGALSQ 247
Query: 61 GQYVHSY---ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ VH+Y + +D LVG A+++MY KCG + A +VF +A ++ ++WS ++
Sbjct: 248 GRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVG 307
Query: 118 GLAMNGCGR-------------QAL-------------------------QLFSLMIING 139
G + CGR Q L QL +L+ +G
Sbjct: 308 GFVL--CGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSG 365
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ D +L+S + GL+DQ LF M +V T Y+ +V Y + G +EA
Sbjct: 366 LHTDLTAGNSLLSMYAKAGLIDQATTLFDQM-----VVKDTVSYSALVSGYVQNGKADEA 420
Query: 200 EAFIREMP---IEAEWSVWGALLNAC 222
R+M ++ + + +L+ AC
Sbjct: 421 FRVFRKMQACNVQPDVATMVSLIPAC 446
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 17/227 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + + +I Y+ RG A+ +++ + + + +PN T VL ACS++ L
Sbjct: 89 IPAPGIHDYNALIRAYSLRG-PALALRLYRSLRRRRLPQPNNYTFPFVLKACSALLDLRS 147
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH + + R L V A++++Y KC A VF + +D+++W+ +++G A
Sbjct: 148 ARAVHCH-AARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYA 206
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G + LM + P+ T +AL+ + G + QG + Y + +
Sbjct: 207 LHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVH-----AYSVRACS 260
Query: 181 QHY--------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
H ++DMY + G L A M + E + W AL+
Sbjct: 261 LHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVT-WSALV 306
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ GY + G EEA VF++M+ EP+ AT+V+++ ACS ++AL
Sbjct: 286 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPACSHLAALQH 344
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R L+ + NA+I+MY KCG + ++ QVFNM+ +D++SW+T+I+G
Sbjct: 345 GRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A LF M G PD VTFI L+SACSH GLV +G F M Y + P+
Sbjct: 404 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 463
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R G L+EA FI+ MP+ A+ VW ALL ACR+++N ++ + + +
Sbjct: 464 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN ++ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 524 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 12/212 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ +A +F+ M + ++ + L AC+S+ L
Sbjct: 184 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 243
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ + + GN++++MY K G + AI +F+ +A KD +S+S ++SG
Sbjct: 244 GEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 302
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG +A +F M V PD T ++LI ACSH G G ++ + +++
Sbjct: 303 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLAS--- 359
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+T ++DMY + G ++ + MP
Sbjct: 360 ---ETSICNALIDMYAKCGRIDLSRQVFNMMP 388
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD+V+W M+ GYA G AV+ M+ + PN +TLV +L + AL+
Sbjct: 71 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 130
Query: 60 FGQYVHSYI---------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
G VH+Y +++ L+ L+G A+++MY KCG + A +VF+ + ++ +
Sbjct: 131 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 190
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQG--LILF 167
+WS +I G + QA LF M+ G+ F + + + AC+ + G L
Sbjct: 191 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 250
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
A S V+ + ++ MY +AGL+++A A EM ++
Sbjct: 251 LAKSGVHADLTAGN---SLLSMYAKAGLIDQAIALFDEMAVK 289
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 13/191 (6%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
PN T L ACS+++ G+ +H + + L V A+++MYVKC + A
Sbjct: 8 PNNYTFPFALKACSALADHHCGRAIHRH-AIHAGLQADLFVSTALLDMYVKCACLPDAAH 66
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQAL-QLFSL-MIINGVFPDDVTFIALISACSHG 157
+F + +D+++W+ +++G A +G A+ L S+ M ++ + P+ T +AL+ +
Sbjct: 67 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 126
Query: 158 GLVDQGL---------ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
G + QG L ++ ++ ++DMY + G L A MP
Sbjct: 127 GALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPA 186
Query: 209 EAEWSVWGALL 219
E + W AL+
Sbjct: 187 RNEVT-WSALI 196
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 187/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +DV +W+ +I GY + EA+ +F+E+ PNE T++ V+SAC+ + L
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH YI TR S + N++I+M+ KCGD+ A ++F+ ++YKD+ISW+++++GLA
Sbjct: 301 GRWVHDYI-TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLA 359
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL F LM + PD++TFI +++ACSH GLV +G LF + +Y + ++
Sbjct: 360 LHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGLL EA FIR MP++ + ++WG++L ACR++ N E+ + + L+
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLE 479
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A W + K+R+ + G++K GCS + ++
Sbjct: 480 LEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVID 528
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 131/232 (56%), Gaps = 17/232 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ V WT+MI GY + EA+ ++++ME+ + P+E T+ ++SAC+ + L
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATLVSACAELKDLGV 198
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS+I D+ + ++G+A++NMY KCGD+ A QVF+ L+ KD+ +WS +I G
Sbjct: 199 GMKLHSHIR-EMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYV 257
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +ALQLF + + + P++VT +A+ISAC+ G ++ G V++ + +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-------RWVHDYITR 310
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
TQ V +DM+ + G ++ A+ M + S W +++N +H
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGLALH 361
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 7/217 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV++W +M+ + A+ + EM + P+ T ++L C+ + G+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + +Y L + ++NMY CGD+ A +F + +++ + W+++ISG N C
Sbjct: 102 HGQV-VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHC 160
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY- 183
+AL L+ M +G PD+VT L+SAC+ L D G + K S + E+ +
Sbjct: 161 PNEALLLYKKMEEDGFSPDEVTMATLVSACAE--LKDLG-VGMKLHSHIREMDMKICAVL 217
Query: 184 -ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +V+MY + G L+ A ++ + + W AL+
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALI 253
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 183/291 (62%), Gaps = 5/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+ VSW+ M+ Y++ EEA+ +F +M EP +ATLV+VLSAC+ + L
Sbjct: 325 IPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAG-VEPIDATLVSVLSACAQLGCLDV 383
Query: 61 GQYVH-SYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ ++ +YI S + +L+V+ + NA I+M+ KCGDVG A ++F + K+++SW+T+I
Sbjct: 384 GRCLYDAYIVSHKVELTVN--LSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVA 441
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A++G +AL LF G+FPD++T+I ++SACSH GLV +G FK M VY I P
Sbjct: 442 HALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEP 501
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HYAC++D+ G+ GLLEEA R MP+ A+ + WGALLNACR+H N E+ +L
Sbjct: 502 RAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKL 561
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V G + LMS +A +W IR +R G+KK GCS IEV+
Sbjct: 562 VGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVD 612
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 122/260 (46%), Gaps = 33/260 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWTT++ GYA G +EA VF M PNE TLV SA I L
Sbjct: 192 MADRDVVSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGL 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + +S + NA+++M+ KCG V A ++F+ + KD+ SW++++S A
Sbjct: 252 GRMVHQCV-VESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYA 310
Query: 121 MNG----CGR---------------------------QALQLFSLMIINGVFPDDVTFIA 149
G G+ +A+++F+ MI GV P D T ++
Sbjct: 311 KCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVS 370
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SAC+ G +D G L+ A +++ +DM+ + G + A R M +
Sbjct: 371 VLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK 430
Query: 210 AEWSVWGALLNACRIHRNDE 229
S W ++ A +H E
Sbjct: 431 NVVS-WNTMIVAHALHGQSE 449
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 144/272 (52%), Gaps = 13/272 (4%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TM+ G+ G A+++F+ + ++ P +A + V + ++ ++ S + +H
Sbjct: 101 ATMMRGFLRAGKPAHALALFRRV--LRDRLPADARTI-VFAVKAATTSSSPAEAIHCVAF 157
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R + S LVGNA+++MY + A ++F+ +A +D++SW+T++ G A G +A
Sbjct: 158 KRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAW 217
Query: 130 QLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQTQHYACV 186
++F M++ G +P++VT +A SA GL+ G ++ + + S V V +
Sbjct: 218 RVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLEN---AL 274
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
VDM+G+ G + A+ MPI+ +S W ++++A + E + +E+ N+ VS
Sbjct: 275 VDMFGKCGCVASAKEIFDGMPIKDVYS-WTSMVSAYAKCGDLENAGKLFKEIPNRNAVS- 332
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
++ M ++ A+ E+A +I +++ G++
Sbjct: 333 --WSCMVAAYSQANLPEEAMRIFNDMIAAGVE 362
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 187/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+D V+W MI GYA+ G EEA+ +FQ+M + A P++ TL+ +LSAC+SI AL
Sbjct: 289 MKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTA-PDQITLIGILSACASIGALDL 347
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V Y S R VG A+++MY KCG + A +VF + K+ +SW+ +IS LA
Sbjct: 348 GKQVEIYASER-GFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALA 406
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++AL LF M+ G V P+D+TF+ ++SAC H GLVD+G LF MS+ + +VP
Sbjct: 407 FHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVP 466
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY+C+VD++ RAG LEEA F+ MP + + + GALL AC+ +N ++ + + + L
Sbjct: 467 KIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLL 526
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + + S +A RW+D+ ++R +++ G+ K GCSWI++N +
Sbjct: 527 LELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQL 580
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 137/249 (55%), Gaps = 18/249 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+VSW +MI GY++ EAV +F+EM + +PNE +LV+VL AC + L G
Sbjct: 190 QKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAG-FQPNEMSLVSVLGACGELGDLKLGT 248
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+V ++ ++++ +G+A+I+MY KCGD+ A ++F+ + KD ++W+ +I+G A N
Sbjct: 249 WVEEFV-VENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQN 307
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A++LF M ++ PD +T I ++SAC+ G +D G EI +
Sbjct: 308 GMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLG--------KQVEIYASERG 359
Query: 183 Y-------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ +VDMY + G L+ A MP + E S W A+++A H + +
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVS-WNAMISALAFHGQAQEALALF 418
Query: 236 QELVNKKGV 244
+ ++N+ G
Sbjct: 419 KSMMNEGGT 427
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
+PN T + ACS++ A+ G+ H + R L V +++I MY +CG +G A
Sbjct: 124 KPNNLTYPFLFIACSNLLAVENGRMGHCSV-IRRGLDEDGHVSHSLITMYARCGKMGDAR 182
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+ ++ KD++SW+++ISG + +A+ LF M+ G P++++ ++++ AC G
Sbjct: 183 KVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
Query: 159 LVDQGLILFKAMSTVYEIVPQ---TQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
+ G + V E V + T +Y + ++ MYG+ G L A M + +
Sbjct: 243 DLKLG-------TWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMK-KKDK 294
Query: 213 SVWGALL 219
W A++
Sbjct: 295 VTWNAMI 301
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 186/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R +VSW MI GY++ G +EA+++F++M + +P E ++ V ACS +SAL
Sbjct: 371 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM-LSDGIQPYEIAIMCVCGACSQLSALRL 429
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + L+ V +++I+MY K G +G++ ++F+ L KD+ SW+ +I+G
Sbjct: 430 GKELHCF-ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 488
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++AL+LF M+ G+ PDD TF ++ ACSH GLV+ GL F M ++ I P+
Sbjct: 489 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 548
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVDM GRAG +++A I EMP + + +W +LL++CRIH N + + + +L+
Sbjct: 549 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE 608
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN FAG+ +W+D ++R ++ +GL+K GCSWIEV +
Sbjct: 609 LEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 660
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++++ W ++ Y E+A+S+F E+ E +P+ TL V+ AC+ + L
Sbjct: 167 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 226
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
GQ +H ++T+ DL VGNA+I MY KCG V A++ VF+++ K + SW+ ++ G
Sbjct: 227 GQIIHG-MATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGY 285
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A N R+AL L+ M +G+ PD T +L+ ACS
Sbjct: 286 AQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 121/227 (53%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + V SW ++ GYA+ +A+ ++ +M + +P+ T+ ++L ACS + +L +
Sbjct: 270 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHY 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + R L+V +G +++++Y+ CG A +F+ + ++ ++SW+ +I+G +
Sbjct: 329 GEEIHGF-ALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYS 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVP 178
NG +A+ LF M+ +G+ P ++ + + ACS + G L F + + E +
Sbjct: 388 QNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIF 447
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++DMY + G + ++ + E + + W ++ IH
Sbjct: 448 VS---SSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIH 490
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 8/212 (3%)
Query: 13 IGGYAERGFCEEAVSVFQEMEKT---KEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
I E G +EA+ Q A+ +EA V +L AC + G+ +H +S
Sbjct: 74 IKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMGV-LLQACGQRKDIEVGRRLHEMVS 132
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
++ +I MY CG + VF+ L K++ W+ ++S N A+
Sbjct: 133 ASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192
Query: 130 QLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVV 187
+FS +I + PD+ T +I AC+ GL+D GL + M+T ++V ++
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQIIHGMATKMDLVSDVFVGNALI 250
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
MYG+ GL+EEA + ++ S W ALL
Sbjct: 251 AMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +MIGG+A G +EA++ F EME + PN TL++ LSAC+S AL
Sbjct: 284 MPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLLSTLSACASHGALDT 342
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+Y+ + D++ + +++I+MY KCGD+ A+Q+F +D+ +W++++ GLA
Sbjct: 343 GAWIHAYVD-KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLA 401
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL FS M V PDDVT + ++SAC+H GL+DQG F++M V+ +VP+
Sbjct: 402 MHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKV 461
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G L+EA I MP+EA +WGA L+ACR+H N E+ + + L+
Sbjct: 462 EHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLG 521
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++SN +A +W+ + +R EI++ GLKK GCS IEVN S+
Sbjct: 522 LDPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSV 573
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQY 63
+V W TMI E G + M+ + PN T + +L A S + G+
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+ + R + S V A++ YV CG VG QVF+ + ++ W+ +I
Sbjct: 113 VHASV-VRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVT 171
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQT 180
+AL+LF M G+ PD V ++SAC G L D G+ KAM E I
Sbjct: 172 FPEKALELFRTMREVGLTPDMVAISTVVSAC--GLLGDLGVA--KAMHCFIEKSGIEVDA 227
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ ++ YG G L+ A F +E P++ VW +++ H N E+ + Q + +
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286
Query: 241 KKGVS----VGTFA 250
+ VS +G FA
Sbjct: 287 RDVVSWNSMIGGFA 300
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 34/236 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +V WT +I Y F E+A+ +F+ M + P+ + V+SAC + L
Sbjct: 152 MRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVG-LTPDMVAISTVVSACGLLGDLGV 210
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI---------------------- 98
+ +H +I + + V V + +I+ Y +CG + A
Sbjct: 211 AKAMHCFIE-KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 99 ---------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
Q+F + +D++SW+++I G A G ++AL F M +GV P+ +T ++
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+SAC+ G +D G + A ++ + ++DMY + G +++A E
Sbjct: 330 TLSACASHGALDTGAWI-HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE 384
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ GY + G EEA VF++M+ EP+ AT+V+++ ACS ++AL
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPACSHLAALQH 459
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R L+ + NA+I+MY KCG + ++ QVFNM+ +D++SW+T+I+G
Sbjct: 460 GRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A LF M G PD VTFI L+SACSH GLV +G F M Y + P+
Sbjct: 519 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 578
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R G L+EA FI+ MP+ A+ VW ALL ACR+++N ++ + + +
Sbjct: 579 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN ++ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 639 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 12/212 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ +A +F+ M + ++ + L AC+S+ L
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ + + GN++++MY K G + AI +F+ +A KD +S+S ++SG
Sbjct: 359 GEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 417
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG +A +F M V PD T ++LI ACSH G G ++ + +++
Sbjct: 418 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
I ++DMY + G ++ + MP
Sbjct: 478 IC------NALIDMYAKCGRIDLSRQVFNMMP 503
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD+V+W M+ GYA G AV+ M+ + PN +TLV +L + AL+
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245
Query: 60 FGQYVHSYI---------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
G VH+Y +++ L+ L+G A+++MY KCG + A +VF+ + ++ +
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQG--LILF 167
+WS +I G + QA LF M+ G+ F + + + AC+ + G L
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
A S V+ + ++ MY +AGL+++A A EM ++
Sbjct: 366 LAKSGVHADLTAGN---SLLSMYAKAGLIDQAIALFDEMAVK 404
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 16/232 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEA--VSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+P DV ++ +I Y+ A + +++ M + + A PN T L ACS+++
Sbjct: 83 IPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVA-PNNYTFPFALKACSALADH 141
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H + + L V A+++MYVKC + A +F + +D+++W+ +++G
Sbjct: 142 HCGRAIHRH-AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAG 200
Query: 119 LAMNGCGRQAL-QLFSL-MIINGVFPDDVTFIALISACSHGGLVDQGL---------ILF 167
A +G A+ L S+ M ++ + P+ T +AL+ + G + QG L
Sbjct: 201 YAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLH 260
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ ++ ++DMY + G L A MP E + W AL+
Sbjct: 261 PNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT-WSALI 311
>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 719
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 179/288 (62%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSW M+ Y +E + +F +M E PNEATLV+VL+AC+ + L
Sbjct: 313 MPYRNVVSWNIMLALYVRIKDYDECLRMFDKM--MGETMPNEATLVSVLTACAHLGRLDR 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI + L+ A++ MY KCG + +A VF+ ++ + ++SW+++I G
Sbjct: 371 GKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYG 430
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL++F M G P+D TFI ++SAC+H G++ +G F M Y+I P+
Sbjct: 431 MHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKV 490
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+++ E IR+MP+E ++WGALL+ACR H N E+ + + + L+
Sbjct: 491 EHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIE 550
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ +G + L+SN +A +W+D +R ++ GL K TG SW+ +
Sbjct: 551 LEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHI 598
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 17/231 (7%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A+ + E K PN T ++ C I ++ G+ +H+ I ++ + V N++
Sbjct: 142 ALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARI-LKFGFELDLFVRNSL 200
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
I+MY CG +G A +F + + D+++W+++I G NG A +LF M +F
Sbjct: 201 IHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF--- 257
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204
++ ++I+ G + LF M +IV + C++D Y + +E A
Sbjct: 258 -SWNSMIAGYVGNGDMTAAEDLFNKMP-FRDIV----SWNCMIDGYAQVQNMEIACELFN 311
Query: 205 EMPIE--AEWSVWGALLNACRIHRNDE---MFDPIRQELVNKKGVSVGTFA 250
MP W++ AL RI DE MFD + E + + V
Sbjct: 312 WMPYRNVVSWNIMLALY--VRIKDYDECLRMFDKMMGETMPNEATLVSVLT 360
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 42/206 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+ SW +MI GY G A +F +M +++S
Sbjct: 251 MPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM-----------PFRDIVS---------- 289
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +I+ Y + ++ IA ++FN + Y++++SW+ +++
Sbjct: 290 --------------------WNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 329
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ L++F M + P++ T +++++AC+H G +D+G + + I P
Sbjct: 330 RIKDYDECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++ MY + G ++ A +M
Sbjct: 389 LLSTALLTMYAKCGAMDLARDVFDKM 414
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ ++ GY + G EEA VF++M+ EP+ AT+V+++ ACS ++AL
Sbjct: 401 MAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQAC-NVEPDAATMVSLIPACSHLAALQH 459
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R L+ + NA+I+MY KCG + ++ QVFNM+ +D++SW+T+I+G
Sbjct: 460 GRCSHGSVIIR-GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A LF M G PD VTFI L+SACSH GLV +G F M Y + P+
Sbjct: 519 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRM 578
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R G L+EA FI+ MP+ A+ VW ALL ACR+++N ++ + + +
Sbjct: 579 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F L+SN ++ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 639 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 12/212 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V+W+ +IGG+ +A +F+ M + ++ + L AC+S+ L
Sbjct: 299 MPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRM 358
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ + + GN++++MY K G + AI +F+ +A KD +S+S ++SG
Sbjct: 359 GEQLHALLA-KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYV 417
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYE 175
NG +A +F M V PD T ++LI ACSH G G ++ + +++
Sbjct: 418 QNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
I ++DMY + G ++ + MP
Sbjct: 478 IC------NALIDMYAKCGRIDLSRQVFNMMP 503
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD+V+W M+ GYA G AV+ M+ + PN +TLV +L + AL+
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245
Query: 60 FGQYVHSYI---------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
G VH+Y +++ L+ L+G A+++MY KCG + A +VF+ + ++ +
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQG--LILF 167
+WS +I G + QA LF M+ G+ F + + + AC+ + G L
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHAL 365
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
A S V+ + ++ MY +AGL+++A A EM ++
Sbjct: 366 LAKSGVHADLTAGN---SLLSMYAKAGLIDQAIALFDEMAVK 404
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 16/232 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEA--VSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+P DV ++ +I Y+ A + +++ M + + A PN T L ACS+++
Sbjct: 83 IPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVA-PNNYTFPFALKACSALADH 141
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H + + L V A+++MYVKC + A +F + +D+++W+ +++G
Sbjct: 142 HCGRAIHRH-AIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAG 200
Query: 119 LAMNGCGRQAL-QLFSL-MIINGVFPDDVTFIALISACSHGGLVDQGL---------ILF 167
A +G A+ L S+ M ++ + P+ T +AL+ + G + QG L
Sbjct: 201 YAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLH 260
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ ++ ++DMY + G L A MP E + W AL+
Sbjct: 261 SNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT-WSALI 311
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 179/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V SW +IGGY G +EA+ F+ M PN+ T+V VLSACS + L
Sbjct: 113 MPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEI 172
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++VH Y S Y ++ VGNA+I+MY KCG + A+ VF+ L KD+I+W+T+I+ L
Sbjct: 173 GKWVHVYADSIGYKGNL--FVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSL 230
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+ AL LF M G PD VTF+ ++SAC+H GLV G + F++M Y IVPQ
Sbjct: 231 AMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQ 290
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGL+ +A +R+MP+E + +W ALL ACR ++N EM + Q L+
Sbjct: 291 IEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLI 350
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G F ++SN + R +D +++ +R G +K GCS I N S+
Sbjct: 351 ELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSV 403
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 46/226 (20%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ DVV W ++ GY E G A +F M C +S
Sbjct: 52 PQCDVVLWNVIVSGYIELGDMVAARELFDRMPD-----------------CDVMS----- 89
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V++ Y G+V + ++VF + +++ SW+ +I G
Sbjct: 90 -------------------WNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVR 130
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
NG ++AL+ F M+++G V P+D T +A++SACS G ++ G + A S Y+
Sbjct: 131 NGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLF 190
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G++E+A + ++ + W ++N+ +H
Sbjct: 191 VGN--ALIDMYAKCGVIEKALDVFDGLDVK-DIITWNTIINSLAMH 233
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 177/293 (60%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D+VSW TMIG + +EA+ +F+ M+ ++ ++ T+V V SAC + AL
Sbjct: 433 MPDSDLVSWNTMIGALVQESMFKEAIELFRVMQ-SEGITADKVTMVGVASACGYLGALDL 491
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+++H YI + D+ +G A+++M+ +CGD A+QVFN + +D+ +W+ I +A
Sbjct: 492 AKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMA 550
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G A++LF M+ G+ PD V F+AL++A SHGGLV+QG +F++M +Y I PQ
Sbjct: 551 MEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQA 610
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAGLL EA + I M +E +WG+LL ACR+H+N ++ + +
Sbjct: 611 VHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISE 670
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G L+SN +A A RW+D K+R ++ G K G S IE+N IF
Sbjct: 671 LDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIF 723
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 47/291 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT++IGGYA+RG +EAVS+F EM + PN T+V V+SAC+ + L
Sbjct: 200 MSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVG-IRPNSVTMVGVISACAKLQDLQL 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V + I +L V+ L+ NA+++MY+KCG + A ++F+ K+++ ++T++S
Sbjct: 259 GEQVCTCIG-ELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
G R+ L + M+ +G PD +T ++ +SACS HG ++ GL +
Sbjct: 318 RQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDN 377
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEA-------------------EAFIREMPIEA 210
+ +++MY + G E A F+R +E+
Sbjct: 378 VCNA------------IINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMES 425
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261
W ++ A+ ++ + N M + QE + K+ + + F +M + AD+
Sbjct: 426 AWKIFSAMPDSDLVSWN-TMIGALVQESMFKEAIEL--FRVMQSEGITADK 473
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 130/281 (46%), Gaps = 49/281 (17%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++V + T++ Y +G E ++V EM K P+ T+++ +SACS + +S G++
Sbjct: 304 KNLVLYNTIMSNYVRQGLAREVLAVLGEMLK-HGPRPDRITMLSAVSACSELDDVSCGKW 362
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---------------- 107
H Y+ R L + V NA+INMY+KCG +A +VF+ + K
Sbjct: 363 CHGYV-LRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNG 421
Query: 108 ---------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D++SW+T+I L ++A++LF +M G+ D VT + + S
Sbjct: 422 DMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVAS 481
Query: 153 ACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
AC + G +D G I K +I +VDM+ R G + A +M
Sbjct: 482 ACGYLGALDLAKWIHGYIKKK------DIHFDMHLGTALVDMFARCGDPQSAMQVFNKM- 534
Query: 208 IEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGV 244
++ + S W A + A + N E+FD + Q+ + GV
Sbjct: 535 VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGV 575
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 109/200 (54%), Gaps = 9/200 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
++++I G++ G +A+ VF+++ A P+ T VLSAC+ +AL+ G VH I
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQL-MCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAI 165
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ V N++I+ Y +CG++ +VF+ ++ ++++SW+++I G A GC ++A
Sbjct: 166 -VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEA 224
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYAC 185
+ LF M+ G+ P+ VT + +ISAC+ Q L L + + T E+
Sbjct: 225 VSLFFEMVEVGIRPNSVTMVGVISACAK----LQDLQLGEQVCTCIGELELEVNALMVNA 280
Query: 186 VVDMYGRAGLLEEAEAFIRE 205
+VDMY + G +++A E
Sbjct: 281 LVDMYMKCGAIDKARKIFDE 300
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 176/293 (60%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT M+ GYA+ EA+ VF+ M+ + +E TLV V+SAC+ + A +
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAG-VKTDEVTLVGVISACAQLGAAKY 290
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V SN+V G+A+I+MY KCG V A +VF + +++ S+S++I G
Sbjct: 291 ANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGF 350
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G A++LF M+ + P+ VTFI +++ACSH G+V+QG LF M + + P
Sbjct: 351 AMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPS 410
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GRAG LEEA ++ MP+ VWGALL ACRIH N +M L
Sbjct: 411 EDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLF 470
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ +G + L+SN +A A RW+D +K+R +R GLKK GCSW+E I
Sbjct: 471 ELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGI 523
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 109/237 (45%), Gaps = 47/237 (19%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
WT +I GYA +G E+V ++ M + + P T +L ACS+ ++ G+ VH+
Sbjct: 107 WTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKACSAALDVNLGRQVHTQT 165
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-------------MLAY--------- 106
VGN +I+MYVKCG +G +VF+ ++AY
Sbjct: 166 ILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAA 225
Query: 107 ---------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
KDM++W+ +++G A N R+AL++F M GV D+VT + +ISAC+
Sbjct: 226 SELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQL 285
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQH--------YACVVDMYGRAGLLEEAEAFIREM 206
G K + V ++ Q+ + ++DMY + G +E+A M
Sbjct: 286 GAA-------KYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 185/292 (63%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+V W ++IGG+A+ EA+++F+ M++ ++ATL +VL AC+ ++ L
Sbjct: 213 MPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL-ADQATLTSVLRACTGLALLEL 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ ++D + ++ NA+I+MY KCG + A F+ + KD+ISWST+++GLA
Sbjct: 272 GRQVHVHV-LKFDQDL--ILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLA 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG RQAL+LF M +G P+ +T + ++ ACSH GLV++G F++M ++ + P
Sbjct: 329 QNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGR 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L+EA I EM E + W LL ACR+HRN ++ ++++
Sbjct: 389 EHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIE 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ GT+ L+SN +A RWED ++R + G++K GCSWIEV+ I
Sbjct: 449 LEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQI 500
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 110/219 (50%), Gaps = 10/219 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI Y+ + ++A+ M + + PN T +VL AC + L
Sbjct: 116 MPERNVVSWTTMISAYSNK-LNDKALKCLILMFR-EGVRPNMFTYSSVLRACDGLPNL-- 171
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I++Y K D+ A+ VF+ + +D++ W+++I G A
Sbjct: 172 -RQLHCGI-IKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFA 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N G +AL LF M G D T +++ AC+ L++ G + V +
Sbjct: 230 QNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGR---QVHVHVLKFDQDL 286
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G LE+A + M +E + W ++
Sbjct: 287 ILNNALIDMYCKCGSLEDANSAFSRM-VEKDVISWSTMV 324
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 108/232 (46%), Gaps = 33/232 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEE-----AVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56
P R V + ++ +A FC + A+ ME+ + T ++ CS+
Sbjct: 13 PLRYVADPSPLVNEFA--NFCHQWDLHRAMRAMDAMERHG-VFADAITYSELIKCCSARG 69
Query: 57 ALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A+ G+ VH +I + Y+ + V N ++NMYVK + A +F+ + ++++SW+T+
Sbjct: 70 AVQEGKRVHEHIFCKGYEPKM--FVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTM 127
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS--------HGGLVDQGLILF 167
IS + N +AL+ LM GV P+ T+ +++ AC H G++ GL
Sbjct: 128 ISAYS-NKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGL--- 183
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
S V+ + ++D+Y + L+ A EMP + VW +++
Sbjct: 184 --ESDVFV-------RSALIDVYSKWSDLDNALGVFDEMPTR-DLVVWNSII 225
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYAC 185
+A++ M +GVF D +T+ LI CS G V +G + + + YE P+
Sbjct: 38 RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYE--PKMFVVNT 95
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
+++MY + LLEEAE EMP E W +++A ND+ + L+ ++GV
Sbjct: 96 LLNMYVKFNLLEEAEDLFDEMP-ERNVVSWTTMISAYSNKLNDKALKCL--ILMFREGVR 152
Query: 246 VGTFALMS 253
F S
Sbjct: 153 PNMFTYSS 160
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 183/288 (63%), Gaps = 4/288 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++++ SW MI G+ E EEA+ +F+EM+ TK + ++ T+ ++L AC+ + AL G+
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQ-TKGIKGDKVTMASLLLACTHLGALELGK 308
Query: 63 YVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++H+YI R D+ V+ +G A+++MY KCG + AIQVF+ + KD+++W+ +I GLAM
Sbjct: 309 WLHAYIKKQRIDVDVA--LGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAM 366
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G ALQ F M I GV PD +TF+ +++ACSH G VD+G+ F +MS Y I P +
Sbjct: 367 CGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIE 426
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY +VD+ GRAG + EAE I+ MP+ + V G LL ACRIH N E + ++L+
Sbjct: 427 HYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEI 486
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
GT+ L+SN + + +WE+A + R+ + G++K GCS IEV+
Sbjct: 487 DPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + VVSW TMIG +A+ EAV +F M K++ +PNE TLVNVL+AC+ L+
Sbjct: 146 MEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAM 205
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H YI + ++ ++++Y KCG V +A +F+ K++ SW+ +I+G
Sbjct: 206 VKRIHEYID-EHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHV 264
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ +AL LF M G+ D VT +L+ AC+H G ++ G L A I
Sbjct: 265 EDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWL-HAYIKKQRIDVDV 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G +E A EMP E + W AL+
Sbjct: 324 ALGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALI 361
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + ++I G ++ +EA+ +QEM + P+ T ++ +C + S
Sbjct: 48 IPNPTSYTCNSIIRGCTDKNLHQEALLFYQEM-MVQGLIPDRYTFPSLFKSCRNSSE--- 103
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + ST+ + N ++NMY CG + A +VF+ + K ++SW+T+I A
Sbjct: 104 GKQIHCH-STKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHA 162
Query: 121 MNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACS 155
+A++LF M+ + V P++VT + +++AC+
Sbjct: 163 QWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACA 198
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
MP++DV++WT +I G A G E A+ F EM K +P+ T V VL+ACS
Sbjct: 349 MPEKDVMTWTALILGLAMCGQAENALQYFDEMH-IKGVKPDAITFVGVLAACS 400
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+VSW TM+ Y + E+ +F +M+ + +P++ TL+++LS+C+ + AL+
Sbjct: 460 IPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSN-VKPDKTTLISLLSSCAKVGALNH 518
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +V+ YI + ++ + ++G A+I+MY KCG V +A ++F + K++ W+ +++ A
Sbjct: 519 GIWVNVYIE-KNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYA 577
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G +A+ L+ M GV PD VTFIAL++ACSHGGLVD+G F + + Y I+P
Sbjct: 578 MEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTI 637
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GR G LEE FI MPIE + S+W +L+ ACR H N E+ + ++L+
Sbjct: 638 HHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIE 697
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN +A A RW+D +K+R ++ G+ K+ G + IE N
Sbjct: 698 IDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQN 746
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 35/252 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R +VSWTTM+ GY + G+ E++ +FQ+M + + P+E LV VLSAC +
Sbjct: 328 MNERSLVSWTTMMSGYVQGGYYCESLELFQQM-RFENVIPDEVALVTVLSACVHLEDFDL 386
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV-------------------- 100
G+ VH++I T Y + V +GNA++++Y KCG + A++
Sbjct: 387 GRSVHAFIVT-YGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFC 445
Query: 101 -----------FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
FN + KD++SW+T+++ + ++ ++F M + V PD T I+
Sbjct: 446 RSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLIS 505
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
L+S+C+ G ++ G I EI ++DMYG+ G +E A ++ IE
Sbjct: 506 LLSSCAKVGALNHG-IWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQI-IE 563
Query: 210 AEWSVWGALLNA 221
VW A++ A
Sbjct: 564 KNVFVWTAMMAA 575
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 48/305 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+SW TMI Y +G EA+ +F EM P+E T+V+++S C+ + L
Sbjct: 194 MTHRDVISWNTMISCYVLKGMYREALDLFDEM-LVSGVLPDEITMVSLVSTCAKLKDLEM 252
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---------------------------- 92
G+ +H YI L + + N +++MY KCG
Sbjct: 253 GKRLHLYIVDN-KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSG 311
Query: 93 -----DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ A Q+F+ + + ++SW+T++SG G ++L+LF M V PD+V
Sbjct: 312 YVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVAL 371
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++SAC H D G + A Y ++ ++D+Y + G L+EA ++P
Sbjct: 372 VTVLSACVHLEDFDLGRSV-HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLP 430
Query: 208 IEAEWSVWGALLNA-CR---IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWE 263
++ S W ++L+ CR + + + F+ I ++ + ++ M N + D +
Sbjct: 431 CKSAAS-WNSMLDGFCRSGGVDKARDFFNKIPEK-------DIVSWNTMVNAYVKHDLFN 482
Query: 264 DANKI 268
++ +I
Sbjct: 483 ESFEI 487
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 120/235 (51%), Gaps = 12/235 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W T++ + G +E + + M T+ + +T ++ AC + G VH I
Sbjct: 101 WNTLLENKLKEGCPQEVLECYYHM-VTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRI 159
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ + + N ++ +Y KCG + Q+F + ++D+ISW+T+IS + G R+A
Sbjct: 160 -LKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREA 218
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACV 186
L LF M+++GV PD++T ++L+S C+ ++ G L L+ + ++ + C+
Sbjct: 219 LDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLW---IRGSLLNCL 275
Query: 187 VDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLN----ACRIHRNDEMFDPIRQ 236
VDMY + G ++EA + R E + +W L++ + +I + ++FD + +
Sbjct: 276 VDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNE 330
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 34 KTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 93
KT + ++++L +CS+I S +H+++ T +L + + V+ + +
Sbjct: 27 KTSHSVLRPHWIIDLLKSCSNIREFS---PIHAHLITA-NLIHDPEITSQVLAFLLSVNN 82
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ A Q+ + + I W+T++ GC ++ L+ + M+ GV D TF LI A
Sbjct: 83 LDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHA 142
Query: 154 C 154
C
Sbjct: 143 C 143
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 120/290 (41%), Positives = 182/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV WT+MI GY + G ++AV +F++M+ + + ++AT+ V+S+C + AL
Sbjct: 291 MPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISG-VKADDATIATVVSSCGQMGALDL 349
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+YVH+Y + L V N++I+MY KCGD+ A ++F L +D SW+ +I G A
Sbjct: 350 GRYVHAYCDV-HGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFA 408
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG +AL LF+ M G V P+++TF+ ++++CSHGGLV+QG F MS VY I P+
Sbjct: 409 VNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPR 468
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI EMPI + ++W +LL ACR + + + + +
Sbjct: 469 IEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYVAERVE 528
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN +A RW D NK+R + R + K+ GCS IEVN
Sbjct: 529 ELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVN 578
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 106/213 (49%), Gaps = 9/213 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ + M+GGY+ RG + A VF+ N ++S + ++
Sbjct: 196 MPERNTHTLMEMVGGYSARGDMDSAKHVFE----MANGVVNMVLCTAMISGFAKTGSVDD 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + R D++ N++ + MY KCG V A +VF+ + ++++ W+++ISG
Sbjct: 252 ARSVFDGMRQR-DVATWNVM---IGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYT 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +QA++LF M I+GV DD T ++S+C G +D G + A V+ +
Sbjct: 308 QVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYV-HAYCDVHGLGKGI 366
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
++DMY + G +++A R + ++S
Sbjct: 367 SVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFS 399
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 13/203 (6%)
Query: 24 EAVSVFQEMEK-TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
+AV+++ +M + P T+ +VL A + L G+ VH ++ + +
Sbjct: 85 DAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHV-FKNGFQTDERIAT 143
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
++++Y +CG + A +VF+ L KD ++T+I+ G A +LF +M
Sbjct: 144 TLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTH- 202
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
T + ++ S G +D +F+ + V +V T ++ + + G +++A +
Sbjct: 203 ---TLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCT----AMISGFAKTGSVDDARSV 255
Query: 203 IREMPIE--AEWSVW-GALLNAC 222
M A W+V G + C
Sbjct: 256 FDGMRQRDVATWNVMIGVMYAKC 278
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ VV W +I G + +EA+++F EM+ + EP++ T+VN LSACS + AL
Sbjct: 351 IPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRTIEPDKVTMVNCLSACSQLGALDV 409
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI R+ LS+ +G A+++MY KCG++ A+QVF + ++ ++W+ VI GLA
Sbjct: 410 GIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G + AL FS MI G+ PD++TF+ ++SAC HGGLV++G F MS+ + + P+
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG LEEAE ++ MP+ A+ +V GAL ACR++ N ++ + +L+
Sbjct: 529 KHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLE 588
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+++ ++ A W++A R + G++K GCS +E+N
Sbjct: 589 IDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 132/257 (51%), Gaps = 35/257 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W +MI G +RG EA+ +++EME K PNE T++ ++S+CS + L+ G+
Sbjct: 222 RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEK-VRPNEITMIGMISSCSQVQDLNLGKE 280
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA--- 120
H YI + L + + NA+++MYVKCG++ A +F+ +A K ++SW+T++ G A
Sbjct: 281 FHCYIK-EHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 121 -----------------------MNGC-----GRQALQLFSLMIINGVFPDDVTFIALIS 152
++GC G++AL LF M I + PD VT + +S
Sbjct: 340 FLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLS 399
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G +D G+ + + +++ +VDMY + G + A E+P +
Sbjct: 400 ACSQLGALDVGIWIHHYIER-HKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNC 457
Query: 213 SVWGALLNACRIHRNDE 229
W A++ +H N +
Sbjct: 458 LTWTAVICGLALHGNAQ 474
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V SW I GY E G E +++ M +P+ T +L C + G V
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
++ ++ V NA I M + CG++ +A VFN +D+++W+++I+G G
Sbjct: 181 LGHV-LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGL 239
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE------IVP 178
+A++++ M V P+++T I +IS+CS Q L L K + +P
Sbjct: 240 AIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ----VQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREM 206
T ++DMY + G L A M
Sbjct: 296 LTN---ALMDMYVKCGELLTARVLFDNM 320
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 185/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ +SWTTMI GY + G +EA+ +F EM+ + + EP+ +L N LSAC+ + AL
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNS-DVEPDNVSLANALSACAQLGALEQ 294
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY+ T+ + + +++G +I+MY KCGD+G A++VF + K + +W+ +ISG A
Sbjct: 295 GKWIHSYL-TKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYA 353
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A+ F M G+ P+ +TF +++ACS+ GLV++G ++F M Y + P
Sbjct: 354 YHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTI 413
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ RAGLL+EA+ FI+EMP++ +WGALL ACRIH+N E+ + I + L+
Sbjct: 414 EHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA 473
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + +N A +W+ A + R ++ G+ K GCS I +
Sbjct: 474 IDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISL 521
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 41/257 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D W MI G++ E ++ ++Q M A N T ++L ACS++SAL
Sbjct: 106 RPDTFLWNLMIRGFSCSDEPERSLLLYQRM-LCCSAPHNAYTFPSLLKACSNLSALEETT 164
Query: 63 YVHSYISTR-YD---LSVSNLVG--------------------------NAVINMYVKCG 92
+H+ I+ Y+ +V++L+ N+VI Y K G
Sbjct: 165 QIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAG 224
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ IA+ +F + K+ ISW+T+ISG G ++ALQLF M + V PD+V+ +S
Sbjct: 225 KMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALS 284
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-VDMYGRAGLLEEA-EAF--IREMPI 208
AC+ G ++QG + ++ + CV +DMY + G + EA E F I+ +
Sbjct: 285 ACAQLGALEQGKWIHSYLTKTR--IRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSV 342
Query: 209 EAEWSVWGALLNACRIH 225
+A W AL++ H
Sbjct: 343 QA----WTALISGYAYH 355
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 181/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VSW +I G+A +G E A+ + +M++ K +P T +V SAC+SI AL
Sbjct: 250 MPTKSEVSWNALISGHARKGEGEHALHLLWKMQR-KNFQPTHFTYSSVFSACASIGALEQ 308
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+++ + L + +GN +++MY K G + A +VF+ L D++SW+T+++G A
Sbjct: 309 GKWVHAHM-IKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCA 367
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++ L F M+ G+ P++++F+ +++ACSH GL+D+GL F+ M Y++ P
Sbjct: 368 QHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDV 426
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY VD+ GR GLL+ AE FIREMPIE +VWGALL ACR+H+N E+ +
Sbjct: 427 PHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFE 486
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G L+SN +A A RW D K+R ++ G+KK+ CSW+E+ ++
Sbjct: 487 LDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAV 538
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 121/243 (49%), Gaps = 13/243 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+V+WT +I G+++ +A+ +F +M + +PN TL ++L A S L
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLKASGSEHGLDP 207
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H++ +Y S VG+A+++MY +CG + A F+ + K +SW+ +ISG A
Sbjct: 208 GTQLHAFC-LKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
G G AL L M P T+ ++ SAC+ G ++QG + K+ +
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF 326
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIR 235
+ T ++DMY +AG +++A+ + ++ + W +L C H E D
Sbjct: 327 IGNT-----LLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQHGLGKETLDRFE 380
Query: 236 QEL 238
Q L
Sbjct: 381 QML 383
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 2/182 (1%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ +L C+ + + G+ VH+++ + L ++ N ++NMY KCG + A +
Sbjct: 85 PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ + KDM++W+ +I+G + N R AL LF M+ G+ P+ T +L+ A
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHG 204
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+D G L A Y + +VDMY R G ++ A+ MP ++E S W AL+
Sbjct: 205 LDPGTQL-HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVS-WNALI 262
Query: 220 NA 221
+
Sbjct: 263 SG 264
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 190/294 (64%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VV+W +MI GY + GF +EA+ +F M++ EPN AT V+VLSAC+ + A
Sbjct: 172 MRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIG-VEPNSATFVSVLSACAHLGAFIL 230
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +VH Y + DL+V ++G ++INMY +CG+V A +VF+ + +++++W+ +ISG
Sbjct: 231 GCWVHEYAVGNGLDLNV--VLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGY 288
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG G QA++LF M NG+ P+ +TF+A++SAC+H GLV++G +F++M Y +VP+
Sbjct: 289 GTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPE 348
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VDM GRAGLL+EA FI+E+ E ++W A+L AC++H+N + + + +
Sbjct: 349 VEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRL 408
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + ++SN +A A R + +RD + R LKK+ G S I+++ +
Sbjct: 409 ASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTY 462
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 27/233 (11%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P D +T++I ++ F ++ + M + A P+ T +V+ +C+ + AL
Sbjct: 70 VPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVA-PSNYTFTSVIKSCADLVALR 128
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H ++ V A+++ Y KCG + A +VF+ + + +++W+++ISG
Sbjct: 129 HGRIIHGHVLVN-GFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGY 187
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG-----------LVDQGLILFK 168
NG ++A++LF M GV P+ TF++++SAC+H G V GL L
Sbjct: 188 EQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNV 247
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ T +++MY R G + +A M E W A+++
Sbjct: 248 VLGT------------SLINMYTRCGNVSKAREVFDSMK-ERNVVAWTAMISG 287
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V+W +I Y + G +EA+S F +M + + PN T V+VL A + ++A G
Sbjct: 596 KDEVTWNVIIAAYMQNGHAKEAISSFHQM-RLENFHPNSVTFVSVLPAAAYLAAFREGMA 654
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ I LS + LVGN++I+MY KCG + + ++FN + +KD +SW+ ++SG A++G
Sbjct: 655 FHACIIQMGFLS-NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHG 713
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ LFSLM + V D V+F++++SAC H GLV++G +F +MS Y I P +HY
Sbjct: 714 HGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHY 773
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAGL +E FI+ MP+E + VWGALL +CR+H N ++ + LV +
Sbjct: 774 ACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEP 833
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ F ++S+ +A + RW DA K R ++ +GLKK GCSW+E+ +
Sbjct: 834 RNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 882
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 122/219 (55%), Gaps = 5/219 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W+ +I + G+ EEA+S+FQEM+ K +PN TL+++L AC+ +S L G+
Sbjct: 393 RDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKS 451
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + + D+ G A+++MY KCG A+ FN ++ +D+++W+++I+G A G
Sbjct: 452 IHCF-TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIG 510
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQH 182
A+ +F + ++ + PD T + ++ AC+ +DQG + + + +E ++
Sbjct: 511 DPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN 570
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G L AE + + W ++ A
Sbjct: 571 --ALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 5/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+V+W ++I GYA+ G A+ +F ++ + P+ T+V V+ AC+ ++ L
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL-RLSAINPDAGTMVGVVPACALLNDLDQ 549
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G +H I + V NA+I+MY KCG + A +FN + KD ++W+ +I+
Sbjct: 550 GTCIHGLI-VKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAY 608
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG ++A+ F M + P+ VTF++++ A ++ +G+ F A +
Sbjct: 609 MQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSN 667
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G L +E EM + S W A+L+ +H
Sbjct: 668 TLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVS-WNAMLSGYAVH 712
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 92/163 (56%), Gaps = 4/163 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVV+W MI G ++ EAV F+ M+ EP+ +L+N+ +S +
Sbjct: 190 MPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNLFPGICKLSNIEL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y+ R S+ V N +I++Y KCGDV +A +VF+ + +D +SW T+++G A
Sbjct: 249 CRSIHGYVFRR---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYA 305
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NGC + L+LF M + V + V+ ++ A + +++G
Sbjct: 306 HNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 6/221 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW TM+ GYA G E + +F +M K N+ + V+ A + L
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSAFLAAAETIDLEK 347
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H + R D + LV ++ MY KCG+ A Q+F L +D+++WS +I+ L
Sbjct: 348 GKEIHGCALQQRIDSDI--LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAAL 405
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +AL LF M + P+ VT ++++ AC+ L+ G + + ++
Sbjct: 406 VQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI-HCFTVKADMDSD 464
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+V MY + G A M + W +L+N
Sbjct: 465 LSTGTALVSMYAKCGFFTAALTTFNRMS-SRDIVTWNSLIN 504
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 22/244 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P + W +MI Y EA+ ++ M + K EP++ T VL AC+ L G
Sbjct: 90 PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKACTGALNLQEG 148
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ H I R L +G +++MY K GD+ A +VF+ + +D+++W+ +I+GL+
Sbjct: 149 VWFHGEIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEI 176
+ +A+ F M + GV P V+ + L ++ G + + S+
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVS- 266
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-----NACRIHRNDEMF 231
++D+Y + G ++ A +M ++ + WG ++ N C + E+F
Sbjct: 267 -------NGLIDLYSKCGDVDVARRVFDQM-VDQDDVSWGTMMAGYAHNGCFVEVL-ELF 317
Query: 232 DPIR 235
D ++
Sbjct: 318 DKMK 321
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 48 VLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
+LS+C ++ L +H+ I ++ S+++L IN+Y +A VF+
Sbjct: 38 LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITHL-----INLYSLFHKCDLARSVFDST 89
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
I W+++I + +AL+++ M+ G+ PD TF ++ AC+ G L Q
Sbjct: 90 PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT-GALNLQEG 148
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ F + A +VDMY + G L+ A +MP + + W A++
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMI 202
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW M+ GYA G + A+++F M+++ + + + + V+VLSAC +
Sbjct: 694 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES-QVQIDSVSFVSVLSACRHXGLVEE 752
Query: 61 GQYVHSYISTRYDL 74
G+ + +S +Y +
Sbjct: 753 GRKIFHSMSDKYHI 766
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V WT MI GYAE+G ++A++++ +ME+ + ++ T++++LSAC+ L
Sbjct: 271 MPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAG-LKFDDGTVISILSACAVSGLLGL 329
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ I R S V NA+I+MY KCG + A+ +F+ + KD++SW+ +I GLA
Sbjct: 330 GKRVHASIE-RTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLA 388
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +ALQLFS M G PD VTF+ ++ AC+H G VD+GL F AM Y + P+
Sbjct: 389 MHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEV 448
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G L+EA + MP+E +WG LL ACR+H + + + LV
Sbjct: 449 EHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVK 508
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G +++SN +A A W++ IR ++ ++K +G S IEV+ +
Sbjct: 509 SELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEV 560
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 112/236 (47%), Gaps = 26/236 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW +MIGG + G EA +F EM E + + +L ++
Sbjct: 178 MAERDTVSWNSMIGGLVKVGELGEARRLFDEM-----PERDTVSWNTILDGYVKAGEMNA 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + R +S S +V Y K GD+ +A +F+ + K+++ W+ +ISG A
Sbjct: 233 AFELFEKMPARNVVSWSTMVLG-----YSKAGDMDMARILFDKMPVKNLVPWTIMISGYA 287
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G + A+ L++ M G+ DD T I+++SAC+ GL+ G V+ + +T
Sbjct: 288 EKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLG-------KRVHASIERT 340
Query: 181 QHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ + C ++DMY + G LE A + M + + W A++ +H + E
Sbjct: 341 R-FKCSTPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGHGE 394
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 15/214 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV+ + T+I + A SVF EM+ + N T +L ACS + + +
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADN-FTYPFLLKACSGKVWVRVVEMI 137
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--QVFNMLAYKDMISWSTVISGLAMN 122
H+ + + + V N++I+ Y KCG G+A +VF ++A +D +SW+++I GL
Sbjct: 138 HAQVE-KMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKV 196
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A +LF M D V++ ++ G ++ LF+ M
Sbjct: 197 GELGEARRLFDEMPER----DTVSWNTILDGYVKAGEMNAAFELFEKMPA-----RNVVS 247
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
++ +V Y +AG ++ A +MP++ W++
Sbjct: 248 WSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTI 281
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
++ L CSS++ + + +H+ + + +L + VG +I + C + +A+ VFN +
Sbjct: 21 ISDLHRCSSLNQV---KQIHAQV-LKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQ 76
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
D++ ++T+I N A +F M +GV D+ T+ L+ ACS
Sbjct: 77 DPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACS 126
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV W ++ GY + C+EA+S+F EM++ P+E T+VN+L+ACS + AL
Sbjct: 320 MPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVV-PDEITMVNLLTACSQLGALEM 378
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI ++ L S +G ++I+MY KCG++ AI +F + K+ ++W+ +I GLA
Sbjct: 379 GMWVHRYIE-KHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLA 437
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A++ F MI G PD++TFI ++SAC H GLV +G F M T Y + +
Sbjct: 438 NHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKM 497
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C++D+ GRAG L+EAE + MP+E + VWGA+ ACR+ N + + +LV
Sbjct: 498 KHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVE 557
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++N +A A+ + A+K+R +R +G++K GCS IE+N
Sbjct: 558 IDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELN 606
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 126/250 (50%), Gaps = 35/250 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSF 60
P RD+VSW T+IGGY RG EA+ +F M + P+E T++ +S C + L
Sbjct: 187 PVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLEL 246
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + +S + + NA+++MY+KCG + +A VF + ++ ++SW+T+I G A
Sbjct: 247 GRRLHGFVDSD-GVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFA 305
Query: 121 MNG-----------------------------CG--RQALQLFSLMIINGVFPDDVTFIA 149
G C ++AL LF M V PD++T +
Sbjct: 306 KFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVN 365
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
L++ACS G ++ G+ + + + + +V ++DMY + G +E+A +E+P E
Sbjct: 366 LLTACSQLGALEMGMWVHRYIEK-HRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIP-E 423
Query: 210 AEWSVWGALL 219
W A++
Sbjct: 424 KNALTWTAMI 433
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 34/234 (14%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
G + +++ + ++ A P+ T +L AC+ + +G +++ R L
Sbjct: 102 HGVVRRCLPLYRALLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHV-LRLGLDSDV 160
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
V NA + G + A ++F+ +D++SW+T+I G G +AL+LF M+
Sbjct: 161 FVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAE 220
Query: 139 G--VFPDDVTFIALISACSH----------GGLVDQGLI-----LFKAMSTVY------- 174
V PD+VT IA +S C G VD + L A+ +Y
Sbjct: 221 DAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLE 280
Query: 175 ---EIVPQTQHYACV-----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ + +H V + + + GL+++A EMP E + W AL+
Sbjct: 281 MAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMP-ERDVFPWNALMT 333
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ VV W +I G + +EA+++F EM+ + EP++ T+VN LSACS + AL
Sbjct: 351 IPEKSVVPWNAIISGCVQAKQGKEALALFHEMQ-IRTIEPDKVTMVNCLSACSQLGALDV 409
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI R+ LS+ +G A+++MY KCG++ A+QVF + ++ ++W+ VI GLA
Sbjct: 410 GIWIHHYIE-RHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G + AL FS MI G+ PD++TF+ ++SAC HGGLV++G F MS+ + + P+
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG LEEAE ++ MP+ A+ +V GAL ACR++ N ++ + +L+
Sbjct: 529 KHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLE 588
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+++ ++ A W++A R + G++K GCS +E+N
Sbjct: 589 IDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEIN 637
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 132/257 (51%), Gaps = 35/257 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W +MI G +RG EA+ +++EME K PNE T++ ++S+CS + L+ G+
Sbjct: 222 RDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEK-VRPNEITMIGMISSCSQVQDLNLGKE 280
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA--- 120
H YI + L + + NA+++MYVKCG++ A +F+ +A K ++SW+T++ G A
Sbjct: 281 FHCYIK-EHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFG 339
Query: 121 -----------------------MNGC-----GRQALQLFSLMIINGVFPDDVTFIALIS 152
++GC G++AL LF M I + PD VT + +S
Sbjct: 340 FLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLS 399
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G +D G+ + + +++ +VDMY + G + A E+P +
Sbjct: 400 ACSQLGALDVGIWIHHYIER-HKLSIDVALGTALVDMYAKCGNIARALQVFEEIP-QRNC 457
Query: 213 SVWGALLNACRIHRNDE 229
W A++ +H N +
Sbjct: 458 LTWTAVICGLALHGNAQ 474
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 14/208 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V SW I GY E G E +++ M +P+ T +L C + G V
Sbjct: 121 NVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGV 180
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
++ ++ V NA I M + CG++ +A VFN +D+++W+++I+G G
Sbjct: 181 LGHV-LKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGL 239
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE------IVP 178
+A++++ M V P+++T I +IS+CS Q L L K + +P
Sbjct: 240 AIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ----VQDLNLGKEFHCYIKEHGLEFTIP 295
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREM 206
T ++DMY + G L A M
Sbjct: 296 LTN---ALMDMYVKCGELLTARVLFDNM 320
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW+ MI GYA+ EA+++FQEM+ P+E LV+ +SAC+ ++ L
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQ-LHGVRPDETALVSAISACTHLATLDL 421
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YIS R L V+ ++ +I+MY+KCG V A++VF + K + +W+ VI GLA
Sbjct: 422 GKWIHAYIS-RNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLA 480
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG Q+L +F+ M G P+++TF+ ++ AC H GLV+ G F +M ++I
Sbjct: 481 MNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANI 540
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EAE I MP+ + + WGALL ACR HR++EM + + ++L+
Sbjct: 541 KHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQ 600
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+SN +A W + +IR + + G+ K GCS IE N ++
Sbjct: 601 LQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTV 652
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 123/252 (48%), Gaps = 42/252 (16%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD+VSW+ M+ Y + EEA+ +F EM K +E +V+ LSACS + + G+
Sbjct: 232 ERDMVSWSAMVSCYEQNEMGEEALVLFVEM-KGSGVAVDEVVVVSALSACSRVLNVEMGR 290
Query: 63 YVH---------SYISTRYDL-----SVSNLVG-----------------NAVINMYVKC 91
+VH Y+S + L S +V N++I+ Y++C
Sbjct: 291 WVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRC 350
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A +F + KD++SWS +ISG A + C +AL LF M ++GV PD+ ++ I
Sbjct: 351 GSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAI 410
Query: 152 SACSHGGLVDQGLILFKAMS----TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
SAC+H +D G + +S V I+ T ++DMY + G +E A M
Sbjct: 411 SACTHLATLDLGKWIHAYISRNKLQVNVILSTT-----LIDMYMKCGCVENALEVFYAME 465
Query: 208 IEAEWSVWGALL 219
E S W A++
Sbjct: 466 -EKGVSTWNAVI 476
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ +W T++ + + ++ A+P+ T +L C++ + G+ +
Sbjct: 68 NTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQL 127
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H++ +S+ +D V V N ++N+Y CG VG A +VF D++SW+T+++G G
Sbjct: 128 HAHAVSSGFDGDV--YVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAG 185
Query: 124 CGRQALQLFSLM 135
+A ++F M
Sbjct: 186 EVEEAERVFEGM 197
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 186/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R +VSW MI GY++ G +EA+++F++M + +P E ++ V ACS +SAL
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQM-LSDGIQPYEIAIMCVCGACSQLSALRL 527
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + L+ V +++I+MY K G +G++ ++F+ L KD+ SW+ +I+G
Sbjct: 528 GKELHCF-ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 586
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++AL+LF M+ G+ PDD TF ++ ACSH GLV+ GL F M ++ I P+
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVDM GRAG +++A I EMP + + +W +LL++CRIH N + + + +L+
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLE 706
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN FAG+ +W+D ++R ++ +GL+K GCSWIEV +
Sbjct: 707 LEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 758
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 108/202 (53%), Gaps = 4/202 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++++ W ++ Y E+A+S+F E+ E +P+ TL V+ AC+ + L
Sbjct: 60 LRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGL 119
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H ++T+ DL VGNA+I MY KCG V A++VF + ++++SW+++I G +
Sbjct: 120 GQIIHG-MATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFS 178
Query: 121 MNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +++ F M++ PD T + ++ C+ +++G+ + ++ +
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV-HGLAVKLGLNE 237
Query: 179 QTQHYACVVDMYGRAGLLEEAE 200
+ ++DMY + L EA+
Sbjct: 238 ELMVNNSLIDMYSKCRFLSEAQ 259
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 2/154 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFG 61
K+++VSW +MIGGYA + Q+M+ + + + +E T++NVL C S L
Sbjct: 267 KKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSL 326
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H Y S R+ L + LV NA I Y +CG + + +VF+++ K + SW+ ++ G A
Sbjct: 327 KELHGY-SWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQ 385
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
N R+AL L+ M +G+ PD T +L+ ACS
Sbjct: 386 NSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 121/227 (53%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + V SW ++ GYA+ +A+ ++ +M + +P+ T+ ++L ACS + +L +
Sbjct: 368 MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSG-LDPDWFTIGSLLLACSRMKSLHY 426
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + R L+V +G +++++Y+ CG A +F+ + ++ ++SW+ +I+G +
Sbjct: 427 GEEIHGF-ALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYS 485
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVP 178
NG +A+ LF M+ +G+ P ++ + + ACS + G L F + + E +
Sbjct: 486 QNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIF 545
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++DMY + G + ++ + E + + W ++ IH
Sbjct: 546 VS---SSIIDMYAKGGCIGLSQRIFDRLR-EKDVASWNVIIAGYGIH 588
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 76/121 (62%), Gaps = 2/121 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP+R++VSW ++I G++E GF +E+ + F+EM +E+ P+ ATLV VL C+ +
Sbjct: 162 MPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIE 221
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH ++ + L+ +V N++I+MY KC + A +F+ K+++SW+++I G
Sbjct: 222 KGMAVHG-LAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGY 280
Query: 120 A 120
A
Sbjct: 281 A 281
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 107/240 (44%), Gaps = 12/240 (5%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L AC + G+ +H +S ++ +I MY CG + VF+ L K
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGL-I 165
++ W+ ++S N A+ +FS +I + PD+ T +I AC+ GL+D GL
Sbjct: 64 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGLGQ 121
Query: 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ M+T ++V ++ MYG+ GL+EEA MP E W +++ C
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP-ERNLVSWNSII--CGFS 178
Query: 226 RN---DEMFDPIRQELVNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
N E F+ R+ LV ++ V T + AG + E + ++GL ++
Sbjct: 179 ENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEE 238
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 179/291 (61%), Gaps = 30/291 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVV WT MI GY + ++AV++F+EM+ K P+ TLV +L+
Sbjct: 260 PVRDVVLWTAMINGYVQFNRFDDAVALFREMQ-IKRVSPDRFTLVALLT----------- 307
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+VG A+I MY KCG + ++++FN L KD SW+++I GLAM
Sbjct: 308 ---------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAM 352
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL+LF+ M+ GV PDD+TFI ++SACSHGGLV++G F++M+ VY+I P+ +
Sbjct: 353 NGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLE 412
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HY C++D+ GRAG L+EAE I + P E ++GALL+ACR H N EM + + + L
Sbjct: 413 HYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRL 472
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V + L++N +A ADRWED K+R +++ +G+KK GCS +EVN
Sbjct: 473 VGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 523
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 97/201 (48%), Gaps = 7/201 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I + + G +AV +F+++ + + P+ T V A + + G+ V+ ++
Sbjct: 100 YNLVIKAFTKNGSFRKAVLLFRQL-REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFV 158
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N++++MY + G V QVF + +D++SW+ +ISG A
Sbjct: 159 -VKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDA 217
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+ +F + + + + +++S + G +D+ LF+ S V ++V T +++
Sbjct: 218 VDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER-SPVRDVVLWT----AMIN 272
Query: 189 MYGRAGLLEEAEAFIREMPIE 209
Y + ++A A REM I+
Sbjct: 273 GYVQFNRFDDAVALFREMQIK 293
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 19/154 (12%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ A ++FN + + ++ VI NG R+A+ LF + G+ PD+ T+ +
Sbjct: 80 GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQT----QHYAC--VVDMYGRAGLLEEAEAFIRE 205
A G V +G VY V ++ Y C ++DMY G ++ E
Sbjct: 140 KAIGCLGEVREG-------EKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEE 192
Query: 206 MPIEAEWSVWGALLNA---CRIHRNDEMFDPIRQ 236
MP + + W L++ CR R ++ D RQ
Sbjct: 193 MP-QRDVVSWNVLISGYVKCR--RYEDAVDVFRQ 223
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 197/295 (66%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +++W ++I GY + G +E++ +F M ++ +P+ AT+V++LS+CS + AL F
Sbjct: 250 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG-FQPDSATIVSLLSSCSQLGALDF 308
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G ++H Y +DL+V ++G ++INMY +CG+V A +VF+ + +++++W+ +ISG
Sbjct: 309 GCWLHDYADGNGFDLNV--VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY 366
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G GRQA++LF+ M G P+++TF+A++SAC+H GL+D G +F +M Y +VP
Sbjct: 367 GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 426
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+H C+VDM+GRAGLL +A FI++ +P E +VW ++L ACR+HRN ++ + + +
Sbjct: 427 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHV 486
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
++ + + G + ++SN +A A R + +R+ + R LKK+ G S IE+N +
Sbjct: 487 LSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 541
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 10/228 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + +++ ++ GF + V ++ M + + N T +V+ AC+ +SAL
Sbjct: 149 VPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRL 207
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS++ V A+I +Y K D+ +A +VF+ + + +I+W+++ISG
Sbjct: 208 GKEIHSHVMV-CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYD 266
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYE--IV 177
NG ++++ LF LM+ +G PD T ++L+S+CS G +D G L A ++ +V
Sbjct: 267 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 326
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T +++MY R G + +A M E W A+++ +H
Sbjct: 327 LGTS----LINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGMH 369
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++VSWT ++ G+AE+G EA+S+F +MEK N T++++L+AC+ L
Sbjct: 275 MPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDN-GTVMSILAACAESGLLGL 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + + + NA+++MY KCG + IA VFN + KD++SW+ ++ GLA
Sbjct: 334 GEKIHASIKNN-NFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLA 392
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LF M G P+ VT I ++ AC+H GL+D G+ F M Y +VP+
Sbjct: 393 MHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEV 452
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G LEEA IR MP+ +WG LL ACR+H E+ + LV
Sbjct: 453 EHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVE 512
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G F+++SN +A A W R +R +G KK +G S IEVN +
Sbjct: 513 LEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIEVNNEV 564
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 115/239 (48%), Gaps = 16/239 (6%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RDVVSW +MI G A+ G EEA VF EM E + + +L + +
Sbjct: 184 RRDVVSWNSMISGLAKGGLYEEARKVFDEM-----PEKDGISWNTMLDGYVKVGKMDDAF 238
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ + R +S S +V Y K GD+ +A +F+ + K+++SW+ ++SG A
Sbjct: 239 KLFDEMPERNVVSWSTMVLG-----YCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEK 293
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G R+A+ LF M + D+ T +++++AC+ GL+ G + ++ T+
Sbjct: 294 GLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKN-NNFKCTTEI 352
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQE 237
+VDMY + G L A ++ + S W A+L +H + E+F +++E
Sbjct: 353 SNALVDMYAKCGRLNIAYDVFNDIKNKDVVS-WNAMLQGLAMHGHGVKALELFKRMKEE 410
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V + TMI ++ +A + F M++ N T +L C+ L + V
Sbjct: 82 NVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADN-FTFPFLLKVCTGNVWLPVIESV 140
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--AIQVF-NMLAYKDMISWSTVISGLAM 121
H+ I ++ V N++I+ Y KCG GI A ++F +M A +D++SW+++ISGLA
Sbjct: 141 HAQIE-KFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAK 199
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G +A ++F M D +++ ++ G +D LF M P+
Sbjct: 200 GGLYEEARKVFDEMPEK----DGISWNTMLDGYVKVGKMDDAFKLFDEM-------PERN 248
Query: 182 --HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
++ +V Y +AG +E A +MP++ W++
Sbjct: 249 VVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTI 285
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 197/295 (66%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +++W ++I GY + G +E++ +F M ++ +P+ AT+V++LS+CS + AL F
Sbjct: 186 MPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESG-FQPDSATIVSLLSSCSQLGALDF 244
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G ++H Y +DL+V ++G ++INMY +CG+V A +VF+ + +++++W+ +ISG
Sbjct: 245 GCWLHDYADGNGFDLNV--VLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGY 302
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G GRQA++LF+ M G P+++TF+A++SAC+H GL+D G +F +M Y +VP
Sbjct: 303 GMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPG 362
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+H C+VDM+GRAGLL +A FI++ +P E +VW ++L ACR+HRN ++ + + +
Sbjct: 363 VEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHV 422
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
++ + + G + ++SN +A A R + +R+ + R LKK+ G S IE+N +
Sbjct: 423 LSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTY 477
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 118/228 (51%), Gaps = 10/228 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + +++ ++ GF + V ++ M + + N T +V+ AC+ +SAL
Sbjct: 85 VPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRL 143
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS++ V A+I +Y K D+ +A +VF+ + + +I+W+++ISG
Sbjct: 144 GKEIHSHVMV-CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYD 202
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYE--IV 177
NG ++++ LF LM+ +G PD T ++L+S+CS G +D G L A ++ +V
Sbjct: 203 QNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVV 262
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T +++MY R G + +A M E W A+++ +H
Sbjct: 263 LGTS----LINMYTRCGNVSKAREVFDSMK-ERNVVTWTAMISGYGMH 305
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 185/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV+WTTM+ GY + E ++ +F+ M + PN+ T + L ACS ++ L
Sbjct: 284 MPERNVVTWTTMMNGYLKGKQSELSLGLFRGMLMSG-IRPNQVTFLGALDACSDLATLCE 342
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I + V VG+A++N+Y KCG+VG+A ++F++ KD+ISW+ +I+ A
Sbjct: 343 GKQVHQMI-CKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYA 401
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M NG P+DVT++ L+SACSH GLVD+GL +F++M I +
Sbjct: 402 HHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRD 461
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ RAG L++A+ I + I+ A SVW ALL C H N+ + + + L+
Sbjct: 462 EHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLI 521
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ L+SN +A A +W++A +IR E+ GLKK+ GCSWIEV
Sbjct: 522 QAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEV 570
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV++WTTM+ G A G +EA +F M + NV+S + IS +
Sbjct: 191 MPERDVMAWTTMVDGVARSGNVDEARLLFDSMPER-----------NVVSWNAMISGYTR 239
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + ++ N +I +++ D+ A ++F+ + +++++W+T+++G
Sbjct: 240 NHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGY 299
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+L LF M+++G+ P+ VTF+ + ACS
Sbjct: 300 LKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACS 335
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDVVSWT ++ YA RG +A S+F +A N T +LS + +
Sbjct: 67 PERDVVSWTALVSAYARRGMLRDARSLFDR----SDARRNVVTWTALLSGYARAGLVDEA 122
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R N+V N ++ Y G G A +F+ + +D SW+ +++ L
Sbjct: 123 EVLFQRMPQR------NVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLV 176
Query: 121 MNGCGRQALQLFSLMIINGVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G +A +LF G P D + + ++ + G VD+ +LF +M P
Sbjct: 177 RSGSVDKARELF------GRMPERDVMAWTTMVDGVARSGNVDEARLLFDSM-------P 223
Query: 179 QTQ--HYACVVDMYGRAGLLEEAEAFIREMP 207
+ + ++ Y R L+EA +MP
Sbjct: 224 ERNVVSWNAMISGYTRNHRLDEALDLFTKMP 254
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 55/222 (24%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW TM+ YA G +A ++F M ++A
Sbjct: 129 MPQRNVVSWNTMLEAYAVAGRAGDACALFDRM-PVRDA---------------------- 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + N ++ M V+ G V A ++F + +D+++W+T++ G+A
Sbjct: 166 GSW------------------NILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVA 207
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A LF M V V++ A+IS + +D+ L LF M P
Sbjct: 208 RSGNVDEARLLFDSMPERNV----VSWNAMISGYTRNHRLDEALDLFTKM-------PHR 256
Query: 181 QHYACVVDMYG--RAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+C + + G + L+ A EMP E W ++N
Sbjct: 257 DIASCNIMITGFIQNKDLKRARKLFDEMP-ERNVVTWTTMMN 297
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +DV +W+ +I GY + EA+ +F+E+ PNE T++ V+SAC+ + L
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH YI TR S + N++I+M+ KCGD+ A ++F+ ++YKD+ISW+++++G A
Sbjct: 301 GRWVHDYI-TRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFA 359
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL F LM + PD++TFI +++ACSH GLV +G LF + +Y + ++
Sbjct: 360 LHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKS 419
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGLL EA FIR MP++ + ++WG++L ACR++ N E+ + + L+
Sbjct: 420 EHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLK 479
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A W + K+R+ + G++K GCS + ++
Sbjct: 480 LEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVID 528
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 131/232 (56%), Gaps = 17/232 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ V WT+MI GY + EA+ ++++ME+ + P+E T+ ++SAC+ + L
Sbjct: 140 MGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATLVSACAELKDLGV 198
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS+I D+ + ++G+A++NMY KCGD+ A QVF+ L+ KD+ +WS +I G
Sbjct: 199 GMKLHSHIR-EMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYV 257
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +ALQLF + + + P++VT +A+ISAC+ G ++ G V++ + +
Sbjct: 258 KNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-------RWVHDYITR 310
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
TQ V +DM+ + G ++ A+ M + S W +++N +H
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLIS-WNSMVNGFALH 361
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 107/217 (49%), Gaps = 7/217 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV++W +M+ + A+ + EM + P+ T ++L C+ + G+ +
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + +Y L + ++NMY CGD+ A +F + +++ + W+++ISG N C
Sbjct: 102 HGQV-VKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHC 160
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY- 183
+AL L+ M +G PD+VT L+SAC+ L D G + K S + E+ +
Sbjct: 161 PNEALLLYKKMEEDGFSPDEVTMATLVSACAE--LKDLG-VGMKLHSHIREMDMKICAVL 217
Query: 184 -ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +V+MY + G L+ A ++ + + W AL+
Sbjct: 218 GSALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALI 253
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 186/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R++V+W ++I GYA G EA+++F+EM + EP+ T+V++LSAC+ + AL+
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREM-GLRGVEPDGFTMVSLLSACAELGALAL 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ + L + GNA++++Y KCG + A +VF+ + K ++SW+++I GLA
Sbjct: 260 GRRAHVYM-VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G++AL+LF + G+ P ++TF+ ++ ACSH G+VD+G FK M Y IVP+
Sbjct: 319 VNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKI 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+++A FI+ MP++ VW LL AC IH + + + R +L+
Sbjct: 379 EHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQ 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D +K+R + R G+KK G S +E+
Sbjct: 439 LEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVEL 486
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 8/217 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ +W TMI GYAE A+ ++++M + EP+ T +L A + + + G+ V
Sbjct: 104 NIFTWNTMIRGYAESENPMPALELYRQMHVSC-IEPDTHTYPFLLKAIAKLMDVREGEKV 162
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS I+ R V N +++MY CG A ++F ++A +++++W++VI+G A+NG
Sbjct: 163 HS-IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGR 221
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF M + GV PD T ++L+SAC+ G + G +A + ++ +A
Sbjct: 222 PNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR---RAHVYMVKVGLDGNLHA 278
Query: 185 --CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y + G + +A EM E W +L+
Sbjct: 279 GNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 314
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 12/219 (5%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNL-VGNAVI-NMYVKCGDVGIAIQVFNM 103
+ +L +C+S S F Q +H++ S R+ + ++N +G +I + C + A Q+F+
Sbjct: 43 IALLLSCAS-SKFKFRQ-IHAF-SIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQ 99
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ ++ +W+T+I G A + AL+L+ M ++ + PD T+ L+ A + V +G
Sbjct: 100 IQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREG 159
Query: 164 LILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ A+ +E + Q+ +V MY G E A E+ E W +++N
Sbjct: 160 EKVHSIAIRNGFESLVFVQN--TLVHMYAACGHAESAHKLF-ELMAERNLVTWNSVINGY 216
Query: 223 RIH-RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD 260
++ R +E R+ + +GV F ++S A A+
Sbjct: 217 ALNGRPNEALTLFRE--MGLRGVEPDGFTMVSLLSACAE 253
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 181/286 (63%), Gaps = 2/286 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ + SW MI GYA+ G E+A+S+FQEM+K E PN T+ ++LSAC+ + ALS G+
Sbjct: 371 EKSLASWNAMISGYAQNGLTEKAISLFQEMQKC-EVRPNPVTVTSILSACAQLGALSLGK 429
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+VH I+ R + V A+I+MY KCG + A ++F+M+ K+ ++W+ +ISG ++
Sbjct: 430 WVHDLIN-RESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLH 488
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL LF+ M+ + V P VTF++++ ACSH GLV +G +F++M + P +H
Sbjct: 489 GYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEH 548
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GRAG L++A FIR+MP+E VWGALL AC IH++ + +L
Sbjct: 549 YACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELD 608
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+VG + L+SN ++ + +A +R ++R L K GC+ IEV
Sbjct: 609 PQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEV 654
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 121/253 (47%), Gaps = 20/253 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D+VS+ MI GY E +V +F+E+ + E + N +++V ++ L +
Sbjct: 270 QPDLVSYNAMISGYTCNNETESSVRLFKELLVSGE-KVNSSSIVGLIPVFFPFGHLHLTR 328
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + T+ + ++ V A+ +Y + ++ A +F+ + K + SW+ +ISG A N
Sbjct: 329 CIHGF-CTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQN 387
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+ LF M V P+ VT +++SAC+ G + G V++++ +
Sbjct: 388 GLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLG-------KWVHDLINRESF 440
Query: 183 YA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 232
+ ++DMY + G + EA+ MP E W A+++ +H +F+
Sbjct: 441 ESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAMISGYGLHGYGHEALNLFN 499
Query: 233 PIRQELVNKKGVS 245
+ V+ GV+
Sbjct: 500 EMLHSRVSPTGVT 512
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 101/236 (42%), Gaps = 32/236 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD V W TM+ G + +EA+ +F +M K + T+ VL + + L+
Sbjct: 167 MLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF-DSTTVAAVLPGVAELQDLAL 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++ + V + +Y KCG++ A +F + D++S++ +ISG
Sbjct: 226 GMGIQC-LAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYT 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALI-----------SACSHG----GLVDQGLI 165
N +++LF ++++G + + + LI + C HG V
Sbjct: 285 CNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSS 344
Query: 166 LFKAMSTVYEIVPQTQHYACVVDM---------------YGRAGLLEEAEAFIREM 206
+ A++TVY + + + + D Y + GL E+A + +EM
Sbjct: 345 VSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEM 400
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 4/151 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D+ + +I ++ AVS++ + K+ EP+ T V+S SS+
Sbjct: 68 IPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLL 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
DL VG+A++ Y K V A +VF+ + +D + W+T++SGL
Sbjct: 128 LHAHSIVAGFGSDL----FVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLV 183
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
N C +A+ +F M+ G+ D T A++
Sbjct: 184 KNSCFDEAILIFGDMVKGGIGFDSTTVAAVL 214
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
MP+++ V+W MI GY G+ EA+++F EM ++ P T ++VL ACS
Sbjct: 470 MPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSR-VSPTGVTFLSVLYACS 521
>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 178/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW T+I GY + G EA+ V++ ME+ +E + N+ T V++L+A + + AL
Sbjct: 436 IPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQ 495
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ + +L + VG +I++Y KCG + A+ +F + + + W+ +IS
Sbjct: 496 GMRIHGHL-IKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHG 554
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL+LF M GV PD VTFI+L+SACSH GLVD+G F M Y I P
Sbjct: 555 IHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSL 613
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE A FI++MP+ + S+WGALL ACRIH N E+ L
Sbjct: 614 KHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFE 673
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + L+SN +A +WE +K+R R GLKK G S IEVN +
Sbjct: 674 VDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRV 725
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 130/252 (51%), Gaps = 18/252 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSW ++I Y + A F +M+ EP+ TLV++ S + +
Sbjct: 337 RDVVSWNSIIAAYEQNDDPVTARGFFFKMQ-LNGLEPDLLTLVSLASIAAQSRDYKNSRS 395
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH +I R L + ++GNAV++MY K G + A +VFN++ KD++SW+T+ISG NG
Sbjct: 396 VHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNG 455
Query: 124 CGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+A++++ +M + + T++++++A +H G + QG M ++ H
Sbjct: 456 LASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQG------MRIHGHLIKTNLH 509
Query: 183 Y-----ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDP 233
C++D+YG+ G L +A ++P E+ W A+++ IH + E +F
Sbjct: 510 LDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESS-VPWNAIISCHGIHGHGEKALKLFRE 568
Query: 234 IRQELVNKKGVS 245
++ E V V+
Sbjct: 569 MQDEGVKPDHVT 580
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 25/232 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI G + G +A+ V EM + + + T+ ++L C+ + +S
Sbjct: 233 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGINMDSVTVASILPVCAQLGDIST 291
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y+ ++ L V NA+INMY K G++G A +VF + +D++SW+++I+
Sbjct: 292 ATLIHLYV-IKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYE 350
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N A F M +NG+ PD +T ++L S + HG ++ +G ++
Sbjct: 351 QNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAV 410
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ V+DMY + G+++ A +P++ S W L++
Sbjct: 411 VIG-----------NAVMDMYAKLGVIDSAHKVFNLIPVKDVVS-WNTLISG 450
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 13/235 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DV +W +MI Y G EA+ F ++ + + + T VL AC + L
Sbjct: 134 IQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT---LVD 190
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + V ++I+MY + G VGIA +F+ + ++DM SW+ +ISGL
Sbjct: 191 GRKIHCWV-FKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLI 249
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQ 179
NG QAL + M + G+ D VT +++ C+ G + LI + E
Sbjct: 250 QNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELF 309
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ +++MY + G L +A+ ++M + S W +++ A +ND DP+
Sbjct: 310 VSN--ALINMYAKFGNLGDAQKVFQQMFLRDVVS-WNSIIAA--YEQND---DPV 356
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLM 135
SN + ++N+Y GDV ++ F+ + KD+ +W+++IS NG R+A+ F L+
Sbjct: 107 SNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLL 166
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRA 193
++ D TF ++ AC LVD K V+++ Q + A ++ MY R
Sbjct: 167 LVTKFQADFYTFPPVLKACQ--TLVDGR----KIHCWVFKLGFQWDVFVAASLIHMYSRF 220
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVSVGT 248
G + A + +MP + W A+++ + N ++ D +R E +N V+V +
Sbjct: 221 GFVGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVAS 278
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 183/292 (62%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SWT++I G C EA+ F++M +++PN TL++ LSAC+ + AL
Sbjct: 398 IPDKDVISWTSVINGLRINNRCFEALIFFRKM--ILKSKPNSVTLISALSACARVGALMC 455
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++ + + + + NA++++YV+CG + A+ FN L KD+ +W+ +++G A
Sbjct: 456 GKEIHAH-ALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLTGYA 513
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G ++LF M+ + + PDDVTFI+L+ ACS G+V +GL F+ M Y I P
Sbjct: 514 QKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNL 573
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ GRAG L EA FI MPI+ + ++WGALLNACRIHR+ + + Q +
Sbjct: 574 KHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFK 633
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S+G + L+ N +A + +W++ K+R ++ GL GCSW+EV +
Sbjct: 634 QDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKV 685
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 139/263 (52%), Gaps = 23/263 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SW MI GY E C E + +F M + +P+ T+ +V+SAC +
Sbjct: 196 MPTRDRISWNAMISGYFENDECLEGLELFFRMRELS-IDPDLMTMTSVISACELLGDERL 254
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +HSY+ T YD ++S V N++I MY+ G A VF+ + +D++SW+T+ISG
Sbjct: 255 GTQLHSYVVRTAYDGNIS--VYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +AL+ + M I G PD+VT +++SAC+ G +D G+ L +E+ +
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKL-------HELAER 365
Query: 180 TQHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDP 233
T H VV DMY + +E+A ++P + + W +++N RI N+ F+
Sbjct: 366 TGHILYVVVANSLIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVINGLRI--NNRCFEA 422
Query: 234 I---RQELVNKKGVSVGTFALMS 253
+ R+ ++ K SV + +S
Sbjct: 423 LIFFRKMILKSKPNSVTLISALS 445
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 6/223 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+ SW ++GGY + GF +EA+ ++ + P+ T +VL +C+ L
Sbjct: 95 MGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG-IRPDVYTFPSVLRSCAGAMDLVR 153
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R+D + V NA+I MYVKCGDV A +F+ + +D ISW+ +ISG
Sbjct: 154 GREVHAHV-VRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYF 212
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQ 179
N + L+LF M + PD +T ++ISAC G G L + T Y+
Sbjct: 213 ENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYD--GN 270
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
Y ++ MY G +EAE+ M S W +++ C
Sbjct: 271 ISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVS-WTTIISGC 312
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 5/215 (2%)
Query: 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL 79
G E+A+ M++ K E V ++ C + S G+YV + + +S
Sbjct: 12 GNLEQALKHLASMQEVK-IPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVR 70
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+GNA+++M+V+ GDVG A VF + +D+ SW+ ++ G G +AL L+ ++ G
Sbjct: 71 LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ PD TF +++ +C+ + +G + A ++ ++ MY + G + A
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREV-HAHVVRFDFDMDVDVVNALITMYVKCGDVVSA 189
Query: 200 EAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+MP S W A+++ NDE + +
Sbjct: 190 RMLFDKMPTRDRIS-WNAMISG--YFENDECLEGL 221
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 188/288 (65%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +++VSW TMIGGY++ EA+ +F +M+K + +P++ T+ VL AC+ ++AL
Sbjct: 421 LPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQK--QLKPDDVTMACVLPACAGLAALEK 478
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I + S + V A+++MYVKCG + +A Q+F+M+ KDMI W+ +I+G
Sbjct: 479 GREIHGHILRKGYFSDLH-VACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYG 537
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+ F M + G+ P++ +F +++ AC+H GL+ +G LF +M + I P+
Sbjct: 538 MHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKL 597
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R+G L A FI MPI+ + ++WGALL+ CRIH + E+ + + + +
Sbjct: 598 EHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFE 657
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + L++N +A A++WE+ KI+ I + GLK GCSWIEV
Sbjct: 658 LEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEV 705
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VSWT++I + G EA+ +F EM+ +K P+ + +V+ AC+ ++L
Sbjct: 320 MGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQ-SKGLRPDIYAVTSVVHACACSNSLDK 378
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH++I + ++ + V NA++NMY KCG + A +F+ L K+++SW+T+I G +
Sbjct: 379 GREVHNHIK-KNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYS 437
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYE 175
N +ALQLF L + + PDDVT ++ AC+ G G IL K +
Sbjct: 438 QNSLPNEALQLF-LDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS--- 493
Query: 176 IVPQTQHYAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
H AC +VDMY + GLL A+ +P + + +W ++ +H
Sbjct: 494 ----DLHVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMH 539
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 7/211 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVVSW +MI G GF + F +M + + ATLVNVL AC+++ L+
Sbjct: 219 LSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLG-VDVDSATLVNVLVACANVGNLTL 277
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y + S + N +++MY KCG++ A +VF + ++SW+++I+
Sbjct: 278 GRALHAY-GVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHV 336
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVP 178
G +A+ LF M G+ PD +++ AC+ +D+G + + + + +P
Sbjct: 337 REGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLP 396
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ +++MY + G +EEA ++P++
Sbjct: 397 VSN---ALMNMYAKCGSMEEANLIFSQLPVK 424
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 129/271 (47%), Gaps = 13/271 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ YA+ G E+V +F++M++ + T VL ++ + + + VH Y+
Sbjct: 126 WNLLMSEYAKIGNYRESVGLFEKMQELG-IRGDSYTFTCVLKGFAASAKVRECKRVHGYV 184
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ N V N++I Y KCG+V A +F+ L+ +D++SW+++ISG MNG R
Sbjct: 185 -LKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNG 243
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L+ F M+ GV D T + ++ AC++ G + G L A ++D
Sbjct: 244 LEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRAL-HAYGVKAGFSGGVMFNNTLLD 302
Query: 189 MYGRAGLLEEA-EAFIR--EMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
MY + G L A E F++ E I + S+ A + + +FD ++ KG+
Sbjct: 303 MYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQS-----KGLR 357
Query: 246 VGTFALMSNTFAGA--DRWEDANKIRDEIRR 274
+A+ S A A + + ++ + I++
Sbjct: 358 PDIYAVTSVVHACACSNSLDKGREVHNHIKK 388
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 100/212 (47%), Gaps = 15/212 (7%)
Query: 21 FCE--EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
FCE + + + + +++ +E T +VL C+ + +L G+ VHS IS+ +++
Sbjct: 34 FCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISSN-GMAIDE 92
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
++G ++ MYV CGD+ ++F+ + + W+ ++S A G R+++ LF M
Sbjct: 93 VLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQEL 152
Query: 139 GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
G+ D TF ++ + V + G +L + +V ++ Y +
Sbjct: 153 GIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNS------LIAAYFKC 206
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
G +E A E+ + + W ++++ C ++
Sbjct: 207 GEVESARILFDELS-DRDVVSWNSMISGCTMN 237
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWT +IG YA+ EEA+ VF+ M+ + EP+ L++VLSAC + +
Sbjct: 164 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ-VEGIEPDGVALLSVLSACGDLGVVDL 222
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + NA+I+MYVKCG V A++VF + K +++W+T+I+G A
Sbjct: 223 GEWVHRFV-LRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFA 281
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A++LF M V P+D+TF+A++S CSH GL D G FK M + Y+I P+
Sbjct: 282 LHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRV 341
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA I++MP +A ++WGALL A R H + E+ + L+
Sbjct: 342 EHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIE 401
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A +RW+ ++R +R GL+ G S I+V+
Sbjct: 402 LEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVD 450
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 38 AEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
A+P+ A+LV +C S+++ + V + D+ + N +I+ YVK GD+
Sbjct: 104 ADPHASASLVQAYCSCGSVAS---ARRVFDETAAYADV----VSWNVMIDGYVKSGDLAR 156
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A ++F+++ ++++SW+ VI A +A+++F M + G+ PD V ++++SAC
Sbjct: 157 ARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGD 216
Query: 157 GGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
G+VD G + F + + +P ++DMY + G +++A
Sbjct: 217 LGVVDLGEWVHRFVLRRGLCQEIPLMN---AIIDMYVKCGSVKKA 258
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 188/294 (63%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V++WT M+ GY + G EEA+ VF +M T E +PN T V VL ACS ++ L+
Sbjct: 245 MQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
GQ +H IS + S V +A+INMY KCG++ A ++F+ +L+ +D+ISW+ +I+
Sbjct: 305 GQQIHQMIS-KTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAA 363
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G G++A+ LF+ M GV +DVTF+ L++ACSH GLV++G F + I
Sbjct: 364 YAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQL 423
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ HYAC+VD+ GRAG L+EA I + E +VWGALL C +H N ++ + +++
Sbjct: 424 REDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKI 483
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + GT++L+SN +A +W++A +R ++ MGLKK+ GCSWIEV ++
Sbjct: 484 LKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTV 537
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 36/262 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI----- 55
MP R+VVSW TM+ GYA G ++A+ +F+ M + N T++ L C I
Sbjct: 90 MPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWN--TIITALVQCGRIEDAQR 147
Query: 56 -----------------SALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIA 97
+ L+ V + + V N+V NA+I Y + + A
Sbjct: 148 LFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEA 207
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+Q+F + +DM SW+T+I+G NG +A +LF M V +T+ A+++
Sbjct: 208 LQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNV----ITWTAMMTGYVQH 263
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR-AGLLE--EAEAFIREMPIEAEWSV 214
GL ++ L +F M E+ P T + V+ AGL E + I + + V
Sbjct: 264 GLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCV 323
Query: 215 WGALLN---AC-RIHRNDEMFD 232
AL+N C +H +MFD
Sbjct: 324 VSALINMYSKCGELHTARKMFD 345
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 108/247 (43%), Gaps = 32/247 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQ-------------------EMEKTKEAEP- 40
MP+RD+ WTTMI GY + G EA +F + + KEAE
Sbjct: 27 MPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNVVTWTAMVNGYIKFNQVKEAERL 86
Query: 41 -NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAI 98
E L NV+S + + + + + N+V N +I V+CG + A
Sbjct: 87 FYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQ 146
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
++F+ + +D++SW+T+++GLA NG A LF M + V V++ A+I+ +
Sbjct: 147 RLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNV----VSWNAMITGYAQNR 202
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
+D+ L LF+ M + ++ + + G L AE EM E W A+
Sbjct: 203 RLDEALQLFQRMPE-----RDMPSWNTMITGFIQNGELNRAEKLFGEMQ-EKNVITWTAM 256
Query: 219 LNACRIH 225
+ H
Sbjct: 257 MTGYVQH 263
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 18/194 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I+ + G++ A +VF + +D+ W+T+I+G G R+A +LF
Sbjct: 5 NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRW---DAK 61
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
+ VT+ A+++ V + LF M + + +VD Y R GL ++A
Sbjct: 62 KNVVTWTAMVNGYIKFNQVKEAERLFYEMP-----LRNVVSWNTMVDGYARNGLTQQALD 116
Query: 202 FIREMPIE--AEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
R MP W ++ AL+ RI +FD ++ V ++ M A
Sbjct: 117 LFRRMPERNVVSWNTIITALVQCGRIEDAQRLFDQMKDR-------DVVSWTTMVAGLAK 169
Query: 259 ADRWEDANKIRDEI 272
R EDA + D++
Sbjct: 170 NGRVEDARALFDQM 183
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 188/302 (62%), Gaps = 17/302 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK---------------EAEPNEATL 45
MP R+VVS+TTMI GYA+ G A VF+E + +P+E +
Sbjct: 246 MPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIM 305
Query: 46 VNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
V+++SACS + +L ++V Y+ + D+ ++++ A+I+M KCG + A ++F +
Sbjct: 306 VSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATKLFEEM 364
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
+D+IS+ +++ GL+++GCG QA+ LFS M+ G+ PDDV F +++ACS GLVD+G
Sbjct: 365 PKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGC 424
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 224
F++M T Y IVP HYAC+VD+ GRAG L+EA ++ MP+E WGALL AC++
Sbjct: 425 YYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKL 484
Query: 225 HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
H + E+ + + +L + + G + L+SN +A A++W D + +R+++R G++K GCS
Sbjct: 485 HCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544
Query: 285 WI 286
WI
Sbjct: 545 WI 546
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W T I GY+E VS+F M+++ +A P++ T +++ ACS + + G H
Sbjct: 88 TVLWNTYIKGYSENYSVSLTVSLFIRMKRS-DAVPDKFTYPSLIKACSKVCGVKEGVAFH 146
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R + V ++I++Y KCG++ A +VF+ + ++++SW+ +I+G A
Sbjct: 147 GS-AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDL 205
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HY 183
+A +LF M V++ A+IS G V G + ++ +++ +P +
Sbjct: 206 VEARKLFDEMPEKNA----VSWNAIIS-----GYVKCGDL--RSARKMFDEMPHRNVVSF 254
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D Y ++G + A E P E + W AL+
Sbjct: 255 TTMIDGYAKSGDMASARFVFEEAP-ERDVVAWSALI 289
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 57/223 (25%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT MI GYA EA +F EM + +A+S+
Sbjct: 184 MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEK--------------------NAVSW 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
NA+I+ YVKCGD+ A ++F+ + +++++S++T+I G A
Sbjct: 224 ---------------------NAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYA 262
Query: 121 MNGCGRQALQLF-----------SLMIIN-----GVFPDDVTFIALISACSHGGLVDQGL 164
+G A +F S +I V PD+ ++L+SACS G ++
Sbjct: 263 KSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAK 322
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ + V + A ++DM + G ++ A EMP
Sbjct: 323 WVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMP 365
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Query: 28 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87
F + T + +++ +L AC++ S L + VH+ I R L + + + + +
Sbjct: 11 TFPDYLPTLRSFDTTSSISTLLKACTTTSTL---EQVHARI-IRKGLHQDHFLISQFLTL 66
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ VFN ++ + W+T I G + N + LF M + PD T+
Sbjct: 67 CNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTY 126
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+LI ACS V +G + F + + ++D+YG+ G + A EM
Sbjct: 127 PSLIKACSKVCGVKEG-VAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEM 184
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV W ++ GY + +EA+ +F +M++ EP++ T+VN+LSACS + AL
Sbjct: 314 MPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAM-VEPDDITMVNLLSACSQLGALEM 372
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI R +S+S ++G +++MY KCG++ AI+VF + K+ ++W+ +ISGLA
Sbjct: 373 GMWVHHYIDRRR-VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLA 431
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A++ F MI G+ PD++TFI ++SAC H GLV +G F M + Y + +
Sbjct: 432 NHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKM 491
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EAE + MP+E + VWGAL ACR+H N + + +LV
Sbjct: 492 KHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVE 551
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++N +A A+ + A+K+R +R +G++K GCS IE+N
Sbjct: 552 LDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELN 600
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 123/253 (48%), Gaps = 34/253 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW T+IGGY RG EA+ +F M P+E T++ V+S + + L G+
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H Y+ + + + + + N V++MY+KCGD+ A VF + K ++SW+T+I G A G
Sbjct: 244 LHGYVES-HGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFG 302
Query: 124 C-------------------------------GRQALQLFSLMIINGVFPDDVTFIALIS 152
G++AL+LF M V PDD+T + L+S
Sbjct: 303 LMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLS 362
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G ++ G+ + + + +VDMY + G +E+A +E+P E
Sbjct: 363 ACSQLGALEMGMWVHHYIDR-RRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP-EKNA 420
Query: 213 SVWGALLNACRIH 225
W A+++ H
Sbjct: 421 LTWTAMISGLANH 433
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 94/186 (50%), Gaps = 7/186 (3%)
Query: 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV-HSYISTRYDLSV 76
+RG + ++ + + A P+ T +L AC+ + ++G V + +S + V
Sbjct: 98 DRGLVTRCLPLYCSL--LRSARPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADV 155
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
V NA ++ C + A ++F+ +D++SW+T+I G G R+AL++F M+
Sbjct: 156 --FVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMV 213
Query: 137 ING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
+G V PD+VT I ++S + ++ G L + + + + + V+DMY + G
Sbjct: 214 GDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVES-HGVRCTVRLMNVVMDMYIKCGD 272
Query: 196 LEEAEA 201
LE A++
Sbjct: 273 LERAKS 278
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 188/285 (65%), Gaps = 3/285 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WT MI GY + G +A+ VF+ M ++ PN TL +LSA SS+++L+ G+ +
Sbjct: 338 DVVAWTAMIVGYVQNGLNNDAIEVFKTMV-SEGPRPNSFTLAAMLSASSSVTSLNHGKQI 396
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGLAMNG 123
H+ + R ++S VGNA+ MY K G + A +VFN+L +D +SW+++I LA +G
Sbjct: 397 HAS-AIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHG 455
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A++LF M+ G+ PD +T++ ++SAC+HGGLV+QG F M V++I P HY
Sbjct: 456 LGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHY 515
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD++GRAGLL+EA F+ MP+E + WG+LL++C++++N ++ + L+ +
Sbjct: 516 ACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEP 575
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G ++ ++N ++ +W+DA KIR ++ G+KK+ G SW+++
Sbjct: 576 NNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQI 620
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 119/259 (45%), Gaps = 37/259 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD+VSW +MI G + GF EA+ F + K +P+ +L + LSAC+++ LSF
Sbjct: 199 LSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSF 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ +H YI R S VGNA+I+M
Sbjct: 259 GKQIHGYI-VRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNG 317
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A Q+FN L D+++W+ +I G NG A+++F M+ G P+ T
Sbjct: 318 YVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTL 377
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++SA S ++ G I A+ + + P + + MY +AG + A +
Sbjct: 378 AAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLL 435
Query: 207 PIEAEWSVWGALLNACRIH 225
+ W +++ A H
Sbjct: 436 RQNRDTVSWTSMIMALAQH 454
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD VSWTT+I GY + G E+A+ +F +M K K P + TL NVL++C++ +
Sbjct: 67 IPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDK-VLPTQFTLTNVLASCAATGSRGI 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS++ + L V N+++NMY K GD+ +A VF+ + ++ SW+ +IS L
Sbjct: 126 GKKVHSFV-VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS-LH 183
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
MN CGR L L +++ D V++ ++I+ C+ G ++ L F ++ + P
Sbjct: 184 MN-CGRVDLALAQFELLSE--RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ Y K G + A QVF+++ +D +SW+T+I G G A+++F M+ + V
Sbjct: 45 NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGL 195
P T ++++C+ G G V+ V + +ACV ++MY + G
Sbjct: 105 PTQFTLTNVLASCAATGSRGIG-------KKVHSFVVKLGLHACVPVANSLLNMYAKTGD 157
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
L+ A+ M + S W A+++ +H N
Sbjct: 158 LKMAKVVFDRMKLR-NTSSWNAMIS---LHMN 185
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD VSWT+MI A+ G EEA+ +F++M T +P+ T V VLSAC+ + G+
Sbjct: 439 RDTVSWTSMIMALAQHGLGEEAIELFEQM-LTLGIKPDHITYVGVLSACTHGGLVEQGRS 497
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVIS 117
+ + + + +++++ + G + A + V NM D+I+W +++S
Sbjct: 498 YFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLS 552
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
+ L+ S + N ++N+Y K G A +FN + K SW+T++SG A G +A Q
Sbjct: 3 KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV--- 187
+F L+ + D V++ +I + G + + +F M V + V TQ V
Sbjct: 63 VFDLIPVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDM--VKDKVLPTQFTLTNVLAS 116
Query: 188 -DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
G G+ ++ +F+ ++ + A V +LLN
Sbjct: 117 CAATGSRGIGKKVHSFVVKLGLHACVPVANSLLN 150
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 175/289 (60%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW MI GYA+ GF +EA+ +F M + + PN TLV+VL A S + L
Sbjct: 225 MAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLEL 284
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + + + + +++G+A+++MY KCG + AIQVF L ++I+W+ VI GLA
Sbjct: 285 GKWVHLY-AEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLA 343
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G S M G+ P DVT+IA++SACSH GLVD+G F M + P+
Sbjct: 344 MHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKI 403
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEAE I MP++ + +W ALL A ++H+N ++ + L+
Sbjct: 404 EHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQ 463
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A + W+ +R ++ M ++K GCSWIE++
Sbjct: 464 MAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEID 512
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 155/343 (45%), Gaps = 69/343 (20%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P+R+ +W T+I AE + +A+ VF +M EPN+ T +VL AC+ ++ L+
Sbjct: 75 LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--------------------------- 92
G+ VH + ++ L V ++ MYV CG
Sbjct: 135 EGKQVHGLL-LKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDER 193
Query: 93 --------------------DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
++ A ++F+ +A + ++SW+ +ISG A NG ++A+++F
Sbjct: 194 GREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIF 253
Query: 133 SLMIING-VFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVV 187
M+ G V P+ VT ++++ A S G+++ G L K + +++ + +V
Sbjct: 254 HRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLG-----SALV 308
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVS- 245
DMY + G +E+A +P + W A++ +H + +++F+ + + + K G+S
Sbjct: 309 DMYAKCGSIEKAIQVFERLP-QNNVITWNAVIGGLAMHGKANDIFNYLSR--MEKCGISP 365
Query: 246 --VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT---GC 283
V A++S E + D + +GLK K GC
Sbjct: 366 SDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGC 408
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 24/147 (16%)
Query: 39 EPNEATL-----VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG- 92
+PN A+ V + AC S+ L + VH+++ + + N + ++ +
Sbjct: 7 QPNTASYYPRLDVPQIKACKSMREL---KQVHAFL-VKTGQTHDNAIATEILRLSATSDF 62
Query: 93 -DVGIAIQVFNMLAYKDMISWSTVISGLA-MNGCGRQALQLFSLMIING-VFPDDVTFIA 149
D+G A+ VF+ L ++ +W+TVI LA AL +F M+ V P+ TF +
Sbjct: 63 RDIGYALSVFDQLPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPS 122
Query: 150 LISACS-----------HGGLVDQGLI 165
++ AC+ HG L+ GL+
Sbjct: 123 VLKACAVMARLAEGKQVHGLLLKFGLV 149
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 180/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +V+WT M+ GY G AV F+ M+ T+ EP++ ++V VL AC+ + AL
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGALEL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y R+ + S + NA++ MY KCG + A+Q+F+ +A KD+ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A+ LF+ M G V P+ +TF+ L+SACS+ GLVD+GL F M+ VY + P
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVD+ GR+G + A +R+MP+ A+ VWG+LL+ACR H + + + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ VG +++N +A A RW D R IR ++K GCS IEV
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 42/287 (14%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPN------EATLVNVLSACSSISALSFGQYVH 65
MI YA+ +AV+V+ M + + P+ T +L AC +AL G+ VH
Sbjct: 83 MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVH 142
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+++ R S +V N++I MY + GD+ +A +VF+ + +D++SW+ +IS A G
Sbjct: 143 THV-VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 126 RQALQLFSLMI-------------------------------INGVFPDDVTFIALISAC 154
R+A LF+ M G PDDV+ +A++ AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EW 212
+ G ++ G ++ A + ++ T +++MY + G +++A M + W
Sbjct: 262 AQLGALELGRWIY-AYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320
Query: 213 S-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
S V G L R H +F + +E + V L + ++AG
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAG 367
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 181/290 (62%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+V+WT+MI YA G EA+ +F EM+ T + +P+ LV++L A +S+L+ G+
Sbjct: 529 QKDIVTWTSMINCYANSGLLNEALVLFAEMQST-DVQPDSVALVSILGAIGGLSSLAKGK 587
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH ++ R + + + +++++MY CG + A++VFN + KDM+ W+ +I+ M+
Sbjct: 588 EVHGFL-IRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMH 646
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G+QA+ LF M+ GV PD V+F+AL+ ACSH LV++G M + Y + P +H
Sbjct: 647 GHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEH 706
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YACVVD+ GR+G EEA FI+ MP++ + VW +LL ACR+H+N E+ L+ +
Sbjct: 707 YACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELE 766
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN FA +W +A ++R I GL+K CSWIE+ ++
Sbjct: 767 PDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNV 816
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 8/244 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV SW +MI G + G +A+ +F+ M++ N T V VL C+ ++ L+ G+
Sbjct: 229 RDVASWNSMISGCLQNGMFLQALDLFRGMQRAV-LSMNSYTTVGVLQVCTELAQLNLGRE 287
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + S N+ NA++ MY KCG V A++VF + KD ISW++++S NG
Sbjct: 288 LHAALLKSG--SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNG 345
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A++ S M+ G PD ++L SA H G + G + A + + TQ
Sbjct: 346 LYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEV-HAYAIKQRLDSDTQVG 404
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKK 242
++DMY + +E + M I+ S W ++ + R+ E + R+ K+
Sbjct: 405 NTLMDMYMKCRYIEYSAHVFDRMRIKDHIS-WTTIITCYAQSSRHIEALEIFRE--AQKE 461
Query: 243 GVSV 246
G+ V
Sbjct: 462 GIKV 465
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 121/232 (52%), Gaps = 19/232 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D +SWTT+I YA+ EA+ +F+E +K + + + + ++L ACS + +
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQK-EGIKVDPMMIGSILEACSGLETILL 485
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y + R L + +V N +I++Y +CG+V ++++F + KD+++W+++I+ A
Sbjct: 486 AKQLHCY-AIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYA 543
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTV 173
+G +AL LF+ M V PD V ++++ A GGL G ++ +
Sbjct: 544 NSGLLNEALVLFAEMQSTDVQPDSVALVSILGAI--GGLSSLAKGKEVHGFLIRRNFHME 601
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
IV + +VDMY G L A + + + +W A++NA +H
Sbjct: 602 EAIV------SSLVDMYSGCGSLSGALKVFNAVKCK-DMVLWTAMINATGMH 646
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 9/224 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISAL 58
M R V SW +IG Y G EA+ V++ M + + P+ TL +VL A
Sbjct: 121 MSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDG 180
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVIS 117
G VH ++ ++ L S V NA+I MY KCG + A++VF ++ +D+ SW+++IS
Sbjct: 181 RCGCEVHG-LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMIS 239
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA-MSTVYEI 176
G NG QAL LF M + + T + ++ C+ ++ G L A + + E+
Sbjct: 240 GCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEV 299
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
Q ++ MY + G ++ A RE+ E ++ W ++L+
Sbjct: 300 NIQCN---ALLVMYTKCGRVDSALRVFREID-EKDYISWNSMLS 339
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 103/194 (53%), Gaps = 8/194 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D +SW +M+ Y + G EA+ EM + +P+ A +V++ SA + L G+
Sbjct: 328 EKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGG-FQPDHACIVSLSSAVGHLGWLLNGK 386
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+Y + + L VGN +++MY+KC + + VF+ + KD ISW+T+I+ A +
Sbjct: 387 EVHAY-AIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQS 445
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACS--HGGLVDQGLILFKAMSTVYEIVPQT 180
+AL++F G+ D + +++ ACS L+ + L + + + ++V +
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKN 505
Query: 181 QHYACVVDMYGRAG 194
+ ++D+YG G
Sbjct: 506 R----IIDIYGECG 515
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAY 106
VL ++ A++ G VH++ L + + ++ MY KCG V A +F+ ++
Sbjct: 64 VLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSS 123
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSHGGLVDQG 163
+ + SW+ +I +G +AL ++ M + +GV PD T +++ A G G
Sbjct: 124 RTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCG 183
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++ + + T ++ MY + G+L+ A M + + W ++++ C
Sbjct: 184 CEV-HGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSWTTMI GYA G +A+ +F+EM+ EP+E ++++VL AC+ + AL
Sbjct: 198 MPCRTIVSWTTMINGYARGGCYADALGIFREMQVVG-IEPDEISVISVLPACAQLGALEV 256
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y S + + V NA++ MY KCG + A +FN + KD+ISWST+I GLA
Sbjct: 257 GKWIHKY-SEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLA 315
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+++F M GV P+ VTF+ ++SAC+H GL ++GL F M Y + PQ
Sbjct: 316 NHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQI 375
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+G +E+A I +MP++ + W +LL++CRIH N E+ ++L+
Sbjct: 376 EHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLK 435
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N +A D+WE + +R IR +KK GCS IEVN
Sbjct: 436 LEPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVN 484
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 41/304 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V S+ +I Y A++VF +M TK A P++ T V+ +C+ + GQ V
Sbjct: 69 NVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQV 128
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---------------- 108
H+++ ++ + NA+I+MY KCGD+ A QV+ + +D
Sbjct: 129 HAHV-CKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQ 187
Query: 109 ---------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
++SW+T+I+G A GC AL +F M + G+ PD+++ I+++ A
Sbjct: 188 MKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPA 247
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+ G ++ G + K S + + +V+MY + G ++EA +M IE +
Sbjct: 248 CAQLGALEVGKWIHK-YSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQM-IEKDVI 305
Query: 214 VW----GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR 269
W G L N + + +F+ +++ V GV TF + + A A W + +
Sbjct: 306 SWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGV---TFVGVLSACAHAGLWNEGLRYF 362
Query: 270 DEIR 273
D +R
Sbjct: 363 DVMR 366
>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 186/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW MI GY G EEA+ + M + + +P+ ATL+ +L+ACS+++ L
Sbjct: 220 IPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFR-EGVKPDHATLIAILTACSALALLRQ 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ ++T+ L S NA++ MY KCG+VG + VF L +D++SW+T+I+ A
Sbjct: 279 GRSTHA-VATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ++A+ LF M G+ P+D+T ++++SAC H G V+ L LF MS+ Y I P
Sbjct: 338 QHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSA 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ GRAG LE+A ++I++MP EAE +VWGALL A + H N ++ + + LV
Sbjct: 398 EHYACVVDILGRAGQLEKACSYIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQ 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
VS G + ++SN +A A W + N++R +++ G+KK+ G SW E+
Sbjct: 458 SDSVSSGPYVMLSNIYAAAGMWGEVNRVRGQMKEKGVKKQPGYSWTEI 505
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 36/312 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVS+TTM+ G A RG A VF M + N++S + I+
Sbjct: 127 MPQRNVVSYTTMVDGLARRGEVARAREVFDAMPER-----------NLVSWAAMITGYVE 175
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ N+V A+I Y K GDV A ++F+ + KD+ISW+ +I+G
Sbjct: 176 NAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGY 235
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG G +A++L +M GV PD T IA+++ACS L+ QG A++T +
Sbjct: 236 VHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTH-AVATKTMLESS 294
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL- 238
T ++ MY + G + E+E + I+ + W ++ A H + + E+
Sbjct: 295 TSFCNALMTMYSKCGNVGESELVFMNLKIQ-DIVSWNTIIAAYAQHGKYQKAIALFHEME 353
Query: 239 --------------------VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
V + S+ F LMS+ +A + E + D + R G
Sbjct: 354 TRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQL 413
Query: 279 KKTGCSWIEVNP 290
+K CS+I+ P
Sbjct: 414 EK-ACSYIKKMP 424
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 25/222 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGF-CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP+RDVVSW ++ G A +F +M N + +V++ C + L
Sbjct: 33 MPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSR-----NVISWNSVVAGCLAHGDLD 87
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+Y + +V++ NA++ V+ G + A +F + ++++S++T++ GL
Sbjct: 88 AAS---AYFARAPRRNVASW--NAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGL 142
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A G +A ++F M + V++ A+I+ + D+ LF+AM P
Sbjct: 143 ARRGEVARAREVFDAMPERNL----VSWAAMITGYVENAMFDEARKLFEAM-------PD 191
Query: 180 TQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
AC ++ Y + G +E A +P++ S W A++
Sbjct: 192 KNVVACTAMITGYCKDGDVESARRLFDGIPVKDVIS-WNAMI 232
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWT +IG YA+ EEA+ VF+ M+ + EP+ L++VLSAC + +
Sbjct: 168 MPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ-VEGIEPDGVALLSVLSACGDLGVVDL 226
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + NA+I+MYVKCG V A++VF + K +++W+T+I+G A
Sbjct: 227 GEWVHRFV-LRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFA 285
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A++LF M V P+D+TF+A++S CSH GL D G FK M + Y+I P+
Sbjct: 286 LHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRV 345
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA I++MP +A ++WGALL A R H + E+ + L+
Sbjct: 346 EHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIE 405
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A +RW+ ++R +R GL+ G S I+V+
Sbjct: 406 LEPHNSGNYILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVD 454
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 38 AEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
A+P+ A+LV +C S+++ + V + D+ + N +I+ YVK GD+
Sbjct: 108 ADPHASASLVQAYCSCGSVAS---ARRVFDETAASADV----VSWNVMIDGYVKSGDLAR 160
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A ++F+++ ++++SW+ VI A +A+++F M + G+ PD V ++++SAC
Sbjct: 161 ARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGD 220
Query: 157 GGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
G+VD G + F + + +P ++DMY + G +++A
Sbjct: 221 LGVVDLGEWVHRFVLRRGLCQEIPLMN---AIIDMYVKCGSVKKA 262
>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Glycine max]
Length = 705
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 181/294 (61%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK VVSW MI GY G EA+ +F EM K+ E + T +VL+ACS ++AL
Sbjct: 369 IPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSY-VESDAITFTSVLTACSQLAALEK 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + L + +V A+++MY KCG V A VF L +D++SW+++I+
Sbjct: 428 GKEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYG 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL+LF+ M+ + V PD V F+A++SAC H GLVD+G F M VY I+P+
Sbjct: 487 SHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRV 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++D+ GRAG L EA +++ P I + + L +ACR+HRN ++ I + L+
Sbjct: 547 EHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLI 606
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+K T+ L+SN +A A +W++ +R +++ +GLKK GCSWIE+N I
Sbjct: 607 DKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKIL 660
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 134/272 (49%), Gaps = 8/272 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DV W T+I Y + G ++A+ F M + EPN T+ +S+C+ + L+
Sbjct: 167 MPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFG-FEPNSVTITTAISSCARLLDLNR 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + L + + + +A+++MY KCG + +AI++F + K +++W+++ISG
Sbjct: 226 GMEIHEELINSGFL-LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYG 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G +QLF M GV P T +LI CS + +G + + I P
Sbjct: 285 LKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFV-HGYTIRNRIQPDV 343
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQ 236
+ ++D+Y + G +E AE + +P +++ W +++ ++ +F +R+
Sbjct: 344 FVNSSLMDLYFKCGKVELAEKIFKLIP-KSKVVSWNVMISGYVAEGKLFEALGLFSEMRK 402
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
V ++ + + A ++ ++ + +
Sbjct: 403 SYVESDAITFTSVLTACSQLAALEKGKEIHNL 434
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 24/214 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W ++ GY + EA+ +F+++ +P+ T +V AC + G+ +
Sbjct: 69 EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + + L + +VG++++ MY KC AI +FN + KD+ W+TVIS +G
Sbjct: 129 HTCL-IKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTV 173
+ AL+ F LM G P+ VT IS+C+ H L++ G +L +S+
Sbjct: 188 FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA 247
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+VDMYG+ G LE A +MP
Sbjct: 248 ------------LVDMYGKCGHLEMAIEIFEQMP 269
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFN 102
L+ +L AC + +L G+ +H + T L + N + +IN Y+ C A VF+
Sbjct: 6 LLPLLRACMNSKSLKQGKLIHQKVVT---LGLQNDIFLCKTLINQYLSCHLYDHAKCVFD 62
Query: 103 MLAYKDMIS-WSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFIALISACS----- 155
+ IS W+ +++G N +AL+LF L+ + PD T+ ++ AC
Sbjct: 63 NMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRY 122
Query: 156 ------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
H L+ GL++ +IV + +V MYG+ E+A EMP E
Sbjct: 123 VLGKMIHTCLIKTGLMM--------DIVVGSS----LVGMYGKCNAFEKAIWLFNEMP-E 169
Query: 210 AEWSVWGALLN 220
+ + W +++
Sbjct: 170 KDVACWNTVIS 180
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/290 (41%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A+ G EEA +F +M K E + A +V++L+AC+ +L+
Sbjct: 307 MPTKNLVTWTIMVSACAQNGLVEEAGRLFTQM-KEAAVELDVAAVVSILAACAESGSLAL 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H Y+ TR L S V NA+I+M+ KCG V A VF+ +A KD +SW+T+I G
Sbjct: 366 GKRIHRYVRTR-QLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGF 424
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL F+ M + G PD VT I ++SAC+H G V++G F M Y IVPQ
Sbjct: 425 AMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQ 484
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR GL+EEA I+ MP + +WG+LL+ACR+H+N E + EL
Sbjct: 485 IEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELS 544
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +A++SN +A A +W D K R +++ G +K G SWIE++
Sbjct: 545 KLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIELD 594
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 43/233 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW T++ GY + G E+A +FQ M + NV+S
Sbjct: 245 MPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPER-----------NVVS---------- 283
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V++ Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 284 --------------------WSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACA 323
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A +LF+ M V D +++++AC+ G + G + + + T ++ T
Sbjct: 324 QNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRT-RQLGRST 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DM+ + G + A+ E + W ++ +H D+ D
Sbjct: 383 HVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALD 435
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 17/221 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ T++ YA AVS+F M + + T ++ A SS S L+
Sbjct: 119 PQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR-----DSFTYSFLIKALSS-SGLTPL 172
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VHS++ + VGNA+I+ Y K G A +VF + +D +SW++ ++ +
Sbjct: 173 RAVHSHVVKLGSIE-DTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVR 231
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G A ++F M D V++ ++ + G ++ LF+ M +
Sbjct: 232 QGEVASARRMFDEMPDK----DTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVS---- 283
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ VV Y + G +E A +MP + W +++AC
Sbjct: 284 -WSTVVSGYCKKGDIEMARVIFDKMPTK-NLVTWTIMVSAC 322
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 115/286 (40%), Positives = 181/286 (63%), Gaps = 2/286 (0%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V+W +I Y + G +EA+S F +M + + PN T V+VL A + ++A G H+
Sbjct: 243 VTWNVIIAAYMQNGHAKEAISSFHQM-RLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA 301
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I LS + LVGN++I+MY KCG + + ++FN + +KD +SW+ ++SG A++G G
Sbjct: 302 CIIQMGFLS-NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGD 360
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
+A+ LFSLM + V D V+F++++SAC H GLV++G +F +MS Y I P +HYAC+
Sbjct: 361 RAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 420
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
VD+ GRAGL +E FI+ MP+E + VWGALL +CR+H N ++ + LV + +
Sbjct: 421 VDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNP 480
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
F ++S+ +A + RW DA K R ++ +GLKK GCSW+E+ +
Sbjct: 481 AHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKV 526
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 37/254 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P + W +MI Y EA+ ++ M + E + ++ S + L
Sbjct: 110 PNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRA 169
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ V + R + NA+I + D +A +VF+ + +D +SW T+++G A
Sbjct: 170 REVFDKMPKR-----DVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAH 224
Query: 122 NGCGRQALQLFSLMIINGV------------------------------FPDDVTFIALI 151
NGC + L+LF M + V P+ VTF++++
Sbjct: 225 NGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 284
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
A ++ +G+ F A + T ++DMY + G L+ +E EM +
Sbjct: 285 PAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDT 343
Query: 212 WSVWGALLNACRIH 225
S W A+L+ +H
Sbjct: 344 VS-WNAMLSGYAVH 356
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW M+ GYA G + A+++F M+++ + + + + V+VLSAC +
Sbjct: 338 MDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQES-QVQIDSVSFVSVLSACRHAGLVEE 396
Query: 61 GQYVHSYISTRYDL 74
G+ + +S +Y +
Sbjct: 397 GRKIFHSMSDKYHI 410
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 181/288 (62%), Gaps = 3/288 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ + SW MI GY + G + A+S+FQEM + PN T+ ++LSAC+ + ALS G
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEM--MPQLSPNPVTVTSILSACAQLGALSIG 434
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH I + L + V A+++MY KCG + A Q+F+++ K++++W+ +I+G +
Sbjct: 435 KWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGL 493
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL+LF M+ +G+ P VTF++++ ACSH GLV +G +F +M+ Y P ++
Sbjct: 494 HGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSE 553
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAG L A FI MP+E +VWGALL AC IH+N EM + + L
Sbjct: 554 HYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQL 613
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+VG + L+SN ++ + A +R +++ L K GC+ IE++
Sbjct: 614 DPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++S+ MI GY E AV++F+E+ + + N +TLV ++ + L + +
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLI 337
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ +S + + + V A+ +Y + +V A Q+F+ K + SW+ +ISG NG
Sbjct: 338 QN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAM-STVYEIVP 178
+A+ LF M+ + P+ VT +++SAC+ G + GLI + + S VY
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYV--- 452
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G + EA ++ ++ W A++ +H
Sbjct: 453 ----STALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V W TMI G++ + E+++ VF +M + + TL VL+A + +
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVAELQEYRL 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++++ L V +I++Y KCG +F+ + D+IS++ +ISG
Sbjct: 233 GMGIQC-LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYT 291
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALIS---ACSHGGLVDQGLILFKAMSTVYEIV 177
N A+ LF ++ +G + T + LI +H L L + +S I+
Sbjct: 292 FNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR----LIQNLSLKIGII 347
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
Q + +Y R ++ A E P E + W A+++
Sbjct: 348 LQPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMIS 389
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+ + +I G+++ G + ++ ++ + K P+ T +SA S + G
Sbjct: 74 KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGV 133
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H++ + D SNL VG+A++++Y K +A +VF+++ +D + W+T+ISG +
Sbjct: 134 LLHAH--SIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
N ++++F M+ G+ D T +++A +
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 71 RYDLS-VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
YDLS ++ L + + G V Q+FN ++ D+ ++ +I G + NG + ++
Sbjct: 43 HYDLSSITKLT-----HKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSI 97
Query: 130 QLFS-LMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVV 187
L++ L + PD+ T+ ISA S L D+ + +L A S V + + +V
Sbjct: 98 FLYTHLRKXTNLRPDNFTYAFAISAASR--LEDERVGVLLHAHSIVDGVASNLFVGSAIV 155
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
D+Y + E A MP E + +W +++ RN D IR
Sbjct: 156 DLYFKFTRAELARKVFDVMP-ERDTVLWNTMISG--FSRNSYFEDSIR 200
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VV+W MI GY G +EA+ +F EM ++ P T +++L ACS +S
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG-IPPTGVTFLSILYACSHSGLVSE 534
Query: 61 GQYVHSYISTRY 72
G + ++ Y
Sbjct: 535 GNEIFHSMANNY 546
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 181/288 (62%), Gaps = 3/288 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ + SW MI GY + G + A+S+FQEM + PN T+ ++LSAC+ + ALS G
Sbjct: 377 PEKSLASWNAMISGYTQNGLTDRAISLFQEM--MPQLSPNPVTVTSILSACAQLGALSIG 434
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH I + L + V A+++MY KCG + A Q+F+++ K++++W+ +I+G +
Sbjct: 435 KWVHGLIKSE-RLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGL 493
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL+LF M+ +G+ P VTF++++ ACSH GLV +G +F +M+ Y P ++
Sbjct: 494 HGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSE 553
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAG L A FI MP+E +VWGALL AC IH+N EM + + L
Sbjct: 554 HYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQL 613
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+VG + L+SN ++ + A +R +++ L K GC+ IE++
Sbjct: 614 DPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEID 661
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++S+ MI GY E AV++F+E+ + + N +TLV ++ + L + +
Sbjct: 279 DLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLI 337
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ +S + + + V A+ +Y + +V A Q+F+ K + SW+ +ISG NG
Sbjct: 338 QN-LSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGL 396
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAM-STVYEIVP 178
+A+ LF M+ + P+ VT +++SAC+ G + GLI + + S VY
Sbjct: 397 TDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYV--- 452
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G + EA ++ ++ W A++ +H
Sbjct: 453 ----STALVDMYAKCGSIVEARQLF-DLMVDKNVVTWNAMITGYGLH 494
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V W TMI G++ + E+++ VF +M + + TL VL+A + +
Sbjct: 174 MPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSF-DSTTLATVLTAVAELQEYRL 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++++ L V +I++Y KCG +F+ + D+IS++ +ISG
Sbjct: 233 GMGIQC-LASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYT 291
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALIS---ACSHGGLVDQGLILFKAMSTVYEIV 177
N A+ LF ++ +G + T + LI +H L L + +S I+
Sbjct: 292 FNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSR----LIQNLSLKIGII 347
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
Q + +Y R ++ A E P E + W A+++
Sbjct: 348 LQPSVSTALTTVYCRLNEVQFARQLFDESP-EKSLASWNAMIS 389
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+ + +I G+++ G + ++ ++ + K P+ T +SA S + G
Sbjct: 74 KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGV 133
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H++ + D SNL VG+A++++Y K +A +VF+++ +D + W+T+ISG +
Sbjct: 134 LLHAH--SIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSR 191
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
N ++++F M+ G+ D T +++A +
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLS-VSNLVGNAVINMYVKCGDVGIAIQVFN 102
TL+N + S + + +H YDLS ++ L + + G V Q+FN
Sbjct: 19 TLLNNATTLSQLLQIQAQLILHG---IHYDLSSITKLT-----HKFFDLGAVAHVRQLFN 70
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFPDDVTFIALISACSHGGLVD 161
++ D+ ++ +I G + NG + ++ L++ L + PD+ T+ ISA S L D
Sbjct: 71 KVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR--LED 128
Query: 162 QGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ + +L A S V + + +VD+Y + E A MP E + +W +++
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMP-ERDTVLWNTMIS 187
Query: 221 ACRIHRNDEMFDPIR 235
RN D IR
Sbjct: 188 G--FSRNSYFEDSIR 200
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VV+W MI GY G +EA+ +F EM ++ P T +++L ACS +S
Sbjct: 476 MVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSG-IPPTGVTFLSILYACSHSGLVSE 534
Query: 61 GQYVHSYISTRY 72
G + ++ Y
Sbjct: 535 GNEIFHSMANNY 546
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 179/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV W+ +I GYA G +EA+ VF EM++ + P+ +V V SACS + AL
Sbjct: 264 MVEKDVVCWSALIQGYASNGMPKEALDVFFEMQR-ENVRPDCYAMVGVFSACSRLGALEL 322
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + + LS + ++G A+I+ Y KCG V A +VF + KD + ++ VISGLA
Sbjct: 323 GNWARGLMDGDEFLS-NPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLA 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G A +F M+ G+ PD TF+ L+ C+H GLVD G F MS+V+ + P
Sbjct: 382 MCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTI 441
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGLL EA+ IR MP+EA VWGALL CR+H++ ++ + + ++L+
Sbjct: 442 EHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIE 501
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN ++ + RW++A KIR + + G++K GCSW+EV+
Sbjct: 502 LEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVD 550
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 5/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++VVSWT +I GY E G EA+ +F+ + + P+ TLV +L ACS + L+
Sbjct: 163 IPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMG-LRPDSFTLVRILYACSRVGDLAS 221
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++ Y+ R SV N+ V ++++MY KCG + A +VF+ + KD++ WS +I G
Sbjct: 222 GRWIDGYM--RESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGY 279
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG ++AL +F M V PD + + SACS G ++ G + + E +
Sbjct: 280 ASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELG-NWARGLMDGDEFLSN 338
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREM 206
++D Y + G + +A+ + M
Sbjct: 339 PVLGTALIDFYAKCGSVAQAKEVFKGM 365
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSF 60
P ++ + T+I G +AVSV+ M + A P+ T VL AC+ +
Sbjct: 62 PHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFA-PDNFTFPFVLKACTRLPHYFHV 120
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +HS I T +D V V ++ +Y K G + A +VF+ + K+++SW+ +I G
Sbjct: 121 GLSLHSLVIKTGFDWDV--FVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGY 178
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEI 176
+GC +AL LF ++ G+ PD T + ++ ACS G + G + + +V +
Sbjct: 179 IESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNV 238
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
T +VDMY + G +EEA M +E + W AL+
Sbjct: 239 FVATS----LVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQG 278
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
A VF + ++ ++T+I G+ N R A+ +++ M +G PD+ TF ++ AC+
Sbjct: 54 ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTR 113
Query: 156 -----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
H GL L++ +++ +T +V +Y + G L +A E+P E
Sbjct: 114 LPHYFHVGLSLHSLVIKTGFD--WDVFVKTG----LVCLYSKNGFLTDARKVFDEIP-EK 166
Query: 211 EWSVWGALL 219
W A++
Sbjct: 167 NVVSWTAII 175
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 195/295 (66%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ VV+W +MI GY + GF +EAV +F M+ +P+ +T V++LSAC+ + A+
Sbjct: 179 MPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLG-VKPDSSTFVSLLSACAQVGAIGL 237
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +VH YI+ +DL+V ++G A++NMY +CG+V A +VF+ + K++++W+ +ISG
Sbjct: 238 GFWVHEYIARNCFDLNV--VLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGY 295
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G QA++LF+ M +G P++VTF+A++SAC+H GLVD+G +F M Y +VP
Sbjct: 296 GMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPS 355
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+H C+VDM GRAG L EA FI+ P E +VW A+L AC++H+N ++ + + L
Sbjct: 356 VEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHL 415
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
++ + + G + ++SN +A A R + KIR+ + R LKK+ G S I+V+ ++
Sbjct: 416 LSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVY 470
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK D + ++I ++ F +E++ ++ M + N T V+ + + ++A S
Sbjct: 78 IPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSN-YTFSAVIKSSADLTAFSI 136
Query: 61 GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H ++ Y L V A+++ Y K G V IA +VF+ + K +++W+++ISG
Sbjct: 137 GETIHCHVYICGYGLDA--YVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGY 194
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEI 176
NG G++A++LF LM GV PD TF++L+SAC+ G + G + + ++ +
Sbjct: 195 EQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNV 254
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V T +++MY R G + +A M E W A+++ +H
Sbjct: 255 VLGT----ALMNMYSRCGNVSKAREVFDSME-EKNIVAWTAMISGYGMH 298
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 175/289 (60%), Gaps = 5/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSWT +I Y + G E A+ +F +M + +PN+ T+ ++LSAC ++ A+
Sbjct: 647 MPKRDVVSWTAIISAYVQAGHGEVALDLFLDM-LARGIKPNQLTVTSLLSACGNLGAIKL 705
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ H+ I + VGN++I MY KCG + G VF + D+I+W+ V+ G
Sbjct: 706 GEQFHALI-FKLGFDTFLFVGNSLITMYFKCGYEDGFC--VFEEMPEHDLITWNAVLVGC 762
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G++A+++F M + G+ PD ++F+ ++ ACSH GLVD+G F +M+ Y I+P
Sbjct: 763 AQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPL 822
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C+VD+ GRAG L EAEA I MP++ + +W ALL ACRIHRN E+ + + L
Sbjct: 823 VYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLF 882
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
T+ L+SN FA W+ +IR ++ GL K+ G SWI+V
Sbjct: 883 QMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQV 931
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 121/257 (47%), Gaps = 44/257 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ SW MI G+ + EA+ + E+ ++ P++++ + LSAC++I +
Sbjct: 515 MPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV-PSDSSFTSALSACANIGDVEI 573
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS ++ + ++ V N +I+MY KCG+V VF + KD +SW+++ISGL+
Sbjct: 574 GRVIHS-LAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLS 632
Query: 121 MN-------------------------------GCGRQALQLFSLMIINGVFPDDVTFIA 149
N G G AL LF M+ G+ P+ +T +
Sbjct: 633 ENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTS 692
Query: 150 LISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
L+SAC + G + G ++FK + V + ++ MY + G E+ E
Sbjct: 693 LLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNS-----LITMYFKCG-YEDGFCVFEE 746
Query: 206 MPIEAEWSVWGALLNAC 222
MP E + W A+L C
Sbjct: 747 MP-EHDLITWNAVLVGC 762
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 18/222 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW MI GY EA VF +M +T A P+++ V VLSA + + L
Sbjct: 321 MPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTV-ARPDQSIFVVVLSAITGLDDLEL 379
Query: 61 -GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G I T Y+ V +VG+A++N Y + G + +A+ F + ++ SW+T+I+
Sbjct: 380 IGSLRPIAIKTGYEGDV--VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAF 437
Query: 120 AMNGCGR--QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A CGR A+QL+ + V T A+++A + G + + ++F + +
Sbjct: 438 AQ--CGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRIQKARLIFDEI-----LN 486
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
P + ++ Y + G+L+EA+ ++MP++ S W A++
Sbjct: 487 PNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMI 527
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 111/223 (49%), Gaps = 16/223 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ SWTTMI +A+ G ++A+ +++ + E AT +++A + + +
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERV-----PEQTVATKTAMMTAYAQVGRIQK 476
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + I L+ + + NA+I Y + G + A +F + K+ SW+ +I+G
Sbjct: 477 ARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFV 531
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N R+AL+L + +G P D +F + +SAC++ G V+ G ++ S + Q
Sbjct: 532 QNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIH---SLAIKTGCQF 588
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Y ++ MY + G +E+ R + ++ S W +L++
Sbjct: 589 NSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLISG 630
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 68/314 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +MI GY++ G +EA +F N T +L+ + +
Sbjct: 197 MIQRDVVSWNSMINGYSQNGKVDEARLLFDAF-----VGKNIRTWTILLTGYAKEGRIEE 251
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ V ++ R N+V NA+I+ YV+ GD+ A ++F+ + K++ SW++V++G
Sbjct: 252 AREVFESMTER------NVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGY 305
Query: 120 AMNGCGRQALQLFSLM----------IING------------VF---------PDDVTFI 148
+A +LF M +I+G VF PD F+
Sbjct: 306 CHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV 365
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEAEAF 202
++SA + GL D LI ++ I +T + VV + Y R G L+ A F
Sbjct: 366 VVLSAIT--GLDDLELI-----GSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418
Query: 203 IREMPIEAEWSVWGALLNA---C-RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
MP E+S W ++ A C R+ ++++ + ++ +V T M +A
Sbjct: 419 FETMPERNEYS-WTTMIAAFAQCGRLDDAIQLYERVPEQ-------TVATKTAMMTAYAQ 470
Query: 259 ADRWEDANKIRDEI 272
R + A I DEI
Sbjct: 471 VGRIQKARLIFDEI 484
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 18/185 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I + G V A +VFN + +D++SW+++I+G + NG +A LF + +
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNI- 233
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
T+ L++ + G +++ +F++M T +V + ++ Y + G L+ A
Sbjct: 234 ---RTWTILLTGYAKEGRIEEAREVFESM-TERNVVS----WNAMISGYVQNGDLKNARK 285
Query: 202 FIREMPIE--AEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
EMP + A W SV + R+ E+FD + + SV ++S
Sbjct: 286 LFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPER------NSVSWMVMISGYVHI 339
Query: 259 ADRWE 263
+D WE
Sbjct: 340 SDYWE 344
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 180/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +V+WT M+ GY G AV F+ M+ T+ EP++ ++V VL AC+ + AL
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGALEL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y R+ + S + NA++ MY KCG + A+Q+F+ +A KD+ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A+ LF+ M G V P+ +TF+ L+SACS+ GLVD+GL F M+ VY + P
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVD+ GR+G + A +R+MP+ A+ VWG+LL+ACR H + + + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ VG +++N +A A RW D R IR ++K GCS IEV
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 42/287 (14%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPN------EATLVNVLSACSSISALSFGQYVH 65
MI YA+ +AV+V+ M + + P+ T +L AC +AL G+ VH
Sbjct: 83 MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVH 142
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+++ R S +V N++I MY + GD+ +A +VF+ + +D++SW+ +IS A G
Sbjct: 143 THV-VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 126 RQALQLFSLMI-------------------------------INGVFPDDVTFIALISAC 154
R+A LF+ M G PDDV+ +A++ AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EW 212
+ G ++ G ++ A + ++ T +++MY + G +++A M + W
Sbjct: 262 AQLGALELGRWIY-AYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320
Query: 213 S-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
S V G L R H +F + +E + V L + ++AG
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAG 367
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 120/282 (42%), Positives = 178/282 (63%), Gaps = 2/282 (0%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
SWT+MI GY + G +EA+ +F +ME+ + NE T+V VL+AC+ + AL G +H Y
Sbjct: 194 SWTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEY 252
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
S R+ + + N +I+MYVKCG + A +VF + + ++SWS +I GLAM+G +
Sbjct: 253 -SNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEE 311
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
AL+LFS M G+ P+ VTFI L+ ACSH GL+ +G F +M+ Y I+PQ +HY C+V
Sbjct: 312 ALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMV 371
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247
D+ RAGLL EA FI MP++ VWGALL ACR+H+N EM + + L+ ++ G
Sbjct: 372 DLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDG 431
Query: 248 TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ ++SN +A A RWED ++R ++ +KK G S I V+
Sbjct: 432 YYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVD 473
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW+ MIGG A G EEA+ +F +M + EPN T + +L ACS + +S
Sbjct: 288 MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG-IEPNGVTFIGLLHACSHMGLISE 346
Query: 61 GQYVHSYISTRY 72
G+ + ++ Y
Sbjct: 347 GRRFFASMTRDY 358
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK D V+WT MIGGYA G AV +F++M+ P++ T+V+VLSAC+ + AL
Sbjct: 171 MPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVC-PDDVTMVSVLSACTDLGALEL 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ SYI L L NA+++M+ KCGDV A+ +F ++ + ++SW++VI GLA
Sbjct: 230 GKWIESYIEKERVLKTVEL-SNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLA 288
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ LF M +G+ P+D+ FI L+SACSH GLV++G F M+ + IVP+
Sbjct: 289 MHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKI 348
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGL+ EA F+ MPIE +W L++ACR+H ++ + I ++L+
Sbjct: 349 EHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIR 408
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN + WE +KIR + + G++K G + IE++ I
Sbjct: 409 NEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEI 460
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 101/206 (49%), Gaps = 9/206 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D ++T+I YAE + + + PN+ VL AC+ + L+ G+ V
Sbjct: 72 DAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAV 131
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKC-GDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H + ++ V N +++MY C G + A ++F+ + D ++W+ +I G A G
Sbjct: 132 HGSL-VKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLG 190
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQT 180
A+ LF M I GV PDDVT ++++SAC+ G ++ G K + + E ++
Sbjct: 191 QSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG----KWIESYIEKERVLKTV 246
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
+ +VDM+ + G +++A R M
Sbjct: 247 ELSNALVDMFAKCGDVDKALGLFRNM 272
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD V W MI GY + G EA+ +F+ M K K A+PNE T+++VLSAC + AL
Sbjct: 216 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALES 274
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI + + VG A+++MY KCG + A VF+ + KD+++W+++I G A
Sbjct: 275 GRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 333
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++ALQLF M G+ P ++TFI ++SAC H G V +G +F M Y I P+
Sbjct: 334 MHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKI 393
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V++ GRAG +E+A ++ M IE + +WG LL ACR+H + + I + LV+
Sbjct: 394 EHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 453
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A W+ ++R ++ G+KK+ GCS IEVN +
Sbjct: 454 QNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 505
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 133/302 (44%), Gaps = 44/302 (14%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V WT +I G+A RG E+A++ + +M T+ EPN T ++L C + G+ +H
Sbjct: 93 VFFWTAIIHGHALRGLHEQALNFYAQM-LTQGVEPNAFTFSSILKLC----PIEPGKALH 147
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------------- 111
S + + V ++++Y + GDV A Q+F+ + K ++S
Sbjct: 148 SQ-AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGEL 206
Query: 112 -----------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
W+ +I G NG +AL LF M+ P++VT ++++SAC
Sbjct: 207 DAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 266
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
G ++ G + + I +VDMY + G LE+A ++ + +
Sbjct: 267 GQLGALESGRWVHSYIEN-NGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID-DKDVVA 324
Query: 215 WGALLNACRIH----RNDEMFDPIRQELVNKKGVS-VGTFALMSNTFAGADRWEDANKIR 269
W +++ +H ++F + + ++ ++ +G + ++ + W+ NK++
Sbjct: 325 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 384
Query: 270 DE 271
DE
Sbjct: 385 DE 386
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
R+ L ++ + Y G + ++ +F + W+ +I G A+ G QAL
Sbjct: 55 RHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN 114
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVD 188
++ M+ GV P+ TF +++ C ++ G L S ++ + Y ++D
Sbjct: 115 FYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALH---SQAVKLGFDSDLYVRTGLLD 167
Query: 189 MYGRAGLLEEAEAFIREMP 207
+Y R G + A+ MP
Sbjct: 168 VYARGGDVVSAQQLFDTMP 186
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 184/295 (62%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW+TMI G++ G E+ S F+E+ + E PNE +L VLSACS A F
Sbjct: 396 MPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRA-EMRPNEVSLTGVLSACSQSGAFEF 454
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISG 118
G+ +H ++ + Y VS V NA+I+MY +CG+V +A VF M + ++SW+++I+G
Sbjct: 455 GKTLHGFVEKSGYSWIVS--VNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAG 512
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAM+G G +A+++F+ M +GV PD+++FI+L+ ACSH GL+ +G F M VY I P
Sbjct: 513 LAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEP 572
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY C+VD+YGR+G L++A +FI +MPI VW LL AC H N E+ + ++Q L
Sbjct: 573 AVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 632
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D IR + +KK T S +EV +++
Sbjct: 633 NELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMY 687
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+IG Y E G A VF EM +PN V++AC + +S + + +
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEM-----PQPNLVAWNAVVTACFRGNDVSGAREIFDKML 366
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R S N ++ Y+K G++ A ++F+ + ++D +SWST+I G + NG ++
Sbjct: 367 VRNHTS-----WNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESF 421
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHYACVV 187
F ++ + P++V+ ++SACS G + G L F S IV ++
Sbjct: 422 SYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNN---ALI 478
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
DMY R G + A M + W +++ +H + E
Sbjct: 479 DMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGE 520
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 29/224 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+ D + T++ GY+E +V+VF EM + P+ + V+ A ++ +L
Sbjct: 232 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRT 291
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + ++ L V +I MY +CG VG A +VF+ + ++++W+ V++
Sbjct: 292 GFQMHCQ-ALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACF 350
Query: 121 MNGCGRQALQLFSLMIING----------------------VFP-----DDVTFIALISA 153
A ++F M++ +F DDV++ +I
Sbjct: 351 RGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVG 410
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197
SH G ++ F+ + E+ P V+ ++G E
Sbjct: 411 FSHNGSFNESFSYFRELLRA-EMRPNEVSLTGVLSACSQSGAFE 453
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+WT MIGGYAE G E++ +F++M + + P++ +V V+ AC+ + A+
Sbjct: 221 MQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACAKLGAMHK 279
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + YI R + ++G A+I+MY KCG V A ++F+ + K++ISWS +I+
Sbjct: 280 ARIIDDYIQ-RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 338
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL LF +M+ +G+ PD +T +L+ ACSH GLV++GL F +M Y +
Sbjct: 339 YHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDV 398
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG L+EA I+ M IE + +WGA L ACR H++ + + L+
Sbjct: 399 KHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 458
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RWED KIRD + + LKK G +WIEV+
Sbjct: 459 LQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVD 507
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 178/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+WT MIGGYAE G E++ +F +M + + P++ +V V+ AC+ + A+
Sbjct: 897 MXERDLVTWTVMIGGYAECGNANESLVLFDKM-REEGVVPDKVAMVTVVFACAKLGAMHK 955
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + YI R + ++G A+I+M+ KCG V A ++F+ + K++ISWS +I+
Sbjct: 956 ARTIDDYIQ-RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 1014
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL LF +M+ +G+ P+ +T ++L+ ACSH GLV++GL F M Y +
Sbjct: 1015 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDV 1074
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG L+EA I M E + +WGA L ACR H++ + + L+
Sbjct: 1075 KHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLE 1134
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RWED KIRD + + LKK G +WIEV+
Sbjct: 1135 LQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVD 1183
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW+ M+GG+A+ G F+E+ + A P+ TL V+ AC + L
Sbjct: 120 MCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQM 178
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I ++ L + + V A+++MYVKC ++ A +F+ + +D+++W+ +I G A
Sbjct: 179 GRLIH-HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYA 237
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIV 177
G ++L LF M GV PD V + ++ AC+ G + + I+ + +++
Sbjct: 238 ECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVI 297
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G +E A M E W A++ A H
Sbjct: 298 LGT----AMIDMYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 340
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 114/231 (49%), Gaps = 16/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW+ M+GG+A+ G F+E+ + A P+ TL V+ AC + L
Sbjct: 796 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQM 854
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I ++ L + + V A+++MY KC ++ A +F+ + +D+++W+ +I G A
Sbjct: 855 GRLIH-HIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYA 913
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++L LF M GV PD V + ++ AC+ G + + T+ + + +
Sbjct: 914 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA-------RTIDDYIQRK 966
Query: 181 QHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DM+ + G +E A M E W A++ A H
Sbjct: 967 KFQLDVILGTAMIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 1016
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 17/204 (8%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
+V N ++ Y + A +F+ + +D +SWS ++ G A G F +I
Sbjct: 771 IVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRC 830
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLL 196
G PD+ T +I AC + G ++ VY+ H+ C +VDMYG+ +
Sbjct: 831 GARPDNYTLPFVIRACRDLKNLQMGRLIH---HIVYKFGLDLDHFVCAALVDMYGKCREI 887
Query: 197 EEAEAFIREMPIEAEWSVW----GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM 252
E+A F+ + E + W G + + +FD +R+E GV A++
Sbjct: 888 EDAR-FLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREE-----GVVPDKVAMV 941
Query: 253 SNTFAGAD--RWEDANKIRDEIRR 274
+ FA A A I D I+R
Sbjct: 942 TVVFACAKLGAMHKARTIDDYIQR 965
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 110/260 (42%), Gaps = 26/260 (10%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
EE S F +++ N ++ L C +++ + + VH+ S + + + +V N
Sbjct: 48 EEESSKFHFLQRL-----NPKFYISALVNCRNLTQV---RQVHAQASV-HGMLENIVVAN 98
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
+I Y + A +F+ + +D +SWS ++ G A G F +I G P
Sbjct: 99 KLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARP 158
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAE 200
D+ T +I AC + G ++ VY+ H+ C +VDMY + +E+A
Sbjct: 159 DNYTLPFVIRACRDLKNLQMGRLIH---HIVYKFGLDLDHFVCAALVDMYVKCREIEDAR 215
Query: 201 AFIREMPIEAEWSVW----GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF 256
+M E + W G + + + +F+ +R+E GV A+++ F
Sbjct: 216 FLFDKMQ-ERDLVTWTVMIGGYAECGKANESLVLFEKMREE-----GVVPDKVAMVTVVF 269
Query: 257 AGAD--RWEDANKIRDEIRR 274
A A A I D I+R
Sbjct: 270 ACAKLGAMHKARIIDDYIQR 289
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD V W MI GY + G EA+ +F+ M K K A+PNE T+++VLSAC + AL
Sbjct: 150 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALES 208
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI + + VG A+++MY KCG + A VF+ + KD+++W+++I G A
Sbjct: 209 GRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 267
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++ALQLF M G+ P ++TFI ++SAC H G V +G +F M Y I P+
Sbjct: 268 MHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKI 327
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V++ GRAG +E+A ++ M IE + +WG LL ACR+H + + I + LV+
Sbjct: 328 EHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 387
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A W+ ++R ++ G+KK+ GCS IEVN +
Sbjct: 388 QNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 439
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ Y K G++ A +F+ + +D + W+ +I G NG +AL LF M+ P
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
++VT ++++SAC G ++ G + + I +VDMY + G LE+A
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIEN-NGIQFNVHVGTALVDMYSKCGSLEDARLV 247
Query: 203 IREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS-VGTFALMSNTFA 257
++ + + W +++ +H ++F + + ++ ++ +G + ++
Sbjct: 248 FDKID-DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGW 306
Query: 258 GADRWEDANKIRDE 271
+ W+ NK++DE
Sbjct: 307 VTEGWDIFNKMKDE 320
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SWT+++ Y++ ++A+ +F M + + PN+ T +VL +C+++ L +
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + L + + +A+++MY KCG +G A +VFN ++ D +SW+ +I+G A
Sbjct: 496 GQQVHGII-CKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ALQLF M+ GV P+ VTF+ ++ ACSHGGLV++GL FK M Y +VP+
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEM 614
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L +A FI MP+E VW LL ACR+H N E+ + Q++++
Sbjct: 615 EHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILS 674
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K + T+ L+SNT+ + ++D +R ++ G+KK+ GCSWI VN ++
Sbjct: 675 FKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTL 726
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI GY GF E+A+ +F +M + + + T +V +A +++ LS G+ VH+
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQN-DIYLDHYTYCSVFNAIAALKCLSLGKKVHAR- 400
Query: 69 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+ + L V+ + + NAV N Y KCG + +VFN + +D+ISW+++++ + +
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
A+++FS M G+ P+ TF +++ +C++ L++ G + + V + + A +V
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA-LV 519
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
DMY + G L +A+ + A+ W A++
Sbjct: 520 DMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ SWT +I G AE G + F EM+ ++ P++ +L C + ++
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGLDSIEL 189
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ I R + V A++NMY K ++ + +VFN + +++SW+ +I+G
Sbjct: 190 GNMVHAQIVIR-GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N A LF M+ GV PD TFI + A V++ + + + T
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV-SGYALELGVDSNT 307
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLN 220
++DM + G L+EA + I ++ W A+++
Sbjct: 308 LVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 3/176 (1%)
Query: 45 LVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
LV++L C L + VH ++ +++ S ++ N V + Y KC D+ A ++F+
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
++ ++ SW+ +I+GLA NG + F M G+FPD + ++ C ++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ A + T +++MY + +E++ M E W A++
Sbjct: 191 NMV-HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT-EVNVVSWNAMI 244
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 184/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SWT+++ Y++ ++A+ +F M + + PN+ T +VL +C+++ L +
Sbjct: 437 MEDRDLISWTSLVTAYSQCSEWDKAIEIFSNM-RAEGIAPNQFTFSSVLVSCANLCLLEY 495
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + L + + +A+++MY KCG +G A +VFN ++ D +SW+ +I+G A
Sbjct: 496 GQQVHGII-CKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ALQLF M+ GV P+ VTF+ ++ ACSHGGLV++GL FK M Y +VP+
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEM 614
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L +A FI MP+E VW LL ACR+H N E+ + Q++++
Sbjct: 615 EHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILS 674
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K + T+ L+SNT+ + ++D +R ++ G+KK+ GCSWI VN ++
Sbjct: 675 FKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTL 726
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI GY GF E+A+ +F +M + + + T +V +A +++ LS G+ VH+
Sbjct: 343 WNAMISGYLRSGFNEKALELFAKMCQN-DIYLDHYTYCSVFNAIAALKCLSLGKKVHAR- 400
Query: 69 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+ + L V+ + + NAV N Y KCG + +VFN + +D+ISW+++++ + +
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
A+++FS M G+ P+ TF +++ +C++ L++ G + + V + + A +V
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESA-LV 519
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
DMY + G L +A+ + A+ W A++
Sbjct: 520 DMYAKCGCLGDAKKVFNRIS-NADTVSWTAII 550
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ SWT +I G AE G + F EM+ ++ P++ +L C + ++
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQ-SQGIFPDQFAYSGILQICIGLDSIEL 189
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ I R + V A++NMY K ++ + +VFN + +++SW+ +I+G
Sbjct: 190 GNMVHAQIVIR-GFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFT 248
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N A LF M+ GV PD TFI + A V++ + + + T
Sbjct: 249 SNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEV-SGYALELGVDSNT 307
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLN 220
++DM + G L+EA + I ++ W A+++
Sbjct: 308 LVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMIS 348
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 3/176 (1%)
Query: 45 LVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
LV++L C L + VH ++ +++ S ++ N V + Y KC D+ A ++F+
Sbjct: 71 LVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQ 130
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
++ ++ SW+ +I+GLA NG + F M G+FPD + ++ C ++ G
Sbjct: 131 MSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELG 190
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ A + T +++MY + +E++ M E W A++
Sbjct: 191 NMV-HAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTMT-EVNVVSWNAMI 244
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 182/289 (62%), Gaps = 3/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+IGGY+ F E+ S+F +M + PN T+ +L A +SIS+L G+
Sbjct: 683 KDVISWNTLIGGYSRNNFPNESFSLFSDM--LLQFRPNAVTMTCILPAAASISSLERGRE 740
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y R L S NA+++MYVKCG + +A +F+ L K++ISW+ +I+G M+G
Sbjct: 741 IHAYALRRGFLEDS-YASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHG 799
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G+ A+ LF M +G+ PD +F A++ AC H GL +G FKAM Y+I P+ +HY
Sbjct: 800 FGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHY 859
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ R G L+EA FI MPIE + S+W +LL+ CRIH+N ++ + + ++ +
Sbjct: 860 TCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEP 919
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A+RWE K++++I GL++ TG SWIEV +
Sbjct: 920 ENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKV 968
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 13/282 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V W ++GGYA+ G EE++S+F +M + A P+E + +L + +S G
Sbjct: 379 KGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIA-PDEHAISCLLKCITCLSCARDGL 437
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H YI + V NA+I+ Y K +G A+ VFN + +D ISW++VISG + N
Sbjct: 438 VAHGYI-VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSN 496
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A++LF M G D VT ++++ AC+ G ++ S ++ +T
Sbjct: 497 GLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVV-HGYSVKTGLIGETSL 555
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR---QELV 239
++DMY + R M + S W A++ + + +FD + QE+V
Sbjct: 556 ANALLDMYSNCSDWQSTNQIFRSMGQKNVVS-WTAMITS---YMRAGLFDKVAGLLQEMV 611
Query: 240 NKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRRMGLKK 279
G+ FA+ S + FAG + + + R G++K
Sbjct: 612 -LDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEK 652
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 1 MPKR--DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP + DV WT+++ YA+ G +EAVS+F++M+ P+ + VL SS+ +L
Sbjct: 162 MPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCG-VSPDAHAVSCVLKCVSSLGSL 220
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ G+ +H + + L + V NA+I +Y +CG + A +VF+ + +D ISW+++I G
Sbjct: 221 TEGEVIHGLLE-KLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGG 279
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILF 167
NG A+ LFS M G VT ++++ AC+ HG V GL+
Sbjct: 280 CFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLW- 338
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +V + + +V MY + G + A M + VW ++
Sbjct: 339 -GLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIM 389
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 117/241 (48%), Gaps = 31/241 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD +SW +MIGG G+ AV +F +M ++ E + T+++VL AC+ +
Sbjct: 265 MHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMW-SQGTEISSVTVLSVLPACAGLGYGLI 323
Query: 61 GQYVHSYISTRYDL-----SVSN-----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
G+ VH Y S + L SV + +G+ ++ MYVKCGD+ A +VF+ ++ K +
Sbjct: 324 GKAVHGY-SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNV 382
Query: 111 S-WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS-----ACSHGGLVDQGL 164
W+ ++ G A G ++L LF M G+ PD+ L+ +C+ GLV G
Sbjct: 383 HVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY 442
Query: 165 IL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
I+ F A V ++ Y ++ ++ +A MP + S W ++++
Sbjct: 443 IVKLGFGAQCAVCN---------ALISFYAKSNMIGDAVLVFNRMPRQDTIS-WNSVISG 492
Query: 222 C 222
C
Sbjct: 493 C 493
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 4/196 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VVSWT MI Y G ++ + QEM P+ + + L A + +L
Sbjct: 579 MGQKNVVSWTAMITSYMRAGLFDKVAGLLQEM-VLDGIRPDVFAVTSALHAFAGDESLKQ 637
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y + R + V NA++ MYVKC +V A +F+ + KD+ISW+T+I G +
Sbjct: 638 GKSVHGY-TIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYS 696
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++ LFS M++ P+ VT ++ A + +++G + A + + +
Sbjct: 697 RNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREI-HAYALRRGFLEDS 754
Query: 181 QHYACVVDMYGRAGLL 196
+VDMY + G L
Sbjct: 755 YASNALVDMYVKCGAL 770
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D +SW ++I G + G EA+ +F M T+ E + TL++VL AC+
Sbjct: 478 MPRQDTISWNSVISGCSSNGLNSEAIELFIRMW-TQGQELDSVTLLSVLPACAQSRYWFA 536
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y S + L + NA+++MY C D Q+F + K+++SW+ +I+
Sbjct: 537 GRVVHGY-SVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYM 595
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G + L M+++G+ PD + + A + + QG
Sbjct: 596 RAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQG 638
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K++++SWT MI GY GF + A+++F++M + EP+ A+ +L AC +
Sbjct: 780 LTKKNLISWTIMIAGYGMHGFGKHAIALFEQM-RGSGIEPDAASFSAILYACCHSGLAAE 838
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISG 118
G+ + Y + ++++ + GD+ A++ + +M D W +++ G
Sbjct: 839 GRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHG 897
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 13/183 (7%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVS---NLVGNAVINMYVKCGDVGIAIQVFNML 104
V+ C +L + H+ I + +++G ++ Y+KCGD+G A VF+ +
Sbjct: 103 VVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGM 162
Query: 105 AYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162
+ D+ W++++S A G ++A+ LF M GV PD ++ S G + +
Sbjct: 163 PPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTE 222
Query: 163 GLILFKAMSTVYEIVPQTQHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G ++ + E + Q A ++ +Y R G +E+A M S W +++
Sbjct: 223 GEVIHGLL----EKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAIS-WNSMI 277
Query: 220 NAC 222
C
Sbjct: 278 GGC 280
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 190/294 (64%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
MP R+VVSW+ MI YA+ G EA+ F+EM +TK++ PN T+V+VL AC+S++AL
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALE 302
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI R S+ ++ +A++ MY +CG + + +VF+ + +D++SW+++IS
Sbjct: 303 QGRLIHGYILRRGLDSILPVI-SALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G GR+A+Q+F M+ NG P VTF++++ ACSH GLV++G LF++M + I PQ
Sbjct: 362 GVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQ 421
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA +++M E VWG+LL +CRIH N E+ + + L
Sbjct: 422 VEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A W++ +++ + GL+K G W+EV ++
Sbjct: 482 ALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMY 535
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 115/235 (48%), Gaps = 22/235 (9%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC----SSISAL 58
KR + W + G EE + ++ +M + E + T VL AC + L
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTADHL 198
Query: 59 SFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ G+ +H++++ R Y+ V + +++MY + G V A VFN + ++++SWS +I+
Sbjct: 199 TKGKEIHAHLTRRGYNSHV--YIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIA 256
Query: 118 GLAMNGCGRQALQLFSLMI--INGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAM 170
A NG +AL+ F M+ P+ VT ++++ AC+ ++Q G IL + +
Sbjct: 257 CYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGL 316
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ ++ + +V MYGR G L+ + M + + W +L+++ +H
Sbjct: 317 DSILPVI------SALVTMYGRCGKLDVGQRVFDRMH-DRDVVSWNSLISSYGVH 364
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 12/232 (5%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+S +I + G ++A+ V ++E+ P++ T ++ C S+LS G VH
Sbjct: 47 ISNNQLIQSLCKEGKLKQALRVL-----SQESSPSQQTYELLILCCGHRSSLSDGLRVHR 101
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+I + +I MY G V A +VF+ + + W+ + L + G G
Sbjct: 102 HILDNGS-DQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH---Y 183
+ L L+ M GV D T+ ++ AC L K + H
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIM 220
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+VDMY R G ++ A MP+ S W A++ AC +N + F+ +R
Sbjct: 221 TTLVDMYARFGCVDYASYVFNGMPVRNVVS-WSAMI-AC-YAKNGKAFEALR 269
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 192/293 (65%), Gaps = 5/293 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R +V+W +MI GY + GF +EA+ +F M++T EP+ AT V+VLSAC+ + A S G
Sbjct: 174 ERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETG-VEPDSATFVSVLSACAHLGAFSLGC 232
Query: 63 YVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+VH YI DL+V ++G ++INMY++CG+V A +VF+ + +++++W+ +ISG
Sbjct: 233 WVHEYIVGNGLDLNV--VLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGT 290
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG G QA++LF M NG+FP+ +TF+A++SAC+H GLV++G LF ++ Y +VP +
Sbjct: 291 NGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVE 350
Query: 182 HYACVVDMYGRAGLLEEAEAFIR-EMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
H C+VDM GRAGLL+EA FI+ E+P ++ A+L AC++H+N ++ + + L+
Sbjct: 351 HNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLA 410
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + ++SN +A A R + +R+ + R LKK+ G S +EV+ +
Sbjct: 411 AEPENPAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTY 463
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 27/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P D +T++I ++ F ++ + M + P+ T +V+ +C+ +SAL
Sbjct: 70 VPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSN-VSPSNYTFTSVIKSCADLSALK 128
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH ++ + + V A++ +Y KCGD+ A +VF+ + + +++W+++ISG
Sbjct: 129 HGRVVHGHVLV-HGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGY 187
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG-----------LVDQGLILFK 168
NG ++A+ LF M GV PD TF++++SAC+H G +V GL L
Sbjct: 188 EQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNV 247
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ T +++MY R G + +A M E W A+++
Sbjct: 248 VLGT------------SLINMYIRCGNVSKAREVFDSMK-ERNVVAWTAMIS 286
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VV+WT MI GY G+ +AV +F EM + PN T V VLSAC+ ++
Sbjct: 273 MKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNG-LFPNSITFVAVLSACAHAGLVNE 331
Query: 61 GQYVHSYISTRYDL 74
G+ + + I Y L
Sbjct: 332 GRRLFASIREEYHL 345
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 236 bits (603), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 189/293 (64%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+VSW T+I G+ + G + A F+ M+++ +P++ T +L+AC+S AL+
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTE 633
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ I+ +D V LVG +I+MY KCG + A QVF+ L K++ SW+++I+G
Sbjct: 634 GRRLHALITEAAFDCDV--LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGY 691
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G++AL+LF M GV PD +TF+ +SAC+H GL+++GL F++M + I P+
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPR 750
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD++GRAGLL EA FI +M +E + VWGALL AC++H N E+ + Q+ +
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F ++SN +A A W++ K+R + G+ KK G SWIEV+ +
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKV 863
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 124/202 (61%), Gaps = 9/202 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV SW ++GGY + G EEA + ++M + +P++ T V++L+AC+ +
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDK 229
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +++ I +D + VG A+INM++KCGD+G A +VF+ L +D+++W+++I+GL
Sbjct: 230 GRELYNLILKAGWDTDL--FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGL 287
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G +QA LF M GV PD V F++L+ AC+H ++QG K + + E+
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK---KVHARMKEVGWD 344
Query: 180 TQHY--ACVVDMYGRAGLLEEA 199
T+ Y ++ MY + G +E+A
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDA 366
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 152/282 (53%), Gaps = 11/282 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+V+WT+MI G A G ++A ++FQ ME+ + +P++ V++L AC+ AL
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQ 330
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ + +D + VG A+++MY KCG + A++VF+++ ++++SW+ +I+G
Sbjct: 331 GKKVHARMKEVGWDTEI--YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
A +G +A F+ MI +G+ P+ VTF++++ ACS + +G I + Y
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ + ++ MY + G L++A ++ + W A++ A H + Q L
Sbjct: 449 RVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQAL 505
Query: 239 VNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ K+G+ + TF + N +D E + I + GL+
Sbjct: 506 L-KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 130/244 (53%), Gaps = 8/244 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K++VV+W MI Y + + A++ FQ + K + +PN +T ++L+ C S +L
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCKSSDSLEL 532
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ + L V NA+++M+V CGD+ A +FN + +D++SW+T+I+G
Sbjct: 533 GKWVH-FLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G + A F +M +G+ PD +TF L++AC+ + +G L A+ T
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRL-HALITEAAFDCDV 650
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++ MY + G +E+A ++P + +S W +++ H E+F ++Q
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS-WTSMITGYAQHGRGKEALELFYQMQQ 709
Query: 237 ELVN 240
E V
Sbjct: 710 EGVK 713
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D ++ ++ G EA+ V + ++ + + T +L C L G+
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSS-HIQIYRQTYSALLQLCIKFKNLGDGER 131
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
++++I + + + N +INMY KCG+ A Q+F+ + KD+ SW+ ++ G +G
Sbjct: 132 IYNHIK-KSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
+A +L M+ + V PD TF+++++AC+ VD+G L+
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELY 234
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 190/291 (65%), Gaps = 4/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+ VSWT +I GYA+ G EA+ VFQ M + EP+E TL+ VLSAC+ + +L G+
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACADLGSLELGER 271
Query: 64 VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ SY+ R + +VS + NAVI+MY K G++ A+ VF + +++++W+T+I+GLA +
Sbjct: 272 ICSYVDHRGMNRAVS--LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATH 329
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL +F+ M+ GV P+DVTFIA++SACSH G VD G LF +M + Y I P +H
Sbjct: 330 GHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEH 389
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAG L EA+ I+ MP +A ++WG+LL A +H + E+ + EL+ +
Sbjct: 390 YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLE 449
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N ++ RW+++ +R+ ++ +G+KK G S IEV ++
Sbjct: 450 PNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVY 500
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGI 96
A+P+ T VL +S + FG+ +H + +D SV + G +I MY CG +G
Sbjct: 112 AKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG--LIQMYFSCGGLGD 169
Query: 97 AIQVFNMLAYKDM---------------------------------ISWSTVISGLAMNG 123
A ++F+ + KD+ +SW+ VISG A +G
Sbjct: 170 ARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSG 229
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVP 178
+A+++F M++ V PD+VT +A++SAC+ G ++ G + + M+ +
Sbjct: 230 RASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL-- 287
Query: 179 QTQHYACVVDMYGRAGLLEEA 199
V+DMY ++G + +A
Sbjct: 288 ----NNAVIDMYAKSGNITKA 304
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+VV+WTT+I G A G EA+++F M K PN+ T + +LSACS + + G+
Sbjct: 313 ERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG-VRPNDVTFIAILSACSHVGWVDLGK 371
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+ + + ++Y + + +I++ + G + A +V + +K
Sbjct: 372 RLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK 416
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK D V+W+ MI G+ G AV +F+EM+ P+E T+V+VLSAC+ + AL G
Sbjct: 189 PKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQ-VMGVCPDEITMVSVLSACADLGALELG 247
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++V SY+ + ++ S + NA+I+M+ KCG+V AI++F + + ++SW++VI+GLAM
Sbjct: 248 KWVESYVEKK-NIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAM 306
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G A+ LF M+ NG+ PDDV FI ++SACSH GLVD+G F +M + IVP+ +
Sbjct: 307 HGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVE 366
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C+VD+ R G ++EA F+++MP E +W ++ AC ++ + I +EL+
Sbjct: 367 HYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKS 426
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+SN +A +WE K+R+ + G+KK G + IEVN ++
Sbjct: 427 EPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMY 478
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 10/210 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D + T+I Y++ + +F PN+ T VL C+ I +L G
Sbjct: 85 PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLG 144
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--AIQVFNMLAYKDMISWSTVISGL 119
+ VH + ++ V N +I+MY G+ G A +VF+ D ++WS +I+G
Sbjct: 145 KCVHGCV-VKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGF 203
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI--V 177
GC +A+ LF M + GV PD++T ++++SAC+ G ++ G K + + E +
Sbjct: 204 VRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG----KWVESYVEKKNI 259
Query: 178 PQTQHYA-CVVDMYGRAGLLEEAEAFIREM 206
P++ ++DM+ + G +++A R+M
Sbjct: 260 PKSVELCNALIDMFAKCGNVDKAIKLFRQM 289
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R +VSWT++I G A G +AVS+F EM + P++ + VLSACS +
Sbjct: 289 MDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENG-ITPDDVAFIGVLSACSHSGLVDK 347
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+Y + + + ++++ + G V A + + ++ + I W T+I+
Sbjct: 348 GRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITAC 407
Query: 120 AMNG 123
G
Sbjct: 408 HATG 411
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 186/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R++V+W ++I GYA G EA+++F+EM + EP+ T+V++LSAC+ + AL+
Sbjct: 56 MAERNLVTWNSVINGYALNGRPNEALTLFREM-GLRGVEPDGFTMVSLLSACAELGALAL 114
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ + L + GNA++++Y KCG + A +VF+ + K ++SW+++I GLA
Sbjct: 115 GRRAHVYM-VKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLA 173
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G++AL+LF + G+ P ++TF+ ++ ACSH G+VD+G FK M Y IVP+
Sbjct: 174 VNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKI 233
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+++A FI+ MP++ VW LL AC IH + + + R +L+
Sbjct: 234 EHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQ 293
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D +K+R + R G+KK G S +E+
Sbjct: 294 LEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVEL 341
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS I+ R V N +++MY CG A ++F ++A +++++W++VI+G A
Sbjct: 14 GEKVHS-IAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYA 72
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +AL LF M + GV PD T ++L+SAC+ G + G M V +
Sbjct: 73 LNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG-LDGNL 131
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y + G + +A EM E W +L+
Sbjct: 132 HAGNALLDLYAKCGSIRQAHKVFDEME-EKSVVSWTSLI 169
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 188/319 (58%), Gaps = 31/319 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVF-------------------QEMEKTKEAE-- 39
M +DVVSWT+M+ YA +G E AV +F QE + T+ E
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELF 358
Query: 40 ---------PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
P++ATLV++LS CS+ L+ G+ H YI ++VS + N++I+MY K
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI-ITVSVTLCNSLIDMYAK 417
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG + AI +F + K+++SW+ +I LA++G G +A+++F M +G++PD++TF L
Sbjct: 418 CGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGL 477
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SACSH GLVD G F M + + I P +HYAC+VD+ GR G L EA I++MP++
Sbjct: 478 LSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKP 537
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ VWGALL ACRI+ N E+ I ++L+ + G + L+SN ++ + RW+D KIR
Sbjct: 538 DVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRK 597
Query: 271 EIRRMGLKKKTGCSWIEVN 289
+ G+KK S+IE++
Sbjct: 598 IMDDSGIKKCRAISFIEID 616
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 39/255 (15%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R +VSW +MI GY++ GFC+EA+ +FQEM + E + TLV++LSA S L G++
Sbjct: 201 RTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLG-VEADVFTLVSLLSASSKHCNLDLGRF 259
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--------------------------- 96
VH YI + + ++V NA+I+MY KCG +
Sbjct: 260 VHLYIVIT-GVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQG 318
Query: 97 ----AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
A+Q+FN + K+++SW+++I L G +A++LF M I+GV PDD T ++++S
Sbjct: 319 LVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILS 378
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEA 210
CS+ G + G +A + + + C ++DMY + G L+ A MP E
Sbjct: 379 CCSNTGDLALGK---QAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP-EK 434
Query: 211 EWSVWGALLNACRIH 225
W ++ A +H
Sbjct: 435 NVVSWNVIIGALALH 449
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 112/222 (50%), Gaps = 6/222 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + + +I GY+ +++ +F++M PN+ T VL AC++
Sbjct: 97 IPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPM-PNQFTFPFVLKACAAKPFYWE 155
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH+ + + + V NA++ YV C + A QVF+ ++ + ++SW+++I+G +
Sbjct: 156 AVIVHAQ-AIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYS 214
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
G +A+ LF M+ GV D T ++L+SA S +D G + + T EI
Sbjct: 215 KMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSI 274
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++DMY + G L+ A+ +M ++ + W +++NA
Sbjct: 275 VTN--ALIDMYAKCGHLQFAKHVFDQM-LDKDVVSWTSMVNA 313
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW++MI GYA+ +E +++FQEM+ + +P+E TLV+V+SAC+ ++AL
Sbjct: 468 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG-FKPDETTLVSVISACARLAALEQ 526
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+YI R L+++ ++G +I+MY+KCG V A++VF + K + +W+ +I GLA
Sbjct: 527 GKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLA 585
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG +L +FS M V P+++TF+ ++ AC H GLVD+G F +M ++I P
Sbjct: 586 MNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNV 645
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE + MP+ + + WGALL AC+ H + EM + ++L+
Sbjct: 646 KHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE 705
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+SN +A +W+D +IR + + + K GCS IE N
Sbjct: 706 LQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 43/254 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+V+W+ +I + + EEA+ F M K +E V+ LSAC+++ ++
Sbjct: 336 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNM 394
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ--------------------- 99
G+ +HS S NL NA+I MY KCGD+ +A +
Sbjct: 395 GKLIHSLSLKIGTESYINL-QNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 453
Query: 100 ----------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+F+ + KD++SWS++ISG A N + L LF M ++G PD+ T ++
Sbjct: 454 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 513
Query: 150 LISACSHGGLVDQGLILFKAMS----TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+ISAC+ ++QG + + T+ I+ T ++DMY + G +E A
Sbjct: 514 VISACARLAALEQGKWVHAYIKRNGLTINVILGTT-----LIDMYMKCGCVETALEVFYG 568
Query: 206 MPIEAEWSVWGALL 219
M IE S W AL+
Sbjct: 569 M-IEKGISTWNALI 581
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 41/162 (25%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW +++ GY E G EEA ++ +M +
Sbjct: 278 DSVSWNSILAGYIEIGNVEEAKHIYHQMPER----------------------------- 308
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
S + N++I ++ G V A ++F+ + KDM++WS +I+ N
Sbjct: 309 ------------SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 356
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+A++ F M GV D+V ++ +SAC++ +V+ G ++
Sbjct: 357 YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 398
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 236 bits (602), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+WT +I GY + ++ + VF+EM K+ A PNE TL +VLSAC+ + AL
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + + ++ G +I++YVKCG + AI VF L K++ +W+ +I+G A
Sbjct: 325 GRRVHCYM-IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R A LF M+ + V P++VTF+A++SAC+HGGLV++G LF +M + + P+
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKA 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD++GR GLLEEA+A I MP+E VWGAL +C +H++ E+ ++
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N ++ + W++ ++R +++ + K G SWIEV
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 3/222 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WT MI G+ G EA+ F EM+KT A NE T+V+VL A + + FG+
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA-ANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + +G+++++MY KC A +VF+ + +++++W+ +I+G +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
C + + +F M+ + V P++ T +++SAC+H G + +G + M I T
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM-IKNSIEINTTAG 344
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D+Y + G LEEA + E E W A++N H
Sbjct: 345 TTLIDLYVKCGCLEEA-ILVFERLHEKNVYTWTAMINGFAAH 385
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +L A + + Q+ H++I ++ L V N++I+ Y G A +
Sbjct: 102 PSRHTFPPLLKAVFKLRDSNPFQF-HAHI-VKFGLDSDPFVRNSLISGYSSSGLFDFASR 159
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ KD+++W+ +I G NG +A+ F M GV +++T ++++ A
Sbjct: 160 LFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVED 219
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEW 212
V G +V+ + +T C +VDMYG+ ++A+ EMP
Sbjct: 220 VRFG-------RSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNV 271
Query: 213 SVWGALL 219
W AL+
Sbjct: 272 VTWTALI 278
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 187/293 (63%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D + W MI GY + G EA+ +F+ M ++ AEP+E T+V VLSA + + +
Sbjct: 211 LPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRS-SAEPDEVTVVLVLSAVAQLGTVES 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY+ + ++ V A+++MY KCG + A+ VF+ + KD++ W+ +I+G A
Sbjct: 270 GKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYA 329
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G R+AL++F + G++P D+TFI L++ACSH GLV++G F++M Y I P+
Sbjct: 330 MHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKI 389
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+EEA ++ + I + +W +LL ACR+H+N + I LV
Sbjct: 390 EHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVA 449
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A +WE+ ++R ++ G++K+ GCS IE++ ++
Sbjct: 450 NGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVY 502
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 118/264 (44%), Gaps = 41/264 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+T+ I ++ RG +++ +M ++ P TL L AC LS G+ +H+Y
Sbjct: 90 YTSAIHAHSSRGLHLPGLALLSDM-LSEGLLPTAHTLSASLPACR---GLSLGRALHAY- 144
Query: 69 STRYDLSVSNLVGNAVINMY---------------------------VKC----GDVGIA 97
+ + LS + V A+++MY + C G + A
Sbjct: 145 AFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDA 204
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++F+ L KD I W+ +I G +G +ALQLF M+ + PD+VT + ++SA +
Sbjct: 205 RRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQL 264
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G V+ G L + + + +VDMY + G LE+A A + + VW A
Sbjct: 265 GTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIG-NKDIVVWNA 323
Query: 218 LLNACRIHRND----EMFDPIRQE 237
++N +H + EMF +R +
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQ 347
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 177/300 (59%), Gaps = 12/300 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWTTM+ G A G +A+ +F EM + E ++ LV LSAC+ + L
Sbjct: 133 MPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRAC-VELDQVALVAALSACAELGDLKL 191
Query: 61 GQYVHSYISTRYDL----SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
G+++H Y+ R+ S + NA+I+MY CG + A QVF + K +SW+++I
Sbjct: 192 GRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSMI 251
Query: 117 SGLAMNGCGRQALQLFSLMI-----INGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
A G G++AL LF M+ ++GV PD++TFI ++ ACSH G VD+G +F +M
Sbjct: 252 MAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASMK 311
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
+ I P +HY C+VD+ RAGLL+EA I MP+ ++WGALL CRIHRN E+
Sbjct: 312 HTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLNPNDAIWGALLGGCRIHRNSELA 371
Query: 232 DPIRQELVNK--KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +LV + + G L+SN +A RW+D +R ++ MG+KK G SWI++N
Sbjct: 372 SQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSWIQIN 431
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 36/247 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I GYA +AV + M +K AEP+ T ++LSAC+ + G+ VH+ +
Sbjct: 9 WNHVIRGYARSHTPWKAVECYTHMVSSK-AEPDGFTHSSLLSACARGGLVKEGEQVHATV 67
Query: 69 STR-------YDLSV-----------------------SNLVGNAVINMYVKCGDVGIAI 98
+ D S+ S + N+++ YV+C D A
Sbjct: 68 LVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGAR 127
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+++ ++++SW+T+++G A NG RQAL LF M V D V +A +SAC+ G
Sbjct: 128 RVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELG 187
Query: 159 LVDQGLILFKAMSTVYEI----VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+ G + + + P + ++ MY G+L EA +MP ++ S
Sbjct: 188 DLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVS- 246
Query: 215 WGALLNA 221
W +++ A
Sbjct: 247 WTSMIMA 253
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 189/293 (64%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+VSW T+I G+ + G + A F+ M+++ +P++ T +L+AC+S AL+
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESG-IKPDKITFTGLLNACASPEALTE 633
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ I+ +D V LVG +I+MY KCG + A QVF+ L K++ SW+++I+G
Sbjct: 634 GRRLHALITEAAFDCDV--LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGY 691
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G++AL+LF M GV PD +TF+ +SAC+H GL+++GL F++M + I P+
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPR 750
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD++GRAGLL EA FI +M +E + VWGALL AC++H N E+ + Q+ +
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G F ++SN +A A W++ K+R + G+ KK G SWIEV+ +
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKV 863
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 124/202 (61%), Gaps = 9/202 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV SW ++GGY + G EEA + ++M + +P++ T V++L+AC+ +
Sbjct: 171 MREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDK 229
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +++ I +D + VG A+INM++KCGD+G A +VF+ L +D+++W+++I+GL
Sbjct: 230 GRELYNLILKAGWDTDL--FVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGL 287
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G +QA LF M GV PD V F++L+ AC+H ++QG K + + E+
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK---KVHARMKEVGWD 344
Query: 180 TQHY--ACVVDMYGRAGLLEEA 199
T+ Y ++ MY + G +E+A
Sbjct: 345 TEIYVGTAILSMYTKCGSMEDA 366
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 152/282 (53%), Gaps = 11/282 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+V+WT+MI G A G ++A ++FQ ME+ + +P++ V++L AC+ AL
Sbjct: 272 LPTRDLVTWTSMITGLARHGRFKQACNLFQRMEE-EGVQPDKVAFVSLLRACNHPEALEQ 330
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ + +D + VG A+++MY KCG + A++VF+++ ++++SW+ +I+G
Sbjct: 331 GKKVHARMKEVGWDTEI--YVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGF 388
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
A +G +A F+ MI +G+ P+ VTF++++ ACS + +G I + Y
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ + ++ MY + G L++A ++ + W A++ A H + Q L
Sbjct: 449 RVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALATFQAL 505
Query: 239 VNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ K+G+ + TF + N +D E + I + GL+
Sbjct: 506 L-KEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE 546
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 130/244 (53%), Gaps = 8/244 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K++VV+W MI Y + + A++ FQ + K + +PN +T ++L+ C S +L
Sbjct: 474 ISKQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCKSSDSLEL 532
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ + L V NA+++M+V CGD+ A +FN + +D++SW+T+I+G
Sbjct: 533 GKWVH-FLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFV 591
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G + A F +M +G+ PD +TF L++AC+ + +G L A+ T
Sbjct: 592 QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRL-HALITEAAFDCDV 650
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++ MY + G +E+A ++P + +S W +++ H E+F ++Q
Sbjct: 651 LVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYS-WTSMIAGYAQHGRGKEALELFYQMQQ 709
Query: 237 ELVN 240
E V
Sbjct: 710 EGVK 713
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 2/164 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D ++ ++ G EA+ V + ++ + + T +L C L G+
Sbjct: 73 KDTQKANAVLNRLSKAGQFNEAMQVLERVDSS-HIQIYRQTYSALLQLCIKFKNLGDGER 131
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
++++I + + + N +INMY KCG+ A Q+F+ + KD+ SW+ ++ G +G
Sbjct: 132 IYNHIK-KSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
+A +L M+ + V PD TF+++++AC+ VD+G L+
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELY 234
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++ +W+ MI GYA+ E+A+ +F+ M K + NE +V+V+S+C+ + AL F
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM-KREGVVANETVMVSVISSCAHLGALEF 267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + Y+ + ++V+ ++G A+++M+ +CGD+ AI VF L D +SWS++I GLA
Sbjct: 268 GERAYEYV-VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +A+ FS MI G P DVTF A++SACSHGGLV++GL +++ M + I P+
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRL 386
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM GRAG L EAE FI +M ++ + GALL AC+I++N E+ + + L+
Sbjct: 387 EHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK 446
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + L+SN +A A +W+ +RD ++ +KK G S IE++ I
Sbjct: 447 VKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 47/239 (19%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
+A + +M K++ P+ T ++ A S + + G+ HS I R+ V N+
Sbjct: 100 KAFGFYTQMLKSR-IWPDNITFPFLIKASSEMECVLVGEQTHSQI-VRFGFQNDVYVENS 157
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISW------------------------------- 112
+++MY CG + A ++F + ++D++SW
Sbjct: 158 LVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTW 217
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
S +I+G A N C +A+ LF M GV ++ +++IS+C+H G ++ G
Sbjct: 218 SIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG-------ER 270
Query: 173 VYEIVPQTQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
YE V ++ +VDM+ R G +E+A +P E + W +++ +H
Sbjct: 271 AYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVH 328
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 26/242 (10%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV-------KCGDVGIAIQV 100
+L +CSS S L + +H ++ R L V + ++ + V +G A +
Sbjct: 18 LLQSCSSFSDL---KIIHGFL-LRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGI 73
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + ++ ++ +I + +A ++ M+ + ++PD++TF LI A S V
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 161 DQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWG 216
L+ + S + Q Y +V MY G + A +M W+
Sbjct: 134 ---LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190
Query: 217 ALLNACRIHRN-DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275
A C + N EMFD + ++ T+++M N +A + +E A + + ++R
Sbjct: 191 AGYCKCGMVENAREMFDEMPHR-------NLFTWSIMINGYAKNNCFEKAIDLFEFMKRE 243
Query: 276 GL 277
G+
Sbjct: 244 GV 245
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 182/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSWT +I GYA G +A+ +F +M P++ T + L AC+SI++L
Sbjct: 284 MPEKNPVSWTALISGYARNGMGHKALELFTKM-MLFHVRPDQFTFSSCLCACASIASLKH 342
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ +H+Y+ R + + +V +A+I+MY KCG +GI +VF+++ K D++ W+T+IS L
Sbjct: 343 GKQIHAYL-LRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISAL 401
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +GCG +A+Q+ M+ +G PD +TF+ +++ACSH GLV QGL F++MS Y IVP
Sbjct: 402 AQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPS 461
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC++D+ GRAG EE + +MP + + VW ALL CRIH + E+ + L+
Sbjct: 462 QEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLI 521
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S + L+S+ +A RWE K+R + +KK+ SW+E+ +
Sbjct: 522 ELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKV 574
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 123/256 (48%), Gaps = 34/256 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW TM+ +A+ G+ +EA+ + E + + N + VL+ C + +
Sbjct: 152 MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLG-IQCNGFSFAGVLTVCVKLKEVGL 210
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST------ 114
+ VH I LS + ++ ++V++ YVKCG +G A ++F+ ++ +D+++W+T
Sbjct: 211 TRQVHGQILVAGFLS-NVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYA 269
Query: 115 -------------------------VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ISG A NG G +AL+LF+ M++ V PD TF +
Sbjct: 270 KWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSS 329
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ AC+ + G + + + P T + ++DMY + G L M +
Sbjct: 330 CLCACASIASLKHGKQIHAYLLRI-NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNK 388
Query: 210 AEWSVWGALLNACRIH 225
+ +W +++A H
Sbjct: 389 LDVVLWNTIISALAQH 404
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 5/144 (3%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
EAVS + + + + + TL ++L C+ AL G+ VH ++ + N
Sbjct: 42 EAVSSLENLAR-RGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNH 100
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
+INMY KCG A +VF+ ++ +++ SW+ ++SG A G + A +LF M D
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEK----D 156
Query: 144 DVTFIALISACSHGGLVDQGLILF 167
V++ ++ A + G D+ L +
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFY 180
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW++MI GYA+ +E +++FQEM+ + +P+E TLV+V+SAC+ ++AL
Sbjct: 333 MPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSG-FKPDETTLVSVISACARLAALEQ 391
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+YI R L+++ ++G +I+MY+KCG V A++VF + K + +W+ +I GLA
Sbjct: 392 GKWVHAYIK-RNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLA 450
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG +L +FS M V P+++TF+ ++ AC H GLVD+G F +M ++I P
Sbjct: 451 MNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNV 510
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE + MP+ + + WGALL AC+ H + EM + ++L+
Sbjct: 511 KHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE 570
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+SN +A +W+D +IR + + + K GCS IE N I
Sbjct: 571 LQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVI 622
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 43/254 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+V+W+ +I + + EEA+ F M K +E V+ LSAC+++ ++
Sbjct: 201 MLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNM 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ--------------------- 99
G+ +HS S NL NA+I MY KCGD+ +A +
Sbjct: 260 GKLIHSLSLKIGTESYINL-QNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYL 318
Query: 100 ----------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+F+ + KD++SWS++ISG A N + L LF M ++G PD+ T ++
Sbjct: 319 KCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVS 378
Query: 150 LISACSHGGLVDQGLILFKAMS----TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+ISAC+ ++QG + + T+ I+ T ++DMY + G +E A
Sbjct: 379 VISACARLAALEQGKWVHAYIKRNGLTINVILGTT-----LIDMYMKCGCVETALEVFYG 433
Query: 206 MPIEAEWSVWGALL 219
M IE S W AL+
Sbjct: 434 M-IEKGISTWNALI 446
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 41/162 (25%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW +++ GY E G EEA ++ +M +
Sbjct: 143 DSVSWNSILAGYIEIGNVEEAKHIYHQMPER----------------------------- 173
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
S + N++I ++ G V A ++F+ + KDM++WS +I+ N
Sbjct: 174 ------------SIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEM 221
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+A++ F M GV D+V ++ +SAC++ +V+ G ++
Sbjct: 222 YEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 263
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/289 (41%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSWTTMI GY G +A+ VF+EM+ EP+E +++ VL AC+ + AL
Sbjct: 203 MPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVG-IEPDEISIIAVLPACAQLGALEV 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y L + + NA+I MY KCG + A +F+ L KD+ISWST+I GLA
Sbjct: 262 GKWIHMYADKNGFLRKTGIC-NALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+QLF M V P+++TF+ ++ ACSH GL D+GL F MS Y I P+
Sbjct: 321 NHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEI 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GR+G L +A I +MPI+ + +W +LL++CRIHRN ++ ++L+
Sbjct: 381 EHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLME 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N +A +WED + IR IR +KK G S IEVN
Sbjct: 441 LEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVN 489
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 114/254 (44%), Gaps = 36/254 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ ++ +I YA A+SVF +M T P++ T V+ +C+ I G
Sbjct: 72 NIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGM 131
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI------------ 110
VH + ++ + NA+I+MY K GD+ A +VF ++++D+I
Sbjct: 132 QVHGLV-YKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKL 190
Query: 111 -------------------SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
SW+T+I+G GC AL +F M + G+ PD+++ IA++
Sbjct: 191 GQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVL 250
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
AC+ G ++ G + + + +T +++MY + G ++EA ++ +E +
Sbjct: 251 PACAQLGALEVGKWI-HMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQL-VEKD 308
Query: 212 WSVWGALLNACRIH 225
W ++ H
Sbjct: 309 VISWSTMIGGLANH 322
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 191/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKR++VSW+ +I GY + G +A+ +F+EM+ K + +E + +LSAC+ + AL
Sbjct: 259 MPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAK-VKMDEVIVTTLLSACARLGALDQ 317
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H YI ++ + V + A+I+MY KCG + +A +VF K + WS++I GLA
Sbjct: 318 GRWLHMYID-KHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLA 376
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+ G +A++LF+ MI G+ P ++T+I +++AC+H GLVD GL +F M + P+
Sbjct: 377 MHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRM 436
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAGLL +A + MP++A+ ++W ALL+AC++HRN E+ + + + L+
Sbjct: 437 QHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVELGEQVGRILIK 496
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L SN +A +RW+ + K+R E++ G++K GCS IE+N ++
Sbjct: 497 MEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELNGAV 548
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 114/285 (40%), Gaps = 65/285 (22%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALSFGQ 62
R+ +TTMI YA G EA + + M + PN+ T V SACS + + G+
Sbjct: 96 RNSFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGK 155
Query: 63 YVHS-YISTRYDLSVSN---------LVG---------------------NAVINMYVKC 91
H+ I ++ V + VG N +IN YVK
Sbjct: 156 QAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKS 215
Query: 92 GDVGIAIQVFNMLAYKD-------------------------------MISWSTVISGLA 120
GD+ A ++F+ + +D ++SWS +I G
Sbjct: 216 GDLDEARRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYI 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
GC +AL+LF M + V D+V L+SAC+ G +DQG L + + I
Sbjct: 276 QIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDK-HGIKVDA 334
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G ++ A +E + + VW +++ +H
Sbjct: 335 HLSTALIDMYSKCGRIDMAWKVFQETG-DKKVFVWSSMIGGLAMH 378
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 190/289 (65%), Gaps = 9/289 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RDVV+W +I Y+ G +A+S++ +M T++ +PN +TL+ V+SAC++++AL G+
Sbjct: 489 RRDVVTWNALISSYSHVGRSNDALSLYGQM-LTEDVKPNSSTLITVISACANLAALEHGE 547
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+HSY+ D+S+S A+++MY KCG +G A +F+ + +D+++W+ +ISG
Sbjct: 548 LLHSYVKNMGLESDVSIST----ALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGY 603
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G QAL+LFS M + P+ +TF+A++SAC H GLVD+G LF M Y + P
Sbjct: 604 GMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAGLVDEGRKLFIRMGG-YRLEPN 662
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ G++GLL+EAE + MPI+ + VWG LL+AC++H N EM + ++
Sbjct: 663 LKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAF 722
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + LMSN++ A++W++ K+RD ++ G++K G S ++V
Sbjct: 723 SSDPRNDGYYILMSNSYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVDV 771
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 8/282 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSWT +IG Y RG EAV +FQEME++ +P+E + VLS S + ++
Sbjct: 282 LTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSG-LQPDEVLVSCVLSGLGSSANVNR 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I R + S L+ N++I+MY K V +A VF ML +D SWS +++G
Sbjct: 341 GKAFHAVI-IRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYC 399
Query: 121 MNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G + L+L+ M + D + ++ IS+CS G + G + ++ ++
Sbjct: 400 KAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVH--CYSIKCLL 457
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
+ ++ MYGR G E A + + W AL+++ + R+++ Q
Sbjct: 458 DENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQ 517
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
L + T + + A E + ++ MGL+
Sbjct: 518 MLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLE 559
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 4/166 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK---TKEAEPNEATLVNVLSACSSISA 57
M +RDVV+WT ++ G G C + + +M + A PN T+ + L AC +
Sbjct: 177 MVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGE 236
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
LS G+ +H Y + + + LV +A+ +MY KC A +F L KD++SW+ +I
Sbjct: 237 LSAGRCLHGY-AVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIG 295
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G R+A++LF M +G+ PD+V ++S V++G
Sbjct: 296 AYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRG 341
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 20/234 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D W +++ + + A+S + M + A P+ T SA + ++AL G
Sbjct: 74 PCPDTFLWNSLLRSHHCASDFDSALSAHRRM-RASGARPSRFTAPLAASAAAELAALPVG 132
Query: 62 QYVHSYISTRYDLSVSN---LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
VHSY S ++ L + V ++++ MY +CG +G A+++F+ + +D+++W+ V+SG
Sbjct: 133 TSVHSY-SVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSG 191
Query: 119 LAMNG-CGR---QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
NG CG+ +Q+ L +G P+ T + + AC G + G L Y
Sbjct: 192 CVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHG-----Y 246
Query: 175 EIVPQTQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 223
+ + A VV MY + + E+A E+ E + W L+ A CR
Sbjct: 247 AVKEGIRDCALVVSALFSMYSKCDMTEDACILFPEL-TEKDVVSWTGLIGAYCR 299
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M +RDVV+W MI GY G +A+ +F EME +PN T + +LSAC
Sbjct: 588 MLQRDVVTWNVMISGYGMHGEANQALKLFSEME-AGSIKPNSLTFLAILSAC 638
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 178/297 (59%), Gaps = 9/297 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI G A+ G C++A+ +F EM + + ++ LV LSAC+ + L
Sbjct: 211 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKL 269
Query: 61 GQYVHSYISTRYDLSVSNLV---GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G ++HSYI R L+ N++I+MY CG + A +VF + + ISW+++I+
Sbjct: 270 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 329
Query: 118 GLAMNGCGRQALQLFSLMIINGV---FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A G +AL +F M G PD +TFI ++ ACSH G VDQG F+ M+ +
Sbjct: 330 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKW 389
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
IVP+ +HY C+VD+ RAG L+EA I MP++ +VWGALL CRIH+N E+ +
Sbjct: 390 GIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHV 449
Query: 235 RQELV--NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
Q+L K + G L+SN +A A RW+D +R ++ +G++K G SW+++N
Sbjct: 450 AQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 506
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 34/188 (18%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY- 67
W MI G+++ + V ++ M + EAEPNE T ++ C+ L G+ VH
Sbjct: 84 WNQMIRGHSQSETPHKLVELYNRMVEA-EAEPNEFTYSFLIGGCARSRLLREGEQVHGRV 142
Query: 68 --------------------ISTRYD-----------LSVSNLVG-NAVINMYVKCGDVG 95
I+ YD + N+V N+++ YV+CGDV
Sbjct: 143 VANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD 202
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F+ + ++++SW+T+I+G A G +QAL LF M GV D V +A +SAC+
Sbjct: 203 GARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 262
Query: 156 HGGLVDQG 163
G + G
Sbjct: 263 ELGDLKLG 270
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 36 KEAEPNEAT--------LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87
+EA P T ++L C +I L + +H+ I S N + +++
Sbjct: 4 EEASPANLTGLRALQQHFFSLLQTCDTIKKL---KQIHTQIIVN-GFSQKNFLLVKLLSF 59
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y+ G++ A +VF + W+ +I G + + + ++L++ M+ P++ T+
Sbjct: 60 YITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTY 119
Query: 148 IALISACSHGGLVDQG 163
LI C+ L+ +G
Sbjct: 120 SFLIGGCARSRLLREG 135
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 186/322 (57%), Gaps = 31/322 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------------------------- 35
M K+D+VSW TM+ YA+ G + A+ +F+EM++
Sbjct: 383 MVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLDALKSF 442
Query: 36 -----KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
+ +P+++T LS+C+ ++AL G+ +H + + + V NA+I MY K
Sbjct: 443 MLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLV-MKSGYATDLFVSNALITMYAK 501
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG + A +F + + D++SW+++I+ A+NG GR+AL+LF M + GV PD+VTF+ +
Sbjct: 502 CGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGI 561
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SACSH GL+DQGL LFK M Y I P +HYAC+VD+ GRAG LEEA +R M I A
Sbjct: 562 LSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINA 621
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+WGALL ACRIH N E+ ++L+ + + L+SN A A RW++ ++R
Sbjct: 622 NAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRR 681
Query: 271 EIRRMGLKKKTGCSWIEVNPSI 292
++ G +K+ G SWIE+ +
Sbjct: 682 LMKEKGAEKQPGWSWIELQNRV 703
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 107/228 (46%), Gaps = 24/228 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM------------------EKTKEAEP-- 40
MP+++ +SWTT+I GY G +EA + +M ++ +A
Sbjct: 290 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIF 349
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQ 99
N+ ++ +V+ + I+ S + + + ++V N ++ Y + G + AI+
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIK 409
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F + K+++SW+++ISGL NG AL+ F LM G PD TF +S+C+H
Sbjct: 410 IFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469
Query: 160 VDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ G L + M + Y + ++ MY + G + AE +++
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSN--ALITMYAKCGSISSAELLFKDI 515
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 24/236 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + VSW TM+ G+A G EA +F +M + NV++ + I+A
Sbjct: 228 IPNPNTVSWVTMLCGFARFGKIAEARRLFDQM-----------PIRNVVAWNAMIAAYVQ 276
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V IS ++ N + VIN YV+ G + A Q+ N + Y+++ + + +ISG
Sbjct: 277 NCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGY 336
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N A Q+F+ + I V V + +I+ S G +D+ L LFK M +
Sbjct: 337 VQNKRMDDARQIFNQISIRDV----VCWNTMIAGYSQCGRMDEALHLFKQM-----VKKD 387
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ +V Y + G ++ A EM E W +L++ + +N D ++
Sbjct: 388 IVSWNTMVASYAQVGQMDAAIKIFEEMK-EKNIVSWNSLISG--LTQNGSYLDALK 440
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 19/221 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW +MI Y EEA +F +M T++ + +++ + L+
Sbjct: 72 MPQRNIVSWNSMIAAYLHNDRVEEARQLFDKM-PTRDL----YSWTLMITCYTRNGELAK 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + +++ + NA++ Y K A ++F+ + KD++SW+++++G
Sbjct: 127 ARNLFNLLPYKWN----PVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYT 182
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG R LQ F M V V++ ++ G ++ F+ + P T
Sbjct: 183 RNGEMRLGLQFFEEMAERDV----VSWNLMVDGFVEVGDLNSSWEFFEKIPN-----PNT 233
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ ++ + R G + EA +MPI W A++ A
Sbjct: 234 VSWVTMLCGFARFGKIAEARRLFDQMPIR-NVVAWNAMIAA 273
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I K G + AI+VF + +K+ ++ +++IS A NG A QLF M +
Sbjct: 19 NLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNI- 77
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ ++I+A H V++ LF M T + ++ Y R G L +A
Sbjct: 78 ---VSWNSMIAAYLHNDRVEEARQLFDKMPT-----RDLYSWTLMITCYTRNGELAKARN 129
Query: 202 FIREMP 207
+P
Sbjct: 130 LFNLLP 135
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I+ + K G + A Q+F+ + ++++SW+++I+ N +A QLF M ++
Sbjct: 50 NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM---YGRAGLLEE 198
++ +I+ + G + + LF ++P + C M Y + +E
Sbjct: 110 ----SWTLMITCYTRNGELAKARNLFN-------LLPYKWNPVCCNAMVAGYAKNRQFDE 158
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
A MP + + W ++L RN EM
Sbjct: 159 ARRLFDAMPAK-DLVSWNSMLTG--YTRNGEM 187
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 182/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD V W MI GY + G EA+ +F+ M K K A+PNE T+++VLSAC + AL
Sbjct: 163 MEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK-AKPNEVTVLSVLSACGQLGALES 221
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSYI + + VG A+++MY KCG + A VF+ + KD+++W+++I G A
Sbjct: 222 GRWVHSYIENN-GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 280
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G ++ALQLF M G+ P ++TFI ++SAC H G V +G +F M Y I P+
Sbjct: 281 MXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKI 340
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V++ GRAG +E+A ++ M IE + +WG LL ACR+H + + I + LV+
Sbjct: 341 EHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVD 400
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A W+ ++R ++ G+KK+ GCS IEVN +
Sbjct: 401 QNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 452
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 38/225 (16%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V WT +I G+A RG E+A++ + +M T+ EPN T ++L C + G+ +H
Sbjct: 40 VFFWTAIIHGHALRGLHEQALNFYAQM-LTQGVEPNAFTFSSILKLC----PIEPGKALH 94
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-------------- 111
S + + V ++++Y + GDV A Q+F+ + K ++S
Sbjct: 95 SQ-AVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGEL 153
Query: 112 -----------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
W+ +I G NG +AL LF M+ P++VT ++++SAC
Sbjct: 154 DAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 213
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
G ++ G + + I +VDMY + G LE+A
Sbjct: 214 GQLGALESGRWVHSYIEN-NGIQFNVHVGTALVDMYSKCGSLEDA 257
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y G + ++ +F + W+ +I G A+ G QAL ++ M+ GV P+ TF
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIRE 205
+++ C ++ G L S ++ + Y ++D+Y R G + A+
Sbjct: 79 SSILKLCP----IEPGKALH---SQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDT 131
Query: 206 MP 207
MP
Sbjct: 132 MP 133
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VSWT +I G+ + +A+ +F +M + PN T+V VLSAC+ I AL
Sbjct: 211 MPMKSTVSWTALITGHVQDKQPIQALELFGKM-LLEGHRPNHITIVGVLSACADIGALDL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y ++ + + + +V NA+++MY K G + A VF + KD +W+T+IS
Sbjct: 270 GRAIHGY-GSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFT 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G GR+A++LF M+ +G+ P+ VTF++++SACSH GL+ +G LF M VY I P+
Sbjct: 329 VQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRL 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR GLLEEAEA I M +E + +W +LL+AC H ND + + +E++
Sbjct: 389 EHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIK 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + L+ N +A ++RW++A +R ++ + KK GCSWIEV+
Sbjct: 449 REPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVD 497
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 43/262 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D++S+T+++ + + +A+SVF + P+ V LSA +
Sbjct: 79 IPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGH-RPDGFAAVGALSASGGLGDQRI 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G VH I R L +V NA+++MY +CG A VF+ + KD
Sbjct: 138 GSVVHGLI-FRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+SW+ +I+G + QAL+LF M++ G P+ +T +
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVG 256
Query: 150 LISACSHGGLVDQGLILF----KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
++SAC+ G +D G + K+ +T IV ++DMY ++G + A + E
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNA-----LMDMYAKSGSIASAFSVFEE 311
Query: 206 MPIEAEWSVWGALLNACRIHRN 227
+ ++ ++ W ++++ + N
Sbjct: 312 VQMKDAFT-WTTMISSFTVQGN 332
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 31 EMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
E+ + N + ++L+ C +I L Q +H+ T + + Y +
Sbjct: 9 ELLALRRGGMNRSVCHHLLTQCKTIREL---QRIHAQALTHGLHPNQQSISCKIFRSYAE 65
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G A ++F+ + + D+IS+++++S +A+ +FS I +G PD +
Sbjct: 66 FGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGA 125
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYAC--VVDMYGRAGLLEEAEAFIR 204
+SA GGL DQ + S V+ ++ + ++ C +VDMY R G E A
Sbjct: 126 LSAS--GGLGDQ-----RIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFD 178
Query: 205 EMPIEAEWSVWGALL 219
M ++ E + WG++L
Sbjct: 179 RMLVKDEVT-WGSML 192
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 178/297 (59%), Gaps = 9/297 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI G A+ G C++A+ +F EM + + ++ LV LSAC+ + L
Sbjct: 125 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKL 183
Query: 61 GQYVHSYISTRYDLSVSNLV---GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G ++HSYI R L+ N++I+MY CG + A +VF + + ISW+++I+
Sbjct: 184 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 243
Query: 118 GLAMNGCGRQALQLFSLMIINGV---FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A G +AL +F M G PD +TFI ++ ACSH G VDQG F+ M+ +
Sbjct: 244 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKW 303
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
IVP+ +HY C+VD+ RAG L+EA I MP++ +VWGALL CRIH+N E+ +
Sbjct: 304 GIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHV 363
Query: 235 RQELV--NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
Q+L K + G L+SN +A A RW+D +R ++ +G++K G SW+++N
Sbjct: 364 AQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 420
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 34/185 (18%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY---- 67
MI G+++ + V ++ M + EAEPNE T ++ C+ L G+ VH
Sbjct: 1 MIRGHSQSETPHKLVELYNRMVEA-EAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVAN 59
Query: 68 -----------------ISTRYD-----------LSVSNLVG-NAVINMYVKCGDVGIAI 98
I+ YD + N+V N+++ YV+CGDV A
Sbjct: 60 GYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 119
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
++F+ + ++++SW+T+I+G A G +QAL LF M GV D V +A +SAC+ G
Sbjct: 120 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 179
Query: 159 LVDQG 163
+ G
Sbjct: 180 DLKLG 184
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 183/301 (60%), Gaps = 13/301 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-----------KTKEAEPNEATLVNVL 49
MP+R+VVSW+TM+ GY ++G E A +F +M K E + A +V++L
Sbjct: 570 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSIL 629
Query: 50 SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKD 108
+AC+ +LS G+ +H Y+ R +L S V NA+I+M+ KCG V A VF+ KD
Sbjct: 630 AACAESGSLSLGKRIHRYVRKR-NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKD 688
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
+SW+++I G AM+G G +AL+LF+ M G PD VT I ++SAC+H G VD+G F
Sbjct: 689 SVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFS 748
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
M Y I+PQ +HY C++D+ GR GL++EA I+ MP E +WG+LL+ACR+H+N
Sbjct: 749 NMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNV 808
Query: 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
E + EL + + G +A++SN +A A +W D K R +++ G +K G SW+E+
Sbjct: 809 EYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVEL 868
Query: 289 N 289
N
Sbjct: 869 N 869
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D TM+ YA G +A++ F M + + L+ LSA + ++
Sbjct: 413 PHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSF--TYSFLIKALSA----AGVAPV 466
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VHS++ + VGNA+I+ Y K G A +VF+ + +D++SW+T ++ +
Sbjct: 467 RAVHSHV-VKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR 525
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G A +LF M D V++ ++ + G V+ LF+ M +
Sbjct: 526 EGELAGARKLFDEMPEK----DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVS---- 577
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMP 207
++ +V Y + G LE A +MP
Sbjct: 578 -WSTMVSGYCKKGDLEMARVIFDKMP 602
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 104/262 (39%), Gaps = 58/262 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW T + G A +F EM P + T+
Sbjct: 508 MPERDVVSWNTAMAAMVREGELAGARKLFDEM-------PEKDTV--------------- 545
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
S+ N +++ Y K G+V A ++F + ++++SWST++SG
Sbjct: 546 -----SW--------------NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYC 586
Query: 121 MNGCGRQALQLFS------------LMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
G A +F +M V D +++++AC+ G + G + +
Sbjct: 587 KKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 646
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
+ + T ++DM+ + G + A+ ++ + W +++ +H +
Sbjct: 647 YVRK-RNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG 705
Query: 229 ----EMFDPIRQELVNKKGVSV 246
E+F ++Q+ N V++
Sbjct: 706 DKALELFAQMKQQGFNPDAVTM 727
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 194/292 (66%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D ++W MI GYA+ G EA+++F M+ + + N ++++VLSAC+ + AL
Sbjct: 208 MPEKDPIAWNAMISGYAQVGESREALNLFHLMQ-LEGVKVNGVSMISVLSACTQLGALDQ 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ HSYI R + ++ +G ++++Y KCGD+ A++VF + K++ +WS+ ++GLA
Sbjct: 267 GRWAHSYIE-RNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLA 325
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + L+LFSLM +GV P+ VTF++++ CS G VD+G F +M + I PQ
Sbjct: 326 MNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQL 385
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+Y RAG LE+A + I++MP++A +VW +LL+A R+++N E+ ++++
Sbjct: 386 DHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLE 445
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A +D W++ + +R ++ G++K+ GCS +EVN +
Sbjct: 446 LETSNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 497
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 170/284 (59%), Gaps = 2/284 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++VSW TMI + + G EE ++ F M + +P++AT + VL C I + Q
Sbjct: 701 KNLVSWNTMIVIHLQNGLAEEGLAYFN-MSRWVGLKPDQATFLAVLRVCEDIGVVRLSQG 759
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H I + + + A++++Y K G + + VF + D ++W+ +++ A +G
Sbjct: 760 IHGLI-MFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHG 818
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR A++ F LM+ G+ PD VTF L++ACSH GLV++G F+ MS Y I P+ HY
Sbjct: 819 YGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHY 878
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
+C+VD+ GR+GLL++A I+EMP+E VWGALL ACR++++ ++ + L +
Sbjct: 879 SCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEP 938
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++SN ++ + W+DA++IR+ +++ GL + +G S+IE
Sbjct: 939 RDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIE 982
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 102/213 (47%), Gaps = 14/213 (6%)
Query: 19 RGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS 77
RG+ + V M +++ PNE T ++++SAC G +H + L
Sbjct: 613 RGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEV 672
Query: 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
+V NA++N+Y K GD+ + ++F L+ K+++SW+T+I NG + L F++
Sbjct: 673 KVV-NALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRW 731
Query: 138 NGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192
G+ PD TF+A++ C G+V GLI+F + T ++D+Y +
Sbjct: 732 VGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNA------NTCITTALLDLYAK 785
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
G LE++ E+ + W A+L A H
Sbjct: 786 LGRLEDSSTVFLEI-TSPDSMAWTAMLAAYATH 817
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ +CGDV A ++F + KD I+W+ +ISG A G R+AL LF LM + GV
Sbjct: 187 AMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKV 246
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+ V+ I+++SAC+ G +DQG + +I + +VD+Y + G +++A
Sbjct: 247 NGVSMISVLSACTQLGALDQGRWAHSYIER-NKIKITVRLGTTLVDLYAKCGDMDKAMEV 305
Query: 203 IREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS 245
M E W + LN ++ E +F ++Q+ V V+
Sbjct: 306 FWGME-EKNVYTWSSALNGLAMNGFGEKCLKLFSLMKQDGVTPNAVT 351
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +V+WT M+ GY G AV F+ M+ T+ EP++ ++V VL AC+ + L
Sbjct: 211 MPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQ-TEGFEPDDVSIVAVLPACAQLGTLEL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y R+ + S + NA++ MY KCG + A+Q+F+ +A KD+ISWSTVI GLA
Sbjct: 270 GRWIYAYCK-RHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWSTVIGGLA 328
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A+ LF+ M G V P+ +TF+ L+SACS+ GLVD+GL F M+ VY + P
Sbjct: 329 AHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPG 388
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVD+ GR+G + A +R+MP+ A+ VWG+LL+ACR H + + + LV
Sbjct: 389 VEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSLLSACRSHGDVDTAVLAAERLV 448
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ VG +++N +A A RW D R IR ++K GCS IEV
Sbjct: 449 ELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEV 497
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 128/287 (44%), Gaps = 42/287 (14%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPN------EATLVNVLSACSSISALSFGQYVH 65
MI YA+ +AV+V+ M + + P+ T +L AC +AL G+ VH
Sbjct: 83 MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALELGKQVH 142
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+++ R S +V N++I MY + GD+ +A +VF+ + +D++SW+ +IS A G
Sbjct: 143 THV-VRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201
Query: 126 RQALQLFSLMI-------------------------------INGVFPDDVTFIALISAC 154
R+A LF+ M G PDDV+ +A++ AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EW 212
+ G ++ G ++ A + ++ T +++MY + G +++A M + W
Sbjct: 262 AQLGTLELGRWIY-AYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISW 320
Query: 213 S-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
S V G L R H +F + +E + V L + ++AG
Sbjct: 321 STVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAG 367
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV++WT MI YA+ + A +F +M + PNE T+V++LS C+ AL
Sbjct: 293 MKNKDVMTWTAMISAYAQANCIDYAFQLFVQM-RDNGVRPNELTMVSLLSLCAVNGALDM 351
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H+YI + + V ++ A+I+MY KCGD+ A ++F+ +D+ +W+ +++G
Sbjct: 352 GKWFHAYID-KQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LF+ M GV P+D+TFI + ACSH GLV +G LF+ M + +VP+
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EA I MP+ ++WGA+L AC+IH+N M + +EL+
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAARELLA 530
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G LMSN +A A+RW D +R ++ G+KK+ G S IEVN
Sbjct: 531 LEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVN 579
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 4/223 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R +VSWT MI GY EE +F M + + PN+ T+++++ +C + A+ G+
Sbjct: 194 QRSIVSWTAMIAGYIRCNDLEEGERLFVRMIE-ENVFPNDITMLSLIISCGFVGAVQLGK 252
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+YI R +S + A+++MY KCG++ A +F+ + KD+++W+ +IS A
Sbjct: 253 RLHAYI-LRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQA 311
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
C A QLF M NGV P+++T ++L+S C+ G +D G F A +
Sbjct: 312 NCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGK-WFHAYIDKQGVEVDVIL 370
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G + A+ E I+ + W ++ +H
Sbjct: 371 KTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMH 412
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 101/224 (45%), Gaps = 36/224 (16%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A++ + M K + E + + +VL ACS IS G+ +H + S + L V NA+
Sbjct: 93 ALNTYTYMRKL-DIEVDSFIIPSVLKACSQISVARMGKEIHGF-SVKNGLVSDVFVVNAL 150
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL--AMNGCGRQAL------------- 129
+ MY +CG + A +F+ ++ +D++SWST+I G ++++
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210
Query: 130 -------QLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIV 177
+LF MI VFP+D+T ++LI +C G V G IL +
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA 270
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMYG+ G + A A M + W A+++A
Sbjct: 271 ------TALVDMYGKCGEIRSARAIFDSMK-NKDVMTWTAMISA 307
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 184/294 (62%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQ-EMEKTKEAEPNEATLVNVLSACSSISALS 59
MP +++VSW+ MI YA+ +A+ +FQ M + + PN T+V+VL AC+S++AL
Sbjct: 240 MPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALE 299
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+Y+ R L + V N +I MY +CG++ +VF+ + +D+ISW+++IS
Sbjct: 300 HGKLVHAYV-LRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIY 358
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G++A+Q+F MI GV P +TFI ++ ACSH GLV++ ILF++M Y I P+
Sbjct: 359 GMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPR 418
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA I+ M + +VWG+LL +CRIH N E+ + L
Sbjct: 419 MEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLF 478
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+S+ +A + W D ++R ++ GL+K CSWIEV I+
Sbjct: 479 ELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIY 532
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 41 NEATLVNVLSACS----SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
N T VL AC SI L G+ +H++I R+ V ++++Y + G V
Sbjct: 174 NRFTYTYVLKACVVSELSICPLRKGKEIHAHI-LRHGYEGHVHVMTTLLDVYARFGYVSY 232
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISAC 154
A VF + K+++SWS +I+ A N +AL+LF +M++ P+ +T ++++ AC
Sbjct: 233 ASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQAC 292
Query: 155 S------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+ HG LV +L + + + ++ ++ MYGR G + + M
Sbjct: 293 ASLAALEHGKLV-HAYVLRRGLDSTLPVLNT------LITMYGRCGEISTGQRVFDYMKK 345
Query: 209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
S W +L++ +H + I + ++N +GVS
Sbjct: 346 RDVIS-WNSLISIYGMHGLGKKAIQIFENMIN-RGVS 380
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 17/228 (7%)
Query: 2 PKRDVVSWTT--MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
P +D+ S +I G ++AV + E P + T ++++C ++LS
Sbjct: 37 PTKDIKSNNNDDLIQSLCRGGNLKQAVQLL-----CCEPNPTKKTFELLINSCIEQNSLS 91
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH + L + +INMY G V A +VF+ K + W+ + L
Sbjct: 92 DGVDVHHRLVGS-GLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRAL 150
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC-----SHGGLVDQGLILFKAMSTVY 174
AM G L L+ M G+ + T+ ++ AC S L I + Y
Sbjct: 151 AMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGY 210
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
E ++D+Y R G + A + MP + W A++ AC
Sbjct: 211 E--GHVHVMTTLLDVYARFGYVSYASSVFGAMP-DKNIVSWSAMI-AC 254
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 119/280 (42%), Positives = 178/280 (63%), Gaps = 2/280 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT+MIGGYA+ G +EA+ +F EME PNE T+V VL AC+ + L
Sbjct: 205 MPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL-PNEVTVVAVLVACADMGNLVL 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + S R + V N +I+MYVKCG + A ++F+ + + ++SWS +I+GLA
Sbjct: 264 GRRIHDF-SNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL LF+ MI GV P+ VTFI ++ ACSH G+V++G F +M+ Y IVP+
Sbjct: 323 AHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRI 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++ RAGLL+EA FI MPI VWGALL C++H+N ++ + + L
Sbjct: 383 EHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSK 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
++ G + ++SN +A A RWED ++R +R G +K
Sbjct: 443 LDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEK 482
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 122/268 (45%), Gaps = 37/268 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W T + +AE +A+S+F + + + P+ T VL ACS + + G+ V
Sbjct: 77 EVTHWNTCLRSFAEGDSPADAISLFYRLREF-DISPDHYTCSFVLKACSRLLDVRNGKIV 135
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI-------------- 110
H Y+ + L + + N ++++Y CG++G+A +VF+ + +D+I
Sbjct: 136 HGYVE-KLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGD 194
Query: 111 -----------------SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
SW+++I G A G ++A+ LF M G+ P++VT +A++ A
Sbjct: 195 AEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVA 254
Query: 154 CSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
C+ G LV I + + YE + ++DMY + G LE+A M E
Sbjct: 255 CADMGNLVLGRRIHDFSNRSGYE--KNIRVCNTLIDMYVKCGCLEDACRIFDNME-ERTV 311
Query: 213 SVWGALLNACRIHRNDEMFDPIRQELVN 240
W A++ H E + +++N
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMIN 339
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTT+IGGYA+ E+AV VF+ M+ + E + L++VL+AC + A+
Sbjct: 170 MPERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQ-VEGIEADGVALLSVLAACGDLGAVDL 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + N++I+MY+KCG + A++VF + K +++W+T+I+G A
Sbjct: 229 GEWVHRFV-VRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFA 287
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G QA+++F M + P+ VTF+A++SACSH GL D G F M + Y I P+
Sbjct: 288 LHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRV 347
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA+ ++ MP++A ++WGALL A R H + + + L+
Sbjct: 348 EHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAAARTHGDAGLGEQALLHLIE 407
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN FA +RW D +K+R +R GL+ G S IEV+
Sbjct: 408 LEPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVD 456
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 13/188 (6%)
Query: 73 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
+++V ++V N +I YVK GD A ++F+ + ++++SW+TVI G A +A+++
Sbjct: 138 EMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEV 197
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDM 189
F M + G+ D V +++++AC G VD G + F + + +P ++DM
Sbjct: 198 FRRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMN---SIIDM 254
Query: 190 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
Y + G +E+A M E W L+ +H + EMF R E N +
Sbjct: 255 YMKCGCIEKAVEVFEGME-EKSVVTWTTLIAGFALHGLGLQAVEMF--CRMERENMAPNA 311
Query: 246 VGTFALMS 253
V A++S
Sbjct: 312 VTFLAILS 319
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 187/288 (64%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSW TMIGGY++ EA+ +F +M+K + +P++ T+ VL AC+ ++AL
Sbjct: 458 IPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQK--QFKPDDITMACVLPACAGLAALDK 515
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R S + V A+++MY KCG + +A +F+M+ KD+ISW+ +I+G
Sbjct: 516 GREIHGHILRRGYFSDLH-VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYG 574
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M I G+ PD+ +F A+++ACSH GL+++G F +M + P+
Sbjct: 575 MHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKL 634
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ R G L +A FI MPI+ + ++WG LL+ CRIH + ++ + + + +
Sbjct: 635 EHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE 694
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + +++N +A A++WE+ K+R +++ G K+ GCSWIEV
Sbjct: 695 LEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 119/217 (54%), Gaps = 8/217 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +VSWT++I Y G +A+ +F EM+ +K P+ T+ +++ AC+ S+L
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQ-SKGVRPDIYTVTSIVHACACSSSLDK 415
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHSY+ + + + V NA+INMY KCG V A VF+ + KD++SW+T+I G +
Sbjct: 416 GRDVHSYV-IKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 474
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL+LF L + PDD+T ++ AC+ +D+G + + +
Sbjct: 475 QNLLPNEALELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHI--LRRGYFSD 531
Query: 181 QHYAC-VVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
H AC +VDMY + GLL A+ +P + W+V
Sbjct: 532 LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 568
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + DVVSW +MI G GF + +F +M E + TLV+VL AC++I LS
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM-LILGVEVDLTTLVSVLVACANIGNLSL 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + S + N +++MY KCG++ A +VF + ++SW+++I+
Sbjct: 315 GRALHGF-GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYV 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
G A+ LF M GV PD T +++ AC+ +D+G ++ M +
Sbjct: 374 REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN-- 431
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+P T +++MY + G +EEA ++P++
Sbjct: 432 -LPVTN---ALINMYAKCGSVEEARLVFSKIPVK 461
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 104/202 (51%), Gaps = 8/202 (3%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W ++ YA+ G E+VS+F++M+K N T VL +++ + + VH
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVV-GNCYTFTCVLKCFAALGKVKECKRVH 218
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
Y+ + + V N++I Y K G V A +F+ L+ D++SW+++I+G +NG
Sbjct: 219 GYV-LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 277
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHY 183
L++F M+I GV D T ++++ AC++ G + G L F + E V +
Sbjct: 278 GNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSN-- 335
Query: 184 ACVVDMYGRAGLLEEA-EAFIR 204
++DMY + G L A E F++
Sbjct: 336 -TLLDMYSKCGNLNGATEVFVK 356
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 15/212 (7%)
Query: 21 FCE--EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
FCE + + + + K+K E + +VL C+ +L G+ VHS I + +SV
Sbjct: 71 FCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN-GISVDE 129
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
+G ++ MYV CGD+ ++F+ + + W+ ++S A G R+++ LF M
Sbjct: 130 ALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKL 189
Query: 139 GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
GV + TF ++ + G V + G +L + +V ++ Y +
Sbjct: 190 GVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS------LIAAYFKF 243
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
G +E A E+ E + W +++N C ++
Sbjct: 244 GGVESAHNLFDELS-EPDVVSWNSMINGCVVN 274
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 183/288 (63%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP DVVSWTT+I A+ EAV +F+ M +E PN L +L ++ A
Sbjct: 510 MPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHEREL-PNPPILTILLGLSGNLGAPQL 568
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ I+ + + +V NA+++MY KC +++VF+ + +D+ +W+T+I+G A
Sbjct: 569 GQQIHT-IAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYA 626
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++++ LM+ GV P++VTF+ L+ ACSH GLVD+G FK+MS+ Y + P
Sbjct: 627 QHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLL 686
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++ AE FI +MPIE + +W ALL AC+IH+N E+ ++L +
Sbjct: 687 EHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFS 746
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + ++SN ++ W++ K+R ++ G+ K GCSW+++
Sbjct: 747 IEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQI 794
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 48/220 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ +SW MI GYA G E+A+ Q + + K P+ ++L + ACS+I AL
Sbjct: 378 MPFRNTISWAGMIAGYARNGRSEQALVSLQALHR-KGMLPSLSSLTSSFFACSNIEALET 436
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G+ VHS ++ + ++ V NA+I +Y K +G Q+F+ + KD
Sbjct: 437 GKQVHS-LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALV 495
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
++SW+T+IS A G +A+++F M+ P+
Sbjct: 496 QNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTI 555
Query: 150 LISACSHGGL---------------VDQGLILFKAMSTVY 174
L+ + G +D GL++ A+ ++Y
Sbjct: 556 LLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMY 595
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 119/278 (42%), Gaps = 49/278 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE--------------------- 39
MP RDV SW TM+ GY EEA ++F+ M +
Sbjct: 152 MPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMF 211
Query: 40 ---------PNEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYV 89
P + LV+VLSA + + +H + T ++ V +VG A++N Y
Sbjct: 212 RTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDV--VVGTAILNGYT 269
Query: 90 KCGDVGI---AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
K DV + A++ F +A ++ +WST+I+ L+ G A ++ + V +
Sbjct: 270 K--DVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV----PS 323
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++++ + G +D ILF ++E P + ++ Y + +++EAE M
Sbjct: 324 RTSMLTGLARYGRIDDAKILF---DQIHE--PNVVSWNAMITGYMQNEMVDEAEDLFNRM 378
Query: 207 PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
P S G + R R+++ + + +++KG+
Sbjct: 379 PFRNTISWAGMIAGYARNGRSEQAL--VSLQALHRKGM 414
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 28/229 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+++W +MI Y G + S+ + N T +LS + +
Sbjct: 59 MPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGG-----NLRTGTILLSGYARAGRVRD 113
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + R + + NA++ YV+ GD+ +A ++F+ + +D+ SW+T+++G
Sbjct: 114 ARRVFDGMGVR-----NTVAWNAMVTCYVQNGDITLARKLFDAMPSRDVSSWNTMLTGYC 168
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISAC----SHGGLVDQGLILFKAMSTVYE 175
+ +A LF M NG V++ +IS HG D +F+ M
Sbjct: 169 HSQLMEEARNLFERMPERNG-----VSWTVMISGYVLIEQHGRAWD----MFRTM-LCEG 218
Query: 176 IVPQTQHYACV---VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ P+ + V V G+ G+LE + + E + V A+LN
Sbjct: 219 MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNG 267
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 122/273 (44%), Gaps = 25/273 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI--SAL 58
M R+ +W+T+I ++ G ++A +V+Q ++ P+ +++ L+ I + +
Sbjct: 285 MAARNEYTWSTIIAALSQAGRIDDAFAVYQR--DPLKSVPSRTSMLTGLARYGRIDDAKI 342
Query: 59 SFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
F Q +H N+V NA+I Y++ V A +FN + +++ ISW+ +I+
Sbjct: 343 LFDQ-IHE----------PNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIA 391
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G A NG QAL + G+ P + + ACS+ ++ G + S +
Sbjct: 392 GYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGK---QVHSLAVKAG 448
Query: 178 PQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
Q Y C ++ +YG+ + M ++ S + + ++A + +FD R
Sbjct: 449 CQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS-YNSFMSAL---VQNNLFDEAR 504
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
N V ++ + + A AD+ +A +I
Sbjct: 505 DVFNNMPSPDVVSWTTIISACAQADQGNEAVEI 537
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 184/293 (62%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D V W MI GY + G EA+ +F+ M + EP+E T+V VLSA + + +
Sbjct: 479 LPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSG-VEPDEVTVVLVLSAVAQLGTVES 537
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY+ + +S VG A+I+MY KCG +G A+ VF+ + KD++ W+ +I+G A
Sbjct: 538 GKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYA 597
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G R+AL++F G++P D+TFI L++ACSH G+V++G F++M Y I P+
Sbjct: 598 MHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKI 657
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL++EA ++ M I + +W +LL ACR+H+N + I LV
Sbjct: 658 EHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVA 717
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
K + G + L+SN +A W + ++R ++ G++K+ GCS IE++ ++
Sbjct: 718 KGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVY 770
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 42/267 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ +T+ I ++ RG A+++ +M + P TL L AC +S G+ +H
Sbjct: 355 IFYTSAIHAHSSRGHRLPALALLSDM-LAQGLLPTAHTLSASLPACRGLSP---GRALHG 410
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGD--------------------------------V 94
Y + + L+ + V A++ MY + GD +
Sbjct: 411 Y-AFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGAL 469
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A +F+ L KD + W+ +I G +G +AL+LF M+ +GV PD+VT + ++SA
Sbjct: 470 DDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAV 529
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+ G V+ G L + + + ++DMY + G L +A + + + V
Sbjct: 530 AQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIG-DKDIVV 588
Query: 215 WGALLNACRIHRND----EMFDPIRQE 237
W A++N +H + EMF R++
Sbjct: 589 WNAMINGYAMHGDSRKALEMFVQSREQ 615
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 177/293 (60%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV SW+ +I +A G E +SVF EM + P E+ LV+VLSAC+ + AL
Sbjct: 146 MDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDL 205
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H + R ++ +V ++I+MYVKCG + + +F + K+ +S+S +I+GLA
Sbjct: 206 GRCTHVTL-LRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLA 264
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +ALQ+FS M+ G+ PDDV ++ ++SAC+H GLVD+GL F M + I P
Sbjct: 265 MHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTI 324
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+V + GRAG+L +A IR MPI+ VW LL+AC+ H N E+ + + L
Sbjct: 325 QHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGE 384
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + ++SN +A A RWED KIR E+ R G + G S ++V I+
Sbjct: 385 LNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIY 437
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 12/203 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ TMI GY E A+ ++ EM + + E + T + AC+S+ ++ G +H YI
Sbjct: 53 FNTMIRGYVNVMNMENALFLYYEMLE-RGVESDNFTYPALFKACASLRSIEEGMQIHGYI 111
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R L V N++INMY KCG + ++ VF + +D+ SWS +I+ A G +
Sbjct: 112 FKR-GLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSEC 170
Query: 129 LQLFSLMIING-VFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHY 183
L +F M G P++ ++++SAC+H G +D G + L + + + IV +
Sbjct: 171 LSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTS--- 227
Query: 184 ACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G +E+ + + M
Sbjct: 228 --LIDMYVKCGCIEKGLSLFQRM 248
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 186/289 (64%), Gaps = 5/289 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT MI + G EEA+S+F+EM+ + EP+ T+V +L+ C+++ AL G+
Sbjct: 240 EKDLIMWTAMINACVQHGCFEEALSLFREMQ-MQRVEPDRFTIVTLLTCCANLGALDQGE 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H + R + V ++G A+I+MY KCG V +++VF + +D +W+++I GLA N
Sbjct: 299 WIHQFAVDR-KMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + V PD +TFI ++SAC HGGLVD+G F AM VY I P+ +H
Sbjct: 358 GQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRIEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ GRAGLL+EAE IR++ I + ++GALL AC+ N EM + + + + +
Sbjct: 418 YSCLVNLLGRAGLLDEAEKLIRDIQINKDAMPLFGALLTACKAQGNVEMSERLTKR-IGE 476
Query: 242 KGVSVGTF-ALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+G + LMSN +A A RWEDA ++R ++ +KK GCS IEV
Sbjct: 477 QGYQIPDVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVK 525
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 115/237 (48%), Gaps = 35/237 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +V W MI Y G A+++ +EME++ P++ TLV ++ CS LS
Sbjct: 107 MPHRALVVWNMMIRCYVRCGRYTAAIALAEEMERSG-LTPDKVTLVTSVTVCSRAGDLSL 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+ + S+ V NA+++MY+K G + A+++F + +++ISW+ ++SG A
Sbjct: 166 GRRIHAYMDGVFGFSLP--VANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYA 223
Query: 121 M-------------------------------NGCGRQALQLFSLMIINGVFPDDVTFIA 149
+GC +AL LF M + V PD T +
Sbjct: 224 FAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVT 283
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
L++ C++ G +DQG + + V A ++DMY + G ++++ +M
Sbjct: 284 LLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTA-LIDMYAKCGHVKKSMEVFEQM 339
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 9/208 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +I A RG ++V+ ++ + + + T VL A +
Sbjct: 9 MPLRDC---NLLIRTLARRGSFARVMAVYYDL-RGRGLVADSFTYPFVLRAIGVLKLSVE 64
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ + + +++++MY G +A ++F+ + ++ ++ W+ +I
Sbjct: 65 GRKAHA-AAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYV 123
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQ 179
G A+ L M +G+ PD VT + ++ CS G + G + M V+ +P
Sbjct: 124 RCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPV 183
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMP 207
++DMY + G LEEA +MP
Sbjct: 184 AN---ALLDMYMKNGCLEEAVKLFEQMP 208
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M RD +WT++I G A G A+ +F++ME++K +P+ T + VLSAC
Sbjct: 339 MQGRDTTAWTSIICGLATNGQAGRALELFEDMERSK-VKPDSITFIGVLSAC 389
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSW+ MI GYAE EA+++F +M+++ +P+E T+++V+SAC+++ AL
Sbjct: 102 MPAKDVVSWSAMIAGYAESSKPMEALNLFHDMQRSG-VKPDEITMLSVISACANVGALEK 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HS++ + +GNA+I+M+ KCG + +A+ VFN + K++++W+++I+ A
Sbjct: 161 ARCIHSFVENHSMCKILP-IGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASA 219
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G GR AL LF M G+ P+ VTF+ L+ AC H GLV++G +LFK M Y I P
Sbjct: 220 MHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMH 279
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRA LL +A I+ M + +WG+LL ACR+H + E+ ++++
Sbjct: 280 EHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGTFAAKKILE 339
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G L+SN +A W D ++R + G KK GCSW+E+N S+
Sbjct: 340 LDPNHGGAQVLLSNIYAEYGNWNDVKEVRGVMEVQGTWKKKGCSWMELNGSV 391
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 115/249 (46%), Gaps = 42/249 (16%)
Query: 34 KTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 93
K P++ + VLS C+ L FG+ +HSY+ D + V A++NMY C D
Sbjct: 2 KRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVS-DTLIDAQVSCALMNMYASCAD 60
Query: 94 -------------------------------VGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V IA +FN + KD++SWS +I+G A +
Sbjct: 61 MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQT 180
+AL LF M +GV PD++T +++ISAC++ G +++ + F ++ +I+P
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIG 180
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQ 236
++DM+ + G L A MP + W +++ A +H + +F+ ++
Sbjct: 181 N---ALIDMFSKCGSLTLALDVFNAMP-QKNVVTWTSIITASAMHGDGRSALTLFENMKS 236
Query: 237 ELVNKKGVS 245
E + GV+
Sbjct: 237 EGIQPNGVT 245
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD + W +++ G A+ G EEA+ +F+ M +T P T +++ C ++++L F
Sbjct: 232 LPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTG-VRPVPVTFSSLIPVCGNLASLRF 290
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+ R + + +++I+MY KCG++ IA +F+ + D++SW+ +I G A
Sbjct: 291 GKQLHAYV-IRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMIMGYA 349
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+AL LF M + P+ +TF+A+++ACSH GLVD+G FK+MS Y IVP
Sbjct: 350 LHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGIVPTL 409
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H A + D+ GRAG L+EA FI +M I+ SVW LL ACR+H+N + + + ++++
Sbjct: 410 EHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIME 469
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S+G+ ++SN ++ + RW +A +R +R+ G+KK CSWIEV
Sbjct: 470 LEPRSIGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVK 518
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW T++ G AE G EA+ + ++M + + P+ TL +VL + + +
Sbjct: 131 MIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWR-EGFRPDSFTLSSVLPIFAECADVKR 189
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + + R VG+++I+MY C +++VF+ L +D I W++V++G A
Sbjct: 190 GSEVHGF-AVRNGFDNDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDPILWNSVLAGCA 248
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
NG +AL +F M+ GV P VTF +LI C
Sbjct: 249 QNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVC 282
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSF 60
P +SW I A +G +A+S+F M + A+L L +C+++ +
Sbjct: 10 PWPPPLSWAHQIRMAAAQGHFRDAISLFLRMRACAAPRSSVPASLPAALKSCAALGLSAL 69
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVK-------------CGDVGIAI------QVF 101
G +H+ ++ R NA++N+Y K G G + +VF
Sbjct: 70 GASLHA-LAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTSVGGTGSSTALESVRKVF 128
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+ + +D++SW+T++ G A G +AL L M G PD T +++
Sbjct: 129 DEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDSFTLSSVL 178
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 186/288 (64%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSW TMIGGY++ EA+ +F +M+K + +P++ T+ VL AC+ ++AL
Sbjct: 733 IPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQK--QFKPDDITMACVLPACAGLAALDK 790
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R S + V A+++MY KCG + +A +F+M+ KD+ISW+ +I+G
Sbjct: 791 GREIHGHILRRGYFSDLH-VACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYG 849
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M I G+ PD+ +F +++ACSH GL+++G F +M + P+
Sbjct: 850 MHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKL 909
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ R G L +A FI MPI+ + ++WG LL+ CRIH + ++ + + + +
Sbjct: 910 EHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE 969
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + +++N +A A++WE+ K+R +++ G K+ GCSWIEV
Sbjct: 970 LEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 118/217 (54%), Gaps = 8/217 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +VSWT+ I Y G +A+ +F EM+ +K P+ T+ +++ AC+ S+L
Sbjct: 632 MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQ-SKGVRPDIYTVTSIVHACACSSSLDK 690
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHSY+ + + + V NA+INMY KCG V A VF+ + KD++SW+T+I G +
Sbjct: 691 GRDVHSYV-IKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYS 749
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL+LF L + PDD+T ++ AC+ +D+G + + +
Sbjct: 750 QNSLPNEALELF-LDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHI--LRRGYFSD 806
Query: 181 QHYAC-VVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
H AC +VDMY + GLL A+ +P + W+V
Sbjct: 807 LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 843
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 108/214 (50%), Gaps = 13/214 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + DVVSW +MI G GF + +F +M E + TLV+VL A ++I LS
Sbjct: 531 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQM-LILGVEVDLTTLVSVLVAWANIGNLSL 589
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + S + N +++MY KCG++ A +VF + ++SW++ I+
Sbjct: 590 GRALHGF-GVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYV 648
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
G A+ LF M GV PD T +++ AC+ +D+G ++ M +
Sbjct: 649 REGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSN-- 706
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+P T +++MY + G +EEA ++P++
Sbjct: 707 -LPVTN---ALINMYAKCGSVEEARLVFSKIPVK 736
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W ++ YA+ G E+VS+F++M+K N T VL +++ + + VH
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVV-GNCYTFTCVLKCFAALGKVKECKRVH 493
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
Y+ + + V N++I Y K G V A +F+ L+ D++SW+++I+G +NG
Sbjct: 494 GYV-LKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFS 552
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHY 183
L++F M+I GV D T ++++ A ++ G + G L F + E V +
Sbjct: 553 GNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN-- 610
Query: 184 ACVVDMYGRAGLLEEA-EAFIR 204
++DMY + G L A E F++
Sbjct: 611 -TLLDMYSKCGNLNGATEVFVK 631
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 15/212 (7%)
Query: 21 FCE--EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
FCE + + + + K+K E + +VL C+ +L G+ VHS I + +S+
Sbjct: 346 FCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISN-GISIDE 404
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
+G ++ MYV CGD+ ++F+ + + W+ ++S A G R+++ LF M
Sbjct: 405 ALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKL 464
Query: 139 GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
GV + TF ++ + G V + G +L + +V ++ Y +
Sbjct: 465 GVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS------LIAAYFKF 518
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
G +E A E+ E + W +++N C ++
Sbjct: 519 GGVESAHNLFDELS-EPDVVSWNSMINGCVVN 549
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT MI GY +E +++F++M+ + +P+E T+V++L+AC+ + AL
Sbjct: 332 MPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMS-NVKPDEFTMVSILTACAHLGALEL 390
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ +YI + + +GNA+I+MY KCG+V A ++FN + KD +W+ +I GLA
Sbjct: 391 GEWAKTYID-KNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLA 449
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G +AL +FS M+ V PD++T+I ++ AC+H GLV +G F M+ + I P
Sbjct: 450 NNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNL 509
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAG L+EA I MP++ VWG+LL ACR+H+N ++ + E++
Sbjct: 510 THYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE 569
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+ N +A +W++ + +R + G+KK GCS +E+N ++
Sbjct: 570 LEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVY 622
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 124/248 (50%), Gaps = 36/248 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFGQY 63
+VV+W ++ GY EE+ +F EMEK E PN TLV +LSACS + L G+
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+++ + + ++ NA+I+M+ CG++ A VF+ + +D+ISW+++++G A N
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA-NT 319
Query: 124 CG--------------------------------RQALQLFSLMIINGVFPDDVTFIALI 151
C ++ L LF M ++ V PD+ T ++++
Sbjct: 320 CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSIL 379
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+H G ++ G K +I T ++DMY + G +E+A+ EM + +
Sbjct: 380 TACAHLGALELGEWA-KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDK 438
Query: 212 WSVWGALL 219
++ W A++
Sbjct: 439 FT-WTAMI 445
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 106/242 (43%), Gaps = 6/242 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ V W TMI GY+ E VS+++ M +P+ T +L + AL +
Sbjct: 95 IPQPSVFIWNTMIKGYSRINCSESGVSLYKLM-LVHNIKPDGFTFPFLLKGFTKDMALKY 153
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + ++ L + V I+++ CG V A ++F+M ++++W+ V+SG
Sbjct: 154 GKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYN 213
Query: 121 MNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
++ +LF M V P+ VT + ++SACS + G ++ + P
Sbjct: 214 RFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEP 273
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEMFDPIR 235
++DM+ G ++ A EM W S+ N CRI + FD +
Sbjct: 274 NLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMP 333
Query: 236 QE 237
+
Sbjct: 334 ER 335
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
GDV A +VF+ + + W+T+I G + C + L+ LM+++ + PD TF L+
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 152 SACSHGGLVDQGLILF 167
+ + G +L
Sbjct: 143 KGFTKDMALKYGKVLL 158
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VSWT +I G+ + +A+ +F +M + PN T+V VLSAC+ I AL
Sbjct: 211 MPMKSTVSWTALITGHVQDKQPIQALELFGKM-LLEGHRPNHITIVGVLSACADIGALDL 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y ++ + + + +V NA+++MY K G + A VF + KD +W+T+IS
Sbjct: 270 GRAIHGY-GSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFT 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G GR+A++LF M+ +G+ P+ VTF++++SACSH GL+ +G LF M VY I P+
Sbjct: 329 VQGNGRKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRL 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR GLLEEAEA I M +E + +W +LL+AC H ND + + E++
Sbjct: 389 EHYGCMVDLLGRGGLLEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIK 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + L+ N +A ++RW++A +R ++ + KK GCSWIEV+
Sbjct: 449 REPGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVD 497
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 117/262 (44%), Gaps = 43/262 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D++S+T+++ + + +A+SVF + P+ V LSA +
Sbjct: 79 IPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGH-RPDGFAAVGALSASGGLGDQRI 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G VH I R L +V NA+++MY +CG A VF+ + KD
Sbjct: 138 GSVVHGLI-FRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYM 196
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+SW+ +I+G + QAL+LF M++ G P+ +T +
Sbjct: 197 KCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVG 256
Query: 150 LISACSHGGLVDQGLILF----KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
++SAC+ G +D G + K+ +T IV ++DMY ++G + A + E
Sbjct: 257 VLSACADIGALDLGRAIHGYGSKSNATTNIIVTNA-----LMDMYAKSGSIASAFSVFEE 311
Query: 206 MPIEAEWSVWGALLNACRIHRN 227
+ ++ ++ W ++++ + N
Sbjct: 312 VQMKDAFT-WTTMISSFTVQGN 332
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 31 EMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
E+ + N + ++L+ C +I L Q +H+ T + + Y +
Sbjct: 9 ELLALRRGGMNRSVCHHLLTQCKTIREL---QRIHAQALTHGLHPNQQSISCKIFRSYAE 65
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G A ++F+ + + D+IS+++++S +A+ +FS I +G PD +
Sbjct: 66 FGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAAVGA 125
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYAC--VVDMYGRAGLLEEAEAFIR 204
+SA GGL DQ + S V+ ++ + ++ C +VDMY R G E A
Sbjct: 126 LSAS--GGLGDQ-----RIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFD 178
Query: 205 EMPIEAEWSVWGALL 219
M ++ E + WG++L
Sbjct: 179 RMLVKDEVT-WGSML 192
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 178/297 (59%), Gaps = 9/297 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI G A+ G C++A+ +F EM + + ++ LV LSAC+ + L
Sbjct: 227 MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKL 285
Query: 61 GQYVHSYISTRYDLSVSNLV---GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G ++HSYI R L+ N++I+MY CG + A +VF + + ISW+++I+
Sbjct: 286 GTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMIT 345
Query: 118 GLAMNGCGRQALQLFSLMIINGV---FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A G +AL +F M G PD +TFI ++ ACSH G VDQG F+ M+ +
Sbjct: 346 GFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKW 405
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
IVP+ +HY C+VD+ RAG L+EA MP++ +VWGALL CRIH+N E+ +
Sbjct: 406 GIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAELASHV 465
Query: 235 RQELV--NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
Q+LV K + G L+SN +A A RW+D +R ++ +G++K G SW+++N
Sbjct: 466 AQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQIN 522
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 34/188 (18%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY- 67
W MI G+++ + V ++ M + EAEPNE T ++ C+ L G+ VH
Sbjct: 100 WNQMIRGHSQSETPHKLVELYNRMVEA-EAEPNEFTYSFLIGGCARSXLLREGEQVHGRV 158
Query: 68 --------------------ISTRYD-----------LSVSNLVG-NAVINMYVKCGDVG 95
I+ YD + N+V N+++ YV+CGDV
Sbjct: 159 VANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVD 218
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F+ + ++++SW+T+I+G A G +QAL LF M GV D V +A +SAC+
Sbjct: 219 GARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACA 278
Query: 156 HGGLVDQG 163
G + G
Sbjct: 279 ELGDLKLG 286
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
++ +L C +I L + +H+ I S N + +++ Y+ G++ A +V
Sbjct: 33 DDGSLEETHITCDTIKKL---KQIHTQIIVN-GFSQKNFLLVKLLSFYITSGNLLNAHKV 88
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + W+ +I G + + + ++L++ M+ P++ T+ LI C+ L+
Sbjct: 89 FERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLL 148
Query: 161 DQG 163
+G
Sbjct: 149 REG 151
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 178/289 (61%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V+SW+ +IGG+A G E A+ +F+ M++ + PN TL VLSAC+ A+ G+ V
Sbjct: 315 NVMSWSAVIGGFASSGDNERALELFRRMQQ-QWLSPNVVTLATVLSACTEQLAVRLGREV 373
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + R + +LV N +INMY KCG V A VF+ + +D++SW+++++G M+G
Sbjct: 374 HAD-AIRSMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGL 432
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
AL +F+ M V PD VTF+A++SACSH G V +G LF M ++I P +HY
Sbjct: 433 CDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYT 492
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ GRAGLL+EA FI MP+ A+ VWGALLN+CRIH + M + + + V
Sbjct: 493 CMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVV 552
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L++N +A W+D+ ++R R GL+K G SW+EV +F
Sbjct: 553 TTGNHTLITNLYAACGMWDDSKRVRVMTREAGLRKNPGQSWVEVKNKVF 601
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 5/170 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS--ALSFGQ 62
D V+WTT++ +A G + +F +M ++ E N ++ LSAC AL+ G+
Sbjct: 174 DAVTWTTLLSAHARCGKHPVVLELFGDMHRSG-CEGNAESVAVALSACPYAGDLALAKGR 232
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y + + V N+++ MY K G + A +VF ++ ++W+ +I+ A
Sbjct: 233 AIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTVTWNALITSYAAA 292
Query: 123 GCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +AL + M G V P+ +++ A+I + G ++ L LF+ M
Sbjct: 293 GMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFRRM 342
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW +M+ GY G C++A++VF +M + K +P+ T V VLSACS +S
Sbjct: 412 MKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAK-VDPDGVTFVAVLSACSHAGRVSE 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ + + + +S S ++++ + G + A + + D+ W +++
Sbjct: 471 GRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLNSC 530
Query: 120 AMNG 123
++G
Sbjct: 531 RIHG 534
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 100/259 (38%), Gaps = 45/259 (17%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS------- 54
P V W ++ + R + A+++++ M PN TL L A +S
Sbjct: 36 PTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATSPIASAIH 95
Query: 55 ISALSFGQYVHSYISTR-----------------YDLSVSN---LVGNAVINMYVKCGDV 94
AL G + H ++ + +D S + N +I+ Y C D
Sbjct: 96 AHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDP 155
Query: 95 GIAIQVFNMLA-----YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
A+ F +A D ++W+T++S A G L+LF M +G + +
Sbjct: 156 NNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAV 215
Query: 150 LISACSHGGLVD-------QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+SAC + G + G + K + Y V + +V MYG+ G +++A
Sbjct: 216 ALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNS-----LVCMYGKLGKMDDAREV 270
Query: 203 IREMPIEAEWSVWGALLNA 221
RE E W AL+ +
Sbjct: 271 FREAG-ERNTVTWNALITS 288
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++V+SWT+MI G+ G +EA+ + Q+M +P++ TL LSAC+ + AL
Sbjct: 203 MPEKNVISWTSMIVGFVRTGMHKEALCLLQQM-LVAGIKPDKITLSCSLSACAGLGALEQ 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI + + + ++G A+I+MYVKCG++ A+ VF+ L K + +W+ +I G A
Sbjct: 262 GKWIHTYIG-KNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL F+ M G+ P TF A+++ACSH GLV++G LF++MST Y + P
Sbjct: 321 VHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVM 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA+ F+ MPI+ ++WG+LLNAC +H++ E+ I + L+
Sbjct: 381 EHYGCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIE 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +++ A A W++A+++R I+ GL GCS I +N
Sbjct: 441 LDPEHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCSTITLN 489
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 133/280 (47%), Gaps = 40/280 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQY 63
+ V W TMI Y+ EEA+ ++ +M + P+ A T +L ACS++SAL+
Sbjct: 75 NTVMWNTMIRAYSNSNDPEEALLLYHQM--LHHSIPHNAYTFPFLLKACSALSALAETHQ 132
Query: 64 VHSYISTR----------------------------YDLSVS-NLVG-NAVINMYVKCGD 93
+H I R +DL S ++V N +I+ Y+KCG+
Sbjct: 133 IHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGN 192
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
V +A ++F + K++ISW+++I G G ++AL L M++ G+ PD +T +SA
Sbjct: 193 VEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSA 252
Query: 154 CSHGGLVDQGLILFKAM-STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
C+ G ++QG + + +I P ++DMY + G +++A ++ + +
Sbjct: 253 CAGLGALEQGKWIHTYIGKNKIKIDPVLG--CALIDMYVKCGEMKKALLVFSKLEKKCVY 310
Query: 213 SVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFAL 251
+ W A++ +H + E D Q + K G+ +F
Sbjct: 311 T-WTAIIGGFAVHGKGSEALDWFTQ--MQKAGIKPTSFTF 347
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 178/288 (61%), Gaps = 1/288 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+++ V W+ MI GY++ +E++ +F EM + + P E TLV+VLSAC ++ L+ G
Sbjct: 451 PRKNAVCWSAMIAGYSQNNKPKESLKLFHEMME-RGVVPIEHTLVSVLSACGQLTCLNLG 509
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++H Y + +S + NA+++MY KCG + A +VF+ + +++ISW+T+I+G A
Sbjct: 510 DWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAA 569
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +QA+ +F M G P+++TF++L++ACSHGGL+ +G F M Y I P+
Sbjct: 570 NGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERG 629
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GR GLLEEA I MP++ + WGALLNACR+H N E+ L+
Sbjct: 630 HYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRL 689
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L++NT A +W D ++R ++ G+KK G S IE++
Sbjct: 690 DPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEID 737
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 118/236 (50%), Gaps = 35/236 (14%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WTTMI GYA EEA+ VF E+ EPNE TL+ V+SACS + L G+
Sbjct: 321 KDVVTWTTMIDGYAAHDCSEEAMEVF-ELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKR 379
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYV-------------------------------KCG 92
VH + + ++ S + NA+++MYV KCG
Sbjct: 380 VHEKVEEK-NMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCG 438
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D+ A + F+ K+ + WS +I+G + N +++L+LF M+ GV P + T ++++S
Sbjct: 439 DLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLS 498
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMP 207
AC ++ G + + V +I+P + +VDMY + G ++ A MP
Sbjct: 499 ACGQLTCLNLGDWIHQYF-VVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP 553
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 6/214 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TMI GY A S F M + + E + + V L AC + G+ V+ +
Sbjct: 225 WNTMIRGYQNARKPIFAFSFFVYMFQLR-VEMDSRSFVFALKACQQFETVFEGESVYCVV 283
Query: 69 -STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+D + LV N +I+ Y + G + A QVF+ + KD+++W+T+I G A + C +
Sbjct: 284 WKMGFDCEL--LVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEE 341
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
A+++F LM+++ V P++VT IA++SACS G ++ G + + + + H A ++
Sbjct: 342 AMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNA-LL 400
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
DMY + L +A M + +S W +++N
Sbjct: 401 DMYVKCDCLVDARELFDRMATKDVYS-WTSMVNG 433
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+++SW TMI GYA G ++A++VF +M + EPN T V++L+ACS +S
Sbjct: 552 MPERNLISWNTMIAGYAANGRAKQAINVFDQM-RNMGFEPNNITFVSLLTACSHGGLISE 610
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM----ISWSTVI 116
G+ + +Y + ++++ G G+ + + ++A M +W ++
Sbjct: 611 GREYFDNMERKYGIKPERGHYACMVDLL---GRTGLLEEAYKLIANMPMQPCEAAWGALL 667
Query: 117 SGLAMNG 123
+ M+G
Sbjct: 668 NACRMHG 674
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 186/288 (64%), Gaps = 8/288 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+W +MI GYA+ G A+ +F+EM K+ P+E T+V+V+SAC + AL
Sbjct: 353 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 412
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +V +++ + LS+S NA+I MY +CG + A +VF +A +D++S++T+ISG
Sbjct: 413 GNWVVRFLTENQIKLSISG--HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGF 470
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ L S M G+ PD VTFI +++ACSH GL+++G +F+++ P
Sbjct: 471 AAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PA 525
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GR G LE+A+ + MP+E V+G+LLNA RIH+ E+ + +L
Sbjct: 526 IDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLF 585
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A A RW+D +IR+ +++ G+KK TG SW+E
Sbjct: 586 ELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 633
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 125/243 (51%), Gaps = 44/243 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS---- 56
MP+R VVSW M+ GYA+ G EE + +F EM EP+E T V V+SACSS
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAG-IEPDETTWVTVISACSSRGDPCL 278
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AY--------- 106
A S + +H + + ++ V A+++MY KCG +G A ++F+ L AY
Sbjct: 279 AASLVRTLH-----QKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAM 333
Query: 107 ----------------------KDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPD 143
+++++W+++I+G A NG A++LF MI + PD
Sbjct: 334 ISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPD 393
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
+VT +++ISAC H G ++ G + + + T +I + ++ MY R G +E+A+
Sbjct: 394 EVTMVSVISACGHLGALELGNWVVRFL-TENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 452
Query: 204 REM 206
+EM
Sbjct: 453 QEM 455
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ Y K D+ A + F+ + + ++SW+ ++SG A NG + L+LF M+ G+ P
Sbjct: 199 AMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEP 258
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV-----DMYGRAGLLE 197
D+ T++ +ISACS G D L A S V + + C V DMY + G +
Sbjct: 259 DETTWVTVISACSSRG--DPCL----AASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIG 312
Query: 198 EAEAFIREMPIEAEWSVWGALLNA 221
A E+ W A+++A
Sbjct: 313 AARRIFDELGAYRNSVTWNAMISA 336
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 182/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + ++A+ +F+ M + +PN +TL +VL CS++SAL F
Sbjct: 249 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 308
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + LS + VG ++++MY KCGD+ A ++F + +D+++W+ +ISG A
Sbjct: 309 GKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA 367
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++A+ LF M GV P+ +TF+A+++AC H GL D G+ F+ M +Y I P+
Sbjct: 368 QHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRV 427
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAG LE A IR MP E S +G LL ACR+++N E + +L+
Sbjct: 428 DHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 487
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K S G + ++N +AGA++W+D +++R ++ + K G SWIE+
Sbjct: 488 KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIK 536
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 22/253 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW TM+ G ++ G EEA +VF M N + ++S + +S
Sbjct: 155 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR-----NSVSWNAMVSGFACSRDMSA 209
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + D ++ A+++ Y+ G+V AI+ F + ++++SW+ V++G
Sbjct: 210 AEEWFRNAPEKGDA----VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 265
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N AL+LF M+ V P+ T +++ CS+ + G K + +P
Sbjct: 266 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG----KQIHQWCMKLPL 321
Query: 180 TQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 232
+++ +V MY + G L A EM + W A+++ H + + +F+
Sbjct: 322 SRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFE 380
Query: 233 PIRQELVNKKGVS 245
++ E V ++
Sbjct: 381 RMKDEGVEPNWIT 393
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + GD A ++F + +D++SW+T++SGL+ +G +A +F M +
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 189
Query: 142 PDDVTFIALIS--ACS 155
+ V++ A++S ACS
Sbjct: 190 -NSVSWNAMVSGFACS 204
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 186/288 (64%), Gaps = 8/288 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+W +MI GYA+ G A+ +F+EM K+ P+E T+V+V+SAC + AL
Sbjct: 195 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 254
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +V +++ + LS+S NA+I MY +CG + A +VF +A +D++S++T+ISG
Sbjct: 255 GNWVVRFLTENQIKLSISG--HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGF 312
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ L S M G+ PD VTFI +++ACSH GL+++G +F+++ P
Sbjct: 313 AAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PA 367
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GR G LE+A+ + MP+E V+G+LLNA RIH+ E+ + +L
Sbjct: 368 IDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLF 427
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A A RW+D +IR+ +++ G+KK TG SW+E
Sbjct: 428 ELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 475
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 106/207 (51%), Gaps = 41/207 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M+ GYA+ G EEA+ +F EM
Sbjct: 131 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEM---------------------------L 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G Y +S + NA+I+ Y++ GD+ A ++FN + +++++W+++I+G A
Sbjct: 164 GAYRNS------------VTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYA 211
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG A++LF MI + PD+VT +++ISAC H G ++ G + + + T +I
Sbjct: 212 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQIKLS 270
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++ MY R G +E+A+ +EM
Sbjct: 271 ISGHNAMIFMYSRCGSMEDAKRVFQEM 297
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA+++ Y K G A +F+++ +++I+W+ +++G A A + F M V
Sbjct: 78 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV- 136
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ A++S + GL ++ L LF M Y + + ++ Y R G L+ A
Sbjct: 137 ---VSWNAMLSGYAQNGLAEEALRLFDEMLGAYR---NSVTWNAMISAYMRVGDLDSARK 190
Query: 202 FIREMP 207
MP
Sbjct: 191 LFNTMP 196
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 186/288 (64%), Gaps = 8/288 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+W +MI GYA+ G A+ +F+EM K+ P+E T+V+V+SAC + AL
Sbjct: 321 MPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALEL 380
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +V +++ + LS+S NA+I MY +CG + A +VF +A +D++S++T+ISG
Sbjct: 381 GNWVVRFLTENQIKLSISG--HNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGF 438
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ L S M G+ PD VTFI +++ACSH GL+++G +F+++ P
Sbjct: 439 AAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PA 493
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GR G LE+A+ + MP+E V+G+LLNA RIH+ E+ + +L
Sbjct: 494 IDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLF 553
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A A RW+D +IR+ +++ G+KK TG SW+E
Sbjct: 554 ELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 123/211 (58%), Gaps = 12/211 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS---- 56
MP+R VVSW M+ GYA+ G EEA+ +F EM EP+E T V V+SACSS
Sbjct: 220 MPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAG-IEPDETTWVTVISACSSRGDPCL 278
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
A S + +H + + ++ V A+++MY K GD+ A ++FN + +++++W+++I
Sbjct: 279 AASLVRTLH-----QKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMI 333
Query: 117 SGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
+G A NG A++LF MI + PD+VT +++ISAC H G ++ G + + + T +
Sbjct: 334 AGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL-TENQ 392
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I + ++ MY R G +E+A+ +EM
Sbjct: 393 IKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ Y K D+ A + F+ + + ++SW+ ++SG A NG +AL+LF M+ G+ P
Sbjct: 199 AMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEP 258
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV-----DMYGRAGLLE 197
D+ T++ +ISACS G D L A S V + + C V DMY + G L+
Sbjct: 259 DETTWVTVISACSSRG--DPCL----AASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLD 312
Query: 198 EAEAFIREMP 207
A MP
Sbjct: 313 SARKLFNTMP 322
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 180/292 (61%), Gaps = 3/292 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VV WTT+I GYAE+GF EA ++ +ME+ P++ L+++L+AC+ L G
Sbjct: 277 PAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAG-LRPDDGFLISILAACAESGMLGLG 335
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGLA 120
+ +H+ + R+ V NA I+MY KCG + A VF+ M+A KD++SW+++I G A
Sbjct: 336 KRIHASMR-RWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFA 394
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LFS M+ G PD TF+ L+ AC+H GLV++G F +M VY IVPQ
Sbjct: 395 MHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQV 454
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GR G L+EA +R MP+E + G LLNACR+H + + + ++L
Sbjct: 455 EHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFK 514
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G ++L+SN +A A W + +R ++ G +K +G S IEV +
Sbjct: 515 VEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEV 566
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 11/229 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W +MIGG G E A +F EM E + + +L + +
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEM-----PERDMVSWNTMLDGYAKAGEMDR 237
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + R +S S +V Y K GD+ +A +F+ K+++ W+T+I+G A
Sbjct: 238 AFELFERMPQRNIVSWSTMVCG-----YSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYA 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+A +L+ M G+ PDD I++++AC+ G++ G + +M + T
Sbjct: 293 EKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRR-WRFRCGT 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ +DMY + G L+ A M + + W +++ +H + E
Sbjct: 352 KVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGE 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 1 MPKRDVVSWTTMIGGYAER-GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P +V + ++I +A + F +M+K P+ T +L AC+ S+L
Sbjct: 79 VPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNG-LFPDNFTYPFLLKACTGPSSLP 137
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--AIQVFNMLAYKDMISWSTVIS 117
+ +H+++ ++ V N++I+ Y +CG G+ A+ +F + +D+++W+++I
Sbjct: 138 LVRMIHAHVE-KFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIG 196
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GL G A +LF M D V++ ++ + G +D+ LF+ M
Sbjct: 197 GLVRCGELEGACKLFDEMPER----DMVSWNTMLDGYAKAGEMDRAFELFERM------- 245
Query: 178 PQTQ--HYACVVDMYGRAGLLEEAEAFIREMP 207
PQ ++ +V Y + G ++ A P
Sbjct: 246 PQRNIVSWSTMVCGYSKGGDMDMARVLFDRCP 277
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVVSW +MI G+A G E+A+ +F M + EP+ T V +L AC+ ++
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSRM-VPEGFEPDTYTFVGLLCACTHAGLVNE 436
Query: 61 G-QYVHS 66
G +Y +S
Sbjct: 437 GRKYFYS 443
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +MIGG+A G +EA++ F EME + PN TL++ LSAC+S AL
Sbjct: 284 MPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSG-VSPNALTLLSTLSACASHGALDT 342
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+Y+ + D++ + +++I+MY KCGD+ A+Q+F +D+ +W++++ GLA
Sbjct: 343 GAWIHAYVD-KNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLA 401
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL FS M V PDDVT + ++SAC+H GL+DQG F++M V+ +VP+
Sbjct: 402 MHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKV 461
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GR G L+EA I MP+EA +WGA L+ACR+H N E+ + + L+
Sbjct: 462 EHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLG 521
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++SN +A +W+ + +R EI++ GLKK GCS IEVN S+
Sbjct: 522 LXPRDPWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSV 573
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 113/254 (44%), Gaps = 14/254 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQY 63
+V W TMI E G + M+ + PN T + +L A S + G+
Sbjct: 53 NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+ + R + S V A++ YV CG VG QVF+ + ++ W+ +I
Sbjct: 113 VHASV-VRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVT 171
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQT 180
+AL+LF M G+ PD V ++SAC G L D G+ KAM E I
Sbjct: 172 FPEKALELFRTMREVGLTPDMVAVSTVVSAC--GLLGDLGVA--KAMHCFIEKSGIEVDA 227
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ ++ YG G L+ A F +E P++ VW +++ H N E+ + Q + +
Sbjct: 228 FVSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286
Query: 241 KKGVS----VGTFA 250
+ VS +G FA
Sbjct: 287 RDVVSWNSMIGGFA 300
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 56/332 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +V WT +I Y F E+A+ +F+ M + P+ + V+SAC + L
Sbjct: 152 MRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVG-LTPDMVAVSTVVSACGLLGDLGV 210
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI---------------------- 98
+ +H +I + + V V + +I+ Y +CG + A
Sbjct: 211 AKAMHCFIE-KSGIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSV 269
Query: 99 ---------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
Q+F + +D++SW+++I G A G ++AL F M +GV P+ +T ++
Sbjct: 270 EHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLS 329
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+SAC+ G +D G + A ++ + ++DMY + G +++A E
Sbjct: 330 TLSACASHGALDTGAWI-HAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEE-STR 387
Query: 210 AEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS-VGT---------------- 248
+ W +++ +H E F +++ V V+ VG
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447
Query: 249 FALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
F M F + E + D + RMG K+
Sbjct: 448 FQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKE 479
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
PK RDVV+WT MIGGY++ G +A+ + EM E+ + PN T+ L AC+S++AL
Sbjct: 435 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALR 494
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+Y +V V N +I+MY KCG + A VF+ + K+ ++W+++++G
Sbjct: 495 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGY 554
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +AL +F M G D VT + ++ ACSH G++DQG+ F M TV+ + P
Sbjct: 555 GMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG 614
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAG L A I EMP+E VW A L+ CRIH E+ + +++
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 674
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
G++ L+SN +A A RW+D +IR +R G+KK+ GCSW+E
Sbjct: 675 ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 32/266 (12%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+ I GYA+RG EA+ V ++M + +PNE TL++VLS C+S+ AL G+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG-IKPNEVTLISVLSGCASVGALMHGK 385
Query: 63 YVHSYISTRYDLSV-------SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWS 113
+H Y + +Y + + N+V N +I+MY KC V A +F+ L+ K D+++W+
Sbjct: 386 EIHCY-AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 114 TVISGLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
+I G + +G +AL+L S M P+ T + AC+ L +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA-------SLAALRIGK 497
Query: 172 TVYEIVPQTQHYA-------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 224
++ + Q A C++DMY + G + +A M + E + W +L+ +
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSLMTGYGM 556
Query: 225 HRNDE----MFDPIRQELVNKKGVSV 246
H E +FD +R+ GV++
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTL 582
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 53/300 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW ++I YA+ G + A+ +F M P+ TLVNVL C+S+ S G+ +
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------------- 111
H + T ++ + VGN +++MY KCG + A VF+ ++ KD++S
Sbjct: 252 HCFAVTS-EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310
Query: 112 ----------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
WS ISG A G G +AL + M+ +G+ P++VT I+
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-------CVVDMYGRAGLLEEAEAF 202
++S C+ G + G + + Y I + + ++DMY + ++ A A
Sbjct: 371 VLSGCASVGALMHGKEI-HCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAM 429
Query: 203 IREM-PIEAEWSVWGALLNACRIHRN--------DEMFDPIRQELVNKKGVSVGTFALMS 253
+ P E + W ++ H + EMF+ Q N +S A S
Sbjct: 430 FDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACAS 489
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 7/221 (3%)
Query: 2 PKRD--VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
P D V W ++I Y + G + + +F M P+ T V AC IS++
Sbjct: 86 PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT-PDNYTFPFVFKACGEISSVR 144
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ H+ +S + VGNA++ MY +C + A +VF+ ++ D++SW+++I
Sbjct: 145 CGESAHA-LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + AL++FS M G PD++T + ++ C+ G G L + E++
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL-HCFAVTSEMIQ 262
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
C+VDMY + G+++EA M ++ S W A++
Sbjct: 263 NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMV 302
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ V+WT+++ GY G+ EEA+ +F EM + + + TL+ VL ACS +
Sbjct: 539 MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSGMIDQ 597
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + + T + +S ++++ + G + A+++ M + W +S
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657
Query: 120 AMNG 123
++G
Sbjct: 658 RIHG 661
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 189/294 (64%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
MP R+VVSW+ MI YA+ G EA+ F+EM +TK++ PN T+V+VL AC+S++AL
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI R S+ ++ +A++ MY +CG + + +VF+ + +D++SW+++IS
Sbjct: 303 QGKLIHGYILRRGLDSILPVI-SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G G++A+Q+F M+ NG P VTF++++ ACSH GLV++G LF+ M + I PQ
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ 421
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA +++M E VWG+LL +CRIH N E+ + + L
Sbjct: 422 IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A W++ +++ + GL+K G W+EV ++
Sbjct: 482 ALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMY 535
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 20/234 (8%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC----SSISAL 58
KR + W + G EE + ++ +M + E + T VL AC +++ L
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTVNHL 198
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H+++ TR S + +++MY + G V A VF + ++++SWS +I+
Sbjct: 199 MKGKEIHAHL-TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 119 LAMNGCGRQALQLFSLMI--INGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMS 171
A NG +AL+ F M+ P+ VT ++++ AC+ ++Q G IL + +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLD 317
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ ++ + +V MYGR G LE + M + + W +L+++ +H
Sbjct: 318 SILPVI------SALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVH 364
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 12/232 (5%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+S +I + G ++A+ V ++E+ P++ T ++ C S+LS VH
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVL-----SQESSPSQQTYELLILCCGHRSSLSDALRVHR 101
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+I + +I MY G V A +VF+ + + W+ + L + G G
Sbjct: 102 HILDNGS-DQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH---Y 183
+ L L+ M GV D T+ ++ AC L+ K + + H
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+VDMY R G ++ A MP+ S W A++ AC +N + F+ +R
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVS-WSAMI-AC-YAKNGKAFEALR 269
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 186/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVV+WT M+ GYA+ GF +EA+ +F+ M++ + +P++ T + L++CSS + L
Sbjct: 359 LPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQ-QGIKPDKMTFTSALTSCSSPAFLQE 417
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H + Y L V + +A+++MY KCG + A VFN ++ +++++W+ +I+G
Sbjct: 418 GKSIHQQLVHAGYSLDV--YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGC 475
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G R+AL+ F M G+ PD VTF +++SAC+H GLV++G F++M Y I P
Sbjct: 476 AQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPM 535
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C VD+ GRAG LEEAE I MP + SVWGALL+ACRIH + E + + ++
Sbjct: 536 VEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVL 595
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + +SN +A A R+EDA K+R + + + K+ G SWIEV+ +
Sbjct: 596 KLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 648
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 136/248 (54%), Gaps = 11/248 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++VV+WT +I GYA++G + A+ + ++M++ E PN+ T ++L C++ AL
Sbjct: 258 LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQA-EVAPNKITYTSILQGCTTPLALEH 316
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH YI + Y + V NA+I MY KCG + A ++F L ++D+++W+ +++G
Sbjct: 317 GKKVHRYIIQSGYGREI--WVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGY 374
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVP 178
A G +A+ LF M G+ PD +TF + +++CS + +G + + + Y +
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQE 237
Q + +V MY + G +++A +M E W A++ C H R E + Q
Sbjct: 435 YLQ--SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQHGRCREALEYFEQ- 490
Query: 238 LVNKKGVS 245
+ K+G+
Sbjct: 491 -MKKQGIK 497
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 120/240 (50%), Gaps = 17/240 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R++VSWT MI + EA ++ M K +P++ T V++L+A ++ L GQ
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH I+ + L + VG +++ MY KCGD+ A +F+ L K++++W+ +I+G A G
Sbjct: 219 VHMEIA-KAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQG 277
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS------HGGLVDQGLILFKAMSTVYEIV 177
AL+L M V P+ +T+ +++ C+ HG V + +I ++ +
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVV- 336
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
++ MY + G L+EA ++P + W A++ ++ +DE D R+
Sbjct: 337 ------NALITMYCKCGGLKEARKLFGDLP-HRDVVTWTAMVTGYAQLGFHDEAIDLFRR 389
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 89/173 (51%), Gaps = 5/173 (2%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C+ + +L G+ VH+ I + + + + N +++MY KCG + A +VF+ + +
Sbjct: 102 LLQECARLRSLEQGREVHAAI-LKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDR 160
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
+++SW+ +I +A + + M + G PD VTF++L++A ++ L+ G +
Sbjct: 161 NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220
Query: 168 KAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ E+ P+ +V MY + G + +A+ ++P E W L+
Sbjct: 221 MEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIFDKLP-EKNVVTWTLLI 270
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 188/293 (64%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV+WT MI GYA+ G +A+ +F+ M + + +PN TL VLS SS+++L
Sbjct: 372 LKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIR-EGPKPNNYTLAAVLSVISSLASLDH 430
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISGL 119
G+ +H+ ++ R + S VGNA+I MY + G + A ++FN + +Y+D ++W+++I L
Sbjct: 431 GKQLHA-VAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSL 489
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A++LF M+ + PD +T++ ++SAC+H GLV+QG F M V+ I P
Sbjct: 490 AQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPT 549
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ HYAC++D+ GRAGLLEEA FIR MPIE + WG+LL++CR+H+ ++ ++L+
Sbjct: 550 SSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLL 609
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + ++NT + +WEDA K+R ++ +KK+ G SW+++ +
Sbjct: 610 LIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKV 662
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 123/252 (48%), Gaps = 35/252 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D+VSW ++I GY +G+ A+ F M K+ +P++ TL +VLSAC++ +L
Sbjct: 237 MTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKL 296
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC----------------------------- 91
G+ +H++I R D+ ++ VGNA+I+MY K
Sbjct: 297 GKQIHAHI-VRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDG 355
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GD+ A +F+ L ++D+++W+ +I G A NG AL LF LMI G P++ T
Sbjct: 356 YFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTL 415
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
A++S S +D G L A++ E V ++ MY R+G +++A +
Sbjct: 416 AAVLSVISSLASLDHGKQL-HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHIC 474
Query: 208 IEAEWSVWGALL 219
+ W +++
Sbjct: 475 SYRDTLTWTSMI 486
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D VSWTTMI GY G + AV F M + P + T NVL++C++ AL
Sbjct: 105 IPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSG-ISPTQFTFTNVLASCAAAQALDV 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS++ + S V N+++NMY KCGD +A VF+ + KD +W+T+IS +
Sbjct: 164 GKKVHSFV-VKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMIS-MH 221
Query: 121 MNGCGRQ-ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
M C AL LF M PD V++ ++I+ H G + L F M + P
Sbjct: 222 MQFCQFDLALALFDQM----TDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKP 276
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + K G++ A +VF+ + D +SW+T+I G G + A+ F M+ +G+
Sbjct: 83 NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGIS 142
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEA 199
P TF ++++C+ +D G + + + + +VP +++MY + G A
Sbjct: 143 PTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN---SLLNMYAKCGDSVMA 199
Query: 200 EAFIREMPIEAEWSVWGALLN 220
+ M ++ + S W +++
Sbjct: 200 KVVFDRMRLK-DTSTWNTMIS 219
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + + N ++N+YVK G A ++F+ + K SW+T++S A
Sbjct: 31 GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G A ++F + PD V++ +I +H GL + F M
Sbjct: 91 KAGNLDSARRVFDEI----PQPDSVSWTTMIVGYNHLGLFKSAVHAFLRM 136
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 183/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK VSW MI GY G +A+ +F EM K+ EP+ T +VL+ACS ++AL
Sbjct: 369 MPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSF-VEPDAITFTSVLAACSQLAALEK 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I R +L + +V A+++MY KCG V A VF L +D++SW+++I+
Sbjct: 428 GREIHNLIVER-NLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYG 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL+LF+ M+ + V PD VTF+A++SACSH GLVD GL F M VY I+P+
Sbjct: 487 SHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRI 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++ + GRAG L EA ++ P I ++ + L +ACR+H+N ++ I + L+
Sbjct: 547 EHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLI 606
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+K T+ ++SN +A +W++ +R +++ +GLKK GCSWIE+N I
Sbjct: 607 DKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEINEKI 659
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 12/233 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV W T+I Y + G EEA+ F M + EP+ T+ +S+C+ + L
Sbjct: 167 MPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFG-FEPDSVTITTAISSCARLLDLDR 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + V A+++MY KCG + +AI+VF + K +++W+++I+G
Sbjct: 226 GREIHKEL-VNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYG 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G +QLF M GV P T + + ACS + +G + + I P
Sbjct: 285 FKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYI-IRNRIQPDI 343
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP--IEAEWSVW-------GALLNACRI 224
+ ++D+Y + G +E AE + MP W+V G L +A R+
Sbjct: 344 FLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRL 396
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 135/262 (51%), Gaps = 20/262 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VV+W +MI GY +G + +F+ M ++ +P TL + L ACS + L
Sbjct: 268 MPNKTVVAWNSMINGYGFKGDGISCIQLFKRM-YSEGVKPTLTTLTSTLMACSQSAQLLE 326
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH YI R + + ++++++Y KCG V A +F ++ +SW+ +ISG
Sbjct: 327 GKFVHGYI-IRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYV 385
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
G AL+LF M + V PD +TF ++++ACS +++G LI+ + + E
Sbjct: 386 TEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGN-NE 444
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMF 231
+V ++DMY + G +EEA + +P E + W +++ A R++ E+F
Sbjct: 445 VV-----MGALLDMYAKCGAVEEAFGVFKCLP-ERDLVSWTSMITAYGSHGRVYEALELF 498
Query: 232 DPIRQELVNKKGVSVGTFALMS 253
+ Q N K V A++S
Sbjct: 499 AEMLQS--NVKPDRVTFLAILS 518
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 110/211 (52%), Gaps = 5/211 (2%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
++ GY +EA+ +F ++ +P+ T +VL AC + + GQ +H+ + +
Sbjct: 76 LMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCL-VK 134
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
L V +VG++++ MY KC + A+++F+ + KD+ W+TVIS +G +AL+
Sbjct: 135 EGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRY 194
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYACVVDMY 190
F +M G PD VT IS+C+ +D+G + K + ++ + + A +VDMY
Sbjct: 195 FGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVS--AALVDMY 252
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G+ G LE A +MP W +++N
Sbjct: 253 GKCGQLEMAIEVFEQMP-NKTVVAWNSMING 282
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 188/294 (63%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV+WT MI GY + G EA+++F+ M +E PN TL +LS SS+++L
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGLYGEAINLFRSM-VGEEQRPNSYTLAAMLSVASSLASLGH 431
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISG 118
G+ +H S + + SVS V NA+I MY K G + A + F+++ +D +SW+++I
Sbjct: 432 GKQIHGSAVKSGEIYSVS--VSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIA 489
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G +AL+LF M++ G+ PD +T++ + SAC+H GLV+QG F M V +I+P
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP 549
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HYAC+VD++GRAGLL+EA+ FI +MPIE + WG+LL+ACR+++N ++ + L
Sbjct: 550 TLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERL 609
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G ++ ++N ++ +WE+A KIR ++ +KK+ G SWIEV +
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 137/289 (47%), Gaps = 42/289 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+W +MI GY +RG+ A+ +F +M + P+ TL +VLSAC+++ L
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKC---------------------------- 91
G+ +HS+I +T +D +S +V NA+I+MY +C
Sbjct: 298 GEQIHSHIVTTGFD--ISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLD 355
Query: 92 -----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
GD+ A +F+ L +D+++W+ +I G +G +A+ LF M+ P+ T
Sbjct: 356 GYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYT 415
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++S S + G + + EI + A ++ MY +AG + A +
Sbjct: 416 LAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNA-LITMYAKAGSITSASRAFDLI 474
Query: 207 PIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVS-VGTFA 250
E + W +++ A H + E+F+ + E + ++ VG F+
Sbjct: 475 RCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 136/277 (49%), Gaps = 42/277 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD VSWTTMI GY G +A+ + EM + + EP++ TL NVL++ ++ L
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMR-EGIEPSQFTLTNVLASVAATRCLET 164
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD----------------------VGIAI 98
G+ VHS+I + L + V N+++NMY KCGD + + +
Sbjct: 165 GKKVHSFI-VKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHM 223
Query: 99 QV---------FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFI 148
QV F +A +D+++W+++ISG G +AL +FS M+ + + PD T
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLA 283
Query: 149 ALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI---- 203
+++SAC++ L I ++T ++I + ++ MY R G +E A I
Sbjct: 284 SVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQRG 341
Query: 204 -REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+++ IE ++ + ++ +FD ++ V
Sbjct: 342 TKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDV 378
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N V++ Y K GD+ + + F+ L +D +SW+T+I G G +A+++ M+ G+
Sbjct: 84 NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143
Query: 142 PDDVTFIALISACSHGGLVDQG 163
P T ++++ + ++ G
Sbjct: 144 PSQFTLTNVLASVAATRCLETG 165
>gi|125595818|gb|EAZ35598.1| hypothetical protein OsJ_19887 [Oryza sativa Japonica Group]
Length = 495
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 186/293 (63%), Gaps = 16/293 (5%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K++VVSW TM+ +A G EEA+++FQEM+ P++AT V L AC+ + AL
Sbjct: 200 MPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAA-VRPDDATFVAALGACAQLGALD 258
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H+Y+ R S +VGNA+++MY KCG V A +VF+ +A +D+ +++++I GL
Sbjct: 259 TGRWLHAYMG-RMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGL 317
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G AL LF+ M GV P++VT + +++AC H GLV++GL AM P+
Sbjct: 318 AMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPE-----PR 372
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVDM GRAG L++AE I MP+ ++ +W +LL ACR H + E R E V
Sbjct: 373 IEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVE-----RAERV 427
Query: 240 NKKGVS---VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ V+ G + LMSNT+A R +A K+R ++RR + K GCS IE++
Sbjct: 428 MRRRVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEID 480
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 17/197 (8%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQ 62
RDVVS T M+ G+A GF +EAV +F M + + I L+ G+
Sbjct: 115 RDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCVVHRRPSPPPRRSRRARQIGDLALGR 174
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H ++ R +++ + NA+++M M K+++SW+T++S A
Sbjct: 175 EAHRRVAER-KVAMDVVAWNALVDM--------------RMPVKKNVVSWNTMMSAFARA 219
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL LF M V PDD TF+A + AC+ G +D G L M +
Sbjct: 220 GELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVG 279
Query: 183 YACVVDMYGRAGLLEEA 199
A ++DMY + G +++A
Sbjct: 280 NA-LLDMYAKCGAVDQA 295
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 183/291 (62%), Gaps = 6/291 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+W+TMIGGYA G +A+ +F+ K ++ +P+E ++ ++SACS + +
Sbjct: 225 MPMKNLVTWSTMIGGYARNGQPLKALELFERF-KEQDIKPDETFILGIISACSQLGIIDA 283
Query: 61 GQ-YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ +H+Y+ +S+L V ++I+MY KCG + A+Q+F M KD++ +ST+I+
Sbjct: 284 AESIIHNYVGPSL---LSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAA 340
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G GR A+ LF M + PD VTF+ +++AC+HGGLVD+G FK M+ + I P
Sbjct: 341 LANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQP 400
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HYACVVD+ GR G LEEA IR MPI VWGALL ACR+H N ++ + EL
Sbjct: 401 SEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAEL 460
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RW K+R +IR ++K G SWIE++
Sbjct: 461 FKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 511
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 55/206 (26%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT+MI GY + G EA +F M
Sbjct: 162 MPERNVVSWTSMICGYVKAGDMAEAQVLFDSM---------------------------- 193
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISG 118
V +L N +++ Y+ GD + +F+ + K++++WST+I G
Sbjct: 194 --------------PVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGG 239
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NG +AL+LF + PD+ + +ISACS G++D A S ++ V
Sbjct: 240 YARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIID------AAESIIHNYVG 293
Query: 179 QT-----QHYACVVDMYGRAGLLEEA 199
+ + + ++DMY + G +E+A
Sbjct: 294 PSLLSDLRVFTSLIDMYAKCGSIEKA 319
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW T+I GYA+ G EA+ V++ ME+ KE PN+ T V++L A + + AL
Sbjct: 246 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 305
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + +L + V +I++Y KCG + A+ +F + + ++W+ +IS
Sbjct: 306 GMKIHGRV-IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 364
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G + L+LF M+ GV PD VTF++L+SACSH G V++G F+ M Y I P
Sbjct: 365 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSL 423
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE A FI++MP++ + S+WGALL ACRIH N E+ L
Sbjct: 424 KHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 483
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + L+SN +A +WE +K+R R GLKK G S IEVN +
Sbjct: 484 VDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 535
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 124/299 (41%), Gaps = 75/299 (25%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DV +W +MI Y G EA+ F ++ E P+ T VL AC + L
Sbjct: 77 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVD 133
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + + V ++I+MY + G GIA +F+ + ++DM SW+ +ISGL
Sbjct: 134 GRKIHCW-AFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 192
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIA------------------------------- 149
NG QAL + M + G+ + VT ++
Sbjct: 193 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVI 252
Query: 150 ----LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY---------------------- 183
LI+ + GL + + ++K M EI+P +
Sbjct: 253 SWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGR 312
Query: 184 -------------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
C++D+YG+ G L +A + ++P E+ W A+++ IH + E
Sbjct: 313 VIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGHAE 370
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLM 135
S + ++N+Y GDV ++ F+ + KD+ +W+++IS NG +A+ F L+
Sbjct: 50 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 109
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
+++ + PD TF ++ AC G LVD I A ++ A ++ MY R G
Sbjct: 110 LVSEIRPDFYTFPPVLKAC--GTLVDGRKIHCWAFKLGFQW--NVFVAASLIHMYSRFGF 165
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVS-VGTFA 250
A + +MP + W A+++ + N ++ D +R E + V+ V
Sbjct: 166 TGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 224
Query: 251 LMSNTFAGADRWEDANKI 268
+ + +A + A+K+
Sbjct: 225 VFVDMYAKLGLLDSAHKV 242
>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
from Arabidopsis thaliana BAC F28A21 gi|T04867 and
contains multiple PPR PF|01535 repeats. EST gb|AI999742
comes from this gene. This gene may be cut off, partial
[Arabidopsis thaliana]
Length = 757
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT++I G A+ G EA+ +F+EM+ +PN T+ ++L AC +I+AL G+
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + R L + VG+A+I+MY KCG + ++ VFNM+ K+++ W+++++G +M+G
Sbjct: 411 HGF-AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++ + +F ++ + PD ++F +L+SAC GL D+G FK MS Y I P+ +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V++ GRAG L+EA I+EMP E + VWGALLN+CR+ N ++ + ++L + +
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ L+SN +A W + + IR+++ +GLKK GCSWI+V ++
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 119/256 (46%), Gaps = 39/256 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++VSW ++ G+ G+ +EAV +FQ++ P++ T+ +VL + L+ G+ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDV-GI--------------------------- 96
H Y+ + L V +A+I+MY K G V GI
Sbjct: 275 HGYV-IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 97 ---AIQVFNMLAYKDM----ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
A+++F + + M +SW+++I+G A NG +AL+LF M + GV P+ VT +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC + + G V+ ++ + ++DMY + G + ++ MP +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 210 AEWSVWGALLNACRIH 225
W +L+N +H
Sbjct: 453 -NLVCWNSLMNGFSMH 467
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + S++++I + +++ VF M + P+ L N+ C+ +SA
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFKVCAELSAFKV 134
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +S L + V ++ +MY++CG +G A +VF+ ++ KD+++ S ++ A
Sbjct: 135 GKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
GC + +++ S M +G+ + V++ ++S + G + +++F+ +
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V W +++ G++ G +E +S+F+ + +T+ +P+ + ++LSAC +
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G +S Y + + ++N+ + G + A + + ++ D W G
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW-----GA 562
Query: 120 AMNGCGRQ 127
+N C Q
Sbjct: 563 LLNSCRLQ 570
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 182/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + ++A+ +F+ M + +PN +TL +VL CS++SAL F
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + LS + VG ++++MY KCGD+ A ++F + +D+++W+ +ISG A
Sbjct: 260 GKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++A+ LF M GV P+ +TF+A+++AC H GL D G+ F+ M +Y I P+
Sbjct: 319 QHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRV 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAG LE A IR MP E S +G LL ACR+++N E + +L+
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K S G + ++N +AGA++W+D +++R ++ + K G SWIE+
Sbjct: 439 KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIK 487
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 22/253 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW TM+ G ++ G EEA +VF M N + ++S + +S
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR-----NSVSWNAMVSGFACSRDMSA 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + D ++ A+++ Y+ G+V AI+ F + ++++SW+ V++G
Sbjct: 161 AEEWFRNAPEKGDA----VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N AL+LF M+ V P+ T +++ CS+ + G K + +P
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG----KQIHQWCMKLPL 272
Query: 180 TQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 232
+++ +V MY + G L A EM + W A+++ H + + +F+
Sbjct: 273 SRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFE 331
Query: 233 PIRQELVNKKGVS 245
++ E V ++
Sbjct: 332 RMKDEGVEPNWIT 344
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + GD A ++F + +D++SW+T++SGL+ +G +A +F M +
Sbjct: 84 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 140
Query: 142 PDDVTFIALIS--ACS 155
+ V++ A++S ACS
Sbjct: 141 -NSVSWNAMVSGFACS 155
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 176/289 (60%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+VVSW+ M+ Y+ +EA+ +F +M EP +ATLV+VLSAC+ + +L
Sbjct: 325 IPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAG-VEPIDATLVSVLSACAQLCSLDV 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +++ + + ++ + NA I+M+ KCGDVG A ++F+ + K+++SW+T+I
Sbjct: 384 GTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHG 443
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL LF NG+ PD+ T+I ++SACSHGGLV +G FK M VY I P+
Sbjct: 444 LHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRA 503
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ G+ GLL+EA R MP+ A+ + WGALLNACR+H N E+ +L
Sbjct: 504 EHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAG 563
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + LMS +A +W +R +R +KK GCS IEV+
Sbjct: 564 LDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVD 612
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 123/273 (45%), Gaps = 41/273 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWTT+I GYA G +EA VF M + PNE TLV SA + L
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I NL NA+++M+ KCG V A +VF+ + KD+ SW++++S A
Sbjct: 252 GRTVHQCIVESGGRMSVNL-ENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Query: 121 MNGCG---------------------------------RQALQLFSLMIINGVFPDDVTF 147
CG +A+++F+ MI GV P D T
Sbjct: 311 K--CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 148 IALISACSHGGLVDQGLILFKA--MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
++++SAC+ +D G L+ +S E+ P + +DM+ + G + A
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSN--AFIDMFAKCGDVGAASRLFSN 426
Query: 206 MPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
M + S W ++ A +H E + QE
Sbjct: 427 MEDKNVVS-WNTMIMAHGLHGQPEEALHLFQEF 458
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 140/275 (50%), Gaps = 21/275 (7%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
TM+ G+ G A+++F+ + + + A + V +A +S S + +H
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT---EAIHCVAFK 158
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
R + S L GNA+++MY + A ++F+ +A +D++SW+T+I G A G +A +
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWR 218
Query: 131 LFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV--- 186
+F M++ V+P++VT +A SA GL+ G TV++ + ++ V
Sbjct: 219 VFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLG-------RTVHQCIVESGGRMSVNLE 271
Query: 187 ---VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
VDM+G+ G + A+ MPI+ +S W ++++A + E + +E+ N+
Sbjct: 272 NALVDMFGKCGCVAAAKEVFDGMPIKDVYS-WTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
VS ++ M ++ A+ ++A +I +++ G++
Sbjct: 331 VS---WSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 188/298 (63%), Gaps = 7/298 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+V W M+ GY + G EA+ +F++M ++ EP+E ++V LSA + +
Sbjct: 214 LPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSG-VEPDEVSVVLALSAVAQLGTAES 272
Query: 61 GQYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY---KDMISWST 114
G+++HS+++ R + ++ VG A+++MY KCG + A+ VF L +D+++W+
Sbjct: 273 GRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNA 332
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I+G AM+G R+AL+ F + G++P D+TFI +++ACSH GLVD+G LF AM Y
Sbjct: 333 MINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEY 392
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
IVP+ +HY C+VD+ GRAG +EEA ++ M + + ++W +LL ACR+H+N + +
Sbjct: 393 GIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRV 452
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
LV + GT+ L+SN +A A +W + ++R +R G++K+ GCS +EV +
Sbjct: 453 ADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRV 510
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 43/274 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSF 60
P V +T+ I ++ RG A+++ EM ++ P TL L AC L+
Sbjct: 83 PDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPACGC---LAV 139
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMY-------------------------------- 88
G+ +H Y + + LS V A++ MY
Sbjct: 140 GRALHGY-AVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCY 198
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
K G + A +F+ L KD++ W+ ++ G +G +AL+LF M+ +GV PD+V+ +
Sbjct: 199 AKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVV 258
Query: 149 ALISACSHGGLVDQGLILFKAMST---VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+SA + G + G L ++ + + +VDMY + G LEEA A R+
Sbjct: 259 LALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRD 318
Query: 206 MPIEAEWSV--WGALLNACRIH-RNDEMFDPIRQ 236
+ + V W A++N +H R+ E + Q
Sbjct: 319 LGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQ 352
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW T+I GYA+ G EA+ V++ ME+ KE PN+ T V++L A + + AL
Sbjct: 479 IPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQ 538
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + +L + V +I++Y KCG + A+ +F + + ++W+ +IS
Sbjct: 539 GMKIHGRV-IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHG 597
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G + L+LF M+ GV PD VTF++L+SACSH G V++G F+ M Y I P
Sbjct: 598 IHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSL 656
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE A FI++MP++ + S+WGALL ACRIH N E+ L
Sbjct: 657 KHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFE 716
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + L+SN +A +WE +K+R R GLKK G S IEVN +
Sbjct: 717 VDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 768
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 14/231 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW ++I Y + A F +M+ +P+ TLV++ S + + V
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQ-LNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I R L ++GNAV++MY K G + A +VF ++ KD+ISW+T+I+G A NG
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGL 499
Query: 125 GRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A++++ +M + P+ T+++++ A +H G + QG M ++ H
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG------MKIHGRVIKTNLHL 553
Query: 184 -----ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
C++D+YG+ G L +A + ++P E+ + W A+++ IH + E
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE 603
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 19/238 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DV +W +MI Y G EA+ F ++ E P+ T VL AC + L
Sbjct: 177 IPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVD 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + + V ++I+MY + G GIA +F+ + ++DM SW+ +ISGL
Sbjct: 234 GRKIHCW-AFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG QAL + M + G+ + VT ++++ C G + +++ +Y I
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH-----LYVIKHGL 347
Query: 181 QHYACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ V ++MY + G LE+A ++M I S W +++ A +ND DP+
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVS-WNSIIAA--YEQND---DPV 399
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI G + G +A+ V EM + + + N T+V++L C + +S
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVCPQLGDIST 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y+ ++ L V NA+INMY K G++ A + F + D++SW+++I+
Sbjct: 335 AMLIHLYV-IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N A F M +NG PD +T ++L S + HG ++ +G ++
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ VVDMY + GLL+ A +P++ S W L+
Sbjct: 454 VIG-----------NAVVDMYAKLGLLDSAHKVFEIIPVKDVIS-WNTLITG 493
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLM 135
S + ++N+Y GDV ++ F+ + KD+ +W+++IS NG +A+ F L+
Sbjct: 150 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 209
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
+++ + PD TF ++ AC G LVD I A ++ A ++ MY R G
Sbjct: 210 LVSEIRPDFYTFPPVLKAC--GTLVDGRKIHCWAFKLGFQW--NVFVAASLIHMYSRFGF 265
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVSV 246
A + +MP + W A+++ + N ++ D +R E + V+V
Sbjct: 266 TGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTV 319
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 179/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+S M+ GY + G EA++ F +M KE P+ ATL+ LSA + +
Sbjct: 310 MPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDE 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H YI S+S +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 370 GVALHCYIEDN-GFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLA 428
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A +LF M V PDD+TFI +++AC+H GLV +GL+ F+ M V+++ P+
Sbjct: 429 IHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKL 488
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG +EEA+ F+ +MPIE VW LL+ACR H N + +P+ + L++
Sbjct: 489 QHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLIS 548
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++ L+SN +AG W D +IR +++ LKK GCS IE+ ++
Sbjct: 549 VDSYNPSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNV 600
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 44/226 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD++SW +MI G + G E A +F +M K
Sbjct: 248 MPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPK-------------------------- 281
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
R +S +N+V Y K G++ IA +F+ + +D+IS + +++G
Sbjct: 282 ----------RDVVSWANMVDG-----YAKLGEIDIARGLFDEMPERDVISCNAMMAGYV 326
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL F M+ +FPD+ T + +SA + G D+G+ L + + +
Sbjct: 327 QNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSE 386
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A ++DMY + G ++ A + ++ + W A++ IH
Sbjct: 387 KLGVA-LIDMYAKCGSIDNALSVFEDID-DKSIDHWNAIIGGLAIH 430
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 102/229 (44%), Gaps = 37/229 (16%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I ++ EA +F M + ++ + VL ACS + + G +H +
Sbjct: 90 WNAIIKSFSHGEDPREAFVIFNLMLENGVC-VDKFSFSLVLKACSRLGLIKEGMQIHGLL 148
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R ++ + N ++ +Y++CG +GIA Q+F+ + +D +S++++I G +G + A
Sbjct: 149 G-RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSA 207
Query: 129 LQLFSLM------------IINGV----------------FP--DDVTFIALISACSHGG 158
+LF +M +I+G P D +++ ++I C G
Sbjct: 208 RELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCG 267
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++ LF M ++V +A +VD Y + G ++ A EMP
Sbjct: 268 KMENAHHLFNQMPK-RDVVS----WANMVDGYAKLGEIDIARGLFDEMP 311
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 182/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + ++A+ +F+ M + +PN +TL +VL CS++SAL F
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + LS + VG ++++MY KCGD+ A ++F + +D+++W+ +ISG A
Sbjct: 260 GKQIHQWC-MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++A+ LF M GV P+ +TF+A+++AC H GL D G+ F+ M +Y I P+
Sbjct: 319 QHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRV 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAG LE A IR MP E S +G LL ACR+++N E + +L+
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K S G + ++N +AGA++W+D +++R ++ + K G SWIE+
Sbjct: 439 KDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIK 487
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 115/253 (45%), Gaps = 22/253 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW TM+ G ++ G EEA +VF M N + ++S + +S
Sbjct: 106 MPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR-----NSVSWNAMVSGFACSRDMSA 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + D ++ A+++ Y+ G+V AI+ F + ++++SW+ V++G
Sbjct: 161 AEEWFRNAPEKGDA----VLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N AL+LF M+ V P+ T +++ CS+ + G K + +P
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG----KQIHQWCMKLPL 272
Query: 180 TQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 232
+++ +V MY + G L A EM + W A+++ H + + +F+
Sbjct: 273 SRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFE 331
Query: 233 PIRQELVNKKGVS 245
++ E V ++
Sbjct: 332 RMKDEGVEPNWIT 344
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + GD A ++F + +D++SW+T++SGL+ +G +A +F M +
Sbjct: 84 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--- 140
Query: 142 PDDVTFIALIS--ACS 155
+ V++ A++S ACS
Sbjct: 141 -NSVSWNAMVSGFACS 155
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 182/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G +EA +F +M K E + A +V++L+AC+ +LS
Sbjct: 159 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSL 217
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H Y+ R +L S V NA+I+M+ KCG V A VF+ KD +SW+++I G
Sbjct: 218 GKRIHRYVRKR-NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 276
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL+LF+ M G PD VT I ++SAC+H G VD+G F M Y I+PQ
Sbjct: 277 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 336
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 337 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 396
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G +A++SN +A A +W D K R +++ G +K G SW+E+N +
Sbjct: 397 KLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETF 449
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW T++ GY + G E A +FQ M + NV+S + +S
Sbjct: 97 MPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----------NVVSWSTMVSG--- 142
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 143 ---------------------------YCKKGDLEMARVIFDKMPSKNLVTWTIMVSACA 175
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M V D +++++AC+ G + G + + + + T
Sbjct: 176 QKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRK-RNLGRST 234
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++DM+ + G + A+ ++ + W +++ +H + E+F ++Q
Sbjct: 235 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 294
Query: 237 ELVNKKGVSV 246
+ N V++
Sbjct: 295 QGFNPDAVTM 304
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHS++ + VGNA+I+ Y K G A +VF+ + +D++SW+T ++ + G
Sbjct: 27 VHSHV-VKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREG 85
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ-- 181
+LF M D V++ ++ + G V+ LF+ M P+
Sbjct: 86 ELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEAAFELFQRM-------PERNVV 134
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ +V Y + G LE A +MP W +++AC
Sbjct: 135 SWSTMVSGYCKKGDLEMARVIFDKMP-SKNLVTWTIMVSAC 174
>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 760
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT++I G A+ G EA+ +F+EM+ +PN T+ ++L AC +I+AL G+
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + R L + VG+A+I+MY KCG + ++ VFNM+ K+++ W+++++G +M+G
Sbjct: 411 HGF-AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++ + +F ++ + PD ++F +L+SAC GL D+G FK MS Y I P+ +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V++ GRAG L+EA I+EMP E + VWGALLN+CR+ N ++ + ++L + +
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ L+SN +A W + + IR+++ +GLKK GCSWI+V ++
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 39/256 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++VSW ++ G+ G+ +EAV +FQ++ P++ T+ +VL + L+ G+ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---------AY--------- 106
H Y+ + L V +A+I+MY K G V I +FN AY
Sbjct: 275 HGYV-IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+++SW+++I+G A NG +AL+LF M + GV P+ VT +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC + + G V+ ++ + ++DMY + G + ++ MP +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 210 AEWSVWGALLNACRIH 225
W +L+N +H
Sbjct: 453 -NLVCWNSLMNGFSMH 467
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + S++++I + +++ VF M + P+ L N+ C+ +SA
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFKVCAELSAFKV 134
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +S L + V ++ +MY++CG +G A +VF+ ++ KD+++ S ++ A
Sbjct: 135 GKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
GC + +++ S M +G+ + V++ ++S + G + +++F+ +
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V W +++ G++ G +E +S+F+ + +T+ +P+ + ++LSAC +
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G +S Y + + ++N+ + G + A + + ++ D W G
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW-----GA 562
Query: 120 AMNGCGRQ 127
+N C Q
Sbjct: 563 LLNSCRLQ 570
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 183/288 (63%), Gaps = 3/288 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT MI + G EEA+++F++M+ + EP+ T+V +L+ C+++ AL G+
Sbjct: 243 EKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVVTLLTCCANLGALDQGE 301
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H Y R + + ++G A+I+MY KCG + +++VF + +D +W+ +I GLA N
Sbjct: 302 WIHQYAEQR-KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATN 360
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + V PD VTFI ++SAC HGGLVD+G F AM VY+I P+ +H
Sbjct: 361 GQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEH 420
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ GRAGLL+EAE I ++PI + ++GALL AC+ H N EM + + + + +
Sbjct: 421 YSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQ 480
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
LMSN +A A RWED ++R ++ +KK GCS IEV
Sbjct: 481 DSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVK 528
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 133/281 (47%), Gaps = 42/281 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +V W M+ Y G+ AV++ ++ME++ P+ TLV ++ACS LS
Sbjct: 110 MPSRALVLWNMMVRCYIRCGWYSAAVALSEQMERSG-VTPDRVTLVTAVTACSRARDLSL 168
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ + ++ V NA+++MY K + A+++F + +++ISW+ ++SG
Sbjct: 169 GRRIHVYMDNVFGFNLP--VANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226
Query: 121 M-------------------------------NGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ +GC +AL LF M + V PD T +
Sbjct: 227 LAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVT 286
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPI 208
L++ C++ G +DQG + + + A ++DMY + G +E++ E F R
Sbjct: 287 LLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTA-LIDMYSKCGHIEKSLEVFWRMQGR 345
Query: 209 EAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
+A + W A++ + R E+F +++ V GV+
Sbjct: 346 DA--TAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVT 384
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
+I A RG ++V+ ++ + + + T VL A + G+ H+ + +
Sbjct: 20 LIRTLARRGSFARVMAVYYDL-RARGLVADSFTYPFVLRAVGVLKLSVEGRKAHA-AAVK 77
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
G++++ MY G V IA +VF+ + + ++ W+ ++ G A+ L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVAL 137
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQTQHYACVVDMY 190
M +GV PD VT + ++ACS + G + M V+ +P ++DMY
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN---ALLDMY 194
Query: 191 GRAGLLEEAEAFIREMP 207
+ LEEA +MP
Sbjct: 195 TKNDCLEEAVKLFEQMP 211
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 183/291 (62%), Gaps = 6/291 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+W+TMIGGYA G +A+ +F+ K ++ +P+E ++ ++SACS + +
Sbjct: 317 MPMKNLVTWSTMIGGYARNGQPLKALELFERF-KEQDIKPDETFILGIISACSQLGIIDA 375
Query: 61 GQ-YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ +H+Y+ +S+L V ++I+MY KCG + A+Q+F M KD++ +ST+I+
Sbjct: 376 AESIIHNYVGPSL---LSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAA 432
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G GR A+ LF M + PD VTF+ +++AC+HGGLVD+G FK M+ + I P
Sbjct: 433 LANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQP 492
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HYACVVD+ GR G LEEA IR MPI VWGALL ACR+H N ++ + EL
Sbjct: 493 SEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAEL 552
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RW K+R +IR ++K G SWIE++
Sbjct: 553 FKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELS 603
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 23/205 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+ SW M+ GY + G C A +F +M N + + C + S
Sbjct: 224 MPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWN----IMISGFCKAGELESA 279
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + N++ +++ Y+K GD A +F+ + K++++WST+I G
Sbjct: 280 KDFFDR-------MPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGY 332
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG +AL+LF + PD+ + +ISACS G++D A S ++ V
Sbjct: 333 ARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDA------AESIIHNYVGP 386
Query: 180 T-----QHYACVVDMYGRAGLLEEA 199
+ + + ++DMY + G +E+A
Sbjct: 387 SLLSDLRVFTSLIDMYAKCGSIEKA 411
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 112/239 (46%), Gaps = 33/239 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
WT++I GY E +EA S+F +M + + N T+ +VL A + ++ GQ V+ ++
Sbjct: 69 WTSLIHGYVENRQYDEAFSLFIQMRREPISVLN-FTISSVLKALARLTRFKGGQAVYGFV 127
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+Y + +V N+V++++++C V A Q F+ + KD++SW+ +ISG N A
Sbjct: 128 -LKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIA 186
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST---------------- 172
+ F M V V++ ++I G + + +LF +M
Sbjct: 187 RKFFDRMPERNV----VSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDI 242
Query: 173 --------VYEIVP--QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +P T + ++ + +AG LE A+ F MP + S WG +L+
Sbjct: 243 GDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVIS-WGIMLDG 300
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 187/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVV+W MI GYA+ G +EA+ +F M ++ P++ TLV VLSAC+SI AL F
Sbjct: 288 MVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESG-VNPDKITLVGVLSACASIGALDF 346
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +Y S R L V A+I+MY KCG + A++VF + K+ +SW+ +IS LA
Sbjct: 347 GKWLDTYASER-GLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALA 405
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G +++L LF M G V P+D++FI ++SAC H GLVD+G LF MS+ + +VP
Sbjct: 406 FHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQLFDLMSSSFGLVP 465
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +H++C+VD+ RAG + EA FI +MP + + V GALL AC+ RN ++ + + L
Sbjct: 466 KIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGALLGACQKRRNVDVSERVMHML 525
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + ++ G + + S FA RW+D+ ++R +R+ G+ K GCSWIE+ +
Sbjct: 526 LEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGVTKTPGCSWIEIENQV 579
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 135/227 (59%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D+VSW +MI GY+ G+ +AV +F EM + EP+E TLV++L AC + L
Sbjct: 187 ISEKDLVSWNSMISGYSRMGYAGDAVGLFGEM-RDAGFEPDEMTLVSILGACGDLGDLGL 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++ ++ ++ +++ VG+A+I MY KCGD+ A +VF+ + KD+++W+ +I+G A
Sbjct: 246 GSWIEGFV-VENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+ LFS M +GV PD +T + ++SAC+ G +D G L S E Q
Sbjct: 305 QNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYAS---ERGLQN 361
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
Y ++DMY + G L++A +MP + E S W A+++A H
Sbjct: 362 DIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVS-WNAMISALAFH 407
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 9/213 (4%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
PN T V AC+++ L+ GQ HS + + L V +++I MY +CG++G A
Sbjct: 123 RPNNFTYPFVFIACANLLVLNHGQCAHSGV-LKSGLCADGHVRHSLITMYSRCGELGCAR 181
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+ ++ KD++SW+++ISG + G A+ LF M G PD++T ++++ AC G
Sbjct: 182 RVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGAC--GD 239
Query: 159 LVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
L D GL + E+ + + ++ MYG+ G L A M ++ + W A
Sbjct: 240 LGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFDRM-VKKDVVTWNA 298
Query: 218 LLNA-CRIHRNDE---MFDPIRQELVNKKGVSV 246
++ + +DE +F +R+ VN +++
Sbjct: 299 MITGYAQNGVSDEAIILFSGMRESGVNPDKITL 331
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 183/288 (63%), Gaps = 3/288 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT MI + G EEA+++F++M+ + EP+ T+V +L+ C+++ AL G+
Sbjct: 243 EKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVVTLLTCCANLGALDQGE 301
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H Y R + + ++G A+I+MY KCG + +++VF + +D +W+ +I GLA N
Sbjct: 302 WIHQYAEQR-KMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATN 360
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + V PD VTFI ++SAC HGGLVD+G F AM VY+I P+ +H
Sbjct: 361 GQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRVEH 420
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ GRAGLL+EAE I ++PI + ++GALL AC+ H N EM + + + + +
Sbjct: 421 YSCLVNLLGRAGLLDEAERLIGDVPINKDAMPLFGALLTACKAHGNVEMSERLTKRICEQ 480
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
LMSN +A A RWED ++R ++ +KK GCS IEV
Sbjct: 481 DSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVK 528
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 132/281 (46%), Gaps = 42/281 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +V W M+ Y G AV++ ++ME++ P+ TLV ++ACS LS
Sbjct: 110 MPSRALVLWNMMVRCYIRCGRYSAAVALSEQMERSG-VTPDRVTLVTAVTACSRARDLSL 168
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ + ++ V NA+++MY K + A+++F + +++ISW+ ++SG
Sbjct: 169 GRRIHVYMDNVFGFNLP--VANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYG 226
Query: 121 M-------------------------------NGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ +GC +AL LF M + V PD T +
Sbjct: 227 LAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVT 286
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPI 208
L++ C++ G +DQG + + + A ++DMY + G +E++ E F R
Sbjct: 287 LLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTA-LIDMYSKCGHIEKSLEVFWRMQGR 345
Query: 209 EAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
+A + W A++ + R E+F +++ V GV+
Sbjct: 346 DA--TAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVT 384
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
+I A RG ++V+ ++ + + + T VL A + G+ H+ + +
Sbjct: 20 LIRTLARRGSFARVMAVYYDL-RARGLVADSFTYPFVLRAVGVLKLSVEGRKAHA-AAIK 77
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
G++++ MY G V IA +VF+ + + ++ W+ ++ G A+ L
Sbjct: 78 TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVAL 137
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQTQHYACVVDMY 190
M +GV PD VT + ++ACS + G + M V+ +P ++DMY
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN---ALLDMY 194
Query: 191 GRAGLLEEAEAFIREMP 207
+ LEEA +MP
Sbjct: 195 TKNDCLEEAVKLFEQMP 211
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 182/288 (63%), Gaps = 8/288 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSW +MI GYA+ G ++ +F+EM + +P+E T+ +VLSAC I AL
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V + + L +S N++I MY KCG V A ++F + +D++S++T+ISG
Sbjct: 411 SYWVLDIVREKNIKLGISGF--NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGF 468
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G++A++L M G+ PD VT+I +++ACSH GL+++G +FK++ P
Sbjct: 469 AANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PT 523
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GRAG L+EA+ I+ MP++ V+G+LLNA RIH+ + + +L
Sbjct: 524 VDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLF 583
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++G + L+SN +A RWED ++R+ +++ GLKK G SW+E
Sbjct: 584 ELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 35/191 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M YA++ +EA+++F +M + + P++ T V +S+CSSI +
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDDTTWVVTISSCSSIGDPTL 276
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--------------AY 106
+ I ++ + +++ V A+++M+ K G++ IA +F+ L AY
Sbjct: 277 ADSILRMIDQKH-IVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAY 335
Query: 107 ------------------KDMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTF 147
+D++SW+++I+G A NG +++LF MI + PD+VT
Sbjct: 336 TRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTI 395
Query: 148 IALISACSHGG 158
+++SAC H G
Sbjct: 396 ASVLSACGHIG 406
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75
YA+ G + A ++F++M + A+ N +++S C + + + + R ++
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWN-----SMISGCWKSGNETEAVVLFNMMPARNIIT 194
Query: 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
+++V Y K GD+ A + F+ + + ++SW+ + S A C ++AL LF M
Sbjct: 195 WTSMVTG-----YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249
Query: 136 IINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192
+ G+ PDD T++ IS+CS G L D L + V +T ++DM+ +
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT----ALLDMHAK 305
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G LE A E+ + W +++A
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISA 334
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 184/293 (62%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK----TKEAEPNEATLVNVLSACSSIS 56
+P +++V+W TMI +A G +EA+ +F+EM + T P++AT V VL AC+ +
Sbjct: 226 VPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLG 285
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
AL G++VH+YI + + +VGNA+I+MY KCG V A +VF+ + +D+ +++++I
Sbjct: 286 ALDAGRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMI 345
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
SGLAM+G G +AL LF M V P++VTF+ ++SAC H G ++ GL F AM+ ++ +
Sbjct: 346 SGLAMHGRGEEALALFGDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGV 405
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P +HY CVVDM GRAG L+EAE + MPI + +WG+LL ACR H + + + + +
Sbjct: 406 TPGIEHYGCVVDMLGRAGRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMR 465
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + LMSN +A R A ++R ++RR + K GCS IE++
Sbjct: 466 RMAEDED-DAGDYVLMSNMYAQEGRHGKAVQVRRQMRRGKVDKVPGCSLIEID 517
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 122/259 (47%), Gaps = 22/259 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DVVSWT M+ +A G EA +F M + +AC+ L
Sbjct: 124 PAPDVVSWTAMVTWHARLGLFREAAELFLAMADDGAVVVDAVAAAAAFAACAGAGELVLA 183
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGLA 120
+ VH + +++ + NA+++MY KCGD A++ F M+ K++++W+T+IS A
Sbjct: 184 REVHRRV-LEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHA 242
Query: 121 MNGCGRQALQLFSLMI-----INGVFPDDVTFIALISACSHGGLVDQG-----LILFKAM 170
G ++AL+LF M+ + PDD TF+A++ AC+ G +D G I+
Sbjct: 243 RAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGR 302
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE 229
+V ++DMY + G +E+A M + + ++++ +H R +E
Sbjct: 303 DAAAGVVGNA-----LIDMYAKCGAVEQAAEVFDAM-TRRDVYTYTSMISGLAMHGRGEE 356
Query: 230 ---MFDPIRQELVNKKGVS 245
+F +RQ V V+
Sbjct: 357 ALALFGDMRQARVRPNEVT 375
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 176/289 (60%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+VVSW+ M+ Y+ +EA+ +F +M EP +ATLV+VLSAC+ + +L
Sbjct: 325 IPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAG-VEPIDATLVSVLSACAQLCSLDV 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +++ + + ++ + NA I+M+ KCGDVG A ++F+ + K+++SW+T+I
Sbjct: 384 GTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIMAHG 443
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL LF NG+ PD+ T+I ++SACSHGGLV +G FK M VY I P+
Sbjct: 444 LHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIEPRA 503
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ G+ GLL+EA R MP+ A+ + WGALLNACR+H N E+ +L
Sbjct: 504 EHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLAG 563
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + LMS +A +W +R +R +KK GCS IEV+
Sbjct: 564 LDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVD 612
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 123/273 (45%), Gaps = 41/273 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWTT+I GYA G +EA VF M + PNE TLV SA + L
Sbjct: 192 MADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESVWPNEVTLVAAASAAGQMGLLGL 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I NL NA+++M+ KCG V A +VF+ + KD+ SW++++S A
Sbjct: 252 GRTVHQCIVESGGRMSVNLE-NALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Query: 121 MNGCG---------------------------------RQALQLFSLMIINGVFPDDVTF 147
CG +A+++F+ MI GV P D T
Sbjct: 311 K--CGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368
Query: 148 IALISACSHGGLVDQGLILFKA--MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
++++SAC+ +D G L+ +S E+ P + +DM+ + G + A
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSN--AFIDMFAKCGDVGAASRLFSN 426
Query: 206 MPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
M + S W ++ A +H E + QE
Sbjct: 427 MEDKNVVS-WNTMIMAHGLHGQPEEALHLFQEF 458
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 140/275 (50%), Gaps = 21/275 (7%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
TM+ G+ G A+++F+ + + + A + V +A +S S + +H
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPT---EAIHCVAFK 158
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
R + S L GNA+++MY + A ++F+ +A +D++SW+T+I G A G +A +
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWR 218
Query: 131 LFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV--- 186
+F M++ V+P++VT +A SA GL+ G TV++ + ++ V
Sbjct: 219 VFCRMVVAESVWPNEVTLVAAASAAGQMGLLGLG-------RTVHQCIVESGGRMSVNLE 271
Query: 187 ---VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
VDM+G+ G + A+ MPI+ +S W ++++A + E + +E+ N+
Sbjct: 272 NALVDMFGKCGCVAAAKEVFDGMPIKDVYS-WTSMVSAYAKCGDLENAAKLFKEIPNRNV 330
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
VS ++ M ++ A+ ++A +I +++ G++
Sbjct: 331 VS---WSCMVAAYSHANMPDEAIRIFNDMIAAGVE 362
>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 176/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS++ +I G + G+ E+A+ +F++M+ + A P T++ +L ACS ++AL
Sbjct: 373 MIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIA-PYLETMIALLPACSHLAALQH 431
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G H Y R + + NA+I+MY KCG + I+ ++F+ + +D+ISW+T+I G
Sbjct: 432 GTCCHGYTVVR-GFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYG 490
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL LF + G+ PDDVT IA++SACSH GLV +G F +MS + I P+
Sbjct: 491 IHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRM 550
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ RAG L+EA FI+ MP +WGALL ACR H+N EM + + +++
Sbjct: 551 AHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQL 610
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G F LMSN ++ RW+DA IR R G KK GCSW+E++
Sbjct: 611 LGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEIS 659
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 4/193 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K++ V W+ MIGGY +A++++ +M P ATL +L AC+ ++ L G+
Sbjct: 273 KKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGK 332
Query: 63 YVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + I + DL + VGN++I+MY KCG + A+ + + KD +S+S +ISG
Sbjct: 333 KLHCHMIKSGMDLDTT--VGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQ 390
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
NG +AL +F M +G+ P T IAL+ ACSH + G + V T
Sbjct: 391 NGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCC-HGYTVVRGFTNDTS 449
Query: 182 HYACVVDMYGRAG 194
++DMY + G
Sbjct: 450 ICNAIIDMYSKCG 462
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK VV W MI YA G ++++ ++ M + P T +L ACSS+ AL
Sbjct: 67 IPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPFLLKACSSLQALQL 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118
G+ +H++ LS+ V A+++MY KCG + A +FN +++ +D+++W+ +I+
Sbjct: 126 GRLIHTHAHI-LGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAA 184
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY---- 174
+ + Q + + M GV P+ T ++++ + QG KA+ Y
Sbjct: 185 FSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQG----KAIHAYYIRNF 240
Query: 175 ---EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V QT ++DMY + LL A + + + W A++ +H
Sbjct: 241 FFDNVVLQT----ALLDMYAKCHLLFYARKIFNTVNKKND-VCWSAMIGGYVLH 289
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 109/220 (49%), Gaps = 5/220 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W MI ++ + + +M++ PN +TLV++L +AL G+
Sbjct: 173 RDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAG-VTPNSSTLVSILPTIGQANALHQGKA 231
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y + + ++ A+++MY KC + A ++FN + K+ + WS +I G ++
Sbjct: 232 IHAYYIRNFFFD-NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290
Query: 124 CGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
AL L+ M+ I G+ P T ++ AC+ + +G L M + T
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++ MY + G+++ A F+ EM I + + A+++ C
Sbjct: 351 NS-LISMYAKCGIMDNAVGFLDEM-IAKDTVSYSAIISGC 388
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
SF + H + + D + + L ++ ++ +A VF+ + ++ W+ +I
Sbjct: 27 SFSPHPHPHRVSDSDAAATQLA-----RYHISRNEIQLARHVFDQIPKPSVVLWNMMIRT 81
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G +Q++ L+ M+ GV P + TF L+ ACS Q L L + + T I+
Sbjct: 82 YAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACS----SLQALQLGRLIHTHAHILG 137
Query: 179 QTQHY---ACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIH 225
+ ++ MY + G L +A+ + + + W A++ A H
Sbjct: 138 LSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFH 188
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 179/286 (62%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SWT MI G + +A+ VF EM+K++ +P++ L VLSAC+S+ AL G++
Sbjct: 275 RDVISWTIMISGLVQCKLPSKALEVFNEMQKSR-VKPDKVVLSTVLSACTSLGALESGRW 333
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH YI R + VG ++++MY KCG + ++ +F + K++ SW+ +I+G A++G
Sbjct: 334 VHEYIE-RKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHG 392
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR+AL+ F M+ +G+ P++V+FI ++ AC H GLV +GL LF++M Y++ P +HY
Sbjct: 393 HGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFESMKNSYKLSPWEEHY 452
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
VVD+ GRAGL+ EA + + MP+ WGALL+AC+ HR + I + + +
Sbjct: 453 GSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLSACQAHRQVDFSQQILRHVHELES 512
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G +AL+SN +A RW D ++R + GL+K+ G S IEVN
Sbjct: 513 SESGVYALLSNIYAVNHRWADVKRVRGLMSEKGLQKEPGSSVIEVN 558
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 130/243 (53%), Gaps = 25/243 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWT ++ + G EA+ + +M+ PNE TL VL AC + A
Sbjct: 174 MASRDVVSWTALVSAFVRGGRFAEALVLVGQMDVV----PNEGTLACVLVACGRLGAARA 229
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y+ DL + +VGNAV++MYVKC + +A +VF+ L +D+ISW+ +ISGL
Sbjct: 230 GKAVHGWYLRRESDLKL--IVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGL 287
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+AL++F+ M + V PD V ++SAC+ G ++ G V+E + +
Sbjct: 288 VQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESG-------RWVHEYIER 340
Query: 180 TQ-----HYAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----E 229
H +VDMY + G LE + + R+MP++ S W AL+N +H + E
Sbjct: 341 KGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLK-NLSSWNALINGFALHGHGREALE 399
Query: 230 MFD 232
FD
Sbjct: 400 HFD 402
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 40/281 (14%)
Query: 39 EPNEATLVNVLSACSSISALSF------GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
P+ TL L AC+ + A G+ VH+ ++ + V NA++ +Y CG
Sbjct: 104 RPDGYTLPATLKACARLGAGGDDGGLREGRQVHA-VAEKGGFLGRLPVRNALVTLYGVCG 162
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ G A +VF+ +A +D++SW+ ++S G +AL L M V P++ T ++
Sbjct: 163 ECGDARRVFDEMASRDVVSWTALVSAFVRGGRFAEALVLVGQM---DVVPNEGTLACVLV 219
Query: 153 ACSHGGLVDQGLIL----FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
AC G G + + S + IV V+DMY + L+ A + +
Sbjct: 220 ACGRLGAARAGKAVHGWYLRRESDLKLIVGNA-----VLDMYVKCEKLDLARRVFDRLLV 274
Query: 209 E--AEWSVWGALLNACRI-HRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDA 265
W++ + L C++ + E+F+ +++ V V + T L + T GA E
Sbjct: 275 RDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTV-LSACTSLGA--LESG 331
Query: 266 NKIRDEIRRMGLK-------------KKTGCSWIEVNPSIF 293
+ + I R G++ K GC +E + SIF
Sbjct: 332 RWVHEYIERKGIEWDVHVGTSLVDMYAKCGC--LETSLSIF 370
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++ SW +I G+A G EA+ F M + A PNE + + VL AC +
Sbjct: 373 MPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLA-PNEVSFIIVLGACCHSGLVQE 431
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI-SWSTVIS 117
G + + Y LS +V+++ + G + A V + + + +W ++S
Sbjct: 432 GLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGALLS 489
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 112/285 (39%), Positives = 183/285 (64%), Gaps = 1/285 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWT MI GYA+ E + +F+ M+ PNE T+V+VLSAC+ ++AL
Sbjct: 267 MPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEE 326
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++ H++I + S +G A+I+MY KCG +A+++F+ L K++ +W+ +I+GL
Sbjct: 327 GRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGL 386
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A+NG R ++ +F M +G P+ +TF+ +++AC+HGGLVD+G F++M++ + P+
Sbjct: 387 AVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPE 446
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM GRAGLLEEAE IR MP+ + + GALL ACR+H+ ++ ++ E++
Sbjct: 447 AKHYGCMVDMLGRAGLLEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEIL 506
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
G L+S+ +A A +W DA R +++ G+ K G S
Sbjct: 507 GLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 19/253 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ M+G YA G + A +F EM NV+S S I+ +
Sbjct: 172 MPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGR---------NVVSWNSMITGFAR 222
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ ++ V NLV N ++ Y G++ A ++F+ + KD++SW+ +ISG
Sbjct: 223 HGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGY 282
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A C + L+LF M + V P++VT ++++SAC+H +++G A +++V
Sbjct: 283 AQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGR-WAHAFIDKHKMVL 341
Query: 179 QTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFD 232
++ A ++DMY + G + A + + S W AL+ ++ + ++F+
Sbjct: 342 DSEFNLGAALIDMYSKCGRTDLAVKIFHSLD-QKNVSAWNALITGLAVNGDVRSSIDVFE 400
Query: 233 PIRQELVNKKGVS 245
+R+ G++
Sbjct: 401 QMRRSGEKPNGIT 413
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 76 VSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
V++LV N ++ YVKCG++G A +VF + ++ +SWS ++ A G A ++F
Sbjct: 143 VADLVTWNTMLGGYVKCGEIGEARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDE 202
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
M G + V++ ++I+ + GL+ +F M V + +V Y G
Sbjct: 203 MPAIG--RNVVSWNSMITGFARHGLLPLARKMFDEMP-----VRNLVSWNTMVRGYAVNG 255
Query: 195 LLEEAEAFIREMP 207
+ +A MP
Sbjct: 256 EMNDARELFDRMP 268
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++VSW++MI GYA G +EA+ +F +M + +P+ +V VL +C+ + AL
Sbjct: 270 MLEKNIVSWSSMIQGYASNGLPKEALDLFFKM-LNEGLKPDCYAMVGVLCSCARLGALEL 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + + I+ L ++++G A+I+MY KCG + A +VF + KD + W+ ISGLA
Sbjct: 329 GDWASNLINGNEFLD-NSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLA 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + AL LF M +G+ PD TF+ L+ AC+H GLV++G F +M V+ + P+
Sbjct: 388 MSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEI 447
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA I+ MP+EA VWGALL CR+HR+ ++ + + ++L+
Sbjct: 448 EHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLIA 507
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A + +WE+A KIR + G+KK G SWIEV+
Sbjct: 508 LEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVD 556
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ SWT I GY G C EA+ +F+ + + P+ +LV VLSAC L
Sbjct: 169 IPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMG-LRPDSFSLVEVLSACKRTGDLRS 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ YI T + + V A+++ Y KCG++ A VF+ + K+++SWS++I G A
Sbjct: 228 GEWIDEYI-TENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYA 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++AL LF M+ G+ PD + ++ +C+ G ++ G ++ E + +
Sbjct: 287 SNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLING-NEFLDNS 345
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G ++ A R M + + VW A ++
Sbjct: 346 VLGTALIDMYAKCGRMDRAWEVFRGMR-KKDRVVWNAAISG 385
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 4/217 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ + TMI G +E++ ++ M K + P+ T VL AC+ + G +
Sbjct: 72 NIFLFNTMIRGLVLNDCFQESIEIYHSMRK-EGLSPDSFTFPFVLKACARVLDSELGVKM 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + + V ++IN+Y KCG + A +VF+ + K+ SW+ ISG G
Sbjct: 131 HSLV-VKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
R+A+ +F ++ G+ PD + + ++SAC G + G + + + T +V
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYI-TENGMVRNVFVAT 248
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VD YG+ G +E A + M +E W +++
Sbjct: 249 ALVDFYGKCGNMERARSVFDGM-LEKNIVSWSSMIQG 284
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 97/201 (48%), Gaps = 10/201 (4%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
S L +++H+ + R L + N V+ G+ + ++ + ++ ++T
Sbjct: 20 FSCLKHLKHIHAAL-LRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I GL +N C +++++++ M G+ PD TF ++ AC+ ++D L + K S V
Sbjct: 79 MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACAR--VLDSELGV-KMHSLVV 135
Query: 175 EIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMF 231
+ + + ++++Y + G ++ A ++P + ++ W A ++ + + E
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIP-DKNFASWTATISGYVGVGKCREAI 194
Query: 232 DPIRQELVNKKGVSVGTFALM 252
D R+ L + G+ +F+L+
Sbjct: 195 DMFRRLL--EMGLRPDSFSLV 213
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 182/288 (63%), Gaps = 8/288 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSW +MI GYA+ G ++ +F+EM + +P+E T+ +VLSAC I AL
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V + + L +S N++I MY KCG V A ++F + +D++S++T+ISG
Sbjct: 411 SYWVLDIVREKNIKLGISGF--NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGF 468
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G++A++L M G+ PD VT+I +++ACSH GL+++G +FK++ P
Sbjct: 469 AANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PT 523
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ GRAG L+EA+ I+ MP++ V+G+LLNA RIH+ + + +L
Sbjct: 524 VDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLF 583
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++G + L+SN +A RWED ++R+ +++ GLKK G SW+E
Sbjct: 584 ELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVE 631
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 100/191 (52%), Gaps = 35/191 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW M YA++ +EA+++F +M + + P++ T V +S+CSSI +
Sbjct: 218 MPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGITPDDTTWVVTISSCSSIGDPTL 276
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--------------AY 106
+ I ++ + +++ V A+++M+ K G++ IA +F+ L AY
Sbjct: 277 ADSILRMIDQKH-IVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAY 335
Query: 107 ------------------KDMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTF 147
+D++SW+++I+G A NG +++LF MI + PD+VT
Sbjct: 336 TRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTI 395
Query: 148 IALISACSHGG 158
+++SAC H G
Sbjct: 396 ASVLSACGHIG 406
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75
YA+ G + A ++F++M + A+ N +++S C + + + + R ++
Sbjct: 140 YAKNGQVDLARNLFEQMAERTLADWN-----SMISGCWKSGNETEAVVLFNMMPARNIIT 194
Query: 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
+++V Y K GD+ A + F+ + + ++SW+ + S A C ++AL LF M
Sbjct: 195 WTSMVTG-----YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249
Query: 136 IINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192
+ G+ PDD T++ IS+CS G L D L + V +T ++DM+ +
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKT----ALLDMHAK 305
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G LE A E+ + W +++A
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISA 334
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 186/293 (63%), Gaps = 16/293 (5%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K++VVSW TM+ +A G EEA+++FQEM+ P++AT V L AC+ + AL
Sbjct: 214 MPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAA-VRPDDATFVAALGACAQLGALD 272
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H+Y+ R S +VGNA+++MY KCG V A +VF+ +A +D+ +++++I GL
Sbjct: 273 TGRWLHAYMG-RMGHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGL 331
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G AL LF+ M GV P++VT + +++AC H GLV++GL AM P+
Sbjct: 332 AMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPE-----PR 386
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVDM GRAG L++AE I MP+ ++ +W +LL ACR H + E R E V
Sbjct: 387 IEHYGCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAACRAHGDVE-----RAERV 441
Query: 240 NKKGVS---VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ V+ G + LMSNT+A R +A K+R ++RR + K GCS IE++
Sbjct: 442 MRRRVADADAGDYVLMSNTYASNGRHGEAVKVRGQMRRNEIDKVPGCSLIEID 494
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 3/197 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVS T M+ G+A GF +EAV +F M + + SAC+ I L+ G+
Sbjct: 115 RDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCVAIDAVAAAAAFSACAQIGDLALGRE 174
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGLAMN 122
H ++ R +++ + NA+++MY KCGD A + F M K+++SW+T++S A
Sbjct: 175 AHRRVAER-KVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARA 233
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL LF M V PDD TF+A + AC+ G +D G L M +
Sbjct: 234 GELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVG 293
Query: 183 YACVVDMYGRAGLLEEA 199
A ++DMY + G +++A
Sbjct: 294 NA-LLDMYAKCGAVDQA 309
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G +EA +F +M K E + A +V++L+AC+ +LS
Sbjct: 589 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSL 647
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H Y+ R +L S V NA+I+M+ KCG V A VF+ KD +SW+++I G
Sbjct: 648 GKRIHRYVRKR-NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 706
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL+LF+ M G PD VT I ++SAC+H G VD+G F M Y I+PQ
Sbjct: 707 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 766
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 767 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 826
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +A++SN +A A +W D K R +++ G +K G SW+E+N
Sbjct: 827 KLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 876
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW T++ GY + G E A +FQ M + NV+S + +S
Sbjct: 527 MPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----------NVVSWSTMVSG--- 572
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 573 ---------------------------YCKKGDLEMARVIFDKMPSKNLVTWTIMVSACA 605
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M V D +++++AC+ G + G + + + + T
Sbjct: 606 QKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRK-RNLGRST 664
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++DM+ + G + A+ ++ + W +++ +H + E+F ++Q
Sbjct: 665 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 724
Query: 237 ELVNKKGVSV 246
+ N V++
Sbjct: 725 QGFNPDAVTM 734
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 22/222 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ S T +GG +A++ F M + + L+ LSA + ++
Sbjct: 405 LPRQHHGSAPTALGGAPR-----DALAAFSAMPRRDSF--TYSFLIKALSA----AGVAP 453
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHS++ + VGNA+I+ Y K G A +VF+ + +D++SW+T ++ +
Sbjct: 454 VRAVHSHV-VKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMV 512
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +LF M D V++ ++ + G V+ LF+ M +
Sbjct: 513 REGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVS--- 565
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ +V Y + G LE A +MP + W +++AC
Sbjct: 566 --WSTMVSGYCKKGDLEMARVIFDKMPSK-NLVTWTIMVSAC 604
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G +EA +F +M K E + A +V++L+AC+ +LS
Sbjct: 282 MPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM-KEASVELDVAAVVSILAACAESGSLSL 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H Y+ R +L S V NA+I+M+ KCG V A VF+ KD +SW+++I G
Sbjct: 341 GKRIHRYVRKR-NLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGF 399
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL+LF+ M G PD VT I ++SAC+H G VD+G F M Y I+PQ
Sbjct: 400 AMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQ 459
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 460 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELS 519
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +A++SN +A A +W D K R +++ G +K G SW+E+N
Sbjct: 520 KLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELN 569
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 108/250 (43%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW T++ GY + G E A +FQ M + NV+S + +S
Sbjct: 220 MPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-----------NVVSWSTMVSG--- 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 266 ---------------------------YCKKGDLEMARVIFDKMPSKNLVTWTIMVSACA 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M V D +++++AC+ G + G + + + + T
Sbjct: 299 QKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRK-RNLGRST 357
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++DM+ + G + A+ ++ + W +++ +H + E+F ++Q
Sbjct: 358 HVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQ 417
Query: 237 ELVNKKGVSV 246
+ N V++
Sbjct: 418 QGFNPDAVTM 427
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 17/203 (8%)
Query: 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL 79
G +A++ F M + + L+ LSA + ++ + VHS++ +
Sbjct: 112 GAPRDALAAFSAMPRRDSF--TYSFLIKALSA----AGVAPVRAVHSHV-VKLGSVEDTF 164
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
VGNA+I+ Y K G A +VF+ + +D++SW+T ++ + G +LF M
Sbjct: 165 VGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK- 223
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
D V++ ++ + G V+ LF+ M + ++ +V Y + G LE A
Sbjct: 224 ---DTVSWNTILDGYTKAGEVEAAFELFQRMPERNVV-----SWSTMVSGYCKKGDLEMA 275
Query: 200 EAFIREMPIEAEWSVWGALLNAC 222
+MP + W +++AC
Sbjct: 276 RVIFDKMPSK-NLVTWTIMVSAC 297
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 181/289 (62%), Gaps = 4/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VVSWT++I G EA+ F++M+++ +PN TL++VLSAC+ I AL G+
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMKES--MKPNSVTLISVLSACARIGALMRGKE 521
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H++ + R + + NA+++MYV+CG A+ FN KD+ +W+ +++G A G
Sbjct: 522 IHAH-ALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQG 579
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ A++LF M+ + PD++TFI+L+ ACS G+V +GL F M Y + P +HY
Sbjct: 580 QAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHY 639
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
ACVVD+ GRAG L++A FI++MPI + ++WGALLNACRIHRN E+ + + + K
Sbjct: 640 ACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDN 699
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
SVG + L+ N +AG W+ +K+R +R GL GCSW+E+ +
Sbjct: 700 KSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV SW ++GGYA+ G +EA++++ M E PN T +VL C+ +S ++
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIAR 216
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ R+ VGNA+I MYVKCGD+ A +F+ + +D ISW+ +ISG
Sbjct: 217 GKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYF 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVP 178
NG G + L+LFS+M V PD +T + SAC L+D + V E
Sbjct: 276 ENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LLDNERLGRGVHGYVVKSEFGG 332
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
++ MY G LEEAE M + S W A++ + H+
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS-WTAMIASLVSHK 379
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 133/255 (52%), Gaps = 7/255 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD +SW MI GY E G E + +F M + +P+ T+ V SAC +
Sbjct: 259 MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMTTVASACELLDNERL 317
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y+ + + +S + N++I MY G + A VF+ + KD++SW+ +I+ L
Sbjct: 318 GRGVHGYVVKSEFGGDIS--MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ +A++ + +M + G+ PD++T ++++SAC+ G +D G+ L + ++ +V
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSH 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPIRQEL 238
++DMY + ++ A R + + S W +L+ RI +R+ E RQ
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSFEALLFFRQMK 493
Query: 239 VNKKGVSVGTFALMS 253
+ K SV +++S
Sbjct: 494 ESMKPNSVTLISVLS 508
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
+G E+A+ + M + + E E + +L C A G V+ +S+
Sbjct: 75 QGNLEQAMKRLESMLELR-IEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR 133
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
L GNA+++M+V+ G++ A VF ++ +D+ SW+ ++ G A GC +AL L+ M+
Sbjct: 134 L-GNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
+ P+ TF +++ C+ + +G + A + ++ MY + G +
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEI-HAHVIRFGFESDVDVGNALITMYVKCGDISN 251
Query: 199 AEAFIREMPIEAEWSVWGALLNA 221
A +MP S W A+++
Sbjct: 252 ARMLFDKMPKRDRIS-WNAMISG 273
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+DV +W ++ GYA++G + AV +F +M + E P+E T +++L ACS ++ G
Sbjct: 562 KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCACSKSGMVTEGL 620
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM-ISWSTVISGLAM 121
+ + +Y+L+ + V+++ + G + A +DM I I G +
Sbjct: 621 EYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI-----QDMPIRPDAAIWGALL 675
Query: 122 NGC 124
N C
Sbjct: 676 NAC 678
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 187/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV+SWT+++ GYA+ EE++ +F +M T P++ + ++LSAC+ ++ L F
Sbjct: 425 MLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTG-VNPDQFIVASILSACAELTLLEF 483
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH +I + L S V N+++ MY KCG + A +F + KD+I+W+ +I G
Sbjct: 484 GKQVHLDFIKS--GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGY 541
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG GR +L+ + M+ +G PD +TFI L+ ACSH GLVD+G F+ M+ VY I P
Sbjct: 542 AQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPG 601
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC++D++GR+G L+EA+ + +M ++ + +VW +LL+ACR+H N E+ + L
Sbjct: 602 PEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLF 661
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++ + ++SN ++ + +W D KIR ++ G+ K+ GCSW+E+N +
Sbjct: 662 ELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRV 714
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 10/221 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++ V WT M+ GYA+ G +AV F+ M + E N+ T +L+ACSS+ A FG+
Sbjct: 227 RKNHVLWTAMVTGYAQNGDGYKAVEFFRYMH-AQGVECNQYTFPTILTACSSVLARCFGE 285
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH +I + + V +A+++MY KCGD+ A + + D++SW++++ G +
Sbjct: 286 QVHGFI-VKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL--ILFKAMSTVYEIVPQT 180
G +AL+LF M + DD TF ++++ C G + + + ++ K Y++V
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA 404
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + G ++ A +M +E + W +L+
Sbjct: 405 -----LVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG 439
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 12/222 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC--SSISAL 58
M DVVSW +++ G+ G EEA+ +F+ M + + ++ T +VL+ C SI+
Sbjct: 326 MEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMH-GRNMKIDDYTFPSVLNCCVVGSINPK 384
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
S VH I + LV NA+++MY K GD+ A VF + KD+ISW+++++G
Sbjct: 385 S----VHGLI-IKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTG 439
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A N ++L++F M + GV PD +++SAC+ L++ G + + + +
Sbjct: 440 YAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVH--LDFIKSGLR 497
Query: 179 QTQH-YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+Q Y +V MY + G L++A+A M ++ + W A++
Sbjct: 498 WSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 59/263 (22%)
Query: 1 MPKRDVVSWTTMIGGYAE--------------------------RGFCE-----EAVSVF 29
MP++D SW TMI Y G+C+ EA +F
Sbjct: 91 MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150
Query: 30 QEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV 89
+ M + + + ++ TL +VL CSS+ + G+ +H ++ + + V +++MY
Sbjct: 151 RSM-RLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV-VKNGFEGNVFVVTGLVDMYA 208
Query: 90 KCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
KC V A +F L + K+ + W+ +++G A NG G +A++ F M GV + TF
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268
Query: 148 IALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
+++ACS HG +V G S VY + +VDMY + G L
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKSGF-----GSNVYV-------QSALVDMYAKCGDL 316
Query: 197 EEAEAFIREMPIEAEWSVWGALL 219
+ A+ + M + S W +L+
Sbjct: 317 KNAKNMLETMEDDDVVS-WNSLM 338
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 181/289 (62%), Gaps = 4/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VVSWT++I G EA+ F++M+++ +PN TL++VLSAC+ I AL G+
Sbjct: 464 KNVVSWTSLILGLRINNRSFEALLFFRQMKES--MKPNSVTLISVLSACARIGALMRGKE 521
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H++ + R + + NA+++MYV+CG A+ FN KD+ +W+ +++G A G
Sbjct: 522 IHAH-ALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQG 579
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ A++LF M+ + PD++TFI+L+ ACS G+V +GL F M Y + P +HY
Sbjct: 580 QAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHY 639
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
ACVVD+ GRAG L++A FI++MPI + ++WGALLNACRIHRN E+ + + + K
Sbjct: 640 ACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDN 699
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
SVG + L+ N +AG W+ +K+R +R GL GCSW+E+ +
Sbjct: 700 KSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKV 748
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV SW ++GGYA+ G +EA++++ M E PN T +VL C+ +S ++
Sbjct: 158 MSERDVFSWNVLVGGYAKAGCFDEALNLYHRM-LWAEIRPNVYTFPSVLKTCAGVSDIAR 216
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ R+ VGNA+I MYVKCGD+ A +F+ + +D ISW+ +ISG
Sbjct: 217 GKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYF 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVP 178
NG G + L+LFS+M V PD +T + SAC L+D + V E
Sbjct: 276 ENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LLDNERLGRGVHGYVVKSEFGG 332
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
++ MY G LEEAE M + S W A++ + H+
Sbjct: 333 DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS-WTAMIASLVSHK 379
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 133/255 (52%), Gaps = 7/255 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD +SW MI GY E G E + +F M + +P+ T+ V SAC +
Sbjct: 259 MPKRDRISWNAMISGYFENGGGLEGLELFSMMRELS-VDPDLITMTTVASACELLDNERL 317
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y+ + + +S + N++I MY G + A VF+ + KD++SW+ +I+ L
Sbjct: 318 GRGVHGYVVKSEFGGDIS--MNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ +A++ + +M + G+ PD++T ++++SAC+ G +D G+ L + ++ +V
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSH 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPIRQEL 238
++DMY + ++ A R + + S W +L+ RI +R+ E RQ
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSFEALLFFRQMK 493
Query: 239 VNKKGVSVGTFALMS 253
+ K SV +++S
Sbjct: 494 ESMKPNSVTLISVLS 508
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
+G E+A+ + M + + E E + +L C A G V+ +S+
Sbjct: 75 QGNLEQAMKRLESMLELR-IEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVR 133
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
L GNA+++M+V+ G++ A VF ++ +D+ SW+ ++ G A GC +AL L+ M+
Sbjct: 134 L-GNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWA 192
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
+ P+ TF +++ C+ + +G + A + ++ MY + G +
Sbjct: 193 EIRPNVYTFPSVLKTCAGVSDIARGKEI-HAHVIRFGFESDVDVGNALITMYVKCGDISN 251
Query: 199 AEAFIREMPIEAEWSVWGALLNA 221
A +MP S W A+++
Sbjct: 252 ARMLFDKMPKRDRIS-WNAMISG 273
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 7/123 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+DV +W ++ GYA++G + AV +F +M + E P+E T +++L ACS ++ G
Sbjct: 562 KKDVTAWNILLTGYAQQGQAKLAVELFDKMLEL-EIHPDEITFISLLCACSKSGMVTEGL 620
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM-ISWSTVISGLAM 121
+ + +Y+L+ + V+++ + G + A +DM I I G +
Sbjct: 621 EYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFI-----QDMPIRPDAAIWGALL 675
Query: 122 NGC 124
N C
Sbjct: 676 NAC 678
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 176/292 (60%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V SW +I GYA+ G E + F+ M PN+ATL VLSAC+ + A F
Sbjct: 144 MLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDF 203
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y V V NA+I+MY KCG + IA++VF + +D+ISW+T+I+GLA
Sbjct: 204 GKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 263
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL LF M G+ PD VTF+ ++ AC H GLV+ GL F +M T + I PQ
Sbjct: 264 AHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQI 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H CVVD+ RAG L +A FI +MP++A+ +W LL A ++++ + + +EL+
Sbjct: 324 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIK 383
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + F ++SN + A R++DA +++ +R G KK+ G SWIE + +
Sbjct: 384 LEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGISWIETDDGL 435
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 45/226 (19%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+V W TM+ GY E G EA S+F +M C + +
Sbjct: 83 PERDIVLWNTMVAGYIEMGNMMEARSLFDQM------------------PCRDVMSW--- 121
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
N V+ Y GD+ +VF+ + +++ SW+ +I G A
Sbjct: 122 --------------------NTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQ 161
Query: 122 NGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQ 179
NG + L F M+ G VFP+D T ++SAC+ G D G + K + Y V
Sbjct: 162 NGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDV 221
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A ++DMYG+ G +E A + + + W ++N H
Sbjct: 222 NVKNA-LIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAH 265
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV+W+TMI GY+ G E++ +F+ M+ T +PNE TLV VLSAC+ + +
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQLGSDEL 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + SYI ++ L +++ +G+A+I+MY KCG V A VF+ + K +I+W+++I GLA
Sbjct: 329 GEQIGSYIESQ-TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLA 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-PQ 179
+NG A+ L+ M+ +GV P+++TF+AL++AC+H GLVD+G+ F+ M + PQ
Sbjct: 388 LNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQ 447
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H AC+VD+ ++G L EA FI +M +E +W LL+ACR H + E+ +LV
Sbjct: 448 VEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLV 507
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + L+SN +A A W D +IRD +R L+K + SWIE++
Sbjct: 508 VLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 557
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ SW +MI YA G +EA+++F +M + + A PN T+ V S C+ L
Sbjct: 170 MPRKTSASWNSMIACYAHGGEFQEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLET 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +++S DL + +V A++ MYVKC + A + F+ + +D+++WST+I+G +
Sbjct: 229 GRRAKAWVSEE-DLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYS 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + ++SAC+ G + G + + + + +P T
Sbjct: 287 HNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIES--QTLPLT 344
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY + G + A M
Sbjct: 345 SYLGSALIDMYTKCGHVARARDVFHRM 371
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y + GDV A ++F+ + K SW+++I+ A G ++AL LF M+ G
Sbjct: 148 NCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
P+ +T + S C+ G ++ G KA + ++ H A +++MY + ++EA
Sbjct: 208 PNAITITTVFSICAKTGDLETGR-RAKAWVSEEDLQNVIVHTA-LMEMYVKCRAIDEARR 265
Query: 202 FIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253
MP + W ++ + R H + E+F+ R + N K V ++S
Sbjct: 266 EFDRMP-RRDVVAWSTMIAGYSHNGRPHESLELFE--RMKATNCKPNEVTLVGVLS 318
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 182/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + ++A+ VF+ M + +PN +TL +VL CS++SAL F
Sbjct: 197 MPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGF 256
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + LS + VG ++++MY KCGD+ A +VF+ ++ KD+++W+ +ISG A
Sbjct: 257 GRQVHQWC-MKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYA 315
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G QA++LF M GV PD +T +A+++AC H GL D G+ F+ M Y+I PQ
Sbjct: 316 QHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQI 375
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAGLLE A I MP E S +G LL ACR+++N E + ++L+
Sbjct: 376 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 435
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + ++N +A A++W D +++R ++ + K G SW+E+
Sbjct: 436 QDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIK 484
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 10/157 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV SW TM+ G ++ G EEA ++F+ M N +V L ACS +
Sbjct: 103 MPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWN--AMVAAL-ACSGDMGAAE 159
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ ++ T ++ A+++ Y+ G+V A++ F + ++++SW+ V++G
Sbjct: 160 DLFRNAPEKT------DAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYV 213
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSH 156
N AL++F M+ + + P+ T +++ CS+
Sbjct: 214 KNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSN 250
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + CGD+ A +VF+ + KD+ SW+T++SGL+ NG +A +F +M +
Sbjct: 81 NTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNA- 139
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ A+++A + G + LF+ + + T +V Y G +++A
Sbjct: 140 ---VSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWT----AMVSGYMDTGNVQKAME 192
Query: 202 FIREMPIE 209
F MP+
Sbjct: 193 FFGAMPVR 200
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 185/299 (61%), Gaps = 14/299 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK------------TKEAEPNEATLVNV 48
MP+++ VSW +I GY + G A +F EM + +P+E +V++
Sbjct: 263 MPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVSL 322
Query: 49 LSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+SACS + +L ++V Y+ + D+ ++++ A+I+M KCG + A ++F + +
Sbjct: 323 MSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIA-ALIDMNAKCGSMDRATKLFEEMPKR 381
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
D+IS+ +++ GL+++GCG QA+ LFS M+ G+ PDDV F +++ACS GLVD+G F
Sbjct: 382 DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYF 441
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
++M T Y IVP HYAC+VD+ GRAG L+EA ++ MP+E WGALL AC++H +
Sbjct: 442 ESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCD 501
Query: 228 DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
E+ + + +L + + G + L+SN +A A++W D + +R+++R G++K GCSWI
Sbjct: 502 IELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 560
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 46/246 (18%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W T I GY+E VS+F M+++ +A P++ T +++ ACS + + G H
Sbjct: 136 TVLWNTYIKGYSENYSVSLTVSLFIRMKRS-DAVPDKFTYPSLIKACSKVCGVKEGVAFH 194
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA----- 120
+ R + V ++I++Y KCG++ A +VF+ + ++++SW+ +I+G A
Sbjct: 195 GS-AVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDL 253
Query: 121 ---------------------MNG---CG--RQALQLF-------------SLMIINGVF 141
++G CG R A ++F S +I V
Sbjct: 254 VEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVK 313
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
PD+ ++L+SACS G ++ + + V + A ++DM + G ++ A
Sbjct: 314 PDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATK 373
Query: 202 FIREMP 207
EMP
Sbjct: 374 LFEEMP 379
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 75/179 (41%), Gaps = 5/179 (2%)
Query: 28 VFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87
F + T + +++ +L AC++ S L + VH+ I R L + + + + +
Sbjct: 59 TFPDYLPTLRSFDTTSSISTLLKACTTTSTL---EQVHARI-IRKGLHQDHFIISQFLTL 114
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ VFN ++ + W+T I G + N + LF M + PD T+
Sbjct: 115 CNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTY 174
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+LI ACS V +G + F + + ++D+YG+ G + A EM
Sbjct: 175 PSLIKACSKVCGVKEG-VAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEM 232
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 190/292 (65%), Gaps = 6/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWTT+I GY + G +EA+ +F EM +T PNE TL + L+AC+++ AL
Sbjct: 209 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACANLVALDQ 267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN---MLAYKDMISWSTVIS 117
G+++H YI + ++ ++ + ++++MY KCG++ A +VF+ L K + W+ +I
Sbjct: 268 GRWIHVYID-KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIG 325
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G AM+G ++A+ LF M + V P+ VTF+AL++ACSHG LV++G FK+M++ Y I
Sbjct: 326 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIE 385
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C+VD+ GR+GLL+EAE + MP+ + ++WGALL ACRIH++ E I +
Sbjct: 386 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 445
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +G L++N ++ + +W++A +R +I G KK GCS IE+N
Sbjct: 446 IKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELN 497
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 131/288 (45%), Gaps = 36/288 (12%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+PK DV + TMI +A ++ +F M + PN T V V AC + +
Sbjct: 75 IPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVL 134
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMY------------------------------- 88
G+ + + + + L + V NA+I MY
Sbjct: 135 EGEQIRVH-AIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGY 193
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
V G++G A ++F+ ++ +D++SW+T+I+G GC ++AL LF M+ G P++ T
Sbjct: 194 VGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLA 253
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE-EAEAFIREMP 207
+ ++AC++ +DQG + + EI + A ++DMY + G ++ A+ F E
Sbjct: 254 SALAACANLVALDQGRWIHVYIDKS-EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYG 312
Query: 208 IEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFALMSN 254
++ + W A++ +H ++ E D Q V K + TF + N
Sbjct: 313 LKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLN 360
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 176/289 (60%), Gaps = 1/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+VV W MI GYA+ +A+ VF+ M++ PN+ TLV+VL AC+ + AL G++
Sbjct: 158 RNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKW 217
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ +IS R ++++ +GNA+ +MY KCG + A +VFN + +D+ISWS +I GLAM G
Sbjct: 218 IDGFISRR-EMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYG 276
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A F M+ G P+DV F+ L++AC+H GLV +GL F M Y + P+ +HY
Sbjct: 277 HADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHY 336
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
CVVD+ RAG L++AE I MP++ +WGALL CRI+R+ + Q ++
Sbjct: 337 GCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDS 396
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G++ ++N ++ R +DA K R +R G+ K GCSWIEV+ ++
Sbjct: 397 DHSGSYVYLANVYSSMGRLDDAAKCRLRMRENGVLKTPGCSWIEVDNTV 445
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 6/187 (3%)
Query: 24 EAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
A+ F + A P+E T +VL AC+ ++ + GQ +H+ + T+ + V N
Sbjct: 73 HAIQFFNHQVSSPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMV-TKQGFESNLFVRN 131
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTVISGLAMNGCGRQALQLFSLM-IING 139
++I+MY K G + +A +F+ + +D ++ W+ +I+G A N A+++F +M G
Sbjct: 132 SLIDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGG 191
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
V P+DVT ++++ AC+H G +D G + +S E+ + DMY + G + EA
Sbjct: 192 VVPNDVTLVSVLPACAHLGALDLGKWIDGFISR-REMALGLFLGNALADMYAKCGCITEA 250
Query: 200 EAFIREM 206
+M
Sbjct: 251 RRVFNKM 257
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW+ +I G A G +EA F EM E +PN+ + +L+AC+ +
Sbjct: 257 MEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGE-KPNDVVFMGLLTACTHAGLVKK 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G + + Y +S V+++ + G++ A + + + K ++I W ++ G
Sbjct: 316 GLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLGGC 375
Query: 120 AM---NGCGRQALQ 130
+ +G G++ +Q
Sbjct: 376 RIYRDSGRGQRVVQ 389
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 186/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ +SWTTMI GY + +EA+ +F EM+ + + EP+ +L N LSAC+ + AL
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS-DVEPDNVSLANALSACAQLGALEQ 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY++ + + + +++G +I+MY KCG++ A++VF + K + +W+ +ISG A
Sbjct: 266 GKWIHSYLN-KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A+ F M G+ P+ +TF A+++ACS+ GLV++G ++F +M Y + P
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EA+ FI+EMP++ +WGALL ACRIH+N E+ + I + L+
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA 444
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + +N A +W+ A + R ++ G+ K GCS I +
Sbjct: 445 IDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISL 492
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 41/257 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D W MI G++ E ++ ++Q M A N T ++L ACS++SA
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRM-LCSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 63 YVHSYISTR-YD---LSVSNLVG--------------------------NAVINMYVKCG 92
+H+ I+ Y+ +V++L+ N+VI YVK G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ IA+ +F +A K+ ISW+T+ISG ++ALQLF M + V PD+V+ +S
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-VDMYGRAGLLEEA-EAF--IREMPI 208
AC+ G ++QG + ++ + CV +DMY + G +EEA E F I++ +
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTR--IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 313
Query: 209 EAEWSVWGALLNACRIH 225
+A W AL++ H
Sbjct: 314 QA----WTALISGYAYH 326
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD V WT +I G G + VF+EM+ K EPNE T V VLSAC+ + AL
Sbjct: 217 MGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQ-VKGVEPNEVTFVCVLSACAQLGALEL 275
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ + + V+ V A+INMY +CGD+ A +F+ + KD+ +++++I GLA
Sbjct: 276 GRWIHAYMR-KCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLA 334
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +A++LFS M+ V P+ +TF+ +++ACSHGGLVD G +F++M ++ I P+
Sbjct: 335 LHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEV 394
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G LEEA FI M +EA+ + +LL+AC+IH+N M + + + L
Sbjct: 395 EHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSE 454
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G+F ++SN +A RW A ++R+++ + G+ K+ GCS IEVN +I
Sbjct: 455 HYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAI 506
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T++I G+ G +A+++F +M + N A + +L AC AL G+ V
Sbjct: 89 NVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYA-VTAMLKACVLQRALGSGKEV 147
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCG----------------------------DVGI 96
H + + L + + ++ +Y KCG D G+
Sbjct: 148 HGLV-LKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGM 206
Query: 97 ---AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
AI+VFN + +D + W+ VI GL NG + L++F M + GV P++VTF+ ++SA
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSA 266
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+ G ++ G + M V + A +++MY R G ++EA+A + ++ + S
Sbjct: 267 CAQLGALELGRWIHAYMRKCGVEVNRFVAGA-LINMYSRCGDIDEAQALFDGVRVK-DVS 324
Query: 214 VWGALLNACRIHRND----EMFDPIRQELVNKKGVS 245
+ +++ +H E+F + +E V G++
Sbjct: 325 TYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGIT 360
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 62 QYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H + I TR S V ++ +Y K + AI++F ++ ++++I G
Sbjct: 44 QSIHCHAIKTR--TSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFV 101
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
G A+ LF M+ V D+ A++ AC HG ++ GL L ++
Sbjct: 102 SFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRS 161
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++ +V++YG+ G+LE+A MP
Sbjct: 162 IALK------------LVELYGKCGVLEDARKMFDGMP 187
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV+W+TMI GY+ G E++ +F+ M+ T +PNE TLV VLSAC+ + +
Sbjct: 270 MPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATN-CKPNEVTLVGVLSACAQLGSDEL 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + SYI ++ L +++ +G+A+I+MY KCG V A VF+ + K +I+W+++I GLA
Sbjct: 329 GEQIGSYIESQ-TLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGLA 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-PQ 179
+NG A+ L+ M+ +GV P+++TF+AL++AC+H GLVD+G+ F+ M + PQ
Sbjct: 388 LNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQ 447
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H AC+VD+ ++G L EA FI +M +E +W LL+ACR H + E+ +LV
Sbjct: 448 VEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKLV 507
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + L+SN +A A W D +IRD +R L+K + SWIE++
Sbjct: 508 VLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELD 557
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 114/207 (55%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ SW +MI YA G +EA+++F +M + + A PN T+ V S C+ L
Sbjct: 170 MPRKTSASWNSMIACYAHGGEFQEALTLFDQMLR-EGASPNAITITTVFSICAKTGDLET 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +++S DL + +V A++ MYVKC + A + F+ + +D+++WST+I+G +
Sbjct: 229 GRRAKAWVSEE-DLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYS 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + ++SAC+ G + G + + + + +P T
Sbjct: 287 HNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIES--QTLPLT 344
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY + G + A M
Sbjct: 345 SYLGSALIDMYTKCGHVARARDVFHRM 371
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y + GDV A ++F+ + K SW+++I+ A G ++AL LF M+ G
Sbjct: 148 NCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGAS 207
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
P+ +T + S C+ G ++ G KA + ++ H A +++MY + ++EA
Sbjct: 208 PNAITITTVFSICAKTGDLETGR-RAKAWVSEEDLQNVIVHTA-LMEMYVKCRAIDEARR 265
Query: 202 FIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253
MP + W ++ + R H + E+F+ R + N K V ++S
Sbjct: 266 EFDRMP-RRDVVAWSTMIAGYSHNGRPHESLELFE--RMKATNCKPNEVTLVGVLS 318
>gi|224111954|ref|XP_002332852.1| predicted protein [Populus trichocarpa]
gi|222837177|gb|EEE75556.1| predicted protein [Populus trichocarpa]
Length = 331
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 182/297 (61%), Gaps = 9/297 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI GYA+ G C++A+++F +M K E ++ L+ L+AC+ + L
Sbjct: 1 MPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAG-VELDQVVLLAALTACAELGDLKM 59
Query: 61 GQYVHSYISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G ++HSYI + + V + NA+I+MY CG + A +VF + + +SW+++I+
Sbjct: 60 GMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLIT 119
Query: 118 GLAMNGCGRQALQLFSLMIINGVF---PDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
A G + L++F M G PD +TFI ++ ACSH GLVD+G LFK M +
Sbjct: 120 AFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRW 179
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
I P+ +HY C+VD+ RAG L+EA+ I MP++ +VWGALL CR +RN E+ +
Sbjct: 180 GIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLV 239
Query: 235 RQELVNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
Q+LV + + G +L++ +A A++W+D +R ++ MG+KK G SW+++N
Sbjct: 240 SQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWVQIN 296
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 174/292 (59%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
MP+RDVVSW T++ GY G C EA+ +F++M + PN T+ +L AC+ L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G +VH+YI R ++ + +I+MY KCG + A+QVF K D+ SW+TVI
Sbjct: 267 ETGIWVHAYIE-RNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVIC 325
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G AL++F +M NG+ PDDVT + +++AC+HGGLVD+GL F +M + I
Sbjct: 326 GLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 385
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D+ GR G L+EA + IR MP++ +WGA L+AC++H N E+ +E
Sbjct: 386 PKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEE 445
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L ++S+ +A A W + R E+ M +KK GCS IE+
Sbjct: 446 LTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELK 497
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 43/273 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +V T M + G +A++VF +M P+ + L AC + +
Sbjct: 71 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDM-VADGVFPDNVAVAVALGACHGAGSWTA 129
Query: 61 ----GQYVHSYISTR----------------------------YD--LSVSNLVGNAVIN 86
G+ +H+ + T +D S S + NA+++
Sbjct: 130 RRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLH 189
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPD 143
Y + G V A ++F + +D++SW+TV++G + G R+AL LF M+ V P+
Sbjct: 190 QYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPN 249
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
T ++ AC+ G ++ G I A + C++DMY + G ++ A
Sbjct: 250 VPTMSTILGACAGAGCLETG-IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVF 308
Query: 204 REMPIEAEWSVWGALLNACRIHRND----EMFD 232
+ P + + W ++ +H MFD
Sbjct: 309 EKAPRKKDLFSWTTVICGLAMHGRTTDALRMFD 341
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
L V + A+++ Y G A ++F+ + + ++ + + +G QA+ +F
Sbjct: 41 LHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFG 100
Query: 134 LMIINGVFPDDVTFIALISACSHGG----LVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189
M+ +GVFPD+V + AC G + G ++ A+ IVP ++ +
Sbjct: 101 DMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMI-HALVVTSGIVPDVFVSTELIRV 159
Query: 190 YGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
YG +G L + +MP + + W A+L+
Sbjct: 160 YGESGELPVSRRVFDDMPSRSTIT-WNAMLH 189
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 178/287 (62%), Gaps = 5/287 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+W +MIGGY G EEA+ FQ M + EP++ T +V++AC+ + AL+
Sbjct: 105 MPDRDVVTWNSMIGGYVRNGKFEEALRSFQAM-LSSNVEPDKFTFASVITACARLGALNH 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q++H + + + V+ ++ +A+I+MY KCG + A +VF + D+ W+++I+GLA
Sbjct: 164 AQWLHDLMVQK-RIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLA 222
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ +FS M V PD +TF+ ++ ACSH GLV +G F M Y I PQ
Sbjct: 223 VHGLALDAMMVFSKMEAENVLPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQL 282
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GRAGLL+EA A I MP+E + VW LL+ACR HRN E+ + + N
Sbjct: 283 EHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSACRTHRNTELGEV---AVAN 339
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
G G + L+SN + +RW++A ++R+ ++ G++K+ G SW E
Sbjct: 340 ISGPKSGDYVLLSNIYCSQNRWDNAQEVREMMKEEGVRKRRGKSWFE 386
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 10/181 (5%)
Query: 53 SSISALSFGQYV--------HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
SSI+A YV + I + +VS N VI+ +++ G+ IA +VF +
Sbjct: 46 SSIAASLISTYVNCNQLNLAYQVIRQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKM 105
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
+D+++W+++I G NG +AL+ F M+ + V PD TF ++I+AC+ G ++
Sbjct: 106 PDRDVVTWNSMIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQ 165
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 224
L M I + ++DMY + G +E A+ + + SVW +L+N +
Sbjct: 166 WLHDLM-VQKRIEVNFILSSALIDMYSKCGRIETAKEVFESVE-RNDVSVWNSLINGLAV 223
Query: 225 H 225
H
Sbjct: 224 H 224
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 183/291 (62%), Gaps = 6/291 (2%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++DVV+W TMI GY RG +A+ +F+EM E P+E T++++LSAC+ + L G
Sbjct: 237 PEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGEC-PDEVTMLSLLSACADLGDLQVG 295
Query: 62 QYVHSYIS--TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H IS TR DLSV L+GNA+++MY KCG + IA+QVF + KD+ +W++VI GL
Sbjct: 296 RKLHCSISEMTRGDLSV--LLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGL 353
Query: 120 AMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G ++++LF+ M + + P+++TF+ +I ACSH G V++G FK M Y+I P
Sbjct: 354 AFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEP 413
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
H+ C+VD+ GRAGLL EA I +M IE +W LL ACR+H N E+ + L
Sbjct: 414 NMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERL 473
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A W+ A ++R + G++K+ G S IE +
Sbjct: 474 LKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEAD 524
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 44/230 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R VVSW+ + GYA RG A +F EM
Sbjct: 174 LPERSVVSWSALTAGYARRGELGVARQIFDEM---------------------------- 205
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V +LV N +I YVK G++ A +F+ KD+++W+T+I+G
Sbjct: 206 --------------PVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGY 251
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ G RQAL++F M G PD+VT ++L+SAC+ G + G L ++S +
Sbjct: 252 VLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLS 311
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+VDMY + G +E A ++M E + + W +++ H + E
Sbjct: 312 VLLGNALVDMYAKCGSIEIALQVFKKMR-EKDVTTWNSVIGGLAFHGHAE 360
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV +W ++IGG A G EE++ +F EM+ K +PNE T V V+ ACS +
Sbjct: 338 MREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEE 397
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM----ISWSTVI 116
G+ + RYD+ + + ++++ G G+ + F ++A ++ I W T++
Sbjct: 398 GRRYFKLMRERYDIEPNMIHHGCMVDLL---GRAGLLSEAFELIAKMEIEPNAIIWRTLL 454
Query: 117 SGLAMNG 123
++G
Sbjct: 455 GACRVHG 461
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 32/155 (20%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A QVF + D+ W+T++ G + + + + L++ M GV PD TF L+
Sbjct: 61 GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120
Query: 152 SACS-----------HGGLVDQG----------LILFK--------AMSTVYEIVPQT-Q 181
C+ HG ++ G LI F A S Y++ ++
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
++ + Y R G L A EMP++ W+V
Sbjct: 181 SWSALTAGYARRGELGVARQIFDEMPVKDLVSWNV 215
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 174/292 (59%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
MP+RDVVSW T++ GY G C EA+ +F++M + PN T+ +L AC+ L
Sbjct: 208 MPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 267
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G +VH+YI R ++ + +I+MY KCG + A+QVF K D+ SW+TVI
Sbjct: 268 ETGIWVHAYIE-RNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVIC 326
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G AL++F +M NG+ PDDVT + +++AC+HGGLVD+GL F +M + I
Sbjct: 327 GLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 386
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D+ GR G L+EA + IR MP++ +WGA L+AC++H N E+ +E
Sbjct: 387 PKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEE 446
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L ++S+ +A A W + R E+ M +KK GCS IE+
Sbjct: 447 LTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELK 498
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 110/262 (41%), Gaps = 39/262 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +V T M + G +A++VF +M P+ L L AC + +
Sbjct: 72 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDM-VADGVFPDNVALAVALGACHGAGSWTA 130
Query: 61 ----GQYVHSYISTR----------------------------YD--LSVSNLVGNAVIN 86
G+ +H+ I T +D S S + NA+++
Sbjct: 131 RRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLH 190
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPD 143
Y + G V A ++F + +D++SW+TV++G + G R+AL LF M+ V P+
Sbjct: 191 QYARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPN 250
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
T ++ AC+ G ++ G I A + C++DMY + G ++ A
Sbjct: 251 VPTMSTILGACAGAGCLETG-IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVF 309
Query: 204 REMPIEAEWSVWGALLNACRIH 225
+ P + + W ++ +H
Sbjct: 310 EKAPRKRDLFSWTTVICGLAMH 331
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 76/180 (42%), Gaps = 7/180 (3%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
L+ LS + LS +H + L V + A+++ Y G A ++F+ +
Sbjct: 14 LIKSLSPAVRRAHLS-ASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEM 72
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG----LV 160
+ ++ + + +G QA+ +F M+ +GVFPD+V + AC G
Sbjct: 73 PEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARR 132
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ G + A+ I P ++ +YG G L + +MP + + W A+L+
Sbjct: 133 NPGKKI-HALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTIT-WNAMLH 190
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/297 (38%), Positives = 182/297 (61%), Gaps = 9/297 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI GYA+ G C++A+++F +M K E ++ L+ L+AC+ + L
Sbjct: 224 MPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAG-VELDQVVLLAALTACAELGDLKM 282
Query: 61 GQYVHSYISTRYDLSVSNLV---GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G ++HSYI + S ++ NA+I+MY CG + A +VF + + +SW+++I+
Sbjct: 283 GMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLIT 342
Query: 118 GLAMNGCGRQALQLFSLMIINGVF---PDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
A G + L++F M G PD +TFI ++ ACSH GLVD+G LFK M +
Sbjct: 343 AFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRW 402
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
I P+ +HY C+VD+ RAG L+EA+ I MP++ +VWGALL CR +RN E+ +
Sbjct: 403 GIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLV 462
Query: 235 RQELVNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
Q+LV + + G +L++ +A A++W+D +R ++ MG+KK G SW+++N
Sbjct: 463 SQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWVQIN 519
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 116/254 (45%), Gaps = 45/254 (17%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI +A +++ F +M T ++ P+ T +L+AC+S +L GQ VHS +
Sbjct: 94 WNQMIRAHARSQTPAKSIQFFNQMLLT-DSRPDAHTYSFLLAACTSSLSLREGQQVHSKV 152
Query: 69 STR-----------------------------------YDLSVSNLVG-NAVINMYVKCG 92
T D+S N+V N+++ Y++ G
Sbjct: 153 LTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRG 212
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
++ A ++F + ++++SW+T+ISG A NG +QAL LF M GV D V +A ++
Sbjct: 213 NLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALT 272
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-----CVVDMYGRAGLLEEAEAFIREMP 207
AC+ G + G+ + + + V Q ++ MY G+++EA R MP
Sbjct: 273 ACAELGDLKMGMWIHSYIQDTF--VGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMP 330
Query: 208 IEAEWSVWGALLNA 221
+ S W +L+ A
Sbjct: 331 ERSAVS-WTSLITA 343
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 115/299 (38%), Positives = 185/299 (61%), Gaps = 10/299 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW +I GY + G EEAV +F + K + P T N+L+AC++++ L
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLL-KRESIWPTHYTFGNLLNACANLADLKL 403
Query: 61 GQYVHSYI-------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWS 113
G+ H++I + D + VGN++I+MY+KCG V VF + +D +SW+
Sbjct: 404 GRQAHTHILKHGFWFKSGEDSDI--FVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWN 461
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
+I G A NG G +AL++F M+++G PD VT I ++SACSH GLV++G F++M+
Sbjct: 462 AMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDP 233
+ +VP HY C+VD+ GRAG L+EA I+ MP+E + VWG+LL AC++H N +
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKY 581
Query: 234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+ ++ G + L+SN +A RW+D ++R ++R+MG+ K+ GCSWI + +
Sbjct: 582 VAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHL 640
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 115/209 (55%), Gaps = 4/209 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD SW M+ G+A+R EEA+ +M +++ NE + + LSAC+ + LS
Sbjct: 111 MPERDQCSWNAMVSGFAQRDRFEEALRFVVDMH-SEDFVLNEYSFGSALSACAGLMDLSI 169
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H I+ +RY L V +G+A+++MY KC V A + F+ + ++++SW+++I+
Sbjct: 170 GVQIHGLIAKSRYSLDV--YMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCY 227
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL++F M+ G+ PD++T ++ SAC+ + +GL + + +
Sbjct: 228 EQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRND 287
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+VDMY + + EA MP+
Sbjct: 288 LVLGNALVDMYAKCRRVNEARLVFDRMPL 316
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 124/262 (47%), Gaps = 52/262 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSW ++I Y + G +A+ VF M EP+E TL +V SAC+S+SA+
Sbjct: 212 MDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCG-IEPDEITLASVASACASLSAIRE 270
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKD----------- 108
G +H+ + ++D ++LV GNA+++MY KC V A VF+ + +D
Sbjct: 271 GLQIHARV-MKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGY 329
Query: 109 --------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
++SW+ +I+G NG +A++LF L+ ++P TF
Sbjct: 330 AKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389
Query: 149 ALISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197
L++AC +H ++ G FK+ V + ++DMY + GL+E
Sbjct: 390 NLLNACANLADLKLGRQAHTHILKHGF-WFKSGEDSDIFVGNS-----LIDMYMKCGLVE 443
Query: 198 EAEAFIREMPIEAEWSVWGALL 219
+ M +E + W A++
Sbjct: 444 DGRLVFERM-LERDNVSWNAMI 464
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ + +L C ++ + VH+ I + S + N ++++Y KCG + A +V
Sbjct: 18 DSSPFAKLLDTCVKSKSVFEARLVHARI-IKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
F+ + ++ SW+ V+ L G +AL LF M
Sbjct: 77 FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NAV+ K G + A+ +F + +D SW+ ++SG A +AL+ M
Sbjct: 89 NAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFV 148
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGL 195
++ +F + +SAC+ GL+D + + ++ ++ ++++ + +VDMY + +
Sbjct: 149 LNEYSFGSALSACA--GLMDLSIGV-----QIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201
Query: 196 LEEAEAFIREMPIEAEWSVWGALL 219
+ A+ +M + S W +L+
Sbjct: 202 VASAQRAFDDMDVRNIVS-WNSLI 224
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VVSW MI G A+ G +EA+ +F +M+ + PN TLV+VL A S + A+
Sbjct: 216 MPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQ-LGDVPPNYVTLVSVLPAVSRLGAIEL 274
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGL 119
G++VH + + + ++ + +++G+A+I+MY KCG + A+QVF + K+ I+WS +I GL
Sbjct: 275 GKWVHLF-AEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGL 333
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G R AL F M GV P DV +I ++SACSH GLV++G ++ M + ++P+
Sbjct: 334 AMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPR 393
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG LEEAE I MP++ + + ALL AC++H N EM + I + L+
Sbjct: 394 IEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILM 453
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G++ +SN FA WE K+R +++ + ++K GCSWIE++
Sbjct: 454 GWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELD 503
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 43/258 (16%)
Query: 8 SWTTMIGGYAERGFCE-------EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
SW T+I A+ + EA+ F M EPN+ T VL AC+ ++ +
Sbjct: 82 SWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141
Query: 61 GQYVHSYIS----TRYDLSVSNLV----------------------GNAV-----INMYV 89
G+ +H ++ + SNLV GN V I+ YV
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYV 201
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ GD+ + ++F+ + K ++SW+ +ISG A NG ++A+++F M + V P+ VT ++
Sbjct: 202 RMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVS 261
Query: 150 LISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++ A S G ++ G + LF + EI + ++DMY + G +++A +
Sbjct: 262 VLPAVSRLGAIELGKWVHLFAEKN---EIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR 318
Query: 208 IEAEWSVWGALLNACRIH 225
+ W A++ +H
Sbjct: 319 NKKNPITWSAIIGGLAMH 336
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLA-------MNGCGRQALQLFSLMIING-VFPDD 144
++ A + F+ + + + SW+T+I LA + +AL FS M+ +G V P+
Sbjct: 64 EIKYARKFFSQIHHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNK 123
Query: 145 VTFIALISACS-----------HGGLVDQGL--------------ILFKAMSTVYEIVPQ 179
TF ++ AC+ HG +V GL ++ AM + + Q
Sbjct: 124 FTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQ 183
Query: 180 TQHYACVV------DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
T+ VV D Y R G L + MP ++ S W +++ C
Sbjct: 184 TRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVS-WNVMISGC 231
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 190/292 (65%), Gaps = 6/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWTT+I GY + G +EA+ +F EM +T PNE TL + L+AC+++ AL
Sbjct: 124 MSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACANLVALDQ 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN---MLAYKDMISWSTVIS 117
G+++H YI + ++ ++ + ++++MY KCG++ A +VF+ L K + W+ +I
Sbjct: 183 GRWIHVYID-KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIG 240
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G AM+G ++A+ LF M + V P+ VTF+AL++ACSHG LV++G FK+M++ Y I
Sbjct: 241 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIE 300
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C+VD+ GR+GLL+EAE + MP+ + ++WGALL ACRIH++ E I +
Sbjct: 301 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 360
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +G L++N ++ + +W++A +R +I G KK GCS IE+N
Sbjct: 361 IKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELN 412
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 120/264 (45%), Gaps = 35/264 (13%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
++ +F M + PN T V V AC + + G+ + + + + L + V NA+
Sbjct: 15 SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVH-AIKIGLESNLFVTNAM 73
Query: 85 INMY-------------------------------VKCGDVGIAIQVFNMLAYKDMISWS 113
I MY V G++G A ++F+ ++ +D++SW+
Sbjct: 74 IRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWT 133
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
T+I+G GC ++AL LF M+ G P++ T + ++AC++ +DQG + +
Sbjct: 134 TIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKS 193
Query: 174 YEIVPQTQHYACVVDMYGRAGLLE-EAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMF 231
EI + A ++DMY + G ++ A+ F E ++ + W A++ +H ++ E
Sbjct: 194 -EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAI 252
Query: 232 DPIRQELVNKKGVSVGTFALMSNT 255
D Q V K + TF + N
Sbjct: 253 DLFEQMKVEKVSPNKVTFVALLNA 276
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 187/290 (64%), Gaps = 7/290 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R++V+W ++I GYA+ GF EEA+ F +M+ + EP+E T+ +VLSACS + L
Sbjct: 281 IPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ-AEGFEPDEVTIASVLSACSQLGLLDA 339
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + + ++ V N +++MY KCGD+ A +F +A+++ W+++ISG A
Sbjct: 340 GKKIHHMMNHK-GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFA 398
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++AL+ F M + PD++TF++++SAC+HGG V+ GL +F M Y +
Sbjct: 399 IHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGI 457
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG ++EA I+ MP++ VWGALL ACR+H + EM D + +E+V
Sbjct: 458 KHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVK 517
Query: 241 -KKGVSVGT---FALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
+S G + L+SN +A +DRWE A K+R E+ G +K +GCS I
Sbjct: 518 VDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 567
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 31/251 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME---------------KTKEAE------ 39
MP+R+ V+W MI GY G + AV +F++M ++ + E
Sbjct: 155 MPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFF 214
Query: 40 ---PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVG 95
P+E L NV++ + + + + + N +++I+ Y K G+V
Sbjct: 215 DDVPSE--LRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVK 272
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +F+ + +++++W+++ISG A NG +AL+ F M G PD+VT +++SACS
Sbjct: 273 EARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACS 332
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQH-YACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
GL+D G + M+ ++ + Q +VDMY + G L A M +
Sbjct: 333 QLGLLDAGKKIHHMMN--HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMA-HRNRAC 389
Query: 215 WGALLNACRIH 225
W ++++ IH
Sbjct: 390 WNSMISGFAIH 400
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 115/241 (47%), Gaps = 22/241 (9%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS- 66
+W +I Y +G EA+ V+ + + A LV L AC+S+S + G+ +H+
Sbjct: 62 NWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLV--LKACASLSIVKHGKALHAE 119
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I D V ++G +++ MY KCG+V + +VF+ + ++ ++W+ +I G NG +
Sbjct: 120 SIKNGVDFDV--MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSK 177
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYAC 185
A+ LF M I VT+I +I + G + F + S + +V T
Sbjct: 178 SAVLLFEKMSIRTA----VTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWT----V 229
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR---IHRNDEMFD--PIRQELV 239
+VD Y R +E A MP + + W ++++ C+ + +FD P+R LV
Sbjct: 230 MVDGYARNAEMEAAREVFEGMP-QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRN-LV 287
Query: 240 N 240
N
Sbjct: 288 N 288
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+ +VSW MIG Y + EAV ++ ME EP+ ++ +VL AC SALS
Sbjct: 270 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGME-ADGFEPDAVSITSVLPACGDTSALSL 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R L + L+ NA+I+MY KCG + A VF + +D++SW+ +IS
Sbjct: 329 GKKIHGYIE-RKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYG 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LFS M +G+ PD + F+ ++ACSH GL+++G FK M+ Y+I P+
Sbjct: 388 FSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRL 447
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ GRAG ++EA FI+EMP+E VWGALL ACR+H N ++ +L
Sbjct: 448 EHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLFQ 507
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A A RWE+ IR+ ++ GLKK G S +EVN
Sbjct: 508 LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 556
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 83/156 (53%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+V+ MI Y GF E + VF M + +P+ T VL ACS +
Sbjct: 101 IPERNVIIINVMIRSYVNNGFYREGIQVFGTM-CSCHVKPDHYTFPCVLKACSCSGNIVI 159
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +T+ LS + VGN +++MY KCG + A V + ++ +D++SW+++++G A
Sbjct: 160 GKKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYA 218
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
N AL++ M + D T +L+ A S+
Sbjct: 219 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 254
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +++ GYA+ ++A+ V +EME K + + T+ ++L A
Sbjct: 202 MSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISH-DAGTMASLLPA--------- 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VSN V MYVK +F + K ++SW+ +I
Sbjct: 252 ---------------VSNTTTENV--MYVK--------DMFFKMGKKSLVSWNVMIGVYM 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A++L+S M +G PD V+ +++ AC + G + + +++P
Sbjct: 287 KNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER-KKLIPNL 345
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G L+ A M S W A+++A
Sbjct: 346 LLENALIDMYAKCGCLDRARDVFENMKSRDVVS-WTAMISA 385
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 119/271 (43%), Gaps = 24/271 (8%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81
+ S ++E ++ P E + VL + L + VHS I + DL ++ +G
Sbjct: 23 KVTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTL---RTVHSRIISE-DLRYNSSLG 78
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
++ Y DV A +VF+ + +++I + +I NG R+ +Q+F M V
Sbjct: 79 VKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVK 138
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA 199
PD TF ++ ACS G + +I K + ++ + + +V MYG+ G L EA
Sbjct: 139 PDHYTFPCVLKACSCSGNI---VIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEA 195
Query: 200 EAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALM----SN 254
+ EM + W +L+ + R D+ + R+ K GT A + SN
Sbjct: 196 RLVLDEMS-RRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 254
Query: 255 TFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
T E+ ++D +MG KK+ SW
Sbjct: 255 TTT-----ENVMYVKDMFFKMG--KKSLVSW 278
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 177/293 (60%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++++WT MI G A+ GF EE++ +F M K++ EP + + AC+ ++AL
Sbjct: 387 MPERNLLTWTVMISGLAQNGFGEESLKLFNRM-KSEGFEPCDYAFAGAIIACAWLAALMH 445
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ + +D S+S GNA+I MY KCG V A +F + Y D +SW+ +I+ L
Sbjct: 446 GRQLHAQLVRLGFDSSLS--AGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAAL 503
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G G QAL+LF LM+ + PD +TF+ ++S CSH GLV++G FK+MS +Y I P
Sbjct: 504 GQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPG 563
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYA ++D+ RAG EA+ I MP+E +W ALL CRIH N ++ + L
Sbjct: 564 EDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLF 623
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A RW+D K+R +R G+KK+ GCSWIEV +
Sbjct: 624 ELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKV 676
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 126/281 (44%), Gaps = 53/281 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ VV+W MI GY GF EA+ +F++M + +E T +VLSAC++
Sbjct: 251 MTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG-IQWDEFTYTSVLSACANAGFFLH 309
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV-- 115
G+ VH+YI R L S V NA+ +Y KCG V A QVFN + KD++SW+ +
Sbjct: 310 GKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILS 369
Query: 116 -----------------------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
ISGLA NG G ++L+LF+ M G P D
Sbjct: 370 GYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYA 429
Query: 147 FIALISACS------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
F I AC+ HG + L+ S++ ++ MY + G++E A
Sbjct: 430 FAGAIIACAWLAALMHGRQLHAQLVRLGFDSSL-------SAGNALITMYAKCGVVEAAH 482
Query: 201 AFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQE 237
MP S W A++ A H + E+F+ + +E
Sbjct: 483 CLFLTMPYLDSVS-WNAMIAALGQHGHGAQALELFELMLKE 522
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/289 (20%), Positives = 121/289 (41%), Gaps = 65/289 (22%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGQ 62
RD V + MI GY+ A+ +F+++ + P+ T +VL A + I Q
Sbjct: 112 RDTVCYNAMITGYSHNNDGFGAIELFRDLLRNG-FRPDNFTFTSVLGALALIVEDEKQCQ 170
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKC------------------------------- 91
+H + V++++ NA+++++VKC
Sbjct: 171 QIHCAVVKSGSGFVTSVL-NALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWT 229
Query: 92 ---------GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
G++ A Q + + K +++W+ +ISG +G +AL++F M + G+
Sbjct: 230 TMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 289
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA----------CVVDMYGR 192
D+ T+ +++SAC++ G G V+ + +T+ + +Y +
Sbjct: 290 DEFTYTSVLSACANAGFFLHG-------KQVHAYILRTEPRPSLDFSLSVNNALATLYWK 342
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQE 237
G ++EA +MP++ + W A+L NA RI F+ + +
Sbjct: 343 CGKVDEARQVFNQMPVK-DLVSWNAILSGYVNAGRIDEAKSFFEEMPER 390
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 84 VINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
+I + G+ +A ++F L +D + ++ +I+G + N G A++LF ++ NG
Sbjct: 87 LIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFR 146
Query: 142 PDDVTFIALISA 153
PD+ TF +++ A
Sbjct: 147 PDNFTFTSVLGA 158
>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
Length = 939
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 181/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K+D+V+WT+M+ +AE G EAV++F +M +P+ LV +L A + +S+L+
Sbjct: 526 LDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAG-IQPDSVALVGILGAIAGLSSLTK 584
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R V V +++++MY CG + A++VF+ KD++ W+ +I+
Sbjct: 585 GKEIHGFL-IRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATG 643
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G+QA+ +F M+ GV PD V+F+AL+ ACSH LVD+G M + Y++ P
Sbjct: 644 MHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQ 703
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ GR+G EEA FI+ MP+E + VW ALL ACRIH+N E+ +L+
Sbjct: 704 EHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLE 763
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN FA +W + +IR ++ GL+K CSWIE+ ++
Sbjct: 764 LEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTV 815
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 14/227 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM---EKTKEAEPNEATLVNVLSACSSISA 57
MP R V SW +IG G EAV V++ M E A P+ TL +VL AC +
Sbjct: 119 MPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGD 178
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVI 116
G VH ++ + L S LV NA++ MY KCG + A++VF M +D+ SW++ I
Sbjct: 179 GRCGSEVHG-LAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAI 237
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STV 173
SG NG +AL LF M +G + T + ++ C+ ++ G L A+ T
Sbjct: 238 SGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE 297
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ I Q A +V MY R G ++ A RE+ + ++ W ++L+
Sbjct: 298 FNI----QCNALLV-MYARCGWVDSALRVFREIG-DKDYISWNSMLS 338
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 13/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSWTT+I YA+ EA+ F+ +K + + + + ++L ACS + ++S
Sbjct: 426 MRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQK-EGIKVDPMMMGSILEACSGLKSISL 484
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHSY + R L + ++ N +I++Y +CG+V A+ +F ML KD+++W+++++ A
Sbjct: 485 LKQVHSY-AIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFA 542
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
NG +A+ LF M+ G+ PD V + ++ A + + +G L + V
Sbjct: 543 ENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGA 602
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V + +VDMY G + A E + + +W A++NA +H
Sbjct: 603 VVSS-----LVDMYSGCGSMNYALKVFDEAKCK-DVVLWTAMINATGMH 645
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 9/163 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV SW + I G + G EA+ +F+ M+ + N T V VL C+ ++ L+ G+
Sbjct: 228 RDVASWNSAISGCVQNGMFLEALDLFRRMQ-SDGFSMNSYTTVGVLQVCAELAQLNHGRE 286
Query: 64 VHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H+ + T + N+ NA++ MY +CG V A++VF + KD ISW++++S
Sbjct: 287 LHAALLKCGTEF-----NIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYV 341
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N +A+ F M+ NG PD ++L+SA H G + G
Sbjct: 342 QNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 113/223 (50%), Gaps = 17/223 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D +SW +M+ Y + EA+ F EM + P+ A +V++LSA + L G+
Sbjct: 328 KDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNG-FNPDHACIVSLLSAVGHLGRLINGRE 386
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+Y + R D + + N +++MY+KC V + +VF+ + KD +SW+T+I+ A +
Sbjct: 387 VHAYAVKQRLDSDLQ--IANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQS 444
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL----FKAMSTVYEIVP 178
+A+ F G+ D + +++ ACS GL L+ + + + +++
Sbjct: 445 SRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS--GLKSISLLKQVHSYAIRNGLLDLIL 502
Query: 179 QTQHYACVVDMYGRAGLLEEAEAF-IREMPIEAEWSVWGALLN 220
+ + ++D+YG G E A I EM + + W +++N
Sbjct: 503 KNR----IIDIYGECG--EVCYALNIFEMLDKKDIVTWTSMVN 539
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 29/220 (13%)
Query: 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN- 78
G EA+ A P VL + A+S G+ +H++ L +
Sbjct: 33 GDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDA 92
Query: 79 -LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-- 135
+ ++ MY KCG + A ++F+ + + + SW+ +I +G +A+ ++ M
Sbjct: 93 GFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRA 152
Query: 136 --IINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQTQH 182
+ G PD T +++ AC HG V GL ++
Sbjct: 153 SEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANA--------- 203
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+V MY + GLL+ A M + + W + ++ C
Sbjct: 204 ---LVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DVVSWT+++ GY+ G EEA+ +F +M + P++ + +VLSAC+ ++ + F
Sbjct: 102 MVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKM-RISGVYPDQIAVASVLSACAELTVMDF 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ + + L S V N+++ MY KCG + A + F+ + +D+ISW+ +I G A
Sbjct: 161 GQQIHATL-VKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYA 219
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G+ +LQ + MI G PD +TFI L+ ACSH GL+ G F+AM VY I P
Sbjct: 220 QNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGP 279
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR+G L EA+ + +M + + VW ALL ACR+H+ E+ + + L
Sbjct: 280 EHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFE 339
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++ + ++SN ++ A +WEDA +IR +R G+ K+ G SWIE N +
Sbjct: 340 LEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIETNSKV 391
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 121/216 (56%), Gaps = 6/216 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW ++I G GF E+A+S FQ+M ++++ + +E TL +VL++ +S+ + V
Sbjct: 5 DEVSWNSLILGCVREGFEEDALSFFQKM-RSRDMKIDEYTLPSVLNSFASMKVMQNAISV 63
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H I + LV NA+I+MY K G + AI VF+ + KD++SW+++++G + NG
Sbjct: 64 HCLI-IKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHY 183
+A++LF M I+GV+PD + +++SAC+ ++D G + + + E +
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDN- 181
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+V MY + G + +A MP S W AL+
Sbjct: 182 -SLVTMYAKCGSIVDANRAFDNMPTRDVIS-WTALI 215
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 182/290 (62%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD++SW++MI YA+ EA+ +F EM+ P++ T+V+VLSAC + AL G+
Sbjct: 230 ERDLISWSSMIAAYAKARQSNEALRLFHEMQ-LANVLPDKVTMVSVLSACGDVGALGMGK 288
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H I R + + +G ++++MY KCGD+ +++VFN + +D+ +WS +I GLA +
Sbjct: 289 MIHECIE-RNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANH 347
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G AL FS MI + P+DVTFI ++SACSH GLVD+G F +MS VY++ P+ +H
Sbjct: 348 GFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEH 407
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y CVVD+ GRAG L+EA I+ MP + VW ALL ACRI++N E+ + L+ +
Sbjct: 408 YGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELE 467
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN ++ A W+ +R ++ + ++K G S IEV+ ++
Sbjct: 468 PHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAV 517
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 13/196 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ T +I YA+ G E A ++ EM A P+ +L+ + ++ +
Sbjct: 139 DLFVETALIEMYAKFGDIEIARNILDEM-----AHPDLVPYNVLLAEYVRVGEINLAHDL 193
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ R +LV N +I+ + GDVG A ++F+ +D+ISWS++I+ A
Sbjct: 194 FDRMPER------DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKAR 247
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL+LF M + V PD VT ++++SAC G + G ++ + + I +
Sbjct: 248 QSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER-NRIEIDLKLG 306
Query: 184 ACVVDMYGRAGLLEEA 199
+VDMY + G ++ +
Sbjct: 307 TSLVDMYAKCGDIDNS 322
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 177/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV+WTTM+ GY + E A+ +F M PN+ T + + ACS+++ LS
Sbjct: 279 MPRRNVVTWTTMMNGYLQSIQSETALQLFNGM-LIDGIRPNQVTFLGAVDACSNLAGLSE 337
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + + + ++N+Y KCG++ +A +VFN+ KD+ISW+ +I+ A
Sbjct: 338 GQQVHQMI-CKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYA 396
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M NG P+DVT++ L+SACSH GLVD+GL +F+ M I +
Sbjct: 397 HHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRD 456
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ RAG L +A+ I + +E +VW ALL C H N+ + D + L+
Sbjct: 457 EHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLE 516
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ L+ N +A A +W++A KIR E+ GLKK+ GCSWIEV
Sbjct: 517 AEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEV 564
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V++WTTM+ G A G EA ++F M + NV+S + IS +
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVNEARALFDGMPER-----------NVVSWNAMISGYAR 234
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + ++ N +I +++ ++ A ++F+ + +++++W+T+++G
Sbjct: 235 NHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGY 294
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ ALQLF+ M+I+G+ P+ VTF+ + ACS+ + +G
Sbjct: 295 LQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEG 338
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 27/244 (11%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSWT ++ YA +G +A ++F +A N T +LS + +
Sbjct: 62 PDRDVVSWTALVAAYACQGMLHDARALFDR----PDARRNVVTWTALLSGYARAGRVDEA 117
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R N+V N ++ Y G VG A +FN + +D SW+ +++ L
Sbjct: 118 EALFGRMPER------NVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALV 171
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +LF M V + + +++ + G V++ LF M P+
Sbjct: 172 RSGNIDKARKLFDRMPERNV----MAWTTMVAGIARSGSVNEARALFDGM-------PER 220
Query: 181 Q--HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDPIR 235
+ ++ Y R +++EA +MP A W++ + + R E+FD +
Sbjct: 221 NVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMP 280
Query: 236 QELV 239
+ V
Sbjct: 281 RRNV 284
>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
Length = 461
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 176/284 (61%), Gaps = 2/284 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSW M+ Y +E + +F +M E PNEATLV+VL+AC+ + L
Sbjct: 164 MPYRNVVSWNIMLALYVRIKDYDECLRMFDKM--MGETMPNEATLVSVLTACAHLGRLDR 221
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI + L+ A++ MY KCG + +A VF+ ++ + ++SW+++I G
Sbjct: 222 GKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYG 281
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G +AL++F M G P+D TFI ++SAC+H G++ +G F M Y+I P+
Sbjct: 282 MHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKV 341
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGL+++ E IR+MP+E ++WGALL+ACR H N E+ + + + L+
Sbjct: 342 EHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIE 401
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ +G + L+SN +A +W+D +R ++ GL K TG S
Sbjct: 402 LEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLS 445
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 89/206 (43%), Gaps = 42/206 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+ SW +MI GY G A +F +M +++S
Sbjct: 102 MPERDLFSWNSMIAGYVGNGDMTAAEDLFNKM-----------PFRDIVS---------- 140
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +I+ Y + ++ IA ++FN + Y++++SW+ +++
Sbjct: 141 --------------------WNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYV 180
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ L++F M + P++ T +++++AC+H G +D+G + + I P
Sbjct: 181 RIKDYDECLRMFDKM-MGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDV 239
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++ MY + G ++ A +M
Sbjct: 240 LLSTALLTMYAKCGAMDLARDVFDKM 265
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 17/216 (7%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
PN T ++ C I ++ G+ +H+ I ++ + V N++I+MY CG +G A
Sbjct: 8 PNHYTFPLLVKVCWEIGSIGDGEKIHARI-LKFGFELDLFVRNSLIHMYSVCGRIGDARA 66
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F + + D+++W+++I G NG A +LF M +F ++ ++I+ G
Sbjct: 67 MFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLF----SWNSMIAGYVGNGD 122
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWGA 217
+ LF M +IV + C++D Y + +E A MP W++ A
Sbjct: 123 MTAAEDLFNKMP-FRDIVS----WNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLA 177
Query: 218 LLNACRIHRNDE---MFDPIRQELVNKKGVSVGTFA 250
L RI DE MFD + E + + V
Sbjct: 178 LY--VRIKDYDECLRMFDKMMGETMPNEATLVSVLT 211
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 174/292 (59%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
MP+RDVVSW T++ GY G C EA+ +F++M + PN T+ +L AC+ L
Sbjct: 207 MPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCL 266
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G +VH+YI R ++ + +I+MY KCG + A+QVF K D+ SW+TVI
Sbjct: 267 ETGIWVHAYIE-RNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWTTVIC 325
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G AL++F +M NG+ PDDVT + +++AC+HGGLVD+GL F +M + I
Sbjct: 326 GLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRIT 385
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D+ GR G L+EA + IR MP++ +WGA L+AC++H N E+ +E
Sbjct: 386 PKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEE 445
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L ++S+ +A A W + R E+ M +KK GCS IE+
Sbjct: 446 LTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELK 497
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 113/273 (41%), Gaps = 43/273 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +V T M + G +A++VF +M P+ + L AC + +
Sbjct: 71 MPEQGLVPRTAMARAHVASGQAAQAIAVFGDM-VADGVFPDNVAVAVALGACHGAGSWTA 129
Query: 61 ----GQYVHSYISTR----------------------------YD--LSVSNLVGNAVIN 86
G+ +H+ + T +D S S + NA+++
Sbjct: 130 RRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLH 189
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPD 143
Y + G V A ++F + +D++SW+TV++G + G R+AL LF M+ V P+
Sbjct: 190 QYARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPN 249
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
T ++ AC+ G ++ G I A + C++DMY + G ++ A
Sbjct: 250 VPTMSTILGACAGAGCLETG-IWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVF 308
Query: 204 REMPIEAEWSVWGALLNACRIHRND----EMFD 232
+ P + + W ++ +H MFD
Sbjct: 309 EKAPRKKDLFSWTTVICGLAMHGRTTDALRMFD 341
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 69/151 (45%), Gaps = 6/151 (3%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
L V + A+++ Y G A ++F+ + + ++ + + +G QA+ +F
Sbjct: 41 LHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFG 100
Query: 134 LMIINGVFPDDVTFIALISACSHGG----LVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189
M+ +GVFPD+V + AC G + G ++ A+ IVP ++ +
Sbjct: 101 DMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMI-HALVVTSGIVPDVFVSTELIRV 159
Query: 190 YGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
YG +G L + +MP + + W A+L+
Sbjct: 160 YGESGELPVSRRVFDDMPSRSTIT-WNAMLH 189
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW M+ Y++ GF EE + +F+EM + E N + VLS C+ I+AL
Sbjct: 412 MPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWV-NRSAFACVLSTCADIAALEC 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS + + V VGNA++ MY KCG + A F + +D++SW+T+I+G A
Sbjct: 471 GMQLHSRL-IKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYA 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL++F M PDD+T + +++ACSH GLV++G+ F +M + + +
Sbjct: 530 RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKP 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L+EA +++MP E + ++WGALL A RIHRN E+ +++
Sbjct: 590 EHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFE 649
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + +W D +K+R + G+KK G SWIEV +
Sbjct: 650 LEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKV 701
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 119/293 (40%), Gaps = 52/293 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEA------------------VSVFQEMEKTKEAEPNE 42
MP+RDVVSW TM+ GYA RG EA VS + + +EA+
Sbjct: 288 MPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAK--- 344
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG----------NAVINMYVKCG 92
V A +A+S+ + +Y+ R L N ++ Y + G
Sbjct: 345 ----RVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAG 400
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A +F M+ KD +SW+ +++ + G + LQLF M G + + F ++S
Sbjct: 401 MLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLS 460
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD-----MYGRAGLLEEAEAFIREMP 207
C+ ++ G+ L ++ C V MY + G +EEA + EM
Sbjct: 461 TCADIAALECGMQLHS------RLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME 514
Query: 208 IEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
E + W ++ H E+FD +R+ ++ VG A S++
Sbjct: 515 -ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHS 566
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 41/247 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VS+ MI +A G A F ++ K+A + +L+A +
Sbjct: 195 MPVKDSVSYNVMISSHANHGLVSLARHYF-DLAPEKDA----VSWNGMLAAYVRNGRI-- 247
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +R + + NA++ YV+ + A ++FN + +D++SW+T++SG A
Sbjct: 248 -QEARELFDSRTEWDA--ISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---------- 170
G +A +LF + I VF T+ A++S + G++++ +F AM
Sbjct: 305 RRGDMAEARRLFDVAPIRDVF----TWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNA 360
Query: 171 --------------STVYEIVP--QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+++ +P + ++ Y +AG+L+EA A MP + +
Sbjct: 361 MMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMP-QKDAVS 419
Query: 215 WGALLNA 221
W A+L A
Sbjct: 420 WAAMLAA 426
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 28/224 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R ++ TM+ GYA G +A+S F+ + + N TL++ L SS++
Sbjct: 133 MPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYN--TLLHALGVSSSLAD--- 187
Query: 61 GQYVHSYISTRYD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ +D + V + V N +I+ + G V +A F++ KD +SW+ +++
Sbjct: 188 -------VRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAA 240
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG ++A +LF + D +++ AL++ +++ +F M P
Sbjct: 241 YVRNGRIQEARELFD----SRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM-------P 289
Query: 179 QTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
Q + +V Y R G + EA PI ++ W A+++
Sbjct: 290 QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFT-WTAIVS 332
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 187/290 (64%), Gaps = 7/290 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R++V+W ++I GYA+ GF EEA+ F +M+ + EP+E T+ +VLSACS + L
Sbjct: 152 IPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ-AEGFEPDEVTIASVLSACSQLGLLDA 210
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + + ++ V N +++MY KCGD+ A +F +A+++ W+++ISG A
Sbjct: 211 GKKIHHMMNHK-GIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFA 269
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++AL+ F M + PD++TF++++SAC+HGG V+ GL +F M Y +
Sbjct: 270 IHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGI 328
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG ++EA I+ MP++ VWGALL ACR+H + EM D + +E+V
Sbjct: 329 KHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVK 388
Query: 241 -KKGVSVGT---FALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
+S G + L+SN +A +DRWE A K+R E+ G +K +GCS I
Sbjct: 389 VDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSI 438
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 31/251 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME---------------KTKEAE------ 39
MP+R+ V+W MI GY G + AV +F++M ++ + E
Sbjct: 26 MPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFF 85
Query: 40 ---PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVG 95
P+E L NV++ + + + + + N +++I+ Y K G+V
Sbjct: 86 DDVPSE--LRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVK 143
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A +F+ + +++++W+++ISG A NG +AL+ F M G PD+VT +++SACS
Sbjct: 144 EARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACS 203
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQH-YACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
GL+D G + M+ ++ + Q +VDMY + G L A M +
Sbjct: 204 QLGLLDAGKKIHHMMN--HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMA-HRNRAC 260
Query: 215 WGALLNACRIH 225
W ++++ IH
Sbjct: 261 WNSMISGFAIH 271
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
++G +++ MY KCG+V + +VF+ + ++ ++W+ +I G NG + A+ LF M I
Sbjct: 1 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYACVVDMYGRAGLLE 197
VT+I +I + G + F + S + +V T +VD Y R +E
Sbjct: 61 TA----VTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWT----VMVDGYARNAEME 112
Query: 198 EAEAFIREMPIEAEWSVWGALLNA-CR---IHRNDEMFD--PIRQELVN 240
A MP + + W ++++ C+ + +FD P+R LVN
Sbjct: 113 AAREVFEGMP-QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRN-LVN 159
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 184/292 (63%), Gaps = 8/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+VSWT MI G + ++++ +F M +T P+ L +VLSAC+S+ L F
Sbjct: 263 LPTRDIVSWTIMITGLVQSDHPKQSLELFSMM-RTLGISPDAIILTSVLSACASLGTLDF 321
Query: 61 GQYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G +VH YI+ R +D+ + G A+++MY KCG + +A+++F ++ ++ +W+ ++
Sbjct: 322 GTWVHEYINQRGIKWDIHI----GTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLC 377
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G +AL LF +MII+GV P+++TF+A+++AC H GLVD+G F MS +Y ++
Sbjct: 378 GLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLL 437
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D++ RAGLLEEA R MP++ + +WG LLNAC N E+ I+
Sbjct: 438 PKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTTVGNIELSHRIQDY 497
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G F L+SN A RW + ++R ++ G++K G S IEV+
Sbjct: 498 ILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSSVIEVD 549
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 20/231 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSW ++I G+ + G +EA+SVF M+ EP+ TLV+VL+AC+ L
Sbjct: 166 MLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD----VEPSMTTLVSVLAACARNGDLCT 221
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R+ +++ ++GNA+++MYVK G A +F+ L +D++SW+ +I+GL
Sbjct: 222 GKGIHGVIERRFKVNL--VLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLV 279
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
+ +Q+L+LFS+M G+ PD + +++SAC+ G +D G + V+E + Q
Sbjct: 280 QSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFG-------TWVHEYINQR 332
Query: 180 -----TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G +E A M ++ W ALL +H
Sbjct: 333 GIKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFT-WNALLCGLAMH 382
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 9/208 (4%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ ++I GY F + AVSV++ M + P+ T +L ACS+ S G+ VH +
Sbjct: 73 FNSLINGYVGGEFPQMAVSVYRRMVRDGFV-PDMFTFPVLLKACSNFSGSREGRQVHGVV 131
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L + V N++I Y CGD A +VF+ + +D++SW+++ISG G +A
Sbjct: 132 -VKLGLLADHYVQNSLIRCYGACGDFSCAGKVFDEMLVRDVVSWNSLISGFMKAGHFDEA 190
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+ +F M V P T +++++AC+ G + G + + +++ + ++D
Sbjct: 191 ISVFFRM---DVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGN--AMLD 245
Query: 189 MYGRAGLLEEAEAFIREMPIE--AEWSV 214
MY + G EA+ E+P W++
Sbjct: 246 MYVKNGCFYEAKNIFDELPTRDIVSWTI 273
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 193/294 (65%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVS T +I GYA+ G EEA+ +F+ +++ + N T +VL+A S ++AL
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDH 230
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS++ R L ++ N++I+MY KCG + + ++F+ + + +ISW+ ++ G +
Sbjct: 231 GRQVHSHV-LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYS 289
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVP 178
+G GR+A++LF LM N V PD VTF+A++S CSHGG+ D+GL +F M + P
Sbjct: 290 KHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP 349
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY CVVD++GRAG +EEA FI++MP E ++WG+LL ACR+H+N + + + + L
Sbjct: 350 EIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRL 409
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + ++SN +A A RW+D +R+ ++ + K+ G SWIE++ ++
Sbjct: 410 LEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 463
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 21/269 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT MI GY++RG+ EA+ +F EM + A PNE T VL++C+S S
Sbjct: 71 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQL 129
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +HS I T ++ + VG+++++MY K G + A +VF+ L +D++S + +ISG
Sbjct: 130 GRQIHSLVIKTSFESHI--FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 187
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYE 175
A G +AL LF + G+ + VT+ ++++A S +D G + +A Y
Sbjct: 188 AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 247
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMF 231
++ + ++DMY + G L + MP E W A+L H E+F
Sbjct: 248 VLQNS-----LIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELF 301
Query: 232 DPIRQELVNK-KGVSVGTFALMSNTFAGA 259
+++E NK K SV A++S G
Sbjct: 302 KLMKEE--NKVKPDSVTFLAVLSGCSHGG 328
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 116/237 (48%), Gaps = 14/237 (5%)
Query: 47 NVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+VL+ C S +A+ GQ VH++ I T Y+ V + +I +Y KC +G A +V + +
Sbjct: 15 SVLTECISQTAIREGQRVHAHMIKTCYEPPV--YLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
++++SW+ +ISG + G +AL LF M+++G P++ TF ++++C+ G
Sbjct: 73 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS----SSGFQ 128
Query: 166 LFKAMSTVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
L + + ++ H + ++DMY +AG + EA +P S +
Sbjct: 129 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 188
Query: 223 RIHRNDEMFDPIRQELVNKKGVSVG--TFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ ++E D R+ + ++G+ T+A + +G + ++ + R L
Sbjct: 189 QLGLDEEALDLFRR--LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 243
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 185/287 (64%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK+D++SW++MI GY++ +A+ +F++M++ K +P+ + +V+S+C+ + AL
Sbjct: 280 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK-VKPDAIVIASVVSSCAHLGALDL 338
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ R ++ ++ N++I+MY+KCG A+QVF + KD +SW+++I GLA
Sbjct: 339 GKWVHEYVR-RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 397
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +++L LF M+ G P+ VTF+ ++ AC++ LV++GL F++M +Y + PQ
Sbjct: 398 NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQM 457
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG LE+A FI EMPI+ + VW LL +C H + + + + ++L
Sbjct: 458 KHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNE 517
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + L+SN +A A RW +A +R + ++K GCS +E
Sbjct: 518 LEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 137/274 (50%), Gaps = 15/274 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I G A+ +A++ +++ + P+ T +L AC+ I+AL+ G+ +H++I
Sbjct: 55 WNILIRGLAQSDAPADAIAFYKKAQGGGMV-PDNLTFPFILKACARINALNEGEQMHNHI 113
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
T+ L V N++I++Y CG++ A VF+ + KD++SW+++I G + +
Sbjct: 114 -TKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDI 172
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L LF LM GV D VT I ++SAC+ G + + + Y I +VD
Sbjct: 173 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED-YCIEVDVYLGNTLVD 231
Query: 189 MYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHRNDEMFDPI-RQELVNKKGV 244
+GR G L+ AE M + ++ A I ++FD I +++L+
Sbjct: 232 YFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLI----- 286
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+++ M + ++ A+ + DA +I +++R +K
Sbjct: 287 ---SWSSMISGYSQANHFSDALEIFRQMQRAKVK 317
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 122/249 (48%), Gaps = 33/249 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DVVSW ++I GY++ ++ +++F+ M+ + + ++ T++ V+SAC+ + S
Sbjct: 148 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ-NEGVKADKVTMIKVVSACTRLGDYSM 206
Query: 61 GQYVHSYISTR-----------------------------YDLSVSNLVG-NAVINMYVK 90
Y+ YI +++ V N+V NA+I Y K
Sbjct: 207 ADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAK 266
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
D+ A ++F+ + KD+ISWS++ISG + AL++F M V PD + ++
Sbjct: 267 GQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASV 326
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+S+C+H G +D G + + + I T ++DMY + G +EA +EM E
Sbjct: 327 VSSCAHLGALDLGKWVHEYVRR-NNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-EK 384
Query: 211 EWSVWGALL 219
+ W +++
Sbjct: 385 DTLSWNSII 393
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 189/295 (64%), Gaps = 7/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ +SW +M+ GY + G +A+S+F +M+ + E +PN T + ++SACS + +
Sbjct: 263 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS-ECDPNPVTALIMVSACSYLGSKHL 321
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVIS 117
G+ +H++ IS++ D+ + + NA+++MY+KCGD+ A+++FN L +D+ SW+ +IS
Sbjct: 322 GRKLHNFVISSKMDIDTT--LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLIS 379
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G ++G G++AL+LFS M + GV P+D+TF +++SACSH GL+D+G F M+ + +
Sbjct: 380 GYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVR 438
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC+VDM GRAG L EA I+++P VWGALL ACRIH N E+ +
Sbjct: 439 PEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANN 498
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + G + LMSN +A +++W++ +R ++ GLKK S IE +
Sbjct: 499 LFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 553
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 2/149 (1%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TM+ YA G EA+ ++ M++ N T VL C+S FG+ VH +
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVG-VNNFTYPFVLKVCASELGAVFGEVVHGQV- 158
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R V A+++MY KCG++G A +VF+ + +D++ W+ +I+ +AL
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKAL 218
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGG 158
LF M G D++T I++ SA G
Sbjct: 219 MLFRKMQEEGFLGDEITAISVASAVGQLG 247
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 113/251 (45%), Gaps = 47/251 (18%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV WT MI Y + +A+ +F++M++ E L + ++A
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRKMQE-------EGFLGDEITA------------ 236
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ----VFNMLAYKDMISWSTVISGL 119
+SV++ VG + GD +AI VF+ + ++ ISW++++SG
Sbjct: 237 ----------ISVASAVG--------QLGDGRMAISRARLVFDRMEERNGISWNSMLSGY 278
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG AL LF+ M + P+ VT + ++SACS+ G G L + + +
Sbjct: 279 TQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDT 338
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRND----EMFDPI 234
T A ++DMY + G L+ A + E + S W L++ +H + E+F +
Sbjct: 339 TLRNA-IMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRM 397
Query: 235 RQELVNKKGVS 245
+ E V ++
Sbjct: 398 QVEGVEPNDIT 408
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 189/295 (64%), Gaps = 7/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ +SW +M+ GY + G +A+S+F +M+ + E +PN T + ++SACS + +
Sbjct: 294 MEERNGISWNSMLSGYTQNGRPTDALSLFNQMQAS-ECDPNPVTALIMVSACSYLGSKHL 352
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVIS 117
G+ +H++ IS++ D+ + + NA+++MY+KCGD+ A+++FN L +D+ SW+ +IS
Sbjct: 353 GRKLHNFVISSKMDIDTT--LRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLIS 410
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G ++G G++AL+LFS M + GV P+D+TF +++SACSH GL+D+G F M+ + +
Sbjct: 411 GYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVR 469
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC+VDM GRAG L EA I+++P VWGALL ACRIH N E+ +
Sbjct: 470 PEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANN 529
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + G + LMSN +A +++W++ +R ++ GLKK S IE +
Sbjct: 530 LFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 584
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 10/248 (4%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV WT MI Y + +A+ +F++M++ + +E T ++V SA +
Sbjct: 196 RDVVCWTAMITLYEQAERPLKALMLFRKMQE-EGFLGDEITAISVASAVGQLGDGRMAIS 254
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH Y + + VS VGN+++ MY KCG+V A VF+ + ++ ISW++++SG N
Sbjct: 255 VHGYAVLNGFIGDVS--VGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQN 312
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G AL LF+ M + P+ VT + ++SACS+ G G L + + + T
Sbjct: 313 GRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLR 372
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIHRND----EMFDPIRQE 237
A ++DMY + G L+ A + E + S W L++ +H + E+F ++ E
Sbjct: 373 NA-IMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 431
Query: 238 LVNKKGVS 245
V ++
Sbjct: 432 GVEPNDIT 439
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TM+ YA G EA+ ++ M++ N T VL C+S FG+ VH +
Sbjct: 101 NTMLRAYANAGRSYEAIDLYIYMQRMGVG-VNNFTYPFVLKVCASELGAVFGEVVHGQV- 158
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R V A+++MY KCG++G A +VF+ + +D++ W+ +I+ +AL
Sbjct: 159 VRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKAL 218
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVD 188
LF M G D++T I++ SA G L D + I + + + +V
Sbjct: 219 MLFRKMQEEGFLGDEITAISVASAV--GQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVG 276
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
MY + G +E A M E W ++L+
Sbjct: 277 MYAKCGNVERARLVFDRME-ERNGISWNSMLSG 308
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+++SWT+MI G G +EA+++F M+ T + + LV+ L AC+ + L
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQ-TAGIKLDNVALVSTLQACADLGVLDQ 268
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI ++++ + ++G +I+MY KCGD+ AI+VF + K + W+ +ISG A
Sbjct: 269 GKWIHAYIK-KHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL+ F M GV P+ +TF +++ACSH GLV + +LF++M ++ P
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EAE I MP++ ++WGALLNAC IH N E+ I + L+
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQ 447
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +++ A A W A ++R +++ G+ K GCS I VN
Sbjct: 448 VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 125/248 (50%), Gaps = 35/248 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSY 67
W TMI GY+ EEA+ ++ M + P+ A T +L ACSS+SA Q +H++
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHM--LYHSVPHNAYTFPFLLKACSSMSASEETQQIHAH 143
Query: 68 I----------STRYDLSVSNLVG--------------------NAVINMYVKCGDVGIA 97
I +T L+V + G N++I+ Y KCG++ +A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++FN + +++ISW+++ISG G ++AL LF M G+ D+V ++ + AC+
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G++DQG + A +EI ++DMY + G LEEA R+M E SVW A
Sbjct: 264 GVLDQGKWI-HAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTA 321
Query: 218 LLNACRIH 225
+++ IH
Sbjct: 322 MISGYAIH 329
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+++SWT+MI G G +EA+++F M+ T + + LV+ L AC+ + L
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQ-TAGIKLDNVALVSTLQACADLGVLDQ 268
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI ++++ + ++G +I+MY KCGD+ AI+VF + K + W+ +ISG A
Sbjct: 269 GKWIHAYIK-KHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+AL+ F M GV P+ +TF +++ACSH GLV + +LF++M ++ P
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EAE I MP++ ++WGALLNAC IH N E+ I + L+
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQ 447
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +++ A A W A ++R +++ G+ K GCS I VN
Sbjct: 448 VDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 126/248 (50%), Gaps = 35/248 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSY 67
W TMI GY+ EEA+ ++ M + P+ A T +L ACSS+SAL Q +H++
Sbjct: 86 WNTMIRGYSNSKEPEEALLLYHHM--LYHSVPHNAYTFPFLLKACSSMSALEETQQIHAH 143
Query: 68 I----------STRYDLSVSNLVG--------------------NAVINMYVKCGDVGIA 97
I +T L+V + G N++I+ Y KCG++ +A
Sbjct: 144 IIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMA 203
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++FN + +++ISW+++ISG G ++AL LF M G+ D+V ++ + AC+
Sbjct: 204 YEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADL 263
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G++DQG + A +EI ++DMY + G LEEA R+M E SVW A
Sbjct: 264 GVLDQGKWI-HAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKME-EKGVSVWTA 321
Query: 218 LLNACRIH 225
+++ IH
Sbjct: 322 MISGYAIH 329
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ ++SW MI Y + G EA+ ++ M+ A P+E TL VLSAC + L+
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA-PDEFTLAAVLSACGQLGDLAS 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + L N++++MY +CG V AI +F+ + K++ISW+ +I LA
Sbjct: 362 GKMIHDCIRDNFHNPGVALF-NSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALA 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + AL F M+ + PD++TF+AL+SAC+HGGL++ G F+AM VY + P
Sbjct: 421 MHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGV 480
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G L +A I++MP+ + VWGALL ACRIH + ++ + ++L+
Sbjct: 481 EHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLE 540
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G+S G F L+SN +WED ++R +R G+KK G S IE N +I
Sbjct: 541 LEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNI 592
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 35/256 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW +MI GYA+ G EA S+F+ M + + +E TLV++L ACS+ L F
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEF 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G+ VHS++ R + ++ NA+++MY KCGD+ +A F+M+ +K+
Sbjct: 230 GKLVHSHLLVR-GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ISW+ +IS G +AL L++ M + G+ PD+ T A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SAC G + G ++ + + P + ++DMY R G ++ A + EMP +
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSK 407
Query: 210 AEWSVWGALLNACRIH 225
S W A++ A +H
Sbjct: 408 NVIS-WNAIIGALAMH 422
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 131/277 (47%), Gaps = 7/277 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + ++I Y +EA+ + + M + + PNE TL +L AC+ + A
Sbjct: 70 IPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR-RGILPNEFTLPFLLKACARVQAWEH 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
H + + VGNA+++ Y G +G + + F+ + ++++SW+++I+G A
Sbjct: 129 VMVTHGVV-VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYA 187
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+A LF M G+ D+ T ++L+ ACS G ++ G ++ + +
Sbjct: 188 QAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLI 247
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
A +VDMYG+ G L A MP + S W ++L C + + + D R
Sbjct: 248 LANA-LVDMYGKCGDLLMAHTCFDMMPFKNAVS-WTSML--CALAKRASI-DAARDWFEQ 302
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
S+ ++ M + + R+ +A + + ++ +GL
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGL 339
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 187/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD + W +++ G A+ G EEA+ +F+ M + P T +++ C ++++L F
Sbjct: 231 LPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPVCGNLASLRF 289
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+Y I ++ +V + +++I+MY KCG++ IA +F+ ++ D++SW+ +I G
Sbjct: 290 GKQLHAYVICGGFEDNV--FISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGY 347
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R+AL LF M + P+ +TF+A+++ACSH GLVD+G FK+MS Y IVP
Sbjct: 348 ALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPT 407
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+A + D GRAG L+EA FI +M I+ SVW LL ACR+H+N + + + ++++
Sbjct: 408 LEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIM 467
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S+G+ ++SN ++ + RW +A +R+ +R+ G+KK CSWIEV +
Sbjct: 468 ELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKL 520
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 116/243 (47%), Gaps = 18/243 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW T++ G AE G EA+ ++M + + P+ TL VL + + +
Sbjct: 130 MIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCR-EGFRPDSFTLSTVLPIFAECADVKR 188
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + + R VG+++I+MY C +++VF+ L +D I W+++++G A
Sbjct: 189 GLEVHGF-AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCA 247
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL +F M+ GV P VTF +LI C G L + F Y I
Sbjct: 248 QNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVC--GNLAS---LRFGKQLHAYVICGGF 302
Query: 181 QH----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ + ++DMY + G + A +M + W A++ +H P R+
Sbjct: 303 EDNVFISSSLIDMYCKCGEISIAHCIFDKMS-SPDVVSWTAMIMGYALH------GPARE 355
Query: 237 ELV 239
LV
Sbjct: 356 ALV 358
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 31/238 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSY 67
W I A G +AVS+F M + + A+L L +C+++ + G +H+
Sbjct: 16 WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHA- 74
Query: 68 ISTRYDLSVSNLVGNAVINMYVK--CG---DVGIAI--------------QVFNMLAYKD 108
++ R NA++N+Y K C G+AI +VF+ + +D
Sbjct: 75 LAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD 134
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL---- 164
++SW+T++ G A G +AL M G PD T ++ + V +GL
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
F+ V + ++DMY + + +P+ + +W +LL C
Sbjct: 195 FAFRNGFDSDVFVGSS-----LIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGC 246
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 180/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + +A+ VF+ M + +PN +TL +VL CS++SAL F
Sbjct: 192 MPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGF 251
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + L S VG ++++MY KCGD+ A ++F+ + KD+++W+ +ISG A
Sbjct: 252 GRQVHQWC-MKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYA 310
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++LF M GV PD +T +A+++AC H GL D G+ F+ M Y I PQ
Sbjct: 311 QHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQV 370
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAGLLE A I MP E S +G LL ACR+++N E + ++L+
Sbjct: 371 DHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIE 430
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + ++N +A A+RW+D +++R ++ + K G SW+E+
Sbjct: 431 QDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIK 479
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 117/247 (47%), Gaps = 22/247 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV SW TM+ G ++ G EEA ++F+ M N + +++A +S +
Sbjct: 98 MPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR-----NAVSWNAMVAARASSGDMGA 152
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + D ++ A+++ Y+ G+V A++ F + ++++SW+ V++G
Sbjct: 153 AENLFRNAPEKTDA----ILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYV 208
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFK---AMSTVYEI 176
N AL++F M+ + + P+ T +++ CS+ + G + + + I
Sbjct: 209 KNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSI 268
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFD 232
T ++ MY + G L++A EM + + W A+++ H + ++F+
Sbjct: 269 TVGTS----LLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMISGYAQHGGGRKAIKLFE 323
Query: 233 PIRQELV 239
++ E V
Sbjct: 324 KMKDEGV 330
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ + CGD+ A +VF+ + +D+ SW+T++SGL+ NG +A +F M
Sbjct: 76 NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNA- 134
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ A+++A + G + LF+ + + T +V Y G +++A
Sbjct: 135 ---VSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWT----AMVSGYMDTGNVQKAME 187
Query: 202 FIREMPIE 209
+ R MP+
Sbjct: 188 YFRAMPVR 195
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 193/294 (65%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVS T +I GYA+ G EEA+ +F+ +++ + N T +VL+A S ++AL
Sbjct: 639 LPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASVLTALSGLAALDH 697
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS++ R L ++ N++I+MY KCG + + ++F+ + + +ISW+ ++ G +
Sbjct: 698 GRQVHSHV-LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYS 756
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVP 178
+G GR+A++LF LM N V PD VTF+A++S CSHGG+ D+GL +F M + P
Sbjct: 757 KHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEP 816
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY CVVD++GRAG +EEA FI++MP E ++WG+LL ACR+H+N + + + + L
Sbjct: 817 EIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRL 876
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + ++SN +A A RW+D +R+ ++ + K+ G SWIE++ ++
Sbjct: 877 LEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 930
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 21/269 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT MI GY++RG+ EA+ +F EM + A PNE T VL++C+S S
Sbjct: 538 MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA-PNEFTFATVLTSCTSSSGFQL 596
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +HS I T ++ + VG+++++MY K G + A +VF+ L +D++S + +ISG
Sbjct: 597 GRQIHSLVIKTSFESHI--FVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGY 654
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYE 175
A G +AL LF + G+ + VT+ ++++A S +D G + +A Y
Sbjct: 655 AQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYV 714
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMF 231
++ + ++DMY + G L + MP E W A+L H E+F
Sbjct: 715 VLQNS-----LIDMYSKCGSLTYSRRIFDSMP-ERTVISWNAMLVGYSKHGLGREAVELF 768
Query: 232 DPIRQELVNK-KGVSVGTFALMSNTFAGA 259
+++E NK K SV A++S G
Sbjct: 769 KLMKEE--NKVKPDSVTFLAVLSGCSHGG 795
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 116/237 (48%), Gaps = 14/237 (5%)
Query: 47 NVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+VL+ C S +A+ GQ VH++ I T Y+ V + +I +Y KC +G A +V + +
Sbjct: 482 SVLTECISQTAIREGQRVHAHMIKTCYEPPV--YLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
++++SW+ +ISG + G +AL LF M+++G P++ TF ++++C+ G
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS----SSGFQ 595
Query: 166 LFKAMSTVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
L + + ++ H + ++DMY +AG + EA +P S +
Sbjct: 596 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 655
Query: 223 RIHRNDEMFDPIRQELVNKKGVSVG--TFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ ++E D R+ + ++G+ T+A + +G + ++ + R L
Sbjct: 656 QLGLDEEALDLFRR--LQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 710
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 187/290 (64%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDI 385
Query: 61 GQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI R ++ ++ + ++I+MY KCGD+ A QVFN + +K + SW+ +I G
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G + LFS M G+ PDD+TF+ L+SACSH G++D G +F+ M+ Y++ P+
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPK 505
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + + L+
Sbjct: 506 LEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLI 565
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + K R + G+KK GCS IE++
Sbjct: 566 KIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 132/234 (56%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F++M KT P+E+T+V V+SAC+ ++
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIEL 284
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I S +V NA+I++Y KCG++ A +F L YKD+ISW+T+I G
Sbjct: 285 GRQVHLWIDDHGFGSNLKIV-NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A + + S W A++ +H R D FD
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFD 456
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T VL +C+ A GQ +
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--------------------- 103
H ++ + + V ++I+MYV+ G + A +VF+
Sbjct: 157 HGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 104 ----------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ KD++SW+ +ISG A G ++AL+LF M+ V PD+ T + ++SA
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 154 CSHGGLVDQGLILF-----KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
C+ G ++ G + + +IV ++D+Y + G LE A +P
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIV------NALIDLYSKCGELETACGLFERLPY 329
Query: 209 EAEWSVWGALL 219
+ S W L+
Sbjct: 330 KDVIS-WNTLI 339
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 180/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VVSWT ++ GY G AV F+ M+ + EP++ ++V VL AC+ + AL
Sbjct: 210 MPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQ-MEGFEPDDVSIVAVLPACAQLGALEL 268
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y + R+ + V NA++ MY KCG + A+Q+FN +A KD+ISWST++ GLA
Sbjct: 269 GRWIYAYCN-RHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLA 327
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G ++A+QLF+ M G V P+ +TF+ L+SACSH GL+D+GL F M+ VY I P
Sbjct: 328 AHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPG 387
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ R+G ++ I +MP+ A+ +WG++LNACR H + + + LV
Sbjct: 388 VEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIWGSVLNACRSHGDVDTAVLAAERLV 447
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ VG +++N +A A RW + R IR ++K GCS IEV+
Sbjct: 448 ALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEVD 497
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 48/290 (16%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKE------AEPNEATLVNVLSACSSISALSFGQY 63
MI YA+ +A++V+ M + + + T +L AC + AL G+
Sbjct: 80 NAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALDLGKQ 139
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH ++ R + +V N++I MY + GD+ +A +VF+ + +D++SW+TVIS A G
Sbjct: 140 VHGHV-VRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLG 198
Query: 124 CGRQ-------------------------------ALQLFSLMIINGVFPDDVTFIALIS 152
R+ A++ F LM + G PDDV+ +A++
Sbjct: 199 QMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLP 258
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE- 209
AC+ G ++ G ++ A ++++ +T Y C +V+MY + G +++A M +
Sbjct: 259 ACAQLGALELGRWIY-AYCNRHQMLRET--YVCNALVEMYAKCGCIDQALQLFNGMAEKD 315
Query: 210 -AEWSVW-GALLNACRIHRNDEMFDPI-RQELVNKKGVS-VGTFALMSNT 255
WS G L R ++F + RQ V G++ VG + S+
Sbjct: 316 VISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHA 365
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV+WTTM+ GY + E A+ +F M PN+ T + L ACS ++AL
Sbjct: 286 MPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAG-TRPNQVTFLGALDACSDLAALCE 344
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I + V +A++N+Y KCG++G+A ++F++ KD+ISW+ +I+ A
Sbjct: 345 GKQVHQMI-CKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYA 403
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M NG P+DVT++ L+SACSH GLVD+GL +F++M I +
Sbjct: 404 HHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRD 463
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ RAG L++A+ I + I+ A SVW ALL C H N+ + + + L+
Sbjct: 464 EHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLL 523
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ L+SN +A A +W++A +IR E+ GLKK+ GCSWIEV
Sbjct: 524 QAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEV 572
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 81/156 (51%), Gaps = 12/156 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV++WTTM+ G A G +EA +F M + NV+S + IS +
Sbjct: 193 MPERDVMAWTTMVDGVARSGKVDEARVLFDSMPER-----------NVVSWNAMISGYTR 241
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + ++ N ++ +++ D+ A ++F+ + +++++W+T+++G
Sbjct: 242 NHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGY 301
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
AL LFS M++ G P+ VTF+ + ACS
Sbjct: 302 LKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACS 337
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DVVSWT ++ YA RG +A +F +A N T +LS + +
Sbjct: 69 PDWDVVSWTALVSAYARRGMLRDARELFDR----PDARRNVVTWTALLSGYARARLVDEA 124
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R N+V N ++ Y G VG A +F+ + +D SW+ +++ L
Sbjct: 125 EALFQRMPQR------NVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLV 178
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +LF M V + + ++ + G VD+ +LF +M P+
Sbjct: 179 RSGSVDKARELFGRMPERDV----MAWTTMVDGVARSGKVDEARVLFDSM-------PER 227
Query: 181 Q--HYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++ Y R ++EA +MP
Sbjct: 228 NVVSWNAMISGYTRNHRIDEALDLFMKMP 256
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 26/221 (11%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+VV+WT ++ GYA +EA ++FQ M + NV+S + + A +
Sbjct: 102 RRNVVTWTALLSGYARARLVDEAEALFQRMPQR-----------NVVSWNTMLEAYAAAG 150
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
V + + V + N ++ V+ G V A ++F + +D+++W+T++ G+A
Sbjct: 151 RVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVAR 210
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G +A LF M V V++ A+IS + +D+ L LF M P+
Sbjct: 211 SGKVDEARVLFDSMPERNV----VSWNAMISGYTRNHRIDEALDLFMKM-------PERD 259
Query: 182 HYACVVDMYG--RAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+C + + G + L+ A EMP E W ++N
Sbjct: 260 IASCNIMVTGFIQNKDLKRARELFDEMP-ERNVVTWTTMMN 299
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I G V A ++F+ D++SW+ ++S A G R A +LF
Sbjct: 46 NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDR------- 98
Query: 142 PDD----VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGL 195
PD VT+ AL+S + LVD+ LF+ M PQ + +++ Y AG
Sbjct: 99 PDARRNVVTWTALLSGYARARLVDEAEALFQRM-------PQRNVVSWNTMLEAYAAAGR 151
Query: 196 LEEAEAFIREMPIEAEWSVWGALL 219
+ +A A MP+ S W LL
Sbjct: 152 VGDACALFDRMPVRDAGS-WNILL 174
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW T+I GYA+ G EA+ V++ ME+ KE PN+ T V++L A + + AL G
Sbjct: 482 KDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMR 541
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + +L + V +I++Y KCG + A+ +F + + ++W+ +IS ++G
Sbjct: 542 IHGRV-IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHG 600
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ L+LF M+ GV PD VTF++L+SACSH G V++G F+ M Y I P +HY
Sbjct: 601 HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHY 659
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAG LE A FI++MP++ + S+WGALL ACRIH N E+ L
Sbjct: 660 GCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDS 719
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + L+SN +A +WE +K+R R GLKK G S IEVN +
Sbjct: 720 KNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKV 768
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW ++I Y + A F +M+ +P+ TLV++ S + + V
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQ-LNGFQPDLLTLVSLASIVAQSRDCKNSRSV 439
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I R L ++GNAV++MY K G + A +VF ++ KD+ISW+T+I+G A NG
Sbjct: 440 HGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGL 499
Query: 125 GRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A++++ +M + P+ T+++++ A +H G + QG+ + ++ H
Sbjct: 500 ASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHG------RVIKTNLHL 553
Query: 184 -----ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
C++D+YG+ G L +A + ++P E+ + W A+++ IH + E
Sbjct: 554 DVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVT-WNAIISCHGIHGHAE 603
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 19/238 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DV +W +MI Y G EA+ F ++ E P+ T VL AC + L
Sbjct: 177 IPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGT---LVD 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + + V ++I+MY + G GIA +F+ + ++DM SW+ +ISGL
Sbjct: 234 GRRIHCW-AFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLI 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG QAL + M + G+ + VT ++++ C G + +++ +Y I
Sbjct: 293 QNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIH-----LYVIKHGL 347
Query: 181 QHYACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ V ++MY + G LE+A ++M I S W +++ A +ND DP+
Sbjct: 348 EFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVS-WNSIIAA--YEQND---DPV 399
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 101/211 (47%), Gaps = 24/211 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI G + G +A+ V EM + + + N T+V++L C + +S
Sbjct: 276 MPFRDMGSWNAMISGLIQNGNAAQALDVLDEM-RLEGIKMNFVTVVSILPVCPQLGDIST 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y+ ++ L V NA+INMY K G++ A + F + D++SW+++I+
Sbjct: 335 AMLIHLYV-IKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYE 393
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N A F M +NG PD +T ++L S + HG ++ +G ++
Sbjct: 394 QNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDV 453
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+ VVDMY + GLL+ A
Sbjct: 454 VIG-----------NAVVDMYAKLGLLDSAH 473
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLM 135
S + ++N+Y GDV ++ F+ + KD+ +W+++IS NG +A+ F L+
Sbjct: 150 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLL 209
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
+++ + PD TF ++ AC G LVD I A ++ A ++ MY R G
Sbjct: 210 LVSEIRPDFYTFPPVLKAC--GTLVDGRRIHCWAFKLGFQW--NVFVAASLIHMYSRFGF 265
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVSV 246
A + +MP + W A+++ + N ++ D +R E + V+V
Sbjct: 266 TGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTV 319
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VS+T+MI YA+ G EEA+ +F EM+ E +P+ ++L+AC+++SA G+ +
Sbjct: 525 DLVSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQL 583
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +Y + GN+++NMY KCG + A + F+ L + ++SWS +I GLA +G
Sbjct: 584 HVHI-LKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 642
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
GRQALQLF+ M+ GV P+ +T ++++ AC+H GLV + + F++M ++ P +HYA
Sbjct: 643 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 702
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ GRAG + EA + +MP EA SVWGALL A RIH++ E+ + L +
Sbjct: 703 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 762
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
GT L++N +A A +WE+ ++R +R +KK+ G SWIEV ++
Sbjct: 763 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVY 811
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 10/224 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+VVSW + Y + FC EAV +F EM + +PNE +L ++++AC+ + S
Sbjct: 218 IPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSG-IKPNEFSLSSMVNACTGLRDSSR 276
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y I YD NA+++MY K GD+ AI VF + D++SW+ VI+G
Sbjct: 277 GKIIHGYLIKLGYDWD--PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGC 334
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++ QAL+L M +G+ P+ T + + AC+ GL + G L S++ ++ +
Sbjct: 335 VLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLH---SSLMKMDME 391
Query: 180 TQHYACV--VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + V VDMY + LLE+A +P E + W A+++
Sbjct: 392 SDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 434
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 143/280 (51%), Gaps = 15/280 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSW+ +I GYA+ G A+ F EM + NE T +VL ACS + L G+ V
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQV 179
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-LAMNG 123
H + V N ++ MY KC + + ++F+ + ++++SW+ + S + ++
Sbjct: 180 HGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDF 238
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTV-YEIVPQT 180
CG +A+ LF M+++G+ P++ + ++++AC+ GL D +G I+ + + Y+ P +
Sbjct: 239 CG-EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFS 295
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ +VDMY + G L +A + ++ + + W A++ C +H + E + ++
Sbjct: 296 AN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHEQALELLGQM-K 351
Query: 241 KKGVSVGTFALMS--NTFAGADRWEDANKIRDEIRRMGLK 278
+ G+ F L S AG E ++ + +M ++
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDME 391
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 5/253 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+++W +I GY++ EA+S+F EM K + N+ TL +L + + + +
Sbjct: 420 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHV 478
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH +S + V N++I+ Y KC V A ++F D++S++++I+ A
Sbjct: 479 CRQVHG-LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 537
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G +AL+LF M + PD +L++AC++ +QG L + Y V
Sbjct: 538 QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDI 596
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+V+MY + G +++A E+ E W A++ H + + +++
Sbjct: 597 FAGNSLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQML- 654
Query: 241 KKGVSVGTFALMS 253
K+GVS L+S
Sbjct: 655 KEGVSPNHITLVS 667
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 102/214 (47%), Gaps = 15/214 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + D+VSW +I G E+A+ + +M+++ PN TL + L AC+ +
Sbjct: 319 IKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC-PNIFTLSSALKACAGMGLKEL 377
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS + + D+ V +++MY KC + A FN+L KD+I+W+ +ISG +
Sbjct: 378 GRQLHSSL-MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYS 436
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+AL LF M G+ + T ++ + + GL + V+ + ++
Sbjct: 437 QYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCRQVHGLSVKS 489
Query: 181 QHYA------CVVDMYGRAGLLEEAEAFIREMPI 208
++ ++D YG+ +E+AE E I
Sbjct: 490 GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI 523
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P + +LS C + +L G +H++I T+ LS + N +IN+Y KC + G A +
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHI-TKSGLSDDPSIRNHLINLYSKCRNFGYARK 112
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+ + + D++SWS +ISG A NG G AL F M + GV ++ TF +++ ACS
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 168/249 (67%), Gaps = 3/249 (1%)
Query: 45 LVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+ +L AC+S++AL G+ VH+ I ++L VS V N +++MY KCG + A +VF+
Sbjct: 1 MAGILRACASVAALEQGKQVHADIIKIGFELDVS--VSNGLVDMYGKCGRIEDAQEVFSK 58
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
L D+ SW+ +ISGLA +GCG++A+ LF M+ GV P+ +TF+ ++S CSH GLVD+G
Sbjct: 59 LLEPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEG 118
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 223
F +M+ + I P+ +HY+C+VD++GRAG L+EA FI +MP+E SVWG+LL ACR
Sbjct: 119 RNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACR 178
Query: 224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283
+H N E+ + ++L+ + GT+ L+SN +A A RW+DA K+R ++ +KK+ GC
Sbjct: 179 VHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGC 238
Query: 284 SWIEVNPSI 292
SWIEV +
Sbjct: 239 SWIEVQNKV 247
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV SW MI G A+ G +EAV +F++M +T +PN+ T V VLS CS + G+
Sbjct: 63 DVASWNAMISGLAQHGCGKEAVLLFEQMLQTG-VKPNQITFVVVLSGCSHAGLVDEGRNY 121
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGLAMNG 123
++ + +S + +++++ + G + A+ N + + S W +++ ++G
Sbjct: 122 FDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHG 181
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 181/288 (62%), Gaps = 4/288 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V W+++I G+A+ +EA+ +F+ M++ + TL +VL AC+ ++ L G+ V
Sbjct: 128 DLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFL-AQQTTLTSVLRACTGLALLELGRQV 186
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ +YD + ++ NA+++MY KCG + A VF + KD+ISWST+I+GLA NG
Sbjct: 187 HVHV-LKYDQDL--ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGY 243
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL+LF M + G+ P+ VT + ++ ACSH GLV++GL F +M ++ I P +HY
Sbjct: 244 SKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYG 303
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ GRAG L EA I EM E + W ALLNACR+HRN ++ ++++
Sbjct: 304 CMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQ 363
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A RW D ++R + G+KK+ GCSWIEV+ I
Sbjct: 364 DAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQI 411
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWTTMI Y+ ++A+ M + + PN T +VL AC + L
Sbjct: 26 MPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR-EGVRPNMFTYSSVLRACDGLFNL-- 82
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I++Y + G++ A++VF+ + D++ WS++I+G A
Sbjct: 83 -RQLHCCI-IKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFA 140
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQ 179
N G +AL+LF M G T +++ AC+ GL L + V+ ++
Sbjct: 141 QNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACT-------GLALLELGRQVHVHVLKY 193
Query: 180 TQHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
Q ++DMY + G LE+A A M +E + W ++
Sbjct: 194 DQDLILNNALLDMYCKCGSLEDANAVFVRM-VEKDVISWSTMI 235
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV+SW+TMI G A+ G+ +EA+ +F+ M K +PN T+V VL ACS +
Sbjct: 223 MVEKDVISWSTMIAGLAQNGYSKEALKLFESM-KVLGIKPNYVTIVGVLFACSHAGLVEE 281
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISG 118
G Y + + + +I++ + G + A+ + N M D ++W +++
Sbjct: 282 GLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 28/149 (18%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +INMYVK G + A VF+ + ++++SW+T+IS + +AL+ LM+ GV
Sbjct: 4 NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
P+ T+ +++ AC GL + Q + C++ + GL +++
Sbjct: 64 PNMFTYSSVLRACD-------GLFNLR------------QLHCCII----KIGL--DSDV 98
Query: 202 FIREMPIEAEWSVWGALLNACRIHRNDEM 230
F+R I+ +S WG L NA R+ DEM
Sbjct: 99 FVRSALIDV-YSRWGELENALRVF--DEM 124
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VS+T+MI YA+ G EEA+ +F EM+ E +P+ ++L+AC+++SA G+ +
Sbjct: 498 DLVSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQL 556
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +Y + GN+++NMY KCG + A + F+ L + ++SWS +I GLA +G
Sbjct: 557 HVHI-LKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGH 615
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
GRQALQLF+ M+ GV P+ +T ++++ AC+H GLV + + F++M ++ P +HYA
Sbjct: 616 GRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA 675
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ GRAG + EA + +MP EA SVWGALL A RIH++ E+ + L +
Sbjct: 676 CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPE 735
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
GT L++N +A A +WE+ ++R +R +KK+ G SWIEV ++
Sbjct: 736 KSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVY 784
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 37/224 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+VVSW + Y + FC EAV +F EM + +PNE +L ++++AC+ + S
Sbjct: 218 IPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSG-IKPNEFSLSSMVNACTGLRDSSR 276
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y I YD NA+++MY K GD+ AI VF + D++SW+ VI+G
Sbjct: 277 GKIIHGYLIKLGYDWD--PFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGC 334
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++ QAL+L G + + S++ ++ +
Sbjct: 335 VLHEHHEQALELL------------------------------GQMKRQLHSSLMKMDME 364
Query: 180 TQHYACV--VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + V VDMY + LLE+A +P E + W A+++
Sbjct: 365 SDLFVSVGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 407
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 12/229 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSW+ +I GYA+ G A+ F EM + NE T +VL ACS + L G+ V
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQV 179
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-LAMNG 123
H + V N ++ MY KC + + ++F+ + ++++SW+ + S + +
Sbjct: 180 HGVVVVS-GFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDF 238
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLILFKAMSTV-YEIVPQT 180
CG +A+ LF M+++G+ P++ + ++++AC+ GL D +G I+ + + Y+ P +
Sbjct: 239 CG-EAVGLFYEMVLSGIKPNEFSLSSMVNACT--GLRDSSRGKIIHGYLIKLGYDWDPFS 295
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ +VDMY + G L +A + ++ + + W A++ C +H + E
Sbjct: 296 AN--ALVDMYAKVGDLADAISVFEKIK-QPDIVSWNAVIAGCVLHEHHE 341
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 125/253 (49%), Gaps = 5/253 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+++W +I GY++ EA+S+F EM K + N+ TL +L + + + +
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHV 451
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH +S + V N++I+ Y KC V A ++F D++S++++I+ A
Sbjct: 452 CRQVHG-LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYA 510
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G +AL+LF M + PD +L++AC++ +QG L + Y V
Sbjct: 511 QYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDI 569
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+V+MY + G +++A E+ E W A++ H + + +++
Sbjct: 570 FAGNSLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQML- 627
Query: 241 KKGVSVGTFALMS 253
K+GVS L+S
Sbjct: 628 KEGVSPNHITLVS 640
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P + +LS C + +L G +H++I T+ LS + N +IN+Y KC G A +
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHI-TKSGLSDDPSIRNHLINLYSKCRXFGYARK 112
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+ + + D++SWS +ISG A NG G AL F M + GV ++ TF +++ ACS
Sbjct: 113 LVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY- 63
D S ++ YA+ G +A+SVF+++++ N VL + GQ
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351
Query: 64 --VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+HS + + D+ V +++MY KC + A FN+L KD+I+W+ +ISG +
Sbjct: 352 RQLHSSL-MKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQ 410
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+AL LF M G+ + T ++ + + GL + V+ + ++
Sbjct: 411 YWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA-------GLQVVHVCRQVHGLSVKSG 463
Query: 182 HYA------CVVDMYGRAGLLEEAEAFIREMPI 208
++ ++D YG+ +E+AE E I
Sbjct: 464 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI 496
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW MI Y + G E + ++ M ++ P+E TL VLSAC L+
Sbjct: 307 MPERNIVSWNAMISCYVQCGRLHETLDLYNRM-RSLGITPDEFTLAGVLSACGQNGDLAS 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ ++ L+ N++++MY +CG V AI +F + K++ISW+ +I LA
Sbjct: 366 GKMIHCYVRDNFNDPGVTLL-NSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALA 424
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++ + F M+ + PD++TF+ L+SACSHGGL++ G F+AM+ VY + P+
Sbjct: 425 MHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEV 484
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G L +A I++M I+ + VWGALL ACRIH N E+ + ++L+
Sbjct: 485 EHYGCMVDLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLE 544
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G++ G F L+ N F ++WED K+R ++ G KK G S IEV I
Sbjct: 545 LEGITGGLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNII 596
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 123/256 (48%), Gaps = 35/256 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW TMIGGYA+ G EA ++F EM + + + TLV++L ACSS L
Sbjct: 175 MADRNVVSWNTMIGGYAQAGEVSEACALFGEM-RHQGLLADVFTLVSLLFACSSEGNLEV 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G+ VH ++ V ++GNA+++MY KCGD+ +A + F+M+ K+
Sbjct: 234 GRLVHCHMLVSGS-RVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
++SW+ +IS G + L L++ M G+ PD+ T
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAG 352
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SAC G + G ++ + + P ++DMY R G ++ A EMP +
Sbjct: 353 VLSACGQNGDLASGKMIHCYVRDNFND-PGVTLLNSLLDMYARCGQVDTAIGLFTEMPNK 411
Query: 210 AEWSVWGALLNACRIH 225
S W ++ A +H
Sbjct: 412 NVIS-WNVIIGALAMH 426
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 129/277 (46%), Gaps = 7/277 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D + T++ Y+ +EA+ + + + + + PNE TL VL AC+++ A+
Sbjct: 74 IPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQ-RGILPNEFTLPFVLKACTTVRAVEH 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
H + + V NA+++ + G + + + F +A ++++SW+T+I G A
Sbjct: 133 ALAAHGVV-VKLGFVQQIFVANALLHFHASAGSLRDSRRFFGEMADRNVVSWNTMIGGYA 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A LF M G+ D T ++L+ ACS G ++ G ++ M V +
Sbjct: 192 QAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRI 251
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
A ++DMYG+ G L A MPI+ W ++L A H + D +R
Sbjct: 252 LGNA-LLDMYGKCGDLWMAHRCFDMMPIK-NVVTWTSMLCAQAKHGS---VDAVRDWFEQ 306
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ ++ M + + R + + + +R +G+
Sbjct: 307 MPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGI 343
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD ++WT MI GY + G +A+ F+ M+ K +E T+V+V++AC+ + AL
Sbjct: 253 MPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICK-VRADEFTMVSVVTACAQLGALET 311
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ Y+ R + + VGNA+I+MY KCG + A+ VF + +D +W+ +I GLA
Sbjct: 312 GEWARIYMG-RLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLA 370
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +A+ +F M+ PD+VTF+ +++AC+H GLVD+G F +M+ Y I P
Sbjct: 371 VNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTV 430
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C++D+ GRAG L+EA I +MP++ ++WG LL +CR++ N E+ + + L+
Sbjct: 431 VHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLE 490
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN +A ++RW+D +IR I G+KK+ GCS IE+N
Sbjct: 491 LDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMN 539
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V W +I G+ G E + F +M + A T V+VLSAC L G VH
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRA-SAMATAVTYVSVLSACGKGKDLLLGMQVHK 185
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG--- 123
+ L V NA+++MY +CGD+ A +F + + M SW++VISGL +G
Sbjct: 186 RVLESGVLP-DQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVD 244
Query: 124 --------------------------CG--RQALQLFSLMIINGVFPDDVTFIALISACS 155
G R AL+ F M I V D+ T +++++AC+
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304
Query: 156 HGGLVDQG---LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
G ++ G I + ++ ++DMY + G +E A ++M ++
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGN----ALIDMYSKCGSIERALDVFKDMHNRDKF 360
Query: 213 SVWGALLNACRIH-RNDEMFD 232
+ W A++ ++ R +E D
Sbjct: 361 T-WTAIILGLAVNGRGEEAID 380
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 192/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD ++W MI GYA+ G EA++VF M+ + + N +++VLSAC+ + AL
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQ-LEGVKVNGVAMISVLSACTQLGALDQ 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ HSYI R + ++ + ++++Y KCGD+ A++VF + K++ +WS+ ++GLA
Sbjct: 259 GRWAHSYIE-RNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLA 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + L+LFSLM +GV P+ VTF++++ CS G VD+G F +M + I PQ
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+Y RAG LE+A + I++MP++ +VW +LL+A R+++N E+ ++++
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A ++ W++ + +R ++ G++K+ GCS +EVN +
Sbjct: 438 LETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ +CGDV A ++F + +D I+W+ +ISG A G R+AL +F LM + GV
Sbjct: 179 AMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKV 238
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+ V I+++SAC+ G +DQG + +I + +VD+Y + G +E+A
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIER-NKIKITVRLATTLVDLYAKCGDMEKAMEV 297
Query: 203 IREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
M E W + LN ++ + E+F ++Q+ V V+
Sbjct: 298 FWGME-EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 185/287 (64%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK+D++SW++MI GY++ +A+ +F++M++ K +P+ + +V+S+C+ + AL
Sbjct: 745 IPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAK-VKPDAIVIASVVSSCAHLGALDL 803
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ R ++ ++ N++I+MY+KCG A+QVF + KD +SW+++I GLA
Sbjct: 804 GKWVHEYVR-RNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 862
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +++L LF M+ G P+ VTF+ ++ AC++ LV++GL F++M +Y + PQ
Sbjct: 863 NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQM 922
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG LE+A FI EMPI+ + VW LL +C H + + + + ++L
Sbjct: 923 KHYGCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNE 982
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + L+SN +A A RW +A +R + ++K GCS +E
Sbjct: 983 LEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 165/270 (61%), Gaps = 3/270 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSW+ MI GY EAV++F+ M + P+E T++ V+ A S++ +
Sbjct: 181 MPCRNVVSWSGMIDGYTRACRPVEAVALFRRM-MAEGISPSEITVLAVVPALSNVGKILI 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGL 119
G+ +H Y + L VGN++I++Y K G + +++VF+ ML ++++SW+++ISG
Sbjct: 240 GEALHGYCE-KEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGF 298
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G +A++LF+ M G+ P+ +TF++++ ACSHGGLV+QG+ FK+M Y I P
Sbjct: 299 AMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPD 358
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C++DM GRAG L EAE IR+ P+E +VW LL C + EM + ++++
Sbjct: 359 VKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKIL 418
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIR 269
+ G F ++SN R+ DA +R
Sbjct: 419 ALEREFGGDFVVLSNMLTELRRFSDAEIVR 448
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 137/274 (50%), Gaps = 15/274 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I G A+ +A++ +++ + P+ T +L AC+ I+AL+ G+ +H++I
Sbjct: 520 WNILIRGLAQSDAPADAIAFYKKAQGGGMV-PDNLTFPFILKACARINALNEGEQMHNHI 578
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
T+ L V N++I++Y CG++ A VF+ + KD++SW+++I G + +
Sbjct: 579 -TKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDI 637
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L LF LM GV D VT I ++SAC+ G + + + Y I +VD
Sbjct: 638 LALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIED-YCIEVDVYLGNTLVD 696
Query: 189 MYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHRNDEMFDPI-RQELVNKKGV 244
+GR G L+ AE M + ++ A I ++FD I +++L+
Sbjct: 697 YFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLI----- 751
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+++ M + ++ A+ + DA +I +++R +K
Sbjct: 752 ---SWSSMISGYSQANHFSDALEIFRQMQRAKVK 782
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 122/249 (48%), Gaps = 33/249 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DVVSW ++I GY++ ++ +++F+ M+ + + ++ T++ V+SAC+ + S
Sbjct: 613 MVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ-NEGVKADKVTMIKVVSACTRLGDYSM 671
Query: 61 GQYVHSYISTR-----------------------------YDLSVSNLVG-NAVINMYVK 90
Y+ YI +++ V N+V NA+I Y K
Sbjct: 672 ADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAK 731
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
D+ A ++F+ + KD+ISWS++ISG + AL++F M V PD + ++
Sbjct: 732 GQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASV 791
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+S+C+H G +D G + + + I T ++DMY + G +EA +EM E
Sbjct: 792 VSSCAHLGALDLGKWVHEYVRR-NNIKADTIMENSLIDMYMKCGSAKEALQVFKEMK-EK 849
Query: 211 EWSVWGALL 219
+ W +++
Sbjct: 850 DTLSWNSII 858
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 110/270 (40%), Gaps = 43/270 (15%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-------- 55
R W ++ Y+ ++A+ +F+ A + L AC+ +
Sbjct: 53 RRPTPWHALLKAYSHGPHPQDALQLFRHARW--HAADDTYAFTFALKACAGLGWPRCCMQ 110
Query: 56 -------SALSFGQYVHSYISTRY--------------DLSVSNLVG-NAVINMYVKCGD 93
F YVH+ + Y ++ V N V N VI + G+
Sbjct: 111 LHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGE 170
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
V A +F + ++++SWS +I G +A+ LF M+ G+ P ++T +A++ A
Sbjct: 171 VEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPA 230
Query: 154 CSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
S+ G +++ +A+ E +V + ++D+Y + G ++ + EM
Sbjct: 231 LSNVG----KILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRR 286
Query: 211 EWSVWGALLNACRIH----RNDEMFDPIRQ 236
W ++++ +H + E+F +R+
Sbjct: 287 NLVSWTSIISGFAMHGLSVKAVELFADMRR 316
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D+ A +VF+ + W+ +I GLA + A+ + G+ PD++TF ++
Sbjct: 501 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 560
Query: 153 ACSHGGLVDQG 163
AC+ +++G
Sbjct: 561 ACARINALNEG 571
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +SW++M+ GY G +EA+ +FQ+M++ +E P L +VL+ACS+I A+
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQ 312
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ R + + ++G A+++MY KCG + + +VF + +++ +W+ +I GLA
Sbjct: 313 GRWVHAYLK-RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLA 371
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G AL+LFS + + P+ +T + +++AC+H G VD+GL +F+ M Y + P+
Sbjct: 372 IHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPEL 431
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+GL EAE I MP++ +VWGALL ACRIH N ++ + + + L+
Sbjct: 432 EHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLE 491
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A R++D +KIR ++ G+K G S +++N ++
Sbjct: 492 LEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTV 543
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 55/250 (22%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV W TMI GY + G E A +F +M
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQM-------------------------------- 223
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V N+ N +IN K G++G A ++F+ ++ +D ISWS+++ G G
Sbjct: 224 ----------PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL---ILFKAMSTVYEIVPQT 180
++AL++F M P ++++ACS+ G +DQG K S + V T
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT 333
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++DMY + G L+ EM E E W A++ IH E+F +++
Sbjct: 334 ----ALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
Query: 237 ELVNKKGVSV 246
+ G+++
Sbjct: 389 GRMKPNGITL 398
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 104/253 (41%), Gaps = 37/253 (14%)
Query: 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC--GDVGIAIQVFNMLAYKDMI 110
SI++L + +H+ + R + V A++ Y + A++VF+ + ++
Sbjct: 41 KSITSLQYLTQLHALV-LRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVF 99
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGL 159
W+ VI G N +A+ + M+I+ P+ T+ L ACS HG +
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHV 158
Query: 160 VDQGL------------------ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V G+ L A Y + ++D Y + G+LE A+
Sbjct: 159 VKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKG 218
Query: 202 FIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261
+MP++ S W ++N N + E+ + +S ++ M + + A R
Sbjct: 219 LFAQMPVKNIGS-WNVMINGLAKGGNLGDARKLFDEMSERDEIS---WSSMVDGYISAGR 274
Query: 262 WEDANKIRDEIRR 274
+++A +I +++R
Sbjct: 275 YKEALEIFQQMQR 287
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+WT +I GY + ++ + VF+EM K+ A PNE TL +VLSAC+ + AL
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + + ++ G +I++YVKCG + AI VF L K++ +W+ +I+G A
Sbjct: 325 GRRVHCYM-IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R A LF M+ + V P++VTF+A++SAC+HGGLV++G LF +M + + +
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMELKA 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD++GR GLLEEA+A I MP+E VWGAL +C +H++ E+ ++
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N ++ + W++ ++R +++ + K G SWIEV
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 3/222 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WT MI G+ G EA+ F EM+KT A NE T+V+VL A + + FG+
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA-ANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + +G+++++MY KC A +VF+ + +++++W+ +I+G +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
C + + +F M+ + V P++ T +++SAC+H G + +G + M I T
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM-IKNSIEINTTAG 344
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D+Y + G LEEA + E E W A++N H
Sbjct: 345 TTLIDLYVKCGCLEEA-ILVFERLHEKNVYTWTAMINGFAAH 385
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +L A + + Q+ H++I ++ L V N++I+ Y G A +
Sbjct: 102 PSRHTFPPLLKAVFKLRDSNPFQF-HAHI-VKFGLDSDPFVRNSLISGYSSSGLFDFASR 159
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ KD+++W+ +I G NG +A+ F M GV +++T ++++ A
Sbjct: 160 LFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVED 219
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEW 212
V G +V+ + +T C +VDMYG+ ++A+ EMP
Sbjct: 220 VRFG-------RSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNV 271
Query: 213 SVWGALL 219
W AL+
Sbjct: 272 VTWTALI 278
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + ++SW M+ GYA+ G + +++ M+ P+ TLV VLS+C+++ A S
Sbjct: 213 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQSV 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G V I + + + NA+INMY +CG++ A VF+ + + ++SW+ +I G
Sbjct: 272 GHEVEFKIQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 330
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+QLF MI +G+ PD F+ ++SACSH GL DQGL FK M Y++ P
Sbjct: 331 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 390
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EA+ I MPI+ + +VWGALL AC+IH+N E+ + + ++
Sbjct: 391 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 450
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++G + L+SN ++ A+ + +IR ++ LKK GCS++E+
Sbjct: 451 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVEL 498
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 128/240 (53%), Gaps = 10/240 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFG 61
++ V + ++ GY C EAV +F++M +E P N TL+ ++ AC S L G
Sbjct: 114 RKLTVCYNALVSGYVSNSKCSEAVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELG 171
Query: 62 QYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H S + +D VS V N I MY+KCG V A ++F+ + K +ISW+ ++SG A
Sbjct: 172 SSLHCSTLKYGFDSDVS--VVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYA 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
NG L+L+ M +NGV PD VT + ++S+C++ G G + FK ++ + P
Sbjct: 230 QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPF 289
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ +++MY R G L +A+A MP E W A++ +H + E+ + +E++
Sbjct: 290 LNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 346
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 102/234 (43%), Gaps = 16/234 (6%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W T + A+R +A+S++ +M + + PN T L +C+++S G H I
Sbjct: 17 WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 75
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLAMNGCGR 126
T+ V +I+MY K V A +VF N + K + ++ ++SG N
Sbjct: 76 -TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 134
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
+A+ LF M GV + VT + LI AC ++ G L + Y C
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL-HCSTLKYGFDSDVSVVNCF 193
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----------NACRIHRNDEM 230
+ MY + G + A+ EMP++ S W A++ N ++RN +M
Sbjct: 194 ITMYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSGYAQNGLATNVLELYRNMDM 246
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD +SW ++I G + G +E + F++M K +P + +++ AC+ ++ L
Sbjct: 361 LTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHL 419
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI TR + + +++++MY KCG++ A Q+F+ + +DM+SW+ +I G A
Sbjct: 420 GKQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCA 478
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A++LF M G+ P+ V F+A+++ACSH GLVD+ F +M+ + I P
Sbjct: 479 LHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGV 538
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA V D+ GRAG LEEA FI MPI SVW LL+ACR+H+N +M + + ++
Sbjct: 539 EHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILE 598
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N ++ A RW++A K R +RR G++K CSWIEV ++
Sbjct: 599 VDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVY 651
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 121/241 (50%), Gaps = 8/241 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW T+I G A G E +++ +EM +P+ TL +VL + +S
Sbjct: 260 MPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN-LKPDSFTLSSVLPLIAENVDISK 318
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H S R L V +++I+MY KC V + +VF +L +D ISW+++I+G
Sbjct: 319 GKEIHG-CSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCV 377
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + L+ F M++ + P +F +++ AC+H + G L + T
Sbjct: 378 QNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENI 436
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+ +VDMY + G + A M + S W A++ C +H + E+F+ ++
Sbjct: 437 FIASSLVDMYAKCGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGHALDAIELFEQMKT 495
Query: 237 E 237
E
Sbjct: 496 E 496
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
++W ++I Y G +++ F M + P+ +VL AC+ + L+ G+ +H
Sbjct: 74 LAWKSVIRCYTSHGLPHKSLGSFIGMLASG-LYPDHNVFPSVLKACAMLMDLNLGESLHG 132
Query: 67 YISTRYDLSVSNLVGNAVINMYVK 90
YI R L GNA++NMY K
Sbjct: 133 YI-IRVGLDFDLYTGNALMNMYSK 155
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
++++FN L + ++W +VI +G ++L F M+ +G++PD F +++ AC+
Sbjct: 61 SLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA 119
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS--- 155
++F M+ KD++SW+T+I+G A NG + L + M + PD T +++ +
Sbjct: 255 KIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENV 314
Query: 156 --------HGGLVDQGL 164
HG + QGL
Sbjct: 315 DISKGKEIHGCSIRQGL 331
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 185/294 (62%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW +MI Y G EA+ +F +M ++ P+EATLV++L+ACS + L
Sbjct: 353 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVM 411
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+YI S + V+ + N++I+MY KCG V A+ +F + K+++SW+ +I L
Sbjct: 412 GKKIHNYILSNKGAYGVT--LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGAL 469
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++GCG +A++LF M +G PD++T L+SACSH GLVD GL F M +Y + +
Sbjct: 470 ALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXRE 529
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR GLL EA I MP++ + VWGALL ACRIH N E+ I ++L+
Sbjct: 530 IEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLL 589
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ S G + L+SN + A RWED KIR + G+KK S IE++ I+
Sbjct: 590 ELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIY 643
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 10/148 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
++I+ Y + G + +A Q+F+ + K+++SW+++IS G R+AL LF+ M + V
Sbjct: 331 TSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV 390
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH----YACVVDMYGRAGLLE 197
PD+ T +++++ACS G L++ K + Y + + + Y ++DMY + G +
Sbjct: 391 PDEATLVSILAACSQLG----DLVMGKKIHN-YILSNKGAYGVTLYNSLIDMYAKCGPVV 445
Query: 198 EAEAFIREMPIEAEWSVWGALLNACRIH 225
A EMP + S W ++ A +H
Sbjct: 446 TALDIFLEMPGKNLVS-WNVIIGALALH 472
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + + ++I GY+ +AV +F+ M PNE TL VL AC SA
Sbjct: 174 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRM-ICSGLSPNEFTLPFVLKACGCKSAYWE 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV--ISG 118
VH ++ + + V NA+I +YV CG + A ++F+ + K ++SW+++ I+G
Sbjct: 233 AVLVHG-LAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITG 291
Query: 119 LAMNGCGRQAL 129
+ ++ R AL
Sbjct: 292 VKIDIIVRNAL 302
>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 760
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT++I G A+ G EA+ +F+EM+ +PN T+ ++L AC +I+AL G+
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGVKPNRVTIPSMLPACGNIAALGHGRST 410
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + R L VG+A+I+MY KCG + ++ VFNM+ K+++ W+++++G +M+G
Sbjct: 411 HGF-AVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGK 469
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++ + +F ++ + PD ++F +L+SAC GL D+G F MS Y I P+ +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYS 529
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V++ GRAG L+EA I+E+P E + VWGALLN+CR+ N ++ + Q+L + +
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPE 589
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ LMSN +A W + + IR+++ +GLKK GCSWI+V ++
Sbjct: 590 NPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVY 638
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 39/256 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++VSW ++ G+ G+ +EAV +FQ+M P++ T+ +VL + L+ G+ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFC-PDQVTVSSVLPSVGDSENLNMGRQI 274
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDV-GI--------------------------- 96
H Y+ + L V +A+++MY K G V GI
Sbjct: 275 HGYV-IKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGL 333
Query: 97 ---AIQVFNMLAYKDM----ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
A+++F + + M +SW+++I+G A NG +AL+LF M + GV P+ VT +
Sbjct: 334 VDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPS 393
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC + + G V+ ++ + ++DMY + G ++ ++ MP +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVH-LLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452
Query: 210 AEWSVWGALLNACRIH 225
W +L+N +H
Sbjct: 453 -NLVCWNSLMNGYSMH 467
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 109/228 (47%), Gaps = 36/228 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P V S++++I + +++ VF M + P+ L N+ C+ +SA
Sbjct: 76 IPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMF-SHGLIPDTHVLPNLFKVCAELSAFKA 134
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ L + V ++ +MY++CG +G A +VF+ ++ KD+++ S ++ G A
Sbjct: 135 GKQIHC-VACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYA 193
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS--------- 171
GC + +++ S M +G+ P+ V++ ++S + G + +I+F+ M
Sbjct: 194 RKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQV 253
Query: 172 TVYEIVP------------QTQHYA---------CVV----DMYGRAG 194
TV ++P Q Y CV+ DMYG++G
Sbjct: 254 TVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSG 301
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V W +++ GY+ G +E +S+F+ + +T+ +P+ + ++LSAC +
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G + +S Y + + ++N+ + G + A + + ++ D W G
Sbjct: 508 GWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVW-----GA 562
Query: 120 AMNGCGRQ 127
+N C Q
Sbjct: 563 LLNSCRLQ 570
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 179/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+V+WT MIGGYAE G E++ +F +M + + P++ +V V+ AC+ + A+
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKM-REEGVVPDKVAMVTVVFACAKLGAMHK 351
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + YI R + ++G A+I+M+ KCG V A ++F+ + K++ISWS +I+
Sbjct: 352 ARTIDDYIQ-RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 410
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL LF +M+ +G+ P+ +T ++L+ ACSH GLV++GL F M Y +
Sbjct: 411 YHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADV 470
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG L+EA I M +E + +WGA L ACR H++ + + L+
Sbjct: 471 KHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLE 530
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN +A A RWED K RD + + LKK G +WIEV+
Sbjct: 531 LQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVD 579
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 152/282 (53%), Gaps = 19/282 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+WT MIGGYAE G E++ +F++M + + P++ +V V+ AC+ + A+
Sbjct: 91 MQERDLVTWTVMIGGYAECGKANESLVLFEKM-REEGVVPDKVAMVTVVFACAKLGAMHK 149
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + YI R + ++G A+I+MY KCG V A ++F+ + K++ISWS +I+
Sbjct: 150 ARIIDDYIQ-RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 208
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL LF +M+ +G+ PD +T +L+ ACS + G ++ VY+
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIH---HIVYKFGLDL 265
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVW----GALLNACRIHRNDEMFDPI 234
H+ C +VDMYG+ +E+A +MP E + W G + + +FD +
Sbjct: 266 DHFVCAALVDMYGKCREIEDARFLFDKMP-ERDLVTWTVMIGGYAECGNANESLVLFDKM 324
Query: 235 RQELVNKKGVSVGTFALMSNTFAGAD--RWEDANKIRDEIRR 274
R+E GV A+++ FA A A I D I+R
Sbjct: 325 REE-----GVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 361
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 10/217 (4%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
M+GG+A+ G F+E+ + A P+ TL V+ AC + L G+ +H +I +
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIH-HIVYK 58
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
+ L + + V A+++MYVKC ++ A +F+ + +D+++W+ +I G A G ++L L
Sbjct: 59 FGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVL 118
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIVPQTQHYACVVD 188
F M GV PD V + ++ AC+ G + + I+ + +++ T ++D
Sbjct: 119 FEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA----MID 174
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
MY + G +E A M E W A++ A H
Sbjct: 175 MYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYH 210
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 181/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A+ G EEA +F +M K E + A +V++L+AC+ +L+
Sbjct: 273 MPTKNLVTWTIMVSACAQNGLVEEAGKLFTQM-KEASVELDVAAVVSILAACAESGSLAL 331
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H Y+ TR L S V NA+I+M+ KCG + A VF+ + KD +SW+T+I G
Sbjct: 332 GKRIHRYVRTR-QLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGF 390
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL F+ M + G PD VT I ++SAC+H G V++G F M Y +VPQ
Sbjct: 391 AMHGHGDKALDFFAQMKLQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQ 450
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ GR GL++EA I+ MP + +WG+LL+ACR+H+N E + EL
Sbjct: 451 IEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELS 510
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +A++S+ +A A +W D K R +++ G +K +G SWIE++
Sbjct: 511 KLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQMKGTGSQKSSGSSWIELD 560
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 109/235 (46%), Gaps = 16/235 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP+RDVVSW + + +G E A +F EM + N TL++ + + A
Sbjct: 180 MPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWN--TLLDGYTKAGDVEEAFK 237
Query: 60 FGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
Q + N+V + V++ Y K GD+ +A +F+ + K++++W+ ++S
Sbjct: 238 LFQC----------MPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSA 287
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NG +A +LF+ M V D +++++AC+ G + G + + + T ++
Sbjct: 288 CAQNGLVEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRT-RQLGR 346
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
T ++DM+ + G + A+ +E + W ++ +H D+ D
Sbjct: 347 STHVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALD 401
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 21/215 (9%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
T++ YA EAV+VF M + T ++ A SS + VHS++
Sbjct: 93 NTLLRAYALNALPREAVAVFSAMPHR-----DSFTYSFLIKALSSAGVAPL-RAVHSHVV 146
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
+ VGNA+I+ Y K G A +VF + +D++SW++ ++ + G A
Sbjct: 147 KLGSIE-DTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGAR 205
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVV 187
++F M+ D V++ L+ + G V++ LF+ M P+ ++ VV
Sbjct: 206 RMFDEMLEK----DTVSWNTLLDGYTKAGDVEEAFKLFQCM-------PERNVVSWSTVV 254
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
Y + G +E A +MP + W +++AC
Sbjct: 255 SGYCKKGDMEMARVIFDKMPTK-NLVTWTIMVSAC 288
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 177/292 (60%), Gaps = 3/292 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD++SW MI Y + +A+ +F M EAEPN T++NVLS+ + ++ L G
Sbjct: 520 PDRDLISWNAMIASYVKNNQAHKALLLFHRM--ISEAEPNSVTIINVLSSFTHLATLPQG 577
Query: 62 QYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H+Y++ R + L + + NA I MY +CG + A +F L +++ISW+ +I+G
Sbjct: 578 QSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYG 637
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G A+ FS M+ +G P+ VTF++++SACSH G ++ GL LF +M + + P+
Sbjct: 638 MNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFHSMVQDFNVTPEL 697
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ R G ++EA FI MPIE + SVW ALL++CR + + + I ++L
Sbjct: 698 VHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDAKQAKTIFEKLDK 757
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++ G + L+SN +A A W + +IR ++ GL+K G SWI V +
Sbjct: 758 LEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIVKNQV 809
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 108/204 (52%), Gaps = 4/204 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++SW TMI A +A +F+ M ++ E +PN T++++L+AC ++ L FG+ +
Sbjct: 422 DIISWNTMILALARNTLRAQACELFERMRES-EIKPNSYTIISILAACEDVTCLDFGRSI 480
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ ++ + ++ + A+ +MY+ CGD A +F +D+ISW+ +I+ N
Sbjct: 481 HGYV-MKHSIEINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQ 539
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHY 183
+AL LF M I+ P+ VT I ++S+ +H + QG L ++ + +
Sbjct: 540 AHKALLLFHRM-ISEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLA 598
Query: 184 ACVVDMYGRAGLLEEAEAFIREMP 207
+ MY R G L+ AE + +P
Sbjct: 599 NAFITMYARCGSLQSAENIFKTLP 622
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV W M+ GY G EEA+ + +EM + + PN T+V +L AC S L
Sbjct: 114 MSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGR-ENLRPNSRTMVALLLACEGASELRL 172
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y + V A+I Y++ D+ + +F+++ ++++SW+ +ISG
Sbjct: 173 GRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYY 231
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL+LF M+++ V D VT + + AC+ G + G + + ++ +E V
Sbjct: 232 DVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQ-LAIKFEFVEDL 290
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY G LE + +P + +W ++++A
Sbjct: 291 YILNALLNMYSNNGSLESSHQLFESVP-NRDAPLWNSMISA 330
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALS 59
+P RD W +MI YA G EEA+ +F M+ ++ + +E T+V +LS C + S L
Sbjct: 316 VPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQ-SEGVKKDERTVVIMLSMCEELASGLL 374
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+++ + + + +GNA+++MY + V ++F+ + D+ISW+T+I L
Sbjct: 375 KGKSLHAHV-IKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILAL 433
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
A N QA +LF M + + P+ T I++++AC +D G
Sbjct: 434 ARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFG 477
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSW MI GY + G +A+ +F +M E + + T++ + AC+ + +L
Sbjct: 215 MVVRNIVSWNAMISGYYDVGDYFKALELFVQM-LVDEVKFDCVTMLVAVQACAELGSLKL 273
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ +++ + NA++NMY G + + Q+F + +D W+++IS A
Sbjct: 274 GKQIHQ-LAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYA 332
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
GC +A+ LF M GV D+ T + ++S C
Sbjct: 333 AFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMC 366
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D W ++I A + +S + +ME PN TL VL AC++ +A+ G+
Sbjct: 16 KDPKHWNSVIKHQANLKNDQAILSAYTQMESLG-VLPNNTTLPLVLKACAAQNAVERGKS 74
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H I DL VG AV++ Y KCG V A VF+ ++ +D++ W+ ++ G G
Sbjct: 75 IHRSIQGT-DLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWG 133
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISAC 154
C +A+ L M + P+ T +AL+ AC
Sbjct: 134 CYEEAMLLVREMGRENLRPNSRTMVALLLAC 164
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 39/196 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PKR+++SW MI GY G +A+ F +M + PN T V+VLSACS +
Sbjct: 621 LPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDG-FRPNGVTFVSVLSACSHSGFIEM 679
Query: 61 G-QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G Q HS +Q FN+ +++ +S ++ L
Sbjct: 680 GLQLFHSM------------------------------VQDFNVTP--ELVHYSCIVDLL 707
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A GC +A + M I PD + AL+S+C Q +F+ + + +
Sbjct: 708 ARGGCIDEAREFIDSMPIE---PDASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPM--N 762
Query: 180 TQHYACVVDMYGRAGL 195
+Y + ++Y AGL
Sbjct: 763 AGNYVLLSNVYATAGL 778
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
KD W++VI A + L ++ M GV P++ T ++ AC+ V++G +
Sbjct: 16 KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+++ +++ + VVD Y + G +E+A M + + +W A++
Sbjct: 76 HRSIQGT-DLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMS-DRDVVLWNAMV 126
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ ++SW MI Y + G EA+ ++ M+ A P+E TL VLSAC + L+
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLA-PDEFTLAAVLSACGQLGDLAS 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + L N++++MY +CG V AI +F+ + K++ISW+ +I LA
Sbjct: 362 GKMIHDCIRDNFHNPGVALF-NSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALA 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + AL F M+ + PD++TF+AL+SAC+HGGL++ G F+AM VY + P
Sbjct: 421 MHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGV 480
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G L +A I++MP+ + VWGALL ACRIH + ++ + ++L+
Sbjct: 481 EHYACMVDLLGRGGQLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLE 540
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G+S G F L+SN +WED ++R +R G+KK G S IE N +I
Sbjct: 541 LEGMSGGLFVLISNMLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNI 592
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 131/256 (51%), Gaps = 35/256 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW +MI GYA+ G EA S+F+ M + + +E TLV++L ACS+ L F
Sbjct: 171 MVDRNVVSWNSMINGYAQAGNTREACSLFEGMRR-QGLLADEFTLVSLLFACSAEGNLEF 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G+ VHS++ R + ++ NA+++MY KCGD+ +A F+M+ +K+
Sbjct: 230 GKLVHSHLLVR-GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ISW+ +IS G +AL L++ M + G+ PD+ T A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SAC G + G ++ + + P + ++DMY R G ++ A + EMP +
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFH-NPGVALFNSLLDMYARCGQVDTAISLFSEMPSK 407
Query: 210 AEWSVWGALLNACRIH 225
S W A++ A +H
Sbjct: 408 NVIS-WNAIIGALAMH 422
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 131/277 (47%), Gaps = 7/277 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + ++I Y +EA+ + + M + + PNE TL +L AC+ + A
Sbjct: 70 IPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIR-RGILPNEFTLPFLLKACARVQAWEH 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
H + + VGNA+++ Y G +G + + F+ + ++++SW+++I+G A
Sbjct: 129 VMVTHGVV-VKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYA 187
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+A LF M G+ D+ T ++L+ ACS G ++ G ++ + +
Sbjct: 188 QAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLI 247
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
A +VDMYG+ G L A MP + S W ++L C + + + D R
Sbjct: 248 LANA-LVDMYGKCGDLLMAHTCFDMMPFKNAVS-WTSML--CALAKRASI-DAARDWFEQ 302
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
S+ ++ M + + R+ +A + + ++ +GL
Sbjct: 303 IPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGL 339
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 178/294 (60%), Gaps = 8/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW +I GY + G EEA+S+F + K + P + N+L AC+ ++ L
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLL-KRESVCPTHYSFANILKACADLAELHL 404
Query: 61 GQYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
G H ++ ++ + VGN++I+MYVKCG V VF + +D +SW+
Sbjct: 405 GMQAHVHV-LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNA 463
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G A NG G +AL+LF M+ +G PD +T I ++SAC H G V++G F +M+ +
Sbjct: 464 MIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P HY C+VD+ GRAG LEEA++ I EMP++ + +WG+LL AC++HRN + +
Sbjct: 524 GVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYV 583
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++L+ + + G + L+SN +A +WED +R +R+ G+ K+ GCSWI++
Sbjct: 584 AEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 2/208 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +W +M+ G+A+ CEEA+ F M K NE + +VLSACS ++ ++
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFV-LNEYSFASVLSACSGLNDMNK 170
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VHS I+ LS +G+A+++MY KCG+V A +VF+ + ++++SW+++I+
Sbjct: 171 GVQVHSLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFE 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL +F +M+ + V PD+VT ++ISAC+ + G + + ++
Sbjct: 230 QNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDI 289
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPI 208
VDMY + ++EA MPI
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 44/258 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW ++I + + G EA+ VFQ M +++ EP+E TL +V+SAC+S+SA+
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR-VEPDEVTLASVISACASLSAIKV 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIA 97
GQ VH + L ++ NA ++MY KC + G A
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Query: 98 IQ--------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ +F +A ++++SW+ +I+G NG +AL LF L+ V P +F
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391
Query: 150 LISACS-----HGGLVDQGLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
++ AC+ H G+ +L FK S + + ++DMY + G +EE
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGN---SLIDMYVKCGCVEEGYL 448
Query: 202 FIREMPIEAEWSVWGALL 219
R+M +E + W A++
Sbjct: 449 VFRKM-MERDCVSWNAMI 465
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+V+ K G + A +F + +D +W++++SG A + +AL F++M G
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFV 149
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGL 195
++ +F +++SACS +++G+ V+ ++ ++ + V VDMY + G
Sbjct: 150 LNEYSFASVLSACSGLNDMNKGV-------QVHSLIAKSPFLSDVYIGSALVDMYSKCGN 202
Query: 196 LEEAEAFIREM 206
+ +A+ EM
Sbjct: 203 VNDAQRVFDEM 213
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 179/293 (61%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+++SW MI Y + G E + ++ M K+ P+E TL VLS L+
Sbjct: 301 MPERNIISWNAMISCYVQGGRFPETLGLYNRM-KSLGLTPDEVTLAGVLSVHGQNGDLAS 359
Query: 61 GQYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI + D V+ L N++I+MY +CG V +I +F + K+ ISW+ +I L
Sbjct: 360 GRMIHCYIQDSFSDPGVTVL--NSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGAL 417
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G ++A+ F M+ + PD++TF+ L+SACSHGGL++ G FKAM +Y + P+
Sbjct: 418 AMHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPE 477
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR G L +A I++MP++ + VWGAL+ ACRIH + E+ ++L+
Sbjct: 478 VEHYACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLL 537
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+G++ G F L+SN +WED ++R +R G KK G S IE+N SI
Sbjct: 538 ELEGINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSI 590
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 128/258 (49%), Gaps = 41/258 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P R+VVSW TMIGG A+ G EA ++F+EM + + + T V++L CS L G
Sbjct: 170 PHRNVVSWNTMIGGCAQAGETSEACALFREMRR-QGVLADVFTFVSLLLVCSKEGNLEVG 228
Query: 62 QYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ VH ++ +R DL ++GNA+++MY KCGD+ +A + F+++ K+++SW++++
Sbjct: 229 RLVHCHMLASGSRVDL----ILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCA 284
Query: 119 LAMNGC-----------------------------GR--QALQLFSLMIINGVFPDDVTF 147
LA +G GR + L L++ M G+ PD+VT
Sbjct: 285 LAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTL 344
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++S G + G ++ + + P ++DMY R G ++ + + EMP
Sbjct: 345 AGVLSVHGQNGDLASGRMIHCYIQDSFSD-PGVTVLNSLIDMYARCGQVDTSISLFTEMP 403
Query: 208 IEAEWSVWGALLNACRIH 225
+ S W ++ A +H
Sbjct: 404 NKNTIS-WNVIIGALAMH 420
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 5/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D ++ ++I Y+ G +EA+ + +++ + + PNE TL VL ACS A
Sbjct: 67 VPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLR-RGILPNEFTLPFVLKACSRARAAEH 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
H ++ + VGNA+++ G + + ++F M +++++SW+T+I G
Sbjct: 126 ALATHG-VAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSWNTMIGGC 184
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A G +A LF M GV D TF++L+ CS G ++ G ++ M V
Sbjct: 185 AQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGSRVDL 244
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A +VDMYG+ G L A MPI+ S W ++L A H
Sbjct: 245 ILGNA-LVDMYGKCGDLWMAHRCFDVMPIKNVVS-WTSMLCALAKH 288
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 82/187 (43%), Gaps = 9/187 (4%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN---MYVKCGDVGI- 96
N ++ +L C SI L +H+++ +V+++V V + + + GDV +
Sbjct: 2 NPCHVLELLQQCRSIRHL---DQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALC 58
Query: 97 -AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F+ + D +++++I + +GC ++AL L ++ G+ P++ T ++ ACS
Sbjct: 59 HARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACS 118
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+ L ++ V Q ++ AG L ++ EM W
Sbjct: 119 RARAAEHALAT-HGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMAPHRNVVSW 177
Query: 216 GALLNAC 222
++ C
Sbjct: 178 NTMIGGC 184
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +SW++M+ GY G +EA+ +FQ+M++ +E P L +VL+ACS+I A+
Sbjct: 254 MSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETRPGRFILSSVLAACSNIGAIDQ 312
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+Y+ R + + ++G A+++MY KCG + + +VF + +++ +W+ +I GLA
Sbjct: 313 GRWVHAYLK-RNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLA 371
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G AL+LFS + + P+ +T + +++AC+H G VD+GL +F+ M Y + P+
Sbjct: 372 IHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPEL 431
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+GL EAE I MP++ +VWGALL ACRIH N ++ + + + L+
Sbjct: 432 EHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLE 491
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A R++D +KIR ++ G+K G S +++N ++
Sbjct: 492 LEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTV 543
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 55/250 (22%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV W TMI GY + G E A +F +M
Sbjct: 196 DVVCWNTMIDGYLKCGVLEAAKGLFAQM-------------------------------- 223
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V N+ N +IN K G++G A ++F+ ++ +D ISWS+++ G G
Sbjct: 224 ----------PVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAG 273
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL---ILFKAMSTVYEIVPQT 180
++AL++F M P ++++ACS+ G +DQG K S + V T
Sbjct: 274 RYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGT 333
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
++DMY + G L+ EM E E W A++ IH E+F +++
Sbjct: 334 ----ALLDMYAKCGRLDMGWEVFEEMK-EREIFTWNAMIGGLAIHGRAEDALELFSKLQE 388
Query: 237 ELVNKKGVSV 246
+ G+++
Sbjct: 389 GRMKPNGITL 398
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 103/253 (40%), Gaps = 37/253 (14%)
Query: 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC--GDVGIAIQVFNMLAYKDMI 110
SI++L + +H + R + V A++ Y + A++VF+ + ++
Sbjct: 41 KSITSLQYLTQLHGLV-LRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVF 99
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGL 159
W+ VI G N +A+ + M+I+ P+ T+ L ACS HG +
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMVIDAR-PNKFTYPTLFKACSVAQAVQEGRQIHGHV 158
Query: 160 VDQGL------------------ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V G+ L A Y + ++D Y + G+LE A+
Sbjct: 159 VKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKG 218
Query: 202 FIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261
+MP++ S W ++N N + E+ + +S ++ M + + A R
Sbjct: 219 LFAQMPVKNIGS-WNVMINGLAKGGNLGDARKLFDEMSERDEIS---WSSMVDGYISAGR 274
Query: 262 WEDANKIRDEIRR 274
+++A +I +++R
Sbjct: 275 YKEALEIFQQMQR 287
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 185/294 (62%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW +MI Y G EA+ +F +M ++ P+EATLV++L+ACS + L
Sbjct: 214 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVM 272
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+YI S + V+ + N++I+MY KCG V A+ +F + K+++SW+ +I L
Sbjct: 273 GKKIHNYILSNKGAYGVT--LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGAL 330
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++GCG +A++LF M +G PD++T L+SACSH GLVD GL F M +Y + +
Sbjct: 331 ALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPRE 390
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR GLL EA I MP++ + VWGALL ACRIH N E+ I ++L+
Sbjct: 391 IEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLL 450
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ S G + L+SN + A RWED KIR + G+KK S IE++ I+
Sbjct: 451 ELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIY 504
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/293 (24%), Positives = 123/293 (41%), Gaps = 75/293 (25%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS------- 53
+P+ + + ++I GY+ +AV +F+ M PNE TL VL AC
Sbjct: 48 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRM-ICSGLSPNEFTLPFVLKACGCKSAYWE 106
Query: 54 -----------SISALSFGQ-----------YVHSYISTRYDLSVSNL----VGNAVINM 87
I +L F Q +H D++ L V NA+++M
Sbjct: 107 AVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDM 166
Query: 88 YVKCGD-------------------------------VGIAIQVFNMLAYKDMISWSTVI 116
Y KCG+ + +A Q+F+ + K+++SW+++I
Sbjct: 167 YAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMI 226
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
S G R+AL LF+ M + V PD+ T +++++ACS G L++ K + Y +
Sbjct: 227 SCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLG----DLVMGKKIHN-YIL 281
Query: 177 VPQTQH----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + Y ++DMY + G + A EMP + S W ++ A +H
Sbjct: 282 SNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVS-WNVIIGALALH 333
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 188/298 (63%), Gaps = 13/298 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SWTTMI Y++ EA++VF EM+ T +P+E T+ ++SAC+ + AL
Sbjct: 133 MPNRDIISWTTMIACYSQNKQFREALAVFNEMQ-TNGIDPDEVTMATIISACAHLGALDL 191
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y + +DL V +G+A+I+MY KCG + ++ VF L K++ W+++I GL
Sbjct: 192 GKEIHLYAMEMGFDLDV--YIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGL 249
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G +AL +FS M + P+ VTFI+++ AC+H GLV++G F +MS + I P+
Sbjct: 250 AVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPE 309
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ G+AGLLE+A +R M +E +WGALL C++HRN + I Q V
Sbjct: 310 IEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLK----IAQVAV 365
Query: 240 NKKGV----SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT-GCSWIEVNPSI 292
N+ V + G + L+ N +A +RW + IR ++ +G++K + G SWIE++ I
Sbjct: 366 NESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKI 423
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 112/250 (44%), Gaps = 49/250 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV +WTTMI +A G A +F EM A
Sbjct: 71 MSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTAS--------------------- 109
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
NA+I+ Y + +V A +F+ + +D+ISW+T+I+ +
Sbjct: 110 --------------------WNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYS 149
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
N R+AL +F+ M NG+ PD+VT +ISAC+H G +D G I AM +++
Sbjct: 150 QNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDL--D 207
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIR 235
+ ++DMY + G L+++ ++ + W +++ +H E MF ++
Sbjct: 208 VYIGSALIDMYAKCGSLDKSLVVFFKLR-KKNLFCWNSIIEGLAVHGYAEEALAMFSRMQ 266
Query: 236 QELVNKKGVS 245
+E + GV+
Sbjct: 267 REKIKPNGVT 276
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
+ P T +++ ACS +S L FG+ VH +I +Y V A+++ Y G +
Sbjct: 5 QVSPTSFTFSSLVKACSLVSELGFGEAVHGHI-WKYGFDSHVFVQTALVDFYGNAGKIVE 63
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A +VF+ ++ +D+ +W+T+IS A G A QLF M + + ++ A+I S
Sbjct: 64 ARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVR----NTASWNAMIDGYSR 119
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWS 213
V+ +LF M +I+ T AC Y + EA A EM I+ +
Sbjct: 120 LRNVESAELLFSQMPN-RDIISWTTMIAC----YSQNKQFREALAVFNEMQTNGIDPDEV 174
Query: 214 VWGALLNAC 222
+++AC
Sbjct: 175 TMATIISAC 183
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R V+SWT +I G+ + G EEA+ F++M+ +K EP+ T+V VLSAC+++ AL
Sbjct: 105 MPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSK-VEPDRVTIVTVLSACANLGALGL 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y + + L + + N++I++Y +CG + +A QVF + + ++SW+++I GLA
Sbjct: 164 GLWVHRY-ALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLA 222
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL+ F LM G P+DV+F ++ACSH GLVD+GL F M V++I P+
Sbjct: 223 ANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRI 282
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+Y RAG LE+A + ++ MP++ V G+LL ACR + E+ + + LV+
Sbjct: 283 EHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVH 342
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A RW+ A K R ++ +G++KK G S IE+ I
Sbjct: 343 LDPGADSNYVLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDI 394
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 48/285 (16%)
Query: 37 EAEPNEATLVNVLSACSSISAL--SFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGD 93
E +PN T + +LS C+ + + S G +H+Y + + L NL VG A+++MY KCG
Sbjct: 5 EIDPNHVTFITLLSGCADLPSQGNSLGPLLHAY-TRKLGLDTCNLMVGTALVDMYAKCGH 63
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM----------IING---- 139
V ++ F+ L K+ SW+T+I G NG R+A+++F M +ING
Sbjct: 64 VELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKM 123
Query: 140 -----------------VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
V PD VT + ++SAC++ G + GL + + + + +
Sbjct: 124 GLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHR-YALKKGLRDNVKI 182
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEA--EW-SVWGALLNACRIHRNDEMFDPIRQELV 239
++D+Y R G +E A +M W S+ G L E FD ++++
Sbjct: 183 CNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGF 242
Query: 240 NKKGVSVGTFALMSNTFAGA--------DRWEDANKIRDEIRRMG 276
VS T AL + + G D E +KI I G
Sbjct: 243 KPNDVSF-TGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYG 286
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW M+ Y++ G EE + +F EM + E N + VLS C+ I+AL
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV-NRSAFACVLSTCADIAALEC 401
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + R V VGNA++ MY KCG++ A F + +D++SW+T+I+G A
Sbjct: 402 GMQLHGRL-IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL++F +M PDD+T + +++ACSH GLV++G+ F +M + + +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA +++MP E + ++WGALL A RIHRN E+ +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + +W DA K+R + G+KK G SWIEV +
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKV 632
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 47/274 (17%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT ++ GYA+ G EEA VF M + +A+S+
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--------------------NAVSWN 290
Query: 62 QYVHSYISTRYDLSVSNLVG----------NAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
V +YI R L N ++ Y + G + A VF+ + KD +S
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +++ + GC + LQLF M G + + F ++S C+ ++ G+ L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG--- 407
Query: 172 TVYEIVPQTQHYACVVD-----MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH- 225
++ C V MY + G +E+A EM E + W ++ H
Sbjct: 408 ---RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463
Query: 226 ---RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
E+FD +R ++ VG A S++
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 43/308 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP+R ++ M+ GY+ G A S+F+ + + N TL++ L+ SS++ A
Sbjct: 64 MPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYN--TLLHALAVSSSLADARG 121
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINM----------------------YVKCGDVGIA 97
+ S Y++ +S+ + ++++ YV+ G V A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+FN D+ISW+ ++SG G +A +LF M V V++ ++S +
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARR 237
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G + + LF A + V ++ T VV Y + G+LEEA MP E W A
Sbjct: 238 GDMVEARRLFDA-APVRDVFTWT----AVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNA 291
Query: 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ A I R M D ++ +V ++ M +A A E+A + D +
Sbjct: 292 MV-AAYIQR--RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT-----M 343
Query: 278 KKKTGCSW 285
+K SW
Sbjct: 344 PQKDAVSW 351
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 175/293 (59%), Gaps = 1/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV++ M+GGY + G+C EA+ +F M+ + ATL+ LSA + + +
Sbjct: 315 MPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDK 374
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H +I S+ +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 375 GVAIHRFIE-EIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLA 433
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A M V PDD+TFI L++AC H GLV +G++ F+ M V+++ P+
Sbjct: 434 IHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKL 493
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG +EEA+ F+ EMP E +W +LL+AC+ H + + P+ + L+
Sbjct: 494 QHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMR 553
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
S ++ L SN +AG +W D K+R +++ LKK GCSWIE+ ++
Sbjct: 554 LDSPSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVY 606
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 38/263 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE------------AEPNEATLV-- 46
MPKRD VS+ +MI GY + G + A VF + + A+ + LV
Sbjct: 188 MPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAW 247
Query: 47 ---------------NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
+++ C + Q + + R +S +N+ I+ Y K
Sbjct: 248 QLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANM-----IDGYAKN 302
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIAL 150
G V IA +F+ + +D+++++ ++ G NG +AL +F M +G F D+ T +
Sbjct: 303 GRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIA 362
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SA + G +D+G+ + + + + + A ++DMY + G +E A + E E
Sbjct: 363 LSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVA-LIDMYSKCGSIENA-MMVFENIKEK 420
Query: 211 EWSVWGALLNACRIHRNDEM-FD 232
W A++ IH E+ FD
Sbjct: 421 SVDHWNAIIGGLAIHGLGELAFD 443
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 99/233 (42%), Gaps = 45/233 (19%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I Y+ +EA+ + M + A ++ TL VL ACS + + G +H +
Sbjct: 95 WNAIIKTYSHGHDPKEAMWLVSLMLENG-AFADKFTLSLVLKACSRVGLVKEGMQIHGLL 153
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-------------------- 108
+ + + N +I+ YVKCG + A QVF+ + +D
Sbjct: 154 K-KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLA 212
Query: 109 -------------MISWSTVISGLAMNGCG-RQALQLFSLMIINGVFPDDVTFIALISAC 154
+ISW+++I G A + G A QLF+ M D +++ ++I C
Sbjct: 213 RVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPER----DLISWNSMIDGC 268
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
G ++ LF M +IV +A ++D Y + G ++ A + EMP
Sbjct: 269 VKCGRMEDAQGLFDRMPN-RDIVS----WANMIDGYAKNGRVDIARSLFDEMP 316
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 177/289 (61%), Gaps = 1/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQ 62
++VV+WT MIGGYA+ G +A+ +F ++ K K + +PN TL L AC+ + L G+
Sbjct: 443 KNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+Y + S VGN +I+MY K GD+ A VF+ + ++++SW+++++G M+
Sbjct: 503 QLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMH 562
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL LF M G D +TF+ ++ ACSH G+VDQG+I F M + I P +H
Sbjct: 563 GRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEH 622
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GRAG L EA I+ M +E VW ALL+A RIH N E+ + +L
Sbjct: 623 YACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELG 682
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ G++ L+SN +A A RW+D +IR ++ G++K+ GCSWI+ S
Sbjct: 683 AENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKS 731
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 131/249 (52%), Gaps = 18/249 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DV++W+ +I GYA++G EA+ VF++M+ EPN TL ++LS C+S+ AL +G+
Sbjct: 332 KLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLEPNVVTLASLLSGCASVGALLYGK 390
Query: 63 YVHSYISTRY------DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWST 114
H+Y+ D LV N +I+MY KC +A +F+ + KD +++W+
Sbjct: 391 QTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTV 450
Query: 115 VISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
+I G A +G AL+LF+ + + P+ T + AC+ G + G L A +
Sbjct: 451 MIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQL-HAYAL 509
Query: 173 VYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDE- 229
E + + C++DMY ++G ++ A A M + S W +L+ +H R +E
Sbjct: 510 RNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS-WTSLMTGYGMHGRGEEA 568
Query: 230 --MFDPIRQ 236
+FD +++
Sbjct: 569 LHLFDQMQK 577
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 142/293 (48%), Gaps = 27/293 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
D+VSW +++ Y + G A+ + M + + P+ TLVN+L AC+S+ AL G+
Sbjct: 195 DIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGK 254
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH + S R L VGNA+++MY KC + A +VF + KD++SW+ +++G +
Sbjct: 255 QVHGF-SVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G AL LF +M + D +T+ A+I+ + G + L +F+ M +Y + P
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQ-LYGLEPNVVT 372
Query: 183 YACVVDMYGRAGLL---EEAEAFIREMPIEAEWS-------VWGALLN---ACRIHR-ND 228
A ++ G L ++ A++ + + W+ V L++ C+ +R
Sbjct: 373 LASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVAR 432
Query: 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+FD I K +V T+ +M +A DA K+ +I K+KT
Sbjct: 433 SIFDSIE-----GKDKNVVTWTVMIGGYAQHGEANDALKLFAQI----FKQKT 476
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I + G ++ + + +M++ P+ T VL AC I +L G VH+ +
Sbjct: 95 WNALIRRSVKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRHGASVHAIV 153
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG 125
L + + N+++ MY +CG + A Q+F+ + + D++SW+++++ G
Sbjct: 154 CAN-GLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQS 212
Query: 126 RQALQL-------FSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLI 165
R AL++ +SL + PD +T + ++ AC+ HG V GL+
Sbjct: 213 RTALRIAFRMGNHYSLKL----RPDAITLVNILPACASVFALQHGKQVHGFSVRNGLV 266
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSWT+++ GY G EEA+ +F +M+K A + T + VL ACS +
Sbjct: 544 MKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFA-VDGITFLVVLYACSHSGMVDQ 602
Query: 61 GQ-YVHSYI 68
G Y H +
Sbjct: 603 GMIYFHDMV 611
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/295 (40%), Positives = 183/295 (62%), Gaps = 7/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK------EAEPNEATLVNVLSACSS 54
M +DVV W MI GYA+ G EA+ F++M + PNE T+V VLS+C
Sbjct: 209 MGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQ 268
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
+ AL G++VHSY+ + V+ VG A+++MY KCG + A +VF+++ KD+++W++
Sbjct: 269 VGALECGKWVHSYVENN-GIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNS 327
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G ++G +ALQLF M GV P D+TF+A+++AC+H GLV +G +F +M Y
Sbjct: 328 MIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGY 387
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P+ +HY C+V++ GRAG ++EA +R M +E + +WG LL ACRIH N + + I
Sbjct: 388 GMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEI 447
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ LV+ S GT+ L+SN +A A W K+R ++ G++K+ GCS IEV
Sbjct: 448 AEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVK 502
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 51/240 (21%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V WT +I +A A+S + +M T +PN TL ++L AC+ L
Sbjct: 82 PNPNVFLWTHIINAHAHFDLFHHALSYYSQM-LTHPIQPNAFTLSSLLKACT----LHPA 136
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN------MLAY--------- 106
+ VHS+ + ++ LS V +++ Y + GDV A ++F+ +++Y
Sbjct: 137 RAVHSH-AIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAK 195
Query: 107 ----------------KDMISWSTVISGLAMNGCGRQALQLF-------SLMIINGVFPD 143
KD++ W+ +I G A +GC +AL F V P+
Sbjct: 196 HGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPN 255
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLEEAE 200
++T +A++S+C G ++ G K + + E I + +VDMY + G LE+A
Sbjct: 256 EITVVAVLSSCGQVGALECG----KWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDAR 311
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 181/288 (62%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
PK R VV+WT +IGG A+ G EA+ +F +M + PN T+ L AC+ + AL
Sbjct: 437 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 496
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ +H+Y+ S V N +I+MY K GDV A VF+ + ++ +SW+++++G
Sbjct: 497 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGY 556
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +ALQ+F M G+ PD VTF+ ++ ACSH G+VDQG+ F M+ + +VP
Sbjct: 557 GMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPG 616
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ RAG L+EA IR MP++ +VW ALL+ACR++ N E+ + +L+
Sbjct: 617 AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLL 676
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G++ L+SN +A A W+D +IR ++ G+KK+ GCSW++
Sbjct: 677 ELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 724
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 95/194 (48%), Gaps = 36/194 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSW +++ Y + G A+ +F+ M + P+ +LVNVL AC+S+ A S G+ V
Sbjct: 194 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 253
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------------- 111
H Y + R L VGNAV++MY KCG + A +VF + KD++S
Sbjct: 254 HGY-ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 312
Query: 112 ----------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
WS VI+G A G G +AL +F M + G P+ VT ++
Sbjct: 313 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVS 372
Query: 150 LISACSHGGLVDQG 163
L+S C+ G + G
Sbjct: 373 LLSGCALAGTLLHG 386
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 123/241 (51%), Gaps = 24/241 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VV+W+ +I GYA+RG EA+ VF++M + +EPN TLV++LS C+ L G+
Sbjct: 331 NVVTWSAVIAGYAQRGLGFEALDVFRQM-RLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389
Query: 65 HSYISTRYDLSVSN-------LVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTV 115
H + + ++ L++ +V NA+I+MY KC A +F+++ KD +++W+ +
Sbjct: 390 HCH-AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 448
Query: 116 ISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQG-----LILFK 168
I G A +G +AL+LFS M+ N V P+ T + AC+ G + G +L
Sbjct: 449 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 508
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
+ V C++DMY ++G ++ A M S W +L+ +H
Sbjct: 509 RFESAMLFVAN-----CLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHGRG 562
Query: 229 E 229
E
Sbjct: 563 E 563
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 127/245 (51%), Gaps = 18/245 (7%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V W +I GF E+ + +++ M++ P+ T VL AC I + G VH
Sbjct: 91 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVH 149
Query: 66 SYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAM 121
+ + ++ ++ +V VGN +++MY +CG A QVF+ + + D++SW+++++
Sbjct: 150 AVVFASGFEWNV--FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQ 207
Query: 122 NGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 178
G +A+++F M + G+ PD V+ + ++ AC+ G +G + + S ++E V
Sbjct: 208 GGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVF 267
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDE---MFDPI 234
VVDMY + G++EEA M ++ S W A++ +I R D+ +F+ I
Sbjct: 268 VGN---AVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKI 323
Query: 235 RQELV 239
R+E +
Sbjct: 324 REEKI 328
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
M +R+ VSWT+++ GY G EEA+ +F EM+K P+ T V VL ACS
Sbjct: 541 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLV-PDGVTFVVVLYACS 592
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 189/290 (65%), Gaps = 3/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV+WT MI GY + GF ++A+ +F+ M K + +PN TL +LS SS+++L G+
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIK-EGPKPNNYTLATMLSVSSSLASLDHGRQ 433
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMN 122
+H+ +TR + S V NA+I MY K G + A VFN++ +K D I+W+++I LA +
Sbjct: 434 IHAS-ATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH 492
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL LF M+ NG+ PD +T++ ++SAC+H GLV+QG + M ++I+P H
Sbjct: 493 GLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSH 552
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC++D++GRAGLL+EA AFI MPIE + WG+LL +C++H+N E+ + + L+ +
Sbjct: 553 YACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIE 612
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G ++ ++N ++ +WE+A IR ++ G+KK G SW+++ +
Sbjct: 613 PENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKV 662
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 122/258 (47%), Gaps = 35/258 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW MI GY + GF EA+ +F +M ++P++ TL + LSAC+++ L
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ +H++I R + VGNA+I+M
Sbjct: 297 GKQIHAHI-IRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDG 355
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A ++F+ L +D+++W+ +I G NG + A++LF MI G P++ T
Sbjct: 356 YVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTL 415
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++S S +D G + A +T ++ MY ++G + +A +
Sbjct: 416 ATMLSVSSSLASLDHGRQI-HASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIH 474
Query: 208 IEAEWSVWGALLNACRIH 225
+ + W +++ A H
Sbjct: 475 WKRDTITWTSMIIALAQH 492
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 117/248 (47%), Gaps = 57/248 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D VSWT MI GY + G E A+ +F+EM + + P + TL NVL++C+++ L
Sbjct: 105 MPEPDSVSWTAMIVGYNQMGQFENAIGMFREM-VSDDVPPTQFTLTNVLASCAAVECLGI 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------- 107
G+ VHS++ ++ LS V N+++NMY K GD A VF+ + K
Sbjct: 164 GRKVHSFV-VKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHM 222
Query: 108 ------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFI 148
D++SW+ +ISG +G R+AL +FS M+++ PD T
Sbjct: 223 QSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLA 282
Query: 149 ALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197
+ +SAC+ H ++ F A+ ++ MY ++G +E
Sbjct: 283 SALSACANLENLKLGKQIHAHIIRTEFDTFGAVGN------------ALISMYSKSGGVE 330
Query: 198 EAEAFIRE 205
A+ I +
Sbjct: 331 IAQKIIEQ 338
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
KRD ++WT+MI A+ G EEA+++F+ M + +P+ T V VLSAC+ + + G+
Sbjct: 476 KRDTITWTSMIIALAQHGLGEEALTLFERMLENG-IKPDHITYVGVLSACTHVGLVEQGR 534
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVIS 117
++ + + + + +I+++ + G + A + NM D+I+W ++++
Sbjct: 535 SYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLA 590
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + L + + N ++N Y K G + A +VF+ + K + SW+ ++SG A
Sbjct: 32 GKSIHARI-IKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYA 90
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A ++F M PD V++ A+I + G + + +F+ M V + VP T
Sbjct: 91 KGGRLEEAHRVFEEM----PEPDSVSWTAMIVGYNQMGQFENAIGMFREM--VSDDVPPT 144
Query: 181 QHYACVVDMYGRA----GLLEEAEAFIREMPIEAEWSVWGALLN 220
Q V A G+ + +F+ + + + SV +LLN
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLN 188
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 24/151 (15%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ Y K G + A +VF + D +SW+ +I G G A+ +F M+ + V
Sbjct: 83 NIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP 142
Query: 142 PDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMY 190
P T ++++C+ H +V GL + +++ +++MY
Sbjct: 143 PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVAN------------SLLNMY 190
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++G A+ M +++ S W ++++
Sbjct: 191 AKSGDPVTAKIVFDRMKLKST-SSWNTMISS 220
>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
Length = 1097
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/293 (42%), Positives = 184/293 (62%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V +WT MIGG A+ G +A S F +M + + P+ T V++LSAC+S AL +
Sbjct: 685 MVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLR-EGIVPDATTYVSILSACASTGALEW 743
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH++ + VS+L VGNA+++MY KCG + A VF+ + +D+ SW+ +I GL
Sbjct: 744 VKEVHNHAVSAG--LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGL 801
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL F M G P+ +++A+++ACSH GLVD+G F +M+ Y I P
Sbjct: 802 AQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPT 861
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLLEEAE FI MPIE + + WGALL AC + N EM + +E +
Sbjct: 862 MEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERL 921
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K S T+ L+SN +A +WE +R ++R G++K+ G SWIEV+ I
Sbjct: 922 KLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRI 974
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 26/238 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL--SACSSISAL 58
M +RD+ SWT MIGG A+ G +EA S+F +M++ PN T +++L SA +S SAL
Sbjct: 381 MTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG-CLPNLTTYLSILNASAIASTSAL 439
Query: 59 SFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ + VH + +S+L +GNA+I+MY KCG + A VF+ + +D+ISW+ ++
Sbjct: 440 EWVKVVHKHAEEAG--FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMG 497
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLA NGCG +A +F M G+ PD T+++L++ +HG A+ V E+
Sbjct: 498 GLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN--THGST--------DALEWVNEVH 547
Query: 178 PQTQHYACVVD---------MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
+ D MY R G +++A ++ + + W A++ R
Sbjct: 548 KHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQQR 604
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 8/231 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R V +W MIGG A++ EA+S+F +M++ + P+ T +N+LSA AL + +
Sbjct: 588 RHVTTWNAMIGGAAQQRCGREALSLFLQMQR-EGFIPDATTFINILSANVDEEALEWVKE 646
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS+ + D + +L VGNA+++ Y KCG+V A QVF+ + +++ +W+ +I GLA +
Sbjct: 647 VHSHAT---DAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQH 703
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GCG A F M+ G+ PD T+++++SAC+ G ++ + + +V +
Sbjct: 704 GCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEW-VKEVHNHAVSAGLVSDLRV 762
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+V MY + G +++A + +M +E + W ++ H R E D
Sbjct: 763 GNALVHMYAKCGSIDDARSVFDDM-VERDVFSWTVMIGGLAQHGRGLEALD 812
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 23/244 (9%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+++ WTTMIGGYAE G E+A+ V+ +M + + +PNE T +++L AC L +G+
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKM-RQECGQPNEITYLSILKACCCPVNLKWGK 239
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H++I + V A++NMYVKCG + A +F+ + +++ISW+ +I GLA
Sbjct: 240 KIHAHI-IQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHY 298
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G++A LF M G P+ T++++++A + G A+ V E+ +
Sbjct: 299 GRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAG----------ALEWVKEVHSHAVN 348
Query: 183 YACVVD---------MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
+D MY ++G +++A M E + W ++ H R E F
Sbjct: 349 AGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT-ERDIFSWTVMIGGLAQHGRGQEAFS 407
Query: 233 PIRQ 236
Q
Sbjct: 408 LFLQ 411
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 144/295 (48%), Gaps = 37/295 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V+SWT MIGG A G +EA +F +M++ + PN T V++L+A +S AL +
Sbjct: 280 MVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQR-EGFIPNSYTYVSILNANASAGALEW 338
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHS+ + L++ VGNA+++MY K G + A VF+ + +D+ SW+ +I GLA
Sbjct: 339 VKEVHSH-AVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLA 397
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++A LF M NG P+ T++++++A + A ++ E V
Sbjct: 398 QHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA------------IASTSALEWVKVV 445
Query: 181 QHYA-------------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL-----NAC 222
+A ++ MY + G +++A M + + W A++ N C
Sbjct: 446 HKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGM-CDRDVISWNAMMGGLAQNGC 504
Query: 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
H +F ++QE + T+ + NT D E N++ GL
Sbjct: 505 G-HEAFTVFLQMQQEGLVPDST---TYLSLLNTHGSTDALEWVNEVHKHAVETGL 555
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+SW M+GG A+ G EA +VF +M++ + P+ T +++L+ S AL +
Sbjct: 484 MCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQ-EGLVPDSTTYLSLLNTHGSTDALEW 542
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH + + L VG+A I+MY++CG + A +F+ L+ + + +W+ +I G A
Sbjct: 543 VNEVHKH-AVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAA 601
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
CGR+AL LF M G PD TFI ++SA
Sbjct: 602 QQRCGREALSLFLQMQREGFIPDATTFINILSA 634
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+ VN+L C + + VH I + + + V N ++ +Y++CG + A QVF+
Sbjct: 120 SYVNILQRCLKQEDILLAKQVHVCI-IKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDK 178
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-------- 155
L K++ W+T+I G A G A++++ M P+++T+++++ AC
Sbjct: 179 LLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWG 238
Query: 156 ---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H ++ G F++ ++ +T +V+MY + G +E+A+ +M +E
Sbjct: 239 KKIHAHIIQSG---FQS-----DVRVET----ALVNMYVKCGSIEDAQLIFDKM-VERNV 285
Query: 213 SVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMS----NTFAGADRW 262
W ++ R E F Q + ++G ++ +S N AGA W
Sbjct: 286 ISWTVMIGGLAHYGRGQEAFHLFLQ--MQREGFIPNSYTYVSILNANASAGALEW 338
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+ MI GYA++ E + +FQEM+ + +P+E LV+V+SAC+ ++AL
Sbjct: 381 MPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ-IEGTKPDETILVSVISACTHLAALDQ 439
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+YI + L ++ ++G +INMY+K G V A++VF L K + +W+ +I GLA
Sbjct: 440 GKWIHAYIR-KNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLA 498
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG ++L+ FS M +GV P+++TF+A++ AC H GLVD+G F +M ++I P
Sbjct: 499 MNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNI 558
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG+L+EAE I MP+ + S WGALL AC+ + ++E + I ++LV
Sbjct: 559 KHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVE 618
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G L+SN +A W D ++R +R+ G+ K GCS IE +
Sbjct: 619 LHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAH 667
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 39/252 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+VSW+ +I Y + EEA+ +F+EM +E +++VLSACS + +
Sbjct: 249 MKQKDLVSWSALISCYEQNEMYEEALILFKEM-NANGIMVDEVVVLSVLSACSRLLVVIT 307
Query: 61 GQYVH---------SYISTRYDL---------------------SVSNLVGNAVINMYVK 90
G+ VH +Y++ + L + + N++I+ YVK
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG++ A +F+ + KD +SWS +ISG A + L LF M I G PD+ +++
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427
Query: 151 ISACSHGGLVDQGLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
ISAC+H +DQG + + I+ T +++MY + G +E+A + +
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTT----LINMYMKLGCVEDALEVFKGLE 483
Query: 208 IEAEWSVWGALL 219
E S W AL+
Sbjct: 484 -EKGVSTWNALI 494
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 72/247 (29%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSW +M+ GY G EEA V+ M + NV+++
Sbjct: 191 DMVSWNSMLAGYVLVGNVEEAKDVYDRMPER-----------NVIAS------------- 226
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
N++I ++ K G+V A ++FN + KD++SWS +IS N
Sbjct: 227 -----------------NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEM 269
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL--------I 165
+AL LF M NG+ D+V ++++SACS HG +V G+
Sbjct: 270 YEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNA 329
Query: 166 LFKAMSTVYEIVPQTQHY--ACVVDM---------YGRAGLLEEAEAFIREMPIEAEWSV 214
L S+ E+V + + +C +D Y + G +E+A A MP + S
Sbjct: 330 LIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS- 388
Query: 215 WGALLNA 221
W A+++
Sbjct: 389 WSAMISG 395
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 13/198 (6%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI- 68
TM+ GY +R +A+ V++ M ++ A N T + +CS A G+ + ++
Sbjct: 95 NTMMKGYMQRNSPCKAIWVYKFMLESNVAADN-YTYPILFQSCSIRLAEFDGKCIQDHVL 153
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+D V + N +INMY CG++ A +VF+ + DM+SW+++++G + G +A
Sbjct: 154 KVGFDSDV--YIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEA 211
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
++ M V + ++I G V++ LF M ++ ++
Sbjct: 212 KDVYDRMPERNVIASN----SMIVLFGKKGNVEEACKLFNEMKQ-----KDLVSWSALIS 262
Query: 189 MYGRAGLLEEAEAFIREM 206
Y + + EEA +EM
Sbjct: 263 CYEQNEMYEEALILFKEM 280
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 189/290 (65%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +V+W +MI GY + G EAV VF +M +++ EP+ AT V+VLSACS + +L F
Sbjct: 169 MPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESR-VEPDSATFVSVLSACSQLGSLDF 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H I ++++ ++ +++NM+ +CGDVG A VF + +++ W+ +ISG
Sbjct: 228 GCWLHDCIVGS-GITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYG 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+++F M GV P+ VTF+A++SAC+H GL+D+G +F +M Y +VP
Sbjct: 287 MHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGV 346
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VDM+GR GLL EA F++ + E +VW A+L AC++H+N ++ + + L+
Sbjct: 347 EHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLI 406
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + + G + L+SN +A A R + +R+ + + GLKK+ G S I+V+
Sbjct: 407 NAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVD 456
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 10/224 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + ++I ++ GF +AV ++ M ++ P+ T +V+ AC+ +S L G V
Sbjct: 72 DSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIV-PSTYTFTSVIKACADLSLLCIGTLV 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS++ + + V A+I Y K +A +VF+ + + +++W+++ISG NG
Sbjct: 131 HSHVFVS-GYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGL 189
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEIVPQTQ 181
+A+++F+ M + V PD TF++++SACS G +D G L + +V T
Sbjct: 190 ANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATS 249
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V+M+ R G + A A M IE +W A+++ +H
Sbjct: 250 ----LVNMFSRCGDVGRARAVFYSM-IEGNVVLWTAMISGYGMH 288
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 177/293 (60%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 59
+P +DV+SW T+I GYA+ GF EA+ ++ ME+ E N+ T V+VL ACS AL
Sbjct: 410 LPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALR 469
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H + + L + VG ++ +MY KCG + A+ +F + + + W+T+I+
Sbjct: 470 QGMKLHGRL-LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACH 528
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G G +A+ LF M+ GV PD +TF+ L+SACSH GLVD+G F+ M T Y I P
Sbjct: 529 GFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPS 588
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+YGRAG LE A FI+ MP++ + S+WGALL+ACR+H N ++ + L
Sbjct: 589 LKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLF 648
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ VG L+SN +A A +WE ++IR GL+K G S +EV+ +
Sbjct: 649 EVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKV 701
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 126/246 (51%), Gaps = 11/246 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW ++I Y A+ +FQEM ++ +P+ TL+++ S S + +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSR-IQPDCLTLISLASILSQLGEIRA 366
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + + +GNAV+ MY K G V A VFN L KD+ISW+T+ISG A
Sbjct: 367 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYA 426
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYE 175
NG +A++++++M G + + T+++++ ACS G + QG+ L + +
Sbjct: 427 QNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD 486
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ T + DMYG+ G L++A + ++P W L+ H + E +
Sbjct: 487 VFVGTS----LADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLF 541
Query: 236 QELVNK 241
+E++++
Sbjct: 542 KEMLDE 547
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI GY + G +EA+++ + + T+V++LSAC+ +
Sbjct: 211 MPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM-----DSVTVVSLLSACTEAGDFNR 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY S ++ L V N +I++Y + G + +VF+ + +D+ISW+++I
Sbjct: 266 GVTIHSY-SIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+N +A+ LF M ++ + PD +T I+L S S G + QG L K
Sbjct: 325 LNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW----- 379
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ VV MY + GL++ A A +P
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 116/237 (48%), Gaps = 17/237 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV +W MI GY G+ E + F + +P+ T +VL AC +++ G
Sbjct: 115 RDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNK 171
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ ++ V ++I++Y + G V A +F+ + +DM SW+ +ISG +G
Sbjct: 172 IHC-LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSG 230
Query: 124 CGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
++AL L +G+ D VT ++L+SAC+ G ++G+ + + S + + +
Sbjct: 231 NAKEALTL-----SDGLRAMDSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESELFV 284
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
++D+Y G L++ + M + S W +++ A ++ P+R L+
Sbjct: 285 SNKLIDLYAEFGSLKDCQKVFDRMYVRDLIS-WNSIIKAYELNEQ-----PLRAILL 335
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 74 LSVSNLVGNA-----VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
L VSN + N ++N+Y G+V +A F+ + +D+ +W+ +ISG G +
Sbjct: 77 LVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEV 136
Query: 129 LQLFSL-MIINGVFPDDVTFIALISAC---SHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++ FSL M+ +G+ PD TF +++ AC + G + + F M VY A
Sbjct: 137 IRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDVYVA-------A 189
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +Y R G + A EMP + W A+++
Sbjct: 190 SLIHLYCRYGAVVNARILFDEMPTR-DMGSWNAMISG 225
>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Cucumis sativus]
Length = 563
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 188/303 (62%), Gaps = 11/303 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--------EKTKEAEPNEATLVNVLSAC 52
MP+RDV +W +I G A+ GF EA+ +F+ M +E +PN+ TL + LSAC
Sbjct: 236 MPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGSALSAC 295
Query: 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW 112
L G+++H Y+ Y + + NA+++MY KCG++ +A +VF+M+ K++ SW
Sbjct: 296 GHTGMLHLGKWIHGYVFKTYP-GQDSFISNALLDMYGKCGNLKVARRVFDMITLKNLTSW 354
Query: 113 STVISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+++I+ LA++G A+ LF+ +I +GV P++VTF+ +++AC+HGGLV++G F+ M
Sbjct: 355 NSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSYFEMM 414
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
Y+I PQ +H+ C++D+ GRAG EEA +R M IE + VWG+LLNAC+IH ++
Sbjct: 415 RRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVRGMNIEPDEVVWGSLLNACKIHGRSDL 474
Query: 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNP 290
+ ++L+ + G +++N +A +W++ K+R ++ K GCSWIEV+
Sbjct: 475 AEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWDEVRKVRRLLKEKNAYKTPGCSWIEVDN 534
Query: 291 SIF 293
++
Sbjct: 535 QVY 537
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC------------ 52
+V +T MI YA + A +++ M + PN +VL +C
Sbjct: 106 NVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLGSNATKMV 165
Query: 53 -SSISALSFGQY-------VHSYISTRYDLSVSNLVGN-----------AVINMYVKCGD 93
+ + FG Y V SY D+ + + + A+I+ Y + G+
Sbjct: 166 HTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLGN 225
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV---------FPDD 144
AI++F + +D+ +W+ +I+G A NG +A+ LF M++ + P+
Sbjct: 226 FDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNK 285
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAF 202
T + +SAC H G++ G + V++ P + ++DMYG+ G L+ A
Sbjct: 286 TTLGSALSACGHTGMLHLGKWIH---GYVFKTYPGQDSFISNALLDMYGKCGNLKVARR- 341
Query: 203 IREMPIEAEWSVWGALLNACRIH 225
+ +M + W +L+N +H
Sbjct: 342 VFDMITLKNLTSWNSLINCLALH 364
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 181/292 (61%), Gaps = 3/292 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VV WTT+I GYAE+G EA ++ +ME+ P++ L+++L+AC+ L G
Sbjct: 277 PVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAG-MRPDDGFLLSILAACAESGMLGLG 335
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGLA 120
+ +H+ + R+ V NA I+MY KCG + A VF+ M+A KD++SW+++I G A
Sbjct: 336 KRIHASMR-RWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFA 394
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +AL+LFS M+ G PD TF+ L+ AC+H GLV++G F +M VY IVPQ
Sbjct: 395 MHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQV 454
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GR G L+EA +R MP+E + G LLNACR+H + ++ + ++L
Sbjct: 455 EHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFK 514
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G ++L+SN +A A W + +R +++ G +K +G S IEV +
Sbjct: 515 LEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEV 566
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 11/229 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W +MIGG G + A +F EM N +L + +
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWN-----TMLDGYAKAGEMDT 237
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + R +S S +V Y K GD+ +A +F+ K+++ W+T+I+G A
Sbjct: 238 AFELFERMPWRNIVSWSTMVCG-----YSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYA 292
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+A +L+ M G+ PDD +++++AC+ G++ G + +M +
Sbjct: 293 EKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRR-WRFRCGA 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ +DMY + G L+ A M + + W +++ +H + E
Sbjct: 352 KVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGE 400
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 13/175 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEE-AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P +V + ++I +A + F +M+K P+ T +L ACS S+L
Sbjct: 79 VPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNG-LFPDNFTYPFLLKACSGPSSLP 137
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI--AIQVFNMLAYKDMISWSTVIS 117
+ +H+++ + V N++I+ Y +CG+ G+ A+ +F + +D+++W+++I
Sbjct: 138 LVRMIHAHVE-KIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIG 196
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAM 170
GL G + A +LF M PD V++ ++ + G +D LF+ M
Sbjct: 197 GLVRCGELQGACKLFDEM------PDRDMVSWNTMLDGYAKAGEMDTAFELFERM 245
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVVSW +MI G+A G E+A+ +F M + + EP+ T V +L AC+ ++
Sbjct: 378 MAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQ-EGFEPDTYTFVGLLCACTHAGLVNE 436
Query: 61 G-QYVHS 66
G +Y +S
Sbjct: 437 GRKYFYS 443
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C+++ +++ +H+ + + +L V +I + C + A+ VFN + + +
Sbjct: 28 LHKCTNLDSVN---QIHAQV-LKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPN 83
Query: 109 MISWSTVISGLAMNGCGRQ-ALQLFSLMIINGVFPDDVTFIALISACS 155
+ ++++I A N R F M NG+FPD+ T+ L+ ACS
Sbjct: 84 VHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACS 131
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 183/292 (62%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWTT+I YA+ +EAV F+ M E +PN L +LS C + +
Sbjct: 510 MLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE-KPNSPILTILLSVCGGLGSAKL 568
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ ++ ++ + +V NA+++MY KCG + +VF+ + +D+ +W+T I+G A
Sbjct: 569 GQQIHT-VAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCA 626
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++++ M GV P++VTF+ L++ACSH GLVD+G FK+MS Y + P
Sbjct: 627 QHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLL 686
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G ++ AE FI +MPIE + +W ALL AC+IH+N E+ ++L
Sbjct: 687 EHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFT 746
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN ++ W + ++R +++ G+ K+ GCSW+++ +
Sbjct: 747 TEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKV 798
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 35/190 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ +SW MI GYA+ G EEA+ + Q + + P+ ++L + ACS I AL
Sbjct: 378 MPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNG-MLPSLSSLTSSFLACSHIGALET 436
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD------------ 108
G+ VHS ++ + ++ V NA+I+MY KC ++ QVFN + KD
Sbjct: 437 GRQVHS-LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV 495
Query: 109 -------------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
++SW+T+IS A G +A++ F M+ P+
Sbjct: 496 QNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTI 555
Query: 150 LISACSHGGL 159
L+S C GGL
Sbjct: 556 LLSVC--GGL 563
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 113/234 (48%), Gaps = 14/234 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++V+WT MI GY + +F+ M + A P+++ +VLSA + + L
Sbjct: 183 MPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH-EGASPDQSNFASVLSAVTGLQDLGV 241
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVK-CGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ + + T ++ V ++G +++N+Y + + IAI+ F+ + ++ +WST+I+
Sbjct: 242 LEVLRPLVLKTGFESDV--VIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAA 299
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
L+ G A+ ++ + + P + ++ C G + + ILF+ + P
Sbjct: 300 LSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARC---GRITEARILFEQIPD-----P 350
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 232
+ ++ Y + G+++EA+ MP S G + + R++E D
Sbjct: 351 IVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALD 404
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 23/269 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--L 58
M +R+ +W+TMI + G + A++V+ ++ P++ L+ L+ C I+ +
Sbjct: 285 MVERNEYTWSTMIAALSHGGRIDAAIAVYGR--DPVKSIPSQTALLTGLARCGRITEARI 342
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
F Q + + NA+I Y++ G V A ++F+ + +++ ISW+ +I+G
Sbjct: 343 LFEQIPDPIVVS----------WNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAG 392
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NG +AL L + NG+ P + + ACSH G ++ G + S +
Sbjct: 393 YAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGR---QVHSLAVKAGC 449
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
Q Y C ++ MYG+ +E M ++ S W + + A + M + R
Sbjct: 450 QFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS-WNSFIAAL---VQNNMLEDARH 505
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDA 265
N V ++ + + +A A+R ++A
Sbjct: 506 IFDNMLSRDVVSWTTIISAYAQAERGDEA 534
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 43/196 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+++W +MI Y G E+A +F + + N T +LS + + +
Sbjct: 59 MPHRDIIAWNSMISAYCNSGMLEDARILFDAI-----SGGNVRTATILLSGYARLGRVLD 113
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-- 118
+ V + R + + NA+++ YV+ GD+ +A ++F+ + +D+ SW+++++G
Sbjct: 114 ARRVFDGMPER-----NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYC 168
Query: 119 ------------------------LAMNGCGR-----QALQLFSLMIINGVFPDDVTFIA 149
+ ++G R + +F +M G PD F +
Sbjct: 169 HSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFAS 228
Query: 150 LISACSHGGLVDQGLI 165
++SA + GL D G++
Sbjct: 229 VLSAVT--GLQDLGVL 242
>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Glycine max]
Length = 682
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 185/282 (65%), Gaps = 8/282 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW +MI GYA+ G +A+ +F+EM +K+++P+E T+V+V SAC + L
Sbjct: 357 MPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGL 416
Query: 61 GQYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + S + + LS+S N++I MY++CG + A F +A KD++S++T+ISGL
Sbjct: 417 GNWAVSILHENHIKLSISGY--NSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGL 474
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G ++++L S M +G+ PD +T+I +++ACSH GL+++G +F+++ VP
Sbjct: 475 AAHGHGTESIKLMSKMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIK-----VPD 529
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC++DM GR G LEEA I+ MP+E ++G+LLNA IH+ E+ + +L
Sbjct: 530 VDHYACMIDMLGRVGKLEEAVKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLF 589
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+ + G + L+SN +A A RW+D +K+RD++R+ G+KK T
Sbjct: 590 KVEPHNSGNYVLLSNIYALAGRWKDVDKVRDKMRKQGVKKTT 631
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 40/241 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R V SW M+ GYA+ G +E V +F +M + EP+E T V VLS+CSS+
Sbjct: 224 MPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGN-EPDETTWVTVLSSCSSLGDPCL 282
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC----------------------------- 91
+ + + R + + V A+++M+ KC
Sbjct: 283 AESIVRKLD-RMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAY 341
Query: 92 ---GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTF 147
GD+ +A +FN + ++ +SW+++I+G A NG +A+QLF MI + PD+VT
Sbjct: 342 ARVGDLSLARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTM 401
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++ SAC H G + G A+S ++E I Y ++ MY R G +E+A +E
Sbjct: 402 VSVFSACGHLGRLGLGNW---AVSILHENHIKLSISGYNSLIFMYLRCGSMEDARITFQE 458
Query: 206 M 206
M
Sbjct: 459 M 459
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 46/224 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R W +I GY + G +EA +F M E+E N T +++
Sbjct: 160 MPDRTAADWNVIISGYWKCGNEKEATRLFCMM---GESEKNVITWTTMVTG--------- 207
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ K ++ A F+ + + + SW+ ++SG A
Sbjct: 208 ---------------------------HAKMRNLETARMYFDEMPERRVASWNAMLSGYA 240
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG---LVDQGLILFKAMSTVYEIV 177
+G ++ ++LF M+ +G PD+ T++ ++S+CS G L + + M+
Sbjct: 241 QSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYF 300
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+T ++DM+ + G LE A+ ++ + W A+++A
Sbjct: 301 VKT----ALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISA 340
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAV-SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+V +T M+ Y++ G + V S+F+ M+ + +P + ++ SA G
Sbjct: 66 NVHVFTCMLKYYSQIGATTQVVVSLFKHMQYYNDIKPYTSFYPVLIK-----SAGKAGML 120
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y+ + S + V NA++ +Y K G + +A ++F+ + + W+ +ISG G
Sbjct: 121 LHAYL-LKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCG 179
Query: 124 CGRQALQLFSLM 135
++A +LF +M
Sbjct: 180 NEKEATRLFCMM 191
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW M+ Y++ G EE + +F EM + E N + VLS C+ I+AL
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALEC 401
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + R V VGNA++ MY KCG++ A F + +D++SW+T+I+G A
Sbjct: 402 GMQLHGRL-IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL++F +M PDD+T + +++ACSH GLV++G+ F +M + + +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA +++MP E + ++WGALL A RIHRN E+ +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + +W DA K+R + G+KK G SWIEV +
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKV 632
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP--NEATLVNVLSACSSISAL 58
MP RDVVSW M+ GYA RG EA +F +A P + T V+S + L
Sbjct: 219 MPGRDVVSWNIMVSGYARRGDMVEARRLF-------DAAPVRDVFTWTAVVSGYAQNGML 271
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ V + R +S NA++ Y++ + A ++FNM+ +++ SW+T+++G
Sbjct: 272 EEARRVFDAMPERNAVSW-----NAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTG 326
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G +A +F M D V++ A+++A S GG ++ L LF M E V
Sbjct: 327 YAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVN 382
Query: 179 QTQHYACVV 187
++ +ACV+
Sbjct: 383 RSA-FACVL 390
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 47/274 (17%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT ++ GYA+ G EEA VF M + +A+S+
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--------------------NAVSWN 290
Query: 62 QYVHSYISTRYDLSVSNLVG----------NAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
V +YI R L N ++ Y + G + A VF+ + KD +S
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +++ + GC + LQLF M G + + F ++S C+ ++ G+ L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG--- 407
Query: 172 TVYEIVPQTQHYACVVD-----MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH- 225
++ C V MY + G +E+A EM E + W ++ H
Sbjct: 408 ---RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463
Query: 226 ---RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
E+FD +R ++ VG A S++
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 43/308 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP+R ++ M+ GY+ G A S+F+ + + N TL++ L+ SS++ A
Sbjct: 64 MPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYN--TLLHALAVSSSLADARG 121
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINM----------------------YVKCGDVGIA 97
+ S Y++ +S+ + ++++ YV+ G V A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+FN D ISW+ ++SG G +A +LF M V V++ ++S +
Sbjct: 182 RGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARR 237
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G + + LF A + V ++ T VV Y + G+LEEA MP E W A
Sbjct: 238 GDMVEARRLFDA-APVRDVFTWT----AVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNA 291
Query: 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ A I R M D ++ +V ++ M +A A E+A + D +
Sbjct: 292 MV-AAYIQR--RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT-----M 343
Query: 278 KKKTGCSW 285
+K SW
Sbjct: 344 PQKDAVSW 351
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW M+ Y++ G EE + +F EM + E N + VLS C+ I+AL
Sbjct: 343 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALEC 401
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + R V VGNA++ MY KCG++ A F + +D++SW+T+I+G A
Sbjct: 402 GMQLHGRL-IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 460
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL++F +M PDD+T + +++ACSH GLV++G+ F +M + + +
Sbjct: 461 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 520
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA +++MP E + ++WGALL A RIHRN E+ +++
Sbjct: 521 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 580
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + +W DA K+R + G+KK G SWIEV +
Sbjct: 581 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKV 632
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 47/274 (17%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT ++ GYA+ G EEA VF M + +A+S+
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--------------------NAVSWN 290
Query: 62 QYVHSYISTRYDLSVSNLVG----------NAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
V +YI R L N ++ Y + G + A VF+ + KD +S
Sbjct: 291 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 350
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +++ + GC + LQLF M G + + F ++S C+ ++ G+ L
Sbjct: 351 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG--- 407
Query: 172 TVYEIVPQTQHYACVVD-----MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH- 225
++ C V MY + G +E+A EM E + W ++ H
Sbjct: 408 ---RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 463
Query: 226 ---RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
E+FD +R ++ VG A S++
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 131/308 (42%), Gaps = 43/308 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP+R ++ M+ GY+ G A S+F+ + + N TL++ L+ SS++ A
Sbjct: 64 MPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYN--TLLHALAVSSSLADARG 121
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINM----------------------YVKCGDVGIA 97
+ S Y++ +S+ + ++++ YV+ G V A
Sbjct: 122 LFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA 181
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+FN D+ISW+ ++SG G +A +LF M V V++ ++S +
Sbjct: 182 RGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARR 237
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G + + LF A + V ++ T VV Y + G+LEEA MP E W A
Sbjct: 238 GDMVEARRLFDA-APVRDVFTWT----AVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNA 291
Query: 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ A I R M D ++ +V ++ M +A A E+A + D +
Sbjct: 292 MV-AAYIQR--RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDT-----M 343
Query: 278 KKKTGCSW 285
+K SW
Sbjct: 344 PQKDAVSW 351
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 184/293 (62%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD SWT ++ GYA+ E+ V F+ M + + P++ATL LS CS +++L
Sbjct: 515 LKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLR-ENIRPSDATLAVSLSVCSDMASLGS 573
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +HS+ I + ++ S++V A+++MYVKCG++ A +F+ +D ++W+T+I G
Sbjct: 574 GLQLHSWAIKSGWN---SSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGY 630
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ +G G +AL F M+ G PD +TF+ ++SACSH GL+++G FK++S++Y I P
Sbjct: 631 SQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPT 690
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ +AG L EAE+ I +MP+ + S+W +L ACRIHRN E+ + + L
Sbjct: 691 MEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLF 750
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A RW D ++R+ + G+KK+ GCSWIE+N I
Sbjct: 751 ELEPHDASSSILLSNIYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQI 803
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 101/207 (48%), Gaps = 8/207 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+V+WT MI + G ++A+ +F M + A PN TL +VL ACS S F
Sbjct: 111 MPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIA-PNGFTLASVLKACSGGSHSKF 169
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH + L VG++++ Y CG++ A V L + +SW+ +++G A
Sbjct: 170 THQVHGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYA 228
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R+ + + ++ +G T ++ C GL G ++V + +T
Sbjct: 229 RHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQ---SVHASVIKRGLET 285
Query: 181 QHY--ACVVDMYGRAGLLEEA-EAFIR 204
+ +C+V+MY R EEA E FIR
Sbjct: 286 DNVLNSCLVEMYSRCLSAEEAYEVFIR 312
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 6/202 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D SW T++ + CE+ + +F++M + N+ T V+VL C+S+ L FG V
Sbjct: 418 DTFSWNTILSAFYSGSNCEQGLRIFKQM-ACEGFSANKYTYVSVLRCCTSLMNLRFGTQV 476
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I + L V +++MY + G A VF L +D SW+ ++SG A
Sbjct: 477 HACI-LKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEE 535
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHY 183
+ ++ F M+ + P D T +S CS + GL L A+ + + +
Sbjct: 536 AEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWN---SSVVS 592
Query: 184 ACVVDMYGRAGLLEEAEAFIRE 205
+VDMY + G + +AE E
Sbjct: 593 GALVDMYVKCGNIADAEMLFHE 614
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C+ L GQ +H+ + R L + ++++NMY KCG + A +VF+ + ++D
Sbjct: 57 LQDCAVRRTLRRGQELHARL-LRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRD 115
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
+++W+ +IS G QAL +F+ M G+ P+ T +++ ACS G +
Sbjct: 116 IVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGS---HSKFTHQ 172
Query: 169 AMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V ++ Y + +V+ Y G L+ AE + +P ++ S W ALLN H
Sbjct: 173 VHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVS-WNALLNGYARH 230
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R VSW ++ GYA G + + +++ + + E ++ TL VL C + +
Sbjct: 212 LPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGD-EISKYTLPTVLKCCMELGLAKY 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH+ + R L N++ + ++ MY +C A +VF + D++ S +IS
Sbjct: 271 GQSVHASVIKR-GLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFD 329
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
+ +AL LF M GV P+ F+ + S H +V G + K
Sbjct: 330 RHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKG 389
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +++MY + G +++A ++ E + W +L+A
Sbjct: 390 VGDA------------ILNMYVKVGAVQDATVTF-DLIHEPDTFSWNTILSA 428
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV + MI + EA+ +F +M +PN V + S + + V
Sbjct: 317 DVVHCSAMISCFDRHDMAWEALDLFVKMSGMG-VKPNHYIFVGIAGVASRTGDANLCRSV 375
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+YI + ++ VG+A++NMYVK G V A F+++ D SW+T++S
Sbjct: 376 HAYI-VKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSN 434
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS 155
Q L++F M G + T+++++ C+
Sbjct: 435 CEQGLRIFKQMACEGFSANKYTYVSVLRCCT 465
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 177/289 (61%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSW M+ YA G E + VF M P+ TLVNVLSAC+S+ +LS
Sbjct: 233 MPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQ 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH YI ++ + + V A+++MY KCG + A++VF + +D+ +W+++I+GL+
Sbjct: 293 GEWVHVYID-KHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLS 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G+ AL++FS M+ G P+ +TFI ++SAC+H GL+DQ LF+ M++VY I P
Sbjct: 352 VHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTI 411
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G EEAE + E+P + + +LL AC+ E + I L+
Sbjct: 412 EHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLE 471
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ MSN +A RW++A ++R ++R +KK GCS IEV+
Sbjct: 472 SNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVD 520
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 105/226 (46%), Gaps = 44/226 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW +++ Y ++G EEA ++F EME+
Sbjct: 171 MPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEE-------------------------- 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V S+ N +I+ Y G V A +VF+ + KD++SW+ +++ A
Sbjct: 205 -RNVESW--------------NFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYA 249
Query: 121 MNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
GC + L++F++M+ + PD T + ++SAC+ G + QG + + + I +
Sbjct: 250 HVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDK-HGIEIE 308
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G +++A R+ + + S W +++ +H
Sbjct: 309 GFVATALVDMYSKCGKIDKALEVFRDTS-KRDVSTWNSIITGLSVH 353
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
+ ++I YA E A++VF+EM P++ + VL AC++ G+ +H
Sbjct: 77 THNSVIRAYANSSTPEIALTVFREM-LLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHG- 134
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+ + DL V N +IN+Y + G IA +V + + +D +SW++++S G +
Sbjct: 135 LFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEE 194
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
A LF M V ++ +IS + GLV + +F +M
Sbjct: 195 ARALFDEMEERNV----ESWNFMISGYAAAGLVKEAREVFDSM 233
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 35/246 (14%)
Query: 49 LSACSS---ISALSFGQYVHSYISTR------------YD-LSVSNLVGNAVINMYVKCG 92
+SACSS + LSF + S + + +D S S LV A N K
Sbjct: 1 MSACSSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKT- 59
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
V A + N + + + ++VI A + AL +F M++ VFPD +F ++
Sbjct: 60 -VSYAHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLK 118
Query: 153 ACSHGGLVDQGLI---LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
AC+ ++G LF V ++ + ++++YGR+G E A + MP+
Sbjct: 119 ACAAFCGFEEGRQIHGLFMKSDLVTDVFVEN----TLINVYGRSGYFEIARKVLDRMPVR 174
Query: 210 --AEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN 266
W S+ A L+ + +FD + + +V ++ M + +A A ++A
Sbjct: 175 DAVSWNSLLSAYLDKGLVEEARALFDEMEER-------NVESWNFMISGYAAAGLVKEAR 227
Query: 267 KIRDEI 272
++ D +
Sbjct: 228 EVFDSM 233
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +SW M+ GY G E+A+ +F +M ++++ +P + T ++AC + AL
Sbjct: 392 MPYKSELSWMVMVSGYVHGGLAEDALKLFNQM-RSEDVKPCDYTYAGAVAACGELGALKH 450
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ + SN GNA++ MY +CG V A VF ++ D +SW+ +IS L
Sbjct: 451 GKQLHAHL-VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALG 509
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL+LF M+ G++PD ++F+ +++AC+H GLVD G F++M + I P
Sbjct: 510 QHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGE 569
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYA ++D+ GRAG + EA I+ MP E ++W A+L+ CRI+ + E+ +L
Sbjct: 570 DHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFK 629
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
GT+ L+SNT++ A RW DA ++R +R G+KK+ GCSWIEV
Sbjct: 630 MVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 677
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 13/222 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV W MI GY + G C EA +F+ M +K P+E T ++LSAC++ G+ V
Sbjct: 261 DVV-WNAMISGYVQSGMCAEAFELFRRM-VSKRIPPDEFTFTSLLSACANAGFFLHGKSV 318
Query: 65 H-SYISTRYDL--SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H +I + D + V NA++ +Y K G + +A ++F+ + KD++SW+T++SG
Sbjct: 319 HGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIE 378
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+GC A ++F M + +++++ ++S HGGL + L LF M + ++ P
Sbjct: 379 SGCLDNAARIFKEM----PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS-EDVKPCDY 433
Query: 182 HYACVVDMYGRAGLLEEAE---AFIREMPIEAEWSVWGALLN 220
YA V G G L+ + A + + EA S ALL
Sbjct: 434 TYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLT 475
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 139/325 (42%), Gaps = 63/325 (19%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFG 61
+RD V MI +A AVSVF+ + + ++ P++ + ++LSA + L+
Sbjct: 119 RRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVS 178
Query: 62 QYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGI---AIQVFNMLAYKDMISWSTV- 115
+ + + L + V NA+I +Y+KC G+ A +V + + KD ++W+T+
Sbjct: 179 HCTQLHCAV-HKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIV 237
Query: 116 ------------------------------ISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
ISG +G +A +LF M+ + PD+
Sbjct: 238 VGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEF 297
Query: 146 TFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAF 202
TF +L+SAC++ G G + + + + VP+ +V +Y ++G + A
Sbjct: 298 TFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKI 357
Query: 203 IREMPIE--AEWSVW-------GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253
M ++ W+ G L NA RI + EM P + EL ++ +M
Sbjct: 358 FDSMTLKDVVSWNTILSGYIESGCLDNAARIFK--EM--PYKSEL---------SWMVMV 404
Query: 254 NTFAGADRWEDANKIRDEIRRMGLK 278
+ + EDA K+ +++R +K
Sbjct: 405 SGYVHGGLAEDALKLFNQMRSEDVK 429
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 189/293 (64%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D +W+ MI Y +G +A+ +F+ M++ + PN +L++VLS C+ ++ L
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQR-EGIRPNFPSLISVLSVCAGLANLDH 430
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ + +++DL V V + +++MY+KCG++ A QVF+ A KD++ W+++I+G
Sbjct: 431 GREIHAQLVRSQFDLDV--YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL++F M +G+ PDDVTF+ ++SACS+ G V +GL +F +M T Y++ +
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAG L EA I +MP+EA+ +WGALL ACR H ++ + ++L+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G F L+SN +A RW+D ++R +R + K GCSWI V +
Sbjct: 609 VLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKV 661
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI GY + + A +F+ M E NE + +L ++ L
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVM-----PEKNEVSWTAMLKGYTNCGRLDE 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + S + NA+I + + G+V A QVF+ + KD +WS +I
Sbjct: 334 ASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G AL+LF +M G+ P+ + I+++S C+ +D G
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT M+ GY + G EA ++F +M E N + +L +
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVVSWTVMLGGLLQEGRIDE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + ++ +N++G Y + G + A +F+ + ++++SW+T+I+G
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGG-----YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N A +LF +M ++V++ A++ ++ G +D+ LF AM P
Sbjct: 296 QNQQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAM-------PIK 344
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
AC ++ +G+ G + +A +M E + W A++
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIK 385
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 42/237 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++SW +++ GY + +EA ++F +M +E N + ++S + ++
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-----SERNTISWNGLVSGYINNGMINE 178
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ V + R N+V A++ YVK G + A +F + K+++SW+ ++ GL
Sbjct: 179 AREVFDRMPER------NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM--------- 170
G +A +LF +M V VT +I G + + +LF M
Sbjct: 233 LQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWT 288
Query: 171 ---------------STVYEIVPQTQH--YACVVDMYGRAGLLEEAEAFIREMPIEA 210
++E++P+ + ++ Y G L+EA MPI++
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS 345
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I Y + G + A VF+ + K++ISW+++++G N ++A +F M
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEA 199
+ +++ L+S + G++++ +F M P+ + +V Y + G++ EA
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRM-------PERNVVSWTAMVRGYVKEGMISEA 210
Query: 200 EAFIREMPIE--AEWSV-WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF 249
E +MP + W+V G LL RI +FD + ++ V + +G +
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGY 263
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 185/294 (62%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW +MI Y G EA+ +F +M ++ P+EATLV++L+ACS + L
Sbjct: 281 MPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVV-PDEATLVSILAACSQLGDLVM 339
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+YI S + V+ + N++I+MY KCG V A+ +F + K+++SW+ +I L
Sbjct: 340 GKKIHNYILSNKGAYGVT--LYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGAL 397
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++GCG +A++LF M +G PD++T L+SACSH GLVD GL F M +Y + +
Sbjct: 398 ALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPRE 457
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR GLL EA I MP++ + VWGALL ACRIH N E+ I ++L+
Sbjct: 458 IEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLL 517
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ S G + L+SN + A RWED KIR + G+KK S IE++ I+
Sbjct: 518 ELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIY 571
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 128/257 (49%), Gaps = 43/257 (16%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ +VSW +MIGGYA G +EA +F++M + EP+ T VN+LS CS L G+Y
Sbjct: 152 KTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWG-MEPDGFTFVNLLSVCSQSRDLDLGRY 210
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGD------------------------------ 93
VH I + + +V NA+++MY KCG+
Sbjct: 211 VHFCIEIT-GVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHG 269
Query: 94 -VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ +A Q+F+ + K+++SW+++IS G R+AL LF+ M + V PD+ T +++++
Sbjct: 270 SIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILA 329
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQH----YACVVDMYGRAGLLEEAEAFIREMPI 208
ACS G L++ K + Y + + + Y ++DMY + G + A EMP
Sbjct: 330 ACSQLG----DLVMGKKIHN-YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPG 384
Query: 209 EAEWSVWGALLNACRIH 225
+ S W ++ A +H
Sbjct: 385 KNLVS-WNVIIGALALH 400
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 4/245 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + + ++I GY+ +AV +F+ M PNE TL VL AC SA
Sbjct: 48 IPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRM-ICSGLSPNEFTLPFVLKACGCKSAYWE 106
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH ++ + + V NA+I +YV CG + A ++F+ + K ++SW+++I G A
Sbjct: 107 AVLVHG-LAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYA 165
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++A LF M G+ PD TF+ L+S CS +D G + + +
Sbjct: 166 HMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDII 225
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
A +VDMY + G L A+A I + E W ++++A H + E+ I ++
Sbjct: 226 VRNA-LVDMYAKCGNLHSAQA-IFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPG 283
Query: 241 KKGVS 245
K VS
Sbjct: 284 KNVVS 288
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 187/294 (63%), Gaps = 7/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE----PNEATLVNVLSACSSIS 56
MP+R+V+SW+ +I GY G +EA+ +F+EM+ K E PN+ T+ VLSAC +
Sbjct: 153 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLG 212
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTV 115
AL G++VHSYI +Y + + ++G A+I+MY KCG + A +VF+ L + KD+ ++S +
Sbjct: 213 ALEQGKWVHSYID-KYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAM 271
Query: 116 ISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
I LAM G + Q+FS M N + P+ VTF+ ++ AC H GL+++G FK M+ +
Sbjct: 272 ICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEF 331
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
I P QHY C+VD+YGR+GL++EAE+FI MP+E + +WG+LL+ R+ + + +
Sbjct: 332 GITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGA 391
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+ ++ G + L+SN +A RW + +IR E+ G+KK GCS++EV
Sbjct: 392 LKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEV 445
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 39/231 (16%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
+SV+ M + P+ T +L + + L GQ H+ I + L V ++
Sbjct: 45 PISVYFRM-RHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQI-LLFGLDKDPFVRTSL 102
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDM-------------------------------ISWS 113
+NMY CGD+ A+++F+ KD+ ISWS
Sbjct: 103 LNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWS 162
Query: 114 TVISGLAMNGCGRQALQLFSLMII---NGVF--PDDVTFIALISACSHGGLVDQGLILFK 168
+I+G M G ++AL LF M + N VF P+ T ++SAC G ++QG +
Sbjct: 163 CLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHS 222
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ Y + ++DMY + G LE A+ + + + + A++
Sbjct: 223 YIDK-YGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMI 272
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 189/293 (64%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D +W+ MI Y +G +A+ +F+ M++ + PN +L++VLS C+ ++ L
Sbjct: 372 MREKDEGTWSAMIKVYERKGLELDALELFRMMQR-EGIRPNFPSLISVLSVCAGLANLDH 430
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ + +++DL V V + +++MY+KCG++ A QVF+ A KD++ W+++I+G
Sbjct: 431 GREIHAQLVRSQFDLDV--YVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL++F M +G+ PDDVTF+ ++SACS+ G V +GL +F +M T Y++ +
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAG L EA I +MP+EA+ +WGALL ACR H ++ + ++L+
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G F L+SN +A RW+D ++R +R + K GCSWI V +
Sbjct: 609 VLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKV 661
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWTTMI GY + + A +F+ M E NE + +L ++ L
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVM-----PEKNEVSWTAMLKGYTNCGRLDE 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + S + NA+I + + G+V A QVF+ + KD +WS +I
Sbjct: 334 ASELFNAMPIK-----SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYE 388
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G AL+LF +M G+ P+ + I+++S C+ +D G
Sbjct: 389 RKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG 431
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT M+ GY + G EA ++F +M E N + +L +
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQM-----PEKNVVSWTVMLGGLLQEGRIDE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + ++ +N++G Y + G + A +F+ + ++++SW+T+I+G
Sbjct: 241 ACRLFDMMPEKDVVTRTNMIGG-----YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYV 295
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N A +LF +M ++V++ A++ ++ G +D+ LF AM P
Sbjct: 296 QNQQVDIARKLFEVM----PEKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIK 344
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
AC ++ +G+ G + +A +M E + W A++
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMIK 385
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 102/237 (43%), Gaps = 42/237 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++SW +++ GY + +EA ++F +M +E N + ++S + ++
Sbjct: 124 MRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-----SERNTISWNGLVSGYINNGMINE 178
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ V + R N+V A++ YVK G + A +F + K+++SW+ ++ GL
Sbjct: 179 AREVFDRMPER------NVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM--------- 170
G +A +LF +M V VT +I G + + +LF M
Sbjct: 233 LQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWT 288
Query: 171 ---------------STVYEIVPQTQH--YACVVDMYGRAGLLEEAEAFIREMPIEA 210
++E++P+ + ++ Y G L+EA MPI++
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKS 345
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 84/173 (48%), Gaps = 16/173 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I Y + G + A VF+ + K++ISW+++++G N ++A +F M
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER--- 158
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEA 199
+ +++ L+S + G++++ +F M P+ + +V Y + G++ EA
Sbjct: 159 -NTISWNGLVSGYINNGMINEAREVFDRM-------PERNVVSWTAMVRGYVKEGMISEA 210
Query: 200 EAFIREMPIE--AEWSV-WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF 249
E +MP + W+V G LL RI +FD + ++ V + +G +
Sbjct: 211 ETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGY 263
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 180/295 (61%), Gaps = 13/295 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALS 59
M RDVV WT M+ GY + G EAV VFQEM + +E A PN AT+V+V SAC+ + +L
Sbjct: 180 MQARDVVVWTGMVSGYVDTGMHLEAVEVFQEMRRGEEVASPNVATIVSVASACAGLGSLE 239
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +++H Y+ + +V NA+++MY KCG V A +FN++ KD+ SW+T+ISGL
Sbjct: 240 YAKWLHGYVE-KLGFGSDLIVTNALMDMYGKCGGVESARALFNLMHEKDLHSWTTIISGL 298
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G ++ L LFS M GV PD TFI ++SACSH GLVD+G+ +F +M + Y++ P
Sbjct: 299 ASHGHVKEGLALFSSMQKMGVLPDSTTFIVVLSACSHAGLVDEGMCIFNSMESKYKVTPD 358
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD++ RAGLL A I MP + ++ GALL+AC I+ E+ ELV
Sbjct: 359 IKHYGCMVDLFSRAGLLSRAFQLIDSMPFDPNLAILGALLSACSINNELEI-----GELV 413
Query: 240 NKKGVSV-----GTFALMSNTFAGADRWEDANKIRDEIRRMG-LKKKTGCSWIEV 288
KK SV G L+SN +A + W + + +R +IR +K G S + V
Sbjct: 414 LKKIESVCSYKGGANVLLSNIYANQNLWHEVDSLRRKIRNEATFRKPPGQSLVAV 468
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A+ +F +M ++ + T ++ ACS S + +H S R S A+
Sbjct: 104 ALRLFGQMHH-RDVPADTYTFPFLIHACSG-SDPPLCESLHGQ-SIRVGYSSHLFTQTAL 160
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--VFP 142
+NMY CG A +VF+ + +D++ W+ ++SG G +A+++F M P
Sbjct: 161 MNMYFVCGLAAPARRVFDEMQARDVVVWTGMVSGYVDTGMHLEAVEVFQEMRRGEEVASP 220
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEA 199
+ T +++ SAC+ G ++ L + + +++ ++DMYG+ G +E A
Sbjct: 221 NVATIVSVASACAGLGSLEYAKWLHGYVEKLGFGSDLIVTN----ALMDMYGKCGGVESA 276
Query: 200 EAFIREMPIEAEWSVWGALLNACRIH 225
A M E + W +++ H
Sbjct: 277 RALFNLMH-EKDLHSWTTIISGLASH 301
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 179/290 (61%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT M+ A++G EA +F EM K E + +V++L+AC+ L+
Sbjct: 358 MPAKNLVTWTIMVSACAQKGLVGEAGRLFTEM-KEAAIELDVVAVVSILAACAESGCLAL 416
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ +H ++ R L S LV NA+++M+ KCG V A +F+ + KD +SW+ +I G
Sbjct: 417 GKRIHRHVRQR-KLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGF 475
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +AL LF+ M G PD VT I ++SAC+H GLV++G F M T Y I P+
Sbjct: 476 AMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPE 535
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GR GL++EA I+ MP E +WG+LL+ACR+H+N E + EL
Sbjct: 536 IEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANELS 595
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + + G +A++SN +A A +W D K R +++ G +K G SWIE++
Sbjct: 596 NLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELD 645
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 112/250 (44%), Gaps = 46/250 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW TM+ GYA+ G EEA +FQ M
Sbjct: 296 MPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMP--------------------------- 328
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V S+ + V++ Y K GD+ +A +F+ + K++++W+ ++S A
Sbjct: 329 GRNVVSW--------------STVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACA 374
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +LF+ M + D V +++++AC+ G + G + + + ++ T
Sbjct: 375 QKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQ-RKLGRST 433
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQ 236
++DM+ + G + A+ +E + W ++ +H + E +F ++Q
Sbjct: 434 LVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQ 493
Query: 237 ELVNKKGVSV 246
+ + V++
Sbjct: 494 QGFHPDAVTL 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 15/212 (7%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70
T++ YA A++VF +M + + L+ L+ + +V S
Sbjct: 177 TLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAGVTPVRAAHTHVFKLGSV 236
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
VGNA+I+ Y K + A +VF+ + +D++SW+T ++ + G A
Sbjct: 237 E-----DTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARS 291
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMY 190
+F M D V++ ++ + G ++ LF+ M + ++ VV Y
Sbjct: 292 MFDEMPEK----DTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVV-----SWSTVVSAY 342
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ G +E A +MP + W +++AC
Sbjct: 343 CKKGDMEMARVIFDKMPAK-NLVTWTIMVSAC 373
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 178/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V++WTTM+ GY + E A+ +F M + PN+ T + + ACS+++ LS
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGM-LVEGIRPNQVTFLGAVDACSNLAGLSE 337
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + + + ++N+Y KCG++ +A +VF++ KD+ISW+ +I+ A
Sbjct: 338 GQQVHQMI-CKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYA 396
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M G P+DVT++ L+SACSH GLVD+GL +F+ M I +
Sbjct: 397 HHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRD 456
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ RAG L +A+ I + +E +VW ALL C H N+ + D + L+
Sbjct: 457 EHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLE 516
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+ N +A A +W++A KIR E+ GLKK+ GCSWIEV +
Sbjct: 517 AEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKV 568
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V++WTTM+ G A G +EA ++F M + NV+S + IS +
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVDEARALFDGMPER-----------NVVSWNAMISGYAR 234
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + ++ N +I +++ D+ A +F+ + +++I+W+T+++G
Sbjct: 235 NHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGY 294
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ ALQ+F+ M++ G+ P+ VTF+ + ACS+ + +G
Sbjct: 295 LQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEG 338
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 103/239 (43%), Gaps = 27/239 (11%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSWT ++ YA +G +A ++F +A N T +LS + +
Sbjct: 62 PDRDVVSWTALVAAYARQGMLHDARALFDR----PDARRNVVTWTALLSGYARAGRVDEA 117
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R N+V N ++ Y G V A +F+ + +D SW+ +++ L
Sbjct: 118 EALFQRMPER------NVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILLAALV 171
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +LF M V + + +++ + G VD+ LF M P+
Sbjct: 172 RSGNMDKARKLFDRMPERNV----MAWTTMVAGIARSGSVDEARALFDGM-------PER 220
Query: 181 Q--HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDPI 234
+ ++ Y R ++EA +MP A W++ + + R ++FD +
Sbjct: 221 NVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKM 279
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+VSWT++I G + ++++ +F +M+ + EP+ L +VLSAC+S+ AL +
Sbjct: 264 LPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISG-VEPDRIILTSVLSACASLGALDY 322
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V YI R + +G A+++MY KCG + +A+ +FN + +++ +W+ ++ GLA
Sbjct: 323 GRWVQEYIE-RQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLA 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQ 179
M+G G +AL+ F LMI G+ P++VTF+A+++AC H GLV +G F M S + P+
Sbjct: 382 MHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPR 441
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ RAGLL+EA FIR MP+ + +WGALL+AC+ + N E+ I L+
Sbjct: 442 LEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILSHLL 501
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K G + L+SN +A +RW+D ++R ++ G++K G S IEV+
Sbjct: 502 ELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVD 551
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 13/228 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSWT +I GY G +EA+++F +M+ PN AT V+VL AC + LS
Sbjct: 166 MLVRDVVSWTGLISGYVRTGLFDEAINLFLKMDVV----PNVATFVSVLVACGRMGYLSM 221
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + R + +VGNA+++MYVKC + A ++F+ L +D++SW+++ISGL
Sbjct: 222 GKGVHGLVYKR-AFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLV 280
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIV 177
+ +L+LF M I+GV PD + +++SAC+ G +D G + + ++I
Sbjct: 281 QCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIH 340
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T +VDMY + G +E A +P ++ W ALL +H
Sbjct: 341 IGTA----LVDMYAKCGCIEMALHIFNGIPNRNIFT-WNALLGGLAMH 383
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 14/205 (6%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ + T+I YA + A V+ + P+ T VL AC+ + G+ VH
Sbjct: 71 LPYNTLIAAYASSCTPKAAFLVYGRIVGNGFV-PDMYTFPVVLKACTKFLGVQEGEQVHG 129
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
++ + V N++++ Y CG G A +VF+ + +D++SW+ +ISG G
Sbjct: 130 -VAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFD 188
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVPQTQH 182
+A+ LF M V P+ TF++++ AC G + G +++K + +V
Sbjct: 189 EAINLFLKM---DVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNA-- 243
Query: 183 YACVVDMYGRAGLLEEAEAFIREMP 207
+VDMY + L EA E+P
Sbjct: 244 ---LVDMYVKCECLCEARKLFDELP 265
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VSW M+ Y++ G EE + +F EM + E N + VLS C+ I+AL
Sbjct: 218 MPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW-VNRSAFACVLSTCADIAALEC 276
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + R V VGNA++ MY KCG++ A F + +D++SW+T+I+G A
Sbjct: 277 GMQLHGRL-IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYA 335
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL++F +M PDD+T + +++ACSH GLV++G+ F +M + + +
Sbjct: 336 RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKP 395
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L EA +++MP E + ++WGALL A RIHRN E+ +++
Sbjct: 396 EHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFE 455
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A + +W DA K+R + G+KK G SWIEV +
Sbjct: 456 LEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKV 507
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 110/274 (40%), Gaps = 47/274 (17%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV +WT ++ GYA+ G EEA VF M + +A+S+
Sbjct: 126 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER--------------------NAVSWN 165
Query: 62 QYVHSYISTRYDLSVSNLVG----------NAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
V +YI R L N ++ Y + G + A VF+ + KD +S
Sbjct: 166 AMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVS 225
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +++ + GC + LQLF M G + + F ++S C+ ++ G+ L
Sbjct: 226 WAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHG--- 282
Query: 172 TVYEIVPQTQHYACVVD-----MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH- 225
++ C V MY + G +E+A EM E + W ++ H
Sbjct: 283 ---RLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHG 338
Query: 226 ---RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
E+FD +R ++ VG A S++
Sbjct: 339 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 372
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 72/246 (29%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++D VSW M+ Y G EEA +F N T +V+S
Sbjct: 33 PEKDAVSWNGMLAAYVRNGRVEEARGLF-----------NSRTEWDVIS----------- 70
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
NA+++ YV+ G + A ++F+ + +D++SW+ ++SG A
Sbjct: 71 -------------------WNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYAR 111
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM----------- 170
G +A +LF + VF T+ A++S + G++++ +F AM
Sbjct: 112 RGDMVEARRLFDAAPVRDVF----TWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAM 167
Query: 171 -------------STVYEIVP--QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
++ ++P + ++ Y +AG+LEEA+A MP + + W
Sbjct: 168 VAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP-QKDAVSW 226
Query: 216 GALLNA 221
A+L A
Sbjct: 227 AAMLAA 232
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 173/287 (60%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PKRDVV+W MI GY G ++A+ +F+EM E P+E T++++LSAC+ + L
Sbjct: 201 VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDA 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H IS +S L+GNA+I+MY KCG + A++VF + KD+ +W++V+ GLA
Sbjct: 260 GQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLA 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +++ LF+ M + PD++TF+ ++ ACSH G V++G F M Y I P
Sbjct: 320 FHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNI 379
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA FI M IE VW LL ACRIH N E+ +L+
Sbjct: 380 RHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLK 439
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN +A W+ K+R + G++K+ GCS IE
Sbjct: 440 MRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 486
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 74/336 (22%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D W TMI G A+ A+S++ +ME P++ T VL AC+ + + G V
Sbjct: 42 DTFMWNTMIRGSAQSPSPLNAISLYSQMENGC-VRPDKFTFPFVLKACTRLCWVKMGFGV 100
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDV------------------------------ 94
H + R + V N +I + CGD+
Sbjct: 101 HGRV-FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGE 159
Query: 95 -GIAIQVFNMLAYKDMISWSTVISGLAMNG-----------------------------C 124
G+A Q+F+ + KD++SW+ +I+G A G C
Sbjct: 160 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 219
Query: 125 G--RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +QAL++F M G PD+VT ++L+SAC+ G +D G + +S +
Sbjct: 220 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 279
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQEL 238
++DMY + G + A + M E + S W ++L H + E +F +R+
Sbjct: 280 GNALIDMYAKCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLK 338
Query: 239 VNKKGVS-VGTFALMSNTFAGADRWEDANKIRDEIR 273
+ ++ VG S+ A R E+ + D +R
Sbjct: 339 IRPDEITFVGVLVACSH----AGRVEEGRQYFDLMR 370
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A Q+F + D W+T+I G A + A+ L+S M V PD TF ++
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 152 SACS 155
AC+
Sbjct: 86 KACT 89
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D+V++T+MI Y++ G EEA+ ++ M+ ++ +P+ ++ +AC+++SA G
Sbjct: 452 PAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD-RDIKPDAFIFSSLFNACANLSAYEQG 510
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H ++ + L GN+++NMY KCG + A +FN ++++ ++SWS +I GLA
Sbjct: 511 KQIHVHV-LKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQ 569
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G GR+ALQLF M+ NG+ P+ +T ++++SAC+H GLV + F M ++ I P +
Sbjct: 570 HGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQE 629
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GR G L+EA ++EMP +A +VWGALL A RIH+N E+ + L+
Sbjct: 630 HYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTL 689
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT L++N +A W++ K+R ++ +KK+ G SWIE+ ++
Sbjct: 690 EPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVY 741
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 151/314 (48%), Gaps = 42/314 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK D+VSW +I G + A+ + +M + A P+ TL + L AC++I +
Sbjct: 249 IPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVA-PSMFTLSSALKACAAIGLVKL 307
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS + + D+ + VG +I+MY KCG + A VF+++ KD+I W+++ISG +
Sbjct: 308 GRQLHSAL-MKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYS 366
Query: 121 MNGCGRQALQLFSLMIINGV---------------------FPDDVTFIALISACSHGGL 159
G +A+ LF+ M G+ F + V I++ S + G
Sbjct: 367 NCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGY 426
Query: 160 VDQGLI-------LFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEA-EAFIR--EMP 207
V L+ L + + V+E+ P Y ++ Y + GL EEA + ++R +
Sbjct: 427 VANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRD 486
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQELVN--KKGVSVGTFALMS--NTFAGADRWE 263
I+ + ++ +L NAC N ++ +Q V+ K G+ FA S N +A +
Sbjct: 487 IKPDAFIFSSLFNAC---ANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSID 543
Query: 264 DANKIRDEIRRMGL 277
DA+ I +EI G+
Sbjct: 544 DASCIFNEISWRGI 557
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 44/257 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEM-------------------EKTKEAE------ 39
D+VSW+ +I GY + G EEA+ + EM T+ E
Sbjct: 112 DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIH 171
Query: 40 --------------PNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAV 84
PNE +L VL+AC+ + ++G VH Y I YD NA+
Sbjct: 172 RVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYD--SDPFSANAL 229
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
++MY K G AI VF + D++SW+ VI+G ++ AL+L M V P
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204
T + + AC+ GLV G L A+ + ++ P + ++DMY + GLL++A
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKM-DMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348
Query: 205 EMPIEAEWSVWGALLNA 221
MP + + VW ++++
Sbjct: 349 LMPXK-DVIVWNSIISG 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 40/185 (21%)
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
+N+Y KC +A ++ + D++SWS +ISG NG G +AL + M + G ++
Sbjct: 89 VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148
Query: 145 VTFIALISACSHGGLVDQGLILFK-----------------AMSTVYEIVP--QTQHYA- 184
TF +++ CS ++ G + + ++STV + ++Y
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208
Query: 185 -------------------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY ++G E A A E+P + + W A++ C +H
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVLH 267
Query: 226 RNDEM 230
+++
Sbjct: 268 EKNDL 272
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 187/291 (64%), Gaps = 4/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+ VSWT +I GYA G EA+ VFQ M + +P+E TL+ VLSAC+ + +L G+
Sbjct: 213 RNAVSWTCVISGYARSGRASEAIEVFQRM-LMENVDPDEVTLLAVLSACADLGSLELGER 271
Query: 64 VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ SY+ R + +VS + NAVI+MY K G++ A++VF + +++++W+T+I+GLA +
Sbjct: 272 ICSYVDHRGMNRAVS--LNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATH 329
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL +F M+ GV P+DVTFIA++SACSH G VD G F +M + Y I P +H
Sbjct: 330 GHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEH 389
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAG L EAE I+ MP E+ ++WG+LL A +H + ++ + +L+ +
Sbjct: 390 YGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDVGERALYQLIKLE 449
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N ++ RW+++ +R ++ +G+KK G S IEV ++
Sbjct: 450 PNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVENRVY 500
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
A+P+ T VL +S + FG+ VH + +D SV + G +I MY CG +G
Sbjct: 112 AKPDTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTG--LIQMYSSCGGLGD 169
Query: 97 AIQVFNMLAYKDM---------------------------------ISWSTVISGLAMNG 123
A +VF+ + +D+ +SW+ VISG A +G
Sbjct: 170 ARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSG 229
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVP 178
+A+++F M++ V PD+VT +A++SAC+ G ++ G + + M+ +
Sbjct: 230 RASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL-- 287
Query: 179 QTQHYACVVDMYGRAGLLEEA 199
V+DMY ++G + +A
Sbjct: 288 ----NNAVIDMYAKSGNITKA 304
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+VV+WTT+I G A G EA+ +F M K +PN+ T + +LSACS + + G
Sbjct: 313 ERNVVTWTTIITGLATHGHGAEALVMFDRMVKAG-VKPNDVTFIAILSACSHVGWVDLGN 371
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+ + ++Y ++ + +I++ + G + A +V + ++
Sbjct: 372 RFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFE 416
>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 908
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/292 (42%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V +WT MI G A+ G EA S+F +M + + P+ T V++LSAC+S AL +
Sbjct: 496 MVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLR-EGIVPDATTYVSILSACASTGALEW 554
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHS+ + L VGNA+++MY KCG V A +VF+ + +D+ SW+ +I GLA
Sbjct: 555 VKEVHSH-AVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLA 613
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL LF M + G P+ +F+A++SACSH GLVD+G F +++ Y I P
Sbjct: 614 QHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTM 673
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEA+ FI MPIE + WGALL AC + N EM + +E +
Sbjct: 674 EHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLK 733
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K S T+ L+SN +A WE +R ++R G++K+ G SWIEV+ I
Sbjct: 734 LKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQI 785
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 7/223 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+V +W MIGG A++ EA+S+F +M + + P+ T VN+LSA AL + +
Sbjct: 399 RNVTTWNAMIGGVAQQKCGREALSLFLQMRR-EGFFPDATTFVNILSANVGEEALEWVKE 457
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHSY D + +L VGNA+++MY KCG+ A QVF+ + +++ +W+ +ISGLA +
Sbjct: 458 VHSYA---IDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQH 514
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GCG +A LF M+ G+ PD T+++++SAC+ G ++ + + + +V +
Sbjct: 515 GCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEW-VKEVHSHAVNAGLVSDLRV 573
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V MY + G +++A +M +E + W ++ H
Sbjct: 574 GNALVHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQH 615
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL--SACSSISAL 58
M +RD+ SWT MIGG A+ G +EA S+F +ME+ PN T +++L SA +S AL
Sbjct: 192 MVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGG-CLPNLTTYLSILNASAITSTGAL 250
Query: 59 SFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ + VH + +S+L VGNA+I+MY KCG + A VF+ + +D+ISW+ +I
Sbjct: 251 EWVKEVHKHAGKAG--FISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIG 308
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLA NGCG +A +F M G PD T+++L++ G + + K V +V
Sbjct: 309 GLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEV-GLV 367
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + V MY R G +++A+ ++ + + W A++
Sbjct: 368 SDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMI 408
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 23/235 (9%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
MIGGYAE G+ E+A+ V+ +M + + +PNE T +++L AC S +L +G+ +H++I +
Sbjct: 1 MIGGYAEYGYAEDAMKVYSQMRR-EGGQPNEITYLSILKACCSPVSLKWGKKIHAHI-IQ 58
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
V A++NMYVKCG + A +F+ + +++ISW+ +I GLA G G++A
Sbjct: 59 SGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHR 118
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD--- 188
F M G P+ T++++++A + G A+ V E+ + +D
Sbjct: 119 FLQMQREGFIPNSYTYVSILNANASAG----------ALEWVKEVHSHAVNAGLALDLRV 168
Query: 189 ------MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQ 236
MY ++G +++A M +E + W ++ H R E F Q
Sbjct: 169 GNALVHMYAKSGSIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 222
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+SW MIGG A+ G EA ++F +M++ P+ T +++L+ S A +
Sbjct: 295 MCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFV-PDSTTYLSLLNTHVSTGAWEW 353
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH + + L VG+A ++MY++CG + A +F+ LA +++ +W+ +I G+A
Sbjct: 354 VKEVHKH-AVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVA 412
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
CGR+AL LF M G FPD TF+ ++SA
Sbjct: 413 QQKCGREALSLFLQMRREGFFPDATTFVNILSA 445
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V+SWT MIGG A G +EA F +M++ + PN T V++L+A +S AL +
Sbjct: 91 MVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQR-EGFIPNSYTYVSILNANASAGALEW 149
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHS+ + L++ VGNA+++MY K G + A VF+ + +D+ SW+ +I GLA
Sbjct: 150 VKEVHSH-AVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLA 208
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+G G++A LF M G P+ T++++++A +
Sbjct: 209 QHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASA 243
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 178/280 (63%), Gaps = 2/280 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVSW MI GYA+ G +EAV VF+EM+ E PN TLV+VL A S + AL
Sbjct: 196 MPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMA-EVPPNYVTLVSVLPAMSRLGALEL 254
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y + R ++ V +++G+A+I+MY KCG + A+QVF L +++++WST+I+GLA
Sbjct: 255 GKWVHLY-AVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLA 313
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G + L F M GV P DVT+I L+SACSH GLV++G F M V + P+
Sbjct: 314 MHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRI 373
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLLEE+E I MPI+ + +W ALL AC++H N EM + + L+
Sbjct: 374 EHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLME 433
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
G++ +SN +A WE K+R ++ M + +
Sbjct: 434 LAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVSAR 473
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 56/257 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + S+ T+I +E +A+ VF EM + EPN T +V AC L
Sbjct: 48 MHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLRE 107
Query: 61 GQYVHSYISTRYDLS-----VSNLVG---------------------------------- 81
G+ VH ++ ++ L VSN+V
Sbjct: 108 GRQVHG-LAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRV 166
Query: 82 -------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
N +I+ YV+ G++ +A +F+ + + ++SW+ +I+G A +G ++A+++F
Sbjct: 167 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 226
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEIVPQTQHYACVVDMY 190
M + V P+ VT ++++ A S G ++ G L + V +++ + ++DMY
Sbjct: 227 MQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG-----SALIDMY 281
Query: 191 GRAGLLEEAEAFIREMP 207
+ G +E+A +P
Sbjct: 282 AKCGSIEKALQVFEGLP 298
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/287 (40%), Positives = 173/287 (60%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PKRDVV+W MI GY G ++A+ +F+EM E P+E T++++LSAC+ + L
Sbjct: 236 VPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLGDLDA 294
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H IS +S L+GNA+I+MY KCG + A++VF + KD+ +W++V+ GLA
Sbjct: 295 GQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLA 354
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +++ LF+ M + PD++TF+ ++ ACSH G V++G F M Y I P
Sbjct: 355 FHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNI 414
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA FI M IE VW LL ACRIH N E+ +L+
Sbjct: 415 RHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLK 474
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN +A W+ K+R + G++K+ GCS IE
Sbjct: 475 MRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLIE 521
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 74/336 (22%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D W TMI G A+ A+S++ +ME P++ T VL AC+ + + G V
Sbjct: 77 DTFMWNTMIRGSAQSPSPLNAISLYSQMENGC-VRPDKFTFPFVLKACTRLCWVKMGFGV 135
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDV------------------------------ 94
H + R + V N +I + CGD+
Sbjct: 136 HGRV-FRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGE 194
Query: 95 -GIAIQVFNMLAYKDMISWSTVISGLAMNG-----------------------------C 124
G+A Q+F+ + KD++SW+ +I+G A G C
Sbjct: 195 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 254
Query: 125 G--RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +QAL++F M G PD+VT ++L+SAC+ G +D G + +S +
Sbjct: 255 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQEL 238
++DMY + G + A + M E + S W ++L H + E +F +R+
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMR-EKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLK 373
Query: 239 VNKKGVS-VGTFALMSNTFAGADRWEDANKIRDEIR 273
+ ++ VG S+ A R E+ + D +R
Sbjct: 374 IRPDEITFVGVLVACSH----AGRVEEGRQYFDLMR 405
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 33 EKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
++ + P+ + +C++I L Q S I ++ + S L + G
Sbjct: 4 KRLTDKSPSRQQRSQLWRSCTTIGTLK--QIHASMIVKGFNSNTSALRELIYASSIAISG 61
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ A Q+F + D W+T+I G A + A+ L+S M V PD TF ++
Sbjct: 62 TMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLK 121
Query: 153 ACS 155
AC+
Sbjct: 122 ACT 124
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 177/294 (60%), Gaps = 8/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW +I GY + G EEA+S+F + K + P T N+L AC+ ++ L
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLL-KRESVCPTHYTFANILKACADLADLHL 404
Query: 61 GQYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
G H ++ ++ + VGN++I+MYVKCG V VF + +D +SW+
Sbjct: 405 GMQAHVHV-LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNA 463
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G A NG G +AL+LF M+ +G PD +T I ++SAC H G V++G F +M+ +
Sbjct: 464 MIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P HY C+VD+ GRAG LEEA++ I EMP++ + +WG+LL AC++HRN + +
Sbjct: 524 GVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYV 583
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++L + + G + L+SN +A +W DA +R +R+ G+ K+ GCSWI++
Sbjct: 584 AEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKI 637
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +W +M+ G+A+ CEEA+ F M K NE T + LSACS ++ ++
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFV-LNEYTFASGLSACSGLNDMNR 170
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS I+ LS +G+A+++MY KCG+V A QVF+ + ++++SW+++I+
Sbjct: 171 GVQIHSLIAKSPCLS-DVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYE 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL++F +M+ + V PD+VT ++ISAC+ + G + + + ++
Sbjct: 230 QNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDI 289
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPI 208
VDMY + ++EA MPI
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 124/258 (48%), Gaps = 44/258 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW ++I Y + G EA+ VFQ M ++ EP+E TL +V+SAC+S+SA+
Sbjct: 213 MGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESW-VEPDEVTLASVISACASLSAIKV 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIA 97
GQ VH+ + L ++ NA ++MY KC + G A
Sbjct: 272 GQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYA 331
Query: 98 IQ--------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ +F +A ++++SW+ +I+G NG +AL LF L+ V P TF
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFAN 391
Query: 150 LISACS-----HGGLVDQGLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
++ AC+ H G+ +L FK S + + ++DMY + G +EE
Sbjct: 392 ILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGN---SLIDMYVKCGCVEEGYL 448
Query: 202 FIREMPIEAEWSVWGALL 219
R+M +E + W A++
Sbjct: 449 VFRKM-MERDCVSWNAMI 465
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+V+ K G + A +F + +D +W++++SG A + +AL F++M G
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFV 149
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
++ TF + +SACS +++G+ + ++ + + +VDMY + G + +A+
Sbjct: 150 LNEYTFASGLSACSGLNDMNRGVQIHSLIAKS-PCLSDVYIGSALVDMYSKCGNVNDAQQ 208
Query: 202 FIREM 206
EM
Sbjct: 209 VFDEM 213
>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
Length = 1740
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 181/297 (60%), Gaps = 18/297 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + +VSW MI Y EAV +F +ME +P+ ++ +VL AC +SAL
Sbjct: 1255 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED-HAVDPDAISIASVLPACGDLSALLL 1313
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R L + L+ NA+I+MY KCG + A +VF+ + ++D++SW+++IS
Sbjct: 1314 GRRIHEYV-VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYG 1372
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG GR A+ LFS M G+ PD + F++++SACSH GL+D+G FK M+ +IVP+
Sbjct: 1373 MNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI 1432
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN--------DEMFD 232
+H+ C+VD+ GRAG ++EA FI++MP+E VWGALL+ACR++ N D++F
Sbjct: 1433 EHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQ 1492
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + L+SN +A A RWED +R ++ G+KK G S E++
Sbjct: 1493 LCPEQ--------SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELD 1541
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK++VV + MI Y +A+ VF+ M +P+ T VL A S L
Sbjct: 1086 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM-AGHGIDPDHYTYPCVLKASSGSEDLWV 1144
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ + R L ++ VGN +I+MY KCG + A +V + + +D++SW+++++G A
Sbjct: 1145 GMQIHAAV-VRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCA 1203
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
NG AL++ M + G+ PD T +L+ A ++ L
Sbjct: 1204 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 1242
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 43/224 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +++ G A G ++A+ V +EME +P+ T+ ++L A
Sbjct: 1187 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG-LKPDAGTMASLLPA--------- 1236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
V N ++ +V ++F LA K ++SW+ +I+
Sbjct: 1237 -------------------VTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYM 1271
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIV 177
N +A+ +F M + V PD ++ +++ AC G L L+L + + +
Sbjct: 1272 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC--GDL--SALLLGRRIHEYVVRKRLQ 1327
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
P ++DMY + G LE A +M S W ++++A
Sbjct: 1328 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSMISA 1370
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ + + +HS I +DL + +G ++ Y CG+ +F+ + K+++ ++ +I
Sbjct: 1040 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 1099
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLIL 166
N AL +F M +G+ PD T+ ++ A S H +V GL L
Sbjct: 1100 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 1159
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
+ ++ MYG+ G L EA + ZMP S W +L+ C R
Sbjct: 1160 NVFVGN------------GLISMYGKCGCLVEACRVLDZMPCRDVVS-WNSLVAGCA--R 1204
Query: 227 NDEMFDPI 234
N + D +
Sbjct: 1205 NGQFDDAL 1212
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + ++SW M+ GYA+ G + +++ M+ P+ TLV VLS+C+++ A S
Sbjct: 204 MPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG-VHPDPVTLVGVLSSCANLGAQSV 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G V + + + + NA+INMY +CG++ A VF+ + + ++SW+ +I G
Sbjct: 263 GHEVEFKMQAS-GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+QLF MI +G+ PD F+ ++SACSH GL DQGL FK M Y++ P
Sbjct: 322 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 381
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EA+ I MPI+ + +VWGALL AC+IH+N E+ + + ++
Sbjct: 382 EHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIE 441
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++G + L+SN ++ A+ + +IR ++ LKK GCS++E+
Sbjct: 442 LEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVEL 489
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 10/240 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFG 61
++ V + ++ GY C +AV +F++M +E P N TL+ ++ AC S L G
Sbjct: 105 RKLTVCYNALVSGYVSNSKCSDAVLLFRQM--NEEGVPVNSVTLLGLIPACVSPINLELG 162
Query: 62 QYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H S + +D VS V N I MY+KCG V A ++F+ + K +ISW+ ++SG A
Sbjct: 163 SSLHCSTLKYGFDSDVS--VVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYA 220
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
NG L+L+ M +NGV PD VT + ++S+C++ G G + FK ++ + P
Sbjct: 221 QNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPF 280
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ +++MY R G L +A+A MP E W A++ +H + E+ + +E++
Sbjct: 281 LNN--ALINMYARCGNLTKAQAVFDGMP-ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMI 337
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 16/234 (6%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W T + A+R +A+S++ +M + + PN T L +C+++S G H I
Sbjct: 8 WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 66
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLAMNGCGR 126
T+ V +I+MY K V A +VF N + K + ++ ++SG N
Sbjct: 67 -TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 125
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
A+ LF M GV + VT + LI AC ++ G L + Y C
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL-HCSTLKYGFDSDVSVVNCF 184
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----------NACRIHRNDEM 230
+ MY + G + A+ EMP++ S W A++ N ++RN +M
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSGYAQNGLATNVLELYRNMDM 237
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 230 bits (587), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R VV+WT +I G+ + A+ +F M + P T+V VLSAC+ I AL
Sbjct: 205 VPVRSVVAWTALITGHVQGRQPVRALELFGRM-VLEGHRPTHVTIVGVLSACADIGALDL 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y ++ + S++ +V NA+++MY K G + +A VF + KD +W+T+IS
Sbjct: 264 GRVIHGY-GSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCT 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G G++AL+LF M+ GV P+ VTF++++SACSH GL+++G+ LF M +Y+I P
Sbjct: 323 VQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLL 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GR GLLEEAEA I +M +E + +W +LL+AC + N+ + + +E+V
Sbjct: 383 EHYGCMIDLLGRGGLLEEAEALIADMNVEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVK 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ G + L+ N +A +++W +A ++R ++ + + KK GCSWIE++ ++
Sbjct: 443 REPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAV 494
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 125/259 (48%), Gaps = 43/259 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D++S+T+++ + + EA+S+F + P+ +V LSA S
Sbjct: 73 IPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGH-RPDGFAVVGALSASSGAGDQVV 131
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-- 118
G+ VH I R L +VGNA+I+MY +CG A++VF+ ++ KD ++W +++ G
Sbjct: 132 GRAVHGLI-FRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYI 190
Query: 119 --------------------------LAMNGCGRQ---ALQLFSLMIINGVFPDDVTFIA 149
+ + GRQ AL+LF M++ G P VT +
Sbjct: 191 KCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVG 250
Query: 150 LISACSHGGLVDQGLILF----KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
++SAC+ G +D G ++ K +++ IV ++DMY ++G +E A + +E
Sbjct: 251 VLSACADIGALDLGRVIHGYGSKCNASLNIIVSNA-----LMDMYAKSGHIEMAFSVFQE 305
Query: 206 MPIEAEWSVWGALLNACRI 224
+ + ++ W +++ C +
Sbjct: 306 VQSKDSFT-WTTMISCCTV 323
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV+SWT+++ G G EEA+ +F EM + P++ + VLSAC+ ++ L F
Sbjct: 28 MTDKDVISWTSLVTGCVHNGSYEEALRLFCEM-RIMGIHPDQIVIAAVLSACAELTVLEF 86
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + L S V N++++MY KCG + A +VF+ + +D+I+W+ +I G A
Sbjct: 87 GKQVHANF-LKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYA 145
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG GR++L ++ MI +GV PD +TFI L+ ACSH GLV+ G F++M VY I P
Sbjct: 146 QNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGP 205
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR+G L EA+ + +M ++ + +VW ALL ACR+H N E+ + L
Sbjct: 206 EHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFE 265
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + L+SN ++ A +WE+A K R ++ G+ K+ GCSWIE++ +
Sbjct: 266 LEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKV 317
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 12/146 (8%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
LV NA+++MY K G A VF + KD+ISW+++++G NG +AL+LF M I
Sbjct: 3 LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62
Query: 139 GVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
G+ PD + A++SAC+ +++ G L + + + +V MY +
Sbjct: 63 GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNS------LVSMYAKC 116
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALL 219
G +E+A M I+ + W AL+
Sbjct: 117 GCIEDANKVFDSMEIQ-DVITWTALI 141
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 190/291 (65%), Gaps = 4/291 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D +W+ MI Y +GF EA+++F M++ + + N +L++VLS C+S+++L G+
Sbjct: 292 EKDDGTWSAMIKVYERKGFEVEALNLFALMQR-EGVQSNFPSLISVLSVCASLASLDHGR 350
Query: 63 YVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
VH+ + +++D V V + +I MYVKCGD+ A Q+F+ + KD++ W+++I+G A
Sbjct: 351 QVHAELVKSQFDSDV--FVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQ 408
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G +ALQ+F M +G+ D VTF+ ++SACS+ G V +GL +F++M + Y + P+T+
Sbjct: 409 HGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTE 468
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAGL+ +A I++MP+EA+ +WGALL ACR H N + + ++L+
Sbjct: 469 HYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQL 528
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A RW D ++R +R + K GCSWIEV +
Sbjct: 529 EPKNAGPYILLSNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRV 579
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT M+ GY + G EA ++F +M E N + +L + +
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQM-----PEKNVVSWTVMLGGLIQVRRIDE 158
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + ++ +N++ Y + G + A ++F+ + +++ISW+T+ISG
Sbjct: 159 ARGLFDIMPVKDVVARTNMISG-----YCQEGRLAEARELFDEMPRRNVISWTTMISGYV 213
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
NG A +LF +M ++V++ A++ + GG +++ LF AM
Sbjct: 214 QNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGGRIEEASELFDAM 259
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI GY + G + A +F+ M E NE + +L +
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVM-----PEKNEVSWTAMLMGYTQ------ 245
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + + V +V NA+I + + G+V A QVF+ + KD +WS +I
Sbjct: 246 GGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVY 305
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +AL LF+LM GV + + I+++S C+ +D G
Sbjct: 306 ERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHG 349
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW +I GY + EA F M + NV+S + +
Sbjct: 73 MPERNTVSWNGLISGYVKNRMVSEARKAFDTMPER-----------NVVSWTAMVRGYVQ 121
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V + + + N+V ++ ++ + A +F+++ KD+++ + +ISG
Sbjct: 122 EGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGY 181
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A +LF M V +++ +IS G VD LF+ M E+
Sbjct: 182 CQEGRLAEARELFDEMPRRNV----ISWTTMISGYVQNGQVDVARKLFEVMPEKNEV--- 234
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL---NACRIHRNDEMFDPIRQ 236
+ ++ Y + G +EEA MP++A + +L + + ++FD IR+
Sbjct: 235 --SWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIRE 292
Query: 237 E 237
+
Sbjct: 293 K 293
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 102/242 (42%), Gaps = 28/242 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +VSW +M+ GY + EA +F +M E N + ++S +S
Sbjct: 42 MPDKGIVSWNSMVAGYFQNNRPREARYLFDKM-----PERNTVSWNGLISGYVKNRMVSE 96
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + R N+V A++ YV+ G V A +F + K+++SW+ ++ GL
Sbjct: 97 ARKAFDTMPER------NVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGL 150
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+A LF +M + D V +IS G + + LF M I
Sbjct: 151 IQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELFDEMPRRNVI--- 203
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFD--P 233
+ ++ Y + G ++ A MP + E S W A+L RI E+FD P
Sbjct: 204 --SWTTMISGYVQNGQVDVARKLFEVMPEKNEVS-WTAMLMGYTQGGRIEEASELFDAMP 260
Query: 234 IR 235
++
Sbjct: 261 VK 262
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 28/211 (13%)
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
RY SV+ + N+ I Y + G + A +VF+ + K ++SW+++++G N R+A
Sbjct: 10 RYCTSVA-IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARY 68
Query: 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVD 188
LF M + V++ LIS +V + F M P+ + +V
Sbjct: 69 LFDKMPER----NTVSWNGLISGYVKNRMVSEARKAFDTM-------PERNVVSWTAMVR 117
Query: 189 MYGRAGLLEEAEAFIREMPIE--AEWSV-WGALLNACRIHRNDEMFD--PIRQELVNKKG 243
Y + GL+ EAE +MP + W+V G L+ RI +FD P++ +
Sbjct: 118 GYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNM 177
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRR 274
+S + R +A ++ DE+ R
Sbjct: 178 IS---------GYCQEGRLAEARELFDEMPR 199
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 23/203 (11%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYV 64
+++ + I YA G E A VF EM P++ + ++++ + +Y+
Sbjct: 17 IAYNSQIARYARIGQIESARRVFDEM-------PDKGIVSWNSMVAGYFQNNRPREARYL 69
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R +S N +I+ YVK V A + F+ + ++++SW+ ++ G G
Sbjct: 70 FDKMPERNTVS-----WNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGL 124
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A LF M V V++ ++ +D+ LF M V ++V +T
Sbjct: 125 VSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRIDEARGLFDIMP-VKDVVARTN--- 176
Query: 185 CVVDMYGRAGLLEEAEAFIREMP 207
++ Y + G L EA EMP
Sbjct: 177 -MISGYCQEGRLAEARELFDEMP 198
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 185/289 (64%), Gaps = 4/289 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT MI + G EEA+++F++M+ + EP++ T+V +L+ C++I AL G+
Sbjct: 240 QKDLILWTAMINACVQHGSFEEALTLFRDMQ-LQRVEPDKFTVVTLLTCCANIGALDQGE 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H Y R ++ + ++G A+I MY KCG V ++Q+F + +D +W+ +I GLA N
Sbjct: 299 WIHQYAEGR-NMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + PD +TFI +++AC HGGLVD+G F+AM +Y+I P+ +H
Sbjct: 358 GQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRIEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ G AGLL EAE IR+MP+ + ++GALL AC+ + N EM + + + + +
Sbjct: 418 YSCLVNLLGHAGLLYEAEKLIRDMPVNNDTMPLFGALLTACKAYGNVEMSERLTKRIAKE 477
Query: 242 K-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ LMSN +A A RWE++ ++R ++ +KK GCS IEV
Sbjct: 478 DCSQNPDVNVLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEVK 526
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 95/171 (55%), Gaps = 7/171 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +V W M+ Y G AV++ +EME++ A P+ TLV ++ACS LS
Sbjct: 107 MPQRFLVLWNMMMRCYIRCGRFTAAVALAEEMERSG-ATPDRVTLVTAVTACSRAGDLSL 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + +Y+ + S+ V NA+++MY K G + A+++F + +++ISW+ ++SG A
Sbjct: 166 GRRIRAYMDGVFGFSLP--VANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYA 223
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
+ G +A LF D + + A+I+AC G ++ L LF+ M
Sbjct: 224 VAGQLDKARMLF----YQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQ 270
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +I A RG ++V+ ++ + + + T VL A +
Sbjct: 9 MPLRDC---NVLIRTLARRGSFARVMAVYYDL-RARGLVADSYTYPFVLRAIGVMKLSVE 64
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + + ++++ MY G V A +VF+ + + ++ W+ ++
Sbjct: 65 GRKVHA-AAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYI 123
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A+ L M +G PD VT + ++ACS G + G + M V+
Sbjct: 124 RCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPV 183
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++DMY + G LEEA ++MP
Sbjct: 184 AN--ALLDMYTKNGYLEEAVKMFQQMP 208
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M RD +WT +I G A G +A+ +F+EM+++K +P+ T + VL+AC
Sbjct: 339 MQGRDAAAWTAIICGLATNGQASKALELFEEMQRSK-TKPDGITFIGVLNAC 389
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ +SW+ MI GY + G+ +EA+ VF M++ +E P + L +VL+AC+++ AL
Sbjct: 253 MKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQR-EEIRPRKFVLSSVLAACANLGALDQ 311
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y++ + S ++G A+++MY KCG + +A VF + K++ +W+ +I GL
Sbjct: 312 GRWIHAYVNNNSN-SFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLG 370
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A++LF M P+ +T + ++SAC+H G+VD+GL +F +M VY I P
Sbjct: 371 MHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGM 430
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAGLL EAE + MP+E +VWGALL ACR H + E+ + + + L+
Sbjct: 431 EHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLE 490
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +AL+SN +A A RW+D +R ++ G+K TG S I+ +
Sbjct: 491 LEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFD 539
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 87/172 (50%), Gaps = 12/172 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ KCG + A ++FN + K+ ISWS +I G G ++AL++F++M +
Sbjct: 231 NVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIR 290
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAM---STVYEIVPQTQHYACVVDMYGRAGLLEE 198
P ++++AC++ G +DQG + + S ++ V T +VDMY + G L+
Sbjct: 291 PRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGT----ALVDMYAKCGRLDM 346
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVSV 246
A +M + E W A++ +H E+F ++++ G+++
Sbjct: 347 AWDVFEKME-KKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITL 397
>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 497
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 175/282 (62%), Gaps = 1/282 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ +W++M+ G + CEEA+ VF +M + PNE+ LV+V+SAC+ + +L
Sbjct: 201 MHSRNAATWSSMVTGLVQSDHCEEALRVFSDM-VARGVVPNESILVSVISACAQLRSLEH 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH+Y+ S+S ++ A+++MY KCG + AI+VF + +++ SW+++I+GLA
Sbjct: 260 GVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWNSMITGLA 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG QAL LF M + GV P+D+TFI L+ ACSH GLVD+G LF M + I P
Sbjct: 320 MNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVNDFGIQPVP 379
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GRAGL++EA F++ MP+E +WGAL AC IH E+ + I ++L+
Sbjct: 380 EHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGACNIHGEVELGEEIAKKLIE 439
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+ + L+SN + + RWED +R I+ + K TG
Sbjct: 440 LEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTG 481
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 42/216 (19%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WTTM+ G+A G E A F M + NV+S
Sbjct: 143 DVVTWTTMVAGHARAGDVERARWFFDAMPER-----------NVVS-------------- 177
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
NA++ Y G + A ++F+ + ++ +WS++++GL +
Sbjct: 178 ----------------WNAMLGAYASAGMLSEARKLFDGMHSRNAATWSSMVTGLVQSDH 221
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL++FS M+ GV P++ +++ISAC+ ++ G+ + +
Sbjct: 222 CEEALRVFSDMVARGVVPNESILVSVISACAQLRSLEHGVWVHAYVKRELHGSMSVILAT 281
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+VDMYG+ G + A MP+ +S W +++
Sbjct: 282 AIVDMYGKCGCIHNAIRVFAAMPVRNIYS-WNSMIT 316
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DV+SW T+I GYA+ GF EA+ ++ ME+ E N+ T V+VL ACS AL
Sbjct: 328 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 387
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + L + V ++ +MY KCG + A+ +F + + + W+T+I+
Sbjct: 388 GMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHG 446
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ LF M+ GV PD +TF+ L+SACSH GLVD+G F+ M T Y I P
Sbjct: 447 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSL 506
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDMYGRAG LE A FI+ M ++ + S+WGALL+ACR+H N ++ + L
Sbjct: 507 KHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFE 566
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ VG L+SN +A A +WE ++IR GL+K G S +EV+ +
Sbjct: 567 VEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKV 618
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 7/207 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD++SW ++I Y A+S+FQEM ++ +P+ TL+++ S S + + +
Sbjct: 229 RDLISWNSIIKAYELNEQPLRAISLFQEMRLSR-IQPDCLTLISLASILSQLGDIRACRS 287
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V + + +GNAV+ MY K G V A VFN L D+ISW+T+ISG A NG
Sbjct: 288 VQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNG 347
Query: 124 CGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIVPQT 180
+A++++++M G + + T+++++ ACS G + QG+ L + + +Y V
Sbjct: 348 FASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVV 407
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
A DMYG+ G LE+A + ++P
Sbjct: 408 TSLA---DMYGKCGRLEDALSLFYQIP 431
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 31/212 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI GY + G +EA+++ + + T+V++LSAC+ +
Sbjct: 144 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-----DSVTVVSLLSACTEAGDFNR 198
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY S ++ L S L+ + +VF+ + +D+ISW+++I
Sbjct: 199 GVTIHSY-SIKHGLE-SELLRDCQ--------------KVFDRMYVRDLISWNSIIKAYE 242
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+N +A+ LF M ++ + PD +T I+L S S G + QG L K
Sbjct: 243 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW----- 297
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ VV MY + GL++ A A +P
Sbjct: 298 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 329
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV +W MI GY G E + F + P+ T +VL AC ++ G
Sbjct: 48 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNK 104
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ ++ V ++I++Y + VG A +F+ + +DM SW+ +ISG +G
Sbjct: 105 IHC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSG 163
Query: 124 CGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLIL 166
++AL L NG+ D VT ++L+SAC+ G ++G+ +
Sbjct: 164 NAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTI 202
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL-MIINGVFPDDVTFIALISACS- 155
+ F+ + +D+ +W+ +ISG G + ++ FSL M+ +G+ PD TF +++ AC
Sbjct: 39 MHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT 98
Query: 156 --HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
G + + F M VY A ++ +Y R + A EMP+ +
Sbjct: 99 VIDGNKIHCLALKFGFMWDVYVA-------ASLIHLYSRYKAVGNARILFDEMPVR-DMG 150
Query: 214 VWGALLNA 221
W A+++
Sbjct: 151 SWNAMISG 158
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +SWT+MIGG+ ++G E+A+ F+EM+ EP+ T+++VL+AC+++ AL
Sbjct: 184 MSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAG-VEPDYVTIISVLAACANLGALGL 242
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +++ ++ + D + + N++I+MY +CG + +A QVF + + ++SW+++I G A
Sbjct: 243 GLWINRFV-MKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFA 301
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +AL+ F+LM G PD V+F ++ACSH GLVD+GL F M +I P+
Sbjct: 302 LNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRI 361
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+Y RAG LE+A I MP++ V G+LL ACR H + + + + + L
Sbjct: 362 EHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCE 421
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S + L+SN +A RW+ A+K+R +++ +G+ KK G S IE++ SI
Sbjct: 422 VDPGSDSNYVLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSI 473
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 141/297 (47%), Gaps = 47/297 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISALS 59
P +VSWT+ I + G EA + F M+ PN T + +LSAC+ + L
Sbjct: 50 PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQ-IAGVRPNHITFLTLLSACTDFPLEGLR 108
Query: 60 FGQYVHSYISTRYDLSVSN-LVGNAVINMYVKC--------------------------- 91
FG +H+Y+ + L N +VG A+++MY KC
Sbjct: 109 FGGSIHAYVR-KLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDG 167
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
G+VG AI +F+ ++ +D ISW+++I G GC QAL+ F M + GV PD VT
Sbjct: 168 CMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTI 227
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
I++++AC++ G + GL + + + + + ++DMY R G + A +MP
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMK-QDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMP 286
Query: 208 IEA--EWS--VWGALLNACRIHRND--EMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
+ W+ + G LN H + E F+ +R+E GVS T AL + + +G
Sbjct: 287 KRSLVSWNSMIVGFALNG---HAEEALEFFNLMRKEGFRPDGVSF-TGALTACSHSG 339
>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+VSW ++I Y + +A+ +F M E EPN T++N+L++C+ ++ L G
Sbjct: 527 PQRDLVSWNSLISSYIKNDNAGKALLLFNHM--ISELEPNSVTIINILTSCTQLAHLPLG 584
Query: 62 QYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H+Y + R L + + NA I MY +CG + A ++F L + ++SW+ +I+G
Sbjct: 585 QCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G GR A F+ M+ +G P++V+F +++SACSH GL GL LF +M + I PQ
Sbjct: 645 MHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQL 704
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GR G EA AFI MPIE + S+W ALL++C+I N+++ + I +LV
Sbjct: 705 THYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVE 764
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G F L+SN +A A W + +IR +R GL K G SWI +
Sbjct: 765 LEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVI 812
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW +I GY +EAV +F EM+K PN T+V +L AC + L
Sbjct: 121 MPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG-LTPNSRTVVALLLACGEMLELRL 179
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H Y + VG A++ Y++ D ++ +VF+++ ++++SW+ +I+G
Sbjct: 180 GQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFL 238
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL+L+S M+I G+ D VT + +I AC+ G + G+ L + ++ + ++
Sbjct: 239 NVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LAIKFNLINDL 297
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY G LE + A +P ++ ++W +++++
Sbjct: 298 FILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 7/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M DV+SW TMI +A+ F +A +F M ++ E + N T+V++L+ C S L F
Sbjct: 425 MRGLDVISWNTMISAFAQSMFRAKAFELFLMMCES-EIKFNSYTIVSLLAFCKDGSDLVF 483
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + L ++ + ++ MY+ CGD A +F +D++SW+++IS
Sbjct: 484 GRSIHGF-AIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYI 542
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL LF+ M I+ + P+ VT I ++++C+ + G L A +T E+ +
Sbjct: 543 KNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCL-HAYTTRREVSLEM 600
Query: 181 QHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ MY R G L+ AE + + S W A++ +H
Sbjct: 601 DASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-WNAMITGYGMH 646
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++I + + +S + +ME P+ AT+ VL AC ++A+ G +HS+I
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESLG-ITPDSATMPLVLKACGRLNAIGNGVRIHSFI 86
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
DL VG A+++ Y KCG V A +VF + +D++SW+ +ISG C ++A
Sbjct: 87 RG-LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145
Query: 129 LQLFSLMIINGVFPDDVTFIALISAC 154
+ LF M G+ P+ T +AL+ AC
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLAC 171
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
+P D W +MI Y GF EA+++F +M E+ KE + T+ +LS C+ ++
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKE---DVRTIAIMLSLCNDLNDG 379
Query: 59 S-FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
S +G+ +H++ + + + + +GNA+++MYVK + A VF + D+ISW+T+IS
Sbjct: 380 SIWGRGLHAH-AMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMIS 438
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
A + +A +LF +M + + + T ++L++ C G
Sbjct: 439 AFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDG 478
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSW +I G+ G C +A+ ++ M + + + T++ V+ AC+ L
Sbjct: 222 MLVRNIVSWNAIITGFLNVGDCAKALKLYSSM-LIEGIKFDAVTMLVVIQACAEYGCLRL 280
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ +++L + NA++NMY G + + +FN + D W+++IS
Sbjct: 281 GMQLHQ-LAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYI 339
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
G +A+ LF M + + D T ++S C+
Sbjct: 340 GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 178/290 (61%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
KRD+ +WT ++ GYA+ G E+AV F +M++ + +PNE TL + LS CS I+ L G+
Sbjct: 595 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGR 653
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS ++ + S V +A+++MY KCG V A VF+ L +D +SW+T+I G + +
Sbjct: 654 QLHS-MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQH 712
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL+ F M+ G PD+VTFI ++SACSH GL+++G F ++S +Y I P +H
Sbjct: 713 GQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEH 772
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GRAG E E+FI EM + + +W +L AC++H N E + +L +
Sbjct: 773 YACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELE 832
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN FA W+D +R + G+KK+ GCSW+EVN +
Sbjct: 833 PEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQV 882
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/265 (31%), Positives = 130/265 (49%), Gaps = 15/265 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVSWT +I G+ G+ AV++F EM + + E NE T L ACS L F
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRR-EGVEANEFTYATALKACSMCLDLEF 247
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ D S VG+A++++Y KCG++ +A +VF + ++ +SW+ +++G A
Sbjct: 248 GKQVHAEAIKVGDFS-DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G + L LF M + + T ++ C++ G + G I+ S I +
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVH---SLAIRIGCEL 363
Query: 181 QHY--ACVVDMYGRAGLLEEA-EAFIR-EMPIEAEWSVWGALLNACRIHRN-DEMFDPIR 235
+ C+VDMY + GL +A + F+R E P WS L+ R E+F +R
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423
Query: 236 QELVNKKGVSVGTFALMSNTFAGAD 260
GV F L S A D
Sbjct: 424 HS-----GVIPNQFTLASLVSAATD 443
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 109/197 (55%), Gaps = 3/197 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD++SW ++ G+ + C+ + +F +M + PN T +++L +CSS+S + G+
Sbjct: 495 RDLISWNALLSGFHDNETCDTGLRIFNQM-LAEGFNPNMYTFISILRSCSSLSDVDLGKQ 553
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+ I + L ++ VG A+++MY K + A +FN L +D+ +W+ +++G A +G
Sbjct: 554 VHAQI-VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDG 612
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A++ F M GV P++ T + +S CS +D G L +M+
Sbjct: 613 QGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVA 671
Query: 184 ACVVDMYGRAGLLEEAE 200
+ +VDMY + G +E+AE
Sbjct: 672 SALVDMYAKCGCVEDAE 688
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 8/217 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW+ +I ++G EA VF+ M + PN+ TL +++SA + + L +G+ +
Sbjct: 395 DVVSWSAIITCLDQKGQSREAAEVFKRMRHSG-VIPNQFTLASLVSAATDLGDLYYGESI 453
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + +Y N V NA++ MY+K G V +VF +D+ISW+ ++SG N
Sbjct: 454 HACV-CKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY- 183
L++F+ M+ G P+ TFI+++ +CS VD G + + + + +
Sbjct: 513 CDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK---QVHAQIVKNSLDGNDFV 569
Query: 184 -ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + LE+AE + I+ + W ++
Sbjct: 570 GTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIV 605
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 6/228 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK++ VSW ++ G+A+ G E+ +++F M + E ++ TL VL C++ L
Sbjct: 290 MPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGS-EINFSKFTLSTVLKGCANSGNLRA 348
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VHS ++ R + + +++MY KCG G A++VF + D++SWS +I+ L
Sbjct: 349 GQIVHS-LAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLD 407
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G R+A ++F M +GV P+ T +L+SA + G + G + A Y
Sbjct: 408 QKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI-HACVCKYGFEYDN 466
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
+V MY + G +++ + E + W ALL+ H N+
Sbjct: 467 TVCNALVTMYMKIGSVQDG-CRVFEATTNRDLISWNALLSG--FHDNE 511
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C+S L+ G+ +H + + ++ + + N+++N+Y KCG A +VF + +
Sbjct: 134 MLRTCASKGDLNEGKAIHGQV-IKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPER 192
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS------HGGLVD 161
D++SW+ +I+G G G A+ LF M GV ++ T+ + ACS G V
Sbjct: 193 DVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVH 252
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
I S ++ + +VD+Y + G + AE MP + S W ALLN
Sbjct: 253 AEAIKVGDFSDLFV-------GSALVDLYAKCGEMVLAERVFLCMPKQNAVS-WNALLNG 304
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 178/290 (61%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
KRD+ +WT ++ GYA+ G E+AV F +M++ + +PNE TL + LS CS I+ L G+
Sbjct: 354 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLSGCSRIATLDSGR 412
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS ++ + S V +A+++MY KCG V A VF+ L +D +SW+T+I G + +
Sbjct: 413 QLHS-MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQH 471
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL+ F M+ G PD+VTFI ++SACSH GL+++G F ++S +Y I P +H
Sbjct: 472 GQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEH 531
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GRAG E E+FI EM + + +W +L AC++H N E + +L +
Sbjct: 532 YACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELE 591
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN FA W+D +R + G+KK+ GCSW+EVN +
Sbjct: 592 PEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQV 641
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 112/200 (56%), Gaps = 4/200 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVSWT +I G+ G+ + +F +M + PN T +++L +CSS+S +
Sbjct: 252 IPERDVVSWTALITGFVAEGY-GSGLRIFNQM-LAEGFNPNMYTFISILRSCSSLSDVDL 309
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ I + L ++ VG A+++MY K + A +FN L +D+ +W+ +++G A
Sbjct: 310 GKQVHAQI-VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A++ F M GV P++ T + +S CS +D G L +M+
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDM 427
Query: 181 QHYACVVDMYGRAGLLEEAE 200
+ +VDMY + G +E+AE
Sbjct: 428 FVASALVDMYAKCGCVEDAE 447
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 112/221 (50%), Gaps = 9/221 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ S ++ G+ + C++ + ++ + EPN T +++L C+S L+
Sbjct: 151 MMIENLASRNNLLSGFCDTETCDQGPRILIQL-LVEGFEPNMYTFISILKTCASKGDLNE 209
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + ++ + + N+++N+Y KCG A +VF + +D++SW+ +I+G
Sbjct: 210 GKAIHGQV-IKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFV 268
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G L++F+ M+ G P+ TFI+++ +CS VD G + + + +
Sbjct: 269 AEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGK---QVHAQIVKNSLDG 324
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +VDMY + LE+AE + I+ + W ++
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIV 364
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 101/219 (46%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV W + +EAV +F M T+ N+ +++SA +S+ +
Sbjct: 50 MPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTR-IRLNQFIFASLISAAASLGDNHY 108
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + +Y L+ NA + MY+K V Q F + +++ S + ++SG
Sbjct: 109 GESIHACV-CKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFC 167
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
Q ++ +++ G P+ TFI+++ C+ G +++G + I P +
Sbjct: 168 DTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAI-HGQVIKSGINPDS 226
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +V++Y + G A E+P E + W AL+
Sbjct: 227 HLWNSLVNVYAKCGSANYACKVFGEIP-ERDVVSWTALI 264
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
++++N+YVKC + A QV + +D+ W+ +S ++A+QLF LM +
Sbjct: 28 SSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIR 87
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
+ F +LISA + G G + A Y V MY + +E
Sbjct: 88 LNQFIFASLISAAASLGDNHYGESI-HACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146
Query: 202 FIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261
F + M IE S L C D+ + Q LV ++ TF + T A
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGD 206
Query: 262 WEDANKIRDEIRRMGL 277
+ I ++ + G+
Sbjct: 207 LNEGKAIHGQVIKSGI 222
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 114/282 (40%), Positives = 167/282 (59%), Gaps = 1/282 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV+SW T+I GYA+ G EA+ + ME+ + PN+ T V++L A S + AL
Sbjct: 411 LPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQ 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + L + V +I+MY KCG + A+ +F + + + W+ +IS L
Sbjct: 471 GMKIHGRL-IKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLG 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +ALQLF M +GV D +TF++L+SACSH GLVD+ F M Y I P
Sbjct: 530 IHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNL 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAG LE+A + MPI+A+ S+WG LL ACRIH N E+ L+
Sbjct: 590 KHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLE 649
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+VG + L+SN +A +WE A K+R R GL+K G
Sbjct: 650 VDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 133/253 (52%), Gaps = 14/253 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW ++I Y + A+ F+EM P+ T+V++ S +S
Sbjct: 309 MEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVG-MRPDLLTVVSLASIFGQLSDRRI 367
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ L V ++GNA++NMY K G + A VF L +D+ISW+T+I+G A
Sbjct: 368 GRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYA 427
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 176
NG +A+ +++M + P+ T+++++ A SH G + QG+ + + ++
Sbjct: 428 QNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDV 487
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFD 232
T C++DMYG+ G LE+A + E+P E W A++++ IH + E +F
Sbjct: 488 FVAT----CLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHGHGEKALQLFK 542
Query: 233 PIRQELVNKKGVS 245
+R + V ++
Sbjct: 543 DMRADGVKADHIT 555
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV SW MI G+ + G EA+ V M KT+E + + T+ ++L C+ + +
Sbjct: 208 MPVRDVGSWNAMISGFCQNGNVAEALRVLDRM-KTEEVKMDTVTVSSMLPICAQSNDVVG 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH Y+ ++ L V NA+INMY K G + A +VF+ + +D++SW+++I+
Sbjct: 267 GVLVHLYV-IKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYE 325
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL F M+ G+ PD +T ++L S G L D+ + V+ V +
Sbjct: 326 QNDDPVTALGFFKEMLFVGMRPDLLTVVSLASI--FGQLSDR-----RIGRAVHGFVVRC 378
Query: 181 QHYA-------CVVDMYGRAGLLEEAEAFIREMP 207
+ +V+MY + G ++ A A ++P
Sbjct: 379 RWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP 412
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++++ SW +M+ Y RG +++ E+ P+ T VL AC S L+ G+
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLS---LADGE 167
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H ++ + V ++I++Y + G V +A +VF + +D+ SW+ +ISG N
Sbjct: 168 KMHCWV-LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQN 226
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL++ M V D VT +++ C+ V G +L + +
Sbjct: 227 GNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGG-VLVHLYVIKHGLESDVFV 285
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+++MY + G L++A+ M + + W +++ A +ND DP+
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVR-DLVSWNSIIAA--YEQND---DPV 331
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFP 142
++ +Y GD+ ++ F + K++ SW++++S G R ++ + L+ ++GV P
Sbjct: 89 LVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRP 148
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
D TF ++ AC L D + + +E A ++ +Y R G +E A
Sbjct: 149 DFYTFPPVLKACL--SLADGEKMHCWVLKMGFE--HDVYVAASLIHLYSRFGAVEVAHKV 204
Query: 203 IREMPIEAEWSVWGALLNA 221
+MP+ S W A+++
Sbjct: 205 FVDMPVRDVGS-WNAMISG 222
>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 847
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+VSW ++I Y + +A+ +F M E EPN T++N+L++C+ ++ L G
Sbjct: 527 PQRDLVSWNSLISSYIKNDNAGKALLLFNHM--ISELEPNSVTIINILTSCTQLAHLPLG 584
Query: 62 QYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H+Y + R L + + NA I MY +CG + A ++F L + ++SW+ +I+G
Sbjct: 585 QCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYG 644
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G GR A F+ M+ +G P++V+F +++SACSH GL GL LF +M + I PQ
Sbjct: 645 MHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQL 704
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GR G EA AFI MPIE + S+W ALL++C+I N+++ + I +LV
Sbjct: 705 THYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVE 764
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G F L+SN +A A W + +IR +R GL K G SWI +
Sbjct: 765 LEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVI 812
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 123/221 (55%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW +I GY +EAV +F EM+K PN T+V +L AC + L
Sbjct: 121 MPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAG-LTPNSRTVVALLLACGEMLELRL 179
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H Y + VG A++ Y++ D ++ +VF+++ ++++SW+ +I+G
Sbjct: 180 GQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVSWNAIITGFL 238
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL+L+S M+I G+ D VT + +I AC+ G + G+ L + ++ + ++
Sbjct: 239 NVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQ-LAIKFNLINDL 297
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY G LE + A +P ++ ++W +++++
Sbjct: 298 FILNALLNMYSDNGSLESSWALFNAVP-TSDAALWNSMISS 337
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 7/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M DV+SW TMI +A+ F +A +F M ++ E + N T+V++L+ C S L F
Sbjct: 425 MRGLDVISWNTMISAFAQSMFRAKAFELFLMMCES-EIKFNSYTIVSLLAFCKDGSDLVF 483
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + L ++ + ++ MY+ CGD A +F +D++SW+++IS
Sbjct: 484 GRSIHGF-AIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYI 542
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL LF+ M I+ + P+ VT I ++++C+ + G L A +T E+ +
Sbjct: 543 KNDNAGKALLLFNHM-ISELEPNSVTIINILTSCTQLAHLPLGQCL-HAYTTRREVSLEM 600
Query: 181 QHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ MY R G L+ AE + + S W A++ +H
Sbjct: 601 DASLANAFITMYARCGKLQYAEKIFCTLQTRSIVS-WNAMITGYGMH 646
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++I + + +S + +ME P+ AT+ VL AC ++A+ G +HS I
Sbjct: 28 WNSIIKHHTKLKNDHAILSTYTQMESLG-ITPDSATMPLVLKACGRLNAIGNGVRIHSCI 86
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
DL VG A+++ Y KCG V A +VF + +D++SW+ +ISG C ++A
Sbjct: 87 RG-LDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEA 145
Query: 129 LQLFSLMIINGVFPDDVTFIALISAC 154
+ LF M G+ P+ T +AL+ AC
Sbjct: 146 VLLFVEMKKAGLTPNSRTVVALLLAC 171
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 7/160 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
+P D W +MI Y GF EA+++F +M E+ KE + T+ +LS C+ ++
Sbjct: 323 VPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKE---DVRTIAIMLSLCNDLNDG 379
Query: 59 S-FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
S +G+ +H++ + + + + +GNA+++MYVK + A VF + D+ISW+T+IS
Sbjct: 380 SIWGRGLHAH-AMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMIS 438
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
A + +A +LF +M + + + T ++L++ C G
Sbjct: 439 AFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDG 478
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSW +I G+ G C +A+ ++ M + + + T++ V+ AC+ L
Sbjct: 222 MLVRNIVSWNAIITGFLNVGDCAKALKLYSSM-LIEGIKFDAVTMLVVIQACAEYGCLRL 280
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ +++L + NA++NMY G + + +FN + D W+++IS
Sbjct: 281 GMQLHQ-LAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYI 339
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
G +A+ LF M + + D T ++S C+
Sbjct: 340 GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCN 374
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW TMI GY+ GF ++AV VF+EM+K + PN TLV+VL A S + +L
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG-DIRPNYVTLVSVLPAISRLGSLEL 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y + + + +++G+A+I+MY KCG + AI VF L +++I+WS +I+G A
Sbjct: 293 GEWLHLY-AEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F M GV P DV +I L++ACSHGGLV++G F M +V + P+
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+GLL+EAE FI MPI+ + +W ALL ACR+ N EM + L++
Sbjct: 412 EHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A W + +++R ++ ++K GCS I+++
Sbjct: 472 MVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDID 520
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 128/274 (46%), Gaps = 54/274 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP+R+ SW T+I G++E + A+++F EM + EPN T +VL AC+ +
Sbjct: 85 MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144
Query: 59 SFGQYVHSYISTRY-----DLSVSNLVG-------------------------------- 81
G+ +H ++ +Y + +SNLV
Sbjct: 145 QEGKQIHG-LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203
Query: 82 --------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
N +I+ Y++ GD A +F+ + + ++SW+T+ISG ++NG + A+++F
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYG 191
M + P+ VT ++++ A S G ++ G L L+ S I + ++DMY
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG---IRIDDVLGSALIDMYS 320
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ G++E+A +P E + W A++N IH
Sbjct: 321 KCGIIEKAIHVFERLPRENVIT-WSAMINGFAIH 353
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 33/222 (14%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ--ALQLFSLMIING-VFPDDVTFIA 149
D+ A ++FN + ++ SW+T+I G + + + A+ LF M+ + V P+ TF +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC+ G + +G + ++ Y + +V MY G +++A + IE
Sbjct: 134 VLKACAKTGKIQEGKQI-HGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIE 192
Query: 210 AEWSV-------------WGALLNA------CRIHRNDEMFDPIRQELVNKKGVSVGTFA 250
+ V W +++ C+ R +FD +RQ V + ++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAAR--MLFDKMRQRSVVSWNTMISGYS 250
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L N F ++DA ++ E+++ G + + + V P+I
Sbjct: 251 L--NGF-----FKDAVEVFREMKK-GDIRPNYVTLVSVLPAI 284
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW TMIG + EEA+ +F+EM+ + + T+V + SAC + AL
Sbjct: 424 MLERDLVSWNTMIGALVQVSMFEEAIELFREMQ-NQGIPGDRVTMVGIASACGYLGALDL 482
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V +YI + D+ V +G A+++M+ +CGD A+ VF + +D+ +W+ I +A
Sbjct: 483 AKWVCTYIE-KNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMA 541
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G A++LF+ M+ V PDDV F+AL++ACSHGG VDQG LF +M + I P
Sbjct: 542 MEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHI 601
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VD+ GRAGLLEEA I+ MPIE VWG+LL ACR H+N E+ ++L
Sbjct: 602 VHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQ 661
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
VG L+SN +A A +W D ++R +++ G++K G S IEV
Sbjct: 662 LAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQ 710
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 146/281 (51%), Gaps = 15/281 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT++I GY+ R +EAVS+F +M + EPN T+V V+SAC+ + L
Sbjct: 191 MLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAG-VEPNPVTMVCVISACAKLKDLEL 249
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V SYIS + +S ++ NA+++MY+KCGD+ A Q+F+ A K+++ ++T++S
Sbjct: 250 GKKVCSYIS-ELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ L + M+ G PD VT ++ I+AC+ G + G S Y +
Sbjct: 309 HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVG-----KSSHAYVLRNGL 363
Query: 181 QHY----ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ + ++DMY + G E A MP + + W +L+ + E+ I
Sbjct: 364 EGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVT-WNSLIAGLVRDGDMELAWRIFD 422
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
E++ + VS T M +E+A ++ E++ G+
Sbjct: 423 EMLERDLVSWNT---MIGALVQVSMFEEAIELFREMQNQGI 460
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 126/273 (46%), Gaps = 41/273 (15%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++V + T++ Y + + + + EM + K P++ T+++ ++AC+ + LS G+
Sbjct: 295 KNLVMYNTIMSNYVHHEWASDVLVILDEMLQ-KGPRPDKVTMLSTIAACAQLGDLSVGKS 353
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCG------------------------------- 92
H+Y+ R L + + NA+I+MY+KCG
Sbjct: 354 SHAYV-LRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDG 412
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
D+ +A ++F+ + +D++SW+T+I L +A++LF M G+ D VT + + S
Sbjct: 413 DMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIAS 472
Query: 153 ACSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
AC + G +D L K + T E I Q +VDM+ R G A + M +
Sbjct: 473 ACGYLGALD----LAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRME-K 527
Query: 210 AEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
+ S W A + + N E + E++ +K
Sbjct: 528 RDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQK 560
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 102/188 (54%), Gaps = 7/188 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I GYA G ++A+ ++ +M P++ T +LSACS I ALS G VH +
Sbjct: 98 YNCLIRGYASAGLGDQAILLYVQM-LVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N++I+ Y +CG V + ++F+ + ++++SW+++I+G + ++A
Sbjct: 157 -LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEA 215
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--TQHYACV 186
+ LF M GV P+ VT + +ISAC+ ++ G K S + E+ + T +
Sbjct: 216 VSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGK---KVCSYISELGMELSTIMVNAL 272
Query: 187 VDMYGRAG 194
VDMY + G
Sbjct: 273 VDMYMKCG 280
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 180/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV WT+MI G + G +EAV +F++M+ + ++AT+ V+S+C + AL
Sbjct: 257 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQ-IAGVKADDATIATVVSSCGQMGALDL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+Y+H+Y + L V N++I+MY KCGDV A Q+F+ L +D+ +W+ +I G A
Sbjct: 316 GRYLHAYCDG-HGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFA 374
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG +AL LF+ M + V P++V F+ +++ACSHGGLV+QG F MS VY +VP+
Sbjct: 375 MNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPR 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI++MP+ + VW +LL ACR + + + +
Sbjct: 435 IEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIE 494
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+SN +A RW D N +R + KK GCS+IEV+ I
Sbjct: 495 QLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCI 547
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW T+I GY G +A+ F +M K ++ +E TL+NVL AC+ A+ G
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAK-EQVRLDEVTLLNVLVACARTGAMKVGSLC 218
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + ++ +G+++++MY KCG V A +VFN + ++++ W+++I+G +G
Sbjct: 219 HALVVLN-GFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGR 277
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A+ LF M I GV DD T ++S+C G +D G L A + + +
Sbjct: 278 FKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYL-HAYCDGHGLGKELSVKN 336
Query: 185 CVVDMYGRAGLLEEA 199
++DMY + G + +A
Sbjct: 337 SLIDMYSKCGDVNKA 351
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-- 106
+SA + + +L G H+ +S + L+ + V NA+INMY C A V +
Sbjct: 100 ISAAARVPSLDVGSQFHA-LSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWA 158
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
D++SW+T+I+G G +ALQ F M V D+VT + ++ AC+ G + G L
Sbjct: 159 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVG-SL 217
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
A+ + + +V MY + G++EEA MP E W +++ C
Sbjct: 218 CHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGC 272
>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 678
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 181/297 (60%), Gaps = 18/297 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + +VSW MI Y EAV +F +ME +P+ ++ +VL AC +SAL
Sbjct: 266 LANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMED-HAVDPDAISIASVLPACGDLSALLL 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R L + L+ NA+I+MY KCG + A +VF+ + ++D++SW+++IS
Sbjct: 325 GRRIHEYV-VRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYG 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG GR A+ LFS M G+ PD + F++++SACSH GL+D+G FK M+ +IVP+
Sbjct: 384 MNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRI 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN--------DEMFD 232
+H+ C+VD+ GRAG ++EA FI++MP+E VWGALL+ACR++ N D++F
Sbjct: 444 EHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQ 503
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ G + L+SN +A A RWED +R ++ G+KK G S E++
Sbjct: 504 LCPEQ--------SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELD 552
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 2/159 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK++VV + MI Y +A+ VF+ M +P+ T VL A S L
Sbjct: 97 IPKKNVVFFNVMIRSYVNNHLYSDALLVFKNM-AGHGIDPDHYTYPCVLKASSGSEDLWV 155
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ + R L ++ VGN +I+MY KCG + A +V + + +D++SW+++++G A
Sbjct: 156 GMQIHAAV-VRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCA 214
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
NG AL++ M + G+ PD T +L+ A ++ L
Sbjct: 215 RNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCL 253
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 43/224 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +++ G A G ++A+ V +EME +P+ T+ ++L A
Sbjct: 198 MPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLG-LKPDAGTMASLLPA--------- 247
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
V N ++ +V ++F LA K ++SW+ +I+
Sbjct: 248 -------------------VTNTCLD------NVSFVKEMFMKLANKSLVSWNVMIAVYM 282
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIV 177
N +A+ +F M + V PD ++ +++ AC G L L+L + + +
Sbjct: 283 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC--GDL--SALLLGRRIHEYVVRKRLQ 338
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
P ++DMY + G LE A +M S W ++++A
Sbjct: 339 PNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSMISA 381
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 26/188 (13%)
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ + + +HS I +DL + +G ++ Y CG+ +F+ + K+++ ++ +I
Sbjct: 51 IKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIR 110
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLIL 166
N AL +F M +G+ PD T+ ++ A S H +V GL L
Sbjct: 111 SYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL 170
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR 226
+ ++ MYG+ G L EA + +MP S W +L+ C R
Sbjct: 171 NVFVGN------------GLISMYGKCGCLVEACRVLDQMPCRDVVS-WNSLVAGCA--R 215
Query: 227 NDEMFDPI 234
N + D +
Sbjct: 216 NGQFDDAL 223
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 183/289 (63%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+VSW ++I GYA+ G +F M + +P++ T+VN++SA + + AL
Sbjct: 321 IPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM-FAENVKPDKVTIVNLISAVAEMGALDQ 379
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H ++ + + G+A+I+MY KCG + A +FN + KD+ +W+T+I+G A
Sbjct: 380 GRWIHG-LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA 438
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL+LFS+M P+DVTF+++++ACSH GLVD+GL +F +M Y I P
Sbjct: 439 FHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGV 497
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R+G L +A I +MP+E S+WGA+L+ACR+HRN E+ + EL+
Sbjct: 498 EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK 557
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A RW ++ IR+ + G+KK GCS + V+
Sbjct: 558 LEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 126/258 (48%), Gaps = 39/258 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVS+ TMI G+A+ G + +F +M ++ EP++ T++ +L C +
Sbjct: 189 MSDRNVVSYNTMILGFAKVGNILGILELFHDM-RSHGLEPDDFTMLGLLLLCGQLGETKL 247
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKC---------------------------- 91
G+ VH+ I + SNL+ NA+++MYVKC
Sbjct: 248 GKSVHAQIEK--SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGY 305
Query: 92 ---GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
G++ +A +FN + +D++SW+++ISG A NG LF+ M V PD VT +
Sbjct: 306 AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIV 365
Query: 149 ALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
LISA + G +DQG I A+ + +I + + ++DMY + G +E A ++P
Sbjct: 366 NLISAVAEMGALDQGRWIHGLAVKMLTKI--EAFSGSALIDMYCKCGSIERAFVIFNQIP 423
Query: 208 IEAEWSVWGALLNACRIH 225
E + + W ++ H
Sbjct: 424 -EKDVTTWTTMITGFAFH 440
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++ + TMI G+ E+A ++++ M + P+ T + +L ++ +
Sbjct: 93 PYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNG-TYPDRQTFLYLLQTTKFVAEV--- 146
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + LS + N++I YV G A Q+F+ ++ ++++S++T+I G A
Sbjct: 147 KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 206
Query: 122 NGCGRQALQLFSLMIINGVFPDDVT 146
G L+LF M +G+ PDD T
Sbjct: 207 VGNILGILELFHDMRSHGLEPDDFT 231
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 183/289 (63%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD+VSW ++I GYA+ G +F M + +P++ T+VN++SA + + AL
Sbjct: 256 IPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM-FAENVKPDKVTIVNLISAVAEMGALDQ 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H ++ + + G+A+I+MY KCG + A +FN + KD+ +W+T+I+G A
Sbjct: 315 GRWIHG-LAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL+LFS+M P+DVTF+++++ACSH GLVD+GL +F +M Y I P
Sbjct: 374 FHGFGNKALELFSVMQAE-TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGV 432
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R+G L +A I +MP+E S+WGA+L+ACR+HRN E+ + EL+
Sbjct: 433 EHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLK 492
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A RW ++ IR+ + G+KK GCS + V+
Sbjct: 493 LEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 126/259 (48%), Gaps = 41/259 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVS+ TMI G+A+ G + +F +M ++ EP++ T++ +L C +
Sbjct: 124 MSDRNVVSYNTMILGFAKVGNILGILELFHDM-RSHGLEPDDFTMLGLLLLCGQLGETKL 182
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKC---------------------------- 91
G+ VH+ I + SNL+ NA+++MYVKC
Sbjct: 183 GKSVHAQIEK--SIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGY 240
Query: 92 ---GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
G++ +A +FN + +D++SW+++ISG A NG LF+ M V PD VT +
Sbjct: 241 AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIV 300
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREM 206
LISA + G +DQG + +++ + + + + ++DMY + G +E A ++
Sbjct: 301 NLISAVAEMGALDQGRWIH---GLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQI 357
Query: 207 PIEAEWSVWGALLNACRIH 225
P E + + W ++ H
Sbjct: 358 P-EKDVTTWTTMITGFAFH 375
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 6/145 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++ + TMI G+ E+A ++++ M + P+ T + +L ++ +
Sbjct: 28 PYPNLYIFNTMILGFPFSN--EKAFTIYRSMLQNG-TYPDRQTFLYLLQTTKFVAEV--- 81
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + LS + N++I YV G A Q+F+ ++ ++++S++T+I G A
Sbjct: 82 KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAK 141
Query: 122 NGCGRQALQLFSLMIINGVFPDDVT 146
G L+LF M +G+ PDD T
Sbjct: 142 VGNILGILELFHDMRSHGLEPDDFT 166
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWTTMI GY+ EA+ +F ME+ K PN TL ++ A +++ AL
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISG 118
GQ V +Y R + NL V NAV+ MY KCG + +A +VFN + + +++ SW+++I G
Sbjct: 235 GQRVEAY--ARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMG 292
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA++G + L+L+ M+ G PDDVTF+ L+ AC+HGG+V++G +FK+M+T + I+P
Sbjct: 293 LAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIP 352
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+ GRAG L EA I+ MP++ + +WGALL AC H N E+ + + L
Sbjct: 353 KLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESL 412
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + ++SN +A A +W+ K+R ++ + K G S+IE
Sbjct: 413 FALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIE 461
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 12/209 (5%)
Query: 2 PKRDVVSWTTMIGGYAERG-FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
PK + + +I Y+ + S++ +M PN+ T + SAC+S+S+ S
Sbjct: 43 PKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQM-LLHSFLPNQHTFNFLFSACTSLSSPSL 101
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
GQ +H+ +I + ++ + A+++MY K G + +A ++F+ + + + +W+ +++G
Sbjct: 102 GQMLHTHFIKSGFEPDL--FAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGH 159
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A G AL+LF LM V V++ +IS S + L LF M ++P
Sbjct: 160 ARFGDMDVALELFRLMPSRNV----VSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPN 215
Query: 180 TQHYACVVDMYGRAGLLE---EAEAFIRE 205
A + + G LE EA+ R+
Sbjct: 216 AVTLASIFPAFANLGALEIGQRVEAYARK 244
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 178/290 (61%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD +SW ++I G + G ++ + F+ M K K +P + + +V+ AC+ ++AL+
Sbjct: 260 LSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEK-VKPMQVSFSSVIPACAHLTALNL 318
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118
G+ +H+YI R + + +++++MY KCG++ +A +FN + +DM+SW+ +I G
Sbjct: 319 GKQLHAYI-IRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMG 377
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G A+ LF M+++GV P V F+A+++ACSH GLVD+G F +M + + P
Sbjct: 378 CAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAP 437
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HYA V D+ GRAG LEEA FI M E SVW LL ACR H+N E+ + + ++
Sbjct: 438 GLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKI 497
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++G +MSN ++ A RW DA K+R +R+ GLKK CSWIEV
Sbjct: 498 LLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEV 547
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW T+I G A+ G EEA+++ +EM K + P+ TL ++L + + ++
Sbjct: 159 MPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGK-ENLRPDSFTLSSILPIFTEHANVTK 217
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R+ +G+++I+MY KC V +++ F++L+ +D ISW+++I+G
Sbjct: 218 GKEIHGY-AIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCV 276
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG Q L F M+ V P V+F ++I AC+H ++ G L + + +
Sbjct: 277 QNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLH---AYIIRLGFDD 333
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPI-EAEWSVWGALLNACRIH 225
+ + ++DMY + G ++ A ++ + + + W A++ C +H
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMH 381
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 24/179 (13%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
++W +I YA G +++ F + ++ P+ ++L A + + Q +H+
Sbjct: 42 LAWICIIKCYASHGLLRHSLASFNLL-RSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCG----------------------DVGIAIQVFNML 104
+ R NA++NMY K + ++F+ +
Sbjct: 101 AV-IRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+D++SW+TVI+G A NG +AL + M + PD T +++ + V +G
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKG 218
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 183/288 (63%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT M+ GYA+ +A+ VF+ + + + E +E TLV V+SAC+ + A +
Sbjct: 202 LPVKDMVTWTAMVTGYAQNAMPMDALEVFRRL-RDEGVEIDEVTLVGVISACAQLGASKY 260
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++ S+ + + + LVG+A+I+MY KCG+V A VF + +++ S+S++I G
Sbjct: 261 ANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGF 320
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R A++LF M+ GV P+ VTF+ +++ACSH GLVDQG LF +M Y + P
Sbjct: 321 AIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPT 380
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ YAC+ D+ RAG LE+A + MP+E++ +VWGALL A +H N ++ + + L
Sbjct: 381 AELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLF 440
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++G + L+SNT+A A RW+D +K+R +R LKK G SW+E
Sbjct: 441 ELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVE 488
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 104/231 (45%), Gaps = 33/231 (14%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
+WT +I YA RG +A+S + M K + P T + SAC+++ + G +H+
Sbjct: 76 AWTALIRAYALRGPLSQALSFYSSMRK-RRVSPISFTFSALFSACAAVRHSALGAQLHAQ 134
Query: 68 ISTRYDLSVSNLVGNAVINMYVKC-------------------------------GDVGI 96
S V NAVI+MYVKC GD+
Sbjct: 135 TLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRA 194
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A +F+ L KDM++W+ +++G A N AL++F + GV D+VT + +ISAC+
Sbjct: 195 ARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQ 254
Query: 157 GGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
G I A S+ + + + ++DMY + G +EEA + M
Sbjct: 255 LGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGM 305
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 22/190 (11%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-- 99
E +V +L CSS L+ + VH+ I + +L S+ V ++ + V +
Sbjct: 8 EWEVVRILERCSS---LNQAKEVHAQIYIK-NLQQSSYVLTKLLRLVTALPHVPLHSYPR 63
Query: 100 -VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS--- 155
+F+ L + +W+ +I A+ G QAL +S M V P TF AL SAC+
Sbjct: 64 LLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVR 123
Query: 156 HGGL----VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
H L Q L+L S +Y V+DMY + G L A EMP E +
Sbjct: 124 HSALGAQLHAQTLLLGGFSSDLYV-------NNAVIDMYVKCGSLRCARMVFDEMP-ERD 175
Query: 212 WSVWGALLNA 221
W L+ A
Sbjct: 176 VISWTGLIVA 185
>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
Length = 767
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 189/288 (65%), Gaps = 9/288 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W+ +I Y+ G ++A+ ++ +M T+ +PN ATLV+V+S+C++++AL G+
Sbjct: 484 KDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGVKPNSATLVSVISSCANLAALEHGEL 542
Query: 64 VHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+HS++ DLS+ A+++MY+KCG +GIA ++F+ + +D+++W+ +ISG
Sbjct: 543 IHSHVKDVGLECDLSICT----ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G QAL+LFS+M V P+ +TF+A++SAC H GLVD+G LF M Y + P
Sbjct: 599 MHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNL 657
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ G++G L+EAE + MPIE + +WG LL AC++H N EM + ++
Sbjct: 658 KHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA 717
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + LMSN++ A++W + K+RD ++ G++K G S I++
Sbjct: 718 SDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 127/229 (55%), Gaps = 9/229 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISAL 58
+ +RD SW++M+ Y + G + + +++EM+ E E + +L++++S+CS + L
Sbjct: 377 LHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRL 436
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
GQ H Y S ++ ++ V NA+I+MY +CG+ +A ++F M+ KD+++WS +IS
Sbjct: 437 RLGQSAHCY-SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+ G + AL L+ M+ GV P+ T +++IS+C++ ++ G ++ S V ++
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGL 552
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ C +VDMY + G L A M +E + W +++ +H
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+VSWT++IG Y G E+AV +F ME++ +P+E + +L+ + + +
Sbjct: 276 LPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRG 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I R + S L+GNA+I+MY KC V IA VF ML +D SWS+++
Sbjct: 335 GKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393
Query: 121 MNGCGRQALQLFSLM 135
G + L+L+ M
Sbjct: 394 KAGLDLKCLELYREM 408
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE---AEPNEATLVNVLSACSSISA 57
MP+RDVV+WT +I G G C E +S M ++ A PN T+ + L AC +
Sbjct: 171 MPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGE 230
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
LS G +H + + + V +++ +MY KC A +F L KD++SW+++I
Sbjct: 231 LSVGTCLHGF-GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIG 289
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +A++LF M +G+ PD+V L++ + V G A+
Sbjct: 290 AYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D W +++ +S + M + A P+ T V SA + + AL G
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVG 126
Query: 62 QYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
VH+Y S R+ L S V ++++ MY +CG V A+++F+ + +D+++W+ VISG
Sbjct: 127 AAVHAY-SVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185
Query: 119 LAMNGCGRQALQLFSLMIIN----GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
NG + L M+ + G P+ T + + AC G + G L +
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHG-----F 240
Query: 175 EIVPQTQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 223
+ H VV MY + E+A E+P E + W +L+ A CR
Sbjct: 241 GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYCR 293
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M +RDVV+W MI GY G +A+ +F ME+ +PN T + +LSAC
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGN-VKPNSLTFLAILSAC 632
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 180/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+ MI G EA++VF M + E +P++ TLV+V+SACS++SAL
Sbjct: 361 MPDKDNVSWSAMIAGCVHNNQSSEALNVFDSM-RAHEIKPDDVTLVSVISACSNLSALEQ 419
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +Y +++ ++G ++I+MY+KCG + A++VF+ML K W+ VI GLA
Sbjct: 420 GKLVHEYIR-KYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLA 478
Query: 121 MNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG ++L +FS M G P+++TF ++SAC HGGLV++G FK M Y+IVP
Sbjct: 479 MNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPN 538
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG + EAE I+ MP+ + WGALL AC H + E+ + + ++LV
Sbjct: 539 IRHYGCMVDLLGRAGYVREAEDMIQSMPMSPDVPAWGALLGACWKHGDSEVGERVGKKLV 598
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
G ++SN +A W+ +R +++ + K GCS +E + S
Sbjct: 599 KLDPDHDGFQTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVEPSHS 650
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 118/256 (46%), Gaps = 51/256 (19%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFG 61
RD +WT M+ + EA++VF +M + E P +EA +V+V++AC+ + G
Sbjct: 231 HRDAFTWTAMVSCFERNDLFMEALAVFSDMRE--EGWPVDEAVMVSVVAACAKSGVIQNG 288
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ H + R L V N +I+MY C DV A ++F+ D SW+++ISG
Sbjct: 289 EVCHGLV-VRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLK 347
Query: 122 N--------------------------GC-----GRQALQLFSLMIINGVFPDDVTFIAL 150
N GC +AL +F M + + PDDVT +++
Sbjct: 348 NGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSV 407
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEA-EAFI 203
ISACS+ ++QG + V+E + + Q+ +V DMY + G +E A E F
Sbjct: 408 ISACSNLSALEQGKL-------VHEYIRKYQYNITIVLGTSLIDMYMKCGCMEAALEVF- 459
Query: 204 REMPIEAEWSVWGALL 219
+M E W A++
Sbjct: 460 -DMLEEKGTPCWNAVI 474
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
T++ +GF ++ M A P+ T + +AC++ + G VHS+ S
Sbjct: 78 NTLLKAALRQGFPHLCFPLYASMP----AAPDTYTHPLLAAACAARGDVREGLQVHSH-S 132
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
++ S + + NA+++MY CG V A +VF+ D +SW+T+++ +G QA+
Sbjct: 133 VKHGFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAV 192
Query: 130 QLFSLM 135
++F+ M
Sbjct: 193 KVFTRM 198
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 104/280 (37%), Gaps = 78/280 (27%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D VSW T++ Y G E+AV VF M + A +
Sbjct: 168 PVWDAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMV----------------- 210
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++ + G V A VF+ ++D +W+ ++S
Sbjct: 211 ------------------------ALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFER 246
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----------------- 164
N +AL +FS M G D+ +++++AC+ G++ G
Sbjct: 247 NDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNV 306
Query: 165 --ILFKAMSTVYEIVPQTQ---------HYA--CVVDMYGRAGLLEEAEAFIREMPIEAE 211
+L S+ ++V + H++ ++ Y + G +E+A+A MP +
Sbjct: 307 QNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDN 366
Query: 212 WSVWGALLNACRIHRNDE-----MFDPIRQELVNKKGVSV 246
S W A++ C +H N +FD +R + V++
Sbjct: 367 VS-WSAMIAGC-VHNNQSSEALNVFDSMRAHEIKPDDVTL 404
>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
Length = 897
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 189/288 (65%), Gaps = 9/288 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W+ +I Y+ G ++A+ ++ +M T+ +PN ATLV+V+S+C++++AL G+
Sbjct: 484 KDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGVKPNSATLVSVISSCANLAALEHGEL 542
Query: 64 VHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+HS++ DLS+ A+++MY+KCG +GIA ++F+ + +D+++W+ +ISG
Sbjct: 543 IHSHVKDVGLECDLSICT----ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G QAL+LFS+M V P+ +TF+A++SAC H GLVD+G LF M Y + P
Sbjct: 599 MHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNL 657
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ G++G L+EAE + MPIE + +WG LL AC++H N EM + ++
Sbjct: 658 KHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA 717
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + LMSN++ A++W + K+RD ++ G++K G S I++
Sbjct: 718 SDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 127/229 (55%), Gaps = 9/229 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISAL 58
+ +RD SW++M+ Y + G + + +++EM+ E E + +L++++S+CS + L
Sbjct: 377 LHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRL 436
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
GQ H Y S ++ ++ V NA+I+MY +CG+ +A ++F M+ KD+++WS +IS
Sbjct: 437 RLGQSAHCY-SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+ G + AL L+ M+ GV P+ T +++IS+C++ ++ G ++ S V ++
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGL 552
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ C +VDMY + G L A M +E + W +++ +H
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+VSWT++IG Y G E+AV +F ME++ +P+E + +L+ + + +
Sbjct: 276 LPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRG 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I R + S L+GNA+I+MY KC V IA VF ML +D SWS+++
Sbjct: 335 GKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393
Query: 121 MNGCGRQALQLFSLM 135
G + L+L+ M
Sbjct: 394 KAGLDLKCLELYREM 408
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE---AEPNEATLVNVLSACSSISA 57
MP+RDVV+WT +I G G C E +S M ++ A PN T+ + L AC +
Sbjct: 171 MPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGE 230
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
LS G +H + + + V +++ +MY KC A +F L KD++SW+++I
Sbjct: 231 LSVGTCLHGF-GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIG 289
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +A++LF M +G+ PD+V L++ + V G A+
Sbjct: 290 AYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D W +++ +S + M + A P+ T V SA + + AL G
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVG 126
Query: 62 QYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
VH+Y S R+ L S V ++++ MY +CG V A+++F+ + +D+++W+ VISG
Sbjct: 127 AAVHAY-SVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185
Query: 119 LAMNGCGRQALQLFSLMIIN----GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
NG + L M+ + G P+ T + + AC G + G L +
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHG-----F 240
Query: 175 EIVPQTQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 223
+ H VV MY + E+A E+P E + W +L+ A CR
Sbjct: 241 GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYCR 293
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W MI GY G +A+ +F ME+ +PN T + +LSAC +
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGN-VKPNSLTFLAILSACCHAGLVDK 640
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + + + Y L + ++++ K G + A V + + + D W T++
Sbjct: 641 GRELFTRME-EYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGAC 699
Query: 120 AMN 122
M+
Sbjct: 700 KMH 702
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 180/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VV WT+MI G + G +EAV +F++M+ + ++AT+ V+S+C + AL
Sbjct: 169 MPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQ-IAGVKADDATIATVVSSCGQMGALDL 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+Y+H+Y + L V N++I+MY KCGDV A Q+F+ L +D+ +W+ +I G A
Sbjct: 228 GRYLHAYCDG-HGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFA 286
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG +AL LF+ M + V P++V F+ +++ACSHGGLV+QG F MS VY +VP+
Sbjct: 287 MNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPR 346
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI++MP+ + VW +LL ACR + + + +
Sbjct: 347 IEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIE 406
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+SN +A RW D N +R + KK GCS+IEV+ I
Sbjct: 407 QLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCI 459
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 108/195 (55%), Gaps = 3/195 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW T+I GY G +A+ F +M K ++ +E TL+NVL AC+ A+ G
Sbjct: 72 DVVSWNTIIAGYIRGGMPNKALQSFHQMAK-EQVRLDEVTLLNVLVACARTGAMKVGSLC 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + ++ +G+++++MY KCG V A +VFN + ++++ W+++I+G +G
Sbjct: 131 HALVVLN-GFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGR 189
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A+ LF M I GV DD T ++S+C G +D G L A + + +
Sbjct: 190 FKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYL-HAYCDGHGLGKELSVKN 248
Query: 185 CVVDMYGRAGLLEEA 199
++DMY + G + +A
Sbjct: 249 SLIDMYSKCGDVNKA 263
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-- 106
+SA + + +L G H+ +S + L+ + V NA+INMY C A V +
Sbjct: 12 ISAAARVPSLDVGSQFHA-LSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWA 70
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
D++SW+T+I+G G +ALQ F M V D+VT + ++ AC+ G + G L
Sbjct: 71 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVG-SL 129
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
A+ + + +V MY + G++EEA MP E W +++ C
Sbjct: 130 CHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP-ERNVVCWTSMIAGC 184
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 230 bits (586), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 181/295 (61%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW+TMI G A G E+ F+E+++ + PNE +L VLSACS + F
Sbjct: 221 MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEF 279
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-MISWSTVISG 118
G+ +H ++ Y VS V NA+I+MY +CG+V +A VF + K ++SW+++I+G
Sbjct: 280 GKILHGFVEKAGYSWIVS--VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAG 337
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAM+G G +A++LF+ M GV PD ++FI+L+ ACSH GL+++G F M VY I P
Sbjct: 338 LAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEP 397
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+YGR+G L++A FI +MPI VW LL AC H N E+ + ++Q L
Sbjct: 398 EIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 457
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D IR + +KK T S +EV +++
Sbjct: 458 NELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 512
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+IG Y G E A VF EM +PN V++AC + ++ + + +
Sbjct: 137 TTLIGMYGGCGCVEFARKVFDEMH-----QPNLVAWNAVITACFRGNDVAGAREIFDKML 191
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R S N ++ Y+K G++ A ++F+ + ++D +SWST+I G+A NG ++
Sbjct: 192 VRNHTS-----WNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 246
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHYACVVD 188
F + G+ P++V+ ++SACS G + G IL + Y + + ++D
Sbjct: 247 LYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN--ALID 304
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGV 244
MY R G + A M + W +++ +H E +F+ + V G+
Sbjct: 305 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 364
Query: 245 S 245
S
Sbjct: 365 S 365
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+ D + T++ GY+E +V+VF EM + P+ + V+ A + +L
Sbjct: 57 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 116
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + ++ L VG +I MY CG V A +VF+ + ++++W+ VI+
Sbjct: 117 GFQMHCQ-ALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACF 175
Query: 121 MNGCGRQALQLFSLMIING----------------------VFP-----DDVTFIALISA 153
A ++F M++ +F DDV++ +I
Sbjct: 176 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 235
Query: 154 CSHGGLVDQGLILFKAM 170
+H G ++ + F+ +
Sbjct: 236 IAHNGSFNESFLYFREL 252
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 229 bits (585), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+TMI GYA+ G E++ +F+ M+ T + PNE TLV V+SAC+ + +
Sbjct: 311 MSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEVTLVGVISACAQLGSDEL 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + +Y + L +++ +G+A+I+MY +CG VG A VF+ + K +I+W+++I GLA
Sbjct: 370 VEQIGNYAENQR-LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLA 428
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG A+ L+ M NGV P+++TF+AL++AC+H GLVDQG+ F+ M + + PQ
Sbjct: 429 MNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQV 488
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ ++G L EA FI +M +E +W LL++CR H + E+ ++L+
Sbjct: 489 EHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLA 548
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A A W DA +IRD +R ++K + SWI+++
Sbjct: 549 MEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 597
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R SW +MI YA G EA+++F M ++ A PN T+ +V S C+ L
Sbjct: 211 MERRTSASWNSMIACYAHGGEFREALTLFDRM-LSEGARPNAITITSVFSICAKSGDLDT 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V I D + +V A++ MYVKC + A + F+ ++ +D+++WST+I+G A
Sbjct: 270 GKRVRDLIGE--DDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYA 327
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + +ISAC+ G L+ + +P T
Sbjct: 328 QNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG--SDELVEQIGNYAENQRLPLT 385
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY R G + A + M
Sbjct: 386 SYLGSALIDMYTRCGHVGRARSVFSRM 412
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 41/159 (25%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV T ++ YA+ G E AVSVF EM K+ P
Sbjct: 153 DVFVLTALVDFYAKNGDMESAVSVFDEM-PVKDPIPI----------------------- 188
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
N +I Y K GDV A ++F+ + + SW+++I+ A G
Sbjct: 189 -----------------NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGE 231
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
R+AL LF M+ G P+ +T ++ S C+ G +D G
Sbjct: 232 FREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTG 270
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 183/289 (63%), Gaps = 5/289 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT MI Y + G EA+S+F++M+ + EP+ T+V +L+ C+++ AL GQ
Sbjct: 240 EKDLIMWTAMINAYVQHGCFIEALSLFRDMQ-MHQIEPDRFTVVTLLTCCANLGALDQGQ 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + R ++ + ++G A+I+MY KCG V +++VF + +D +W+ +I GLA N
Sbjct: 299 LIHQFAEGR-NMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + PD VTFI ++SAC HGGLVD+G F+AM VY I P+ +H
Sbjct: 358 GQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ GRAG L+EAE I+ +PI + ++GAL+ AC+ N +M + + + + K
Sbjct: 418 YSCLVNLLGRAGQLDEAEKLIKSIPINKDAMPLFGALITACKAQGNVKMSERLTKR-IGK 476
Query: 242 KGVSVGTF-ALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+G + LMSN +A A RWED ++R ++ +KK GCS IEV
Sbjct: 477 QGYQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVK 525
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 42/239 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VV W M+ Y G EAV++ +EME+ + P+ TL+ L+ACS LS
Sbjct: 107 MPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGR-LTPDRVTLLTALTACSRAGDLSL 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVK------------------------------ 90
G+ +H+Y+ S+ V NA+++MYVK
Sbjct: 166 GRKIHAYMDGVTGFSLP--VANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYA 223
Query: 91 -CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
G V A +F+ KD+I W+ +I+ +GC +AL LF M ++ + PD T +
Sbjct: 224 FAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVT 283
Query: 150 LISACSHGGLVDQGLILFK---AMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIR 204
L++ C++ G +DQG ++ + + + V T ++DMY + G +E++ E F R
Sbjct: 284 LLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGT----ALIDMYAKCGHVEKSVEVFER 338
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+++++MY G + A +VF+ + + ++ W+ ++ G +A+ L M
Sbjct: 83 TASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEMERGR 142
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI-VPQTQHYACVVDMYGRAGLLEE 198
+ PD VT + ++ACS G + G + M V +P ++DMY + G LEE
Sbjct: 143 LTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN---ALLDMYVKNGCLEE 199
Query: 199 AEAFIREMP 207
A +MP
Sbjct: 200 AVNLFEKMP 208
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M RD +WT +I G A G A+ +F++ME++ EA+P+ T + VLSAC
Sbjct: 339 MEGRDTKAWTAIICGLATNGQAGRALELFEDMERS-EAKPDSVTFIGVLSAC 389
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VV WT+MI GY + G +EAV++F++M+ T + ++ T+ V+S+C+ + AL
Sbjct: 257 MHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITG-MKVDDGTIATVVSSCAQMGALDL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+YVH+Y + L V N++I+MY KCGD+ A ++F L +D+ SW+ +I G
Sbjct: 316 GRYVHAYCDV-HGLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFT 374
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG +AL LF+ M G V P++VTF+ ++++CSHGGLV+QG F+ MS VY++ P+
Sbjct: 375 VNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGLVEQGFHYFQRMSMVYKLAPR 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI+ MPI + VW +LL ACR + + + + ++
Sbjct: 435 IEHYGCMVDLLGRAKLLTEAEQFIKNMPIAPDVVVWRSLLFACRACGEVGLAEFVAERIL 494
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L+SN +A RW D N++R + + K+ GCS+IEV+
Sbjct: 495 ELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSRMSKQPGCSFIEVD 544
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 106/196 (54%), Gaps = 3/196 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW T+I GY G +A+ F +M K ++ ++ TL+N L A + + G+
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVK-EQVTLDDVTLLNALVASAKAGKVKVGRLC 218
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + ++ +G+++I+MY KCG V A +VF+ + ++++ W+++ISG G
Sbjct: 219 HSLVVVN-GAGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGK 277
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A+ LF M I G+ DD T ++S+C+ G +D G + A V+ + +
Sbjct: 278 FKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYV-HAYCDVHGLGKELSVKN 336
Query: 185 CVVDMYGRAGLLEEAE 200
++DMY + G + +A
Sbjct: 337 SLIDMYSKCGDINKAH 352
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 6/212 (2%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK- 107
SA S + ++S G +HS +S + L V N++INMY C A QV +
Sbjct: 100 FSATSRLPSVSVGAQLHS-LSVKLGLVSDTFVLNSLINMYSSCSYPATARQVLDSAPQGA 158
Query: 108 -DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
D +SW+T+ISG G +ALQ F M+ V DDVT + + A + G V G L
Sbjct: 159 CDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGR-L 217
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIH 225
++ V + ++ MY + GL+E+A M E W ++++ ++
Sbjct: 218 CHSLVVVNGAGINCYMGSSLISMYAKCGLVEDARKVFHGMH-ERNVVCWTSMISGYTQLG 276
Query: 226 RNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257
+ E + R + V GT A + ++ A
Sbjct: 277 KFKEAVNLFRDMQITGMKVDDGTIATVVSSCA 308
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 181/295 (61%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW+TMI G A G E+ F+E+++ + PNE +L VLSACS + F
Sbjct: 229 MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEF 287
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-MISWSTVISG 118
G+ +H ++ Y VS V NA+I+MY +CG+V +A VF + K ++SW+++I+G
Sbjct: 288 GKILHGFVEKAGYSWIVS--VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAG 345
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAM+G G +A++LF+ M GV PD ++FI+L+ ACSH GL+++G F M VY I P
Sbjct: 346 LAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEP 405
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+YGR+G L++A FI +MPI VW LL AC H N E+ + ++Q L
Sbjct: 406 EIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 465
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D IR + +KK T S +EV +++
Sbjct: 466 NELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 520
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+IG Y G E A VF EM +PN V++AC + ++ + + +
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMH-----QPNLVAWNAVITACFRGNDVAGAREIFDKML 199
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R S N ++ Y+K G++ A ++F+ + ++D +SWST+I G+A NG ++
Sbjct: 200 VRNHTS-----WNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 254
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHYACVVD 188
F + G+ P++V+ ++SACS G + G IL + Y + + ++D
Sbjct: 255 LYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN--ALID 312
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGV 244
MY R G + A M + W +++ +H E +F+ + V G+
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 245 S 245
S
Sbjct: 373 S 373
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+ D + T++ GY+E +V+VF EM + P+ + V+ A + +L
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + ++ L VG +I MY CG V A +VF+ + ++++W+ VI+
Sbjct: 125 GFQMHCQ-ALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACF 183
Query: 121 MNGCGRQALQLFSLMIING----------------------VFP-----DDVTFIALISA 153
A ++F M++ +F DDV++ +I
Sbjct: 184 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243
Query: 154 CSHGGLVDQGLILFKAM 170
+H G ++ + F+ +
Sbjct: 244 IAHNGSFNESFLYFREL 260
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DV+SW T+I GYA+ GF EA+ ++ ME+ E N+ T V+VL ACS AL
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + L + V ++ +MY KCG + A+ +F + + + W+T+I+
Sbjct: 470 GMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHG 528
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ LF M+ GV PD +TF+ L+SACSH GLVD+G F+ M T Y I P
Sbjct: 529 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSL 588
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDMYGRAG LE A FI+ M ++ + S+WGALL+ACR+H N ++ + L
Sbjct: 589 KHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFE 648
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ VG L+SN +A A +WE ++IR GL+K G S +EV+ +
Sbjct: 649 VEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKV 700
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 8/244 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW ++I Y A+S+FQEM ++ +P+ TL+++ S S + +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR-IQPDCLTLISLASILSQLGDIRA 366
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + + +GNAV+ MY K G V A VFN L D+ISW+T+ISG A
Sbjct: 367 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYA 426
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIV 177
NG +A++++++M G + + T+++++ ACS G + QG+ L + + +Y V
Sbjct: 427 QNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV 486
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
A DMYG+ G LE+A + ++P W L+ H + E + +E
Sbjct: 487 FVVTSLA---DMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 238 LVNK 241
++++
Sbjct: 543 MLDE 546
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI GY + G +EA+++ + + T+V++LSAC+ +
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-----DSVTVVSLLSACTEAGDFNR 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY S ++ L V N +I++Y + G + +VF+ + +D+ISW+++I
Sbjct: 266 GVTIHSY-SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+N +A+ LF M ++ + PD +T I+L S S G + QG L K
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW----- 379
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ VV MY + GL++ A A +P
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDV +W MI GY G E + F + P+ T +VL AC ++
Sbjct: 112 IQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID--- 168
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ ++ V ++I++Y + VG A +F+ + +DM SW+ +ISG
Sbjct: 169 GNKIHC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227
Query: 121 MNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G ++AL L NG+ D VT ++L+SAC+ G ++G+ + + S + + +
Sbjct: 228 QSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESE 281
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D+Y G L + + M + S W +++ A
Sbjct: 282 LFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS-WNSIIKA 322
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL-MIINGVFP 142
++N+Y G+V +A F+ + +D+ +W+ +ISG G + ++ FSL M+ +G+ P
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 143 DDVTFIALISACS---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
D TF +++ AC G + + F M VY A ++ +Y R + A
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVA-------ASLIHLYSRYKAVGNA 204
Query: 200 EAFIREMPIEAEWSVWGALLNA 221
EMP+ + W A+++
Sbjct: 205 RILFDEMPVR-DMGSWNAMISG 225
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 184/289 (63%), Gaps = 4/289 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D++ WT+MI + G EEA+ +F++M+ + EP++ T+V +L+ C++I AL G+
Sbjct: 240 QKDLILWTSMINACVQHGSFEEALILFRDMQ-LQRVEPDKFTVVTLLTCCANIGALDQGE 298
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H Y +R ++ + ++G A+I MY KCG V ++Q+F + KD +W+ +I GLA N
Sbjct: 299 WIHQYAESR-NMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATN 357
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL+LF M + PD +TFI ++SAC HGGLVD+G F+AM VY I P+ +H
Sbjct: 358 GQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEH 417
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y+C+V++ G AGLL EAE I +MP+ + ++GALL AC+ + N EM + + + + +
Sbjct: 418 YSCLVNLLGHAGLLYEAEKLITDMPVNNDTMPLFGALLTACKANGNVEMSEWLTKRIAKE 477
Query: 242 K-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ LMSN +A A RWE+A ++R ++ +KK GCS IEV
Sbjct: 478 DCSPNPDVNVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEVK 526
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 137/283 (48%), Gaps = 46/283 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +V W M+ Y G AV++ +ME + A P+ TLV ++ACS L+
Sbjct: 107 MPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME-SGGATPDRVTLVTAVTACSRAGDLNL 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF------NMLAY-------- 106
G+ +HSY+ + S+ V NA+++MY K G + A+++F N++++
Sbjct: 166 GRRIHSYMDGVFGFSLP--VANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYG 223
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KD+I W+++I+ +G +AL LF M + V PD T +
Sbjct: 224 IAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVT 283
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPI 208
L++ C++ G +DQG + + + + A +++MY + G ++++ + F R
Sbjct: 284 LLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTA-LIEMYSKCGHVDKSLQIFGRMQGK 342
Query: 209 EAEWSVWGALLNACRIHRND------EMFDPIRQELVNKKGVS 245
+A + W A++ C + N E+F+ +++ G++
Sbjct: 343 DA--AAWTAII--CGLATNGQASKALELFEEMQRSKTKPDGIT 381
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 7/207 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +I A RG ++V+ ++ + + + T VL A ++
Sbjct: 9 MPLRDC---NVLIRTLARRGSFSRVMAVYYDL-RARGLAADSYTYPFVLRAIGTMKLSVE 64
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + + +++ MY G A +VF+ + + ++ W+ ++
Sbjct: 65 GRKVHA-AAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYI 123
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A+ L M G PD VT + ++ACS G ++ G + M V+
Sbjct: 124 RCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLPV 183
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++DMY + G LEEA +MP
Sbjct: 184 AN--ALLDMYTKNGYLEEAVKMFEQMP 208
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 176/294 (59%), Gaps = 4/294 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ + SW MI GY + G E+A+S+F+EM+ + E PN T+ +LSAC+ + ALS G
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQNS-EFSPNPVTITCILSACAQLGALSLG 439
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH + + D S V A+I MY KCG + A ++F+ + K+ ++W+T+ISG +
Sbjct: 440 KWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGL 498
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL +FS M+ +G+ P VTF+ ++ ACSH GLV +G +F +M Y P +
Sbjct: 499 HGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYACVVD+ GRAG L+ A FI MPI+ SVW LL ACRIH++ + + ++L
Sbjct: 559 HYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFEL 618
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV--NPSIF 293
+VG L+SN + + A +R ++ L K G + IE+ P +F
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVF 672
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 6/220 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D + W TMI GY + E++ VF+++ + TL+++L A + + L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS ++T+ + V I++Y KCG + +A +F D+++++ +I G
Sbjct: 240 GMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYT 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +L LF ++++G T ++L+ H L+ S + T
Sbjct: 299 SNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI----YAIHGYSLKSNFLSHT 354
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ +Y + +E A E P E W A+++
Sbjct: 355 SVSTALTTVYSKLNEIESARKLFDESP-EKSLPSWNAMIS 393
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 115/244 (47%), Gaps = 19/244 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D+V++ MI GY G E ++S+F+E+ + A+ +TLV+++ + +
Sbjct: 284 RPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG-AKLKSSTLVSLVPVSGHLMLI---Y 339
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y S + + V A+ +Y K ++ A ++F+ K + SW+ +ISG N
Sbjct: 340 AIHGY-SLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A+ LF M + P+ VT ++SAC+ G + G V+++V T
Sbjct: 399 GLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-------KWVHDLVRSTDF 451
Query: 183 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ + + MY + G + EA MP + E + W +++ +H + + I
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVT-WNTMISGYGLHGHGQEALTIFS 510
Query: 237 ELVN 240
E++N
Sbjct: 511 EMLN 514
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK++ V+W TMI GY G +EA+++F EM + A P T + VL ACS +
Sbjct: 481 MPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIA-PTPVTFLCVLYACSHAGLVKE 539
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + + + RY S V+++ + G + A+Q + + S W T++
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGAC 599
Query: 120 AMNGCGRQAL----QLFSLMIINGVFPDDVTFIALIS 152
++ A +LF L PD+V + L+S
Sbjct: 600 RIHKDTNLARTVSEKLFELD------PDNVGYHVLLS 630
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ DV + ++ G++ +++VF + K+ + +PN +T +SA S G
Sbjct: 80 RPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGC 139
Query: 63 YVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H I D + L+G+ ++ MY K V A +VF+ + KD I W+T+ISG
Sbjct: 140 VIHGQAIVDGCDSEL--LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 122 NGCGRQALQLFSLMI 136
N +++Q+F +I
Sbjct: 198 NEMYVESIQVFRDLI 212
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 184/292 (63%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNEATLVNVLSACSSISAL 58
MP+++V+SW+ MI GY G + A+S+F+ ++ + + PNE T+ +VLSAC+ + AL
Sbjct: 152 MPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGAL 211
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVIS 117
G++VH+YI + + + ++G ++I+MY KCG + A +F N+ KD+++WS +I+
Sbjct: 212 QHGKWVHAYID-KTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMIT 270
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
+M+G + L+LF+ M+ +GV P+ VTF+A++ AC HGGLV +G FK M Y +
Sbjct: 271 AFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVS 330
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P QHY C+VD+Y RAG +E+A ++ MP+E + +WGALLN RIH + E + +
Sbjct: 331 PMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITK 390
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L+ + + L+SN +A RW + +RD + G+KK GCS +EV+
Sbjct: 391 LLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVD 442
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 18/190 (9%)
Query: 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101
+ +L+N+ S+C + + F + I T+ DL NA+I+ K G + IA ++F
Sbjct: 98 QTSLINMYSSCGTPT---FARQAFDEI-TQPDLPS----WNAIIHANAKAGMIHIARKLF 149
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIING--VFPDDVTFIALISACSHGG 158
+ + K++ISWS +I G G + AL LF SL + G + P++ T +++SAC+ G
Sbjct: 150 DQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLG 209
Query: 159 LVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+ G + + ++V T ++DMY + G +E A+ + E + W
Sbjct: 210 ALQHGKWVHAYIDKTGMKIDVVLGTS----LIDMYAKCGSIERAKCIFDNLGPEKDVMAW 265
Query: 216 GALLNACRIH 225
A++ A +H
Sbjct: 266 SAMITAFSMH 275
>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
Length = 802
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 173/287 (60%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ +SW M+ GY GF E+A+ +F M + ++ +P + T +SAC + +L
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFSEDALKLFNRM-RAEDVKPCDYTYAGAISACGELGSLKH 448
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + SN GNA+I MY +CG V A +F ++ D +SW+ +IS L
Sbjct: 449 GKQLHGHL-VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALG 507
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL+LF M+ G++PD ++F+ +++AC+H GLVD+G F++M + I+P
Sbjct: 508 QHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGE 567
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY ++D+ GRAG + EA I+ MP E S+W A+L+ CR + E+ +L
Sbjct: 568 DHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFK 627
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
GT+ L+SNT++ A RW DA ++R +R G+KK+ GCSWIE
Sbjct: 628 MTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIE 674
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 81/316 (25%), Positives = 133/316 (42%), Gaps = 70/316 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME--------------------------- 33
MP +D ++WTTM+ GY RG A SVF+E++
Sbjct: 223 MPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELF 282
Query: 34 --KTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYIS---TRYDLSVSNLVGNAVINM 87
E P +E T +VLSAC++ + G+ VH I+ + + V NA++ +
Sbjct: 283 RRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTL 342
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC----------------------- 124
Y KCG++ +A ++F+ + KD++SW+T++SG + C
Sbjct: 343 YSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMV 402
Query: 125 --------GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
AL+LF+ M V P D T+ ISAC G + G L + +
Sbjct: 403 SGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFE 462
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFD 232
+ A ++ MY R G ++EA MP + W A+++A H + E+FD
Sbjct: 463 GSNSAGNA-LITMYARCGAVKEANLMFLVMP-NIDSVSWNAMISALGQHGHGREALELFD 520
Query: 233 PIRQELVNKKGVSVGT 248
+ E + +S T
Sbjct: 521 RMVAEGIYPDRISFLT 536
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 35/196 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD V +I YA AV+VF+ + + P++ + +LSA + +S
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRH 177
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKC------------------------------ 91
S + L V NA++ +Y+KC
Sbjct: 178 CAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVG 237
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GDVG A VF + K + W+ +ISG +G +A +LF M++ V D+ TF
Sbjct: 238 YVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTF 297
Query: 148 IALISACSHGGLVDQG 163
+++SAC++ G G
Sbjct: 298 TSVLSACANAGFFAHG 313
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 184/293 (62%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSW MIG +AE G EA +F +M+ T+ +P+ +++L+AC+S AL +
Sbjct: 291 MKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQ-TEGCKPDAIMFLSILNACASAGALEW 349
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H + + L V VG A+++MY K G + A VF+ + ++++SW+ +ISGLA
Sbjct: 350 VKKIHRH-ALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G+ AL++F M +GV PD VTF+A++SACSH GLVD+G + AM+ VY I P
Sbjct: 409 QHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDV 468
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
H C+VD+ GRAG L EA+ FI M ++ + + WGALL +CR + N E+ + + +E +
Sbjct: 469 SHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLK 528
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ T+ L+SN +A A +W+ + +R +R G++K+ G SWIEV+ I
Sbjct: 529 LDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIH 581
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 8/239 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+ SW MI GY E E+A+ +F+EM + +PN T + +L AC+S+SAL +G+
Sbjct: 91 KKSGASWNAMIAGYVEHKHAEDAMRLFREMCH-EGVQPNAGTYMIILKACASLSALKWGK 149
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+ I L VG A++ MY KCG + A ++F+ L D+ISW+ +I A +
Sbjct: 150 EVHACIR-HGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQS 208
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G G++A +L M G P+ +T++++++AC S G L + A+ E+ +
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG 268
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDPIRQE 237
+V MY ++G +++A M + W+V GA R H ++F ++ E
Sbjct: 269 --TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE 325
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 6/222 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D++SWT MIG YA+ G +EA + +ME+ + +PN T V++L+AC+S AL + + V
Sbjct: 194 DIISWTVMIGAYAQSGNGKEAYRLMLQMEQ-EGFKPNAITYVSILNACASEGALKWVKRV 252
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + L + VG A++ MY K G + A VF+ + +D++SW+ +I A +G
Sbjct: 253 HRH-ALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGR 311
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-QGLILFKAMSTVYEIVPQTQHY 183
G +A LF M G PD + F+++++AC+ G ++ I A+ + E+ +
Sbjct: 312 GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVG-- 369
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V MY ++G +++A M + S W A+++ H
Sbjct: 370 TALVHMYSKSGSIDDARVVFDRMKVRNVVS-WNAMISGLAQH 410
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
V VL C L + VH I + + + V N ++++Y++CG + A VF+ L
Sbjct: 32 VEVLKRCLKQKDLMAAKQVHDCI-IKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
K SW+ +I+G + A++LF M GV P+ T++ ++ AC+
Sbjct: 91 KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACA 140
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 184/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD + W +M+ G A+ G +EA+ +F+ M + +P T +++ AC ++++L
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSG-IKPMPVTFSSLIPACGNLASLLL 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+ R + + +++I+MY KCG+V IA ++F+ + D++SW+ +I G A
Sbjct: 293 GKQLHAYV-IRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHA 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+AL LF M + + P+ +TF+A+++ACSH GLVD+G F +MS Y IVP
Sbjct: 352 LHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSL 411
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+A + D GR G LEEA FI M I+ SVW LL AC++H+N + + + +++ +
Sbjct: 412 EHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFD 471
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S+G+ ++SNT++ + RW +A +R +R+ G++K+ CSWIEV
Sbjct: 472 LEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVK 520
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW T++ G AE G EA+ + +EM + +P+ TL +VL + + +
Sbjct: 133 MPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDG-CKPDSFTLSSVLPIFAEGADVRR 191
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + +TR VG+++I+MY C +++VF+ L +D I W+++++G A
Sbjct: 192 GMELHGF-ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCA 250
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
NG +AL LF M+ +G+ P VTF +LI AC
Sbjct: 251 QNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPAC 284
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 105/234 (44%), Gaps = 24/234 (10%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNV---LSACSSISALSFGQYV 64
SW I A +G A+++F M + A + L ++ L +C+++ + G +
Sbjct: 21 SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDV--------GIAI------QVFNMLAYKDMI 110
H+ ++ R NA++N+Y K G A+ +VF+ + KD++
Sbjct: 81 HA-LALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FK 168
SW+T++ G A +G +AL L M +G PD T +++ + G V +G+ L F
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFA 199
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++ V + ++DMY + + +P+ + +W ++L C
Sbjct: 200 TRNGFHDDVFVG---SSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGC 249
>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
Length = 918
Score = 229 bits (585), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 189/288 (65%), Gaps = 9/288 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W+ +I Y+ G ++A+ ++ +M T+ +PN ATLV+V+S+C++++AL G+
Sbjct: 484 KDVVTWSALISSYSHLGHSKDALLLYDQM-LTEGVKPNSATLVSVISSCANLAALEHGEL 542
Query: 64 VHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+HS++ DLS+ A+++MY+KCG +GIA ++F+ + +D+++W+ +ISG
Sbjct: 543 IHSHVKDVGLECDLSICT----ALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMISGYG 598
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G QAL+LFS+M V P+ +TF+A++SAC H GLVD+G LF M Y + P
Sbjct: 599 MHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEE-YSLEPNL 657
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ G++G L+EAE + MPIE + +WG LL AC++H N EM + ++
Sbjct: 658 KHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFA 717
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + LMSN++ A++W + K+RD ++ G++K G S I++
Sbjct: 718 SDPENDGYYILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 127/229 (55%), Gaps = 9/229 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME--KTKEAEPNEATLVNVLSACSSISAL 58
+ +RD SW++M+ Y + G + + +++EM+ E E + +L++++S+CS + L
Sbjct: 377 LHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRL 436
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
GQ H Y S ++ ++ V NA+I+MY +CG+ +A ++F M+ KD+++WS +IS
Sbjct: 437 RLGQSAHCY-SIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISS 495
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+ G + AL L+ M+ GV P+ T +++IS+C++ ++ G ++ S V ++
Sbjct: 496 YSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIH---SHVKDVGL 552
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ C +VDMY + G L A M +E + W +++ +H
Sbjct: 553 ECDLSICTALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMH 600
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D+VSWT++IG Y G E+AV +F ME++ +P+E + +L+ + + +
Sbjct: 276 LPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRG 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I R + S L+GNA+I+MY KC V IA VF ML +D SWS+++
Sbjct: 335 GKTFHAAI-VRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393
Query: 121 MNGCGRQALQLFSLM 135
G + L+L+ M
Sbjct: 394 KAGLDLKCLELYREM 408
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE---AEPNEATLVNVLSACSSISA 57
MP+RDVV+WT +I G G C E +S M ++ A PN T+ + L AC +
Sbjct: 171 MPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGE 230
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
LS G +H + + + V +++ +MY KC A +F L KD++SW+++I
Sbjct: 231 LSVGTCLHGF-GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIG 289
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +A++LF M +G+ PD+V L++ + V G A+
Sbjct: 290 AYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAI 342
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 103/234 (44%), Gaps = 20/234 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D W +++ +S + M + A P+ T V SA + + AL G
Sbjct: 68 PCPDAFLWNSLLRSRHRASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVG 126
Query: 62 QYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
VH+Y S R+ L S V ++++ MY +CG V A+++F+ + +D+++W+ VISG
Sbjct: 127 AAVHAY-SVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISG 185
Query: 119 LAMNGCGRQALQLFSLMIIN----GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
NG + L M+ + G P+ T + + AC G + G L +
Sbjct: 186 CVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHG-----F 240
Query: 175 EIVPQTQHYACVV----DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 223
+ H VV MY + E+A E+P E + W +L+ A CR
Sbjct: 241 GVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWTSLIGAYCR 293
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
M +RDVV+W MI GY G +A+ +F ME+ +PN T + +LSAC
Sbjct: 582 MLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGN-VKPNSLTFLAILSAC 632
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD +SW ++I G + G +E + F++M K +P + +++ AC+ ++ L
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAK-IKPKSYSFSSIMPACAHLTTLHL 358
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI TR + + +++++MY KCG++ A Q+F+ + +DM+SW+ +I G A
Sbjct: 359 GKQLHGYI-TRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCA 417
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A++LF M G+ P+ V F+A+++ACSHGGLVD+ F +M+ + I P
Sbjct: 418 LHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGV 477
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA V D+ GRAG LEEA FI M I S+W LL+ACR+H N +M + + ++
Sbjct: 478 EHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILE 537
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N ++ A RW++A K R +RR+G++K CSWIEV ++
Sbjct: 538 VDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVY 590
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 123/249 (49%), Gaps = 8/249 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+VSW T+I G A G EE + + +EM +P+ TL +VL + +S
Sbjct: 199 MPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN-LKPDSFTLSSVLPLIAENVDISR 257
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H S R L V +++I+MY KC V + +VF +L +D ISW+++I+G
Sbjct: 258 GKEIHG-CSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCV 316
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + L+ F M++ + P +F +++ AC+H + G L + T
Sbjct: 317 QNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI-TRNGFDENI 375
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+ +VDMY + G + A+ M + S W A++ C +H E+F+ +
Sbjct: 376 FIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS-WTAMIMGCALHGQAPDAIELFEQMET 434
Query: 237 ELVNKKGVS 245
E + V+
Sbjct: 435 EGIKPNHVA 443
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 45/201 (22%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
++W ++I Y G +++ F M + P+ +VL +C+ + L+ G+ +H
Sbjct: 72 LAWKSVIRCYTSHGLPHQSLGSFIGMLASG-LYPDHNVFPSVLKSCALLMDLNLGESLHG 130
Query: 67 YISTRYDLSVSNLVGNAVINMYVK-------------CGDVGIAI--------------- 98
YI R L GNA++NMY K G+V +
Sbjct: 131 YI-IRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSE 189
Query: 99 ----QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
++F M+ KD++SW+T+I+G A NG + L++ M + PD T +++
Sbjct: 190 DSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLI 249
Query: 155 S-----------HGGLVDQGL 164
+ HG + QGL
Sbjct: 250 AENVDISRGKEIHGCSIRQGL 270
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
++++FN + + ++W +VI +G Q+L F M+ +G++PD F +++ +C+
Sbjct: 59 SLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 176/288 (61%), Gaps = 4/288 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK ++ WT +I G+ + G EEA+ ++QEM + A P++AT +VL ACS +++L G
Sbjct: 716 PKSTIL-WTAIISGHTQNGCSEEALQLYQEMHRNN-ARPDQATFASVLRACSILASLGDG 773
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLA 120
+ +HS I L L G+AV++MY KCGD+ ++QVF + K D+ISW+++I G A
Sbjct: 774 RMIHSLI-FHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFA 832
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG AL++F M + PDDVTF+ +++ACSH G V +G +F M Y+IVP+
Sbjct: 833 KNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRL 892
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
H AC++D+ GR G L+EAE FI ++ E +W LL ACRIH +D ++L+
Sbjct: 893 DHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIE 952
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + L+SN +A + W++ N +R +R GL+K GCSWI V
Sbjct: 953 LEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVV 1000
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 16/212 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +VV+W MI G+ +RG EA+ F+ M KT + +TL +VLSA +S+ AL++
Sbjct: 309 MPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTG-VKSTRSTLGSVLSAIASLEALNY 367
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ + + L+ + VG+++INMY KC + A +VF+ L ++++ W+ ++ G A
Sbjct: 368 GLLVHAQ-AIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYA 426
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + ++LFS M G +PD+ T+ +++SAC+ ++ G L I+
Sbjct: 427 QNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSF------IIKHN 480
Query: 181 QHY-----ACVVDMYGRAGLLEEAEA---FIR 204
Y +VDMY + G LEEA FIR
Sbjct: 481 FEYNLFVENTLVDMYAKCGALEEARQQFEFIR 512
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 8/222 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R VVS +I GYA+ E A+ +FQEM+ + P+E T ++L AC+ L+
Sbjct: 612 MPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQ-NEGLNPSEITFASLLDACTGPYKLNL 669
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H I R L + +G +++ MY+ A +F+ Y K I W+ +ISG
Sbjct: 670 GRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGH 729
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NGC +ALQL+ M N PD TF +++ ACS + G ++ S ++ +
Sbjct: 730 TQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIH---SLIFHVGLD 786
Query: 180 TQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + VVDMY + G ++ + EM + + W +++
Sbjct: 787 SDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ KRD+++W +++ Y+ +G E+ + F ++ PN+ T VLS+C+ + +
Sbjct: 142 LEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCG-VSPNQFTYAIVLSSCARLVDIDL 200
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + ++ ++I+MY KCG + A ++F+ + D +SW+ +I+G
Sbjct: 201 GKQVHCGV-IKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYV 259
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL++F M G+ PD V F+ +I+AC G +D LF M P T
Sbjct: 260 QVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQM-------PNT 312
Query: 181 QHYACVVDMYG--RAGLLEEAEAFIREM---PIEAEWSVWGALLNA 221
A V + G + G EA F + M +++ S G++L+A
Sbjct: 313 NVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSA 358
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD VSW +I GY + +EA ++F+ M A P+E +L ++LS C+++ AL G+
Sbjct: 514 RDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIA-PDEVSLASILSGCANLQALEQGEQ 572
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH ++ + L G+++I+MYVKCG + A VF+ + + ++S + +I+G A N
Sbjct: 573 VHCFL-VKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQND 631
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+A+ LF M G+ P ++TF +L+ AC+
Sbjct: 632 L-VEAIDLFQEMQNEGLNPSEITFASLLDACT 662
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 93/192 (48%), Gaps = 11/192 (5%)
Query: 29 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88
Q+ ++ K P + T + A + + +H+ + ++ +G+A++++Y
Sbjct: 74 LQQCQRIKIRHPFDETPQRLAQASRT------SKTIHAQ-TLKFGFGSKGRLGSAIVDLY 126
Query: 89 VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
KCG+V A + FN L +D+++W++V+S + G Q + F + GV P+ T+
Sbjct: 127 AKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYA 186
Query: 149 ALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++S+C+ +D G + + +E + ++DMY + G L +A I +
Sbjct: 187 IVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCE--GSLIDMYSKCGSLVDARK-IFDAV 243
Query: 208 IEAEWSVWGALL 219
++ + W A++
Sbjct: 244 VDPDTVSWTAMI 255
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 190/292 (65%), Gaps = 7/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++GF EEA++ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 155 MPERDLISWTAMINGFVKKGFHEEALAWFREMQISG-VKPDYVAIIAALNACTNLGALSF 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A +VF+ + + ++SW++VI G A
Sbjct: 214 GLWVHRYVMSQ-DFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFA 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M + I P+
Sbjct: 273 ANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRI 332
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQEL- 238
+HY C+VD+Y RAG LEEA ++ MP++ V G+LL ACR H N+ + + + + L
Sbjct: 333 EHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLS 392
Query: 239 -VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
VN KG S + ++SN +A +WE A+++R +++ +GLKK+ G S IE++
Sbjct: 393 DVNVKGHS--NYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEID 442
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 104/235 (44%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
+VSWT+ I G EA F +M + EPN T + +LS C S+ S G
Sbjct: 25 IVSWTSRITLLTRNGRLAEAAKEFSDM-RLAGVEPNHITFIALLSGCGDFSSGSEALGDL 83
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKC-------------------------------G 92
+H Y +VG A++ MY K G
Sbjct: 84 LHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNG 143
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
V A+++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA ++
Sbjct: 144 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALN 203
Query: 153 ACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
AC++ G + GL + + MS ++ + + ++D+Y R G +E A +M
Sbjct: 204 ACTNLGALSFGLWVHRYVMSQDFKNNVKVSN--SLIDLYCRCGCVEFAREVFDKM 256
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
IQ N + ++SW++ I+ L NG +A + FS M + GV P+ +TFIAL+S C
Sbjct: 14 IQKLNQSTSETIVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGC 70
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 182/288 (63%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++ W MI G+ E EEA+S+F EM+ + + ++ T+ ++L AC+ + AL
Sbjct: 299 MPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGALEL 357
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H YI + + V +G A+++MY KCG + A++VF + KD+++W+ +I GLA
Sbjct: 358 GKWLHVYIE-KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLA 416
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G +AL+LF M ++ V PD +TF+ +++ACSH GLV++G+ F +M Y I P
Sbjct: 417 MCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSI 476
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM GRAG + EAE I+ MP+ ++ V LL+ACRIH N + + Q+L+
Sbjct: 477 EHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIE 536
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ GT+ L+SN ++ WE A K+R+ + +KK GCS IEV
Sbjct: 537 LDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 584
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + VVSW TMIG YA+ EA+ +F+ ME +PNE TLVNVL+AC+ L
Sbjct: 198 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRME-IASVKPNEITLVNVLTACARSRDLET 256
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH YI + ++ +A++++Y KCG +A +FN + K++ W+ +I+G
Sbjct: 257 AKQVHKYID-ETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHV 315
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ +AL LF+ M ++GV D VT +L+ AC+H G ++ G L + +I
Sbjct: 316 EDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK-EKIEVDV 374
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G +E A +EMP E + W AL+
Sbjct: 375 ALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALI 412
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 105/220 (47%), Gaps = 7/220 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + ++I GY + +A+ +Q M + +P+ T ++ +C L
Sbjct: 100 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLM-MLQGLDPDRFTFPSLFKSCG---VLCE 155
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + ST+ + + N ++NMY CG + A +VF+ + K ++SW+T+I A
Sbjct: 156 GKQLHCH-STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 214
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+A++LF M I V P+++T + +++AC+ ++ + K + I T
Sbjct: 215 QWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDET-GIGFHT 273
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ ++D+Y + G A +MP E W ++N
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMP-EKNLFCWNIMIN 312
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A VFN + + +++I G RQA+ + LM++ G+ PD TF +L
Sbjct: 88 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+C G++ +G L ST +++MY G L A +M +
Sbjct: 148 KSC---GVLCEGKQL-HCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 202
Query: 212 WSVWGALLNA 221
W ++ A
Sbjct: 203 VVSWATMIGA 212
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 181/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+V+W MI GYA+ G EA+S+F M + P++ TL VLSACS++ AL G
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAGVLSACSAVGALELGSE 376
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y S R L + VG A+++MY KCGD+ AI+VF + K++ SW+ +I GLA NG
Sbjct: 377 LDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+Q F LM G+ PDD+TFI ++SAC H GLV G F +++ ++I+P+ +H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ R+G LEEA FI ++P + + + GALL ACR +N E+ + + ++ +
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A +DR +D+ K+R +R G+ K GCSW+EV+ +
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVL 606
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW M+ Y G E +F++M K PN T+ VL+AC L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + S + + +LVG+A++ MY KCG++ A +VF+ + KD+++W+ +I+G A
Sbjct: 273 GRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYA 331
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 178
NG +A+ LF M I G+ PD +T ++SACS G ++ G L + + +Y V
Sbjct: 332 QNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVY 391
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQE 237
+VDMY + G L++A R+MP + S W AL+ + R DE Q
Sbjct: 392 VG---TALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQHF-QL 446
Query: 238 LVNKKGV 244
+ N++G+
Sbjct: 447 MRNEEGL 453
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
MP ++V SW +I G A G +EA+ FQ M + +P++ T + VLSAC
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ TL +L A + A S + H+ + + L+ + +++I MY D G A
Sbjct: 149 RPDSYTLPFLLLAAARYPAPSLARAAHALLG-KIGLNGHDHTVHSLITMYSYLDDPGAAR 207
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHG 157
+VF+ + +D++SW+ ++ G + ++F M+ G V P+ VT +++AC
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQ 267
Query: 158 G 158
G
Sbjct: 268 G 268
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W+ MI Y +G+ EA+ +F+ M++ A N +L++VLS C S+++L
Sbjct: 298 MKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLA-LNFPSLISVLSVCVSLASLDH 356
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + R + V + +I MYVKCG++ A QVFN KD++ W+++I+G +
Sbjct: 357 GKQVHAQL-VRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYS 415
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL +F M +GV PDDVTFI ++SACS+ G V +GL LF+ M Y++ P
Sbjct: 416 QHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGI 475
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRA + EA + +MP+E + VWGALL ACR H ++ + ++L
Sbjct: 476 EHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQ 535
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A RW D +R++I+ + K GCSWIEV +
Sbjct: 536 LEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKV 587
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 107/245 (43%), Gaps = 26/245 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R V SW M+ Y E EA+ +F++M + N + ++S LS
Sbjct: 50 LPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR-----NTVSWNGLISGHIKNGMLSE 104
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + R +S +++V YV+ GDV A ++F + +K+++SW+ ++ GL
Sbjct: 105 ARRVFDTMPDRNVVSWTSMVRG-----YVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLL 159
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A +LF +M D V +I G +D+ LF M +
Sbjct: 160 QEGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT--- 212
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFD--PI 234
+ +V Y R G ++ A MP E S W A+L ++ R+ +FD P+
Sbjct: 213 --WTAMVSGYARNGKVDVARKLFEVMPERNEVS-WTAMLLGYTHSGRMREASSLFDAMPV 269
Query: 235 RQELV 239
+ +V
Sbjct: 270 KPVVV 274
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 50/210 (23%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVV+ T MIGGY E G +EA ++F EM K NV++ + +S
Sbjct: 174 MPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR-----------NVVTWTAMVSG--- 219
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y + G V +A ++F ++ ++ +SW+ ++ G
Sbjct: 220 ---------------------------YARNGKVDVARKLFEVMPERNEVSWTAMLLGYT 252
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R+A LF M + V V +I G VD+ +FK M
Sbjct: 253 HSGRMREASSLFDAMPVKPV----VVCNEMIMGFGLNGEVDKARRVFKGMKE-----RDN 303
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
++ ++ +Y R G EA R M E
Sbjct: 304 GTWSAMIKVYERKGYELEALGLFRRMQREG 333
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 122/295 (41%), Positives = 188/295 (63%), Gaps = 6/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALS 59
MP+R+VVSWT MIG YA+ +A+ +FQEM + E PN T+V +L A + ++AL
Sbjct: 246 MPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALG 305
Query: 60 FGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVIS 117
G+ +H+YI R +D VS L NA++ MY+KCG + +F+++ + KD++SW+T+IS
Sbjct: 306 QGKLLHAYILRRGFDSLVSVL--NALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLIS 363
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +A+Q+F M GV P+ +TFI+++ ACSH GLVD+G LF++M Y +
Sbjct: 364 GYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVD-YNVT 422
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC+VD+ GRAG L+EA I+ M I VWG+LL ACRIHR+ E + +
Sbjct: 423 PRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQ 482
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + + + G + L+++ +A A + ++D + L+K GCSWIEV +
Sbjct: 483 LFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGCSWIEVKKRL 537
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D++SW T+I C + EM +T+ P+EAT++ +L CS ++
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEM-RTEGLMPDEATVLGILPMCSLLAVRRQ 541
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI + ++ +V +GNA+I MY KCG + I+VF + KD+++W+ +IS
Sbjct: 542 GKEIHGYIFKSGFESNVP--IGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAF 599
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M G G++AL+ F M ++GV PD V FIA I ACSH G+V +GL F M T Y + P+
Sbjct: 600 GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPR 659
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYACVVD+ R+GLL +AE FI MP++ + S+WGALL+ACR N + + ++++
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A +W+ +R+ ++ GLKK+ G SWIE+ ++
Sbjct: 720 ELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVY 773
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 140/283 (49%), Gaps = 15/283 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW ++I GY GF E+A+ ++ + T P+ T+ +VL AC S+ A+
Sbjct: 182 MSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH I + ++ ++GN +++MY K + A +VF+ +A KD ++W+T+I G A
Sbjct: 241 GVAVHGVIE-KIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQ 179
G +++LF + +I+G PD ++ + I AC G + G + K + + +E
Sbjct: 300 QLGRHEASVKLF-MDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFE---- 354
Query: 180 TQHYAC--VVDMYGRAG-LLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIR 235
AC ++DMY + G LL E F + + W +L+N + E + +
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVF--DTTKCKDSVTWNSLINGYTQSGYYKEGLESFK 412
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ +K SV TF L+ + F+ I ++ + G +
Sbjct: 413 MMKMERKPDSV-TFVLLLSIFSQLADINQGRGIHCDVIKFGFE 454
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 15/223 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V+W ++I GY + G+ +E + F+ M+ E +P+ T V +LS S ++ ++ G+
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKM--ERKPDSVTFVLLLSIFSQLADINQGRG 443
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI-SGLAMN 122
+H + ++ ++GN+++++Y KCG++ ++VF+ ++ D+ISW+TVI S + +
Sbjct: 444 IHCDV-IKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFD 502
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVP 178
C Q+ + M G+ PD+ T + ++ CS + QG +FK S VP
Sbjct: 503 DC-TVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK--SGFESNVP 559
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY + G LE + M E + W AL++A
Sbjct: 560 IGN---ALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALISA 598
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W ++I G +A+ + EM + K+ +P+ T +V+++C+ I L G
Sbjct: 82 PTNNVYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLELG 140
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
VH + + +GNA+I+MY + D+ A VF ++ +D +SW+++ISG
Sbjct: 141 CIVHEH-AMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCS 199
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
NG AL ++ + G+ PD T +++ AC V +G+
Sbjct: 200 NGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV 242
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 181/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+V+W MI GYA+ G EA+S+F M + P++ TL VLSACS++ AL G
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAGVLSACSAVGALELGSE 376
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y S R L + VG A+++MY KCGD+ AI+VF + K++ SW+ +I GLA NG
Sbjct: 377 LDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+Q F LM G+ PDD+TFI ++SAC H GLV G F +++ ++I+P+ +H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ R+G LEEA FI ++P + + + GALL ACR +N E+ + + ++ +
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A +DR +D+ K+R +R G+ K GCSW+EV+ +
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVL 606
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW M+ Y G E +F++M K PN T+ VL+AC L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQGDLVL 272
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + S + + +LVG+A++ MY KCG++ A +VF+ + KD+++W+ +I+G A
Sbjct: 273 GRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYA 331
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 178
NG +A+ LF M I G+ PD +T ++SACS G ++ G L + + +Y V
Sbjct: 332 QNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVY 391
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQE 237
+VDMY + G L++A R+MP + S W AL+ + R DE Q
Sbjct: 392 VG---TALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQHF-QL 446
Query: 238 LVNKKGV 244
+ N++G+
Sbjct: 447 MRNEEGL 453
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
MP ++V SW +I G A G +EA+ FQ M + +P++ T + VLSAC
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ TL +L A + A S + H+ + + L+ + +++I MY D G A
Sbjct: 149 RPDSYTLPFLLLAAARYPAPSLARAAHALLG-KIGLNGHDHTVHSLITMYSYLDDPGAAR 207
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHG 157
+VF+ + +D++SW+ ++ G + ++F M+ G V P+ VT +++AC
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACRDQ 267
Query: 158 G 158
G
Sbjct: 268 G 268
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 190/295 (64%), Gaps = 6/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 59
MP+R+VVSW+ MIG YA+ +A+ +F++M + + PN T+V+VL+AC+ ++ALS
Sbjct: 240 MPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALS 299
Query: 60 FGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G+ +H+YI R +D VS L NA++ MY++CG + + +F + ++ D++SW+++IS
Sbjct: 300 HGKLLHAYILRRGFDSLVSVL--NALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLIS 357
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G G +A+Q+F MI G P +TFI+++ ACSH GLV++G +LF++M Y +
Sbjct: 358 GYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESM-VEYGVT 416
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC+VD+ GRAG L+EA IR M IE VWGALL ACRIH + E +
Sbjct: 417 PRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSH 476
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + + + G + L+++ +A A +++ + L+K TGCSWIEV +
Sbjct: 477 LFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKL 531
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 108/237 (45%), Gaps = 22/237 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +++ W ++ A +EA++ +M + + + + L AC ++SA
Sbjct: 135 PVKNIFVWNALLKALALADHGDEALARLADMGRLG-VPVDSYSYTHGLKACIAVSASHAP 193
Query: 62 -----QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
+ VH++ + R ++ V +I+ Y K G V A VF + ++++SWS +I
Sbjct: 194 ASARVREVHAH-AIRRGYALHTHVATTLIDCYAKLGIVRYAESVFAAMPERNVVSWSAMI 252
Query: 117 SGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISAC------SHGGLVDQGLILFK 168
A N A++LF M+ + + P+ +T +++++AC SHG L+ IL +
Sbjct: 253 GCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLL-HAYILRR 311
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ ++ ++ MY R G LE + + + W +L++ +H
Sbjct: 312 GFDSLVSVL------NALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMH 362
>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
lyrata]
Length = 534
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 189/312 (60%), Gaps = 21/312 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-------------------EKTKEAEPN 41
MP RD V T MI Y+E G +EA+ +FQ++ E K E
Sbjct: 184 MPDRDQVVATVMINCYSECGCIKEALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELF 243
Query: 42 EATLVNVLSACSSI-SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
++V + I S G VHS++ + + +SN VGNA+INMY +CGD+ +A +V
Sbjct: 244 REMQLSVFYLPARIWVRWSSGAGVHSFVENQ-KMELSNFVGNALINMYSRCGDINVAKRV 302
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + KD+IS++T+ISGLAM+G +A+ +F M+ G P+ VT +AL++ACSHGGL+
Sbjct: 303 FKGMRDKDVISYNTMISGLAMHGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLL 362
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
D GL +F +M V+ + PQ +HY C+VD+ GR G LEEA FI M IE + + GALL+
Sbjct: 363 DIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRVGRLEEAYRFIENMLIEPDHIMLGALLS 422
Query: 221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
AC+IH N E+ + I + L + GT+ L+S+ +A + +W+++ +IR+ +R G++K+
Sbjct: 423 ACKIHGNMELGEKIAKRLFESENPDSGTYVLLSHIYASSGKWKESTEIRESMRESGIEKE 482
Query: 281 TGCSWIEVNPSI 292
GCS IEV+ I
Sbjct: 483 PGCSTIEVDNQI 494
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T MI G+ G + VS++ M + P+ + +VL AC L + +
Sbjct: 91 NVYLYTAMIDGFVSSGRSADGVSLYHRMIHSS-VLPDNYVITSVLKAC----GLDECREI 145
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + + S VG ++ +Y K G++ A +VF+ + +D + + +I+ + GC
Sbjct: 146 HSQV-LKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECGC 204
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
++AL+LF + I D V + A+I +++ L LF+ M +P
Sbjct: 205 IKEALELFQDVKIK----DTVCWTAMIDGLVRNREMNKALELFREMQLSVFYLP 254
>gi|449435742|ref|XP_004135653.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
gi|449522917|ref|XP_004168472.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Cucumis sativus]
Length = 318
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 19/310 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERG------FCEEAVSVFQEM--EKTK-EAEPNEATLVNVLSA 51
M R+ V+W MI GY +G + +A+ +F+ M E T E +P + T+V +LSA
Sbjct: 1 MSLRNSVTWNAMIAGYCSQGGKVSQKYARDALELFRGMLVESTNFEVKPTDTTMVCILSA 60
Query: 52 CSSISALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
S + L G VH+YI D ++ +G ++NMY KCG + A VF + K+++
Sbjct: 61 ASQLGMLETGSCVHAYIKKTVDSPEKDVFIGTGLVNMYSKCGLLNSASSVFKQMKQKNVL 120
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+W+++ +GLA++G G++AL+L M +GV P+ VTF +L+SAC HGGL+++GL LF+ M
Sbjct: 121 TWTSMATGLAVHGRGKEALELLDAMGAHGVKPNAVTFTSLLSACCHGGLIEEGLHLFRVM 180
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
+ +VPQ QHY C+VD+ GR+G L EA I EMP+E + +W +LL++C +H + EM
Sbjct: 181 ERKFGVVPQMQHYGCIVDLLGRSGHLREAYKLILEMPMEPDGVLWRSLLSSCMLHGDVEM 240
Query: 231 FDPIRQELVNKKG---------VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+ + + LV ++G V F +SN +A +RW+D +RDE++ G++ K
Sbjct: 241 GERVGKLLVERQGGESFDDEWCVGSEDFVALSNVYASVERWDDVEALRDEMKIKGIENKA 300
Query: 282 GCSWIEVNPS 291
GCS ++ S
Sbjct: 301 GCSSLQTTGS 310
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SWT MI GY G E++ +F+EM+ P+E T+V+VL+AC+ + +L
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + + +VGNA+I+MY KCG A +VF+ + +D +W+ ++ GLA
Sbjct: 387 GEWIKTYID-KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G++A+++F M + PDD+T++ ++SAC+H G+VDQ F M + + I P
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VDM GRAGL++EA +R+MP+ VWGALL A R+H ++ M + ++++
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILE 565
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + +AL+ N +AG RW+D ++R +I + +KK G S IEVN
Sbjct: 566 LEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 35/248 (14%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DV SW MI GY EE++ + EME+ P TL+ VLSACS + +
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLCK 256
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--------------------- 101
VH Y+S S + NA++N Y CG++ IA+++F
Sbjct: 257 RVHEYVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVER 315
Query: 102 ----------NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+ + +D ISW+ +I G GC ++L++F M G+ PD+ T ++++
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+H G ++ G + K +I ++DMY + G E+A+ +M +
Sbjct: 376 TACAHLGSLEIGEWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 212 WSVWGALL 219
++ W A++
Sbjct: 435 FT-WTAMV 441
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
+P+ DVV W MI G+++ E V ++ M K + P+ T +L+ AL+
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFLLNGLKRDGGALA 152
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H ++ ++ L + V NA++ MY CG + +A VF+ +D+ SW+ +ISG
Sbjct: 153 CGKKLHCHV-VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-- 177
++++L M N V P VT + ++SACS + D+ L V+E V
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC-----KRVHEYVSE 264
Query: 178 ----PQTQHYACVVDMYGRAGLLEEAEAFIREM 206
P + +V+ Y G ++ A R M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A ++F + D++ W+ +I G + C + ++L+ M+ GV PD TF L+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 152 SACSHGG 158
+ G
Sbjct: 142 NGLKRDG 148
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW TMI GY++ GF ++AV VF+EM+K ++ PN TLV+VL A S + +L
Sbjct: 227 MRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLEL 286
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y + + + +++G+A+I+MY KCG + AI VF L +++I+WS +I+G A
Sbjct: 287 GEWLHLY-AEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFA 345
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F M GV P DV +I L++ACSH GLV++G F M +V + P+
Sbjct: 346 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRI 405
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR GLL+EAE FI MPI+ + +W ALL ACR+HRN EM + L++
Sbjct: 406 EHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMD 465
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A W + +++R ++ M ++K GCSWI+++
Sbjct: 466 MVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDID 514
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 127/275 (46%), Gaps = 55/275 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP+R+ SW T+I G++E + A+++F EM + EPN T +VL AC+ +
Sbjct: 78 MPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKI 137
Query: 59 SFGQYVHSYISTRY-----DLSVSNLVG-------------------------------- 81
G+ +H ++ +Y + +SNLV
Sbjct: 138 QQGKQIHG-LALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRK 196
Query: 82 --------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
N +I+ Y++ GD A +F+ + + ++SW+T+ISG + NG + A+++F
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256
Query: 134 LMII-NGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMY 190
M + P+ VT ++++ A S G ++ G L L+ S I + ++DMY
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSG---IRIDDVLGSALIDMY 313
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ G++E+A +P E + W A++N IH
Sbjct: 314 SKCGIIEKAIMVFERLPRENVIT-WSAMINGFAIH 347
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 32/222 (14%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ--ALQLFSLMIING-VFPDDVTFIA 149
D+ A ++FN + ++ SW+T+I G + + + A+ LF M+ + + P+ TF +
Sbjct: 67 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI------ 203
++ AC+ G + QG + ++ Y + +V MY GL+++A
Sbjct: 127 VLKACAKTGKIQQGKQI-HGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIE 185
Query: 204 REMPI-------EAEWSVWGALLNA------CRIHRNDEMFDPIRQELVNKKGVSVGTFA 250
REM + + E +W +++ C+ R +FD +RQ SV ++
Sbjct: 186 REMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARM--LFDKMRQR-------SVVSWN 236
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
M + ++ ++DA ++ E+++ + + + V P++
Sbjct: 237 TMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 179/290 (61%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VVSWT ++ GY G AV VF++M+ + EP++ ++V VL AC+ + AL
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQ-MEGFEPDDVSIVAVLPACAQLGALEL 267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y + ++ + + NA++ MY KCG + A+Q+F+ ++ KD+ISWST I GLA
Sbjct: 268 GRWIYAYCN-KHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLA 326
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G R+A++LF +M G V P+ +TF+ L+SACSH GL+D+GL F M Y + P
Sbjct: 327 AHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPS 386
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVD+ GR+G ++ A I MPI + +WG+LL+ACR H + + + LV
Sbjct: 387 VEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLV 446
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ VG +++N +A A RW + R EIR +K GCS IEV+
Sbjct: 447 ELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVD 496
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 43/246 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA---------TLVNVLSA 51
+P ++ MI YA+ +AV V+ M + +P+ + T +L A
Sbjct: 68 VPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLP-DPSSSGGFSVGDRFTYPFLLKA 126
Query: 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
C ++A G+ VH++++ R +V N++I MY +CGD+ +A +VF+ + KD +S
Sbjct: 127 CGGLAASQLGRQVHAHVA-RSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVS 185
Query: 112 WSTVISGLAMNGCGRQALQLFS-------------------------------LMIINGV 140
W+T+IS A G R+A +LF M + G
Sbjct: 186 WNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGF 245
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
PDDV+ +A++ AC+ G ++ G ++ A + ++ + +++MY + G +EEA
Sbjct: 246 EPDDVSIVAVLPACAQLGALELGRWIY-AYCNKHGMLGKIYICNALMEMYAKCGCIEEAL 304
Query: 201 AFIREM 206
M
Sbjct: 305 QLFHGM 310
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 177/293 (60%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSWT+MI GYA G+ E + F M ++ PN ++++VL AC ++ AL
Sbjct: 879 MAVRDLVSWTSMISGYAHNGYNSETLGFFDLM-RSSGVIPNRVSILSVLLACGNLGALRK 937
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G++ HSY I T ++ + LV A+++MY KCG + +A +F+ A KD++ WS +I+
Sbjct: 938 GEWFHSYVIQTGFEFDI--LVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASY 995
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G GR+A+ LF M+ GV P VTF ++SACSH GL+++G + F+ M+ + I +
Sbjct: 996 GIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARK 1055
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+YAC+VD+ GRAG L EA I MP+E + S+WG+LL ACRIH N ++ + I L
Sbjct: 1056 LSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLF 1115
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ V G L+SN +A RW + K+R + R G K G S +E + +
Sbjct: 1116 HLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQV 1168
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 176/293 (60%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK+DVVSW ++ GYA+ G +++ VF+ M + +P+ +V +L+A S +
Sbjct: 368 LPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM-LSDGIQPDAVAVVKILAASSELGIFQQ 426
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y+ R + + VG ++I +Y KCG +G A+++F + +D++ WS++I+
Sbjct: 427 ALCLHGYV-VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 485
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G G +AL++F M+ N V P++VTF++++SACSH GLV++GL +F M Y++ P
Sbjct: 486 IHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPD 545
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
++H+ +VD+ GR G L +A I MPI A VWGALL ACRIH N EM + + L
Sbjct: 546 SEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLF 605
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A +W++ ++R I+ GLKK G S +EV +
Sbjct: 606 WLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGV 658
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 129/247 (52%), Gaps = 17/247 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DV+SW+TMI YA EA+++F EM + K EPN T+V+ L AC+ L
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIE-KRFEPNSVTVVSALQACAVSRNLEE 325
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I+ + V A+I+MY+KC A+ +F L KD++SW ++SG A
Sbjct: 326 GKKIHK-IAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYA 384
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM------STVY 174
NG +++ +F M+ +G+ PD V + +++A S G+ Q L L + S V+
Sbjct: 385 QNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVF 444
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDP 233
A ++++Y + G L +A + M I + +W +++ A IH R E +
Sbjct: 445 V-------GASLIELYSKCGSLGDAVKLFKGM-IVRDVVIWSSMIAAYGIHGRGGEALEI 496
Query: 234 IRQELVN 240
Q + N
Sbjct: 497 FDQMVKN 503
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 14/222 (6%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI G+A G ++ ++ +M + K +P++ L +C+ +S L G+ +H ++
Sbjct: 786 WNVMIRGFATDGRFLSSLELYSKMME-KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHL 844
Query: 69 STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
SN V A+++MY KCGD+ A VF+ +A +D++SW+++ISG A NG
Sbjct: 845 VC---CGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNS 901
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHY 183
+ L F LM +GV P+ V+ ++++ AC + G + +G + ++I+ T
Sbjct: 902 ETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVAT--- 958
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G L+ A E + + W A++ + IH
Sbjct: 959 -AIMDMYSKCGSLDLARCLFDETAGK-DLVCWSAMIASYGIH 998
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 115/220 (52%), Gaps = 5/220 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D V WT+M+ GY + EEA+++F +M + TLV+V+SAC+ + + G
Sbjct: 167 RPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGS 226
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH + R + + N+++N+Y K G IA +F+ + KD+ISWST+I+ A N
Sbjct: 227 CVHGLV-IRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANN 285
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQ 181
+AL LF MI P+ VT ++ + AC+ +++G + K A+ +E+
Sbjct: 286 EAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVS 345
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + +EA + +P + + W ALL+
Sbjct: 346 --TALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W + + Y EE + +F M T P+ T+ L AC+ + L G
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + ++ VG+A++ +Y KCG +G A++VF D + W+++++G
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182
Query: 122 NGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +AL LFS M+ ++ V D VT ++++SAC+ L+ KA S V+ +V +
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQ-------LLNVKAGSCVHGLVIRR 235
Query: 181 QHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ ++++Y + G + A +MP E + W ++ AC
Sbjct: 236 EFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-AC 281
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 27 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86
+V Q ++ K E T + +IS S + H+ I Y L + +
Sbjct: 703 AVLQFWQRIKATESKYKT-IGSAPGTDTISCFSCLKKTHAKIFA-YGLQYDSRILTKFAI 760
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MYV + A VF + W+ +I G A +G +L+L+S M+ G+ PD
Sbjct: 761 MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820
Query: 147 FIALISACS------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
F + +C+ G ++ Q L+ + ++ A +VDMY + G +E A
Sbjct: 821 FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD-------AALVDMYAKCGDIEAAR 873
Query: 201 AFIREMPIE 209
+M +
Sbjct: 874 LVFDKMAVR 882
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 7/172 (4%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
LV++ AC++ ++S +HS + + + + ++Y KC + A +VF+
Sbjct: 7 LVDLFQACNNGRSVS---QLHSQV-FKTGILHDTFFATKLNSLYAKCASLQAARKVFDET 62
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQG 163
+ ++ W++ + + L+LF LMI G PD+ T + AC+ +++ G
Sbjct: 63 PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWS 213
++ EI + +V++Y + G + EA E P W+
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWT 174
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 192/291 (65%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVS T +I GYA+ G EEA+ +F+ +++ + + N T +VL+A S ++AL
Sbjct: 220 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQR-EGMQSNYVTYTSVLTALSGLAALDH 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R ++ ++ N++I+MY KCG++ A ++F+ L + +ISW+ ++ G +
Sbjct: 279 GKQVHNHL-LRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYS 337
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVP 178
+G GR+ L+LF+LMI N V PD VT +A++S CSHGGL D+G+ +F M++ + P
Sbjct: 338 KHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQP 397
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
++HY CVVDM GRAG +E A F+++MP E ++WG LL AC +H N ++ + + +L
Sbjct: 398 DSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQL 457
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + G + ++SN +A A RWED +R+ + + + K+ G SWIE++
Sbjct: 458 LQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELD 508
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 12/223 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT MI Y++RG+ +A+S+F +M ++ EPNE T VL++C S
Sbjct: 119 MPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSG-TEPNEFTFATVLTSCIGSSGFVL 177
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS+I + + VG+++++MY K G + A +F L +D++S + +ISG A
Sbjct: 178 GRQIHSHI-IKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYA 236
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
G +AL+LF + G+ + VT+ ++++A S +D G L ++ Y +
Sbjct: 237 QLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVV 296
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + ++DMY + G L A + E W A+L
Sbjct: 297 LQNS-----LIDMYSKCGNLTYARRIFDTLH-ERTVISWNAML 333
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 47 NVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
VL+ C A+ GQ VH++ I T Y V + +I YVKC + A VF+++
Sbjct: 63 TVLNECLRKRAIREGQRVHAHMIKTHYLPCV--YLRTRLIVFYVKCDSLRDARHVFDVMP 120
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
++++SW+ +IS + G QAL LF M+ +G P++ TF ++++C + G +
Sbjct: 121 ERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSC----IGSSGFV 176
Query: 166 LFKAM-STVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMP 207
L + + S + ++ + Y + ++DMY + G + EA + +P
Sbjct: 177 LGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLP 221
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 186/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+TMI GYA+ G E++ +F+ M+ T + PNE TLV V+SAC+ + +
Sbjct: 262 MSQRDVVAWSTMIAGYAQNGRPLESLELFERMKAT-DCRPNEVTLVGVISACAQLGSDEL 320
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + +Y + L +++ +G+A+I+MY +CG VG A VF+ + K +I+W+++I GLA
Sbjct: 321 VEQIGNYAENQR-LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLA 379
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG A+ L+ M NGV P+++TF+AL++AC+H GLVDQG+ F+ M + + PQ
Sbjct: 380 MNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQV 439
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ ++G L EA FI +M +E +W LL++CR H + E+ ++L+
Sbjct: 440 EHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLA 499
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + L+SN +A A W DA +IRD +R ++K + SWI+++
Sbjct: 500 MEPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLD 548
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 108/207 (52%), Gaps = 6/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R SW +MI YA G EA+++F M ++ A PN T+ +V S C+ L
Sbjct: 162 MERRTSASWNSMIACYAHGGEFREALALFDRM-LSEGARPNAITITSVFSICAKSGDLDT 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V I D + +V A++ MYVKC + A + F+ ++ +D+++WST+I+G A
Sbjct: 221 GKRVRDLIGE--DDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYA 278
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L+LF M P++VT + +ISAC+ G L+ + +P T
Sbjct: 279 QNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG--SDELVEQIGNYAENQRLPLT 336
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY R G + A + M
Sbjct: 337 SYLGSALIDMYTRCGHVGRARSVFSRM 363
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 41/159 (25%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV T ++ YA+ G E AVS F EM K+ P
Sbjct: 104 DVFVLTALVDFYAKNGDMESAVSAFDEM-PVKDPIPI----------------------- 139
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
N +I Y K GDV A ++F+ + + SW+++I+ A G
Sbjct: 140 -----------------NCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGE 182
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
R+AL LF M+ G P+ +T ++ S C+ G +D G
Sbjct: 183 FREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTG 221
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W+ MI Y + F EA+S F+EM + PN +++++L+ C++++ L +
Sbjct: 293 MRERDDGTWSAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDY 351
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ + +D+ V +A+I MY+KCG++ A +VF+ KD++ W+++I+G
Sbjct: 352 GREVHAAMLRCSFDMDV--FAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G QAL +F M + G+ PD +T+I ++ACS+ G V +G +F +M+ I P
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPG 469
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C+VD+ GR+GL+EEA I+ MP+E + +WGAL+ ACR+HRN E+ + ++L+
Sbjct: 470 AEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLL 529
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S+ + RWEDA+K+R I L K GCSWIE + +
Sbjct: 530 ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRV 582
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VVS+T+++ GY G +A+ +FQ+M E N + +L ++ + +
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQM-----PERNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R + A+++ Y + G + A +F+ + ++++SW+ +ISG A NG
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
A +LF +M ++V++ A++ G V+ LF AM P+ AC
Sbjct: 222 NLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAM-------PEHPVAAC 270
Query: 186 VVDM--YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
M +G+ G+++ A+ +M E + W A++ A
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKM-RERDDGTWSAMIKA 307
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+WT M+ GY + G EA ++F EM K N + ++S + ++
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNL 223
Query: 61 GQYVHSYISTRYDLS-VSNLVG-------------------------NAVINMYVKCGDV 94
+ + + R ++S + LVG NA++ + + G V
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A VF + +D +WS +I N +AL F M+ GV P+ + I++++ C
Sbjct: 284 DAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Query: 155 SHGGLVDQGLILFKAM 170
+ ++D G + AM
Sbjct: 344 AALAVLDYGREVHAAM 359
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y + A+ +F + +D+ S++ +ISGL++ RQ L + + + F
Sbjct: 52 NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR---RQTLPDAAAALASIPF 108
Query: 142 PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG--RAGLLEE 198
P V+F +L+ GL+ + LF+ M P+ H + V + G AG + E
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNE 161
Query: 199 AEAFIREMPIEAEWSVWGALLN----ACRIHRNDEMFD 232
A EMP + + W A+L+ A RI +FD
Sbjct: 162 ARRLFDEMP-DRDVVAWTAMLSGYCQAGRITEARALFD 198
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 181/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+V+W MI GYA+ G EA+S+F M + P++ TL VLSACS++ AL G
Sbjct: 318 KDIVAWNAMITGYAQNGMSNEAISLFHSM-RIAGMRPDKITLAGVLSACSAVGALELGSE 376
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y S R L + VG A+++MY KCGD+ AI+VF + K++ SW+ +I GLA NG
Sbjct: 377 LDGYASRR-GLYSNVYVGTALVDMYAKCGDLDKAIEVFRKMPCKNVASWNALICGLAFNG 435
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+Q F LM G+ PDD+TFI ++SAC H GLV G F +++ ++I+P+ +H
Sbjct: 436 RGDEAIQHFQLMRNEEGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTPEFQIIPKIEH 495
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ R+G LEEA FI ++P + + + GALL ACR +N E+ + + ++ +
Sbjct: 496 YSCMVDLLARSGHLEEAWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 555
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A +DR +D+ K+R +R G+ K GCSW+EV+ +
Sbjct: 556 PTNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVNKTPGCSWVEVSGKVL 606
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 133/247 (53%), Gaps = 9/247 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW M+ Y G E +F++M K PN T+ VL+AC L
Sbjct: 213 IPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQGDLVL 272
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + S + + +LVG+A++ MY KCG++ A +VF+ + KD+++W+ +I+G A
Sbjct: 273 GRWVEEW-SWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYA 331
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVP 178
NG +A+ LF M I G+ PD +T ++SACS G ++ G L + + +Y V
Sbjct: 332 QNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVY 391
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQE 237
+VDMY + G L++A R+MP + S W AL+ + R DE Q
Sbjct: 392 VG---TALVDMYAKCGDLDKAIEVFRKMPCKNVAS-WNALICGLAFNGRGDEAIQHF-QL 446
Query: 238 LVNKKGV 244
+ N++G+
Sbjct: 447 MRNEEGL 453
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52
MP ++V SW +I G A G +EA+ FQ M + +P++ T + VLSAC
Sbjct: 416 MPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ TL +L A + A S + H+ + + L+ + +++I MY D G A
Sbjct: 149 RPDSYTLPFLLLAAARYPAPSLARAAHALLG-KIGLNGHDHTVHSLITMYSYLDDPGAAR 207
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHG 157
+VF+ + +D++SW+ ++ G + ++F M+ G V P+ VT +++AC
Sbjct: 208 KVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACRDQ 267
Query: 158 G 158
G
Sbjct: 268 G 268
>gi|225454898|ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Vitis vinifera]
Length = 744
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 185/282 (65%), Gaps = 5/282 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T+I YA G EA+S++ +M ++ +PN ATLV+VLSACS +++L G+
Sbjct: 465 RDIVTWNTLISSYAHCGHFAEALSLYDKM-VLEDLKPNSATLVSVLSACSHLASLEEGEK 523
Query: 64 VHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+YI+ +++ ++S + A+I+MY KCG + + ++FN + +D+I+W+ +ISG M+
Sbjct: 524 VHNYINGGKFEFNLS--IATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMH 581
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G R A++ F M + P+ +TF+A++SAC+H GLV +G LF M Y + P +H
Sbjct: 582 GDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQD-YSVAPNLKH 640
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GR+G L+EAEA + MPI + VWGALL++C+IH EM I + ++
Sbjct: 641 YACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIDSD 700
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ G + ++SN ++ +WE+A K R ++ G++KKTG S
Sbjct: 701 VENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWS 742
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 12/231 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT--KEAEPNEATLVNVLSACSSISALSFG 61
RDVV+WT ++ G + G + + EM + PN TL AC ++ AL G
Sbjct: 198 RDVVAWTALVIGCVQNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEG 257
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + + + S +V + +++MY KCG+ A + F + KD+ISW+++IS +
Sbjct: 258 RCLHGLV-VKTGMDYSQVVQSLLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSR 316
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G + + +F M+++G++PD + ++S+ S+ V + + + + Q
Sbjct: 317 MGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMV 376
Query: 182 HYACVVDMYGRAGLLEEAEAF---IREMPIEAEWSV----WGALLNACRIH 225
A ++ MY + G L+ AE F + E EA W++ +GA A IH
Sbjct: 377 QNA-LLSMYCKFGFLKLAEKFFGRVNEQNFEA-WNLMVSGYGATHLARSIH 425
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD W ++I + G A+ +Q M + EA PN T+ ++++C+ + +++
Sbjct: 93 IPHRDAFLWNSIIKAHFSNGEYSRALDFYQWM-RASEALPNHFTIPMIVASCAELELVNY 151
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +S S S+ VG++ + MY KCG + A VF+ + ++D+++W+ ++ G
Sbjct: 152 GRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFRDVVAWTALVIGCV 211
Query: 121 MNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSH-GGLVD----QGLILFKAMST 172
NG + L+ M +G P+ T AC + G L++ GL++ M
Sbjct: 212 QNGESKMGLECLCEMHRIGGDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMD- 270
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAE 200
Y V Q+ ++ MY + G EEA
Sbjct: 271 -YSQVVQS----LLLSMYSKCGNPEEAH 293
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 38/200 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W MI GY G A+ FQ+ME++ A+PN T + VLSAC+ +
Sbjct: 563 MHERDVITWNVMISGYGMHGDARSAIEFFQQMEESS-AKPNGLTFLAVLSACAHAGLVKE 621
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+Y ++ K D +A ++ ++ ++ L
Sbjct: 622 GKY-----------------------LFGKMQDYSVA---------PNLKHYACMVDLLG 649
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ++A L M I+ PD + AL+S+C ++ G+ + A + V
Sbjct: 650 RSGNLQEAEALVLSMPIS---PDGGVWGALLSSCKIHNEIEMGIRI--AKHAIDSDVEND 704
Query: 181 QHYACVVDMYGRAGLLEEAE 200
+Y + +MY G EEAE
Sbjct: 705 GYYVMISNMYSSIGKWEEAE 724
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 3/188 (1%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
T EPN+ +N L + + IS+L H++I T S + + + +I++Y
Sbjct: 26 TWSHEPNDFNYLNHLLS-NQISSLKTLLQSHAFIITS-GYSNNIFIASKLISLYASFHKP 83
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
+ ++F+ + ++D W+++I NG +AL + M + P+ T ++++C
Sbjct: 84 SCSTELFDEIPHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASC 143
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+ LV+ G + +S + + + V MY + G+LEEA E+ +
Sbjct: 144 AELELVNYGRSIHGLVSKLGLFSGSSAVGSSFVYMYSKCGVLEEAYGVFDEILFR-DVVA 202
Query: 215 WGALLNAC 222
W AL+ C
Sbjct: 203 WTALVIGC 210
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SWT MI GY G E++ +F+EM+ P+E T+V+VL+AC+ + +L
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + + +VGNA+I+MY KCG A +VF+ + +D +W+ ++ GLA
Sbjct: 387 GEWIKTYID-KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G++A+++F M + PDD+T++ ++SAC+H G+VDQ F M + + I P
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VDM GRAGL++EA +R+MP+ VWGALL A R+H ++ M + ++++
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILE 565
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + +AL+ N +AG RW+D ++R +I + +KK G S IEVN
Sbjct: 566 LEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 35/248 (14%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DV SW MI GY EE++ + EME+ P TL+ VLSACS + +
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLCK 256
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--------------------- 101
VH Y+S S + NA++N Y CG++ IA+++F
Sbjct: 257 RVHEYVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVER 315
Query: 102 ----------NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+ + +D ISW+ +I G GC ++L++F M G+ PD+ T ++++
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+H G ++ G + K +I ++DMY + G E+A+ +M +
Sbjct: 376 TACAHLGSLEIGEWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 212 WSVWGALL 219
++ W A++
Sbjct: 435 FT-WTAMV 441
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
+P+ DVV W MI G+++ E V ++ M K + P+ T +L+ AL+
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFLLNGLKRDGGALA 152
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H ++ ++ L + V NA++ MY CG + +A VF+ +D+ SW+ +ISG
Sbjct: 153 CGKKLHCHV-VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-- 177
++++L M N V P VT + ++SACS + D+ L V+E V
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC-----KRVHEYVSE 264
Query: 178 ----PQTQHYACVVDMYGRAGLLEEAEAFIREM 206
P + +V+ Y G ++ A R M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A ++F + D++ W+ +I G + C + ++L+ M+ GV PD TF L+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 152 SACSHGG 158
+ G
Sbjct: 142 NGLKRDG 148
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 176/294 (59%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D++SW T+I C + EM +T+ P+EAT++ +L CS ++
Sbjct: 483 MSAHDIISWNTVIASSVHFDDCTVGFQMINEM-RTEGLMPDEATVLGILPMCSLLAVRRQ 541
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI + ++ +V +GNA+I MY KCG + I+VF + KD+++W+ +IS
Sbjct: 542 GKEIHGYIFKSGFESNVP--IGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAF 599
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M G G++AL+ F M ++GV PD V FIA I ACSH G+V +GL F M T Y + P+
Sbjct: 600 GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPR 659
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYACVVD+ R+GLL +AE FI MP++ + S+WGALL+ACR N + + ++++
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A +W+ +R+ ++ GLKK+ G SWIE+ ++
Sbjct: 720 ELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVY 773
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 15/262 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW ++I GY GF E+A+ ++ + T P+ T+ +VL AC S+ A+
Sbjct: 182 MSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMV-PDCFTMSSVLLACGSLMAVKE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH I + ++ ++GN +++MY K + A +VF+ +A KD ++W+T+I G A
Sbjct: 241 GVAVHGVIE-KIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQ 179
G +++LF M I+G PD ++ + I AC G + G + K + + +E
Sbjct: 300 QLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFE---- 354
Query: 180 TQHYAC--VVDMYGRAG-LLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIR 235
AC ++DMY + G LL E F + + W +L+N + E + +
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVF--DTTKCKDSVTWNSLINGYTQSGYYKEGLESFK 412
Query: 236 QELVNKKGVSVGTFALMSNTFA 257
+ +K SV TF L+ + F+
Sbjct: 413 MMKMERKPDSV-TFVLLLSIFS 433
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 15/223 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V+W ++I GY + G+ +E + F+ M+ E +P+ T V +LS S ++ ++ G+
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESFKMMKM--ERKPDSVTFVLLLSIFSQLADINQGRG 443
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI-SGLAMN 122
+H + ++ ++GN+++++Y KCG++ ++VF+ ++ D+ISW+TVI S + +
Sbjct: 444 IHCDV-IKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFD 502
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVP 178
C Q+ + M G+ PD+ T + ++ CS + QG +FK S VP
Sbjct: 503 DC-TVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFK--SGFESNVP 559
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY + G LE + M E + W AL++A
Sbjct: 560 IGN---ALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALISA 598
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D V+W TMI GYA+ G E +V +F +M P+ ++ + + AC L
Sbjct: 283 MAVKDSVTWNTMICGYAQLGRHEASVKLFMDM--IDGFVPDMLSITSTIRACGQSGDLQV 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ + N +I+MY KCGD+ A +VF+ KD ++W+++I+G
Sbjct: 341 GKFVHKYLIGS-GFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYT 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+G ++ L+ F +M + PD VTF+ L+S S ++QG
Sbjct: 400 QSGYYKEGLESFKMMKMERK-PDSVTFVLLLSIFSQLADINQG 441
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 2/163 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W ++I G +A+ + EM + K+ +P+ T +V+++C+ I L G
Sbjct: 82 PTNNVYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARILDLELG 140
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
VH + + +GNA+I+MY + D+ A VF ++ +D +SW+++ISG
Sbjct: 141 CIVHEH-AMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCS 199
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
NG AL ++ + G+ PD T +++ AC V +G+
Sbjct: 200 NGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGV 242
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 10/301 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-------KTKEA--EPNEATLVNVLSA 51
MP+RD VSW T++ GY + G A +F++M T EA + ++ T++++LSA
Sbjct: 176 MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSA 235
Query: 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
C+ L G+ VH+ I R S V NA+I+MY KCG + A+ +F+ + KD++S
Sbjct: 236 CAVSGLLGLGKRVHASIE-RTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVS 294
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +I GLAM+G G +ALQLFS M G PD VTF+ ++ AC+H G VD+GL F AM
Sbjct: 295 WNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAME 354
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
Y + P+ +HY C+VD+ GR G L+EA + MP+E +WG LL ACR+H +
Sbjct: 355 RDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLA 414
Query: 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ + LV + G +++SN +A A W++ IR ++ ++K +G S IEV+
Sbjct: 415 EEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDE 474
Query: 292 I 292
+
Sbjct: 475 V 475
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 111/242 (45%), Gaps = 28/242 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV+ + T+I + A SVF EM+ + N T +L ACS + + +
Sbjct: 79 DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADN-FTYPFLLKACSGKVWVRVVEMI 137
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + + + V N++I+ Y K G++G A ++F+ + +D +SW+T++ G G
Sbjct: 138 HAQVE-KMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGE 196
Query: 125 GRQALQLFSLMIINGVFP----------DDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
A +LF M V DD T I+++SAC+ GL+ G V+
Sbjct: 197 MNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLG-------KRVH 249
Query: 175 EIVPQTQHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
+ +T+ + C ++DMY + G LE A + M + + W A++ +H +
Sbjct: 250 ASIERTR-FKCSTPVSNALIDMYAKCGSLENALSIFHGM-VRKDVVSWNAIIQGLAMHGH 307
Query: 228 DE 229
E
Sbjct: 308 GE 309
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 14/180 (7%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
++ L CSS++ + + +H+ + + +L + VG +I + C + +A+ VFN +
Sbjct: 21 ISDLHRCSSLNQV---KQIHAQV-LKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQ 76
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG---GLVDQ 162
D++ ++T+I N A +F M +GV D+ T+ L+ ACS +V+
Sbjct: 77 DPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEM 136
Query: 163 GLILFKAMSTVYEI-VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ M +I VP + ++D Y + G L EA EMP E + W +L+
Sbjct: 137 IHAQVEKMGFCLDIFVPNS-----LIDSYFKLGELGEARRLFDEMP-ERDTVSWNTILDG 190
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 175/286 (61%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D VSW +MI GYA G E++ +F+ M + P++ T + VL AC I+AL +G
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMA-LDGSGPDQVTFIAVLGACDQIAALRYGMS 385
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HSY+ + + +VG A+++MY KCG + + +VF+ + K ++SWS +++G ++G
Sbjct: 386 IHSYL-VKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHG 444
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR+A+ + M N V PD+ F +++SACSH GLV +G +F M Y + P HY
Sbjct: 445 RGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHY 504
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
+C+VD+ GRAG L+EA IR M I+ +W ALL A R+H+N ++ + Q++ +
Sbjct: 505 SCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNP 564
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V ++ +SN +A RW+D ++R +RR GLKK GCS+IE++
Sbjct: 565 KVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELD 610
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 117/230 (50%), Gaps = 13/230 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+ SW TMI GYA+ A VF M K + TL+ +LSAC+ + A+
Sbjct: 222 MAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG-LFADCTTLLGLLSACADLKAVKE 280
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + + N++I MY C + A ++F + +KD +SW+++I G A
Sbjct: 281 GKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYA 340
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
NG ++L+LF M ++G PD VTFIA++ AC DQ L MS +V +
Sbjct: 341 RNGDAFESLRLFRRMALDGSGPDQVTFIAVLGAC------DQIAALRYGMSIHSYLVKKG 394
Query: 180 ----TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T +VDMY + G L + EMP ++ S W A++ +H
Sbjct: 395 FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS-WSAMVAGYGLH 443
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W MI GYA G +++ +++EM + N T VL AC + + G+ VHS +
Sbjct: 129 WNFMIRGYASNGLPMKSLVLYREMLCFGQRADN-FTYPFVLKACGDLLLVEIGRRVHSEV 187
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
L VGN+++ MY K GD+G A VF+ +A +D+ SW+T+ISG A N A
Sbjct: 188 VV-CGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTA 246
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+F LM G+F D T + L+SAC+ V +G ++
Sbjct: 247 FLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVI 284
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +VSW+ M+ GY G EA+S+ M K P+ ++LSACS +
Sbjct: 425 MPDKSLVSWSAMVAGYGLHGRGREAISILDGM-KANSVIPDNGVFTSILSACSHAGLVVE 483
Query: 61 GQYVHSYISTRYDL 74
G+ + + Y++
Sbjct: 484 GKEIFYKMEKEYNV 497
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L + ++ + GQ +H+++ + L + + + Y CG + A +F+ + K
Sbjct: 65 LLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLK 124
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ W+ +I G A NG ++L L+ M+ G D+ T+ ++ AC LV+ G
Sbjct: 125 NSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIG 180
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 179/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSWT MI GY G +A+ VF++M+ EP+E ++++VL AC+ + AL
Sbjct: 211 MPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVG-VEPDEISIISVLPACAQLGALEV 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y R L + NA++ MY KCG +G A Q+F+ ++ D+ISWST+I GLA
Sbjct: 270 GKWIHMYCD-RNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGLA 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R+A++LF M + P+ +TF+ L+SAC+H G ++GL F +MS Y I P+
Sbjct: 329 NHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEV 388
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L +A I +MP++ + +WG+LL++CR H N ++ + L
Sbjct: 389 EHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLEE 448
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A +W+ +++R I+ +KK G S I++N
Sbjct: 449 LEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDIN 497
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 133/306 (43%), Gaps = 45/306 (14%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAE------PNEATLVNVLSACSSISALSFGQ 62
+ MI + A+ ++EM + K+ E P+ T V+ +CS + + G+
Sbjct: 80 YNAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGK 139
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKC--------------------------GDVGI 96
VH+++ ++ + + NA+I+MY KC G VG+
Sbjct: 140 QVHAHL-CKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGV 198
Query: 97 -----AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
A +F+++ Y+ ++SW+ +ISG G AL +F M I GV PD+++ I+++
Sbjct: 199 GQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVL 258
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-- 209
AC+ G ++ G + ++ +T +++MY + G + +A +M
Sbjct: 259 PACAQLGALEVGKWI-HMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDV 317
Query: 210 AEWSVW-GALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
WS G L N + E+F +++ + G+ TF + + A A W +
Sbjct: 318 ISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGI---TFLGLLSACAHAGFWNEGLAY 374
Query: 269 RDEIRR 274
D + +
Sbjct: 375 FDSMSK 380
>gi|297599623|ref|NP_001047477.2| Os02g0625100 [Oryza sativa Japonica Group]
gi|125582938|gb|EAZ23869.1| hypothetical protein OsJ_07586 [Oryza sativa Japonica Group]
gi|255671102|dbj|BAF09391.2| Os02g0625100 [Oryza sativa Japonica Group]
Length = 493
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 174/282 (61%), Gaps = 1/282 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ +W +MI G + CEEA+ VF +M + PNE LV+ +SAC+ + +
Sbjct: 196 MPSRNAATWGSMITGLLQSDHCEEALRVFSDMVASGVV-PNEPALVSTVSACTQLRWMEH 254
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y + ++S ++ A+++MY KCG + A++VF + +++ SW+++I+GLA
Sbjct: 255 GTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLA 314
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG RQAL LF M + GV P+D+TFI L+SACSH GLVD+G LF M + I P
Sbjct: 315 MNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVP 374
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GR+G + EA F++ MP+E +WGAL AC+IH E+ + + ++L+
Sbjct: 375 EHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIE 434
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+ + L+SN +A ++RW+D +R ++ + K TG
Sbjct: 435 LEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTG 476
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 58/223 (26%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WTTM+ G+A G E A F M + NV+S
Sbjct: 138 DVVTWTTMVTGHANAGDVERARWFFDAMPEK-----------NVVS-------------- 172
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
N ++ Y + G + A ++F+ + ++ +W ++I+GL +
Sbjct: 173 ----------------WNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDH 216
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI--------LFKAMSTVYEI 176
+AL++FS M+ +GV P++ ++ +SAC+ ++ G L AMS V
Sbjct: 217 CEEALRVFSDMVASGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLA- 275
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMYG+ G + +A MP+ +S W +++
Sbjct: 276 -------TAIVDMYGKCGSIRDAVRVFAAMPVRNIYS-WNSMI 310
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 179/287 (62%), Gaps = 2/287 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSW MI GY G ++A+ +F++M+ E +P+ T++++LSAC+ + G
Sbjct: 238 PDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGE-KPDTVTMLSLLSACADSGDMDAG 296
Query: 62 QYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++S R+ + S ++GNA+I+MY KCG + A++VF ++ K++ +W+++I GLA
Sbjct: 297 RRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLA 356
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +A+ +F M+ V PD++TF+A++ ACSHGG+VD+G F M Y I P
Sbjct: 357 LHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNV 416
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM RAGLL+EA FI M IE +W LL ACRIH E+ + QEL+
Sbjct: 417 KHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLK 476
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A W + +R + G+ K+ GC+ ++
Sbjct: 477 ARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 97/225 (43%), Gaps = 45/225 (20%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D V+W+ MI G+A RG A +F E
Sbjct: 177 REDAVAWSAMISGFARRGDIGAARELFDES------------------------------ 206
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
V +LV N +I Y K GD+ A ++F+ +D++SW+ +ISG
Sbjct: 207 ------------PVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 254
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQT 180
G +QA++LF M G PD VT ++L+SAC+ G +D G L + +S + I P T
Sbjct: 255 CGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPST 314
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G + A M + S W +++ +H
Sbjct: 315 VLGNALIDMYAKCGSMTSALEVFWLMQ-DKNVSTWNSIIGGLALH 358
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-----EPNEATLVNVLSACSSI 55
+P D + T+I G A +AVS++ M + P++ T VL AC+++
Sbjct: 68 IPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAM 127
Query: 56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A G VH+++ + V NA+I M+ CGD+G A +F+ A +D ++WS +
Sbjct: 128 GASETGAQVHAHV-VKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAM 186
Query: 116 ISGLAMNGCGRQALQLF 132
ISG A G A +LF
Sbjct: 187 ISGFARRGDIGAARELF 203
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++V +W ++IGG A G EA+ VFQ+M + +P+E T V VL ACS +
Sbjct: 340 MQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGN-VKPDEITFVAVLVACSHGGMVDK 398
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G + + RY + + +++M + G + A + + M + + W T++
Sbjct: 399 GHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGAC 458
Query: 120 AMNG 123
++G
Sbjct: 459 RIHG 462
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 186/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV+W +I GYA+ G EA+ +F M + P+ T++ VLSACS+I AL
Sbjct: 290 MPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAG-PHPDRVTMIEVLSACSTIGALDL 348
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V ++ S + L V +A+I+MY KCG + A++VF + +K+ +SW+ +IS LA
Sbjct: 349 GKWVETHASEK-GLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALA 407
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++AL LF M + V P+D+TFI ++SAC H GLVD+G LF++M+ + +VP
Sbjct: 408 FHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVP 467
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY+C+VD+ RAGLL EA I++MP + + V G+LL AC+ RN ++ + + Q
Sbjct: 468 KVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVLGSLLGACQRRRNADVGERVIQLF 527
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + + S +A RW+D+ K+R +R+ G+ K GCSWI++ +
Sbjct: 528 LEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMRQCGVSKTPGCSWIDIGAHV 581
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW +MI GY++ GF +EA+ +F EM + + EP+E TLV+VL AC + L
Sbjct: 189 MGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM-REEGFEPDEMTLVSVLGACGDLGDLGL 247
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V ++ + + V++ +G+A+I+MY KCGD+ A +VF+ + KD+++W+ +I+G A
Sbjct: 248 GRWVEGFVLEK-KMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYA 306
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+ LF+ M G PD VT I ++SACS G +D G + S E Q
Sbjct: 307 QNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHAS---EKGLQH 363
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
Y + ++DMY + G L++A MP + E S W A+++A H
Sbjct: 364 DVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVS-WNAMISALAFH 409
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 115/232 (49%), Gaps = 25/232 (10%)
Query: 1 MPKRDVVSWTTMIGGYA----ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56
+ K ++ ++ M+ G A + FC V ++ ++ K+ + N T + AC ++
Sbjct: 87 LTKPNIYAFNVMLRGLATTWKKYDFC---VELYYKL-KSLGLKANNFTYPFLFIACGNVR 142
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
L G+ H + + L V +++I MY +CG++G A +VF+ + +D++SW+++I
Sbjct: 143 GLVHGKIGHCLV-FKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMI 201
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-------QGLILFKA 169
SG + G ++A+ LF M G PD++T ++++ AC G L D +G +L K
Sbjct: 202 SGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGAC--GDLGDLGLGRWVEGFVLEKK 259
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
M + + ++DMYG+ G L A MP + W A++
Sbjct: 260 MEV------NSYMGSALIDMYGKCGDLISARRVFDSMP-NKDVVTWNAIITG 304
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 176/287 (61%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +++W MI GYA+ G + +++EME +K P+ TLV VLS+C+ + ALS
Sbjct: 174 MPRKGLITWNAMINGYAQNGLANNVLELYKEME-SKGFCPDPLTLVGVLSSCAHLGALSV 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V + + S + + NA++NMY +CG++ A +F+ + K ++SW+ +I G
Sbjct: 233 GKEVERKMEG-FGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYG 291
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ LF MI G+ PD F++++SACSH GL ++GL F M Y + P
Sbjct: 292 MHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGA 351
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L EA I M + A+ ++WGALL AC+IHRN E+ + ++++
Sbjct: 352 EHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIE 411
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + L+SN + A E ++R +R+ LKK GCS++E
Sbjct: 412 LEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVE 458
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 122/238 (51%), Gaps = 6/238 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ V + +++ GYA ++ V +F EM + E N T++ ++ C L G
Sbjct: 75 RKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELG-VEINGVTMLGLVQPCGIPGNLGLGM 133
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH + ++ L + + VGN ++ MYVK G++ ++F+ + K +I+W+ +I+G A N
Sbjct: 134 CVHGF-CVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQN 192
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQ 181
G L+L+ M G PD +T + ++S+C+H G + G + + M + P
Sbjct: 193 GLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLN 252
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ +V+MY R G L++A MP+++ S W A++ +H E+ + E++
Sbjct: 253 N--ALVNMYARCGNLKKARDIFDGMPVKSVVS-WTAIIGGYGMHGQGEVAVGLFDEMI 307
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 5/186 (2%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97
A PN T + +C+++S G+ +H ++ + + V ++I+MY KC + A
Sbjct: 6 ASPNAFTFPFAIKSCAALSLPITGKQLHCHV-FKTGCLLEPFVQTSLISMYGKCSLIDNA 64
Query: 98 IQVF--NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
++F N + K + +++++SG A+N + + LF M GV + VT + L+ C
Sbjct: 65 RKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCG 124
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
G + G+ + + + + C++ MY ++G ++ EMP + W
Sbjct: 125 IPGNLGLGMCV-HGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG-LITW 182
Query: 216 GALLNA 221
A++N
Sbjct: 183 NAMING 188
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 177/290 (61%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + VVSWT ++ GY G AV VF+ M+ + EP++ ++V VL AC+ + AL
Sbjct: 208 MPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQ-MEGFEPDDVSIVAVLPACAQLGALEL 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++++Y S ++ + + NA++ MY KCG + A+Q+F+ ++ KD+ISWST I GLA
Sbjct: 267 GRWIYAYCS-KHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLA 325
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G R+A++LF +M G V P+ +TF+ L+SACSH GLVD+GL M Y + P
Sbjct: 326 AHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPG 385
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CVVD+ GR+G ++ A IR MP+ + +WG+LL+ACR H + E + LV
Sbjct: 386 VEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLV 445
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ VG +++N + A RW + R EIR +K GCS IEV+
Sbjct: 446 ELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVD 495
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 42/238 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--------TLVNVLSAC 52
+P ++ MI YA+ +AV V+ M + P+ A T +L AC
Sbjct: 68 IPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLP-HPSTAGFSVGDRFTYPFLLKAC 126
Query: 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW 112
+++A G+ VH++++ R +V N++I MY +CGD+ A + F+ + KD++SW
Sbjct: 127 GALAASRLGRQVHAHVA-RSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSW 185
Query: 113 STVISGLAMNGCGRQALQL-------------------------------FSLMIINGVF 141
+T+IS A G R+A +L F LM + G
Sbjct: 186 NTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFE 245
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
PDDV+ +A++ AC+ G ++ G ++ A + + ++ + +++MY + G +EEA
Sbjct: 246 PDDVSIVAVLPACAQLGALELGRWIY-AYCSKHGMLGKVYICNALMEMYAKCGCIEEA 302
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +++W MI GYA+ G + ++++ME T P+ TLV VLS+C+ + A +
Sbjct: 220 MPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV-PDPVTLVGVLSSCAHLGAHAA 278
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V I + + NA+INMY +CG++ A +F+ + K++ISW+ +I+G
Sbjct: 279 GREVEQRIELS-GFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYG 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+QLF MI + PD F++++SACSH GL ++GL F AM Y + P
Sbjct: 338 MHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGP 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+CVVD+ GRAG LEEA I M +E + +VWGALL AC+IHRN E+ + ++++
Sbjct: 398 EHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIE 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++G + L+SN F+ A E ++R +R LKK+ GCS++E I
Sbjct: 458 FEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRI 509
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 122/242 (50%), Gaps = 6/242 (2%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V + +I GY+ +AV +F++M K + N T++ ++ C+ L FG +H+
Sbjct: 125 VCYNALIAGYSLNSRFSDAVLLFRQMRK-EGVSVNAVTMLGLIPVCAGPIHLGFGTSLHA 183
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
S R+ L VGN ++ MYV+CG V A ++F+ + K +I+W+ +ISG A NG
Sbjct: 184 -CSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAG 242
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQTQHYAC 185
L L+ M G+ PD VT + ++S+C+H G G + + + + + P ++
Sbjct: 243 HVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--A 300
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
+++MY R G L +A A M E W A++ +H E+ + E+++ +
Sbjct: 301 LINMYARCGNLVKARAIFDGM-TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELP 359
Query: 246 VG 247
G
Sbjct: 360 DG 361
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 8/222 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ SW + A + +EA++++ +M + ++ PN T +C+S+S G
Sbjct: 18 QNTTASWNARLRELARQRHFQEALNLYCQMLASGDS-PNAFTFPFAFKSCASLSLPLAGS 76
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLA 120
+H ++ + V ++I+MY KC + A +VF N + + ++ +I+G +
Sbjct: 77 QLHGHV-IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYS 135
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
+N A+ LF M GV + VT + LI C+ G + G A S + +
Sbjct: 136 LNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVRFGLDGD 193
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
C++ MY R G ++ A MP E W A+++
Sbjct: 194 LSVGNCLLTMYVRCGSVDFARKLFDGMP-EKGLITWNAMISG 234
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/288 (38%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSW+ +IGG+A G + A+ +F+ M++ + PN T+ VLSAC + AL G+ +
Sbjct: 587 NVVSWSAVIGGFASSGDTDRALELFRRMQQ-QWLSPNVVTMATVLSACVDLLALRLGREL 645
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + + +L +LV N +INMY KCG V A +VF+ + +D+ISW+++++G M+G
Sbjct: 646 HGH-AMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGL 704
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF+ M V PD VTF+A++SAC H G V +G LF M ++I P +HY
Sbjct: 705 CDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYT 764
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V + GRAGLL +A + MP+ + VWGALLN+CRIH + M + ++ +
Sbjct: 765 CMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQ 824
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G L++N +A W+++ K+R + GL+K G SWIEV+ +
Sbjct: 825 STGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKV 872
Score = 67.0 bits (162), Expect = 9e-09, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS--ALSFGQ 62
D V+WT ++ +A G + + +F EM+++ E N ++ LSAC AL+ G+
Sbjct: 446 DAVTWTALLSAHARSGKHADVLQLFGEMQRSG-CEGNAESMAVALSACPYAGDLALAKGK 504
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + + V N++I MY K G++ A + F K+ ++W+T+I+ A
Sbjct: 505 AIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAA 564
Query: 123 GCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+AL + + M I V P+ V++ A+I + G D+ L LF+ M
Sbjct: 565 RLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRM 614
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 40/211 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW +M+ GY G C+EA+++F +M EP+ T V VLSAC ++
Sbjct: 684 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGAT-VEPDGVTFVAVLSACGHAGRVTE 742
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + + + +S S M ++ ++ L
Sbjct: 743 GRRLFDRMVRAHKISPS-------------------------------MEHYTCMVYLLG 771
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-HGGLVDQGLILFKAMSTVYEIVPQ 179
G R A +L M + PD + AL+++C HG D + + +
Sbjct: 772 RAGLLRDASELVETMPVR---PDLCVWGALLNSCRIHG---DAAMAEATIANVLQSEDQS 825
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
T ++ + ++Y G+ +E++ +R M EA
Sbjct: 826 TGNHMLITNLYAMCGMWDESKK-VRVMTKEA 855
Score = 43.9 bits (102), Expect = 0.094, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 93/244 (38%), Gaps = 46/244 (18%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V W ++ + R + A+++++ M A PN TL L A +S S
Sbjct: 308 PTTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAASPRVAS-- 365
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--------------AYK 107
VH++ + L + V ++ Y + G A +VF+ + AY
Sbjct: 366 -AVHAH-ALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYS 423
Query: 108 ----------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145
D ++W+ ++S A +G LQLF M +G +
Sbjct: 424 SGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAE 483
Query: 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD----MYGRAGLLEEAEA 201
+ +SAC + G D L KA+ + Y V + MYG+ G +++A+
Sbjct: 484 SMAVALSACPYAG--DLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKK 541
Query: 202 FIRE 205
R+
Sbjct: 542 AFRD 545
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 182/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW ++ GY + E+A+ VF+ M + + PNE+TL +VL CS++SAL F
Sbjct: 204 MPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGF 263
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + T+ LS G ++++MY KCGD+ A ++F+ + +D+I+W+ +ISG A
Sbjct: 264 GRQVHQWC-TKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++LF M GV P+ +TF+A+++AC H G+ D G+ F+ M VY I +
Sbjct: 323 HHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARV 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAG LE A + IR MP + S +G LLNA R+++N E + +L+
Sbjct: 383 DHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAGKLIE 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + ++N +A A++W D +++R ++ + K G SW+E+N
Sbjct: 443 QNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEIN 491
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 70/143 (48%), Gaps = 17/143 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNML--AYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
N +++ + GDV A +F + +++ SW+T++SGL+ +G +A +F M
Sbjct: 86 NTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPAR- 144
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH---YACVVDMYGRAGLL 196
+ +++ A++S +H G + A +E P ++ + +V Y +G +
Sbjct: 145 ---NSISWNAMVSCFAHAGDM-------CAAEECFEDAPDKENAVLWTAMVSGYMDSGHV 194
Query: 197 EEAEAFIREMPIEAEWSVWGALL 219
E+A F MP+ + S W A++
Sbjct: 195 EKAMQFFEAMPVRSLVS-WNAVV 216
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/290 (39%), Positives = 186/290 (64%), Gaps = 4/290 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++++VSWT++I G C EA+ F+EM + +PN TLV VLSAC+ I AL+ G+
Sbjct: 472 EKNIVSWTSIILGLRINNRCFEALFFFREM--IRRLKPNSVTLVCVLSACARIGALTCGK 529
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H++ + R +S + NA+++MYV+CG + A + F + + ++ SW+ +++G A
Sbjct: 530 EIHAH-ALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDH-EVTSWNILLTGYAER 587
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G A +LF M+ + V P++VTFI+++ ACS G+V +GL F +M Y I+P +H
Sbjct: 588 GKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKH 647
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YACVVD+ GR+G LEEA FI++MP++ + +VWGALLN+CRIH + E+ + + +
Sbjct: 648 YACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDD 707
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
SVG + L+SN +A +W+ ++R +R+ GL GCSW+EV ++
Sbjct: 708 TTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTV 757
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 107/202 (52%), Gaps = 5/202 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR++ SW ++GGYA+ G +EA+ ++ M +P+ T VL C + L
Sbjct: 167 MEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG-VKPDVYTFPCVLRTCGGMPNLVR 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ RY V NA+I MYVKCGDV A VF+ + +D ISW+ +ISG
Sbjct: 226 GREIHVHV-IRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYF 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
NG + L+LF +MI V PD +T ++I+AC G G I + T + P
Sbjct: 285 ENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPS 344
Query: 180 TQHYACVVDMYGRAGLLEEAEA 201
+ ++ MY GL+EEAE
Sbjct: 345 IHN--SLIPMYSSVGLIEEAET 364
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 14/238 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SW MI GY E G C E + +F M K +P+ T+ +V++AC +
Sbjct: 268 MPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYP-VDPDLMTMTSVITACELLGDDRL 326
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R + + N++I MY G + A VF+ +D++SW+ +ISG
Sbjct: 327 GRQIHGYV-LRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYE 385
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYEI 176
++AL+ + +M G+ PD++T ++SACS +D G+ L + Y I
Sbjct: 386 NCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSI 445
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
V + ++DMY + +++A +E W +++ RI N+ F+ +
Sbjct: 446 VANS-----LIDMYAKCKCIDKALEIFHST-LEKNIVSWTSIILGLRI--NNRCFEAL 495
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSWT MI GY ++A+ ++ ME + P+E T+ VLSACS + L G
Sbjct: 372 RDLVSWTAMISGYENCLMPQKALETYKMME-AEGIMPDEITIAIVLSACSCLCNLDMGMN 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ + L ++V N++I+MY KC + A+++F+ K+++SW+++I GL +N
Sbjct: 431 LHE-VAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINN 489
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYE---IVPQ 179
+AL F M I + P+ VT + ++SAC+ G + G I A+ T +P
Sbjct: 490 RCFEALFFFREM-IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN 548
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY R G +E A+ + ++ E + W LL
Sbjct: 549 A-----ILDMYVRCGRME--YAWKQFFSVDHEVTSWNILLTG 583
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 20 GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL 79
G + A+S M + + ++A V ++ C A G V+SY+S +S+S+L
Sbjct: 85 GNLDRAMSYLDSMHELRIPVEDDA-YVALIRLCEWKRARKEGSRVYSYVS----ISMSHL 139
Query: 80 ---VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
+GNA+++M+V+ G++ A VF + +++ SW+ ++ G A G +AL L+ M+
Sbjct: 140 SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRML 199
Query: 137 INGVFPDDVTFIALISACSHGGL 159
GV PD TF ++ C GG+
Sbjct: 200 WVGVKPDVYTFPCVLRTC--GGM 220
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V++ MIGGYA +EA+ +F +++ + +P++ T +N+L+AC++ +L +
Sbjct: 608 MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEW 666
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HS + LS ++L GNA+++ Y KCG A+ VF+ + +++ISW+ +I G A
Sbjct: 667 AKEIHSLVLKDGYLSDTSL-GNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCA 725
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G+ LQLF M + G+ PD VTF++L+SACSH GL+++G F +MS + I P
Sbjct: 726 QHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTI 785
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+E EA I+ MP +A +WGALL ACRIH N + + + +
Sbjct: 786 EHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLK 845
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + +S+ +A A W+ A K+R + + G+ K+ G SWIEV +
Sbjct: 846 LDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKL 897
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 14/230 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D++SWT MIGG A+ G EA++VFQ+M++ +PN T ++L+ACSS +AL +
Sbjct: 507 MVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG-LKPNRVTYTSILNACSSPAALDW 565
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + L+ V N ++NMY CG V A QVF+ + +D+++++ +I G A
Sbjct: 566 GRRIHQQV-IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYA 624
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+ G++AL+LF + G+ PD VT+I +++AC++ G ++ L+L
Sbjct: 625 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGY----- 679
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ T +V Y + G +A +M ++ W A++ C H
Sbjct: 680 -LSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQH 727
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 151/281 (53%), Gaps = 19/281 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+++W TMIGG AE G EEA ++ +M++ + PN+ T V +L+AC + +AL +G+
Sbjct: 409 RDLIAWNTMIGGLAEGGNWEEASEIYHQMQR-EGMMPNKITYVILLNACVNPTALHWGRE 467
Query: 64 VHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+HS + +D+SV N A+I+MY +CG + A +FN + KD+ISW+ +I GLA
Sbjct: 468 IHSRVVKDGFMFDISVQN----ALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL +F M G+ P+ VT+ ++++ACS +D G + + + +
Sbjct: 524 KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQ--QVIEAGLATD 581
Query: 181 QHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIR 235
H A +V+MY G +++A M + + + A++ H ++FD ++
Sbjct: 582 AHVANTLVNMYSMCGSVKDARQVFDRM-TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQ 640
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
+E + V T+ M N A + E A +I + + G
Sbjct: 641 EEGLKPDKV---TYINMLNACANSGSLEWAKEIHSLVLKDG 678
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 16/225 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + VVSWT +IGGYA+ G E A +FQ+M++ + PN T +NVL+A S +AL +
Sbjct: 305 METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQ-EGVVPNRITYINVLNAFSGPAALKW 363
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ VHS+I DL+V G A++ MY KCG QVF L +D+I+W+T+I
Sbjct: 364 GKTVHSHILNAGHESDLAV----GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 419
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST---VY 174
GLA G +A +++ M G+ P+ +T++ L++AC + + G + + ++
Sbjct: 420 GLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+I Q ++ MY R G +++A +M + + W A++
Sbjct: 480 DISVQN----ALISMYARCGSIKDARLLFNKM-VRKDIISWTAMI 519
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 52/282 (18%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R V SW M+ GY + G+ EEA+ + +EM++ A AT + +LS+C S SAL G+
Sbjct: 206 ERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLA-LGRATTMRLLSSCKSPSALECGR 264
Query: 63 YVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + R V+ V N ++NMY KCG + A +VF+ + K ++SW+ +I G A
Sbjct: 265 EIHVEAMKARLLFDVN--VANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYAD 322
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G A ++F M GV P+ +T+I +++A S G K TV+ +
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS-------GPAALKWGKTVHSHILNAG 375
Query: 182 HYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
H + +V MY + G ++ CR +
Sbjct: 376 HESDLAVGTALVKMYAKCGSYKD-----------------------CR---------QVF 403
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++LVN+ ++ T M A WE+A++I +++R G+
Sbjct: 404 EKLVNRDLIAWNT---MIGGLAEGGNWEEASEIYHQMQREGM 442
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 13/242 (5%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82
+ A+ V Q +++ + A N + +L C + L G+ VH +I ++ + N
Sbjct: 123 DRAMDVVQYLQQ-QGARVNSCDYMKMLKRCIEVKDLVAGREVHEHI-IQHCTVLDQYTVN 180
Query: 83 AVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140
A+INMY++CG + A QV+N L + + + SW+ ++ G G +AL+L M +G+
Sbjct: 181 ALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGL 240
Query: 141 FPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
T + L+S+C ++ G I +AM ++ C+++MY + G + EA
Sbjct: 241 ALGRATTMRLLSSCKSPSALECGREIHVEAMKA--RLLFDVNVANCILNMYAKCGSIHEA 298
Query: 200 EAFIREMPIEA--EWS-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF 256
+M ++ W+ + G + E+F ++QE V + T+ + N F
Sbjct: 299 REVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRI---TYINVLNAF 355
Query: 257 AG 258
+G
Sbjct: 356 SG 357
>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
Length = 830
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ +SW M+ GY G E+A+ +F +M + ++ +P + T ++AC + AL
Sbjct: 394 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAGAIAACGELGALKH 452
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ + SN GNA++ MY KCG V A VF ++ D +SW+ +IS L
Sbjct: 453 GRQLHAHL-VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALG 511
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL+LF M+ G+ PD ++F+ +++AC+H GLVD+G F++M + I P
Sbjct: 512 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGE 571
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYA ++D+ GR+G + EA I+ MP E S+W A+L+ CR + + E +L
Sbjct: 572 DHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFR 631
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SNT++ A RW DA ++R +R G+KK+ GCSWIEV I
Sbjct: 632 MIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 683
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV W MI GY + G C +A +F+ M K +E T +VLSAC++ G+
Sbjct: 261 KFDVV-WNAMISGYVQSGMCADAFELFRRMVSEK-VPLDEFTFTSVLSACANAGFFVHGK 318
Query: 63 YVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
VH I + + V NA++ +Y K G + IA ++F+ + KD++SW+T++SG
Sbjct: 319 SVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGY 378
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+GC +A+++F +M + +D++++ ++S HGGL + L LF M ++ P
Sbjct: 379 IDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA-EDVKPC 433
Query: 180 TQHYACVVDMYGRAGLLEEA---EAFIREMPIEAEWSVWGALLN 220
YA + G G L+ A + + EA S ALL
Sbjct: 434 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLT 477
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD V M+ +A AVSVF + + P++ + ++SA + L+
Sbjct: 122 RRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPH 181
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKC------------------------------ 91
+ S + + L V NA+I +Y+KC
Sbjct: 182 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 241
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GDV A VF + K + W+ +ISG +G A +LF M+ V D+ TF
Sbjct: 242 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 301
Query: 148 IALISACSHGGLVDQG 163
+++SAC++ G G
Sbjct: 302 TSVLSACANAGFFVHG 317
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 188/296 (63%), Gaps = 7/296 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SWT MI GY++ G C EA+ +F+EME +P+E TLV VLSAC+ + A
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALG-IKPDEVTLVAVLSACARLGAFDL 365
Query: 61 GQYV-HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS---WSTVI 116
G+ + H YI + + ++ AV++MY KCG + A+++F + K+M + ++++I
Sbjct: 366 GKRLYHQYIENGV-FNQNTILTAAVMDMYAKCGSIDSALEIFRRVG-KNMKTGFVFNSMI 423
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
+GLA +G G A+ +F +I G+ PD+VTF+ ++ AC H GL+++G LF++M Y I
Sbjct: 424 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 483
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
PQ +HY C+VD+ GR G LEEA +++MP EA +W ALL+ACR H N ++ + Q
Sbjct: 484 KPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQ 543
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+L+ + + L+SN A A++WE+A ++R + G++K G S+IE+ +I
Sbjct: 544 KLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAI 599
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 34/236 (14%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VS+ TMI GYAE E A+ +F EM+ + P+E T V + S CS ++ + G+
Sbjct: 175 RDLVSYNTMIKGYAEVNQPESALCLFGEMQNSG-ILPDEFTFVALFSVCSVLNEPNVGKQ 233
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------- 90
+H+ + SN L+ +A+++MY K
Sbjct: 234 IHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYAR 293
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG++ +A ++FN + +D+ISW+ +ISG + G +AL+LF M G+ PD+VT +A+
Sbjct: 294 CGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAV 353
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+SAC+ G D G L+ T A V+DMY + G ++ A R +
Sbjct: 354 LSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 140/278 (50%), Gaps = 11/278 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W TMI GY+ EA+ ++ M A PN T +L++C+ +S+L G V
Sbjct: 74 NLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEV 133
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS+I ++ V NA+I++Y G++ +A +F+ +D++S++T+I G A
Sbjct: 134 HSHI-IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE----IVPQT 180
AL LF M +G+ PD+ TF+AL S CS ++++ + + + VY+ I
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCS---VLNEPNVGKQIHAQVYKNLRSIDSNI 249
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ +VDMY + GL+ AE M + W +++ C R E+ + R+ +
Sbjct: 250 LLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV--CGYARCGEI-NVARKLFNH 306
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
V ++ M + ++ A + +A ++ E+ +G+K
Sbjct: 307 MHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK 344
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 187/294 (63%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SWTTM+ Y+ +E +++F ++ K P+E T+ V+SAC+ + AL+
Sbjct: 199 MPARDIISWTTMMNCYSRNKRYKEVIALFHDV-IDKGMIPDEVTMTTVISACAHLGALAL 257
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y+ + +DL V +G+++I+MY KCG + +A+ VF L K++ W+ +I GL
Sbjct: 258 GKEVHLYLVLQGFDLDV--YIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGL 315
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G +AL++F M + P+ VTFI++++AC+H G +++G F +M Y I PQ
Sbjct: 316 ATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQ 375
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ +AGLLE+A IR M +E +WGALLN C++H+N E+ Q L+
Sbjct: 376 VEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLM 435
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVNPSI 292
+ + G ++L+ N +A +RW + KIR ++ +G++K+ G SW+E+N ++
Sbjct: 436 VLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTV 489
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 41/163 (25%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WTTMI + G A +F EM E N AT
Sbjct: 137 MPERDVFAWTTMISAHVRDGDMASAGRLFDEM-----PEKNVATW--------------- 176
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
NA+I+ Y K G+ A +FN + +D+ISW+T+++ +
Sbjct: 177 ---------------------NAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYS 215
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N ++ + LF +I G+ PD+VT +ISAC+H G + G
Sbjct: 216 RNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALG 258
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V+ + +I G + E+A+ + M + P + +++ AC+ + +FG+ V
Sbjct: 40 NVLVFNALIRGCVHCCYSEQALVHYMHMLRNN-VMPTSYSFSSLIKACTLLVDSAFGEAV 98
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ ++ V +I Y GDVG + +VF+ + +D+ +W+T+IS +G
Sbjct: 99 HGHV-WKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGD 157
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
A +LF M V T+ A+I G + LF M +I+ T
Sbjct: 158 MASAGRLFDEMPEKNV----ATWNAMIDGYGKLGNAESAEFLFNQMPA-RDIISWTTMMN 212
Query: 185 CVVDMYGRAGLLEEAEAFIREM 206
C Y R +E A ++
Sbjct: 213 C----YSRNKRYKEVIALFHDV 230
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 181/295 (61%), Gaps = 10/295 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+P+R++V+W TMI Y++ C A+ + +EM +PN TL ++ SAC+ +++L
Sbjct: 237 IPERNLVTWNTMIAWYSQ---CNHLMALQLLREMN----LQPNCFTLTSITSACAGLASL 289
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
FGQ VH + R + + NA+++MY KCG + A ++FNM+ YKD +SW+++I+G
Sbjct: 290 RFGQQVHG-AALRRNYGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLSWTSMITG 348
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
MNG +++QLF+ MI GV PD V F+ LI AC+HGGLVD+G F++M++ Y + P
Sbjct: 349 YGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGGLVDEGWNFFRSMTSEYNLQP 408
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ Y CV ++ RAG L EA I MP + +VWGALL AC++H+N E+ +++
Sbjct: 409 NKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGALLGACKMHKNVELGRLAARKI 468
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ T+ L++N +A ++W + R +R +G +K+ G SWI+V I+
Sbjct: 469 IEINPDRAKTYVLLANIYAAGNKWGEYADTRRLLRGIGSRKEAGTSWIDVTDKIY 523
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+WT M+ GYA G A+ +F+ M PNE TL +VL+AC +A
Sbjct: 29 MPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAG-VGPNEFTLSSVLTACRGGAADGG 87
Query: 61 GQ--YVHSYISTRYDLSVSNLVGNAVINMYVKCGD-VGI--AIQVFNMLAY-KDMISWST 114
+ +H+ ++ R + V NA+I Y C + VG+ + ++F+ L + SW++
Sbjct: 88 CEPSSLHA-VAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTAASWTS 146
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKA 169
+++G + G + LQLF MI +G+ T + AC+ + G L L KA
Sbjct: 147 MVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIALHACASIANLCVGQQLHVLCLRKA 206
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + ++DMY L +A E+P E W ++
Sbjct: 207 FNANLTVANS------LIDMYCSCANLLDARRLFDEIP-ERNLVTWNTMI 249
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 107/224 (47%), Gaps = 24/224 (10%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
R SWT+M+ GY+ G + + +FQ M + E P ++ L AC+SI+ L GQ
Sbjct: 139 RTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIELSPFTCSIA--LHACASIANLCVGQ 196
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + R + + V N++I+MY C ++ A ++F+ + +++++W+T+I+ +
Sbjct: 197 QLH-VLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFDEIPERNLVTWNTMIAWYSQ- 254
Query: 123 GCGR-QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV---- 177
C ALQL M + P+ T ++ SAC+ GL + V+
Sbjct: 255 -CNHLMALQLLREMNLQ---PNCFTLTSITSACA-------GLASLRFGQQVHGAALRRN 303
Query: 178 --PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
Q +VDMY + G + A+ M + + S W +++
Sbjct: 304 YGKDLQMCNALVDMYSKCGSIANAKKMFNMMDYKDKLS-WTSMI 346
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A VF+ + +D+++W+ ++SG A NGC AL LF M+ GV P++ T +++
Sbjct: 17 GALRHARAVFDEMPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVL 76
Query: 152 SACSHGGLVDQG 163
+AC GG D G
Sbjct: 77 TAC-RGGAADGG 87
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 179/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSWT +I GY G +A+ VF+EM+ EP+EA++++VL AC+ + AL
Sbjct: 187 MPNRTIVSWTAIISGYTRIGSYIDALDVFREMQ-IAGIEPDEASIISVLPACAKLGALET 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H + + R L + NA+I MY KCG + A Q+F+ + +D+ISWST+I GLA
Sbjct: 246 GKWIHMFCA-RNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R+A+ +F M + P+ +TF+ L+SAC+H G ++GL+ F M + I P+
Sbjct: 305 NHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEI 364
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GRAG L +A + +MP++ + +WG+LL++CR H N E+ + L
Sbjct: 365 EHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEE 424
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A +W+D +++R +R +KK GCS IEVN
Sbjct: 425 LEPDDTGNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVN 473
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC-------- 91
P+E T V+ AC+ + + G+ VH+ ++ + NA+I+MY KC
Sbjct: 93 PDEFTFPFVVKACARLGLHNLGKQVHAQF-FKFGKKSHLITENALIDMYTKCDNLLDAHN 151
Query: 92 -----------------------GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
G + A +F+ + + ++SW+ +ISG G A
Sbjct: 152 LFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDA 211
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACV 186
L +F M I G+ PD+ + I+++ AC+ G ++ G + +F A + ++ +T +
Sbjct: 212 LDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNG---LLRRTCICNAL 268
Query: 187 VDMYGRAGLLEEAEAFIREMPIE--AEWSVW-GALLNACRIHRNDEMFDPIRQELVNKKG 243
++MY + G +++A +M WS G L N ++ +F+ ++Q + G
Sbjct: 269 IEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNG 328
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRR 274
+ TF + + A A WE+ D +++
Sbjct: 329 I---TFVGLLSACAHAGFWEEGLMYFDTMKK 356
>gi|326523581|dbj|BAJ92961.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 384
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 169/292 (57%), Gaps = 5/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WT M G A G ++AV+VF+ M A PNEATLV+VL A +S AL+
Sbjct: 94 MPERDVFAWTAMAWGLARGGSPQDAVAVFRAMLSDGGARPNEATLVSVLHAVASTGALAC 153
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HSY R L +VGNA+++ Y KCG+ +A QVF++L KD++SW+TV+ +A
Sbjct: 154 GKLLHSYALKR-GLGGEQVVGNALVDAYAKCGEARLAFQVFDLLPDKDLVSWATVMRAMA 212
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+ALQLFS+M+ GV PDD F++L+ AC H G VDQ L L AM +Y I PQ
Sbjct: 213 VHGRCREALQLFSMMLRQGVRPDDAVFLSLLYACCHAGQVDQTLHLLDAMGRIYGIAPQK 272
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR----Q 236
+HY C +D GRAG L+ R MP+E + GA + + + + R +
Sbjct: 273 EHYTCALDACGRAGRLDGVGEIFRRMPMECDQQALGAYCSHASASKANGVVAGERFLWKR 332
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L + + LMS + A A RW+D R+ + K C+WI+V
Sbjct: 333 FLAGEVAAERDAYVLMSKSLADAGRWDDVCSARERAAATRIDKTAACTWIQV 384
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 6/160 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
WT I A G EAV+ F M+ A PN TL +VL AC+ + +L G+ +H +
Sbjct: 2 WTKRISALARGGRAAEAVAEFSRMD----AAPNALTLASVLPACARLRSLGLGRAIHGFW 57
Query: 69 STRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
R +N +V NAV+++Y KCG + A ++F+ + +D+ +W+ + GLA G +
Sbjct: 58 LRRGGGPGANPIVDNAVLDVYAKCGALRSARRLFDGMPERDVFAWTAMAWGLARGGSPQD 117
Query: 128 ALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLIL 166
A+ +F M+ + G P++ T ++++ A + G + G +L
Sbjct: 118 AVAVFRAMLSDGGARPNEATLVSVLHAVASTGALACGKLL 157
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 180/288 (62%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
PK R VV+WT +IGG A+ G EA+ +F +M + PN T+ L AC+ + AL
Sbjct: 456 PKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALR 515
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ +H+Y+ S V N +I+MY K GDV A VF+ + ++ +SW+++++G
Sbjct: 516 FGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGY 575
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +ALQ+F M + PD VTF+ ++ ACSH G+VDQG+ F M+ + +VP
Sbjct: 576 GMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPG 635
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ RAG L+EA IR MP++ +VW ALL+ACR++ N E+ + +L+
Sbjct: 636 AEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLL 695
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G++ L+SN +A A W+D +IR ++ G+KK+ GCSW++
Sbjct: 696 ELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 743
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 36/194 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+VSW +++ Y + G A+ +F+ M + P+ +LVNVL AC+S+ A S G+ V
Sbjct: 213 DLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQV 272
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------------- 111
H Y + R L VGNAV++MY KCG + A +VF + KD++S
Sbjct: 273 HGY-ALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 331
Query: 112 ----------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
WS VI+G A G G +AL +F M++ G P+ VT ++
Sbjct: 332 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVS 391
Query: 150 LISACSHGGLVDQG 163
L+S C+ G + G
Sbjct: 392 LLSGCASAGTLLHG 405
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 123/241 (51%), Gaps = 24/241 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VV+W+ +I GYA+RG EA+ VF++M +EPN TLV++LS C+S L G+
Sbjct: 350 NVVTWSAVIAGYAQRGLGFEALDVFRQMLLCG-SEPNVVTLVSLLSGCASAGTLLHGKET 408
Query: 65 HSYISTRYDLSVSN-------LVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTV 115
H + + ++ L++ +V NA+I+MY KC A +F+++ KD +++W+ +
Sbjct: 409 HCH-AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVL 467
Query: 116 ISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQG-----LILFK 168
I G A +G +AL+LFS M+ N V P+ T + AC+ G + G +L
Sbjct: 468 IGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRN 527
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
+ V C++DMY ++G ++ A M S W +L+ +H
Sbjct: 528 RFESAMLFVAN-----CLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMTGYGMHGRG 581
Query: 229 E 229
E
Sbjct: 582 E 582
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 126/242 (52%), Gaps = 18/242 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I GF E+ + +++ M++ P+ T VL AC I + G VH+ +
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHAVV 171
Query: 69 -STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGC 124
++ ++ +V VGN +++MY +CG A QVF+ + + D++SW+++++ G
Sbjct: 172 FASGFEWNV--FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGD 229
Query: 125 GRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQ 181
+A+++F M + G+ PD V+ + ++ AC+ G +G + + S ++E V
Sbjct: 230 SIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGN 289
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDE---MFDPIRQE 237
VVDMY + G++EEA M ++ S W A++ +I R D+ +F+ IR+E
Sbjct: 290 ---AVVDMYAKCGMMEEANKVFERMKVKDVVS-WNAMVTGYSQIGRFDDALGLFEKIREE 345
Query: 238 LV 239
+
Sbjct: 346 KI 347
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
M +R+ VSWT+++ GY G EEA+ +F EM+K P+ T V VL ACS
Sbjct: 560 MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLV-PDGVTFVVVLYACS 611
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W+ MI Y + F EA+S F+EM + PN +++++L+ C++++ L +
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDY 351
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ + +D+ V +A+I MY+KCG++ A +VF+ KD++ W+++I+G
Sbjct: 352 GREVHAAMLRCSFDMDV--FAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G QAL +F M + G+ PD +T+I ++ACS+ G V +G +F +M+ I P
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPG 469
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C+VD+ GR+GL+EEA I+ MP+E + +WGAL+ ACR+HRN E+ + ++L+
Sbjct: 470 AEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLL 529
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S+ + RWEDA+K+R I L K GCSWIE + +
Sbjct: 530 ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRV 582
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VVS+T+++ GY G +A+ +FQ+M E N + +L ++ + +
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQM-----PERNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R + A+++ Y + G + A +F+ + ++++SW+ +ISG A NG
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
A +LF +M ++V++ A++ G V+ LF AM P+ AC
Sbjct: 222 NLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAM-------PEHPVAAC 270
Query: 186 VVDM--YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
M +G+ G+++ A+ +M E + W A++ A
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKA 307
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+WT M+ GY + G EA ++F EM K N + ++S + ++
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNL 223
Query: 61 GQYVHSYISTRYDLS-VSNLVG-------------------------NAVINMYVKCGDV 94
+ + + R ++S + LVG NA++ + + G V
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A VF + +D +WS +I N +AL F M+ GV P+ + I++++ C
Sbjct: 284 DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Query: 155 SHGGLVDQGLILFKAM 170
+ ++D G + AM
Sbjct: 344 AALAVLDYGREVHAAM 359
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y + A+ +F + +D+ S++ +ISGL++ RQ L + + + F
Sbjct: 52 NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR---RQTLPDAAAALASIPF 108
Query: 142 PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG--RAGLLEE 198
P V+F +L+ GL+ + LF+ M P+ H + V + G AG + E
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNE 161
Query: 199 AEAFIREMPIEAEWSVWGALLN----ACRIHRNDEMFD 232
A EMP + + W A+L+ A RI +FD
Sbjct: 162 ARRLFDEMP-DRDVVAWTAMLSGYCQAGRITEARALFD 198
>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31920-like [Cucumis sativus]
Length = 606
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 184/294 (62%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ V SW+ +I +A E +++F++M + E+ LVNVLSAC+ + A
Sbjct: 193 MEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHL 252
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ H S + +L+V+ V ++++MYVKCG + + +F + K+ +S+S +ISGL
Sbjct: 253 GRCAHGSLLKNITELNVA--VMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGL 310
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G GRQALQ+FS M+ G+ PDDVT+++++SACSH GLVD+GL LF M Y I P
Sbjct: 311 GLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPT 370
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
QHY C+VD+ GRAGLLEEA ++ MPI+A +W +LL+AC++H N ++ + + L
Sbjct: 371 MQHYGCMVDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLF 430
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + ++SN +A A +WE+A KIR ++ GL + G S +EV ++
Sbjct: 431 RLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVY 484
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 12/210 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ TMI GY E A+ ++ +M + +E EP+ T VL AC+ ++ + G +H ++
Sbjct: 100 FNTMIRGYVNNMNFENAIYLYNDMLQ-REVEPDNFTYPVVLKACARLAVIQEGMQIHGHV 158
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L V N++INMY KC D+ ++ +F + K + SWS +I+ A +
Sbjct: 159 -FKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAHASLAMWWEC 217
Query: 129 LQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEIVPQTQHY 183
L LF M G + ++ + ++SAC+H G G L K ++ + V +
Sbjct: 218 LALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELNVAVMTS--- 274
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
++DMY + G L++ + M + + S
Sbjct: 275 --LMDMYVKCGSLQKGLCLFQNMTRKNQLS 302
Score = 40.8 bits (94), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
+ L FG ++ S+ S S+++ ++ + + A +F L ++T
Sbjct: 53 VQILKFGLFLDSFCS-------SSVLATCALSDW---NSMDYACSIFQQLDEPTTFDFNT 102
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G N A+ L++ M+ V PD+ T+ ++ AC+ ++ +G+ + V+
Sbjct: 103 MIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQEGM---QIHGHVF 159
Query: 175 EIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ + Y +++MYG+ +E + A R M ++ S W A++ A
Sbjct: 160 KLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVAS-WSAIIAA 207
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 181/297 (60%), Gaps = 6/297 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VVSW +I GY + G EEAV +F + K + P T N+L+AC++++ L
Sbjct: 345 MMEKNVVSWNALIAGYTQNGENEEAVRLFLLL-KRESIWPTHYTFGNLLNACANLADLKL 403
Query: 61 GQYVHSYISTRYDLSVSN-----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G+ H+ I S VGN++I+MY+KCG V VF + +D++SW+ +
Sbjct: 404 GRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAM 463
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG G AL++F M+++G PD VT I ++SACSH GLV++G F +M T
Sbjct: 464 IVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELG 523
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P H+ C+VD+ GRAG L+EA I+ MP++ + VWG+LL AC++H N E+ +
Sbjct: 524 LAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVA 583
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++L+ ++ G + L+SN +A RW+D ++R ++R+ G+ K+ GCSWIE+ +
Sbjct: 584 EKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRV 640
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 121/209 (57%), Gaps = 4/209 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D SW M+ G+A+ EEA+ F +M +++ NE + + LSAC+ ++ L+
Sbjct: 111 MPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH-SEDFVLNEYSFGSALSACAGLTDLNM 169
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H+ IS +RY L V +G+A+++MY KCG V A + F+ +A ++++SW+++I+
Sbjct: 170 GIQIHALISKSRYLLDV--YMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCY 227
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL++F +M+ NGV PD++T +++SAC+ + +GL + + +
Sbjct: 228 EQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRND 287
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+VDMY + + EA MP+
Sbjct: 288 LVLGNALVDMYAKCRRVNEARLVFDRMPL 316
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 121/261 (46%), Gaps = 50/261 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSW ++I Y + G +A+ VF M EP+E TL +V+SAC+S SA+
Sbjct: 212 MAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNG-VEPDEITLASVVSACASWSAIRE 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------- 106
G +H+ + R ++GNA+++MY KC V A VF+ +
Sbjct: 271 GLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYA 330
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
K+++SW+ +I+G NG +A++LF L+ ++P TF
Sbjct: 331 RAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGN 390
Query: 150 LISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
L++AC +H ++ G F++ V + ++DMY + G++E+
Sbjct: 391 LLNACANLADLKLGRQAHTQILKHGF-WFQSGEESDIFVGNS-----LIDMYMKCGMVED 444
Query: 199 AEAFIREMPIEAEWSVWGALL 219
+ E +E + W A++
Sbjct: 445 G-CLVFERMVERDVVSWNAMI 464
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NAV+++ K G + A VF + D SW+ ++SG A + +AL+ F M
Sbjct: 89 NAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFV 148
Query: 142 PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
++ +F + +SAC+ GL D + I A+ + + + +VDMY + G++ A+
Sbjct: 149 LNEYSFGSALSACA--GLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQ 206
Query: 201 AFIREMPIEAEWSVWGALL 219
M + S W +L+
Sbjct: 207 RAFDGMAVRNIVS-WNSLI 224
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 176/288 (61%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW MI GYA+ G EEA+ +F +M K N + L LS+C+ I+AL
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKM-KRDGGILNRSALACALSSCAEIAALEL 423
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + GNA++ MY KCG + A VF + KD++SW+T+I+G A
Sbjct: 424 GKQLHGRL-VKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL LF M + + PDDVT + ++SACSH GLVD+G+ F +M Y I
Sbjct: 483 RHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANA 541
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L+EA ++ MP + + WGALL A RIH + E+ + +++
Sbjct: 542 KHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE 601
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + RW + ++R ++R G+KK G SW+E+
Sbjct: 602 MEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEI 649
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW M+ G+A+ GF EEA +F +M NE + +LSA +
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIED 202
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ D + + N ++ YV+ + A +F+ + +D ISW+ +I+G A
Sbjct: 203 ARRL---FDSKMDWEI--VSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYA 257
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A +LF + I VF + A++S G++D+ +F+ M E+
Sbjct: 258 QNGLLSEARRLFEELPIRDVF----AWTAMVSGFVQNGMLDEATRIFEEMPEKNEV---- 309
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++ Y ++ +E+A +MP
Sbjct: 310 -SWNAMIAGYVQSQQIEKARELFDQMP 335
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V W I Y +G CE A+SVF M + N ++S S + + V
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNA-----MISGYLSNNKFDCARKV 113
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R DL + N +++ YVK G++ A +FN + KD++SW+ ++SG A NG
Sbjct: 114 FEKMPDR-DL----ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F M++ +++++ L+SA G ++ LF + +EIV +
Sbjct: 169 VEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDS-KMDWEIVS----WN 219
Query: 185 CVVDMYGRAGLLEEAEAFIREMPI 208
C++ Y R L++A + MP+
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPV 243
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 37/212 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV +WT M+ G+ + G +EA +F+EM E NE + +++ +
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM-----PEKNEVSWNAMIAGYVQSQQIEK 326
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + +R S N ++ Y +CG++ A +F+ + +D ISW+ +ISG A
Sbjct: 327 ARELFDQMPSRNTSS-----WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
+G +AL LF M +G + +S+C+ HG LV G
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF----- 436
Query: 170 MSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA 199
QT + A ++ MYG+ G +EEA
Sbjct: 437 ---------QTGYIAGNALLAMYGKCGSIEEA 459
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 26/239 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SW M+ GY + G A ++F +M + +V+S + +S +
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-----------DVVSWNAMLSGFAQ 165
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V + V N + N +++ YV+ G + A ++F+ +++SW+ ++ G
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A LF M + D +++ +I+ + GL+ + LF+ + +
Sbjct: 226 VRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRD 276
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPI 234
+ +V + + G+L+EA EMP + E S W A++ + +I + E+FD +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-WNAMIAGYVQSQQIEKARELFDQM 334
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 22/159 (13%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I+ Y++ G A+ VFN + + ++++ +ISG N A ++F M
Sbjct: 64 NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------ 117
Query: 142 PDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLE 197
PD +++ ++S G + LF M P+ + ++ + + G +E
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM-------PEKDVVSWNAMLSGFAQNGFVE 170
Query: 198 EAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD 232
EA +M ++ E S W LL+A RI +FD
Sbjct: 171 EARKIFDQMLVKNEIS-WNGLLSAYVQNGRIEDARRLFD 208
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 190/296 (64%), Gaps = 6/296 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 59
MP R++VSW+ MIG YA+ +A+ +FQEM + + PN T+V+VL AC+ ++AL
Sbjct: 416 MPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALG 475
Query: 60 FGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G+ +H+YI R +DL VS L NA++ MY+KCG + +FN + + +++SW+++IS
Sbjct: 476 QGKVLHAYILRRGFDLLVSVL--NALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLIS 533
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G M+G GR++LQ+F MI G+ P+ +TF++++ ACSH GLV+QG LF++M Y +
Sbjct: 534 GYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESM-VEYNVT 592
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HYAC+VD+ GRAG L+EA I+ M I+ VWG+LL ACRIH + E +
Sbjct: 593 PRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSH 652
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
L + + + G + L+++ +A A + +++ + L+K GCSWIEV ++
Sbjct: 653 LFDLEPRNAGNYVLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLY 708
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 83/172 (48%), Gaps = 9/172 (5%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC-----SSIS 56
P +++ W M+ A EEA++ +M + + + + L AC S +
Sbjct: 311 PVKNIFVWNAMLKALALADHGEEALTCLADMGRLG-VPVDSYSYAHGLKACIAASASHLP 369
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
A + + +H++ + R + V +I+ Y K G V A +VF + ++++SWS +I
Sbjct: 370 ASARVREMHAH-AIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMI 428
Query: 117 SGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLIL 166
A N A+Q+F M+ + + P+ +T ++++ AC+ + QG +L
Sbjct: 429 GCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVL 480
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 29/196 (14%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P + T ++L A + + VH + + +I Y + A Q
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC----- 154
VF+ K++ W+ ++ LA+ G +AL + M GV D ++ + AC
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365
Query: 155 -----------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
H + +G L ++T ++D Y + G++ AE
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVATT------------LIDCYAKLGIVSYAERVF 413
Query: 204 REMPIEAEWSVWGALL 219
MP + W A++
Sbjct: 414 TSMP-DRNLVSWSAMI 428
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 186/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ +GF EEA++ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 166 MPERDLISWTAMINGFVNKGFHEEALAWFREMQISG-VKPDYVAIIAALNACTNLGALSF 224
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A
Sbjct: 225 GLWVHRYVMSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFA 283
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M PD VTF ++ACSH GLV++GL F+ M + Y I P+
Sbjct: 284 ANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRI 343
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL ACR H N+ + + + + L
Sbjct: 344 EHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLT 403
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 404 DLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 453
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 107/237 (45%), Gaps = 39/237 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQ 62
+ VSWT+ I G EA F +M + EPN T + +LS C + S G
Sbjct: 35 NTVSWTSRITLLTRNGRLAEAAKEFSDM-RLAGVEPNHITFIAILSGCGDFPSGSEALGD 93
Query: 63 YVHSYISTRYDLSVSN-LVGNAVINMYVK------------------------------- 90
+H Y + + L ++ +VG A+I MY K
Sbjct: 94 LLHGY-ACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMR 152
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G V A ++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA
Sbjct: 153 SGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAA 212
Query: 151 ISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++AC++ G + GL + + MS ++ + + ++D+Y R G +E A +M
Sbjct: 213 LNACTNLGALSFGLWVHRYVMSQDFKNNVRVSN--SLIDLYCRCGCVEFARQVFDKM 267
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 34/157 (21%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-- 155
IQ N ++ +SW++ I+ L NG +A + FS M + GV P+ +TFIA++S C
Sbjct: 25 IQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDF 84
Query: 156 -----------HG-----GLVDQGLILFKAMSTVYEIVPQTQHYACV------------- 186
HG GL +++ A+ +Y + + CV
Sbjct: 85 PSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWN 144
Query: 187 --VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+D Y R+G ++ A +MP E + W A++N
Sbjct: 145 TMIDGYMRSGQVDNAAKMFDKMP-ERDLISWTAMING 180
>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
Length = 929
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV W ++I A+ G A+ + +EM + E N T+V+ L ACS ++AL
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLAALRQ 618
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R L N + N++I+MY +CG + + ++F+++ +D++SW+ +IS
Sbjct: 619 GKEIHQFI-IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 677
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ LF G+ P+ +TF L+SACSH GL+++G FK M T Y + P
Sbjct: 678 MHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV 737
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ YAC+VD+ RAG E FI +MP E +VWG+LL ACRIH N ++ + + L
Sbjct: 738 EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFE 797
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + LM+N ++ A RWEDA KIR ++ G+ K GCSWIEV +
Sbjct: 798 LEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 849
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 5/221 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +VVSWT +I G + G+ EA+SVF++M + +PN T+ + +SAC+++S L G+
Sbjct: 324 KPNVVSWTALIAGSEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGR 382
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y +L LVGN++++ Y KC V +A + F M+ D++SW+ +++G A+
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A++L S M G+ PD +T+ L++ + G L F+ M ++ + P T
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTT 501
Query: 183 YACVVDMYGRA---GLLEEAEAFIREMPIEAEWSVWGALLN 220
+ + G+ L +E ++ IE V AL++
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALIS 542
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 117/227 (51%), Gaps = 16/227 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+++W ++ G+ + G + A+ FQ M + +PN T+ L+AC + L G+ +
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMH-SMGMDPNTTTISGALAACGQVRNLKLGKEI 521
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ R + +S VG+A+I+MY C + +A VF+ L+ +D++ W+++IS A +G
Sbjct: 522 HGYV-LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
AL L M ++ V + VT ++ + ACS + QG +++ + +
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-------KEIHQFIIRCGLDT 633
Query: 185 C------VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
C ++DMYGR G ++++ MP + + W +++ +H
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMH 679
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V SWT ++ Y G EE + +F M + P+ V ACS +
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRV 208
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V+ Y+ + ++ V ++++M++KCG + IA + F + +KD+ W+ ++SG
Sbjct: 209 GKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++AL+ S M ++GV PD VT+ A+IS + G ++ F M + + P
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+ ++ + G EA + R+M +E
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEG 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 16/203 (7%)
Query: 14 GGYAER-GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY 72
GG R G A + M+ T E E ++L C + L G VH+ +
Sbjct: 61 GGSVHRNGVLNNAAMLLSSMDLTNPDECIE-IYASILQKCRKLYNLRLGFQVHAQLVVN- 118
Query: 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
+ V +G+ ++ +Y + G V A ++F+ ++ +++ SW+ ++ G + ++LF
Sbjct: 119 GVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLF 178
Query: 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYACV---- 186
LM+ GV PD F + ACS L ++ VY+ + + +CV
Sbjct: 179 YLMVNEGVRPDHFVFPKVFKACSE-------LKNYRVGKDVYDYMLSIGFEGNSCVKGSI 231
Query: 187 VDMYGRAGLLEEAEAFIREMPIE 209
+DM+ + G ++ A F E+ +
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFK 254
>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
[Oryza sativa Japonica Group]
Length = 808
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ +SW M+ GY G E+A+ +F +M + ++ +P + T ++AC + AL
Sbjct: 396 MPYKNDLSWMVMVSGYVHGGLSEDALKLFNQM-RAEDVKPCDYTYAGAIAACGELGALKH 454
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ + SN GNA++ MY KCG V A VF ++ D +SW+ +IS L
Sbjct: 455 GRQLHAHL-VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALG 513
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL+LF M+ G+ PD ++F+ +++AC+H GLVD+G F++M + I P
Sbjct: 514 QHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGE 573
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYA ++D+ GR+G + EA I+ MP E S+W A+L+ CR + + E +L
Sbjct: 574 DHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFR 633
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SNT++ A RW DA ++R +R G+KK+ GCSWIEV I
Sbjct: 634 MIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 685
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV W MI GY + G C +A +F+ M K +E T +VLSAC++ G+
Sbjct: 263 KFDVV-WNAMISGYVQSGMCADAFELFRRMVSEK-VPLDEFTFTSVLSACANAGFFVHGK 320
Query: 63 YVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
VH I + + V NA++ +Y K G + IA ++F+ + KD++SW+T++SG
Sbjct: 321 SVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGY 380
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+GC +A+++F +M + +D++++ ++S HGGL + L LF M ++ P
Sbjct: 381 IDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRA-EDVKPC 435
Query: 180 TQHYACVVDMYGRAGLLEEA---EAFIREMPIEAEWSVWGALLN 220
YA + G G L+ A + + EA S ALL
Sbjct: 436 DYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLT 479
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD V M+ +A AVSVF + + P++ + ++SA + L+
Sbjct: 124 RRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPH 183
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKC------------------------------ 91
+ S + + L V NA+I +Y+KC
Sbjct: 184 CTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVG 243
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GDV A VF + K + W+ +ISG +G A +LF M+ V D+ TF
Sbjct: 244 YVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTF 303
Query: 148 IALISACSHGGLVDQG 163
+++SAC++ G G
Sbjct: 304 TSVLSACANAGFFVHG 319
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 183/282 (64%), Gaps = 5/282 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T+I YA G EA+S++ +M ++ +PN ATLV VLSACS +++L G+
Sbjct: 832 RDIVTWNTLISSYAHCGHFAEALSLYDKM-VLEDLKPNSATLVXVLSACSHLASLEEGEK 890
Query: 64 VHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+YI+ +++ ++S + A+I+MY KCG + + ++FN + +D+I+W+ +ISG M+
Sbjct: 891 VHNYINGGKFEFNLS--IATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMH 948
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G R A++ F M + P+ +TF+A++SAC+H GLV +G LF M Y + P +H
Sbjct: 949 GDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQD-YSVAPNLKH 1007
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GR+G L+EAEA + MPI + VWGALL++C+IH EM I + +
Sbjct: 1008 YACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSD 1067
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ G + ++SN ++ +WE+A K R ++ G++KKTG S
Sbjct: 1068 VENDGYYVMISNMYSSIGKWEEAEKARGIMKERGVRKKTGWS 1109
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 99/199 (49%), Gaps = 5/199 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+V W + G ++ G E + + E PN TL AC ++ AL G+
Sbjct: 532 RNVEFWRRHMNGESKMGL--ECLCEMHRIGGDGE-RPNFRTLEGGFQACGNLGALLEGRC 588
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + + S +V +++++MY KCG+ A + F + KD+ISW+++IS + G
Sbjct: 589 LHGLV-VKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMG 647
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ + +F M+++G++PD + ++S+ S+ V + + + + Q
Sbjct: 648 WATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQN 707
Query: 184 ACVVDMYGRAGLLEEAEAF 202
A ++ MY + G L+ AE F
Sbjct: 708 A-LLSMYCKFGFLKLAEKF 725
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 38/200 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W MI GY G A+ FQ+ME++ A+PN T + VLSAC+ +
Sbjct: 930 MHERDVITWNVMISGYGMHGDARSAIEXFQQMEES-SAKPNGLTFLAVLSACAHAGLVKE 988
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+Y ++ K D +A ++ ++ ++ L
Sbjct: 989 GKY-----------------------LFGKMQDYSVA---------PNLKHYACMVDLLG 1016
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ++A L M I+ PD + AL+S+C ++ G+ + A + V
Sbjct: 1017 RSGNLQEAEALVLSMPIS---PDGGVWGALLSSCKIHNEIEMGIRI--AKHAIXSDVEND 1071
Query: 181 QHYACVVDMYGRAGLLEEAE 200
+Y + +MY G EEAE
Sbjct: 1072 GYYVMISNMYSSIGKWEEAE 1091
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SWT+MI Y+ G+ E + +F EM P+ + +LS+ S+ + +
Sbjct: 631 KDIISWTSMISAYSRMGWATECIDMFWEM-LVSGIYPDGIVISCMLSSFSNSMRVFEAKA 689
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H I R+ ++ +V NA+++MY K G + +A + F + ++ +W+ ++SG G
Sbjct: 690 FHGLIIRRH-YTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIG 748
Query: 124 CGRQALQLFSLMIINGV 140
+ + LF M G+
Sbjct: 749 LIMKCIGLFREMQCLGI 765
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 183/289 (63%), Gaps = 3/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ VSW +I GYA +G EEA+++F M++ + P E T +LS+CSS+ L G++
Sbjct: 239 KNEVSWNALIAGYARKGEGEEALALFVRMQR-EGYRPTEFTYSALLSSCSSMGCLEQGKW 297
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+++ + + VGN +++MY K G + A +VF+ L D++S ++++ G A +G
Sbjct: 298 LHAHL-MKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHG 356
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G++A Q F MI G+ P+D+TF+++++ACSH L+D+G F M Y I P+ HY
Sbjct: 357 LGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRK-YNIEPKVSHY 415
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
A +VD+ GRAGLL++A++FI EMPIE ++WGALL A ++H+N EM Q +
Sbjct: 416 ATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDP 475
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT L++N +A A RWED K+R ++ G+KK+ CSW+EV S+
Sbjct: 476 SYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSV 524
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 121/210 (57%), Gaps = 11/210 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSWT+MI GYA+ +A+ +F M + AEPNE TL +++ C +++ +
Sbjct: 135 MPHRDMVSWTSMITGYAQNDRASDALLLFPRM-LSDGAEPNEFTLSSLVKCCGYMASYNC 193
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ +Y + VG+++++MY +CG +G A+ VF+ L K+ +SW+ +I+G A
Sbjct: 194 GRQIHA-CCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYA 252
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
G G +AL LF M G P + T+ AL+S+CS G ++QG L K+ +
Sbjct: 253 RKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGY 312
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
V T ++ MY ++G + +AE ++
Sbjct: 313 VGNT-----LLHMYAKSGSIRDAEKVFDKL 337
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 9/184 (4%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVG 95
EP+ +L C+ + L G+ VH ++ + ++DL ++ N+++ MY +CG +
Sbjct: 71 EPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDL----VIQNSLLFMYARCGSLE 126
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F+ + ++DM+SW+++I+G A N AL LF M+ +G P++ T +L+ C
Sbjct: 127 GARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCG 186
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+ + G + A Y + +VDMY R G L EA ++ + E S W
Sbjct: 187 YMASYNCGRQI-HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS-W 244
Query: 216 GALL 219
AL+
Sbjct: 245 NALI 248
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVVS +M+ GYA+ G +EA F EM + EPN+ T ++VL+ACS L G+
Sbjct: 339 KVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFG-IEPNDITFLSVLTACSHARLLDEGK 397
Query: 63 Y 63
+
Sbjct: 398 H 398
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 185/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW T+I G+ + G + A F+ M+++ +P++ T +L+AC+S AL+
Sbjct: 569 MPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESG-VKPDQITFTGLLNACASPEALTE 627
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I T L +VG +I+MY KCG + A VF+ L K++ SW+++I+G A
Sbjct: 628 GRRLHALI-TEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL+LF M GV PD +TF+ +SAC+H GL+ +GL F++M + I P+
Sbjct: 687 QHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRM 745
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAGLL EA FI +M ++ + +WGALL AC++H + E+ + + Q+ +
Sbjct: 746 EHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLE 805
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + ++SN +A A W++ K+R + G+ KK G SWIEV+
Sbjct: 806 LDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVD 854
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 119/202 (58%), Gaps = 9/202 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV SW ++GGY + EEA + ++M + +P++ T V +L+AC+ +
Sbjct: 165 MPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG-VKPDKYTFVYMLNACADAKNVDK 223
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + S I + +D + VG A+INM++KCG V A++VFN L +D+I+W+++I+GL
Sbjct: 224 GGELFSLILNAGWDTDL--FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGL 281
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A + +QA LF +M GV PD V F++L+ AC+H ++QG + M E+
Sbjct: 282 ARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMK---EVGLD 338
Query: 180 TQHY--ACVVDMYGRAGLLEEA 199
T+ Y ++ MY + G +E+A
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDA 360
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 145/280 (51%), Gaps = 7/280 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD+++WT+MI G A ++A ++FQ ME+ + +P++ V++L AC+ AL
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEE-EGVQPDKVAFVSLLKACNHPEALEQ 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + L VG A+++MY KCG + A++VFN++ ++++SW+ +I+G A
Sbjct: 325 GKRVHARMK-EVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A F+ MI +G+ P+ VTF++++ ACS + QG + + I
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
A ++ MY + G L +A + + W A++ A H + Q L+
Sbjct: 444 VRTA-LLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALL- 500
Query: 241 KKGVS--VGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
K+G+ TF + N D E ++ I R G +
Sbjct: 501 KEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 131/247 (53%), Gaps = 14/247 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K++VV+W MI Y + + AV+ FQ + K + +P+ +T ++L+ C S AL
Sbjct: 468 ISKQNVVAWNAMITAYVQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCKSPDALEL 526
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V S I R + NA+++M+V CGD+ A+ +FN + +D++SW+T+I+G
Sbjct: 527 GKWVQSLI-IRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFV 585
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY---EIV 177
+G + A F +M +GV PD +TF L++AC+ + +G L ++ ++V
Sbjct: 586 QHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVV 645
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDP 233
T ++ MY + G +++A +P + +S W +++ H E+F
Sbjct: 646 VGTG----LISMYTKCGSIDDAHLVFHNLPKKNVYS-WTSMITGYAQHGRGKEALELFCQ 700
Query: 234 IRQELVN 240
++QE V
Sbjct: 701 MQQEGVK 707
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 14/243 (5%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ T ++L C L G+ +H++I + + N +I+MY KCG+ A Q+
Sbjct: 103 HRQTYSSLLQLCIKHKNLGDGERIHNHIKFS-KIQPDIFMWNMLISMYAKCGNTNSAKQI 161
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + KD+ SW+ ++ G + +A +L M+ +GV PD TF+ +++AC+ V
Sbjct: 162 FDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNV 221
Query: 161 DQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218
D+G LF S + T + +++M+ + G +++A +P + W ++
Sbjct: 222 DKGGELF---SLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLP-RRDLITWTSM 277
Query: 219 LNACRIHRNDE----MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274
+ HR + +F + +E V V+ F + + E ++ ++
Sbjct: 278 ITGLARHRQFKQACNLFQVMEEEGVQPDKVA---FVSLLKACNHPEALEQGKRVHARMKE 334
Query: 275 MGL 277
+GL
Sbjct: 335 VGL 337
>gi|125540362|gb|EAY86757.1| hypothetical protein OsI_08137 [Oryza sativa Indica Group]
Length = 493
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 173/282 (61%), Gaps = 1/282 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ +W +MI G + CEEA+ VF +M PNE LV+ +SAC+ + +
Sbjct: 196 MPSRNAATWGSMITGLLQSDHCEEALRVFSDMVACGVV-PNEPALVSTVSACTQLRWMEH 254
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y + ++S ++ A+++MY KCG + A++VF + +++ SW+++I+GLA
Sbjct: 255 GTWVHGYAERELNGAMSAVLATAIVDMYGKCGSIRDAVRVFAAMPVRNIYSWNSMIAGLA 314
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG RQAL LF M + GV P+D+TFI L+SACSH GLVD+G LF M + I P
Sbjct: 315 MNGSERQALSLFWKMQLAGVRPNDITFIGLLSACSHSGLVDEGRWLFYKMVNHFGIQPVP 374
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GR+G + EA F++ MP+E +WGAL AC+IH E+ + + ++L+
Sbjct: 375 EHYGLMVDLLGRSGHVREAVDFVKSMPVEPHPGLWGALAGACKIHGEVELGEEVAKKLIE 434
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+ + L+SN +A ++RW+D +R ++ + K TG
Sbjct: 435 LEPQHGSRYILLSNIYATSNRWDDMANVRRILKDRKVPKGTG 476
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 58/223 (26%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WTTM+ G+A G E A F M + NV+S
Sbjct: 138 DVVTWTTMVTGHANAGDVERARWFFDAMPEK-----------NVVS-------------- 172
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
N ++ Y + G + A ++F+ + ++ +W ++I+GL +
Sbjct: 173 ----------------WNTMLGAYARAGMLPKARKLFDRMPSRNAATWGSMITGLLQSDH 216
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI--------LFKAMSTVYEI 176
+AL++FS M+ GV P++ ++ +SAC+ ++ G L AMS V
Sbjct: 217 CEEALRVFSDMVACGVVPNEPALVSTVSACTQLRWMEHGTWVHGYAERELNGAMSAVLA- 275
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMYG+ G + +A MP+ +S W +++
Sbjct: 276 -------TAIVDMYGKCGSIRDAVRVFAAMPVRNIYS-WNSMI 310
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W+ MI Y + F EA+S F+EM + PN +++++L+ C++++ L +
Sbjct: 293 MCERDDGTWSAMIKAYEQNEFLMEALSTFREM-LWRGVRPNYPSVISILTVCAALAVLDY 351
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+ + +D+ V +A+I MY+KCG++ A +VF+ KD++ W+++I+G
Sbjct: 352 GREVHAAMLRCSFDMDV--FAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGY 409
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G QAL +F M + G+ PD +T+I ++ACS+ G V +G +F +M+ I P
Sbjct: 410 AQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPG 469
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C+VD+ GR+GL+EEA I+ MP+E + +WGAL+ ACR+HRN E+ + ++L+
Sbjct: 470 AEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLL 529
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S+ + RWEDA+K+R I L K GCSWIE + +
Sbjct: 530 ELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRV 582
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 102/218 (46%), Gaps = 24/218 (11%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VVS+T+++ GY G +A+ +FQ+M E N + +L ++ + +
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIRLFQQM-----PERNHVSYTVLLGGLLDAGRVNEARRLF 166
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ R + A+++ Y + G + A +F+ + ++++SW+ +ISG A NG
Sbjct: 167 DEMPDR-----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
A +LF +M ++V++ A++ G V+ LF AM P+ AC
Sbjct: 222 NLARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAM-------PEHPVAAC 270
Query: 186 VVDM--YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
M +G+ G+++ A+ +M E + W A++ A
Sbjct: 271 NAMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKA 307
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 31/196 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV+WT M+ GY + G EA ++F EM K N + ++S + ++
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR-----NVVSWTAMISGYAQNGEVNL 223
Query: 61 GQYVHSYISTRYDLS-VSNLVG-------------------------NAVINMYVKCGDV 94
+ + + R ++S + LVG NA++ + + G V
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A VF + +D +WS +I N +AL F M+ GV P+ + I++++ C
Sbjct: 284 DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343
Query: 155 SHGGLVDQGLILFKAM 170
+ ++D G + AM
Sbjct: 344 AALAVLDYGREVHAAM 359
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 18/158 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y + A+ +F + +D+ S++ +ISGL++ RQ L + + + F
Sbjct: 52 NALLAGYFRNRLPDAALGLFRRMPSRDLASYNALISGLSLR---RQTLPDAAAALASIPF 108
Query: 142 PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG--RAGLLEE 198
P V+F +L+ GL+ + LF+ M P+ H + V + G AG + E
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNE 161
Query: 199 AEAFIREMPIEAEWSVWGALLN----ACRIHRNDEMFD 232
A EMP + + W A+L+ A RI +FD
Sbjct: 162 ARRLFDEMP-DRDVVAWTAMLSGYCQAGRITEARALFD 198
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 187/291 (64%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W MI GYA+ G +EA+++F M + + A P++ TLV VLSAC+++ AL G
Sbjct: 282 KDVVAWNAMITGYAQNGMSKEAIALFHSM-RQEGASPDKITLVGVLSACAAVGALELGTE 340
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ +Y S R L + VG A+++MY KCGD+ A+QVF L K+ +W+ +I GLA NG
Sbjct: 341 LDAYASHR-GLYGNVYVGTALVDMYSKCGDLDKAVQVFGKLPCKNEATWNALICGLAFNG 399
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A++ F +M G+ PDD+TFI ++SAC H GL+ G F ++++ ++I+P+ +H
Sbjct: 400 RGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKDGRRWFNSLTSEFQIIPKIEH 459
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ RAG LEEA F+ ++P +A+ + GALL ACR +N E+ + + ++ +
Sbjct: 460 YSCMVDLLARAGHLEEAWDFVEKIPGKADAVMLGALLAACRKCKNVEVSERVINRIMQLE 519
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A +DR +D+ K+R +R G+ K GCSW+EV+ +
Sbjct: 520 PSNSWNYVVSSKIYASSDRLDDSAKMRGLMRERGVSKIPGCSWVEVSGKVL 570
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 133/236 (56%), Gaps = 5/236 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVSW M+ Y G + +F++M PNE T+ VL+AC L
Sbjct: 177 IPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVL 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ ++ + ++ V +LVG+A++ MY KCG++ A +VF+ +A+KD+++W+ +I+G A
Sbjct: 237 GRWLEEWVRS-AEIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYA 295
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++A+ LF M G PD +T + ++SAC+ G ++ G L A ++ +
Sbjct: 296 QNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGALELGTEL-DAYASHRGLYGNV 354
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+VDMY + G L++A ++P + E + W AL+ C + N + IRQ
Sbjct: 355 YVGTALVDMYSKCGDLDKAVQVFGKLPCKNE-ATWNALI--CGLAFNGRGHEAIRQ 407
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A+ +F M + P+ TL +L A + F + H+ + R L + +++
Sbjct: 100 ALRLFLRMLRAA-LRPDAYTLPFLLLAAARAPEPPFARSAHALL-CRLGLQAHDHTVHSL 157
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPD 143
+ MY GD A +VF+ + +D++SW+ ++ G ++F MI G V P+
Sbjct: 158 VTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAPN 217
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+VT +++AC G + G L + + + EI + + +V MY + G + EA
Sbjct: 218 EVTVAVVLAACRDAGDLVLGRWLEEWVRSA-EIEVGSLVGSALVGMYEKCGEMTEAR 273
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ +W +I G A G EA+ F+ M + P++ T + VLSAC L
Sbjct: 380 LPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAGLLKD 439
Query: 61 GQYVHSYISTRYDL 74
G+ + +++ + +
Sbjct: 440 GRRWFNSLTSEFQI 453
>gi|293331391|ref|NP_001168246.1| uncharacterized protein LOC100382009 [Zea mays]
gi|223946981|gb|ACN27574.1| unknown [Zea mays]
gi|413932359|gb|AFW66910.1| hypothetical protein ZEAMMB73_426189 [Zea mays]
Length = 499
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/282 (38%), Positives = 175/282 (62%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ +W+ MI G G C EA+ +F +M + PNE LV+V+SAC+ + +L
Sbjct: 203 MPTRNAATWSCMISGLVLSGRCWEALGLFGDMVHSSGIVPNEPALVSVVSACAQMRSLEH 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH+Y ++S ++ +A+I+MY KCG + AI+VF + +++ SW+ +I+GLA
Sbjct: 263 GAWVHAYAEQELQGAMSVVLASAIIDMYGKCGGIHSAIRVFAAMPMRNIYSWNAMITGLA 322
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG RQAL L M + GV P+D+TFI L+SAC+H GLV++G LF +M + I P
Sbjct: 323 MNGGERQALSLLWKMQMVGVQPNDITFIGLLSACTHSGLVNEGRRLFDSMIEDFGIQPFP 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY +VD+ GR+G + EA F++ MP+E +WGAL +AC++H E+ + + ++L+
Sbjct: 383 QHYGLMVDLIGRSGRVMEALYFVKSMPVEPHPGLWGALASACKMHGKVELGEEVAKKLIE 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+ + L+SN + +RW+D +R ++R + K TG
Sbjct: 443 LEPRHGSRYILLSNLYGSVNRWDDMASVRKILKRRKVPKGTG 484
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 43/217 (19%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WTTM+ G+A G A F M + NV+S
Sbjct: 145 DVVTWTTMVTGHASAGGLGRARHFFDAMSER-----------NVVS-------------- 179
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
NA+++ Y + G + A +F+ + ++ +WS +ISGL ++G
Sbjct: 180 ----------------WNAMLSAYARAGMLTEARDLFDAMPTRNAATWSCMISGLVLSGR 223
Query: 125 GRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL LF M+ +G+ P++ ++++SAC+ ++ G + +
Sbjct: 224 CWEALGLFGDMVHSSGIVPNEPALVSVVSACAQMRSLEHGAWVHAYAEQELQGAMSVVLA 283
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ ++DMYG+ G + A MP+ +S W A++
Sbjct: 284 SAIIDMYGKCGGIHSAIRVFAAMPMRNIYS-WNAMIT 319
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 170/289 (58%), Gaps = 1/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW T+I GYA+ G EA+ V+ ME+ +E PN+ T V++L A S + AL G
Sbjct: 158 KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR 217
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + L VG +I+MY KCG + AI +F + K+ + W+ +IS ++G
Sbjct: 218 IHGQV-IKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHG 276
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL+LF M V PD +TF++L+SACSH GLV F M Y I P +HY
Sbjct: 277 DGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHY 336
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD++GRAG LE A FI++MPI+ + S WGALLNACRIH N E+ + L
Sbjct: 337 GCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDS 396
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+VG + L+SN +A +WE + +R R GL+K G S I +N +
Sbjct: 397 ENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKV 445
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 140/252 (55%), Gaps = 14/252 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD SW MI GY + G EA+ + EM + + + + T+ +VL C+ + +
Sbjct: 55 MPARDRGSWNAMISGYCQNGNAAEALDIADEM-RLEGVKMDAITVASVLPVCAQVGDILS 113
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ ++ L V NA+INMY K G +G A +VF +L KD++SW+T+I+G A
Sbjct: 114 GKLIHLYV-IKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYA 171
Query: 121 MNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIV 177
NG +A++++ LM + + P+ T+++++ A SH G + QG+ + + + +Y V
Sbjct: 172 QNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDV 231
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDP 233
C++DMYG+ G L++A + ++P + W A+++ +H + E+F
Sbjct: 232 FVG---TCLIDMYGKCGKLDDAISLFYQVPRKNSVP-WNAMISCYGVHGDGEKALELFRE 287
Query: 234 IRQELVNKKGVS 245
++ E V ++
Sbjct: 288 MKAERVKPDHIT 299
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
V ++++MY + G VG A ++F+ + +D SW+ +ISG NG +AL + M +
Sbjct: 30 FVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLE 89
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLIL 166
GV D +T +++ C+ G + G ++
Sbjct: 90 GVKMDAITVASVLPVCAQVGDILSGKLI 117
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 177/289 (61%), Gaps = 23/289 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW TMIG E +P+ T+ +L AC+S+SAL G+
Sbjct: 416 KDIISWNTMIG----------------------ELKPDSRTMACILPACASLSALERGKE 453
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI R S V NA++++YVKCG +G+A +F+M+ KD++SW+ +ISG M+G
Sbjct: 454 IHGYI-LRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHG 512
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ F+ M G+ PD+V+FI+++ ACSH GL++QG F M + I P+ +HY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R G L +A FI +PI + ++WGALL CRI+ + E+ + + + + +
Sbjct: 573 ACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP 632
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A++WE+ ++R++I + GL+K GCSWIE+ +
Sbjct: 633 ENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKV 681
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 116/213 (54%), Gaps = 17/213 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E + ++++M + + AT+++VL C++ LS G+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLEIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKA 272
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS I + ++ ++ N +++MY KCGD+ A++VF + ++++SW+++I+G +
Sbjct: 273 VHSLAIKSTFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---- 178
G A++L M GV D V +++ AC+ G +D G V++ +
Sbjct: 331 GRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNG-------KDVHDYIKANNM 383
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
++ + C ++DMY + G ++ A + M ++
Sbjct: 384 ESNLFVCNALMDMYTKCGSMDGANSVFSTMVVK 416
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 38/222 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT+MI GY G + A+ + Q+MEK + + + ++L AC+ +L
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEK-EGVKLDVVATTSILHACARSGSLDN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++ + V NA+++MY KCG + A VF+ + KD+ISW+T+I L
Sbjct: 371 GKDVHDYIKAN-NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELK 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYE 175
PD T ++ AC+ +++ G IL S+
Sbjct: 430 ---------------------PDSRTMACILPACASLSALERGKEIHGYILRNGYSS--- 465
Query: 176 IVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+H A +VD+Y + G+L A +P + W+V
Sbjct: 466 ----DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/325 (21%), Positives = 138/325 (42%), Gaps = 64/325 (19%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R V + I + + G E A+ + +K+ E T +VL C+ +L+ G+
Sbjct: 64 RQVTDYNAKILHFCQLGNLENAMELVCMCQKS---ELETKTYSSVLQLCAGSKSLTDGKK 120
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDV----------------------------- 94
VHS I + +++V ++G ++++Y CGD+
Sbjct: 121 VHSIIKSN-NVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIG 179
Query: 95 ---------------GI-------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
GI A ++F+ L +D+ISW+++ISG NG + L+++
Sbjct: 180 DFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIY 239
Query: 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYG 191
M+ G+ D T I+++ C++ G + G + A+ + +E + ++DMY
Sbjct: 240 KQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFE--RRINFSNTLLDMYS 297
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFA 250
+ G L+ A +M E W +++ R R+D ++Q + K+GV + A
Sbjct: 298 KCGDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIRLLQQ--MEKEGVKLDVVA 354
Query: 251 LMS--NTFAGADRWEDANKIRDEIR 273
S + A + ++ + D I+
Sbjct: 355 TTSILHACARSGSLDNGKDVHDYIK 379
>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K++++SW MI Y EAVS+F +ME+ +P+ T+ ++L AC +SAL
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLSALFL 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI + +L + L+ NA+++MY KCG + A VF+ + +D++SW++++S
Sbjct: 325 GRRLHKYIE-KGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYG 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LF+ M+ +G PD + F++++SACSH GL+DQG F+ M+ Y IVP+
Sbjct: 384 RSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRI 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+VD++GRAG +EEA +FI++MP+E VWGALL+ACR+H ++ L
Sbjct: 444 EHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQ 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A W+D +R ++++G+KK G S +E+N +
Sbjct: 504 LAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++VV + MI Y EA+S+FQ M P+ T VL ACS + L G
Sbjct: 99 EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA-FNPDHYTFPCVLKACSGLDNLRVGL 157
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH I + L + +GNA++ MY KCG + A +V + + Y+D++SW+++++G A +
Sbjct: 158 QVHDAI-VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQS 216
Query: 123 GCGRQALQL 131
G AL++
Sbjct: 217 GQFDDALEI 225
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HS I L + + ++ Y G+ +A +F+ K+++ ++ +I N
Sbjct: 57 LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL +F +M+ PD TF ++ ACS GL D + + + ++ T +
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACS--GL-DNLRVGLQVHDAIVKVGLDTNLF 173
Query: 184 A--CVVDMYGRAGLLEEAEAFIREMP 207
+V MYG+ G L EA + +MP
Sbjct: 174 IGNALVAMYGKCGCLREARKVLDQMP 199
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW T+I G+A G+ AV +F EM P+EAT+V +SA I L+
Sbjct: 156 MPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMVGFVSAVRDIGLLAI 215
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ R + S+ +G A+++MY +CG +G A F + K++ W+++I+G A
Sbjct: 216 GKSAHGYV-LRREFSLDGPLGVALVSMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFA 274
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL+LF M G+ P+ VTF+A++SACSHGGLVD+G F M ++ I P
Sbjct: 275 AHGQPENALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGFKYFDLMRSM-GIRPMI 333
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG L+EA +P + + +W +LL ACR H N EM + +L
Sbjct: 334 QHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACRSHGNVEMAELTASKLAE 393
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K ++ L+SNT+A A++WED+ + R + + KK G SWIE++ S+
Sbjct: 394 AKPSHGSSYVLLSNTYARAEQWEDSKRTRRRMEEHRVAKKPGLSWIEIDGSV 445
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGV 140
N +++ ++ GD+ A +VF + ++ +SW+T+ISG A NG A+ LF + + G+
Sbjct: 134 NVLLDALIRDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGL 193
Query: 141 FPDDVTFIALISACSHGGLV-----DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
PD+ T + +SA GL+ G +L + S + +V MY R G
Sbjct: 194 APDEATMVGFVSAVRDIGLLAIGKSAHGYVLRREFSLDGPL------GVALVSMYTRCGS 247
Query: 196 LEEAEA-FIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVSVGTFA 250
+ A + F+ E W +L+ H E +F +RQ + GV TF
Sbjct: 248 MGAAHSCFLSVTTKNVEH--WTSLIAGFAAHGQPENALRLFVEMRQVGIEPNGV---TFV 302
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLK---KKTGC 283
+ + + ++ K D +R MG++ + GC
Sbjct: 303 AVLSACSHGGLVDEGFKYFDLMRSMGIRPMIQHYGC 338
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 175/292 (59%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
MP+RDVVSW T+I GY G C+EA+ +F++M + PN T+ VLSAC+ L
Sbjct: 208 MPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCL 267
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G +VH YI + ++ + + +I+MY KCG + A+QVF K D+ SW+TVI
Sbjct: 268 ETGIWVHLYID-KNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVIC 326
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G L++FS+M +G+ PDDVTF+ +++AC+HGGLVD+GL F +M Y I
Sbjct: 327 GLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRIT 386
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D+ GR G L EA I+ MP++ +WGA L+AC++H + E+ + E
Sbjct: 387 PKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAE 446
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +MS+ +A A W + R E+ + +KK GCS + ++
Sbjct: 447 VTRLDPDDPWARVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVALD 498
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 120/262 (45%), Gaps = 39/262 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC----SSIS 56
MP + +V+ T M +A G +A+ +FQ+M P+ L VL+AC S +
Sbjct: 72 MPNQSLVARTAMARAHAVSGQAAQALDLFQDM-IADGFMPDNVALAVVLAACHGAGSCTA 130
Query: 57 ALSFGQYVHSYI-------------------STRYDLSV-----------SNLVGNAVIN 86
S G+ VH++I R +++V S + N +++
Sbjct: 131 RRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVH 190
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING---VFPD 143
YV+ D+ A ++F + +D++SW+TVI+G + G ++AL LF M+ V P+
Sbjct: 191 QYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSSCTVHPN 250
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
T ++SAC+ G ++ G+ + + ++ C++DMY + G +++A
Sbjct: 251 GPTMSTVLSACAGAGCLETGIWVHLYIDK-NQMNDNGTLDRCLIDMYAKCGSIDKALQVF 309
Query: 204 REMPIEAEWSVWGALLNACRIH 225
+ P + + W ++ +H
Sbjct: 310 EKAPGKRDLYSWTTVICGLAMH 331
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
L+ LS + + LS +H + L + A+++ Y G G A +F+ +
Sbjct: 14 LIKSLSPATPRAHLS-ASGIHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEM 72
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+ +++ + + A++G QAL LF MI +G PD+V +++AC G
Sbjct: 73 PNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFMPDNVALAVVLAACHGAG 126
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 188/294 (63%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVV+WT M+ GYA+ GF +EA+++F+ M++ + +P++ T +VL++CSS + L
Sbjct: 310 LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQ-QGIKPDKMTFTSVLTSCSSPAFLQE 368
Query: 61 GQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H + Y+L V + +A+++MY KCG + A VFN ++ +++++W+ +I+G
Sbjct: 369 GKRIHQQLVHAGYNLDV--YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGC 426
Query: 120 -AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A +G R+AL+ F M G+ PD VTF +++SAC+H GLV++G F++M Y I P
Sbjct: 427 CAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKP 486
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY+C VD+ GRAG LEEAE I MP SVWGALL+ACR+H + E + + +
Sbjct: 487 MVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENV 546
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + +S+ +A A R+EDA K+R + + + K+ G SWIEV+ +
Sbjct: 547 LKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKV 600
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 144/265 (54%), Gaps = 14/265 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++VV+WT +I GYA++G + A+ + + M++ E PN+ T ++L C++ +AL
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQA-EVAPNKITFASILQGCTTPAALEH 267
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH YI + Y + V N++I MY KCG + A ++F+ L ++D+++W+ +++G
Sbjct: 268 GKKVHRYIIQSGYGREL--WVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGY 325
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVP 178
A G +A+ LF M G+ PD +TF +++++CS + +G + + + Y +
Sbjct: 326 AQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC-----RIHRNDEMFDP 233
Q + +V MY + G +++A +M E W A++ C R E FD
Sbjct: 386 YLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCREALEYFDQ 442
Query: 234 IRQELVNKKGVSVGTFALMSNTFAG 258
++++ + V+ T L + T G
Sbjct: 443 MKKQGIKPDKVTF-TSVLSACTHVG 466
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R++VSWT MI + EA ++ M K +P++ T V++L+A ++ L GQ
Sbjct: 111 RNIVSWTAMIEAFVAGNKNLEAFKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH I L + VG +++ MY KCGD+ A +F+ L K++++W+ +I+G A G
Sbjct: 170 VHMEI-VEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQG 228
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH- 182
AL+L M V P+ +TF +++ C+ ++ G V+ + Q+ +
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHG-------KKVHRYIIQSGYG 281
Query: 183 -----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
++ MY + G LEEA ++P + W A++ ++ +DE + R+
Sbjct: 282 RELWVVNSLITMYCKCGGLEEARKLFSDLP-HRDVVTWTAMVTGYAQLGFHDEAINLFRR 340
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 87/173 (50%), Gaps = 5/173 (2%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C+ + +L G+ VH+ I + + + + N +++MY KCG + A +VF+ + +
Sbjct: 53 LLQECARLRSLEQGREVHAAI-LKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDR 111
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-IL 166
+++SW+ +I +A + + M + G PD VTF++L++A ++ L+ G +
Sbjct: 112 NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171
Query: 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + E+ P+ +V MY + G + +A +P E W L+
Sbjct: 172 MEIVEAGLELEPRVG--TSLVGMYAKCGDISKARVIFDRLP-EKNVVTWTLLI 221
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 182/298 (61%), Gaps = 8/298 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D+VSW +I GY + G EEA+ +F+ M K + P T N+L+A ++++ L
Sbjct: 350 IKQKDIVSWNALIAGYTQNGENEEALGLFR-MLKRESVCPTHYTFGNLLNASANLADLEL 408
Query: 61 GQYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
G+ HS++ ++ + VGN++I+MY+KCG V ++VF + KD +SW+T
Sbjct: 409 GRQAHSHV-VKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNT 467
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G A NG G +AL+LF M+ +G PD VT I + ACSH GLV++G F +M+ +
Sbjct: 468 MIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEH 527
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
++P HY C+VD+ GRAG LEEA+ I MP + + VW +LL+AC++HRN + +
Sbjct: 528 GLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYV 587
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+++ S G + L++N ++ RW DA +R +RR G+ K+ GCSWI++ ++
Sbjct: 588 AEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNV 645
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 21/248 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D SW +MI G+A+ EEA+ F M + + N+ + + LSACS + L
Sbjct: 116 MPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRD-DFVLNDYSFGSGLSACSRLKDLKL 174
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H IS ++Y L V +G+ +I+ Y KCG VG A +VF+ + K+++SW+ +I+
Sbjct: 175 GAQIHGLISKSKYSLDV--FMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCY 232
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL+ F M G PD+VT +++SAC+ L FK ++ V +
Sbjct: 233 EQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACA-------TLAAFKEGVQIHARVVK 285
Query: 180 TQHYA-------CVVDMYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHRNDE 229
+ + +VDMY + G + EA MP+ +E ++ + +
Sbjct: 286 SDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARS 345
Query: 230 MFDPIRQE 237
MF I+Q+
Sbjct: 346 MFATIKQK 353
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 50/261 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VVSW +I Y + G EA+ F M + +P+E TL +V+SAC++++A
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELG-FKPDEVTLASVVSACATLAAFKE 275
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--------------- 105
G +H+ + ++GNA+++MY KCG V A VF+ +
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYA 335
Query: 106 ----------------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KD++SW+ +I+G NG +AL LF ++ V P TF
Sbjct: 336 KSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGN 395
Query: 150 LISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
L++A +H +V G F++ V + ++DMY + G +EE
Sbjct: 396 LLNASANLADLELGRQAHSHVVKHGF-RFQSGEEPDIFVGNS-----LIDMYMKCGSVEE 449
Query: 199 AEAFIREMPIEAEWSVWGALL 219
M +E + W ++
Sbjct: 450 GLRVFENM-VEKDHVSWNTMI 469
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
L++V C L + + V +S R S N++I+ ++ G V + +F+++
Sbjct: 65 LIDVYGKCG---YLDYARKVFDRMSERNVFSF-----NSIISTLMRWGFVDESAWLFSLM 116
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
KD SW+++I+G A + +AL F M + +D +F + +SACS L
Sbjct: 117 PEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSR-------L 169
Query: 165 ILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLL 196
K + ++ ++ ++++ + ++D Y + GL+
Sbjct: 170 KDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLV 207
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
+ + +L C + + + VH I T + V + N +I++Y KCG + A +
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEV--FIQNRLIDVYGKCGYLDYARK 80
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
VF+ ++ +++ S++++IS L G ++ LFSLM
Sbjct: 81 VFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLM 116
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 181/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+WT MI GY + G +EA+ +F+ M T EPN TL VLS C+S++ L +
Sbjct: 285 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDY 343
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H + R L S+ V NA+I MY + G A ++F+ + + K+ I+W+++I L
Sbjct: 344 GKQIHCR-AIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 402
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ LF M+ GV PD +T++ ++SACSH G V++G + + ++I P+
Sbjct: 403 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 462
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ RAGL EA+ FIR MP+E + WG+LL+ACR+H+N E+ + ++L+
Sbjct: 463 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 522
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G ++ ++N ++ RW DA +I + ++K+TG SW + I
Sbjct: 523 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 575
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 37/263 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW MI GY + G +A+ +F M P+E T+ +VLSAC+++ +
Sbjct: 150 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 209
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ VH+YI R +++ ++ V NA+I+
Sbjct: 210 GKQVHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEG 268
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A ++F ++ +D+++W+ +I G NG +A+ LF MI G P+ T
Sbjct: 269 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 328
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++S C+ +D G I +A+ ++ E + ++ MY R+G A ++
Sbjct: 329 AAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQV 386
Query: 207 PIEAEWSVWGALLNACRIHRNDE 229
E W +++ A H E
Sbjct: 387 CWRKETITWTSMIVALAQHGQGE 409
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 35/232 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT M+ G G EA+ +M P + TL NVLS+C+ A +
Sbjct: 18 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 76
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------- 106
G+ VHS++ + L V N+V+NMY KCGD A VF +
Sbjct: 77 GRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 135
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFI 148
+ ++SW+ +I+G NG +AL+LFS M+ + + PD+ T
Sbjct: 136 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 195
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++SAC++ G V G + A E+ +Q ++ Y ++G +E A
Sbjct: 196 SVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKSGSVENAR 246
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 181/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+WT MI GY + G +EA+ +F+ M T EPN TL VLS C+S++ L +
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDY 449
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H + R L S+ V NA+I MY + G A ++F+ + + K+ I+W+++I L
Sbjct: 450 GKQIHCR-AIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ LF M+ GV PD +T++ ++SACSH G V++G + + ++I P+
Sbjct: 509 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 568
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ RAGL EA+ FIR MP+E + WG+LL+ACR+H+N E+ + ++L+
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G ++ ++N ++ RW DA +I + ++K+TG SW + I
Sbjct: 629 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 37/263 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW MI GY + G +A+ +F M P+E T+ +VLSAC+++ +
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ VH+YI R +++ ++ V NA+I+
Sbjct: 316 GKQVHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEG 374
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A ++F ++ +D+++W+ +I G NG +A+ LF MI G P+ T
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++S C+ +D G I +A+ ++ E + ++ MY R+G A ++
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSN--AIITMYARSGSFPWARRMFDQV 492
Query: 207 PIEAEWSVWGALLNACRIHRNDE 229
E W +++ A H E
Sbjct: 493 CWRKETITWTSMIVALAQHGQGE 515
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 35/232 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT M+ G G EA+ +M P + TL NVLS+C+ A +
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------- 106
G+ VHS++ + L V N+V+NMY KCGD A VF +
Sbjct: 183 GRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNT 241
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFI 148
+ ++SW+ +I+G NG +AL+LFS M+ + + PD+ T
Sbjct: 242 HLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++SAC++ G V G + A E+ +Q ++ Y ++G +E A
Sbjct: 302 SVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKSGSVENAR 352
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 181/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+WT MI GY + G +EA+ +F+ M T EPN TL VLS C+S++ L +
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM-ITCGPEPNSYTLAAVLSVCASLACLDY 449
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H + R L S+ V NA+I MY + G A ++F+ + + K+ I+W+++I L
Sbjct: 450 GKQIHCR-AIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVAL 508
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A+ LF M+ GV PD +T++ ++SACSH G V++G + + ++I P+
Sbjct: 509 AQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE 568
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ RAGL EA+ FIR MP+E + WG+LL+ACR+H+N E+ + ++L+
Sbjct: 569 MSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLL 628
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G ++ ++N ++ RW DA +I + ++K+TG SW + I
Sbjct: 629 SIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 37/263 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW MI GY + G +A+ +F M P+E T+ +VLSAC+++ +
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ VH+YI R +++ ++ V NA+I+
Sbjct: 316 GKQVHAYI-LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEG 374
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A ++F ++ +D+++W+ +I G NG +A+ LF MI G P+ T
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++S C+ +D G I +A+ ++ E + ++ MY R+G A ++
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSN--AIITMYARSGSFPWARRMFDQV 492
Query: 207 PIEAEWSVWGALLNACRIHRNDE 229
E W +++ A H E
Sbjct: 493 CWRKETITWTSMIVALAQHGQGE 515
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 35/232 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT M+ G G EA+ +M P + TL NVLS+C+ A +
Sbjct: 124 MPERDAVSWTVMVVGLNRAGRFGEAIKTLLDM-TADGFTPTQFTLTNVLSSCAVTQAGAV 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------------- 106
G+ VHS++ + L V N+V+NMY KCGD A VF +
Sbjct: 183 GRKVHSFV-VKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNT 241
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFI 148
+ ++SW+ +I+G NG +AL+LFS M+ + + PD+ T
Sbjct: 242 HLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTIT 301
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++SAC++ G V G + A E+ +Q ++ Y ++G +E A
Sbjct: 302 SVLSACANLGNVRIGKQV-HAYILRTEMAYNSQVTNALISTYAKSGSVENAR 352
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 186/291 (63%), Gaps = 5/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ MI Y++ EEAV +F+ M + + EP A LV+VLSAC+ + L
Sbjct: 335 MPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIE-EGVEPINAGLVSVLSACAQLGCLDL 393
Query: 61 GQYVHS--YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++++ IS + L+V+ +GNA I++Y KCGD A ++F +A ++++SW+++I
Sbjct: 394 GRWIYDNYVISGKAVLTVN--LGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMA 451
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A++G + L+LF + + PD++TF+ L+SACSH GLV +G FK M +Y I P
Sbjct: 452 HAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEP 511
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+++HYAC++D+ G+ GLLEEA + MP+E + + WGALLNACR++ N E+ + +L
Sbjct: 512 KSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKL 571
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
V + G + LMS +A ++W+ +R +R G+KK GCS IEV+
Sbjct: 572 VQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVD 622
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 35/261 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSWTT++ GYA RG +EA VF M +PNE TLV V+SA + L+F
Sbjct: 202 MPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAF 261
Query: 61 GQYVHSYI-------STRYDLSVSNLVGN-----------------------AVINMYVK 90
G+ V+ Y+ S + ++ ++ G ++N Y K
Sbjct: 262 GRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAK 321
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CGD+ A ++F+ + ++ +SWS +I+ + +A++LF MI GV P + +++
Sbjct: 322 CGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSV 381
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SAC+ G +D G ++ + V +D+Y + G + A EM A
Sbjct: 382 LSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEM---A 438
Query: 211 EWSV--WGALLNACRIHRNDE 229
E +V W +++ A +H E
Sbjct: 439 ERNVVSWNSMIMAHAVHGQSE 459
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 111/217 (51%), Gaps = 9/217 (4%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSS---ISALSFGQYVH 65
TM+ + A ++F+ + +E+ P +A TLV + A +S + S G+ VH
Sbjct: 106 ATMMRAFLRARLPSRASALFRRV--IRESLPADARTLVFAIKAAASEHEHHSPSGGEGVH 163
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
++ S LVGNA+++ Y + A +F+ + +D++SW+T++ G A G
Sbjct: 164 CVALKWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLA 223
Query: 126 RQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F M++ G+ P++VT +A++SA GL+ G ++++ ++ +
Sbjct: 224 DEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVAD-GGVGRSVNLEN 282
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DM+G+ G A M ++ +S W ++NA
Sbjct: 283 ALIDMFGKFGCAASAREVFDSMAVKDVYS-WTTMVNA 318
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 182/291 (62%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSWT +I G+ + G EEA+ +F +M+ + EPN T +L AC+ +A
Sbjct: 305 IPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQ-LGDIEPNSFTFGGLLGACADANAFQK 363
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H + L +VG+AV++MY KCG++G A++ F + +D+ SW+ +I G A
Sbjct: 364 GRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYA 423
Query: 121 MNGCGRQALQLFSLMII---NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
NG G +AL+L++ M++ +G+ P++VTF+ ++ ACSH GL+ +G FK M + I
Sbjct: 424 QNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIK 483
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P +HY C+VD+ GRAGLL+EAEA I +PI+ + +WGALL AC++H + +M +
Sbjct: 484 PTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEH 543
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L + + + L++N++ W +A +IR+ + G++K GCSW+E+
Sbjct: 544 LYTNEPRNSSNYVLLANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEI 594
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +V+W MI Y++ G ++++ +F+++ + + +E T VL+ ++ +
Sbjct: 204 MPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXR-EGISADEYTYAIVLNEFAARWQVFE 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VHS I R NA++N+Y KCG V A ++F + +D++SW+ +I G
Sbjct: 263 AMQVHSLIIER-GFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFL 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A+ LF M + + P+ TF L+ AC+ +G + +
Sbjct: 322 QSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADV 381
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ VVDMY + G + +A +EMP E + + W ++
Sbjct: 382 VVGSAVVDMYSKCGEMGDALRAFQEMP-ERDIASWNGII 419
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
KRD SW ++ G + E ++ F +M + P+ T ++ C L FGQ
Sbjct: 109 KRDCHSWNIVLSGCVKNHKLGEGLTHFMKM-RCSSVRPDNFTYAIIIPCCD----LGFGQ 163
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+ I + + +G ++ MY + G++G A +VF+ + + +++W+ +IS +
Sbjct: 164 QVHADI-VKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKY 222
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ--- 179
G G +++ LF + G+ D+ T+ +++ + V F+AM I+ +
Sbjct: 223 GRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQV------FEAMQVHSLIIERGFC 276
Query: 180 TQHYA--CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+ + +V++Y + G + A E+P + W+V
Sbjct: 277 SDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTV 315
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ Y K G V AI++F+ + +D SW+ V+SG N + L F M + V
Sbjct: 85 NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVR 144
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
PD+ T+ +I C G + K S + + ++ MY G + +A
Sbjct: 145 PDNFTYAIIIPCCDLGFGQQVHADIVKVCSDLDAFIGTN-----LLRMYAEVGEIGDARK 199
Query: 202 FIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVG--TFALMSNTFAG 258
MP W A+++ + R D+ RQ + ++G+S T+A++ N FA
Sbjct: 200 VFDGMPSRG-LVTWNAMISCYSKYGRGDKSIGLFRQ--LXREGISADEYTYAIVLNEFAA 256
Query: 259 ADRWE 263
RW+
Sbjct: 257 --RWQ 259
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 186/293 (63%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
M ++D V+W +MI +++ G +EA+ +F++M E K N T+ LSAC+S+ A+
Sbjct: 505 MSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKY---NNITISAALSACASLPAI 561
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+G+ +H ++ + + +A+I+MY KCG++ +A++VF + K+ +SW+++IS
Sbjct: 562 YYGKEIHG-VTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISA 620
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++++ L M G PD VTF+ALISAC+H GLV++G+ LF+ M+ Y I P
Sbjct: 621 YGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAP 680
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +H+AC+VD+Y R+G L++A FI +MP + + +WGALL+ACR+HRN E+ D QEL
Sbjct: 681 RMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQEL 740
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ G + LMSN A A RW+ +K+R ++ + K G SW++VN S
Sbjct: 741 FKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 4/221 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV +TMI GY G EEA+ +F+ + + + +PN T+ +VL C+S++AL GQ +
Sbjct: 408 DVVIGSTMISGYVLNGMSEEALQMFRYLLE-QCIKPNAVTIASVLPGCASMAALPLGQQI 466
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ R V +A+++MY KCG + ++ +F ++ KD ++W+++IS + NG
Sbjct: 467 HGYV-LRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGK 525
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL LF M + G+ +++T A +SAC+ + G + ++ I +
Sbjct: 526 PQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEI-HGVTIKGPIKADIFAES 584
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G LE A MP + E S W ++++A H
Sbjct: 585 ALIDMYAKCGNLELALRVFEFMPDKNEVS-WNSIISAYGAH 624
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 128/238 (53%), Gaps = 7/238 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D+V+W MI G + G EA +F +M+++ A P+ TLV++L A + ++ L
Sbjct: 303 MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSG-ARPDSITLVSLLPALTDLNGLKQ 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI R +++ + +A++++Y KC DV +A +++ D++ ST+ISG
Sbjct: 362 GKEVHGYI-VRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYV 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
+NG +ALQ+F ++ + P+ VT +++ C+ + G I + YE
Sbjct: 421 LNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCY 480
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
+ + ++DMY + G L+ + +M + E + W +++++ + + E D RQ
Sbjct: 481 VE--SALMDMYAKCGRLDLSHYIFLKMSQKDEVT-WNSMISSFSQNGKPQEALDLFRQ 535
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 88/163 (53%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD V W M+ G + G + AV +F+ M + EPN ATL LS C++ + L
Sbjct: 202 IPERDCVLWNVMMDGCIKAGDVDGAVRLFRNM-RASGCEPNFATLACFLSVCATDADLLS 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS ++ + L V N ++ MY KC + A ++F ++ D+++W+ +ISG
Sbjct: 261 GAQLHS-LAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCV 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG +A LF M +G PD +T ++L+ A + + QG
Sbjct: 320 QNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG 362
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 8/219 (3%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVH 65
+ W +I G+ G AV + +M A P+ TL V+ +C+++ A+S G+ VH
Sbjct: 105 LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVH 164
Query: 66 SYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
T + ++N VG+A++ MY G +G A F+ + +D + W+ ++ G G
Sbjct: 165 R---TARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAG 221
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
A++LF M +G P+ T +S C+ + G L +++ + P+
Sbjct: 222 DVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQL-HSLAVKCGLEPEVAVA 280
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ MY + L++A MP + + W +++ C
Sbjct: 281 NTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGC 318
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 186/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W+ +I Y + F EA+S F+EM PN +++++L+ C++++ L +
Sbjct: 293 MCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIG-IRPNYPSVISILTVCAALAVLDY 351
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH + R +D+ + + +A+I MY+KCG++ A +VF+M KD++ W+++I+G
Sbjct: 352 GREVHGAMLRRSFDMDIYAV--SALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGY 409
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL +F M + G+ PD +T+I ++ACS+ G V +G +F +M T I P
Sbjct: 410 AQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPG 469
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAGL++EA I+ MP+E + +WGAL+ ACR+H+N E+ + ++L+
Sbjct: 470 LEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLL 529
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S+ + + RWEDA+ +R I L K GCSWIE + +
Sbjct: 530 ELEPGNAGPYVLLSHIYTSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRV 582
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 34/227 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK-------------TKEAEPNEA-TLV 46
MP +DVV+WT M+ GY + G +EA ++F EM K + + N A L
Sbjct: 169 MPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLF 228
Query: 47 NVLSACSSIS--ALSFGQYVHSYISTRYDL--SVSNLVGNAVINMYVKCGDVGI---AIQ 99
V+ + +S A+ FG I +L ++ + A M V G G+ A
Sbjct: 229 EVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKS 288
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF+ + +D +WS +I N +AL F M+ G+ P+ + I++++ C+ +
Sbjct: 289 VFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAV 348
Query: 160 VDQGLILFKAM------STVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+D G + AM +Y + + ++ MY + G L++A+
Sbjct: 349 LDYGREVHGAMLRRSFDMDIYAV-------SALITMYIKCGNLDKAK 388
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 26/219 (11%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VVS+T+++ GY G +A+ +F++M E N + +L + + +
Sbjct: 112 VVSFTSLLRGYVRHGLLADAIQLFRQM-----PERNHISYTVLLGGFLDAGRVDEARKLF 166
Query: 66 SYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
++ ++V A+++ Y + G V A +F+ + ++++SW+ ++SG A NG
Sbjct: 167 D------EMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQ 220
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
A +LF +M ++V++ A++ G ++ LF AM P A
Sbjct: 221 VNLARKLFEVMPER----NEVSWTAMLFGYIQAGRIEDAEELFNAM-------PDHPLAA 269
Query: 185 C--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
C ++ +G+ G+++ A++ M E + W A++ A
Sbjct: 270 CNGMIVGFGQQGMVDAAKSVFDRM-CERDDGTWSAIIKA 307
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 23/210 (10%)
Query: 1 MPKRDVVSWTTMIGGYA-ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP RD+ S+ +I G + R +A + T P+ + ++L L+
Sbjct: 74 MPTRDLASYNALISGLSLRRHTLPDAAAAL----ATIPYPPSVVSFTSLLRGYVRHGLLA 129
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + R +S + L+G ++ G V A ++F+ + KD+++W+ ++SG
Sbjct: 130 DAIQLFRQMPERNHISYTVLLGG-----FLDAGRVDEARKLFDEMPAKDVVAWTAMLSGY 184
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A LF M V V++ A++S + G V+ LF E++P+
Sbjct: 185 CQVGRVDEARTLFDEMPKRNV----VSWTAMVSGYAQNGQVNLARKLF-------EVMPE 233
Query: 180 TQHYACVVDMYG--RAGLLEEAEAFIREMP 207
+ ++G +AG +E+AE MP
Sbjct: 234 RNEVSWTAMLFGYIQAGRIEDAEELFNAMP 263
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y + A++VF+ + +D+ S++ +ISGL++ R L + + +
Sbjct: 52 NALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISGLSLR---RHTLPDAAAALATIPY 108
Query: 142 PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH--YACVVDMYGRAGLLEE 198
P V+F +L+ GL+ + LF+ M P+ H Y ++ + AG ++E
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIQLFRQM-------PERNHISYTVLLGGFLDAGRVDE 161
Query: 199 AEAFIREMPIEAEWSVWGALLNA-CRIHRNDE---MFD 232
A EMP + + W A+L+ C++ R DE +FD
Sbjct: 162 ARKLFDEMPAK-DVVAWTAMLSGYCQVGRVDEARTLFD 198
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 182/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W MI GYA+ G EA+S+F M+K P++ TL VLSACS++ AL G
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVC-PDKITLAGVLSACSAVGALELGSE 352
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y S R L + VG A+++MY KCGD+ AI+VF + K++ SW+ +I GLA NG
Sbjct: 353 LDGYASCR-GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNG 411
Query: 124 CGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+Q F LM +G+ PDD+TFI ++SAC H GLV G F ++++ ++I+P+ +H
Sbjct: 412 QGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEH 471
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ R+G LEE FI ++P + + + GALL ACR +N E+ + + ++ +
Sbjct: 472 YSCMVDLLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 531
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A + R +D+ K+R +R G+ K GCSW+E++ +
Sbjct: 532 PTNSWNYVVSSKIYASSGRLDDSAKMRGPMRERGVNKTPGCSWVEISGKVL 582
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW M+ Y G E + ++M K PN TL VL+AC L
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + S + +LVG+A++ MY KCG++ A +VF+ + KD+++W+ +I+G A
Sbjct: 249 GRWVEEW-SKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+ LF M GV PD +T ++SACS G ++ G L ++ +
Sbjct: 308 QNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL-DGYASCRGLYNNV 366
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G L++A R+M + S W AL+
Sbjct: 367 YVGTALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNALI 404
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
+ DL+ + +++I +Y D G A +VFN + +D++SW+ ++ G + +
Sbjct: 156 KIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGR 215
Query: 131 LFSLMIING-VFPDDVTFIALISACSHGG 158
+ M+ +G V P+ VT +++AC G
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACRDEG 244
>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Cucumis sativus]
Length = 678
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K++++SW MI Y EAVS+F +ME+ +P+ T+ ++L AC +SAL
Sbjct: 266 MTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG-MKPDAVTIASLLPACGDLSALFL 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI + +L + L+ NA+++MY KCG + A VF+ + +D++SW++++S
Sbjct: 325 GRRLHKYIE-KGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYG 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LF+ M+ +G PD + F++++SACSH GL+DQG F+ M+ Y IVP+
Sbjct: 384 RSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRI 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+VD++GRAG +EEA +FI++MP+E VWGALL+ACR+H ++ L
Sbjct: 444 EHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQ 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A W+D +R ++++G+KK G S +E+N +
Sbjct: 504 LAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQV 555
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++VV + MI Y EA+S+FQ M P+ T VL ACS + L G
Sbjct: 99 EKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCA-FNPDHYTFPCVLKACSGLDNLRVGL 157
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH I + L + +GNA++ MY KCG + A +V + + Y+D++SW+++++G A +
Sbjct: 158 QVHDAI-VKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQS 216
Query: 123 GCGRQALQL 131
G AL++
Sbjct: 217 GQFDDALEI 225
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 5/146 (3%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HS I L + + ++ Y G+ +A +F+ K+++ ++ +I N
Sbjct: 57 LHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNN 116
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL +F +M+ PD TF ++ ACS GL D + + + ++ T +
Sbjct: 117 LYVEALSIFQVMLSCAFNPDHYTFPCVLKACS--GL-DNLRVGLQVHDAIVKVGLDTNLF 173
Query: 184 A--CVVDMYGRAGLLEEAEAFIREMP 207
+V MYG+ G L EA + +MP
Sbjct: 174 IGNALVAMYGKCGCLREARKVLDQMP 199
>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 972
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV W ++I A+ G A+ + +EM + E N T+V+ L ACS ++AL
Sbjct: 560 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLAALRQ 618
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R L N + N++I+MY +CG + + ++F+++ +D++SW+ +IS
Sbjct: 619 GKEIHQFI-IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 677
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ LF G+ P+ +TF L+SACSH GL+++G FK M T Y + P
Sbjct: 678 MHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV 737
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ YAC+VD+ RAG E FI +MP E +VWG+LL ACRIH N ++ + + L
Sbjct: 738 EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFE 797
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + LM+N ++ A RWEDA KIR ++ G+ K GCSWIEV +
Sbjct: 798 LEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 849
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 101/171 (59%), Gaps = 1/171 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +VVSWT +I G + G+ EA+SVF++M + +PN T+ + +SAC+++S L G+
Sbjct: 324 KPNVVSWTALIAGSEQNGYDFEALSVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGR 382
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y +L LVGN++++ Y KC V +A + F M+ D++SW+ +++G A+
Sbjct: 383 EIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALR 442
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
G +A++L S M G+ PD +T+ L++ + G L F+ M ++
Sbjct: 443 GSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSM 493
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 117/227 (51%), Gaps = 16/227 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+++W ++ G+ + G + A+ FQ M + +PN T+ L+AC + L G+ +
Sbjct: 463 DIITWNGLVTGFTQYGDGKAALEFFQRMH-SMGMDPNTTTISGALAACGQVRNLKLGKEI 521
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ R + +S VG+A+I+MY C + +A VF+ L+ +D++ W+++IS A +G
Sbjct: 522 HGYV-LRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGR 580
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
AL L M ++ V + VT ++ + ACS + QG +++ + +
Sbjct: 581 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG-------KEIHQFIIRCGLDT 633
Query: 185 C------VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
C ++DMYGR G ++++ MP + + W +++ +H
Sbjct: 634 CNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMH 679
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 105/210 (50%), Gaps = 2/210 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V SWT ++ Y G EE + +F M + P+ V ACS +
Sbjct: 150 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRV 208
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V+ Y+ + ++ V ++++M++KCG + IA + F + +KD+ W+ ++SG
Sbjct: 209 GKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++AL+ S M ++GV PD VT+ A+IS + G ++ F M + + P
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNV 327
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+ ++ + G EA + R+M +E
Sbjct: 328 VSWTALIAGSEQNGYDFEALSVFRKMVLEG 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 91/203 (44%), Gaps = 16/203 (7%)
Query: 14 GGYAER-GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY 72
GG R G A + M+ T E E ++L C + L G VH+ +
Sbjct: 61 GGSVHRNGVLNNAAMLLSSMDLTNPDECIE-IYASILQKCRKLYNLRLGFQVHAQLVVN- 118
Query: 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF 132
+ V +G+ ++ +Y + G V A ++F+ ++ +++ SW+ ++ G + ++LF
Sbjct: 119 GVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLF 178
Query: 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYACV---- 186
LM+ GV PD F + ACS L ++ VY+ + + +CV
Sbjct: 179 YLMVNEGVRPDHFVFPKVFKACSE-------LKNYRVGKDVYDYMLSIGFEGNSCVKGSI 231
Query: 187 VDMYGRAGLLEEAEAFIREMPIE 209
+DM+ + G ++ A F E+ +
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFK 254
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 184/294 (62%), Gaps = 7/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE----PNEATLVNVLSACSSIS 56
MP+R+V+SW+ +I GY G +EA+ +F+EM+ K E PNE T+ VLSAC +
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTV 115
AL G++VH+YI +Y + + ++G A+I+MY KCG + A +VFN L + KD+ ++S +
Sbjct: 214 ALEQGKWVHAYID-KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAM 272
Query: 116 ISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
I LAM G + QLFS M + + P+ VTF+ ++ AC H GL+++G FK M +
Sbjct: 273 ICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEF 332
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
I P QHY C+VD+YGR+GL++EAE+FI MP+E + +WG+LL+ R+ + + +
Sbjct: 333 GITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGA 392
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+ ++ G + L+SN +A RW + IR E+ G+ K GCS++EV
Sbjct: 393 LKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEV 446
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII---N 138
N+V+N Y K G + A ++F+ + +++ISWS +I+G M G ++AL LF M + N
Sbjct: 132 NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 191
Query: 139 GVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
F P++ T ++SAC G ++QG + A Y + ++DMY + G L
Sbjct: 192 EAFVRPNEFTMSTVLSACGRLGALEQGKWV-HAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 197 EEAEAFIREMPIEAEWSVWGALL 219
E A+ + + + + A++
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMI 273
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 176/287 (61%), Gaps = 2/287 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD +SW +++ GY + G EA+ +F++M K P +V+ AC+ ++ L G+
Sbjct: 269 RRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAK-VRPGAVAFSSVIPACAHLATLHLGK 327
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y+ R + + +A+++MY KCG++ A ++F+ + D +SW+ +I G A++
Sbjct: 328 QLHGYV-LRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALH 386
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +A+ LF M GV P+ V F+A+++ACSH GLVD+ F +M+ VY + + +H
Sbjct: 387 GHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEH 446
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YA V D+ GRAG LEEA FI +M +E SVW LL++C +H+N E+ + + +++
Sbjct: 447 YAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTID 506
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++G + LM N +A RW++ K+R +R+ GL+KK CSWIE+
Sbjct: 507 SENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMK 553
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 131/254 (51%), Gaps = 18/254 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVS+ T+I GYA+ G E+A+ + +EM T + +P+ TL +VL S +
Sbjct: 166 MPRKDVVSYNTVIAGYAQSGMYEDALRMVREM-GTSDLKPDAFTLSSVLPIFSEYVDVLK 224
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R + +G+++++MY K + + +VF+ L +D ISW+++++G
Sbjct: 225 GKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYV 283
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
NG +AL+LF M+ V P V F ++I AC+H + G +L
Sbjct: 284 QNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIF 343
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MF 231
I + +VDMY + G ++ A M + E S W A++ +H + +F
Sbjct: 344 IA------SALVDMYSKCGNIQAARKIFDRMNLHDEVS-WTAIIMGHALHGHGHEAVSLF 396
Query: 232 DPIRQELVNKKGVS 245
+ ++++ V V+
Sbjct: 397 EEMKRQGVKPNQVA 410
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 13/200 (6%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V++W ++I + ++ A++ F EM + P+ +VL +C+ + L FG+ VH
Sbjct: 70 VLAWKSVIRCFTDQSLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+I R + GNA++NMY K + +VF ++ KD++S++TVI+G A +G
Sbjct: 129 GFI-VRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMY 187
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEIVPQT 180
AL++ M + + PD T +++ S G G ++ K + + I
Sbjct: 188 EDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIG--- 244
Query: 181 QHYACVVDMYGRAGLLEEAE 200
+ +VDMY ++ +E++E
Sbjct: 245 ---SSLVDMYAKSARIEDSE 261
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 34/197 (17%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
++A + ++ + I + S + +H+ +I T+ S+S+ + VI++Y + A+
Sbjct: 4 SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ---SLSHTSASIVISIYTNLKLLHEALL 60
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS---- 155
VF L +++W +VI +AL F M +G PD F +++ +C+
Sbjct: 61 VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120
Query: 156 -------HGGLVDQG-----------------LILFKAMSTVYEIVPQTQ--HYACVVDM 189
HG +V G L+ ++ V+E++P+ Y V+
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180
Query: 190 YGRAGLLEEAEAFIREM 206
Y ++G+ E+A +REM
Sbjct: 181 YAQSGMYEDALRMVREM 197
>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Vitis vinifera]
Length = 590
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/294 (37%), Positives = 184/294 (62%), Gaps = 10/294 (3%)
Query: 3 KRDVVSWTTMIGGYAER--GFCE------EAVSVFQEMEKTKEAEPNEATLVNVLSACSS 54
K D+ SW +++ Y CE E +++F EM+K+ + NE TLV ++SAC+
Sbjct: 172 KPDLASWNSILSAYVHNSGAICEDVSLSLEVLTLFIEMQKSL-IKANEVTLVALISACAE 230
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
+ ALS G + H Y+ +++L +++ VG A+I+MY KCG + +A Q+F+ L ++D + ++
Sbjct: 231 LGALSQGAWAHVYV-LKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNA 289
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G A++G G QAL LF M + G+ PDDVT + + +CSH GLV++G +F++M VY
Sbjct: 290 MIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVY 349
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P+ +HY C+VD+ GRAG L EAE + MP++ +W +LL A R+H N E+ + +
Sbjct: 350 GVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVV 409
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+ + + G + L+SN +A +RW+D ++R ++ G+ K G S +EV
Sbjct: 410 LKHLIQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEV 463
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 19/238 (7%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+P + + T+I A + A S++ + +PN T ++ AC S L
Sbjct: 66 IPNPTIFLYNTLISSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLR 125
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+++ + + V A++N Y KCG VG +FN ++ D+ SW++++S
Sbjct: 126 HGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAY 185
Query: 120 AMN--------GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
N + L LF M + + ++VT +ALISAC+ G + QG A +
Sbjct: 186 VHNSGAICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQG-----AWA 240
Query: 172 TVYEIVP--QTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
VY + + H+ ++DMY + G L+ A ++P + + A++ IH
Sbjct: 241 HVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLP-HRDTLCYNAMIGGFAIH 297
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD + + MIGG+A G+ +A+ +F++M A P++ TLV + +CS + +
Sbjct: 279 LPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLA-PDDVTLVVTMCSCSHVGLVEE 337
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G V + Y + ++++ + G + A + V NM + + W +++
Sbjct: 338 GCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAA 397
Query: 120 AMNG 123
++G
Sbjct: 398 RVHG 401
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++VSW MI Y + AV +F+ M+ K + + T+V+V+SAC+S+ AL+
Sbjct: 290 MVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK-VDFDYITMVSVISACASLGALNT 348
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H + R L ++ + NA+I+MY KCG++ +A +VF L + ++SW+++I A
Sbjct: 349 GRWMHELVK-RKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACA 407
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL+LFS M GV P+ TF A+ +AC H GLV++G F++M Y I+P
Sbjct: 408 SHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGV 467
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ GRAG L EA FI +MP+E + SVWGALL +CRIH N E+ + + ++L
Sbjct: 468 EHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFL 527
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+V + LMSN +A A RWEDA ++R + LKK G S +EVN
Sbjct: 528 LDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVN 576
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 131/247 (53%), Gaps = 20/247 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R++VSWT +I GY + + +E + VF+EM + +PN TLV+VL AC+ + L+
Sbjct: 189 MVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG-TQPNAVTLVSVLPACAGLEFLNL 247
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H Y I D VS + NA+I +Y KCG+V A +F+ + ++++SW+ +I+
Sbjct: 248 GKLIHGYGIKLGVDPDVS--LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAY 305
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVY 174
N G A++LF M V D +T +++ISAC+ G ++ G L+ K +
Sbjct: 306 EQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINV 365
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----M 230
I ++DMY + G ++ A +P + S W +++ AC H + E +
Sbjct: 366 SIT------NALIDMYAKCGNIDLAREVFERLPCRSVVS-WTSMIGACASHGHGEDALKL 418
Query: 231 FDPIRQE 237
F ++ E
Sbjct: 419 FSRMKDE 425
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDV W T+I GYA+ G CEEA++++ M P+ T V+ +C+ +SAL
Sbjct: 88 MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAG-LFPDNYTFPFVVRSCAVLSALRE 146
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I ++ V ++++ MY + G+ VF + ++++SW+ VI+G
Sbjct: 147 GKEVHCNI-VKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYV 205
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++ L +F M+ +G P+ VT ++++ AC+ ++ G L + P
Sbjct: 206 QNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-KLIHGYGIKLGVDPDV 264
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +YG+ G +E A + M ++ S W A++ A
Sbjct: 265 SLTNALIALYGKCGNVETARSLFDGMVVQNLVS-WNAMIAA 304
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L+ CSS+ LS +H+ + T L +I + A ++F+ + +
Sbjct: 35 LLNCCSSLPDLS---RIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKR 91
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
D+ W+T+I G A G +AL L+S M G+FPD+ TF ++ +C+
Sbjct: 92 DVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCA 139
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 180/289 (62%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++ GY + ++A+ +F+ M + +PN +TL +VL CS++SAL F
Sbjct: 200 MPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGF 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + LS + VG ++++MY KCGD+ A +F + +D+++W+ +ISG A
Sbjct: 260 GKQIHQWC-MKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++A+ LF M GV P+ +TF+ +++AC H GL D G+ F+ M +Y I P+
Sbjct: 319 QHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRV 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ RAG LE A FIR MP E S +G LL ACR+++N E + +L+
Sbjct: 379 DHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIE 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K S G + ++N +A A++W+D +++R ++ + K G SWIE+
Sbjct: 439 KDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIK 487
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 10/157 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV SW TM+ G ++ G EEA VF M N + ++S + +S
Sbjct: 106 MPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR-----NSVSWNAMVSGFACSGDMST 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + D ++ A+++ Y+ G+V AI+ F + ++++SW+ V++G
Sbjct: 161 AEEWFRNAPEKEDA----VLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYV 216
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSH 156
N AL+LF M+ V P+ T +++ CS+
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 180/288 (62%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT+MI ++ G EA+ +F+EM+ +PN T+ +L AC +I+AL G+
Sbjct: 350 NVVSWTSMIACCSQNGRDMEALELFREMQ-IAGVKPNSVTIPCLLPACGNIAALMHGKAA 408
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + S R +S VG+A+I+MY KCG + + F+ + K+++ W+ VI+G AM+G
Sbjct: 409 HCF-SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGK 467
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A+++F LM +G PD ++F ++SACS GL ++G F +MS+ Y I + +HYA
Sbjct: 468 AKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYA 527
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V + RAG LE+A A IR MP+ + VWGALL++CR+H N + + ++L +
Sbjct: 528 CMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPS 587
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A W + N++RD ++ GL+K GCSWIEV +
Sbjct: 588 NPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ +V S++T+I +++ A+S F +M T+ P+ L + + AC+ +SAL
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM-LTRGLMPDNRVLPSAVKACAGLSALKP 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH I++ + V +++++MY+KC + A +VF+ + D++SWS +++ A
Sbjct: 133 ARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
GC +A +LFS M +GV P+ +++ +I+ +H GL + +++F M
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 19/284 (6%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ +++SW MI G+ G EAV +F +M + EP+ T+ +VL A + L G
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMH-LRGFEPDGTTISSVLPAVGDLEDLVMGI 270
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y+ + L V +A+I+MY KC QVF+ + + D+ S + I GL+ N
Sbjct: 271 LIHGYV-IKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +L+LF + G+ + V++ ++I+ CS G + L LF+ M + + P +
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQ-IAGVKPNSVT 388
Query: 183 YACVVDMYGRAGLL---EEAEAFIREMPIEAEWSVWGALLN---AC-RIHRNDEMFDPI- 234
C++ G L + A F I + V AL++ C RI + FD I
Sbjct: 389 IPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ LV V G +A + ++A +I D ++R G K
Sbjct: 449 TKNLVCWNAVIAG--------YAMHGKAKEAMEIFDLMQRSGQK 484
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +++V W +I GYA G +EA+ +F M+++ + +P+ + VLSACS
Sbjct: 447 IPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGLTEE 505
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G Y + +S++Y GI +V + ++ +++ L+
Sbjct: 506 GSYYFNSMSSKY----------------------GIEARVEH---------YACMVTLLS 534
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G QA + M +N PD + AL+S+C V G + A ++E+ P
Sbjct: 535 RAGKLEQAYAMIRRMPVN---PDACVWGALLSSCRVHNNVSLGEV---AAEKLFELEPSN 588
Query: 181 Q-HYACVVDMYGRAGLLEEAEAFIREM 206
+Y + ++Y G+ E +R+M
Sbjct: 589 PGNYILLSNIYASKGMWNEVNR-VRDM 614
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 184/294 (62%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV++WT MI GY + G +EA+ +F+ M EPN TL VLSAC+S++ L +
Sbjct: 574 MNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIG-PEPNSHTLAAVLSACASLAYLDY 632
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISG 118
G+ +H I + + SVS V NA+I +Y + G V +A +VF+ + + K+ I+W+++I
Sbjct: 633 GKQIHCKAIRSLQEQSVS--VSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVA 690
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+A +G G QA+ LF M+ GV PD +T++ ++SAC+H G VD+G ++ M + IVP
Sbjct: 691 MAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVP 750
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q HYAC+VD++ RAGLL EA FI+ MP+ + VWG+LL ACR+ +N ++ + +L
Sbjct: 751 QMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKL 810
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ + G ++ ++N ++ RW DA +I + G+KK+TG SW V +
Sbjct: 811 LSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKV 864
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 129/273 (47%), Gaps = 37/273 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R +VSW T+I GY + G A+ F M EP+ T+ +VLSAC+++ L
Sbjct: 439 MVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKM 498
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ +HSYI R + S+ + NA+I+
Sbjct: 499 GKQMHSYI-LRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEG 557
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD A ++F+++ +D+I+W+ +I G NG +A++LF MI+ G P+ T
Sbjct: 558 YVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTL 617
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++SAC+ +D G I KA+ ++ E + ++ +Y R+G + A ++
Sbjct: 618 AAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSN--AIITVYARSGSVPLARRVFDQI 675
Query: 207 PIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
E W +++ A H E + +E+V
Sbjct: 676 CWRKETITWTSMIVAMAQHGLGEQAVVLFEEMV 708
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 45/237 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSWT MI G G +AV F +M A P++ TL NVLS+C+++ A
Sbjct: 307 MPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFA-PSQFTLTNVLSSCAAMEACGV 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD--------------------------- 93
G+ VH ++ + LS V N+V+ MY KCGD
Sbjct: 366 GRKVHPFV-VKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYT 424
Query: 94 ----VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTFI 148
+ +A+ +F + + ++SW+T+I+G NG AL+ FS M+ + + PD T
Sbjct: 425 HQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVT 484
Query: 149 ALISACSHGGLVDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++SAC++ ++ G IL M +I+ ++ Y ++G +E A
Sbjct: 485 SVLSACANLRMLKMGKQMHSYILRTGMPCSSQIM------NALISTYAKSGSVETAR 535
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 7/137 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+++++Y K G + A VF + +D +SW+ +I GL +G A++ F M+ G
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFA 344
Query: 142 PDDVTFIALISACS--HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
P T ++S+C+ V + + F + VP V+ MYG+ G E A
Sbjct: 345 PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVAN---SVLYMYGKCGDAETA 401
Query: 200 EAFIREMPIE--AEWSV 214
A M + + W+V
Sbjct: 402 RAVFERMQVRSVSSWNV 418
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 185/287 (64%), Gaps = 4/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VS+ ++I G E EE+ +F +M K+ P+ TL+ +L+ACS+++AL G
Sbjct: 372 KDIVSYNSLISGCVENCRAEESFRLFHQM-KSSGIRPDITTLLGILTACSNLAALGHGSS 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H Y +V+ + NA+++MY KCG + +A +VF+ + +D++SW+T++ G ++G
Sbjct: 431 CHGYCVVN-GYAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQTQH 182
G++AL LF+ M GV PD+VT +A++SACSH GLVD+G LF +MS + ++P+ H
Sbjct: 490 LGKEALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDH 549
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+ D+ RAG L+EA F+ +MP E + V G LL+AC ++N E+ + + +++
Sbjct: 550 YNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNVELGNEVSKKM-QSL 608
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + + L+SNT++ A+RWEDA KIR ++ GL K G SW++V+
Sbjct: 609 GETTESLVLLSNTYSAAERWEDAAKIRMTQKKSGLLKTPGYSWVDVD 655
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 108/225 (48%), Gaps = 6/225 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFG 61
K++ V+W+ MIGGY E +EA VF +M + A + +L C+ LS G
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGG 327
Query: 62 QYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH Y I + L ++ VGN VI+ Y K G + A + F + KD++S++++ISG
Sbjct: 328 RCVHCYAIKAGFILDLT--VGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCV 385
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++ +LF M +G+ PD T + +++ACS+ + G V T
Sbjct: 386 ENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSC-HGYCVVNGYAVNT 444
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G L A+ M + + W +L IH
Sbjct: 445 SICNALMDMYTKCGKLYVAKRVFDTMH-KRDIVSWNTMLFGFGIH 488
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ + ++W MI Y GF E+A+ ++ +M + P + T VL AC+ + A+ G
Sbjct: 64 PRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSG-VRPTKFTYPFVLKACAGLRAIEDG 122
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +HS++ + + V A+++ Y KCG++ +AI+VF+ + +D+++W+ +ISG ++
Sbjct: 123 KLIHSHVKCS-NFAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSL 181
Query: 122 NGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQG 163
+ C + LF M + P+ T + + A G + +G
Sbjct: 182 HCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALREG 224
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+V+W MI G++ + + +F +M ++ PN +T+V + A AL
Sbjct: 164 MPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRAGALRE 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y TR S +V ++++Y K + A +VF+ K+ ++WS +I G
Sbjct: 224 GKAVHGY-CTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMIGGYV 282
Query: 121 MNGCGRQALQLFSLMIING 139
N ++A ++F M++N
Sbjct: 283 ENEMIKEAGEVFLQMLVNA 301
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 10/186 (5%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+ +L +C L GQ +H ++ R LS S ++ N + +Y C +V +A VF+
Sbjct: 2 FLRLLESCIRSRNLILGQIIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 104 LAYKDM--ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + + I+W +I NG +AL L+ M+ +GV P T+ ++ AC+ ++
Sbjct: 61 IPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIE 120
Query: 162 QGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G ++ S V Y C +VD Y + G L+ A EMP + + W A++
Sbjct: 121 DGKLIH---SHVKCSNFAADMYVCTALVDFYAKCGELDMAIKVFDEMP-KRDIVAWNAMI 176
Query: 220 NACRIH 225
+ +H
Sbjct: 177 SGFSLH 182
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRD+VSW TM+ G+ G +EA+S+F M+ T P+E TL+ +LSACS +
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTG-VHPDEVTLLAILSACSHSGLVDE 528
Query: 61 GQYVHSYISTRYDLSV 76
G+ + + +S R D +V
Sbjct: 529 GKQLFNSMS-RGDFNV 543
>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV W ++I A+ G A+ + +EM + E N T+V+ L ACS ++AL
Sbjct: 317 LSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSN-VEVNTVTMVSALPACSKLAALRQ 375
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R L N + N++I+MY +CG + + ++F+++ +D++SW+ +IS
Sbjct: 376 GKEIHQFI-IRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYG 434
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ LF G+ P+ +TF L+SACSH GL+++G FK M T Y + P
Sbjct: 435 MHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAV 494
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ YAC+VD+ RAG E FI +MP E +VWG+LL ACRIH N ++ + + L
Sbjct: 495 EQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFE 554
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + LM+N ++ A RWEDA KIR ++ G+ K GCSWIEV +
Sbjct: 555 LEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKL 606
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 125/264 (47%), Gaps = 44/264 (16%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV W M+ GY +G ++A++VF++M + +PN T+ + +SAC+++S L G+
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKM-VLEGVKPNSITIASAVSACTNLSLLRHGRE 233
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV--ISGLAM 121
+H Y +L LVGN++++ Y KC V +A + F M+ D++SW+ + ++G
Sbjct: 234 IHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293
Query: 122 NGCGRQALQLFSLM-IINGVFP-----DDVTFIALISACSHGGLVDQGLILFKAMS---- 171
G G+ AL+ F M I VF D V + ++ISAC+ G L L + M+
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353
Query: 172 -----TVYEIVPQTQHYAC-------------------------VVDMYGRAGLLEEAEA 201
T+ +P A ++DMYGR G ++++
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413
Query: 202 FIREMPIEAEWSVWGALLNACRIH 225
MP + + W +++ +H
Sbjct: 414 IFDLMP-QRDLVSWNVMISVYGMH 436
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V SWT ++ Y G EE + +F M + P+ V ACS +
Sbjct: 71 MSERNVFSWTAIMEMYCGLGDYEETIKLFYLM-VNEGVRPDHFVFPKVFKACSELKNYRV 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V+ Y+ + ++ V ++++M++KCG + IA + F + +KD+ W+ ++SG
Sbjct: 130 GKDVYDYMLS-IGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++AL +F M++ GV P+ +T + +SAC++ L+ G + V E+
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VD Y + +E A M + + W A+L
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKF-GMIKQTDLVSWNAML 286
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 40 PNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97
P+E + ++L C + L G VH+ + + V +G+ ++ +Y + G V A
Sbjct: 6 PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVN-GVDVCEFLGSRLLEVYCQTGCVEDA 64
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++F+ ++ +++ SW+ ++ G + ++LF LM+ GV PD F + ACS
Sbjct: 65 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSE- 123
Query: 158 GLVDQGLILFKAMSTVYEIVPQT--QHYACV----VDMYGRAGLLEEAEAFIREMPIE 209
L ++ VY+ + + +CV +DM+ + G ++ A F E+ +
Sbjct: 124 ------LKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 178/290 (61%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V+SWT M+ GYA+ G EEAV F EM + PNE T+ +VL AC+++ AL+
Sbjct: 177 MPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALAL 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDMISWSTVISGL 119
G+ V Y R L+ + V NA++ MY KCG + A VF + +D+ SW+++I
Sbjct: 237 GRKVERYARGRGMLT-NVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAF 295
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R+ L LF + + G PD +TF+ +I AC+HGGLVD+G +LF +M + + P+
Sbjct: 296 AVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHGGLVDEGKLLFNSMREEFGLKPR 355
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL+EA++ I MP+E + +WGALL AC H N E+ + ++L+
Sbjct: 356 IEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGALLGACSFHGNLELAEVAVEKLM 415
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN +A +W+ ++ ++ KK G S+IE++
Sbjct: 416 RLEPQNTANLVILSNIYASHGKWDGVAQVWKLLKEKDHKKSAGYSFIELD 465
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 2/145 (1%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN-GV 140
NA+++ Y +CG V A +F + +++ISW+ ++SG A NG +A++ F M GV
Sbjct: 155 NALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGV 214
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
P++VT +++ AC+ G + G + + + ++ +V+MY + G + A
Sbjct: 215 RPNEVTVSSVLPACAAVGALALGRKVER-YARGRGMLTNVYVANALVEMYAKCGSIRRAW 273
Query: 201 AFIREMPIEAEWSVWGALLNACRIH 225
R + + + W +++ A +H
Sbjct: 274 MVFRGIGKQRDLCSWNSMIMAFAVH 298
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 183/296 (61%), Gaps = 9/296 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSW +MI Y + G EA+ +F+EM + + ++LSAC+ I AL
Sbjct: 249 MPERDVVSWGSMISAYVQNGRAAEALELFKEM-MLAGVSADSIIITSILSACAQIGALDM 307
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+Y+ R L + A+++MY KCG + A VFN + K++ SW+ ++SGLA
Sbjct: 308 GRWIHAYMK-RSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLA 366
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G AL+LF M GV P+D+TF+A++SACSH G V++G F M + I P+
Sbjct: 367 IHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKV 426
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR---QE 237
+HY C+VD+ R GL+ EA+ IR MP+E +WGALLNAC++H + + + Q+
Sbjct: 427 EHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQK 486
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVNPSI 292
LV++ G G + L+SN FA +W + K R +++MG++KK G S IE++ +
Sbjct: 487 LVSEDG---GCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVV 539
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 122/288 (42%), Gaps = 48/288 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +VV+W TMI G G E A +F EM +
Sbjct: 187 MPNHNVVTWNTMITGCFGCGDTERARRLFGEMPE-------------------------- 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V S+ NAV+ Y K G V IA +F+++ +D++SW ++IS
Sbjct: 221 -RNVGSW--------------NAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYV 265
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL+LF M++ GV D + +++SAC+ G +D G + M ++
Sbjct: 266 QNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRS-KLRNDV 324
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+VDMY + G ++ A MP + S W A+L+ IH + E+F +
Sbjct: 325 FLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCS-WNAMLSGLAIHGHGFAALELFKQMES 383
Query: 237 ELVNKKGVS-VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283
V ++ V + S+ + + W+ N++ E + GC
Sbjct: 384 TGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGC 431
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 12/192 (6%)
Query: 34 KTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 93
K K N TL + L +C S L + +H+ + + + + V + V +
Sbjct: 20 KFKSKNSNYKTL-SALQSCKSTEDL---KKIHAQLIITGQIKDTFIATKTVESYAVSARN 75
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ A VF + Y D SW+T+I G +AL+ + LM GV + TF+ ++ A
Sbjct: 76 IDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKA 135
Query: 154 CSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+G I+ + V Y++ + ++ MY + G + +A EMP
Sbjct: 136 YGLRPSYQEGRIVHGKLVKVGFCYDVFTRN----ALIHMYLKCGSITDAHLLFDEMP-NH 190
Query: 211 EWSVWGALLNAC 222
W ++ C
Sbjct: 191 NVVTWNTMITGC 202
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 179/286 (62%), Gaps = 3/286 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RD+++W+ +I GY + G EAV F EM ++ +P++ L +++ ACS + L
Sbjct: 282 PERDIIAWSALISGYTQNGQPNEAVKTFLEMS-SRNVKPDKFVLTSLMLACSQLGNLDLA 340
Query: 62 QYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V SY +TR + + V A+I+M KCG++ A+ +F + +D+IS+ +V+ GL+
Sbjct: 341 KWVDSY-ATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLS 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G QA+ LF M+ + PDDV F +++ACS GLVD+G F+ M Y +VP
Sbjct: 400 IHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSV 459
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+ R+G L+EA I+ +P+++ WGALL AC+++ + E+ + + L+
Sbjct: 460 DHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIE 519
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
+ + G + L+SN +A ADRW D + +R+++ GL+K GCSWI
Sbjct: 520 IEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCSWI 565
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT MI GY+ G EA +F M E N A+ ++ + +
Sbjct: 188 MSERNVVSWTAMIVGYSSIGNLVEAKRLFDLM-----PERNVASWNAIIGGYMKMGDVKS 242
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + +S + + I+ Y K GD+ A +F +D+I+WS +ISG
Sbjct: 243 AEKAFDEMPEKNVVSFTTM-----IDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYT 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A++ F M V PD +L+ ACS G +D + + +T + +
Sbjct: 298 QNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWV-DSYATRCSVDLRG 356
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMP 207
H A ++DM + G +E A +MP
Sbjct: 357 AHVTAALIDMNAKCGNMERAMYLFEKMP 384
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 106/214 (49%), Gaps = 16/214 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +++ GY + + +S++ M K ++ P+ T ++L C+S + G +H I
Sbjct: 95 WNSLVSGYCAKLQFVDIISLYVRM-KREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSI 153
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R + V +++N+Y K G + A +VF+ ++ ++++SW+ +I G + G +A
Sbjct: 154 -LRCGVDEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEA 212
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACV 186
+LF LM V ++ A+I GG + G + K+ ++ +P+ + +
Sbjct: 213 KRLFDLMPERNV----ASWNAII-----GGYMKMGDV--KSAEKAFDEMPEKNVVSFTTM 261
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+D Y +AG + A ++ P E + W AL++
Sbjct: 262 IDGYAKAGDMLSARNLFQKAP-ERDIIAWSALIS 294
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD++S+ +++ G + G ++AVS+F+ M ++ P++ +L+ACS +
Sbjct: 383 MPKRDLISYCSVMQGLSIHGHGDQAVSLFERM-LGEDLTPDDVAFTVILTACSRAGLVDE 441
Query: 61 GQYVHSYISTRYDL 74
G + + +Y +
Sbjct: 442 GWHYFEMMRCKYSM 455
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 177/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW T+I G+ G+ +EAV +F EM P+EAT+V +SA + L
Sbjct: 157 MPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGI 216
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ R + S+ +G A+INMY +CG +G A + F+ +A K++ W++VI G A
Sbjct: 217 GRCAHGYV-IRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFA 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G AL+LF+ M G+ P+ VTF+A+++ACSHGGLV++G F M ++ I
Sbjct: 276 AHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSM-GIKSTM 334
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C++D+ GRAG LEEA +P + +W +LL AC+ H N EM + ++L +
Sbjct: 335 QHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAH 394
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ ++ L+SNT+A A +WED + R ++ G+ K+ G SWIE++
Sbjct: 395 AEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELD 443
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IINGV 140
N +++ V+ D+ A +VF + ++++SW+TVI+G +G ++A+ LF+ M ++ G+
Sbjct: 135 NVLLDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGL 194
Query: 141 FPDDVTFIALISA-----------CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189
PD+ T + +SA C+HG ++ + L A+ +++M
Sbjct: 195 APDEATMVGFVSAVRDMGVLGIGRCAHGYVIRREFSLDGALGV------------ALINM 242
Query: 190 YGRAGLLEEAEAFIREMPIEAEWSV--WGALLNACRIHRNDEM----FDPIRQELVNKKG 243
Y R G + +A R A +V W +++ H + EM F +RQ + G
Sbjct: 243 YTRCGSMGDA---FRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNG 299
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK---KKTGC 283
V TF + N + + K + +R MG+K + GC
Sbjct: 300 V---TFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGC 339
>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 583
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 190/297 (63%), Gaps = 6/297 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ VV+W +++ G+ + G E+A+ VF +M ++ EP+ AT V++LSAC+ A+S
Sbjct: 168 MPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESG-FEPDSATFVSLLSACAQTGAISL 226
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH YI + L V+ +G A+IN+Y +CGDVG A +VF+ + ++ +W+ +IS
Sbjct: 227 GSWVHQYIVSE-GLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285
Query: 121 MNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G G+QA+ LF+ M + G P++VTF+A++SAC+H GLV+ G ++K M+ Y ++P
Sbjct: 286 THGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPG 345
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDPIRQ 236
+H+ C+VDM GRAG L+EA FI+++ + +W A+L AC++HRN ++ I +
Sbjct: 346 VEHHVCIVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAK 405
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
L+ + + G ++SN +A + + ++ + IRD + R L+K+ G S IEV +
Sbjct: 406 RLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTY 462
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 3/186 (1%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +V+ +C+ +SAL G+ VH + + + V A++ Y KCGD+ A Q
Sbjct: 105 PSNYTFTSVIKSCADLSALKIGKGVHCH-AVVSGFGLDTYVQAALVTFYSKCGDMEAARQ 163
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF+ + K +++W++++SG NG A+++F M +G PD TF++L+SAC+ G
Sbjct: 164 VFDRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGA 223
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ G + + + + + + ++++Y R G + +A +M E + W A++
Sbjct: 224 ISLGSWVHQYIVS-EGLDVNVKLGTALINLYSRCGDVGKAREVFDKMK-ETNVAAWTAMI 281
Query: 220 NACRIH 225
+A H
Sbjct: 282 SAYGTH 287
>gi|357155797|ref|XP_003577241.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Brachypodium distachyon]
Length = 519
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 172/290 (59%), Gaps = 1/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R VVSW MI G A G + AV F++M + E P++ TL L AC G+
Sbjct: 230 RRSVVSWNAMIAGCARCGRDDMAVRYFEDMVREGEVAPDDGTLAAALPACGRTGNAGAGR 289
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ H Y L S V NAVI+MY KCGDVG A +VF + + ++SW+T+ISG ++N
Sbjct: 290 WAHEYAREAGLLDGSVHVVNAVIDMYCKCGDVGSAREVFERMRQRTVVSWNTMISGFSLN 349
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G + + LF M+ +G PD VTF+ ++ C+H G + G +F++M + Y I +H
Sbjct: 350 GQGVEGIDLFREMMRSGENPDAVTFLGVLGCCAHAGAANVGQEIFQSMQSEYGIEAGVEH 409
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+VD+ GR+GLLEEA A I+ MP+ ++WGALL+ACR H + + +EL++ +
Sbjct: 410 YGCMVDVLGRSGLLEEAHALIQGMPMRPNAAIWGALLSACRAHAGLSIAEVALKELIDLE 469
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A RWE+A +R +RRM KK G S IE PS+
Sbjct: 470 PFNSGNYVLLANLYAETGRWEEAGDVRKLMRRMSAKKAPGQSSIE-EPSL 518
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 86/203 (42%), Gaps = 45/203 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW TMI G++ G E + +F+EM ++ E P+ T + VL C+ A +
Sbjct: 331 MRQRTVVSWNTMISGFSLNGQGVEGIDLFREMMRSGE-NPDAVTFLGVLGCCAHAGAANV 389
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ + + + Y + A + Y G + V
Sbjct: 390 GQEIFQSMQSEYGI-------EAGVEHY------GCMVDVL------------------- 417
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIV 177
GR L + +I G + P+ + AL+SAC +H GL I A+ + ++
Sbjct: 418 ----GRSGLLEEAHALIQGMPMRPNAAIWGALLSACRAHAGLS----IAEVALKELIDLE 469
Query: 178 P-QTQHYACVVDMYGRAGLLEEA 199
P + +Y + ++Y G EEA
Sbjct: 470 PFNSGNYVLLANLYAETGRWEEA 492
>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 184/294 (62%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP ++ VSW+ MI +A+ +A+ +FQ M + ++ PN T+VNVL AC+ ++AL
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALE 303
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI R S+ ++ NA+I MY +CG++ + +VF+ + +D++SW+++IS
Sbjct: 304 QGKLIHGYILRRGLDSILPVL-NALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIY 362
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G++A+Q+F MI G P ++FI ++ ACSH GLV++G ILF++M + Y I P
Sbjct: 363 GMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPG 422
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA I +M E +VWG+LL +CRIH N E+ + L
Sbjct: 423 MEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLF 482
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A W +A + + GL+K GCSWIEV ++
Sbjct: 483 ELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVY 536
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 19/203 (9%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS----SISAL 58
+R + W + A G +E + ++ +M + T VL AC S+S L
Sbjct: 141 ERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG-IPSDRFTYTFVLKACVVSELSVSPL 199
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H++I R+ + V ++++Y K G V A VF + K+ +SWS +I+
Sbjct: 200 QKGKEIHAHI-LRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258
Query: 119 LAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMS 171
A N +AL+LF LM++ + P+ VT + ++ AC+ ++Q G IL + +
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLD 318
Query: 172 TVYEIVPQTQHYACVVDMYGRAG 194
++ ++ ++ MYGR G
Sbjct: 319 SILPVL------NALITMYGRCG 335
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVG 95
E P + T +++ +C+ ++LS G VH +S+ +D + +INMY + G +
Sbjct: 73 EPNPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFD--QDPFLATKLINMYYELGSID 130
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A +VF+ + + W+ + LAM GCG++ L L+ M G+ D T+ ++ AC
Sbjct: 131 RARKVFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKAC 189
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV W+ MI GYA+ G EA+ +F+ M K+ + +PN+ TLV+VLSAC+ + ++
Sbjct: 67 MARRDVVXWSAMIAGYAQNGRSNEALELFEXM-KSAQIKPNDVTLVSVLSACAQLGSVET 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + SY+ +R +S + V +A++ MY KCG++ A Q+F+ L +D ++W+++I GLA
Sbjct: 126 GERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLA 184
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG A+ L++ M V P+++TF+ L++AC+H G V+ GL F++M + + I P
Sbjct: 185 INGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEFFRSMRSDHNISPNI 244
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+VD++ R+G L +A FI M +E +WG LL+A RIH N E+ + ++L+
Sbjct: 245 EHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLE 304
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A RW++A K+R ++ ++K SW+EV +
Sbjct: 305 LEPDNSGNYVILSNIYASASRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRV 356
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 2/169 (1%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
EPBE TL VLS C+ + L G + + +L + +V A++ MYVKCG V
Sbjct: 3 EPBEITLATVLSICAKLGDLEMGLRIKKLXDNK-NLGSNMIVSTAMLEMYVKCGAVDDGR 61
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
VF+ +A +D++ WS +I+G A NG +AL+LF M + P+DVT ++++SAC+ G
Sbjct: 62 LVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLG 121
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
V+ G + + + ++ + ++ MY + G + +A ++P
Sbjct: 122 SVETGERIGSYVES-RGLISNVYVASALLGMYSKCGNIIKARQIFDKLP 169
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 173/287 (60%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ +SW M+ GY GF E+A+ +F +M +++ +P + T ++AC + AL
Sbjct: 390 MPYKNELSWMVMVSGYVHGGFAEDALKLFNKM-RSENVKPCDYTYAGAIAACGELGALKH 448
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I + SN GNA+I MY +CG V A +F ++ D +SW+ +IS L
Sbjct: 449 GKQLHGHI-VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALG 507
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL+LF M+ G++PD ++F+ +++AC+H GLVD+G F++M + I+P
Sbjct: 508 QHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGE 567
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY ++D+ GRAG + EA I+ MP E S+W A+L+ CR + E+ +L
Sbjct: 568 DHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFK 627
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
GT+ L+SNT++ A W DA ++R +R G+KK+ GCSWIE
Sbjct: 628 MTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIE 674
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 120/256 (46%), Gaps = 41/256 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------------------------- 35
MP +D ++WTTM+ GY RG A SVF+E++
Sbjct: 223 MPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELF 282
Query: 36 -----KEAEPNEATLVNVLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINM 87
+ +E T +VLSAC+++ + G+ VH I + + V NA++
Sbjct: 283 RRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTF 342
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y KCG++ +A ++F+ + KD++SW+T++SG + C +A+++F M + +++++
Sbjct: 343 YSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEM----PYKNELSW 398
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF---IR 204
+ ++S HGG + L LF M + + P YA + G G L+ + I
Sbjct: 399 MVMVSGYVHGGFAEDALKLFNKMRS-ENVKPCDYTYAGAIAACGELGALKHGKQLHGHIV 457
Query: 205 EMPIEAEWSVWGALLN 220
++ E S AL+
Sbjct: 458 QLGFEGSNSAGNALIT 473
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 48/287 (16%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFG 61
K DVV W MI GY G EA +F+ M E P +E T +VLSAC+++ + G
Sbjct: 257 KFDVV-WNAMISGYVHSGMAVEAFELFRRM--VLERVPLDEFTFTSVLSACANVGLFAHG 313
Query: 62 QYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIA--------------------- 97
+ VH I + + V NA++ Y KCG++ +A
Sbjct: 314 KSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSG 373
Query: 98 ----------IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
++VF + YK+ +SW ++SG G AL+LF+ M V P D T+
Sbjct: 374 YVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTY 433
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIRE 205
I+AC G + G L + ++ + + A ++ MY R G ++EA
Sbjct: 434 AGAIAACGELGALKHGKQLH---GHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLV 490
Query: 206 MPIEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVSVGT 248
MP + W A+++A H + E+FD + E + +S T
Sbjct: 491 MP-NIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLT 536
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD V +I YA AV+VF+ + + P++ + +LSA + +S
Sbjct: 118 RRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRH 177
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKC------------------------------ 91
+ S + L V NA++ +Y+KC
Sbjct: 178 CAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVG 237
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GDVG A VF + K + W+ +ISG +G +A +LF M++ V D+ TF
Sbjct: 238 YVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTF 297
Query: 148 IALISACSHGGLVDQG 163
+++SAC++ GL G
Sbjct: 298 TSVLSACANVGLFAHG 313
>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
Length = 659
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 181/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +++++SW MI Y + +AV ++ +MEK + EP+ T +VL AC +SAL
Sbjct: 248 LERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCR-VEPDAITFASVLPACGDLSALLL 306
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ + L + L+ N++I+MY +CG + A +VF+ + ++D+ SW+++IS
Sbjct: 307 GRRIHEYVEKK-KLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYG 365
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G A+ LF+ M+ +G PD + F+A++SACSH GL+D+G I FK M+ Y I P+
Sbjct: 366 MTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRI 425
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++EA I++MPIE VW LL++CR+ N ++ L+
Sbjct: 426 EHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQ 485
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A RW++ +IR ++R ++K G S +E+N +
Sbjct: 486 LAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQV 537
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VV + MI Y ++ + VF+EM P+ T VL ACS L +
Sbjct: 79 MSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGG-FRPDNYTYPCVLKACSCSENLRY 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + L + VGN +I MY KCG + A +VF+ + +KD++SW+++++G A
Sbjct: 138 GLLIHGDV-LKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYA 196
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
N AL++ M G PD T +L+ A ++
Sbjct: 197 HNMRFDDALEICREMEDYGQKPDGCTMASLMPAVAN 232
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 43/221 (19%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSW +M+ GYA ++A+ + +EME + +P+ T+ +++ A ++ S+ +
Sbjct: 183 KDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQ-KPDGCTMASLMPAVANTSSENV--- 238
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+YV+ ++F L K++ISW+ +I N
Sbjct: 239 -----------------------LYVE--------KIFVNLERKNLISWNVMIRVYMKNS 267
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE---IVPQT 180
QA+ L+ M V PD +TF +++ AC G L L+L + + E + P
Sbjct: 268 LPTQAVDLYLQMEKCRVEPDAITFASVLPAC--GDL--SALLLGRRIHEYVEKKKLCPNL 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY R G L++A+ M + + W +L++A
Sbjct: 324 LLENSLIDMYARCGCLDDAKRVFDRMKFR-DVASWTSLISA 363
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 5/129 (3%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+G ++ Y CG+ G+ +VF+ ++ ++++ ++ +I N L +F M+ G
Sbjct: 55 LGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGG 114
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLE 197
PD+ T+ ++ ACS + GL++ V ++ + ++ MYG+ G L
Sbjct: 115 FRPDNYTYPCVLKACSCSENLRYGLLIH---GDVLKVGLDFNLFVGNGLIAMYGKCGCLF 171
Query: 198 EAEAFIREM 206
EA EM
Sbjct: 172 EARRVFDEM 180
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 180/288 (62%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT+MI ++ G EA+ +F+EM+ +PN T+ +L AC +I+AL G+
Sbjct: 350 NVVSWTSMIACCSQNGRDIEALELFREMQ-IAGVKPNSVTIPCLLPACGNIAALMHGKAA 408
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + S R +S VG+A+I+MY KCG + + F+ + K+++ W+ VI+G AM+G
Sbjct: 409 HCF-SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGK 467
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A+++F LM +G PD ++F ++SACS GL ++G F +MS+ Y I + +HYA
Sbjct: 468 AKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYA 527
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V + RAG LE+A A IR MP+ + VWGALL++CR+H N + + ++L +
Sbjct: 528 CMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPS 587
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A W + N++RD ++ GL+K GCSWIEV +
Sbjct: 588 NPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKV 635
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 99/170 (58%), Gaps = 2/170 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ +V S++T+I +++ A+S F +M T+ P+ L + + AC+ +SAL
Sbjct: 74 VPEPNVFSFSTLIYAFSKFHQFHHALSTFSQM-LTRGLMPDNRVLPSAVKACAGLSALKP 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH I++ + V +++++MY+KC + A +VF+ + D++SWS +++ A
Sbjct: 133 ARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYA 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
GC +A +LFS M +GV P+ +++ +I+ +H GL + +++F M
Sbjct: 192 RQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 19/282 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++SW MI G+ G EAV +F +M + EP+ T+ +VL A + L G +
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDMH-LRGFEPDGTTISSVLPAVGDLEDLVMGILI 272
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ + L V +A+I+MY KC QVF+ + + D+ S + I GL+ NG
Sbjct: 273 HGYV-IKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQ 331
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+L+LF + G+ + V++ ++I+ CS G + L LF+ M + + P +
Sbjct: 332 VESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQ-IAGVKPNSVTIP 390
Query: 185 CVVDMYGRAGLL---EEAEAFIREMPIEAEWSVWGALLN---AC-RIHRNDEMFDPI-RQ 236
C++ G L + A F I + V AL++ C RI + FD I +
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
LV V G +A + ++A +I D ++R G K
Sbjct: 451 NLVCWNAVIAG--------YAMHGKAKEAMEIFDLMQRSGQK 484
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 92/207 (44%), Gaps = 40/207 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +++V W +I GYA G +EA+ +F M+++ + +P+ + VLSACS
Sbjct: 447 IPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQ-KPDIISFTCVLSACSQSGLTEE 505
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G Y + +S++Y GI +V + ++ +++ L+
Sbjct: 506 GSYYFNSMSSKY----------------------GIEARVEH---------YACMVTLLS 534
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G QA + M +N PD + AL+S+C V G + A ++E+ P
Sbjct: 535 RAGKLEQAYAMIRRMPVN---PDACVWGALLSSCRVHNNVSLGEV---AAEKLFELEPSN 588
Query: 181 Q-HYACVVDMYGRAGLLEEAEAFIREM 206
+Y + ++Y G+ E +R+M
Sbjct: 589 PGNYILLSNIYASKGMWNEVNR-VRDM 614
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 178/292 (60%), Gaps = 5/292 (1%)
Query: 1 MP--KRDVVSWTTMIGGYAERGFCEEAVSVFQEME--KTKEAEPNEATLVNVLSACSSIS 56
MP RD+VSW ++ +++ G +A+ ++ M EP+ TLV+VLS+C+ +
Sbjct: 227 MPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLG 286
Query: 57 ALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A S G V Y+ + +N+ + NA+IN Y +CG + A Q+FN + K ++SW+ +
Sbjct: 287 ARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQAQQLFNEMPRKSIVSWTAL 346
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I+G M+G G A+ LF M+ G+ PD+V + L+SACSH G+ D+G F AM + Y+
Sbjct: 347 ITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSHAGMYDEGRKYFSAMESAYQ 406
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P +HY C+VD+ GRAG L+EA I MP+ A+ +VWGALL AC+IH+N E+ +
Sbjct: 407 LRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAF 466
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++ + +VG + LM+N + + + ++R +R GLKK+ GCS++E
Sbjct: 467 EHVIEVEPTNVGYYVLMANIYTDTGQLDCVVRVRAMMRERGLKKEPGCSYVE 518
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 8/168 (4%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWSTVISGLAMNGCGRQALQLFSLMI- 136
V N +I++Y + G +A QVF+ + A +D++SW+ V+S + NG AL L+S M
Sbjct: 204 VANCLISVYARRG-AALARQVFDEMPAASRDLVSWNAVLSAHSQNGLAVDALDLYSRMRG 262
Query: 137 --INGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYACVVDMYGRA 193
+GV PD VT ++++S+C+H G GL + + M + Q +++ Y R
Sbjct: 263 CDGHGVEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARC 322
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
G L +A+ EMP ++ S W AL+ +H + E+ + Q +V++
Sbjct: 323 GCLPQAQQLFNEMPRKSIVS-WTALITGYGMHGHGEVAINLFQTMVSE 369
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 183/288 (63%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R VVS++ M+ Y EA+ +F+E+ K EP+++ +++VL AC+++ AL
Sbjct: 179 MPERSVVSYSAMLAAYVRGNRFREALELFRELFSVK-IEPSDSCVMSVLCACANLGALDV 237
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V+S++ V + + A+I+M+ KCG + A+ VF K + W+ ++SGLA
Sbjct: 238 GRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLA 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G Q ++ F M+ +G+ PD+VTF+AL+S CSH GLV++GL F M + + + P
Sbjct: 298 MHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTV 357
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+ CVVD+ GRAGL+++A I EMP E ++WGALLNACR+++N E+ + Q L+
Sbjct: 358 EHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGALLNACRVYKNVEVGELAAQWLIK 417
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + + + + A RW++ K++ +++ +G +K GCS IEV
Sbjct: 418 DEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEV 465
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 120/279 (43%), Gaps = 38/279 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ TM YA A+ + + M + P+ T +L ACS+++ L GQ +H
Sbjct: 55 YNTMFRVYAASPTPLHALLLHRHMFRHGPP-PDTYTFPFLLKACSALAHLLKGQELHCQ- 112
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG--- 125
+ ++ L V N++I++Y + A +VF+ + Y+D+ SW+T+++ A N C
Sbjct: 113 ALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYA-NSCSVEA 171
Query: 126 -----------------------------RQALQLFSLMIINGVFPDDVTFIALISACSH 156
R+AL+LF + + P D ++++ AC++
Sbjct: 172 ARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACAN 231
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G +D G ++ + ++ ++DM+ + G +E A + E E W
Sbjct: 232 LGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFKCGSIEHA-LLVFEGAKEKHVGEWT 290
Query: 217 ALLNACRIHRNDEMFDPIRQELVNK--KGVSVGTFALMS 253
A+L+ +H E +++V+ K V AL+S
Sbjct: 291 AMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLS 329
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 190/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W+ MI GYA+ G EA+ +F+ M K+ + +PN+ TLV+VLSAC+ + ++
Sbjct: 289 MARRDVVTWSAMIAGYAQNGRSNEALELFENM-KSAQIKPNDVTLVSVLSACAQLGSVET 347
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + SY+ +R +S + V +A++ MY KCG++ A Q+F+ L +D ++W+++I GLA
Sbjct: 348 GERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLA 406
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG A+ L++ M V P+++TF+ L++AC+H G V+ GL F++M + + I P
Sbjct: 407 INGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNI 466
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+VD++ R+G L +A FI M +E +WG LL+A RIH N E+ + ++L+
Sbjct: 467 EHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLE 526
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A RW++A K+R ++ ++K SW+EV +
Sbjct: 527 LEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRV 578
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R +VSW MI YA+ G + +FQ M+ + EPNE TL VLS C+ + L
Sbjct: 188 MRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQD-EMCEPNEITLATVLSICAKLGDLEM 246
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + ++ +L + +V A++ MYVKCG V VF+ +A +D+++WS +I+G A
Sbjct: 247 GLRIKK-LNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYA 305
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL+LF M + P+DVT ++++SAC+ G V+ G + + + ++
Sbjct: 306 QNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVES-RGLISNV 364
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ ++ MY + G + +A ++P + + W +++
Sbjct: 365 YVASALLGMYSKCGNIIKARQIFDKLP-QRDNVTWNSMI 402
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 6/170 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + I Y+ EA+ F M + T+ + +C+S+ A+
Sbjct: 56 IPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNN-VRIVCFTIPPIFKSCASLLAIDV 114
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS + RY S NA+IN Y K D+G A +F+ + KD I+++ +IS +
Sbjct: 115 GKQVHSLV-IRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYS 173
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+G A +LF M + V++ A+IS + G +G I+F+ M
Sbjct: 174 RSGEVLAARELFDKMRDRSI----VSWNAMISCYAQNGDYHKGWIIFQRM 219
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSW+ +IGG+A G + A+ +F+ M++ + PN T+ VLSAC + AL G+ +
Sbjct: 250 NVVSWSAVIGGFASSGDTDRALELFRRMQQ-QWLSPNVVTMATVLSACVDLLALRLGREL 308
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + + +L +LV N +INMY KCG V A +VF+ + +D+ISW+++++G M+G
Sbjct: 309 HGH-AMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGL 367
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF+ M V PD VTF+A++SAC H G V +G LF M ++I P +HY
Sbjct: 368 CDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYT 427
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V + GRAGLL +A + MP+ + VWGALLN+CRIH + M + ++ +
Sbjct: 428 CMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQ 487
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G L++N +A W+++ K+R + GL+K G SWIEV+ +
Sbjct: 488 STGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKV 535
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 5/172 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS--ALSF 60
+ D V+WT ++ +A G + + +F EM+++ E N ++ LSAC AL+
Sbjct: 107 RPDAVTWTALLSAHARSGKHADVLQLFGEMQRSG-CEGNAESMAVALSACPYAGDLALAK 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + V N++I MY K G++ A + F K+ ++W+T+I+ A
Sbjct: 166 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 225
Query: 121 MNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
G +AL + + M I V P+ V++ A+I + G D+ L LF+ M
Sbjct: 226 AAGLCDEALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRM 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW +M+ GY G C+EA+++F +M EP+ T V VLSAC ++
Sbjct: 347 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGAT-VEPDGVTFVAVLSACGHAGRVTE 405
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + + + +S S ++ + + G + A ++ + + D+ W +++
Sbjct: 406 GRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSC 465
Query: 120 AMNG 123
++G
Sbjct: 466 RIHG 469
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
M A PN TL L A +S S VH++ + L + V ++ Y +
Sbjct: 1 MRALSPALPNSYTLPLALRAAASPRVAS---AVHAH-ALHLGLHAQHDVAGQILAAYSRL 56
Query: 92 GDVGIAIQVFN-MLAYKDMISWSTVISGLAMNGCGRQALQ-LFSLMIINGVFPDDVTFIA 149
G A +VF+ M + W+ +IS + +GC A + F+ M G PD VT+ A
Sbjct: 57 GRAADARRVFDAMPPGRTTFHWNALISAYS-SGCDPDAARDAFARMAAAGTRPDAVTWTA 115
Query: 150 LISACSHGGLVDQGLILFKAM 170
L+SA + G L LF M
Sbjct: 116 LLSAHARSGKHADVLQLFGEM 136
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLA----YKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
NA+I+ Y D A F +A D ++W+ ++S A +G LQLF M
Sbjct: 79 NALISAYSSGCDPDAARDAFARMAAAGTRPDAVTWTALLSAHARSGKHADVLQLFGEMQR 138
Query: 138 NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD----MYGRA 193
+G + + +SAC + G D L KA+ + Y V + MYG+
Sbjct: 139 SGCEGNAESMAVALSACPYAG--DLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKL 196
Query: 194 GLLEEAEAFIRE 205
G +++A+ R+
Sbjct: 197 GEMDDAKKAFRD 208
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 4/294 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ + SW MI GY + G E+A+S+F+EM+K+ E PN T+ +LSAC+ + ALS G
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKS-EFSPNPVTITCILSACAQLGALSLG 439
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH + + D S V A+I MY KCG + A ++F+++ K+ ++W+T+ISG +
Sbjct: 440 KWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL +F M+ +G+ P VTF+ ++ ACSH GLV +G +F +M Y P +
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAG L+ A FI M IE SVW LL ACRIH++ + + ++L
Sbjct: 559 HYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV--NPSIF 293
+VG L+SN + + A +R ++ L K G + IE+ P +F
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVF 672
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D + W TMI GY + E++ VF+++ + TL+++L A + + L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS ++T+ + V I++Y KCG + + +F D+++++ +I G
Sbjct: 240 GMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYT 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLIL----------FK 168
NG +L LF ++++G T ++L+ H L+ G L
Sbjct: 299 SNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVST 358
Query: 169 AMSTVYEIVPQTQ---------------HYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
A++TVY + + + + ++ Y + GL E+A + REM ++E+S
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-KSEFS 417
Query: 214 ----VWGALLNAC 222
+L+AC
Sbjct: 418 PNPVTITCILSAC 430
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 19/244 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+V++ MI GY G E ++S+F+E+ + A +TLV+++ + +
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG-ARLRSSTLVSLVPVSGHLMLI---Y 339
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y LS ++ V A+ +Y K ++ A ++F+ K + SW+ +ISG N
Sbjct: 340 AIHGYCLKSNFLSHAS-VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A+ LF M + P+ VT ++SAC+ G + G V+++V T
Sbjct: 399 GLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-------KWVHDLVRSTDF 451
Query: 183 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ + + MY + G + EA M + E + W +++ +H + I
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT-WNTMISGYGLHGQGQEALNIFY 510
Query: 237 ELVN 240
E++N
Sbjct: 511 EMLN 514
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 5/205 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ DV + ++ G++ ++SVF + K+ + +PN +T +SA S G+
Sbjct: 80 RPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGR 139
Query: 63 YVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + D + L+G+ ++ MY K V A +VF+ + KD I W+T+ISG
Sbjct: 140 VIHGQAVVDGCDSEL--LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 122 NGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +++Q+F +I D T + ++ A + + G+ + +++T
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-HSLATKTGCYSHD 256
Query: 181 QHYACVVDMYGRAGLLEEAEAFIRE 205
+ +Y + G ++ A RE
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFRE 281
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K++ V+W TMI GY G +EA+++F EM + P T + VL ACS +
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG-ITPTPVTFLCVLYACSHAGLVKE 539
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + + + RY S ++++ + G + A+Q ++ + S W T++
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 120 AMNGCGRQAL----QLFSLMIINGVFPDDVTFIALIS 152
++ A +LF L PD+V + L+S
Sbjct: 600 RIHKDTNLARTVSEKLFELD------PDNVGYHVLLS 630
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW MI GYA+ G EEA+ +F +M K N + L LS+C+ I+AL
Sbjct: 365 MPQRDCISWAAMISGYAQSGQSEEALHLFIKM-KRDGGILNRSALACALSSCAEIAALEL 423
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + GNA++ MY KCG + A VF + KD++SW+T+I+G A
Sbjct: 424 GKQLHGRL-VKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYA 482
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G++AL LF M + + PDDVT + ++SACSH G VD+G+ F +M Y I
Sbjct: 483 RHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANA 541
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L+EA ++ MP + + WGALL A RIH + E+ + +++
Sbjct: 542 KHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFE 601
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + RW + ++R ++R G+KK G SW+E+
Sbjct: 602 MEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEI 649
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW M+ G+A+ GF EEA +F +M NE + +LSA +
Sbjct: 148 MPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM-----LVKNEISWNGLLSAYVQNGRIED 202
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ D + + N ++ YV+ + A +F+ + +D ISW+ +I+G A
Sbjct: 203 ARRL---FDSKMDWEI--VSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYA 257
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A +LF + I VF + A++S G++D+ +F+ M E+
Sbjct: 258 QNGLLSEARRLFEELPIRDVF----AWTAMVSGFVQNGMLDEATRIFEEMPEKNEV---- 309
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++ Y ++ +E+A +MP
Sbjct: 310 -SWNAMIAGYVQSQQIEKARELFDQMP 335
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 19/204 (9%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V W I Y +G CE A+SVF M + N ++S S + + V
Sbjct: 59 DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNA-----MISGYLSNNKFDCARKV 113
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ R DL + N +++ YVK G++ A +FN + KD++SW+ ++SG A NG
Sbjct: 114 FEKMPDR-DL----ISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGF 168
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A ++F M++ +++++ L+SA G ++ LF + +EIV +
Sbjct: 169 VEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRLFDS-KMDWEIVS----WN 219
Query: 185 CVVDMYGRAGLLEEAEAFIREMPI 208
C++ Y R L++A + MP+
Sbjct: 220 CLMGGYVRKKRLDDARSLFDRMPV 243
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 37/212 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV +WT M+ G+ + G +EA +F+EM E NE + +++ +
Sbjct: 272 LPIRDVFAWTAMVSGFVQNGMLDEATRIFEEM-----PEKNEVSWNAMIAGYVQSQQIEK 326
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + +R S N ++ Y +CG++ A +F+ + +D ISW+ +ISG A
Sbjct: 327 ARELFDQMPSRNTSS-----WNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYA 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
+G +AL LF M +G + +S+C+ HG LV G
Sbjct: 382 QSGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGF----- 436
Query: 170 MSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA 199
QT + A ++ MYG+ G +EEA
Sbjct: 437 ---------QTGYIAGNALLAMYGKCGSIEEA 459
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 26/239 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SW M+ GY + G A ++F +M + +V+S + +S +
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-----------DVVSWNAMLSGFAQ 165
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+V + V N + N +++ YV+ G + A ++F+ +++SW+ ++ G
Sbjct: 166 NGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGY 225
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A LF M + D +++ +I+ + GL+ + LF+ + +
Sbjct: 226 VRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLLSEARRLFEELP-----IRD 276
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPI 234
+ +V + + G+L+EA EMP + E S W A++ + +I + E+FD +
Sbjct: 277 VFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVS-WNAMIAGYVQSQQIEKARELFDQM 334
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 22/159 (13%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N I+ Y++ G A+ VFN + + ++++ +ISG N A ++F M
Sbjct: 64 NRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM------ 117
Query: 142 PDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLE 197
PD +++ ++S G + LF M P+ + ++ + + G +E
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQM-------PEKDVVSWNAMLSGFAQNGFVE 170
Query: 198 EAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD 232
EA +M ++ E S W LL+A RI +FD
Sbjct: 171 EARKIFDQMLVKNEIS-WNGLLSAYVQNGRIEDARRLFD 208
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSW+ +IGG+A G + A+ +F+ M++ + PN T+ VLSAC + AL G+ +
Sbjct: 250 NVVSWSAVIGGFASSGDTDRALELFRRMQQ-QWLSPNVVTMATVLSACVDLLALRLGREL 308
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + + +L +LV N +INMY KCG V A +VF+ + +D+ISW+++++G M+G
Sbjct: 309 HGH-AMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGL 367
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF+ M V PD VTF+A++SAC H G V +G LF M ++I P +HY
Sbjct: 368 CDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYT 427
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V + GRAGLL +A + MP+ + VWGALLN+CRIH + M + ++ +
Sbjct: 428 CMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQ 487
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G L++N +A W+++ K+R + GL+K G SWIEV+ +
Sbjct: 488 STGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKV 535
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 5/172 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS--ALSF 60
+ D V+WT ++ +A G + + +F EM+++ E N ++ LSAC AL+
Sbjct: 107 RPDAVTWTALLSAHARSGKHADVLQLFGEMQRSG-CEGNAESMAVALSACPYAGDLALAK 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + V N++I MY K G++ A + F K+ ++W+T+I+ A
Sbjct: 166 GKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYA 225
Query: 121 MNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+AL + + M I V P+ V++ A+I + G D+ L LF+ M
Sbjct: 226 AARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRM 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW +M+ GY G C+EA+++F +M EP+ T V VLSAC ++
Sbjct: 347 MKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGAT-VEPDGVTFVAVLSACGHAGRVTE 405
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + + + +S S ++ + + G + A ++ + + D+ W +++
Sbjct: 406 GRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSC 465
Query: 120 AMNG 123
++G
Sbjct: 466 RIHG 469
>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 579
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 180/288 (62%), Gaps = 4/288 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + W ++IGG+A+ + A+ +F+ M++ +ATL +VL AC+ ++ L G
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQA 234
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +YD + ++ NA+++MY KCG + A +VFN + +D+I+WST+ISGLA NG
Sbjct: 235 HVHI-VKYDQDL--ILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGY 291
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL+LF LM +G P+ +T + ++ ACSH GL++ G F++M +Y I P +HY
Sbjct: 292 SQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYG 351
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ G+AG L++A + EM E + W LL ACR+ RN + + ++++
Sbjct: 352 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 411
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ ++SN +A + +W+ +IR +R +G+KK+ GCSWIEVN I
Sbjct: 412 DAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQI 459
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI Y++ ++A+ + M + PN T +VL AC+ +S +
Sbjct: 74 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDG-VRPNVYTYSSVLRACNGMSDV-- 130
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I+++ K G+ A+ VF+ + D I W+++I G A
Sbjct: 131 -RMLHCGI-IKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 188
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL+LF M G + T +++ AC+ L++ G M IV
Sbjct: 189 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYD 242
Query: 181 QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Q +VDMY + G LE+A +M E + W +++
Sbjct: 243 QDLILNNALVDMYCKCGSLEDARRVFNQMK-ERDVITWSTMISG 285
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W+TMI G A+ G+ +EA+ +F E+ K+ +PN T+V VL ACS L
Sbjct: 271 MKERDVITWSTMISGLAQNGYSQEALKLF-ELMKSSGTKPNYITIVGVLFACSHAGLLED 329
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVI 116
G Y + Y ++ +I++ K G + A+++ N M D ++W T++
Sbjct: 330 GWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 96/187 (51%), Gaps = 22/187 (11%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ AT ++ C S A+ G + ++ + LV N +INMYVK + A Q+
Sbjct: 12 DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLV-NVLINMYVKFNLLNDAHQL 70
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
F+ + +++ISW+T+IS + ++AL+L LM+ +GV P+ T+ +++ AC+
Sbjct: 71 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV 130
Query: 156 ---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H G++ +GL S VY + ++D++ + G E+A + EM + +
Sbjct: 131 RMLHCGIIKEGL-----ESDVYV-------RSALIDVFAKLGEPEDALSVFDEM-VTGDA 177
Query: 213 SVWGALL 219
VW +++
Sbjct: 178 IVWNSII 184
>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
Length = 726
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 175/293 (59%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+++W T+I C + + M +T+ P+ AT++++L CS ++A
Sbjct: 314 MKARDIITWNTIIASCVHSEDCNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKRQ 372
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + L VGN +I MY KCG + + QVF ++ KD+++W+ +IS
Sbjct: 373 GKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 431
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A++ F M G+ PD V F+A+I ACSH GLV++GL F M Y+I P+
Sbjct: 432 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 491
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ R+ LL++AE FI MP++ + S+WGALL+ACR+ + E+ + + + ++
Sbjct: 492 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 551
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A +W+ IR I+ GLKK GCSW+E+ ++
Sbjct: 552 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 604
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 47/265 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQE-----MEKTKEAEPNEATLVNVLSACSSI 55
MP RDVVSW ++I GY G+ EA+ ++ + ME + +P+ T+ ++L AC +
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHL 235
Query: 56 SALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
L FG+YVH Y I++ Y+ + N +INMY KCG++ + +VF+ + KD +SW++
Sbjct: 236 GDLEFGKYVHDYMITSGYECDTT--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 293
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA----- 169
+I+ NG +L++F M D +T+ +I++C H + GL +
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKAR----DIITWNTIIASCVHSEDCNLGLRMISRMRTEG 349
Query: 170 ----MSTVYEIVP----------QTQHYACV---------------VDMYGRAGLLEEAE 200
M+T+ I+P + + C+ ++MY + G L +
Sbjct: 350 VTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSF 409
Query: 201 AFIREMPIEAEWSVWGALLNACRIH 225
+ M + + W AL++AC ++
Sbjct: 410 QVFKLMKTK-DVVTWTALISACGMY 433
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 123/243 (50%), Gaps = 18/243 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W ++I G EA+S++ E ++ + +P+ T +V++AC+ +
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGLLDFEMA 134
Query: 62 QYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H + D+ + +GNA+I+MY + D+ A +VF + +D++SW+++ISG
Sbjct: 135 KSIHDRV---LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191
Query: 120 AMNGCGRQALQLFS------LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
NG +AL+++ + ++N PD +T +++ AC H G ++ G + M T
Sbjct: 192 NANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITS 251
Query: 174 -YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 232
YE T +++MY + G L ++ M + S W +++N +N +M D
Sbjct: 252 GYEC--DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINV--YIQNGKMGD 306
Query: 233 PIR 235
++
Sbjct: 307 SLK 309
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D SW+TM+ GYA+ G EA+ +F+EM+ + + TL +V+ C + AL
Sbjct: 168 MPEPDSASWSTMVSGYAQNGQAVEALKLFREMQ-AENVSSDAFTLASVVGVCGDLGALDL 226
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHSY+ + + + ++G A++ MY KCG + A++VF +A +D+ +WST+I+G A
Sbjct: 227 GKWVHSYMD-KEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYA 285
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +ALQLF M + P+ VTF +++SACSH GLV++G +F+ M T Y+I PQ
Sbjct: 286 IHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQI 345
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++ RAG++ A FI+ MPIE +W LL AC+ H ++ + I ++++
Sbjct: 346 KHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILK 405
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S + L+SN +A RW ++R ++ KK+ G S IE+N
Sbjct: 406 LDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEIN 454
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 14/235 (5%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W T+I GY+ A++++++M PN T VL AC + L GQ +HS I
Sbjct: 75 WNTIIRGYSISDSPITAIALYRDMFLCG-ISPNSYTFGFVLKACCKLLRLCEGQELHSQI 133
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L + N +I +Y CG + A +F+ + D SWST++SG A NG +A
Sbjct: 134 -VKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEA 192
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS---TVYEIVPQTQHYAC 185
L+LF M V D T +++ C G +D G + M ++V T
Sbjct: 193 LKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTA---- 248
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQ 236
+V MY + G L+ A + M E + + W ++ IH + E +FD +++
Sbjct: 249 LVGMYSKCGSLDNALKVFQGMA-ERDVTAWSTMIAGYAIHGHGEKALQLFDAMKR 302
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQ-YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
++ +LV + C+ + L Q ++ T+ S L+ ++ + + G V A +
Sbjct: 6 DQGSLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTL---SGHVAYAHR 62
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ + ++ W+T+I G +++ A+ L+ M + G+ P+ TF ++ AC
Sbjct: 63 IFSCTHHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLR 122
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ +G L + V + +T ++ +Y G ++ A EMP E + + W ++
Sbjct: 123 LCEGQELHSQIVKV-GLDFETPLVNGLIKLYAACGCMDYACVMFDEMP-EPDSASWSTMV 180
Query: 220 NA 221
+
Sbjct: 181 SG 182
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/278 (40%), Positives = 180/278 (64%), Gaps = 5/278 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW+ MI Y++ EEAV +F+EM +P +ATLV+VLSAC+ + L
Sbjct: 337 MPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAG-VDPIDATLVSVLSACAQLGCLDL 395
Query: 61 GQYVHS--YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++++ +S + L+V+ +GNA+I+M+ KCGDVG A ++F+ +A ++++SW+T+I
Sbjct: 396 GRWIYENYIVSNKIGLTVN--LGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMA 453
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A++G +A++LF + + PD +TF+ L+++CSH GLV +G FK M Y I P
Sbjct: 454 HAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEP 513
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HYAC++D+ G+ GLLEEA R MP+EA+ + WGALLNACR+H N E+ + +L
Sbjct: 514 RVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKL 573
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
V G + LMS +A ++W+ +R +R G
Sbjct: 574 VELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRG 611
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 131/273 (47%), Gaps = 39/273 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWTT++ GYA G +EA +F M PN TLV +SA + L+F
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263
Query: 61 GQYVHSYI-------STRYDLSVSNLVGN-----------------------AVINMYVK 90
G +H Y+ S D ++ ++ G +++N Y K
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAK 323
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CGD+ A Q+F + ++++SWS +I+ + +A+ LF MI GV P D T +++
Sbjct: 324 CGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSV 383
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SAC+ G +D G +++ +I ++DM+ + G + EA EM A
Sbjct: 384 LSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEM---A 440
Query: 211 EWSV--WGALLNACRIHRNDE----MFDPIRQE 237
E +V W ++ A +H E +F+ ++ E
Sbjct: 441 ERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGE 473
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 3/146 (2%)
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM- 135
S LVGNA+++ Y + A +VF+ + +D++SW+T++ G A G +A +LF M
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
++ G+ P+ VT +A +SA GL+ G++L K + T + +VDM+G+ G
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYV-TEGGVARSVNLDNALVDMFGKCGC 295
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNA 221
+ A M ++ +S W +++NA
Sbjct: 296 VRYAREVFDGMEVKDVYS-WTSMVNA 320
>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Vitis vinifera]
Length = 732
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 190/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW ++ G+A+ G +A+ +F EM K ++ P+ T+V++L AC+SI AL
Sbjct: 409 MSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQ 467
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+++ T+ L L+ A+++MY KCGD+G A + F+ + +D++SWS++I+G
Sbjct: 468 GKWIHNFV-TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYG 526
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL+++S + G+ P+ V +++++SACSH GLVDQGL F +M+ + I P+
Sbjct: 527 SHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRL 586
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ RAG +EEA +F + M + V G LL+ACR N E+ D + +E+V
Sbjct: 587 EHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVI 646
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K + G + +++++A RW+ ++ +++ + LKK G S+IE++ +I
Sbjct: 647 LKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 18/236 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV+SWT MI G + + AV+VF+ M K++ P+ AT+ +VL+AC+ + +
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR-VMPSTATIASVLAACAELGSFPL 366
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH YI R L + + N+++ MY KCG + + VF+ ++ +D++SW+ ++SG
Sbjct: 367 GTSVHGYILRQRIKLDIPS--QNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGH 424
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG +AL LF+ M PD +T ++L+ AC+ G + QG ++ V +
Sbjct: 425 AQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQG-------KWIHNFVTK 477
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ C+ VDMY + G L A+ MP + + W +++ H E
Sbjct: 478 SCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSIIAGYGSHGKGE 532
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 13/211 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+SW +++ GYA+ G E + + M KT EP++ T +++SA + S L
Sbjct: 207 MDARDVISWNSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGV 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I R L + + ++I MY+KCG+V A ++F + +KD+ISW+ +ISGL
Sbjct: 266 GKMVHGHI-LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
N C A+ +F M+ + V P T ++++AC+ G G IL + + +
Sbjct: 325 QNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIK--LD 382
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I Q +V MY + G LE++ + M
Sbjct: 383 IPSQNS----LVTMYAKCGHLEQSCSVFDRM 409
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VV WTTMIG Y G + A S++ M + + +P+ T++ +LS + L
Sbjct: 109 MDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR-QGIQPSSVTMLGLLSGVLELVHL-- 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H+ + +Y + N+++N+Y KCG V A +F ++ +D+ISW++++SG A
Sbjct: 166 -QCLHACV-IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
G R+ LQL M +G+ PD TF +L+SA + HG ++ GL
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGL 278
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 8 SWTTMIGGYAERG-FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
S+ +I + G FC+ ++ + M T + P+ T +++ AC+S+ S G H
Sbjct: 15 SYNAIINRLSTAGAFCDVLLT-YSSMLST-DTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+ S + + ++IN Y K G A +VF+ + ++++ W+T+I G
Sbjct: 73 RVIVD-GYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 127 QALQLFSLMIINGVFPDDVTFIALISA--------CSHGGLVDQGLILFKAMSTVYEIVP 178
A ++++M G+ P VT + L+S C H ++ G A++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALAN------ 185
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREM 206
++++Y + G +E+A+A M
Sbjct: 186 ------SMLNVYCKCGRVEDAQALFELM 207
>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g03880, mitochondrial; Flags: Precursor
gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 179/288 (62%), Gaps = 4/288 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + W ++IGG+A+ + A+ +F+ M++ +ATL +VL AC+ ++ L G
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQA 282
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +YD + ++ NA+++MY KCG + A++VFN + +D+I+WST+ISGLA NG
Sbjct: 283 HVHI-VKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL+LF M +G P+ +T + ++ ACSH GL++ G F++M +Y I P +HY
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ G+AG L++A + EM E + W LL ACR+ RN + + ++++
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A + +W+ +IR +R G+KK+ GCSWIEVN I
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI Y++ ++A+ + M + PN T +VL +C+ +S +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDV-- 178
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I+++ K G+ A+ VF+ + D I W+++I G A
Sbjct: 179 -RMLHCGI-IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL+LF M G + T +++ AC+ L++ G M IV
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYD 290
Query: 181 QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Q +VDMY + G LE+A +M E + W +++
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W+TMI G A+ G+ +EA+ +F+ M K+ +PN T+V VL ACS L
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERM-KSSGTKPNYITIVGVLFACSHAGLLED 377
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVI 116
G Y + Y + +I++ K G + A+++ N M D ++W T++
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ AT ++ C S A+ G + ++ + LV N +INMYVK + A Q+
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLV-NVLINMYVKFNLLNDAHQL 118
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
F+ + +++ISW+T+IS + ++AL+L LM+ + V P+ T+ +++ +C+
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 156 ---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H G++ +GL S V+ + ++D++ + G E+A + EM + +
Sbjct: 179 RMLHCGIIKEGL-----ESDVFV-------RSALIDVFAKLGEPEDALSVFDEM-VTGDA 225
Query: 213 SVWGALL 219
VW +++
Sbjct: 226 IVWNSII 232
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 179/288 (62%), Gaps = 4/288 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + W ++IGG+A+ + A+ +F+ M++ +ATL +VL AC+ ++ L G
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQA 282
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +YD + ++ NA+++MY KCG + A++VFN + +D+I+WST+ISGLA NG
Sbjct: 283 HVHI-VKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL+LF M +G P+ +T + ++ ACSH GL++ G F++M +Y I P +HY
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ G+AG L++A + EM E + W LL ACR+ RN + + ++++
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A + +W+ +IR +R G+KK+ GCSWIEVN I
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI Y++ ++A+ + M + PN T +VL +C+ +S +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDV-- 178
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I+++ K G+ A+ VF+ + D I W+++I G A
Sbjct: 179 -RMLHCGI-IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL+LF M G + T +++ AC+ L++ G M IV
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYD 290
Query: 181 QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Q +VDMY + G LE+A +M E + W +++
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W+TMI G A+ G+ +EA+ +F+ M K+ +PN T+V VL ACS L
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERM-KSSGTKPNYITIVGVLFACSHAGLLED 377
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVI 116
G Y + Y + +I++ K G + A+++ N M D ++W T++
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ AT ++ C S A+ G + ++ + LV N +INMYVK + A Q+
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLV-NVLINMYVKFNLLNDAHQL 118
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
F+ + +++ISW+T+IS + ++AL+L LM+ + V P+ T+ +++ +C+
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 156 ---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H G++ +GL S V+ + ++D++ + G E+A + EM + +
Sbjct: 179 RMLHCGIIKEGL-----ESDVFV-------RSALIDVFAKLGEPEDALSVFDEM-VTGDA 225
Query: 213 SVWGALL 219
VW +++
Sbjct: 226 IVWNSII 232
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 180/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW ++I GYA++G C +F+ M + P+ T++N++SA + I AL
Sbjct: 322 MPCRDLVSWNSIIAGYAQKGDCLMVQRLFENM-VAENIWPDFVTIINLVSAAAEIGALHH 380
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H ++ R + + +G+A I+MY KCG + A VF + KD+ W+T+I+G A
Sbjct: 381 GRWIHGWV-VRMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFA 439
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +ALQLF M V P+ VTF+A+++ACSH G V QGL +F +M Y I P
Sbjct: 440 FHGYGSKALQLFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGV 498
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+G E + I MP++ S+WGA+L+ACR + N E+ + +EL+
Sbjct: 499 EHYGCLVDLLGRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLK 558
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN +A + RW+ ++KIR+ + G+KK GCS + V+
Sbjct: 559 LEPEKEGGYVLLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVD 607
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 120/263 (45%), Gaps = 47/263 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D VS+ MI GYA++G EA+ EM +P+E T++ +L C +
Sbjct: 188 MAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLG-LKPDEFTMLGLLICCGRLGDAQL 246
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST----- 114
G+ VH++I R + SNL+ NA+++MYVKC ++ IA +FN++ KD ISW+T
Sbjct: 247 GKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGY 306
Query: 115 --------------------------VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
+I+G A G +LF M+ ++PD VT I
Sbjct: 307 AKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTII 366
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEAF 202
L+SA + G + G ++ V + Q + +DMY + G ++ A
Sbjct: 367 NLVSAAAEIGALHHG-------RWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSIKRACMV 419
Query: 203 IREMPIEAEWSVWGALLNACRIH 225
RE+ E + +VW ++ H
Sbjct: 420 FREVT-EKDVTVWTTMITGFAFH 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 36/200 (18%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
PN +T + +L A +S + + H+ I+ + + N ++ +Y++ +G+A Q
Sbjct: 128 PNRSTFLFLLQASKFLSQV-MQIHCHAIITGSF---YYGYLQNTLMKIYLENEKMGLAYQ 183
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF +A D +S++ +I G A G +AL+ M+ G+ PD+ T + L+ C G
Sbjct: 184 VFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGD 243
Query: 160 VDQG-----------------LILFKAMSTVYE---------------IVPQTQHYACVV 187
G LIL A+ +Y + T + ++
Sbjct: 244 AQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMI 303
Query: 188 DMYGRAGLLEEAEAFIREMP 207
Y + G LE A F +MP
Sbjct: 304 AGYAKVGNLEIAHNFFEDMP 323
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 183/290 (63%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVV WT ++ GY + ++A+ F +M A PN+ TL +VLSAC+ + AL
Sbjct: 270 LPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVA-PNDFTLSSVLSACAQMGALDQ 328
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH YI + +++V+ +G A+++MY KCG + A++VF + K++ +W+ +I+GL
Sbjct: 329 GRLVHQYIECNKINMNVT--LGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGL 386
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G AL +F M+ +G+ P++VTF+ +++ACSHGG V++G LF+ M Y + P+
Sbjct: 387 AVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMKHAYHLKPE 446
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C+VDM GRAG LE+A+ I MP++ V GAL AC +H+ EM + I LV
Sbjct: 447 MDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPSPGVLGALFGACLVHKAFEMGEHIGNLLV 506
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N++ G++AL++N + WE A ++R ++ + + K G S IEV+
Sbjct: 507 NQQPNHSGSYALLANLYKMCQNWEAAAQVRKLMKGLRVVKAPGYSRIEVD 556
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 122/224 (54%), Gaps = 3/224 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +D V+WT +I GY + EA+ F +M + ++ + T+ ++L A + + FG
Sbjct: 169 PFQDTVAWTALINGYVKNDCPGEALKCFVKM-RLRDRSVDAVTVASILRAAALVGDADFG 227
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH + + + V +A+++MY KCG A +VFN L ++D++ W+ +++G
Sbjct: 228 RWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQ 287
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+ + AL+ F M+ + V P+D T +++SAC+ G +DQG ++ + + +I
Sbjct: 288 SNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIEC-NKINMNVT 346
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+VDMY + G ++EA MP++ ++ W ++N +H
Sbjct: 347 LGTALVDMYAKCGSIDEALRVFENMPVKNVYT-WTVIINGLAVH 389
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 4/175 (2%)
Query: 34 KTKEAEPNEATLVNVLSACS-SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
+ K +P++ T +L S SI+ F Y + +DL + +GNA+I + G
Sbjct: 100 RQKGVQPDKHTFPLLLKTFSKSIAQNPFMIYAQIF-KLGFDLDL--FIGNALIPAFANSG 156
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
V A QVF+ ++D ++W+ +I+G N C +AL+ F M + D VT +++
Sbjct: 157 FVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILR 216
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
A + G D G + + ++ ++DMY + G E+A E+P
Sbjct: 217 AAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELP 271
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 173/289 (59%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D V W MI YA+ G ++A+ +++ M T + P + T V V+ C+ +SAL
Sbjct: 257 MHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQ 316
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ + +T +D ++ LV NA+++MY KCG + A+ VF+ + KD ISW+T+IS
Sbjct: 317 GRAIHARVRATNFDANL--LVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSY 374
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G QAL L+ M + GV P +VTF+ L+SACSHGGLV GL F M + I P
Sbjct: 375 AYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPS 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
H+ C++D+ GR G L EAE ++ MPI+A W +LL AC+ H + + ++V
Sbjct: 435 VPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVV 494
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++ + G + L+SN +A A RW+D KIR + G+KK G SWIE+
Sbjct: 495 DRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 543
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 147/325 (45%), Gaps = 57/325 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--L 58
MP R+V +WT + ++ G EA+ F+ M ++ E P+ T +L+A + + A +
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAI 181
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H Y L + +VG AVI+MY KCG + A F L +K+ ++W+ +++
Sbjct: 182 DQGREIHRYARIS-GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 240
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
++G R+AL+LF M D V + A+I+A + G Q L L+++M ++ P
Sbjct: 241 YKLDGRDREALELFREMHD----ADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAP 296
Query: 179 QTQHYACVVD-----------------------------------MYGRAGLLEEAEAFI 203
+ + V+D MYG+ G L+EA
Sbjct: 297 KQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVF 356
Query: 204 REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS------VGTFALMSNTFA 257
M ++ E S W ++++ H + + + QE+ + +GV VG + S+
Sbjct: 357 HSMKLKDEIS-WNTIISSYAYHGHSDQALLLYQEM-DLQGVKPTEVTFVGLLSACSHGGL 414
Query: 258 GAD------RWEDANKIRDEIRRMG 276
AD R +D ++I+ + G
Sbjct: 415 VADGLDYFYRMQDDHRIKPSVPHFG 439
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI-STRYDL 74
+ ER +++ + + ++E E + ++ C + +A+S + +HS+I S +
Sbjct: 38 FGERESLHKSIQLLE----SRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSN 93
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
S + N +I MY KCG + A ++F + +++ +W+ ++ + NGC +AL F
Sbjct: 94 SQPPFLANLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRR 153
Query: 135 MIINGVFPDDVTF--IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192
M +G PD VTF I A +DQG + + + + ++P V+ MYG+
Sbjct: 154 MYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHR-YARISGLLPNVVVGTAVISMYGK 212
Query: 193 AGLLEEAEAFIREMPIEAEWS---VWGALLNACRIH-RNDEMFDPIRQ 236
G L++A A E+ +W W A++ ++ R+ E + R+
Sbjct: 213 CGRLDDARAAFEEL----QWKNSVTWNAMMTNYKLDGRDREALELFRE 256
>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 181/292 (61%), Gaps = 9/292 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++ VSW T+I GY E CE+ + VF + + + PN++T +VL AC+SI++L
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDK 466
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G VH I +YD+ VG A+ +MY KCGD+G + QVF + K+ ISW+ +I
Sbjct: 467 GMNVHGKIIKLGIQYDI----FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522
Query: 118 GLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
GLA +G ++L LF M + V P+++ ++++ ACSH GLVD+GL F +M VY I
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P+ +HY CVVD+ R+G L EAE FIR +P + E + W ALL+ C+ ++++++ + +
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+L + + L+SN +A A RW D + IR +R GLKK GCSW+EV
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEV 694
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ +SW+ MI Y++ G+ EEA+ +F +M + + +PN + LSA +S+ ALS
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ T+ + +G+++I++Y KCG VF+++ K+++ W++++ G +
Sbjct: 335 GINIHGHV-TKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYS 393
Query: 121 MNG--------------------------------CGRQALQLFSLMIINGVFPDDVTFI 148
+NG C + L++F+ ++++G P+ TF
Sbjct: 394 INGRLEETEELFELIPEKNDVSWGTIIAGYLENEQC-EKVLEVFNTLLVSGQTPNKSTFS 452
Query: 149 ALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++ AC+ +D+G+ + + + Y+I T + DMY + G + ++
Sbjct: 453 SVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFER 508
Query: 206 MPIEAE--WSV 214
MP + E W+V
Sbjct: 509 MPEKNEISWTV 519
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSWT I G+ G EA+ +F + ++ PN+ T +V+ AC + G
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFGLG 203
Query: 62 QYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ + + LSVS N++I + ++ G++ +A +VF+ + +D++SW+ ++
Sbjct: 204 MSILGLVVKAGFEHYLSVS----NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDA 259
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE-IV 177
G R+A ++F M +++++ A+I+ S G ++ L LF M V E
Sbjct: 260 YVETGDLREARRIFDEMPER----NEISWSAMIARYSQSGYAEEALKLFSKM--VQEGFK 313
Query: 178 PQTQHYACVV 187
P +AC +
Sbjct: 314 PNISCFACTL 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
+A+I+ +K G V ++ F +++++SW+ ISG NG +AL+LF ++ +GV
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACV----VDMYGRAGLL 196
P+DVTF +++ AC G L D GL MS + +V +HY V + + R G +
Sbjct: 182 PNDVTFTSVVRAC--GELGDFGL----GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEI 235
Query: 197 EEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD--PIRQELVNKKGVSVGTFA 250
+ A M + + W A+L+A + +FD P R E+ +++
Sbjct: 236 DLARRVFDRME-KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI---------SWS 285
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283
M ++ + E+A K+ ++ + G K C
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 175/293 (59%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+++W T+I C + + M +T+ P+ AT++++L CS ++A
Sbjct: 477 MKARDIITWNTIIASCVHSEDCNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKRQ 535
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + L VGN +I MY KCG + + QVF ++ KD+++W+ +IS
Sbjct: 536 GKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 594
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A++ F M G+ PD V F+A+I ACSH GLV++GL F M Y+I P+
Sbjct: 595 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 654
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ R+ LL++AE FI MP++ + S+WGALL+ACR+ + E+ + + + ++
Sbjct: 655 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 714
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A +W+ IR I+ GLKK GCSW+E+ ++
Sbjct: 715 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 767
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 15/232 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW TMI GY++ G EE++ +F EM + +P+ T+ ++L AC + L F
Sbjct: 277 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEM--VNQFKPDLLTITSILQACGHLGDLEF 334
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+YVH Y I++ Y+ + N +INMY KCG++ + +VF+ + KD +SW+++I+
Sbjct: 335 GKYVHDYMITSGYECDTT--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 392
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEI 176
NG +A++LF +M + V PD VT++ L+S + G + G L M I
Sbjct: 393 IQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNI 451
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
V +VDMY + G + ++ M + W ++ +C +H D
Sbjct: 452 VVSNT----LVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VHSED 497
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW ++I GY G+ EA+ ++ + P+ T+ +VL AC + ++
Sbjct: 176 MPLRDVVSWNSLISGYNANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEE 234
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H I + + +V N +++MY K + ++F+ + +D +SW+T+I G +
Sbjct: 235 GDIIHGLIE-KIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQ 179
G ++++LF + ++N PD +T +++ AC H G ++ G + M T YE
Sbjct: 294 QVGLYEESIKLF-MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC--D 350
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
T +++MY + G L ++ M + S W +++N
Sbjct: 351 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMIN 390
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW +MI Y + G +EA+ +F+ M+ + +P+ T V +LS + + L
Sbjct: 377 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLSMSTQLGDLHL 434
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + + + +V N +++MY KCG++G +++VF + +D+I+W+T+I+
Sbjct: 435 GKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 493
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
+ L++ S M GV PD T ++++ CS QG +FK +
Sbjct: 494 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL--GLESD 551
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
VP +++MY + G L + + M + + W AL++AC ++
Sbjct: 552 VPVGN---VLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 596
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 91/167 (54%), Gaps = 6/167 (3%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W ++I G EA+S++ E ++ + +P+ T +V++AC+ +
Sbjct: 76 PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGLLDFEMA 134
Query: 62 QYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H + D+ + +GNA+I+MY + D+ A +VF + +D++SW+++ISG
Sbjct: 135 KSIHDRV---LDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGY 191
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
NG +AL+++ GV PD T +++ AC G V++G I+
Sbjct: 192 NANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 238
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 39 EPNEATLVNVLS-ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97
E + TL + +S A +S + + +HS I T L S + +I Y D +
Sbjct: 9 ECSRQTLFSSISRALASAATTTQLHKLHSLIIT-LGLHHSVIFSAKLIAKYAHFRDPTSS 67
Query: 98 IQVFNMLAYKDMIS-WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
VF + + + + W+++I L NG +AL L+S + PD TF ++I+AC+
Sbjct: 68 FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA- 126
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYA------CVVDMYGRAGLLEEAEAFIREMPIEA 210
GL+ F+ ++++ V + ++DMY R L++A EMP+
Sbjct: 127 ------GLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD 180
Query: 211 EWSVWGALLNA 221
S W +L++
Sbjct: 181 VVS-WNSLISG 190
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 175/292 (59%), Gaps = 5/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
MPKRDVVSW T+I GY G EA+ +F++M + PN T+ VL+AC+ L
Sbjct: 215 MPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCL 274
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G +VH+YI R ++ + ++I+MY KCG + A+QVF K D+ SW+TVI
Sbjct: 275 ETGIWVHAYID-RNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVIC 333
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLAM+G AL++F +M NG+ PDDVT + +++AC+HGGLVD+GL F ++ Y I
Sbjct: 334 GLAMHGKAADALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFYSLEK-YAIT 392
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY CV+D+ GR G L+EA + IR M ++ +WGA LNAC++H N E+ + E
Sbjct: 393 PKIEHYGCVIDLLGRVGRLQEAYSIIRTMRMKPNAVIWGAFLNACKVHSNVELGEIAAAE 452
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L ++S+ +A A W + R E+ + +KK GCS IE++
Sbjct: 453 LTRLDPDDPWAKVMLSSLYAKAQDWSSLARERREMNSLQMKKTPGCSSIELD 504
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 88/172 (51%), Gaps = 7/172 (4%)
Query: 60 FGQYVHSYISTR-YD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
+G+Y +S R +D + V + V NA+++ Y++ +VG A ++F + +D++SW+T+I
Sbjct: 168 YGEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTII 227
Query: 117 SGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
+G + G +AL+LF M+ V P+ T +++AC+ G ++ G I A
Sbjct: 228 AGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETG-IWVHAYIDR 286
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G +E+A + P + + W ++ +H
Sbjct: 287 NRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMH 338
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 78/192 (40%), Gaps = 10/192 (5%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML 104
L+ LS + A +H + L + + A+++ Y G A +F+ +
Sbjct: 14 LIKSLSPAAGPRAHLAAAAIHGLLFKEGLLHAGSHLPTALLSAYAALGRPRHARDLFDEM 73
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
+++ + + A +G QAL +F M+ +GV PD+V ++AC G L
Sbjct: 74 PDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVLPDNVALAVALAACHGTGSFPAAL 133
Query: 165 ---------ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+ A+ IVP ++ +YG G L + MP+++ S W
Sbjct: 134 GMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLVSRRLFDAMPVKSTVS-W 192
Query: 216 GALLNACRIHRN 227
A+++ H N
Sbjct: 193 NAMVHQYIRHSN 204
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 185/286 (64%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D ++W ++ G+A+ G EEA+ VF M+++ + N T V+ LSA ++++ + G+
Sbjct: 510 KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + + S VGNA+I++Y KCG A F+ ++ ++ +SW+T+I+ + +G
Sbjct: 569 IHARV-IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL LF M G+ P+DVTFI +++ACSH GLV++GL FK+MS Y I P+ HY
Sbjct: 628 RGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHY 687
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
ACV+D++GRAG L+ A+ FI EMPI A+ VW LL+AC++H+N E+ + + L+ +
Sbjct: 688 ACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEP 747
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ L+SN +A ++W + +++R +R G++K+ G SWIEV
Sbjct: 748 HDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 145/261 (55%), Gaps = 13/261 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSWT+MI GY + C++A++ F+EM+K P+ L + +S C+ I+A+
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQ 464
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H+ I + Y VS + NA++N+Y +CG + A F + +KD I+W+ ++SG
Sbjct: 465 GLQIHARIYVSGYSGDVS--IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGF 522
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
A +G +AL++F M +GV + TF++ +SA ++ + QG I + + T +
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-- 580
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
+T+ ++ +YG+ G E+A+ EM E S W ++ +C H ++FD +
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQM 639
Query: 235 RQELVNKKGVS-VGTFALMSN 254
++E + V+ +G A S+
Sbjct: 640 KKEGIKPNDVTFIGVLAACSH 660
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 11/203 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD VSW M+ GYA+ G EEA+ ++++M + P L +VLS+C+ +
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ VGNAVI +Y++CG +A +VF + ++D ++++T+ISG A
Sbjct: 162 GRLIHAQ-GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHA 220
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
G G AL++F M +G+ PD VT +L++AC+ G + +G LFKA + I
Sbjct: 221 QCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280
Query: 177 VPQTQHYACVVDMYGRAGLLEEA 199
+ + ++D+Y + G +E A
Sbjct: 281 MEGS-----LLDLYVKCGDVETA 298
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD V++ T+I G+A+ G E A+ +F+EM+ + P+ T+ ++L+AC+S+ L
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY+ + +S ++ +++++YVKCGDV A+ +FN +++ W+ ++
Sbjct: 263 GTQLHSYL-FKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ +LF M G+ P+ T+ ++ C+ +D G + ++S
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLSVKTGFESDM 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G LE+A + EM E + W +++
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMI 418
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 4/219 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ +VV W M+ + + ++ +F +M+ PN+ T +L C+ + G+
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGE 365
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS +S + V +I+MY K G + A +V ML KD++SW+++I+G +
Sbjct: 366 QIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
C + AL F M G++PD++ + IS C+ + QGL + A V
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HARIYVSGYSGDVSI 483
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +V++Y R G + EA + E+ + E + W L++
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEIT-WNGLVSG 521
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ TR L +VGN +I++Y K G V A +VF L+ +D +SW ++SG A NG
Sbjct: 64 IHAKAVTR-GLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL L+ M GV P +++S+C+ L QG L A + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR-LIHAQGYKHGFCSEIFVG 181
Query: 184 ACVVDMYGRAGLLEEAEAFIREMP 207
V+ +Y R G AE +MP
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMP 205
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 188/289 (65%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R +++W +MI GY + G EAV VF +M ++ EP+ AT V+VLSACS + +L
Sbjct: 169 MPQRSIIAWNSMISGYEQNGLASEAVEVFNKMRESG-GEPDSATFVSVLSACSQLGSLDL 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H I + ++ ++ +++NM+ +CGDVG A VF+ + +++SW+ +ISG
Sbjct: 228 GCWLHECI-VGTGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYG 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+++F M GV P+ VT++A++SAC+H GL+++G ++F +M Y +VP
Sbjct: 287 MHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGV 346
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VDM+GR GLL EA F+R + E +VW A+L AC++H+N ++ + + L+
Sbjct: 347 EHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLI 406
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + G + L+SN +A A R + +R+ + + GLKK+ G S I+V
Sbjct: 407 SAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDV 455
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 10/224 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + ++I + GF +AV ++ M ++ P+ T +V+ AC+ +S L G V
Sbjct: 72 DSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIV-PSTYTFTSVIKACADLSLLRLGTIV 130
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS++ + ++ V A++ Y K +A +VF+ + + +I+W+++ISG NG
Sbjct: 131 HSHVFVS-GYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGL 189
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEIVPQTQ 181
+A+++F+ M +G PD TF++++SACS G +D G L + + +V T
Sbjct: 190 ASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATS 249
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V+M+ R G + A A M E W A+++ +H
Sbjct: 250 ----LVNMFSRCGDVGRARAVFDSMN-EGNVVSWTAMISGYGMH 288
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++GF EEA+ F+EM+ + P+ ++ L+AC+++ ALSF
Sbjct: 157 MPERDLISWTAMINGFVKKGFHEEALVWFREMQISG-VRPDYVAIIAALNACTNLGALSF 215
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ + D + V N++I++Y +CG V A +VF+ + + ++SW++VI G A
Sbjct: 216 GLWVHRYVMNQ-DFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFA 274
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M Y I P+
Sbjct: 275 ANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRI 334
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A I MP++ V G+LL ACR H N+ + + + + L
Sbjct: 335 EHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLS 394
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+++R +++ +GLKK+ G S IE++
Sbjct: 395 DLNVKSHSNYVILSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEID 444
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 35/234 (14%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
VSWT+ I G EA F +M + EPN T + +LS C + S
Sbjct: 27 TVSWTSRITLLTRNGRLAEAAKXFSDM-RLSGVEPNHITFIALLSGCGDFPSGSETLSNL 85
Query: 64 VHSY--------------------ISTR-----------YDLSVSNLVGNAVINMYVKCG 92
+H Y S R Y ++++ N +I+ Y++ G
Sbjct: 86 LHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSG 145
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
V A+++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA ++
Sbjct: 146 QVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALN 205
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
AC++ G + GL + + + + + ++D+Y R G +E A +M
Sbjct: 206 ACTNLGALSFGLWVHRYVMN-QDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKM 258
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 44/162 (27%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-- 155
IQ N + +SW++ I+ L NG +A + FS M ++GV P+ +TFIAL+S C
Sbjct: 16 IQRLNQSTSETTVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDF 75
Query: 156 -----------HG-------------------------GLVDQGLILFKAMSTVYEIVPQ 179
HG G V + ++F M + +
Sbjct: 76 PSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWN 135
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
T ++D Y R+G ++ A +MP E + W A++N
Sbjct: 136 T-----MIDGYMRSGQVDNAVKMFDKMP-ERDLISWTAMING 171
>gi|115440727|ref|NP_001044643.1| Os01g0819800 [Oryza sativa Japonica Group]
gi|21104789|dbj|BAB93376.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534174|dbj|BAF06557.1| Os01g0819800 [Oryza sativa Japonica Group]
Length = 646
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 175/292 (59%), Gaps = 5/292 (1%)
Query: 1 MPK--RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSIS 56
MP+ RD+VSW +I +A+ G EAV +++ M + EP+ TLV VLS+C+
Sbjct: 226 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTG 285
Query: 57 ALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A G V Y+ NL + NA+IN + +CG + A ++F+ + + ++SW+T+
Sbjct: 286 ARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTL 345
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G M+G G A+ LF M+ PD V + L+SACSH G+ D+G F M Y
Sbjct: 346 IIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC 405
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P+ +HY C+VD+ GRAG L+EA I MP+ A+ +VWGALL AC+IH+N EM +
Sbjct: 406 LRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAF 465
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +V+ + +VG + LM+N +A A + + K+R +RR GL+K+ GCS++E
Sbjct: 466 ERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVE 517
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 177/290 (61%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V WT+MI GY + G +EA+ +F++M+ + ++AT+ V+S+C + AL
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQ-IAGVKVDDATISTVVSSCGQMGALDL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+YVH+Y + L V N++I+MY KCGD+ A +F + +D SW+ +I G A
Sbjct: 316 GRYVHAYCDI-HGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFA 374
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL LF+ M GV P+++TF+ ++++CSHGGLV+QG F MS++Y I P+
Sbjct: 375 ANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPR 434
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI+EMPI + +W +LL ACR + + + + +
Sbjct: 435 IEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQ 494
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+S +A RW DANK+R I K+ GCS+IEV+
Sbjct: 495 VLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 544
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 106/195 (54%), Gaps = 3/195 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW T+I GY G +A+ F +M K + ++ TL+N L AC+ + G+
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAK-GQVMLDDVTLLNALVACARTCMMKVGKLC 218
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + T ++ +G+++I+MY KCG V A ++F+ + ++ + W+++ISG G
Sbjct: 219 HALLVTN-GFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQ 277
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A++LF M I GV DD T ++S+C G +D G + A ++ +
Sbjct: 278 SKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYV-HAYCDIHGLGKDISVKN 336
Query: 185 CVVDMYGRAGLLEEA 199
++DMY + G +++A
Sbjct: 337 SLIDMYSKCGDIKKA 351
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+L LS + + ++ G +H+ +S + LS V N +INMY C A V +
Sbjct: 95 SLSAALSTAARMPSVVVGAQLHA-LSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDS 153
Query: 104 L--AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
D +SW+T+I+G G +ALQ FS M V DDVT + + AC+ ++
Sbjct: 154 APKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMK 213
Query: 162 QGLILFKAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
G + + T +EI + ++ MY + G +E+A MP
Sbjct: 214 VGKLCHALLVTNGFEI--NCYMGSSLISMYAKCGQVEDARRIFDGMP 258
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 181/299 (60%), Gaps = 16/299 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE----------------AEPNEATLVNV 48
+VVSW+ +I +A+RG E + VF+EM+ + +PN T+
Sbjct: 113 NVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCA 172
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L AC+ ++AL G+ +H+YI + S V N +I+MY K GD+ +A VF+ L K+
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
+SW+++++G M+G G++AL++F M G+ PD VT + ++ ACSH G++DQG+ F
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFN 292
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
+MS + ++P +HYAC+VD+ GRAG L EA I M +E VW ALL+ CRIH N
Sbjct: 293 SMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANV 352
Query: 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
E+ + ++L+ + G++ L+SN +A A RW+D ++R ++ G++K+ GCSW++
Sbjct: 353 ELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQ 411
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 78/134 (58%), Gaps = 1/134 (0%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
+ P+ +LVNVL AC+S+ A G+ VH I+ R VGNA+++MY KCG V
Sbjct: 8 DMRPDVVSLVNVLPACASMGAWLHGKAVHG-IAVRSGSFEDLFVGNALVDMYAKCGMVDE 66
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A +VF+ + KD++SW+ +++G + G AL LF M + + V++ A+I+A +
Sbjct: 67 ASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ 126
Query: 157 GGLVDQGLILFKAM 170
GL + L +F+ M
Sbjct: 127 RGLGCETLDVFREM 140
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +++ VSWT+++ GY G +EA+ VF EM + +P+ TL+ VL ACS +
Sbjct: 228 LKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVG-LQPDGVTLLVVLYACSHSGMIDQ 286
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISG 118
G + +S + + ++++ + G + A+++ M I W ++SG
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/294 (39%), Positives = 179/294 (60%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+TMI G+A GF EA F+E+++ PNE +L LSAC+ A+ F
Sbjct: 229 MPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVG-MRPNEVSLTGALSACADAGAIEF 287
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ +H +I L + + V NA+++ Y KCG+VG+A VF + K ++SW+++I+GL
Sbjct: 288 GKILHGFIEKSGFLWMVS-VNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGL 346
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +A+QLF M +G+ PD + FI+++ ACSH GL+++G F M +Y I P
Sbjct: 347 AMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPA 406
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+YGRAG L++A FI MP+ +W LL AC IH N ++ + +++ L
Sbjct: 407 IEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLS 466
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D +R + + K G S IEV+ ++
Sbjct: 467 ELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMY 520
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 21/243 (8%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT++ Y+E GF A VF+EM EPN V++AC + + + +
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEM-----FEPNVVAWNAVVTACFRCGDVKGADMMFNRMP 199
Query: 70 TRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R NL N ++ Y K G++ +A ++F + KD +SWST+I G A NG +A
Sbjct: 200 FR------NLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEA 253
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHYACV 186
F + G+ P++V+ +SAC+ G ++ G IL F S +V +
Sbjct: 254 FGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNN---AL 310
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKK 242
+D Y + G + A MP + W +++ +H E +F + + +
Sbjct: 311 LDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPD 370
Query: 243 GVS 245
G++
Sbjct: 371 GIA 373
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 10/205 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DV T+I G AE + ++ F EM + A + + +L A +S +L G
Sbjct: 66 PNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESG 125
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + + L VG +++MY +CG V A +VF + ++++W+ V++
Sbjct: 126 IQLHCQ-AIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G + A +F+ M F + ++ +++ + G ++ LF M V
Sbjct: 185 CGDVKGADMMFNRM----PFRNLTSWNVMLAGYTKAGELELARKLFLEMP-----VKDDV 235
Query: 182 HYACVVDMYGRAGLLEEAEAFIREM 206
++ ++ + G EA F RE+
Sbjct: 236 SWSTMIVGFAHNGFFYEAFGFFREL 260
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 180/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D +SW ++I G + G + + F+ M K + +P + +V+ AC+ ++ALS
Sbjct: 288 LPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLK-ENVKPMAVSFSSVIPACAHLTALSL 346
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R + + +++++MY KCG++ +A VF+ + +DM++W+ +I G A
Sbjct: 347 GRQLHGCI-VRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCA 405
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G A+ LF M+ +GV P V F+A+++ACSH GLVD+G F +M + I P
Sbjct: 406 MHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGL 465
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYA V D+ GRAG LEEA FI M ++ SVW LL ACR H++ E+ + + +L+
Sbjct: 466 EHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLL 525
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++G + LMSN ++ A RW+DA ++R +R+ GLKK CSWIEV +
Sbjct: 526 SVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQV 578
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 11/229 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW T+I G+A+ G EA+ + +EM K + +P+ TL ++L + ++
Sbjct: 186 MPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNK 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y + R +G+++I+MY KC + +++ F +L KD ISW+++I+G
Sbjct: 246 GKEIHGY-AVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCV 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV----YEI 176
NG + L F M+ V P V+F ++I AC+H + G L + + E
Sbjct: 305 QNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEF 364
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + +VDMY + G ++ A ++ + + + W A++ C +H
Sbjct: 365 IASS-----LVDMYAKCGNIKMAR-YVFDRIDKRDMVAWTAIIMGCAMH 407
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
+W+++I Y + S F M ++ PN ++L A + + +H+
Sbjct: 77 AWSSIIKCYTSHSLLHLSFSSFNSM-RSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHA- 134
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAI---------------QVFNMLAYKDMISW 112
+ R L + NA+IN Y K + G +VF+M+ +D++SW
Sbjct: 135 CTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSW 194
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIALI 151
+TVI+G A NG +AL + M NG PD T +++
Sbjct: 195 NTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSIL 234
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 185/286 (64%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D ++W ++ G+A+ G EEA+ VF M+++ + N T V+ LSA ++++ + G+
Sbjct: 510 KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQ 568
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + + S VGNA+I++Y KCG A F+ ++ ++ +SW+T+I+ + +G
Sbjct: 569 IHARV-IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHG 627
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL LF M G+ P+DVTFI +++ACSH GLV++GL FK+MS Y I P+ HY
Sbjct: 628 RGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHY 687
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
ACV+D++GRAG L+ A+ FI EMPI A+ VW LL+AC++H+N E+ + + L+ +
Sbjct: 688 ACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEP 747
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++ L+SN +A ++W + +++R +R G++K+ G SWIEV
Sbjct: 748 HDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 145/261 (55%), Gaps = 13/261 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSWT+MI GY + C++A++ F+EM+K P+ L + +S C+ I+A+
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQ 464
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H+ I + Y VS + NA++N+Y +CG + A F + +KD I+W+ ++SG
Sbjct: 465 GLQIHARIYVSGYSGDVS--IWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGF 522
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
A +G +AL++F M +GV + TF++ +SA ++ + QG I + + T +
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-- 580
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
+T+ ++ +YG+ G E+A+ EM E S W ++ +C H ++FD +
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQM 639
Query: 235 RQELVNKKGVS-VGTFALMSN 254
++E + V+ +G A S+
Sbjct: 640 KKEGIKPNDVTFIGVLAACSH 660
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 11/203 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD VSW M+ GYA+ G EEA+ ++++M + P L +VLS+C+ +
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ VGNAVI +Y++CG +A +VF + ++D ++++T+ISG A
Sbjct: 162 GRLIHAQ-GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHA 220
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
G G AL++F M +G+ PD VT +L++AC+ G + +G LFKA + I
Sbjct: 221 QCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280
Query: 177 VPQTQHYACVVDMYGRAGLLEEA 199
+ + ++D+Y + G +E A
Sbjct: 281 MEGS-----LLDLYVKCGDVETA 298
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD V++ T+I G+A+ G E A+ +F+EM+ + P+ T+ ++L+AC+S+ L
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY+ + +S ++ +++++YVKCGDV A+ +FN +++ W+ ++
Sbjct: 263 GTQLHSYL-FKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ +LF M G+ P+ T+ ++ C+ +D G + ++S
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLSVKTGFESDM 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G LE+A + EM E + W +++
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMI 418
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 4/219 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ +VV W M+ + + ++ +F +M+ PN+ T +L C+ + G+
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGE 365
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS +S + V +I+MY K G + A +V ML KD++SW+++I+G +
Sbjct: 366 QIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
C + AL F M G++PD++ + IS C+ + QGL + A V
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HARIYVSGYSGDVSI 483
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +V++Y R G + EA + E+ + E + W L++
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEIEHKDEIT-WNGLVSG 521
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ TR L +VGN +I++Y K G V A +VF L+ +D +SW ++SG A NG
Sbjct: 64 IHAKAVTR-GLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL L+ M GV P +++S+C+ L QG L A + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR-LIHAQGYKHGFCSEIFVG 181
Query: 184 ACVVDMYGRAGLLEEAEAFIREMP 207
V+ +Y R G AE +MP
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMP 205
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 184/294 (62%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+TMI G+A G+ EEA S F+E+++ K PNE +L VLSAC+ AL F
Sbjct: 229 MPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQR-KGMRPNETSLTGVLSACAQAGALEF 287
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G+ +H +I + L+ V NA+++ Y KCG+V +A VF ++ ++++SW+++++ L
Sbjct: 288 GKILHGFIE-KSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAAL 346
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G G +A+ +F M +G+ PD++ FI+L+ ACSH GLV+QG F M +Y I P
Sbjct: 347 AMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPS 406
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+YGRAG L++A F+ +MPI +W LL AC +H + ++ + +++ L
Sbjct: 407 IEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLS 466
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ L+SN +A A +W+DA +R + + K G S IEV+ ++
Sbjct: 467 ELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMY 520
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+I Y E GF A VF EM EPN +++AC + G+ +
Sbjct: 145 TTLISMYGECGFVGFARKVFDEM-----PEPNAIAWNAMVTACCRGGDMKGGREL----- 194
Query: 70 TRYDL-SVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+DL V NL+ N ++ Y K G++ +A ++F + KD +SWST+I G A NG +
Sbjct: 195 --FDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEE 252
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHYAC 185
A F + G+ P++ + ++SAC+ G ++ G IL F S + IV
Sbjct: 253 AFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNN---A 309
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
++D Y + G + A+ + E W +++ A +H + E
Sbjct: 310 LLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGE 353
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DV T+I G E ++++ F EM + + P+ + ++ A +++ ++ G
Sbjct: 66 PNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVG 125
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + + L VG +I+MY +CG VG A +VF+ + + I+W+ +++
Sbjct: 126 IQLHCQ-ALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCR 184
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G + +LF LM + + +V +++ + G ++ +F M ++
Sbjct: 185 GGDMKGGRELFDLMPVRNLMSWNV----MLAGYTKAGELELAREMFLEMPMKDDV----- 235
Query: 182 HYACVVDMYGRAGLLEEAEAFIREM 206
++ ++ + G EEA +F RE+
Sbjct: 236 SWSTMIVGFAHNGYFEEAFSFFREL 260
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 174/293 (59%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK +VVSW MI GY + G EA+ +F +M K +P+ T +VL ACS ++ L
Sbjct: 561 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEK 619
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++I L ++ +V A+++MY KCG V A+ +FN L +D +SW+++I+
Sbjct: 620 GKEIHNFI-IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 678
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL+LF M + PD VTF+A++SACSH GLVD+G F M Y P
Sbjct: 679 SHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAV 738
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++D+ GR G L EA ++ P I + + L +AC +H+ ++ + I + L+
Sbjct: 739 EHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLI 798
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K T+ ++SN +A +W++ K+R +I+ +GLKK GCSWIEV I
Sbjct: 799 EKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRI 851
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 127/227 (55%), Gaps = 12/227 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++VVSW +MI GY+ +G + + +F+ M++ + P TL ++L ACS L G+
Sbjct: 462 RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGK 520
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H YI R + V +++I++Y KCG++G A VF + +++SW+ +ISG
Sbjct: 521 FIHGYI-IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKV 579
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVP 178
G +AL +F+ M GV PD +TF +++ ACS ++++G + ++ + E+V
Sbjct: 580 GSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV- 638
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G ++EA ++P E ++ W +++ A H
Sbjct: 639 ----MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSH 680
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 115/213 (53%), Gaps = 15/213 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW +I Y + G E+A+ +F+EM K +P+ TL V+S+C+ + L
Sbjct: 359 MPERDVASWNNVISCYYQDGQPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLER 417
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R ++ V +A+++MY KCG + +A +VF + K+++SW+++I+G +
Sbjct: 418 GKEIHMEL-VRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 476
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH------GGLVDQGLILFKAMSTVY 174
+ G + ++LF M G+ P T +++ ACS G + +I + + ++
Sbjct: 477 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIF 536
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++D+Y + G + AE + MP
Sbjct: 537 V-------NSSLIDLYFKCGNIGSAENVFQNMP 562
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W ++ + E + VF + +P+ T +VL ACS + + +G+ V
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+++ + ++ +V ++ + MY KC AI++F+ + +D+ SW+ VIS +G
Sbjct: 321 HTHV-IKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 379
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTV 173
+AL+LF M ++G PD VT +IS+C+ H LV G L +S+
Sbjct: 380 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA 439
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+VDMYG+ G LE A+ ++
Sbjct: 440 ------------LVDMYGKCGCLEMAKEVFEQI 460
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 113/284 (39%), Positives = 183/284 (64%), Gaps = 2/284 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD SW++MI YA+ +EA+ +++EM + P+ ++V+VLSACS++ AL+ G
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREM-RVAGVAPDCISMVSVLSACSAMGALAIGAE 234
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH ++ + + V +G A+++MY KCGD+ +++VF+ + KD+++WS++I GLA +G
Sbjct: 235 VHRFVESNR-VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHG 293
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G AL LFS MI G+ P+++TFI ++ AC+H GLV+ G F +MS V+ +VP+ +HY
Sbjct: 294 LGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHY 353
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAG +EEA IR M + + +W LL ACRIH+N E+ + +L
Sbjct: 354 GCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDP 413
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
++ G + L+SN +A A+ WE ++R IRR +++ G S IE
Sbjct: 414 LADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIE 457
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 44/209 (21%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+RDV M+ Y RG EA VF M
Sbjct: 112 PRRDVFLCNVMLAAYVARGEVAEARKVFDGM----------------------------- 142
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
S +LV N +I+ Y GDVG+A ++F+ +D SWS++IS A
Sbjct: 143 -------------SGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYA 189
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
C ++AL+L+ M + GV PD ++ ++++SACS G + G + + + + +
Sbjct: 190 KGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVES-NRVEVDM 248
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ +VDMY + G +E + MP++
Sbjct: 249 KLGTALVDMYAKCGDIENSLKVFHAMPVK 277
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV++W++MI G A G +A+S+F EM ++ +PNE T + VL AC+ + ++
Sbjct: 274 MPVKDVLTWSSMIIGLANHGLGHDALSLFSEM-ISQGLQPNEITFIGVLIACTHVGLVND 332
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVI 116
G+ S +S + + ++++ + G V A+++ + +K D I W T++
Sbjct: 333 GKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLL 389
>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 193/298 (64%), Gaps = 8/298 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +V+W +++ G+ + G +EA+ VF +M ++ EP+ AT V++LSAC+ A+S
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG-FEPDSATFVSLLSACAQTGAVSL 226
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +VH YI S DL+V +G A+IN+Y +CGDVG A +VF+ + ++ +W+ +IS
Sbjct: 227 GSWVHQYIISEGLDLNVK--LGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAY 284
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G G+QA++LF+ M + G P++VTF+A++SAC+H GLV++G ++K M+ Y ++P
Sbjct: 285 GTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIP 344
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDPIR 235
+H+ C+VDM GRAG L+EA FI ++ + + +W A+L AC++HRN ++ I
Sbjct: 345 GVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIA 404
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ L+ + + G ++SN +A + + ++ + IRD + R L+K+ G S IEV +
Sbjct: 405 KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTY 462
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +V+ +C+ +SAL G+ VH + + + V A++ Y KCGD+ A Q
Sbjct: 105 PSNYTFTSVIKSCADLSALRIGKGVHCH-AVVSGFGLDTYVQAALVTFYSKCGDMEGARQ 163
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG- 158
VF+ + K +++W++++SG NG +A+Q+F M +G PD TF++L+SAC+ G
Sbjct: 164 VFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGA 223
Query: 159 ----------LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
++ +GL L + T ++++Y R G + +A +M
Sbjct: 224 VSLGSWVHQYIISEGLDLNVKLGTA------------LINLYSRCGDVGKAREVFDKMK- 270
Query: 209 EAEWSVWGALLNACRIH 225
E + W A+++A H
Sbjct: 271 ETNVAAWTAMISAYGTH 287
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 183/292 (62%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W+ MI GY G EA+ +F EM + EATLV+VL+AC+ I L
Sbjct: 206 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEM-LSAGTTVGEATLVSVLTACAQIGTLDR 264
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ +R + +S +G A+++MY KCG V A++VF +A +++ +W++ +SGLA
Sbjct: 265 GKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLA 323
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + LQLF M G+ P+ V+F+A++ CS GLVD+G F +M Y + P
Sbjct: 324 MNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWP 382
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A +FI +MP+E VWGALLNA RIH + ++ +L+
Sbjct: 383 EHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLA 442
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + +SN +A + W+ +++R ++ G+KK G S IEV+ +
Sbjct: 443 IESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKV 494
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
A++ GDV A +F+ + +D ++WS +I+G G R+AL LF M+ G
Sbjct: 184 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 243
Query: 142 PDDVTFIALISACSHGGLVDQG 163
+ T +++++AC+ G +D+G
Sbjct: 244 VGEATLVSVLTACAQIGTLDRG 265
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 182/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SWTTMI Y++ EA+ VF EM K P+E T+ V+SAC+ + AL
Sbjct: 203 MPARDIISWTTMINCYSQNKRFREALGVFNEMAK-HGISPDEVTMATVISACAHLGALDL 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI ++ ++ +G+A+I+MY KCG + ++ +F L K++ W++VI GLA
Sbjct: 262 GKEIHYYI-MQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL +F M + P+ VTF++++SAC+H GL+++G F +M+ + I P
Sbjct: 321 VHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGV 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ +AGLLEEA IR M +E +WGALL+ C++HRN E+ +L+
Sbjct: 381 EHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMV 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVNPSI 292
+ + G + L+ N A +RW +A KIR ++ G++K+ G SWIE+ +
Sbjct: 441 LEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQV 493
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 49/250 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WTTM+ G G A +F M + N AT
Sbjct: 141 MPERDVFAWTTMVSGLVRVGDMSSAGRLFDMM-----PDRNLATW--------------- 180
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +I+ Y + +V +A +FN + +D+ISW+T+I+ +
Sbjct: 181 ---------------------NTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYS 219
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
N R+AL +F+ M +G+ PD+VT +ISAC+H G +D G I + M + +
Sbjct: 220 QNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNL--D 277
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIR 235
+ ++DMY + G L+ + ++ E W +++ +H E MFD +
Sbjct: 278 VYIGSALIDMYAKCGSLDRSLLMFFKLR-EKNLFCWNSVIEGLAVHGYAEEALAMFDKME 336
Query: 236 QELVNKKGVS 245
+E + GV+
Sbjct: 337 REKIKPNGVT 346
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 17/205 (8%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V + MI G+ + +A+ ++ +M + P T +++ AC +S L F + V
Sbjct: 44 NVFVYNAMIKGFVQSYQPVQALELYVQMLRAN-VSPTSYTFPSLIKACGLVSQLRFAEAV 102
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H ++ +D V V ++++ Y G + +++VF+ + +D+ +W+T++SGL G
Sbjct: 103 HGHVWRNGFDSHV--FVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVG 160
Query: 124 CGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
A +LF +M PD T+ LI + VD +LF M +I+ T
Sbjct: 161 DMSSAGRLFDMM------PDRNLATWNTLIDGYARLREVDVAELLFNQMPA-RDIISWTT 213
Query: 182 HYACVVDMYGRAGLLEEAEAFIREM 206
C Y + EA EM
Sbjct: 214 MINC----YSQNKRFREALGVFNEM 234
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 13/117 (11%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A+ + + ++ ++ +I G + QAL+L+ M+ V P TF +LI AC
Sbjct: 33 AVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKAC-- 90
Query: 157 GGLVDQGLILFKAMSTVY------EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
GLV Q V+ + QT +VD Y G +EE+ EMP
Sbjct: 91 -GLVSQLRFAEAVHGHVWRNGFDSHVFVQTS----LVDFYSSMGRIEESVRVFDEMP 142
>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 177/289 (61%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VSWT+MI G EA+ +F +++T +P+ +++ LSA +++S+L G+
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTN-IQPDSIAIISALSATANLSSLKKGKE 571
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ R + + +++++MY CG V + ++F+ + +D+I W+++I+ M+G
Sbjct: 572 IHGFL-IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHG 630
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CG +A+ LF M V PD +TF+AL+ ACSH GL+ +G F+ M Y++ P +HY
Sbjct: 631 CGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHY 690
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R+ LEEA F+R MPI+ VW ALL AC IH N E+ + +EL+
Sbjct: 691 ACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDT 750
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G +AL+SN FA RW D ++R ++ GLKK GCSWIEV+ I
Sbjct: 751 KNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKI 799
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 125/236 (52%), Gaps = 27/236 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D++SWTT+I GYA+ EA+++F++++ K + + + +VL ACS + + +F
Sbjct: 410 MHEKDLISWTTIIAGYAQNECHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACSGLKSRNF 468
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y+ R DL+ ++ NA++N+Y + G A + F + KD++SW+++I+
Sbjct: 469 IREIHGYVFKR-DLA-DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCV 526
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
NG +AL+LF + + PD + I+ +SA + HG L+ +G L
Sbjct: 527 HNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGP 586
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+++ +VDMY G +E + + + + +W +++NA +H
Sbjct: 587 IAS------------SLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 133/257 (51%), Gaps = 29/257 (11%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD VSW T++ G + +A++ F++M+ + + +P++ +++N+++A L G+
Sbjct: 312 RDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ-KPDQVSVLNLIAASGRSGNLLNGKE 370
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+Y + R L + +GN +I+MY KC V F + KD+ISW+T+I+G A N
Sbjct: 371 VHAY-AIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNE 429
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI------LFKAMSTVYEIV 177
C +A+ LF + + G+ D + +++ ACS GL + I +FK + +I+
Sbjct: 430 CHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFK--RDLADIM 485
Query: 178 PQTQHYACVVDMYGRAGLLEEA-EAF--IREMPIEAEWSVWGALLNACRIHRN-----DE 229
Q +V++YG G + A AF IR I + W +++ C +H E
Sbjct: 486 LQN----AIVNVYGEVGHRDYARRAFESIRSKDIVS----WTSMITCC-VHNGLPVEALE 536
Query: 230 MFDPIRQELVNKKGVSV 246
+F ++Q + +++
Sbjct: 537 LFYSLKQTNIQPDSIAI 553
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K D VSW ++I + G C EA+S+F+ M++ A N T V L S +
Sbjct: 208 MEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVAS-NTYTFVAALQGVEDPSFVKL 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + + V NA+I MY KCG + A +VF + +D +SW+T++SGL
Sbjct: 267 GMGIHG-AALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLV 325
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
N R AL F M + PD V+ + LI+A G
Sbjct: 326 QNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSG 363
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 18/229 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R + +W M+G + G EA+ +++EM + + T +VL AC ++
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEM-RVLGVAIDACTFPSVLKACGALGESRL 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
G +H ++ + V NA+I MY KCGD+G A +F+ M+ +D +SW+++IS
Sbjct: 164 GAEIHG-VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
G +AL LF M GV + TF+A + V G+ ++
Sbjct: 223 HVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------GIHGAAL 275
Query: 179 QTQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ H+A ++ MY + G +E+AE M + ++ W LL+
Sbjct: 276 KSNHFADVYVANALIAMYAKCGRMEDAERVFASM-LCRDYVSWNTLLSG 323
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 27/186 (14%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C ++ AL GQ +H+ + + +S + +++MY KCG + A++VF+ + +
Sbjct: 52 LLDLCVAVKALPQGQQLHARLLKSH---LSAFLATKLLHMYEKCGSLKDAVKVFDEMTER 108
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------H 156
+ +W+ ++ +G +A++L+ M + GV D TF +++ AC H
Sbjct: 109 TIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIH 168
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-W 215
G V G F + ++ MYG+ G L A + +E E +V W
Sbjct: 169 GVAVKCGFGEFVFVCNA------------LIAMYGKCGDLGGARVLFDGIMMEKEDTVSW 216
Query: 216 GALLNA 221
++++A
Sbjct: 217 NSIISA 222
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 127/325 (39%), Positives = 180/325 (55%), Gaps = 37/325 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT------------------------- 35
MP ++ VSW TMI GYA+ G + A +FQ M +
Sbjct: 385 MPIKNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSL 444
Query: 36 ----KEAE-PNEATLVNVLSACSSISALSFGQYVHSYI-STRY--DLSVSNLVGNAVINM 87
KE + P+++T LSAC++++AL G +H YI + Y DL VGNA+I M
Sbjct: 445 VMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDL----FVGNALIAM 500
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y KCG V A QVF + D+ISW+++ISG A+NG +A + F M V PD+VTF
Sbjct: 501 YAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTF 560
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
I ++SACSH GL +QGL +FK M + I P +HY+C+VD+ GR G LEEA +R M
Sbjct: 561 IGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMK 620
Query: 208 IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267
++A +WG+LL ACR+H+N E+ + L + + + +SN A A RWE+ +
Sbjct: 621 VKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVER 680
Query: 268 IRDEIRRMGLKKKTGCSWIEVNPSI 292
+R +R K+ GCSWIEV I
Sbjct: 681 VRMLMRGKRAGKQPGCSWIEVQNQI 705
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 24/236 (10%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D W MI GYA++G +A VF++M +++S S ++ +
Sbjct: 139 KLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAK-----------DLVSYNSMLAGYTQNG 187
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + ++ N+V N ++ YVK GD+ A Q+F + + +SW T++ GLA
Sbjct: 188 KMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAK 247
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G +A +LF M V V++ A+I+ VD+ + LFK M +
Sbjct: 248 YGKMAEARELFDRMPSKNV----VSWNAMIATYVQDLQVDEAVKLFKKMPH-----KDSV 298
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPI 234
+ +++ Y R G L+EA +MP I A+ ++ L+ RI D+MF I
Sbjct: 299 SWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRI 354
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 106/233 (45%), Gaps = 34/233 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME------------------KTKEAEPNE 42
MP +D VSWTT+I GY G +EA V+ +M + EA+
Sbjct: 292 MPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMF 351
Query: 43 ATL--VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQ 99
+ + +V+ S I+ S + ++ + + N V N +I+ Y + G + A +
Sbjct: 352 SRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATE 411
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F + K+++SW+++I+G N AL+ +M G PD TF +SAC++
Sbjct: 412 IFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACAN--- 468
Query: 160 VDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEAFIREM 206
L + + ++E + ++ + ++ MY + G ++ AE R++
Sbjct: 469 ----LAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDI 517
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW MI Y + +EAV +F++M + + +++ + L
Sbjct: 261 MPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM-----PHKDSVSWTTIINGYIRVGKLDE 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V++ + + D++ A+++ ++ G + A Q+F+ + D++ W+++I+G +
Sbjct: 316 ARQVYNQMPCK-DITAQ----TALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYS 370
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+G +AL LF M I + V++ +IS + G +D+ +F+AM
Sbjct: 371 RSGRMDEALNLFRQMPI----KNSVSWNTMISGYAQAGQMDRATEIFQAM 416
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 74/148 (50%), Gaps = 15/148 (10%)
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V I ++++ NLV N++I++ K + A Q+F+ ++ ++++SW+T+I+G N
Sbjct: 33 VEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHN 92
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+A +LF +M D+ ++ +I+ + G +++ L E+VP
Sbjct: 93 NMVEEASELFDVMPER----DNFSWALMITCYTRKGKLEKARELL-------ELVPDKLD 141
Query: 183 YAC---VVDMYGRAGLLEEAEAFIREMP 207
AC ++ Y + G +A+ +MP
Sbjct: 142 TACWNAMIAGYAKKGQFNDAKKVFEQMP 169
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 190/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW ++ G+A+ G +A+ +F EM K ++ P+ T+V++L AC+SI AL
Sbjct: 409 MSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQ-RPDSITVVSLLQACASIGALHQ 467
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H+++ T+ L L+ A+++MY KCGD+G A + F+ + +D++SWS++I+G
Sbjct: 468 GKWIHNFV-TKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYG 526
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL+++S + G+ P+ V +++++SACSH GLVDQGL F +M+ + I P+
Sbjct: 527 SHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRL 586
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ RAG +EEA +F + M + V G LL+ACR N E+ D + +E+V
Sbjct: 587 EHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGDIVAREIVI 646
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K + G + +++++A RW+ ++ +++ + LKK G S+IE++ +I
Sbjct: 647 LKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 16/225 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV+SWT MI G + + AV+VF+ M K++ P+ AT+ +VL+AC+ + +
Sbjct: 308 MMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSR-VMPSTATIASVLAACAELGSFPL 366
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH YI R + + N+++ MY KCG + + VF+ ++ +D++SW+ ++SG A
Sbjct: 367 GTSVHGYI-LRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHA 425
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL LF+ M PD +T ++L+ AC+ G + QG ++ V ++
Sbjct: 426 QNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQG-------KWIHNFVTKS 478
Query: 181 QHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
C+ VDMY + G L A+ MP + + W +++
Sbjct: 479 CLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWSSII 522
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 13/211 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV+SW +++ GYA+ G E + + M KT EP++ T +++SA + S L
Sbjct: 207 MDARDVISWNSLVSGYAQLGNIREVLQLLIRM-KTDGIEPDQQTFGSLVSAAAMQSKLGV 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I R L + + ++I MY+KCG+V A ++F + +KD+ISW+ +ISGL
Sbjct: 266 GKMVHGHI-LRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLV 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
N C A+ +F M+ + V P T ++++AC+ G G IL + + +
Sbjct: 325 QNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIK--LD 382
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I Q +V MY + G LE++ + M
Sbjct: 383 IPSQNS----LVTMYAKCGHLEQSCSVFDRM 409
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 16/175 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VV WTTMIG Y G + A S++ M + + +P+ T++ +LS + L
Sbjct: 109 MDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRR-QGIQPSSVTMLGLLSGVLELVHL-- 165
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Q +H+ + +Y + N+++N+Y KCG V A +F ++ +D+ISW++++SG A
Sbjct: 166 -QCLHACV-IQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYA 223
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
G R+ LQL M +G+ PD TF +L+SA + HG ++ GL
Sbjct: 224 QLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGL 278
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 8 SWTTMIGGYAERG-FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
S+ +I + G FC+ ++ + M T + P+ T +++ AC+S+ S G H
Sbjct: 15 SYNAIINRLSTAGAFCDVLLT-YSSMLST-DTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+ S + + ++IN Y K G A +VF+ + ++++ W+T+I G
Sbjct: 73 RVIVD-GYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHD 131
Query: 127 QALQLFSLMIINGVFPDDVTFIALISA--------CSHGGLVDQGLILFKAMSTVYEIVP 178
A ++++M G+ P VT + L+S C H ++ G A++
Sbjct: 132 VAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALAN------ 185
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREM 206
++++Y + G +E+A+A M
Sbjct: 186 ------SMLNVYCKCGRVEDAQALFELM 207
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 185/286 (64%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+ VSW +MI GY +G EA+ +F M++ + +P+E T+V++L+AC+ + AL G++
Sbjct: 192 RNTVSWNSMISGYVRKGRFFEAMELFSRMQE-EGIKPSEFTMVSLLNACACLGALRQGEW 250
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI + + +++++V A+I+MY KCG + A+QVF K + W+++I GLAM+G
Sbjct: 251 IHDYI-VKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSG 309
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A++LFS + + + PD V+FI +++AC+H G+VD+ F MS Y+I P +HY
Sbjct: 310 RGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHY 369
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
+C+VD+ GRAGLLEEAE I+ MP+ + +WG+LL++CR + N EM + +
Sbjct: 370 SCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDP 429
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+F L+SN +A + +E+A + R ++ + K+ GCS IEVN
Sbjct: 430 NESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVN 475
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 111/247 (44%), Gaps = 43/247 (17%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVHSY 67
W T+I G+++ A+S+F +M T +P T +V A + + G +H
Sbjct: 63 WNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGR 122
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG---- 123
+ + L + N ++NMYV CG +G A ++F+ D+++W+T+I GLA G
Sbjct: 123 V-IKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDK 181
Query: 124 -------------------------CGR--QALQLFSLMIINGVFPDDVTFIALISACSH 156
GR +A++LFS M G+ P + T ++L++AC+
Sbjct: 182 SRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACAC 241
Query: 157 GGLVDQGL----ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
G + QG + K + IV ++DMY + G +++A + P +
Sbjct: 242 LGALRQGEWIHDYIVKNNFALNSIV-----ITAIIDMYSKCGSIDKALQVFKSAPKKG-L 295
Query: 213 SVWGALL 219
S W +L+
Sbjct: 296 SCWNSLI 302
Score = 41.6 bits (96), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 81/199 (40%), Gaps = 39/199 (19%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
PK+ + W ++I G A G EAV +F ++E + +P+ + + VL+AC+ +
Sbjct: 291 PKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSN-LKPDHVSFIGVLTACNHAGMVDRA 349
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +S Y + S + +S ++ L
Sbjct: 350 KDYFLLMSETYKIEPS-------------------------------IKHYSCMVDVLGR 378
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QT 180
G +A +L M +N PD + + +L+S+C G ++ +A V E+ P ++
Sbjct: 379 AGLLEEAEELIKSMPVN---PDAIIWGSLLSSCREYGNIEMAK---QAAKRVNELDPNES 432
Query: 181 QHYACVVDMYGRAGLLEEA 199
+ + ++Y EEA
Sbjct: 433 SSFILLSNVYAAHNHFEEA 451
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING--VFPDDVTFIA 149
GD+ A VF + ++ W+T+I G + + A+ LF M+ P +T+ +
Sbjct: 43 GDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPS 102
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAE 200
+ A + GL +G L V ++ + + +++MY G L EA+
Sbjct: 103 VFKAYAQLGLAHEGAQLH---GRVIKLGLENDQFIQNTILNMYVNCGFLGEAQ 152
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 175/288 (60%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT M+ G+A+ EA+ F++M++ E +E TL+ V+SAC+ + A +
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFG-VETDEITLIGVISACAQLGAAKY 297
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++ + + S +VG+A+I+MY KCG VG A +VF + +++ S+S++I G
Sbjct: 298 ADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGF 357
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G A++LF M+ + P+ VTFI +++ACSH G+V+QG +F+ M Y I P
Sbjct: 358 AMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPS 417
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C+VD+ GRAG L+EA ++ MPIE VWGALL ACRIH++ ++ L
Sbjct: 418 ADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLF 477
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +G + L++N +A RW D + +R +R GL+K SWIE
Sbjct: 478 ELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIE 525
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 51/298 (17%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I GY +E+ + M K + P T + AC + + G+ +H
Sbjct: 114 YNALIRGYLIEERLKESTEFYSLMRK-EGVVPVSFTFTALFKACGAKMDVGLGRQIHGQT 172
Query: 69 STRYDLSVSNLVGNAVINMYVKCG-------------------------------DVGIA 97
VGN++I+MY+KCG ++ A
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
++F+ L KDM++W+ ++SG A N R+A+ F M GV D++T I +ISAC+
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQL 292
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQ----HYACV----VDMYGRAGLLEEAEAFIREMPIE 209
G K + ++ +++ H V +DMY + G + +A + M
Sbjct: 293 GAA-------KYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKER 345
Query: 210 AEWSVWGALLNAC---RIHRNDEMFDP-IRQELVNKKGVSVGTFALMSNTFAGADRWE 263
+S +L R+H ++FD ++ E+ + +G S+ W+
Sbjct: 346 NVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQ 403
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+ +FN + Y + ++ +I G + +++ + +SLM GV P TF AL AC G
Sbjct: 100 LSIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKAC--G 157
Query: 158 GLVDQGL-ILFKAMSTVYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+D GL + + + H ++DMY + G LE EMP S W
Sbjct: 158 AKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVIS-W 216
Query: 216 GALLNA 221
L++A
Sbjct: 217 TELISA 222
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 110/249 (44%), Positives = 167/249 (67%), Gaps = 2/249 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW +M+ YA+ G EA+++F +M +P+EAT+V++LSAC+ + AL
Sbjct: 153 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVG-VKPSEATVVSLLSACAHLGALDK 211
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H+YI+ + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+A
Sbjct: 212 GLHLHTYINDNR-IEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 270
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G ++A QLF M GV P+D+TF+A++SACSH G+VD+G L MS+ Y I P+
Sbjct: 271 ILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKV 330
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CV+D+ RAGLLEEA I MP+E GALL CRIH N E+ + + + L+N
Sbjct: 331 EHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLIN 390
Query: 241 KKGVSVGTF 249
+ G
Sbjct: 391 LQPCQSGRL 399
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW MI GY +RG A VF M +V+S + I+ +
Sbjct: 63 RDLVSWNAMIDGYVKRGEMGHARMVFDRM-----------VCRDVISWNTMINGYAIVGK 111
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ ++ NLV N+++ +VKCG+V A +F+ + +D++SW+++++ A
Sbjct: 112 IDEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 171
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVP 178
G +AL LF M GV P + T ++L+SAC+H G +D+GL L ++ V IV
Sbjct: 172 GKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 231
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREM 206
+VDMY + G + A M
Sbjct: 232 TA-----LVDMYAKCGKISLATQVFNAM 254
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
V+ AC+ S FG VH+++ + ++ + + +++I++Y D+G A Q+FN+ + +
Sbjct: 6 VIKACNESSVTWFGLLVHTHVKSGFE--CDSYIVSSLIHLYANGKDLGAAKQLFNLCSDR 63
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
D++SW+ +I G G A +F M+ V +++ +I+ + G +D+ LF
Sbjct: 64 DLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDV----ISWNTMINGYAIVGKIDEAKRLF 119
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
M + + ++ + + G +E+A EMP S W ++L AC
Sbjct: 120 DEMPERNLVSXNS-----MLXGFVKCGNVEDAFGLFSEMPCRDVVS-WNSML-AC 167
>gi|125595828|gb|EAZ35608.1| hypothetical protein OsJ_19898 [Oryza sativa Japonica Group]
Length = 602
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 175/292 (59%), Gaps = 5/292 (1%)
Query: 1 MPK--RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSIS 56
MP+ RD+VSW +I +A+ G EAV +++ M + EP+ TLV VLS+C+
Sbjct: 182 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTG 241
Query: 57 ALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A G V Y+ NL + NA+IN + +CG + A ++F+ + + ++SW+T+
Sbjct: 242 ARRVGLDVERYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTTL 301
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G M+G G A+ LF M+ PD V + L+SACSH G+ D+G F M Y
Sbjct: 302 IIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC 361
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P+ +HY C+VD+ GRAG L+EA I MP+ A+ +VWGALL AC+IH+N EM +
Sbjct: 362 LRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAF 421
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +V+ + +VG + LM+N +A A + + K+R +RR GL+K+ GCS++E
Sbjct: 422 ERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVE 473
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 184/294 (62%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV++WT MI GY + G +EA+ +F+ M ++ EPN TL VLSAC+S++ L +
Sbjct: 390 MNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGP-EPNSHTLAAVLSACASLAYLGY 448
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISG 118
G+ +H I + + SVS V NA+I +Y + G V +A +VF+ + + K+ ++W+++I
Sbjct: 449 GKQIHCRAIRSLQEQSVS--VSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVA 506
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G G QA+ LF M+ GV PD VT+I + SAC+H G +D+G ++ M + IVP
Sbjct: 507 LAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVP 566
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ HYAC+VD+ RAGLL EA FI+ MP+ + VWG+LL ACR+ +N ++ + ++L
Sbjct: 567 EMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKL 626
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ + G ++ ++N ++ RW DA +I + +KK+TG SW V +
Sbjct: 627 LSIDPDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKV 680
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 123/259 (47%), Gaps = 37/259 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R +VSW +I GY + G + A+ F M EP+E T+ +VLSAC+++ L
Sbjct: 255 MEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKM 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ +HSYI R + S+ + NA+I+
Sbjct: 315 GKQMHSYI-LRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEG 373
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD A +VF+++ +D+I+W+ +I G NG +A++LF MI +G P+ T
Sbjct: 374 YVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTL 433
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++SAC+ + G I +A+ ++ E + ++ +Y R+G + A ++
Sbjct: 434 AAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSN--AIITVYARSGSVPLARRVFDQI 491
Query: 207 PIEAEWSVWGALLNACRIH 225
E W +++ A H
Sbjct: 492 CWRKETVTWTSMIVALAQH 510
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 45/237 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT M+ G G +AV F +M A P++ L NVLS+C++ A
Sbjct: 123 MPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA-PSQFMLTNVLSSCAATEARGI 181
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD--------------------------- 93
G+ VHS++ + LS V N+V+ MY KCGD
Sbjct: 182 GRKVHSFV-IKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYT 240
Query: 94 ----VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFI 148
+ +A+ +F + + ++SW+ +I+G NG AL+ FS M+ + + PD+ T
Sbjct: 241 HQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVT 300
Query: 149 ALISACSHGGLVDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++SAC++ ++ G IL M +I+ ++ Y ++G +E A
Sbjct: 301 SVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMN------ALISTYAKSGSVETAR 351
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++++MY K G + A VF + +D +SW+ ++ GL G A++ F M+ G+
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLA 160
Query: 142 PDDVTFIALISAC--SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
P ++S+C + + + + F + VP V+ MYG+ G E A
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVAN---SVLYMYGKCGDAETA 217
Query: 200 EAFIREMPIEAEWSVWGALLN 220
A M + +E S W A+++
Sbjct: 218 RAVFERMKVRSE-SSWNAMVS 237
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 174/293 (59%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+++W T+I C + + M +T+ P+ AT++++L CS ++A
Sbjct: 536 MKARDIITWNTIIASCVHSEDCNLGLRMISRM-RTEGVTPDMATMLSILPVCSLLAAKRQ 594
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + L VGN +I MY KCG + + QVF ++ KD+++W+ +IS
Sbjct: 595 GKEIHGCI-FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 653
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A++ F M G+ PD V F+A+I ACSH GLV++GL F M Y+I P+
Sbjct: 654 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 713
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ R+ LL++AE FI MP++ + S+WGALL+ACR+ + E+ + + ++
Sbjct: 714 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIE 773
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G + L+SN +A +W+ IR I+ GLKK GCSW+E+ ++
Sbjct: 774 LNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVY 826
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 15/232 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSW TMI GY++ G EE++ +F EM + +P+ T+ ++L AC + L F
Sbjct: 336 MVLRDAVSWNTMICGYSQVGLYEESIKLFMEM--VNQFKPDLLTITSILQACGHLGDLEF 393
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+YVH Y I++ Y+ + N +INMY KCG++ + +VF+ + KD +SW+++I+
Sbjct: 394 GKYVHDYMITSGYECDTT--ASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVY 451
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEI 176
NG +A++LF +M + V PD VT++ L+S + G + G L M I
Sbjct: 452 IQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNI 510
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND 228
V +VDMY + G + ++ M + W ++ +C +H D
Sbjct: 511 VVSNT----LVDMYAKCGEMGDSLKVFENMKAR-DIITWNTIIASC-VHSED 556
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW ++I GY G+ EA+ ++ + P+ T+ +VL AC + ++
Sbjct: 235 MPLRDVVSWNSLISGYNANGYWNEALEIYYRF-RNLGVVPDSYTMSSVLRACGGLGSVEE 293
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H I + + +V N +++MY K + ++F+ + +D +SW+T+I G +
Sbjct: 294 GDIIHGLIE-KIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYS 352
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQ 179
G ++++LF + ++N PD +T +++ AC H G ++ G + M T YE
Sbjct: 353 QVGLYEESIKLF-MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC--D 409
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
T +++MY + G L ++ M + S W +++N
Sbjct: 410 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMIN 449
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VSW +MI Y + G +EA+ +F+ M+ + +P+ T V +LS + + L
Sbjct: 436 MKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT--DVKPDSVTYVMLLSMSTQLGDLXL 493
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ + + + +V N +++MY KCG++G +++VF + +D+I+W+T+I+
Sbjct: 494 GKELHCDLA-KMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 552
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
+ L++ S M GV PD T ++++ CS QG +FK +
Sbjct: 553 HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL--GLESD 610
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
VP +++MY + G L + + M + + W AL++AC ++
Sbjct: 611 VPVGN---VLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMY 655
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +V W ++I G EA+S++ E ++ + +P+ T +V++AC+ +
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIR-LQPDTYTFPSVINACAGLLDFEMA 193
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + +GNA+I+MY + D+ A +VF + +D++SW+++ISG
Sbjct: 194 KSIHDRV-LXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 252
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
NG +AL+++ GV PD T +++ AC G V++G I+
Sbjct: 253 NGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDII 297
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 94/207 (45%), Gaps = 19/207 (9%)
Query: 25 AVSVFQEMEKTKEA--EPNEATLVNVLS-ACSSISALSFGQYVHSYISTRYDLSVSNLVG 81
+ +F + KT E + TL + +S A +S + + +HS I T L S +
Sbjct: 52 STKLFSRVMKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIIT-LGLHHSVIFS 110
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMI-SWSTVISGLAMNGCGRQALQLFSLMIINGV 140
+I Y D + VF + + + + W+++I L NG +AL L+S +
Sbjct: 111 AKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRL 170
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA------CVVDMYGRAG 194
PD TF ++I+AC+ GL+ F+ ++++ V + ++DMY R
Sbjct: 171 QPDTYTFPSVINACA-------GLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFN 223
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNA 221
L++A EMP+ S W +L++
Sbjct: 224 DLDKARKVFEEMPLRDVVS-WNSLISG 249
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 178/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKR+V++WTTM+ GY + E A+ +F M + +PN+ T + L ACS+++AL
Sbjct: 285 MPKRNVITWTTMMNGYLQCMQSEMALKLFNCM-LVQGIQPNQVTFLGSLDACSNLAALCE 343
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + V + ++N+Y KCG++ +A VF+ KD+ISW+ +I+ A
Sbjct: 344 GQQVHQMI-CKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYA 402
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M NG P+D T++ L+SACSH GLVD+GL +F++M IV +
Sbjct: 403 HHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRD 462
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ RAG LE+A+ I I+ S VW ALL C H N+ + D + L+
Sbjct: 463 EHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLL 522
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ L+ N +A A +W++A +IR E+ GLKK+ GCSWIEV
Sbjct: 523 EAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEV 571
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 26/219 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSWT M+ YA RG +EA +F +A N T +LS + +
Sbjct: 67 MPDRDVVSWTAMVAAYARRGMLQEARVLFDR----PDARRNVVTWTALLSGYARARRVDE 122
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + ++ R N+V N ++ Y G V A +FN + +D SW+ ++ GL
Sbjct: 123 AEALFEGMAER------NVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGL 176
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +A ++F M + V +++ +IS + G VD +LF AM P+
Sbjct: 177 VRSGSLERARKMFERMPVRDV----MSWTTMISGLARNGSVDDAWVLFDAM-------PE 225
Query: 180 TQ--HYACVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+ ++ Y R +EEA +MPI A W++
Sbjct: 226 RNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNI 264
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SWTTMI G A G ++A +F M + NV+S + IS +
Sbjct: 192 MPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPER-----------NVVSWNAMISGYAR 240
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + + ++ N +I +++ D+ A Q+F+ + +++I+W+T+++G
Sbjct: 241 NHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGY 300
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AL+LF+ M++ G+ P+ VTF+ + ACS+ + +G V++++ +
Sbjct: 301 LQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEG-------QQVHQMICK 353
Query: 180 TQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T + ++++Y + G + A + +E + W ++ A H
Sbjct: 354 TPSQFDTFVESTLMNLYAKCGEIRLARNVF-DFSMEKDLISWNGIIAAYAHH 404
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 185/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SWT M+ G+ ++GF EEA+S F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 113 MLNRDLISWTAMVNGFVKKGFHEEALSWFREMQISG-VKPDYVAIIAALAACTNLGALSF 171
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A
Sbjct: 172 GLWIHRYVMSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFA 230
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M Y I P+
Sbjct: 231 ANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRI 290
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL AC+ H N+ + + + + L
Sbjct: 291 EHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACKNHGNNTLLAERLMKHLS 350
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 351 DLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 400
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 38/203 (18%)
Query: 39 EPNEATLVNVLSACSSISALS--FGQYVHSYISTRYDLSVSN-LVGNAVINMYVK----- 90
EPN T + +LS C + S G +H Y + + L ++ +VG A++ MY K
Sbjct: 15 EPNHITFIALLSGCGDFPSGSEALGDLLHGY-ACKLGLDRTHVMVGTAILGMYSKRGRFR 73
Query: 91 --------------------------CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
G V A+++F+ + +D+ISW+ +++G G
Sbjct: 74 KARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGF 133
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHY 183
+AL F M I+GV PD V IA ++AC++ G + GL + + MS ++ + +
Sbjct: 134 HEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSN- 192
Query: 184 ACVVDMYGRAGLLEEAEAFIREM 206
++D+Y R G +E A +M
Sbjct: 193 -SLIDLYCRCGCVEFARQVFDKM 214
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSWTT++ Y++ EEA++ F M + A PN+ T +VL +C+S+ L +
Sbjct: 433 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA-PNQFTFSSVLISCASLCFLEY 491
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + L + +A+I+MY KCG + A +VF+ ++ D++SW+ +ISG A
Sbjct: 492 GRQVHGLL-CKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 550
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ALQLF M ++G+ + VT + ++ ACSHGG+V++GL F+ M Y +VP+
Sbjct: 551 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEM 610
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR G L++A FIR+MP+E VW LL CR+H N E+ + +++++
Sbjct: 611 EHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILS 670
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ T+ L+SNT+ +ED +R+ ++ G+KK+ G SWI V
Sbjct: 671 IRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 5/202 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT MI G E G + F EM + P++ ++ +C + +L
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSG-ILPDKFAYSAIIQSCIGLDSLEL 185
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ I R + V +++NMY K G + + VFNM+ + +SW+ +ISG
Sbjct: 186 GKMVHAQIVMR-GFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 244
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
NG +A LF M P+ T +++ A G LVD + + ++ I
Sbjct: 245 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV--GKLVDVNMGKEVQNCASELGIEGN 302
Query: 180 TQHYACVVDMYGRAGLLEEAEA 201
++DMY + G L +A +
Sbjct: 303 VLVGTALIDMYSKCGSLHDARS 324
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + VSW MI G G EA +F M K PN TLV+V A + ++
Sbjct: 228 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNM 286
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISG 118
G+ V + ++ + + LVG A+I+MY KCG + A VF N + W+ +ISG
Sbjct: 287 GKEVQN-CASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISG 345
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-----GLVDQGLILFKAMSTV 173
+ +GC ++AL+L+ M NG+ D T+ ++ +A + G V G++L + +
Sbjct: 346 YSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLM 405
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V + D Y + G LE+ M E + W L+ A
Sbjct: 406 VVSVNNA-----IADAYSKCGFLEDVRKVFDRME-ERDIVSWTTLVTA 447
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 45 LVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
L++VL C+ ++ + VH + + ++ ++ N ++Y KC + A VF+
Sbjct: 67 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC--------- 154
+ +++ SW+ +I G +G + F M+ +G+ PD + A+I +C
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 186
Query: 155 --SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H +V +G +ST +++MY + G +E++ ++ M E
Sbjct: 187 KMVHAQIVMRGFATHIFVST------------SLLNMYAKLGSIEDS-YWVFNMMTEHNQ 233
Query: 213 SVWGALLNAC 222
W A+++ C
Sbjct: 234 VSWNAMISGC 243
>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 658
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 183/294 (62%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP ++ VSW+ MI +A+ +A+ +FQ M + + PN T+VN+L AC+ ++AL
Sbjct: 244 MPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALE 303
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI R S+ ++ NA+I MY +CG+V + +VF+ + +D++SW+++IS
Sbjct: 304 QGKLIHGYILRRQLDSILPVL-NALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIY 362
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G++A+Q+F MI GV P ++FI ++ ACSH GLV++G ILF++M + Y I P
Sbjct: 363 GMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPG 422
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L EA I +M E +VWG+LL +CRIH N E+ + L
Sbjct: 423 MEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLF 482
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A W +A + + GL+K GCSWIEV ++
Sbjct: 483 ELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVY 536
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS----SISAL 58
+R + W + A G +E + ++ +M + T VL AC S+ L
Sbjct: 141 ERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPS-DRFTYTYVLKACVVSELSVCPL 199
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H++I R+ + V ++++Y K G V A VF + K+ +SWS +I+
Sbjct: 200 RKGKEIHAHI-LRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258
Query: 119 LAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQ-----GLILFKAMS 171
A N +AL+LF LM+ P+ VT + ++ AC+ ++Q G IL + +
Sbjct: 259 FAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLD 318
Query: 172 TVYEIVPQTQHYACVVDMYGRAG 194
++ ++ ++ MYGR G
Sbjct: 319 SILPVL------NALITMYGRCG 335
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVG 95
E P + T +++ +C+ ++LS+G VH + + +D + +INMY + G +
Sbjct: 73 EPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFD--QDPFLATKLINMYYELGSID 130
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A++VF+ + + W+ + LAM G G++ L L+ M G D T+ ++ AC
Sbjct: 131 RALKVFDETRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKAC 189
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + D+V WT+MIGGY + G E+A+S++ ME + PNE T+ +VL ACSS++AL
Sbjct: 371 LQEPDIVLWTSMIGGYVQNGENEDALSLYGRME-MEGILPNELTMASVLKACSSLAALEQ 429
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + +Y + +G+A+ MY KCG + VF + +D+ISW+ +ISGL+
Sbjct: 430 GKQIHAR-TVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLS 488
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NGCG++AL+LF M + G PD VTF+ ++SACSH GLV++G F+ M + + P+
Sbjct: 489 QNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRV 548
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ RAG L+EA F I+ +W +L ACR +RN E+ ++L+
Sbjct: 549 EHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLME 608
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+S+ ++ RWED ++R ++ G+ K+ GCSWIE+ +
Sbjct: 609 LGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGV 660
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 114/194 (58%), Gaps = 7/194 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW TMI GYA + EA+ +F+ M + +E E NE +VLSA + ++
Sbjct: 169 MPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGE-NEFVFTSVLSALTLPELVNN 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H LS+ + VGNA++ MY KCG + A+Q F + K+ I+WS +I+G A
Sbjct: 228 GKQIHCIAVKNGLLSIVS-VGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYA 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL+LFS M ++G+ P + TF+ +I+ACS G +G + + ++ ++
Sbjct: 287 QSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGK---QVHDYLLKLGFES 343
Query: 181 QHY--ACVVDMYGR 192
Q Y +VDMY +
Sbjct: 344 QIYVMTALVDMYAK 357
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ ++W+ MI GYA+ G ++A+ +F M + P+E T V V++ACS + A G+
Sbjct: 273 KNSITWSAMITGYAQSGDSDKALKLFSSMHLSG-IRPSEFTFVGVINACSDLGAAWEGKQ 331
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH Y+ + V A+++MY KC + A + F+ L D++ W+++I G NG
Sbjct: 332 VHDYL-LKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNG 390
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
AL L+ M + G+ P+++T +++ ACS ++QG + A + Y +
Sbjct: 391 ENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQI-HARTVKYGFGLEVPIG 449
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + MY + G L++ R MP S W A+++
Sbjct: 450 SALSTMYAKCGCLKDGTLVFRRMPARDVIS-WNAMISG 486
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 9/200 (4%)
Query: 4 RDVVSWTTMIGGYAERG--FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
+DVVSW +I GY++ G + +FQ M + + PN T V +A S++ + G
Sbjct: 69 KDVVSWNCIINGYSQHGPSGSSHVMELFQRM-RAENTAPNAHTFAGVFTAASTLVDAAGG 127
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ H+ ++ + D VG++++NMY K G A +VF+ + ++ +SW+T+ISG A
Sbjct: 128 RLAHA-VAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQ 179
+AL LF LM ++ F +++SA + LV+ G + + + IV
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSV 246
Query: 180 TQHYACVVDMYGRAGLLEEA 199
+V MY + G L++A
Sbjct: 247 GN---ALVTMYAKCGSLDDA 263
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ + L + +L G+ +H+ I V + N+++N+Y KC + A
Sbjct: 4 PSNRSFFTALLQYTHNRSLQKGKALHAQIIKSSSSCV--YIANSLVNLYAKCQRLREAKF 61
Query: 100 VFNMLAYKDMISWSTVISGLAMNGC--GRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
VF + KD++SW+ +I+G + +G ++LF M P+ TF + +A S
Sbjct: 62 VFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAAS-- 119
Query: 158 GLVD-QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
LVD G L A++ + + +++MY +AGL EA MP
Sbjct: 120 TLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP 170
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 178/290 (61%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWT M+ GYA+ G EEAV F EM + +PNE T+ +VL AC+++ A+
Sbjct: 179 MPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMEL 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDMISWSTVISGL 119
G+ V Y + L + V NA++ MY KCG + A QVF + +D+ SW+++I
Sbjct: 239 GRKVEEYARGK-GLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAF 297
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R+AL LF + + GV PD +TF+ +I AC+HGGLV++G + F +M + + P+
Sbjct: 298 AVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPR 357
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL E+ + I MP+E + +WGALL AC H N E+ + +L+
Sbjct: 358 IEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLI 417
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + ++SN +A + +W+ ++ ++ KK G S+IE++
Sbjct: 418 HLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELD 467
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN- 138
V NA+++ Y K G V A ++F + ++++SW+ ++SG A NG +A++ F M
Sbjct: 155 VYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERA 214
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
GV P+++T +++ AC+ G ++ G + + + ++ +++MY + G + +
Sbjct: 215 GVQPNELTVSSVLPACAAVGAMELGRKV-EEYARGKGLLRNVYVANALLEMYSKCGSIRQ 273
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIH 225
A + + + + W +++ A +H
Sbjct: 274 AWQVFQGIGRQQDLCSWNSMIMAFAVH 300
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 180/288 (62%), Gaps = 4/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++V+SWT++I G EA+ FQ+M +PN TLV+VLSAC+ I ALS
Sbjct: 458 IPNKNVISWTSIILGLRLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSC 515
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++ + R L + NA+++MYV+CG + A FN KD+ SW+ +++G A
Sbjct: 516 GKEIHAH-ALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYA 573
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G A++LF MI + V PD++TF +L+ ACS G+V GL F++M + I P
Sbjct: 574 QQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA VVD+ GRAG LE+A FI++MPI+ + ++WGALLNACRI++N E+ + Q +
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFE 693
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
SVG + L+ N +A + +W++ ++R +R L GCSW+EV
Sbjct: 694 MDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEV 741
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 143/259 (55%), Gaps = 15/259 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW MI GY E C E + +F M + +P+ T+ +V+SAC ++
Sbjct: 256 MPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF-VDPDLMTMTSVISACEALGDERL 314
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y I T + VS V N++I M+ G A VF+ + +KD++SW+ +ISG
Sbjct: 315 GREVHGYVIKTGFVAEVS--VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYE 175
NG +A++ +++M GV PD++T +++SAC+ GL+D+G++L + T Y
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPI 234
IV + ++DMY + +++A +P + S W +++ R+ +R+ E
Sbjct: 433 IVANS-----LIDMYSKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFF 486
Query: 235 RQELVNKKGVSVGTFALMS 253
+Q +++ K SV +++S
Sbjct: 487 QQMILSLKPNSVTLVSVLS 505
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+ SW ++GGYA+ G+ +EA++++ M P+ T VL C + L+
Sbjct: 155 MAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLAR 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ RY V NA+I MYVKCGD+ A VF+ + +D ISW+ +ISG
Sbjct: 214 GREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYF 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N + L+LF +M V PD +T ++ISAC HG ++ G
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF----- 327
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V + ++ M+ G +EAE +M + + W A+++
Sbjct: 328 -------VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMISG 371
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 10/146 (6%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
+G E+A+ M++ + E T + +L C A S G VHSY+S +V+
Sbjct: 72 KGDLEKALIHLDSMQEL-QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK----TVTR 126
Query: 79 L---VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
L +GNA+++M+V+ GD+ A VF +A +D+ SW+ ++ G A G +AL L+ M
Sbjct: 127 LGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM 186
Query: 136 IINGVFPDDVTFIALISACSHGGLVD 161
+ G+ PD TF ++ C GGL D
Sbjct: 187 LWVGIRPDVYTFPCVLRTC--GGLPD 210
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ +SW +MIGGY G +EA+ +F +M++ + +P+E T+V++L+A + I AL
Sbjct: 216 MPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEER-IQPSEFTMVSLLNASAQIGALRQ 274
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI + +L ++ +V A+I+MY KCG +G A+QVF + + + SW+++I GLA
Sbjct: 275 GVWIHEYIK-KNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLA 333
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NGC ++A+ +F ++ + + PD ++F+A+++AC+HG +VD+G+ F M Y I P
Sbjct: 334 VNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSI 393
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VDM RAG LEEAE FI+ MPIE + +WG LL+ACRI+ N EM +++
Sbjct: 394 KHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCLLSACRIYGNTEMAKRAAEKVNE 453
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ LM+N A + + A + R +R ++K+ G S+IEV+ +
Sbjct: 454 LDPEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEV 505
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 113/257 (43%), Gaps = 37/257 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ SW T+I G+++ + A+ +F +M + + EP T ++ A S +
Sbjct: 83 MQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHD 142
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYV------------------------------- 89
G +H I + L + N ++ MY
Sbjct: 143 GAQLHGRI-IKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLA 201
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
KCG++ + ++F+ + K+ ISW+++I G NG ++AL+LF M + P + T ++
Sbjct: 202 KCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVS 261
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
L++A + G + QG+ + + + + ++DMY + G + A ++P
Sbjct: 262 LLNASAQIGALRQGVWIHEYIKK-NNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR 320
Query: 210 --AEWS--VWGALLNAC 222
+ W+ ++G +N C
Sbjct: 321 SLSSWNSMIFGLAVNGC 337
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 9/154 (5%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIAL 150
G++ A VF + ++ SW+TVI G + + + AL LF M+++ V P +T+ ++
Sbjct: 71 GNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSI 130
Query: 151 ISACSHGGLVDQGLILF-KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA-FIREMPI 208
A S GL G L + + + P ++ ++ MY G L EA F +EM
Sbjct: 131 FKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRN--TILYMYATGGFLSEARRIFNQEMEF 188
Query: 209 E-AEWSVWGALLNAC-RIHRNDEMFD--PIRQEL 238
+ W+ L C I + ++FD P++ +
Sbjct: 189 DVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPI 222
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/289 (41%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSWT+MI Y G EA+ VF M++T EP+ TLV++LSA +S+SAL+ G+
Sbjct: 377 KDVVSWTSMISCYVHNGLANEALGVFYLMKET-SVEPDSITLVSILSAAASLSALNKGKE 435
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H +I R + N++++MY CG + A +VF K ++ W+T+I+ M+G
Sbjct: 436 IHGFI-FRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHG 494
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G+ A++LFS+M + PD +TF+AL+ ACSH GL+++G L + M Y++ P +HY
Sbjct: 495 RGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHY 554
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRA LEEA F++ M IE VW A L ACRIH N ++ + Q+L++
Sbjct: 555 ACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDP 614
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
S G++ L+SN FA + RW+D ++R ++ GLKK GCSWIEV +
Sbjct: 615 DSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKV 663
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 31/238 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SWTT+I YA+ EA+ + ++++ TK + + + + L ACS + LS
Sbjct: 274 MINKDLISWTTVIAAYAQNNCHTEALKLLRKVQ-TKGMDVDTMMIGSTLLACSGLRCLSH 332
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH Y R +S+L+ N +I++Y CG++ A ++F + KD++SW+++IS
Sbjct: 333 AKEVHGYTLKR---GLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCY 389
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFK 168
NG +AL +F LM V PD +T ++++SA + HG + +G +L
Sbjct: 390 VHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFML-- 447
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH 225
STV + VDMY G LE A + FI +W ++NA +H
Sbjct: 448 EGSTVNSL----------VDMYACCGSLENAYKVFI--CTRSKSLVLWTTMINAYGMH 493
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ DVVSW ++I Y+ G C EA+ +F+EM+K N TLV L AC S G
Sbjct: 74 RNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVG-ANTYTLVAALQACEDSSFKKLGM 132
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+ I + + + V NA++ M+V+ G + A ++F+ L KD I+W+++I+G N
Sbjct: 133 EIHAAI-LKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQN 191
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +ALQ F + + PD+V+ I++++A G + G
Sbjct: 192 GLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNG 232
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 129/266 (48%), Gaps = 31/266 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D ++W +MI G+ + G EA+ F ++ +P+E +L+++L+A + L
Sbjct: 173 LDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDAN-LKPDEVSLISILAASGRLGYLLN 231
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y + L + +GN +I+MY KC V A VF+ + KD+ISW+TVI+ A
Sbjct: 232 GKEIHAYAMKNW-LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYA 290
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC------SHGGLVDQGLILFKAMSTVY 174
N C +AL+L + G+ D + + + AC SH V G L + +S
Sbjct: 291 QNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEV-HGYTLKRGLS--- 346
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+++ Q ++D+Y G + A + + S W +++ +C +H
Sbjct: 347 DLMMQNM----IIDVYADCGNINYATRMFESIKCKDVVS-WTSMI-SCYVHNG------- 393
Query: 235 RQELVNKKGVSVGTFALMSNTFAGAD 260
L N+ ++G F LM T D
Sbjct: 394 ---LANE---ALGVFYLMKETSVEPD 413
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
T VL AC + + G +H I YD V V N++++MY KC D+ A ++F+
Sbjct: 12 TFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIV--FVANSLVSMYAKCNDILGARKLFD 69
Query: 103 MLAYK-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + D++SW+++IS ++NG +AL LF M GV + T +A + AC
Sbjct: 70 RMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKK 129
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G+ + A+ +++ A +V M+ R G + A E+ E + W +++
Sbjct: 130 LGMEIHAAILKSNQVLDVYVANA-LVAMHVRFGKMSYAARIFDELD-EKDNITWNSMI 185
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 174/293 (59%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK +VVSW MI GY + G EA+ +F +M K +P+ T +VL ACS ++ L
Sbjct: 369 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAG-VKPDAITFTSVLPACSQLAVLEK 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++I L ++ +V A+++MY KCG V A+ +FN L +D +SW+++I+
Sbjct: 428 GKEIHNFI-IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYG 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL+LF M + PD VTF+A++SACSH GLVD+G F M Y P
Sbjct: 487 SHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAV 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++D+ GR G L EA ++ P I + + L +AC +H+ ++ + I + L+
Sbjct: 547 EHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLI 606
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K T+ ++SN +A +W++ K+R +I+ +GLKK GCSWIEV I
Sbjct: 607 EKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRI 659
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 127/227 (55%), Gaps = 12/227 (5%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++VVSW +MI GY+ +G + + +F+ M++ + P TL ++L ACS L G+
Sbjct: 270 RKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE-EGIRPTLTTLSSILMACSRSVNLQLGK 328
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++H YI R + V +++I++Y KCG++G A VF + +++SW+ +ISG
Sbjct: 329 FIHGYI-IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKV 387
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEIVP 178
G +AL +F+ M GV PD +TF +++ ACS ++++G + ++ + E+V
Sbjct: 388 GSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV- 446
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G ++EA ++P E ++ W +++ A H
Sbjct: 447 ----MGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSH 488
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 115/213 (53%), Gaps = 15/213 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW +I Y + G E+A+ +F+EM K +P+ TL V+S+C+ + L
Sbjct: 167 MPERDVASWNNVISCYYQDGQPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLER 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R ++ V +A+++MY KCG + +A +VF + K+++SW+++I+G +
Sbjct: 226 GKEIHMEL-VRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYS 284
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH------GGLVDQGLILFKAMSTVY 174
+ G + ++LF M G+ P T +++ ACS G + +I + + ++
Sbjct: 285 LKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIF 344
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++D+Y + G + AE + MP
Sbjct: 345 V-------NSSLIDLYFKCGNIGSAENVFQNMP 370
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W ++ + E + VF + +P+ T +VL ACS + + +G+ V
Sbjct: 69 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+++ + ++ +V ++ + MY KC AI++F+ + +D+ SW+ VIS +G
Sbjct: 129 HTHV-IKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQ 187
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTV 173
+AL+LF M ++G PD VT +IS+C+ H LV G L +S+
Sbjct: 188 PEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA 247
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+VDMYG+ G LE A+ ++
Sbjct: 248 ------------LVDMYGKCGCLEMAKEVFEQI 268
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 178/290 (61%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWT M+ GYA+ G EEAV F EM + +PNE T+ +VL AC+++ A+
Sbjct: 179 MPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMEL 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA-YKDMISWSTVISGL 119
G+ V Y + L + V NA++ MY KCG + A QVF + +D+ SW+++I
Sbjct: 239 GRKVEEYARGK-GLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAF 297
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R+AL LF + + GV PD +TF+ +I AC+HGGLV++G + F +M + + P+
Sbjct: 298 AVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGKLFFDSMEAEFSLKPR 357
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL E+ + I MP+E + +WGALL AC H N E+ + +L+
Sbjct: 358 IEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLGACSFHGNVELAELAMDKLI 417
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + ++SN +A + +W+ ++ ++ KK G S+IE++
Sbjct: 418 HLEPQNTANLVILSNIYASSGKWDGVAQVWKLLKEKDHKKSAGYSFIELD 467
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN- 138
V NA+++ Y K G V A ++F + ++++SW+ ++SG A NG +A++ F M
Sbjct: 155 VYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERA 214
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
GV P+++T +++ AC+ G ++ G + + + ++ +++MY + G + +
Sbjct: 215 GVQPNELTVSSVLPACAAVGAMELGRKV-EEYARGKGLLRNVYVANALLEMYSKCGSIRQ 273
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIH 225
A + + + + W +++ A +H
Sbjct: 274 AWQVFQGIGRQQDLCSWNSMIMAFAVH 300
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 176/288 (61%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV++ T++ GYA+ G+ EA+ +F EM++ P+E TLV LSA S + +
Sbjct: 313 MPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEK 372
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H+Y +SV+ V A+I+MY KCG + AI +F+ + K + W+ +ISG+A
Sbjct: 373 AASMHNYF-LENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMA 431
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G+ A + M V PD +TFI +++AC+H GLV +GLI F+ M V+++ P+
Sbjct: 432 RNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKL 491
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ G+AGL+E A FI EMPIE +W LL+AC+ H N + + I + L+
Sbjct: 492 QHYGCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMT 551
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++ L+SN +A W A+K+R +++ L K GCSWIE+
Sbjct: 552 MDSCNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIEL 599
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 23/207 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VS+ +MI GY + G + A +F M P E N++S S + F
Sbjct: 186 MPIQDSVSYNSMIDGYVKSGTIDLARELFDSM-------PLEDK--NLISWNSMLGG--F 234
Query: 61 GQY---VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
Q + + + +LV N +I + KCG + A +FN + +D+ISWS +I
Sbjct: 235 AQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMI 294
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A G + A LF M PD V F +++ + G + L +F M
Sbjct: 295 DGYAKLGDIKVARTLFDEM------PDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQS 348
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEA 201
+ P + + G +E+A +
Sbjct: 349 NLSPDETTLVVALSAISQLGHVEKAAS 375
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L AC+ + + G+ +H + + ++ + + N +I MY++CGD+ A QVF+ + +
Sbjct: 131 ILKACARVCLVEEGKQIHGLL-MKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQ 189
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
D +S++++I G +G A +LF M + +D I+ S G+ L
Sbjct: 190 DSVSYNSMIDGYVKSGTIDLARELFDSMPL-----EDKNLISWNSMLGGFAQTKDGIGL- 243
Query: 168 KAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMP 207
++E +P+ + ++ + + G +E A + MP
Sbjct: 244 --ALELFEKMPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMP 283
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
D W+ VI + +AL LF +M+ NG D +F ++ AC+ LV++G +
Sbjct: 89 DPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIH 148
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ + EI C++ MY R G +E A MPI+
Sbjct: 149 GLLMKL-EIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQ 189
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW +I GYA+ G + AV +M++ ++ PN+ + V++L+ACSS SAL
Sbjct: 694 MPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQE-QDVVPNKFSFVSLLNACSSFSALEE 752
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ I R L VG A+I+MY KCG G A +VF+ + K++++W+ +I+ A
Sbjct: 753 GKRVHAEIVKR-KLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA 811
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL F+ M G+ PD TF +++SAC+H GLV +G +F +M + Y ++P
Sbjct: 812 QHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTI 871
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+V + GRA +EAE I +MP + +VW LL ACRIH N + + +
Sbjct: 872 EHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALK 931
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN +A A RW+D KIR + G++K+ G SWIEV+
Sbjct: 932 LNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 980
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 5/205 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI G+A+ G E A +FQEM+ +E EP+ T +VLS C + AL G+
Sbjct: 495 RDVISWNSMIAGHAQHGSYETAYKLFQEMQ-NEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H I T L + +GNA+INMY++CG + A VF+ L ++D++SW+ +I G A G
Sbjct: 554 IHGRI-TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQH 182
+A++LF M G P TF +++ C+ +D+G ++ +++ YE+ T
Sbjct: 613 EDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL--DTGV 670
Query: 183 YACVVDMYGRAGLLEEAEAFIREMP 207
++ Y ++G + +A +MP
Sbjct: 671 GNALISAYSKSGSMTDAREVFDKMP 695
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 26/233 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD++SW +I GYA R EA+ ++++M+ ++ +P T +++LSAC++ SA +
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ-SEGVKPGRVTFLHLLSACANSSAYAD 449
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R + + + NA++NMY +CG + A VF +D+ISW+++I+G A
Sbjct: 450 GKMIHEDI-LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
+G A +LF M + PD++TF +++S C HG + + GL L
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ +++MY R G L++A + S W A++ C
Sbjct: 569 LGNA------------LINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+SW ++I YA++GF ++A +F+EM+ PN+ T +++L+AC S + L
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELEN 146
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS I + V N++++MY KCGD+ A QVF ++ +D++S++T++ A
Sbjct: 147 GKKIHSQI-IKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
++ L LF M G+ PD VT+I L+ A + ++D+G + K
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 127/226 (56%), Gaps = 6/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDV+SWT MIGG A++G +A+ +F +M+ + P ++T ++L C+S + L
Sbjct: 593 LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQ-NEGFRPVKSTFSSILKVCTSSACLDE 651
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ V +YI ++ Y+L VGNA+I+ Y K G + A +VF+ + +D++SW+ +I+G
Sbjct: 652 GKKVIAYILNSGYELDTG--VGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGY 709
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G+ A++ M V P+ +F++L++ACS +++G + + ++
Sbjct: 710 AQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEI-VKRKLQGD 768
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ A ++ MY + G EA+ + IE W A++NA H
Sbjct: 769 VRVGAALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQH 813
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 146/278 (52%), Gaps = 9/278 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVS+ TM+G YA++ + +E + +F +M ++ P++ T +N+L A ++ S L G+
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKR 250
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ L+ VG A++ M V+CGDV A Q F A +D++ ++ +I+ LA +G
Sbjct: 251 IHK-LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHG 309
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A + + M +GV + T++++++ACS ++ G ++ +S Q
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIG 368
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR-QELVNKK 242
++ MY R G L +A MP + + W A++ R ++ + +R + + +
Sbjct: 369 NALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG--YARREDRGEAMRLYKQMQSE 425
Query: 243 GVSVG--TFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
GV G TF + + A + + D I ++I R G+K
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 9/278 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV + +I A+ G EA + M ++ N T +++L+ACS+ AL G+
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKALEAGKL 351
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS+IS D S++ +GNA+I+MY +CGD+ A ++F + +D+ISW+ +I+G A
Sbjct: 352 IHSHISE--DGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARR 409
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+A++L+ M GV P VTF+ L+SAC++ G ++ + + + + H
Sbjct: 410 EDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI--LRSGIKSNGH 467
Query: 183 YA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
A +++MY R G L EA+ S W +++ H + E + QE+ N+
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQARDVIS-WNSMIAGHAQHGSYETAYKLFQEMQNE 526
Query: 242 KGVSVG-TFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
+ TFA + + + E +I I GL+
Sbjct: 527 ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 30 QEMEKTKEAEPNE---ATLVNVLSACSSISALSFGQYVHSYISTRY---DLSVSNLVGNA 83
+++ T + P E AT V +L C+ L + +H+ + + D+ +SNL+
Sbjct: 12 EDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLL--- 68
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
INMYVKC V A QVF + +D+ISW+++IS A G ++A QLF M G P+
Sbjct: 69 -INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127
Query: 144 DVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+T+I++++AC ++ G I + + Y+ P+ Q+ ++ MYG+ G L A
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRA 182
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 179/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSWTT+I YA EA+ F+ M E PN L +L C S+ A
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKI 569
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ ++ + + +V NA+I+MY KCG + ++F+++ +D+ +W+T+I+G A
Sbjct: 570 GQQIHT-VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYA 627
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++++ M GV P++VTF+ L++ACSH GLVD+G FK+MS Y + P
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G ++ AE FI +MPIE + +W ALL AC+IH+N E+ ++L
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR 747
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN ++ W + ++R +++ G+ K+ GCSW ++ +
Sbjct: 748 IEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKM 799
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 125/269 (46%), Gaps = 23/269 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI--SAL 58
M +R+ +W+TMI + G + A++V+ E + K A L+ L+ C I + +
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVY-ERDPVKSIACRTA-LITGLAQCGRIDDARI 343
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
F Q + + NA+I Y++ G V A ++F+ + +++ ISW+ +I+G
Sbjct: 344 LFEQIPEPIVVS----------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NG +AL L + +G+ P + ++ ACS+ ++ G + S ++
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGT---QVHSLAVKVGC 450
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
Q +AC ++ MYG+ +E A M + + W + L A + +ND + D R
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA--LVQND-LLDEARN 506
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDA 265
N ++ + + +A A++ +A
Sbjct: 507 TFDNMLSRDDVSWTTIISAYAHAEQSNEA 535
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 52/257 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+++W +MI Y G + A ++ + + N T +LS + +
Sbjct: 60 MPRRDIIAWNSMISAYCHNGMPDAARDLYDAI-----SGGNMRTGAILLSGYGRLGRVLE 114
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-- 118
+ V + R + + NA+I+ YV+ GD+ +A ++F+ + +D+ SW+++++G
Sbjct: 115 ARRVFDGMLER-----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYC 169
Query: 119 ------------------------LAMNGCGR-----QALQLFSLMIINGVFPDDVTFIA 149
+ ++G GR +A +F M G+ PD F +
Sbjct: 170 HSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229
Query: 150 LISACSHGGLVD--QGLILFKAMSTVYE--IVPQTQHYACVVDMYGR-AGLLEEAEAFIR 204
+SA G +D + L + A+ T +E +V T ++++Y R +L+ A F
Sbjct: 230 ALSAVKGLGNLDVLESLRVL-ALKTGFERDVVIGT----AILNVYSRDTSVLDTAIKFFE 284
Query: 205 EMPIEAEWSVWGALLNA 221
M IE W ++ A
Sbjct: 285 SM-IERNEYTWSTMIAA 300
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 178/292 (60%), Gaps = 23/292 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SW TM+G E +P+ T+ +L AC+S+SAL
Sbjct: 275 MVVKDIISWNTMVG----------------------ELKPDSRTMACILPACASLSALER 312
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R S V NA++++YVKCG +G+A +F+M+ KD++SW+ +I+G
Sbjct: 313 GKEIHGYI-LRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 371
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A+ F+ M G+ PD+V+FI+++ ACSH GL++QG F M + I P+
Sbjct: 372 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 431
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L +A FI +PI + ++WGALL CRI+ + E+ + + + +
Sbjct: 432 EHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 491
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L++N +A A++WE+ ++R++I + GL+K GCSWIE+ +
Sbjct: 492 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRV 543
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 113/213 (53%), Gaps = 17/213 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E + ++++M + + AT+++VL C+ LS G+
Sbjct: 76 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCAKSGTLSLGKA 134
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS I + ++ ++ N +++MY KCGD+ A++VF + ++++SW+++I+G +
Sbjct: 135 VHSLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 192
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---- 178
G A+ L M GV D V +++ AC+ G +D G V++ +
Sbjct: 193 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNM 245
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
+ + C ++DMY + G +E A + M ++
Sbjct: 246 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK 278
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 38/222 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT+MI GY G+ + A+ + Q+MEK + + + + ++L AC+ +L
Sbjct: 174 MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK-EGVKLDVVAITSILHACARSGSLDN 232
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +++ + V NA+++MY KCG + A VF+ + KD+ISW+T++ L
Sbjct: 233 GKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELK 291
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYE 175
PD T ++ AC+ +++ G IL S+
Sbjct: 292 ---------------------PDSRTMACILPACASLSALERGKEIHGYILRNGYSS--- 327
Query: 176 IVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+H A +VD+Y + G+L A +P + W+V
Sbjct: 328 ----DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 365
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A ++F+ L +D+ISW+++ISG NG + L ++ M+ G+ D T I+++ C+
Sbjct: 66 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAK 125
Query: 157 GGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
G + G + A+ + +E + ++DMY + G L+ A +M
Sbjct: 126 SGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDGALRVFEKM 174
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 16/103 (15%)
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-- 141
+++ Y CGD+ +VF+ + K++ W+ ++S A G ++++ LF +M+ G+
Sbjct: 2 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61
Query: 142 --------------PDDVTFIALISACSHGGLVDQGLILFKAM 170
D +++ ++IS GL ++GL ++K M
Sbjct: 62 RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 104
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/285 (39%), Positives = 172/285 (60%), Gaps = 3/285 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V W MI YA+ G ++A+ +++ M T + P + T V V+ C+ +SAL G+ +
Sbjct: 202 DSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI 261
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ + +T +D ++ LV NA+++MY KCG + A+ VF+ + KD ISW+T+IS A +G
Sbjct: 262 HARVRATNFDANL--LVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHG 319
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
QAL L+ M + GV P +VTF+ L+SACSHGGLV GL F M + I P H+
Sbjct: 320 HSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHF 379
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C++D+ GR G L EAE ++ MPI+A W +LL AC+ H + + ++V++
Sbjct: 380 GCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVP 439
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A A RW+D KIR + G+KK G SWIE+
Sbjct: 440 WTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEI 484
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 21/290 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ V+W M+ Y G EA+ +F+EM E+++ A P++ + + ACS++ L G+
Sbjct: 95 KNSVTWNAMMTNYKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGR 154
Query: 63 YVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLA 120
+H + +L +VG A++NMY KCGD+ A +VF+ + + D + W+ +I+ A
Sbjct: 155 EIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYA 214
Query: 121 MNGCGRQALQLF-SLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
+G G+QAL L+ S+ + P TF+ +I C+ + QG I + +T ++
Sbjct: 215 QHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANL 274
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +V MYG+ G L+EA M ++ E S W ++++ H + + + QE+
Sbjct: 275 LVSN--ALVHMYGKCGCLDEALDVFHSMKLKDEIS-WNTIISSYAYHGHSDQALLLYQEM 331
Query: 239 VNKKGVS------VGTFALMSNTFAGAD------RWEDANKIRDEIRRMG 276
+ +GV VG + S+ AD R +D ++I+ + G
Sbjct: 332 -DLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFG 380
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 13/245 (5%)
Query: 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--LSFGQYVHSYIST 70
+ ++ G EA+ F+ M ++ E P+ T +L+A + + A + G+ +H Y
Sbjct: 1 MAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAIDQGREIHRYARI 59
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
L + +VG AVI+MY KCG + A F L +K+ ++W+ +++ ++G R+AL+
Sbjct: 60 S-GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALE 118
Query: 131 LFSLMI--INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHYACVV 187
LF M PD +F I ACS+ ++QG + + + E+ ++
Sbjct: 119 LFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALL 178
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQ-----ELVNK 241
+MY + G LEEA + +A+ W A++ A H R + D R +L K
Sbjct: 179 NMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 238
Query: 242 KGVSV 246
+G V
Sbjct: 239 QGTFV 243
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D +SW T+I YA G ++A+ ++QEM+ + +P E T V +LSACS
Sbjct: 300 MKLKDEISWNTIISSYAYHGHSDQALLLYQEMD-LQGVKPTEVTFVGLLSACSH------ 352
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
LV + + Y D I V + + +I L
Sbjct: 353 ----------------GGLVADGLDYFYRMQDDHRIKPSVPH---------FGCIIDLLG 387
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A + M I + V +++L+ AC G + +G+ +A V + VP T
Sbjct: 388 RGGRLAEAELVLKSMPIQA---NAVQWMSLLGACKTHGDLKRGV---RAADQVVDRVPWT 441
Query: 181 Q-HYACVVDMYGRAGLLEEAEAFIREM 206
Y + ++Y AG ++ E + M
Sbjct: 442 SGGYVLLSNIYAAAGRWKDVEKIRKIM 468
>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 182/296 (61%), Gaps = 9/296 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++ VSW T+I GY E CE+ + VF + + + PN++T +VL AC+SI++L
Sbjct: 408 IPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDK 466
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G VH I +YD+ VG A+ +MY KCGD+G + QVF + K+ ISW+ +I
Sbjct: 467 GMNVHGKIIKLGIQYDI----FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522
Query: 118 GLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
GLA +G ++L LF M + V P+++ ++++ ACSH GLVD+GL F +M VY I
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P+ +HY CVVD+ R+G L EAE FIR +P + E + W ALL+ C+ ++++++ + +
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+L + + L+SN +A A RW D + IR +R GLKK GCSW+EV +
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQV 698
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ +SW+ MI Y++ G+ EEA+ +F +M + + +PN + LSA +S+ ALS
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ T+ + +G+++I++Y KCG VF+++ K+++ W++++ G +
Sbjct: 335 GINIHGHV-TKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYS 393
Query: 121 MNG--------------------------------CGRQALQLFSLMIINGVFPDDVTFI 148
+NG C + L++F+ ++++G P+ TF
Sbjct: 394 INGRLEETEELFELIPEKNDVSWGTIIAGYLENEQC-EKVLEVFNTLLVSGQTPNKSTFS 452
Query: 149 ALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++ AC+ +D+G+ + + + Y+I T + DMY + G + ++
Sbjct: 453 SVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFER 508
Query: 206 MPIEAE--WSV 214
MP + E W+V
Sbjct: 509 MPEKNEISWTV 519
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSWT I G+ G EA+ +F + ++ PN+ T +V+ AC + G
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFGLG 203
Query: 62 QYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ + + LSVS N++I + ++ G++ +A +VF+ + +D++SW+ ++
Sbjct: 204 MSILGLVVKAGFEHYLSVS----NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDA 259
Query: 119 LAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYE- 175
G R+A ++F M P+ ++++ A+I+ S G ++ L LF M V E
Sbjct: 260 YVETGDLREARRIFDEM------PERNEISWSAMIARYSQSGYAEEALKLFSKM--VQEG 311
Query: 176 IVPQTQHYACVV 187
P +AC +
Sbjct: 312 FKPNISCFACTL 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
+A+I+ +K G V ++ F +++++SW+ ISG NG +AL+LF ++ +GV
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACV----VDMYGRAGLL 196
P+DVTF +++ AC G L D GL MS + +V +HY V + + R G +
Sbjct: 182 PNDVTFTSVVRAC--GELGDFGL----GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEI 235
Query: 197 EEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD--PIRQELVNKKGVSVGTFA 250
+ A M + + W A+L+A + +FD P R E+ +++
Sbjct: 236 DLARRVFDRME-KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI---------SWS 285
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283
M ++ + E+A K+ ++ + G K C
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 184/293 (62%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
M +D V+W +MI +++ G +EA+ +F++M E K N T+ + LSAC+S+ A+
Sbjct: 505 MSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKY---NNVTISSALSACASLPAI 561
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+G+ +H I + + +A+I+MY KCG++ +A++VF + K+ +SW+++IS
Sbjct: 562 YYGKEIHGVI-IKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISA 620
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++++ M G PD VTF+ALISAC+H GLV++GL LF+ M+ Y I P
Sbjct: 621 YGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAP 680
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +H+AC+VD+Y R+G L++A FI +MP + + +WGALL+ACR+HRN E+ D QEL
Sbjct: 681 RMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQEL 740
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ G + LMSN A A RW+ +K+R ++ + K G SW++VN S
Sbjct: 741 FKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNS 793
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 128/226 (56%), Gaps = 14/226 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV +T+I GY G E+A+ +F+ + + + +PN T+ +VL AC+SISAL GQ +
Sbjct: 408 DVVIGSTVISGYVLNGMSEKALQMFRYLLE-QCIKPNAVTVASVLPACASISALPLGQEI 466
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ R V +A+++MY KCG + ++ +F+ ++ KD ++W+++IS + NG
Sbjct: 467 HGYV-LRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGE 525
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQ 179
++AL LF M + G+ ++VT + +SAC+ + G G+I+ + +I +
Sbjct: 526 PQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKA--DIFAE 583
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DMY + G +E A MP + E S W ++++A H
Sbjct: 584 SA----LIDMYAKCGNMELALRVFEFMPDKNEVS-WNSIISAYGAH 624
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 123/222 (55%), Gaps = 6/222 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D+V+W MI G + G +EA+ +F +M ++ A P+ TLV++L A + ++ L
Sbjct: 303 LPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSG-ARPDSVTLVSLLPALTDLNGLKQ 361
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI R + + + +A++++Y KC DV A +++ D++ STVISG
Sbjct: 362 GKEVHGYI-IRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYV 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
+NG +ALQ+F ++ + P+ VT +++ AC+ + G I + YE
Sbjct: 421 LNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCY 480
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + ++DMY + G L+ + +M ++ E + W +++++
Sbjct: 481 VE--SALMDMYAKCGRLDLSHYIFSKMSLKDEVT-WNSMISS 519
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 90/163 (55%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD V W M+ GY + G AV +F+ M + EPN ATL LS C++ + L
Sbjct: 202 MPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM-RVSGCEPNFATLACFLSVCAAEADLLS 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS ++ + L V N +++MY KC + A ++F +L D+++W+ +ISG
Sbjct: 261 GVQLHS-LAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCV 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG +AL LF M+ +G PD VT ++L+ A + + QG
Sbjct: 320 QNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG 362
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 4/217 (1%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVH 65
+ W +I G+ G AV + +M A P+ TL V+ +C+++ A+S G+ VH
Sbjct: 105 LPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVH 164
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ L+ VG+A+I MY G + A F+ + ++D + W+ ++ G G
Sbjct: 165 R-TARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDV 223
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
A++LF M ++G P+ T +S C+ + G+ L +++ + +
Sbjct: 224 GGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQL-HSLAVKCGLEQEVAVANT 282
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
++ MY + L++A +P + + W +++ C
Sbjct: 283 LLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGC 318
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 177/286 (61%), Gaps = 1/286 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +DVVSW MI GY G ++A+ +F EM + P+E TL+++LSAC+ + L G
Sbjct: 232 PVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAG-VFPDEVTLLSLLSACADLGDLENG 290
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VH+ + +S L+GNA+I+MY KCG++ ++ VF + KD+ISW++VI G+A+
Sbjct: 291 KKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMAL 350
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G+++L LF +M + P+++TF+ ++ ACSH G +D+G F MS+ Y+I P +
Sbjct: 351 HGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIR 410
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
H C+VDM GRAGLL+EA FI M IE +W LL AC++H + E+ ++L +
Sbjct: 411 HCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSM 470
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + LMSN +A W+ A K+R + G+ K G S++E
Sbjct: 471 RKDHSGDYVLMSNLYASRGEWDGAEKVRKLMDDSGVTKIRGSSFVE 516
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 97/200 (48%), Gaps = 47/200 (23%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+++I GYA RG + A +F EM E LV+
Sbjct: 171 KGDVVAWSSLIAGYARRGDLKVARKLFNEMP--------ERDLVS--------------- 207
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
N +I YVK G++ A +F+ KD++SW+ +I+G +
Sbjct: 208 ------------------WNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVC 249
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---Q 179
G +QAL+LF+ M GVFPD+VT ++L+SAC+ G ++ G K + V EI
Sbjct: 250 GLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGK---KVHAKVMEISMGKLS 306
Query: 180 TQHYACVVDMYGRAGLLEEA 199
T ++DMY + G ++E+
Sbjct: 307 TLLGNALIDMYAKCGNIKES 326
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D + MI G ++ A+S++ EM + + + T VL AC+ + ++
Sbjct: 68 IPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHR-HFVKGDSYTFPFVLKACTRLFWVNT 126
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + R + +V N ++ + KCGD+ +A +F+ D+++WS++I+G A
Sbjct: 127 GSAVHGMV-LRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYA 185
Query: 121 MNGCGRQALQLFSLM 135
G + A +LF+ M
Sbjct: 186 RRGDLKVARKLFNEM 200
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 182/293 (62%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV++W +I G + G EEA+ +F+ + K + P T N+L+AC++++ L
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILFRLL-KRESVWPTHYTFGNLLNACANLADLQL 403
Query: 61 GQYVHSYI-----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G+ HS++ +Y VGN++I+MY+KCG V +VF + KD +SW+ +
Sbjct: 404 GRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAM 463
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG G +AL++F M+ +G PD VT I ++ ACSH GL+D+G F++M+ +
Sbjct: 464 IVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHG 523
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
++P HY C+VD+ GRAG LEEA+ I EM ++ + VWG+LL AC++HRN ++ + +
Sbjct: 524 LMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVV 583
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++L+ + G + L+SN +A W++ ++R +R+ G+ K+ GCSWIE+
Sbjct: 584 KKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEI 636
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 2/210 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D SW +MI G+ + G +EA+ F +M NE + + LSAC+ + L
Sbjct: 111 MPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL-VNEYSFGSALSACAGLQDLKL 169
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS + LS +G+A+++MY KCG V A VF+ + + +SW+++I+
Sbjct: 170 GSQIHSLVYRSNYLS-DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYE 228
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL++F MI GV PD+VT +++SAC+ + +G + + E
Sbjct: 229 QNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDL 288
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
++DMY + + EA MPI +
Sbjct: 289 ILGNALLDMYAKCNRINEARIIFDMMPIRS 318
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 102/170 (60%), Gaps = 5/170 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VSW ++I Y + G +EA+ +F EM K EP+E TL +V+SAC++ISA+
Sbjct: 212 MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCG-VEPDEVTLASVVSACATISAIKE 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ + + ++GNA+++MY KC + A +F+M+ + ++S ++++SG A
Sbjct: 271 GQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYA 330
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ A +FS M++ V +T+ ALI+ C+ G ++ LILF+ +
Sbjct: 331 KASKVKVARYMFSNMMVKDV----ITWNALIAGCTQNGENEEALILFRLL 376
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 14/144 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I + K G + A+ +F + D SW+++ISG +G +AL F+ M +G
Sbjct: 89 NSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFL 148
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGL 195
++ +F + +SAC+ GL K S ++ +V ++ + + V VDMY + G
Sbjct: 149 VNEYSFGSALSACA-------GLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGR 201
Query: 196 LEEAEAFIREMPIEAEWSVWGALL 219
+E A++ EM + + S W +L+
Sbjct: 202 VEYAQSVFDEMTVRSRVS-WNSLI 224
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 187/290 (64%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++GF EEA++ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 109 MPERDLISWTAMINGFVKKGFHEEALAWFREMQISG-VKPDYVAIIAALAACTNLGALSF 167
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A
Sbjct: 168 GLWIHRYVVSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFA 226
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G P+ VTF ++AC+H GLV++GL F++M Y I P+
Sbjct: 227 ANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRI 286
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL ACR N+ + + + + L
Sbjct: 287 EHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRTQGNNTVLAERVMKHLS 346
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 347 DLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKEPGFSSIEID 396
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I+ Y++ G V A+++F+ + +D+ISW+ +I+G G +AL F M I+GV
Sbjct: 87 NTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 146
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
PD V IA ++AC++ G + GL + + + + + + ++D+Y R G +E A
Sbjct: 147 PDYVAIIAALAACTNLGALSFGLWIHRYVVS-QDFKNNVRVSNSLIDLYCRCGCVEFARQ 205
Query: 202 FIREM 206
+M
Sbjct: 206 VFDKM 210
>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
Length = 822
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/288 (37%), Positives = 179/288 (62%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + ++SW ++I G EEA + +EM + EPN T+ +VL C+ ++ L
Sbjct: 472 MEAKSLISWNSIISGCCHMDRSEEASFLLREMLLSG-IEPNYVTIASVLPLCARVANLQH 530
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y++ R D L+ NA+++MY + G V A +VF+ML +D ++++++I+G
Sbjct: 531 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 590
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G+ AL+LF M + PD +T IA++SACSH GLV QG +LF+ M ++Y + P
Sbjct: 591 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHL 650
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+ D++GRAGLL +A+ IR MP + ++W L+ ACRIHRN E+ + ++L+
Sbjct: 651 EHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLE 710
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
K + G + L++N +A A W K+R +R +G++K GC+W++V
Sbjct: 711 MKPENPGYYVLIANMYAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDV 758
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 124/269 (46%), Gaps = 42/269 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I Y GFC++A+S +++M K K P+ T +VL AC L FG+ VH I
Sbjct: 243 WNLLISSYVRNGFCQKALSAYKQMVK-KGIRPDNFTYPSVLKACGEELDLGFGKEVHESI 301
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS----------- 117
+ + S +V NA+I+MY KCG VGIA +F+ + +D +SW+++IS
Sbjct: 302 NAS-RIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEA 360
Query: 118 ------------------------GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
G G + AL+L S M G D V I + A
Sbjct: 361 FELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGA 420
Query: 154 CSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
CSH G G + A+ + + V ++ ++ MY R L+ A + M ++
Sbjct: 421 CSHIGDAKLGKEIHSFAIRSCFGEVDTVKN--SLITMYSRCKDLKHAYLLFQLMEAKSLI 478
Query: 213 SVWGALLNA-CRIHRNDEMFDPIRQELVN 240
S W ++++ C + R++E +R+ L++
Sbjct: 479 S-WNSIISGCCHMDRSEEASFLLREMLLS 506
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 2/196 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W T+ GGY G + A+ + +M K + + L+ L ACS I G+ +
Sbjct: 375 NIIIWNTIAGGYLRTGNYKGALELLSQMRKXG-SHLDSVALIIGLGACSHIGDAKLGKEI 433
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS+ + R + V N++I MY +C D+ A +F ++ K +ISW+++ISG
Sbjct: 434 HSF-AIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDR 492
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A L M+++G+ P+ VT +++ C+ + G M+ + +
Sbjct: 493 SEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN 552
Query: 185 CVVDMYGRAGLLEEAE 200
+VDMY R+G + EA
Sbjct: 553 ALVDMYARSGKVLEAR 568
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ R V WT MI Y ++GF EE + +F +M + ++AT ++L A +SI++LS
Sbjct: 412 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA-SVIADQATFASLLRASASIASLSL 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS+I + + G+A++++Y KCG + A+Q F + ++++SW+ +IS A
Sbjct: 471 GKQLHSFI-IKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG L+ F M+++G+ PD V+F+ ++SACSH GLV++GL F +M+ +Y++ P+
Sbjct: 530 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA VVDM R+G EAE + EMPI+ + +W ++LNACRIH+N E+ +L N
Sbjct: 590 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 649
Query: 241 KKGV-SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + MSN +A A +WE+ +K+ +R G+KK SW+E+
Sbjct: 650 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 698
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VS+ +I GYA G + A +F+E++ T + + +LS S+
Sbjct: 311 MPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEM 369
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ I T D + LVGN++++MY KCG A +F L ++ + W+ +IS
Sbjct: 370 GRQIHAQTIVTTADSEI--LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 427
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTV 173
G + LQLF+ M V D TF +L I++ S G + +I MS V
Sbjct: 428 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 487
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + ++D+Y + G +++A +EMP + W A+++A
Sbjct: 488 FS-------GSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 527
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 6/222 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D VS+ MI GY++ G E+AV++F EM+ + +P E T VL A + +
Sbjct: 210 MPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSG-LKPTEFTFAAVLCANIGLDDIVL 268
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
GQ +HS+ I T + +V V NA+++ Y K V A ++F+ + +D +S++ +ISG
Sbjct: 269 GQQIHSFVIKTNFVWNV--FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 326
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G + A LF + F ++S S+ + G + A + V +
Sbjct: 327 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI-HAQTIVTTADSE 385
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + G EEAE + + W A+++A
Sbjct: 386 ILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVP-WTAMISA 426
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 108/214 (50%), Gaps = 17/214 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
M +R V+WT +IGGY++ +EA +F +M++ EP+ T V +LS C+
Sbjct: 109 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMGNQ 167
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
Q I YD + +VGN +++ Y K + +A Q+F + D +S++ +I+G
Sbjct: 168 ITQVQTQIIKLGYDSRL--IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGY 225
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ +G +A+ LF M +G+ P + TF A++ C++ GL D ++L + ++ V +
Sbjct: 226 SKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD--IVLGQ---QIHSFVIK 278
Query: 180 TQHY------ACVVDMYGRAGLLEEAEAFIREMP 207
T ++D Y + + +A EMP
Sbjct: 279 TNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP 312
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I+ YVK G++G A ++F+ + + ++W+ +I G + ++A +LF M G
Sbjct: 87 NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 146
Query: 142 PDDVTFIALISACSHGGLVDQ-GLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLE 197
PD VTF+ L+S C+ + +Q + + + Y+ IV T +VD Y ++ L+
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT-----LVDSYCKSNRLD 201
Query: 198 EAEAFIREMP 207
A +EMP
Sbjct: 202 LACQLFKEMP 211
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/285 (40%), Positives = 181/285 (63%), Gaps = 3/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V WT M+ GYA+ A+SVF++M A + ++++L AC + L
Sbjct: 171 MPERDAVLWTAMLAGYAQHEEPMLALSVFRQMVSAGVAL-DGVVMISLLLACGQLGWLKH 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I TR L++ +GNA++ YVKC +G + +F+ + +D+ISWS++I G
Sbjct: 230 GKSVHGWI-TRRCLALGLNLGNALVYFYVKCAALGYSYNLFDKMPERDVISWSSIILGYG 288
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G AL LF M + GV P+DVTF+ +SAC+H G+V++ F+ M Y + P+
Sbjct: 289 LSGNVDIALDLFDRMRVAGVKPNDVTFLGALSACTHTGMVERAHTYFEMMKE-YGVAPEL 347
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD GRAG+LE+AE FI EMP+EA+ +V GALL CR+H N E+ + + ++L+
Sbjct: 348 KHYACMVDCLGRAGMLEDAERFIEEMPVEADGAVLGALLGGCRVHGNAEVGERVAKKLMG 407
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
+ + +++N +AGA R+EDA K+R +++ L K GCS+
Sbjct: 408 LEPEKASNYVMLANIYAGAGRFEDAEKVRQLMKQRKLSKVPGCSF 452
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++ SW +IG ++ +++ +F +M + P+ TL VL AC++ ++
Sbjct: 70 MPHRNIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQP-PDVFTLPLVLRACAASGSVKL 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + + S V +A++ MYV G V A +F+ + +D + W+ +++G A
Sbjct: 129 GVSVHG-LCVEMGMEKSLFVASALVFMYVTFGKVLDARVLFDEMPERDAVLWTAMLAGYA 187
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ AL +F M+ GV D V I+L+ AC G + G
Sbjct: 188 QHEEPMLALSVFRQMVSAGVALDGVVMISLLLACGQLGWLKHG 230
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+ SWT +I GYA+ E+AV F++M++ + +PNE TL + LS CS ++ L G+
Sbjct: 317 RDIFSWTVIISGYAQTDQAEKAVKYFRQMQR-EGIKPNEYTLASCLSGCSHMATLENGRQ 375
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ ++ + VG+A++++Y KCG + A +F L +D++SW+T+ISG + +G
Sbjct: 376 LHA-VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHG 434
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL+ F +M+ G+ PD+ TFI ++SACS GLV++G F +MS +Y I P +HY
Sbjct: 435 QGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHY 494
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAG E + FI EM + +W +L AC++H N + + ++L +
Sbjct: 495 ACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEP 554
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++ L+SN FA RW+D IR + G+KK+ GCSW+EV+ +
Sbjct: 555 MMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQV 603
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 22/238 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D+VSW ++ G+ + C +F +M + +PN T ++VL +CSS+ F
Sbjct: 213 MTNPDLVSWNALLSGFYDSQTCGRGPRIFYQM-LLEGFKPNMFTFISVLRSCSSLLDPEF 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---DVGIAIQVFNMLAYKDMISWSTVIS 117
G+ VH++I + + VG A+++MY K D G+A F+ L +D+ SW+ +IS
Sbjct: 272 GKQVHAHI-IKNSSDDDDFVGTALVDMYAKARCLEDAGVA---FDRLVNRDIFSWTVIIS 327
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G A +A++ F M G+ P++ T + +S CSH ++ G ++ +
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENG-------RQLHAVA 380
Query: 178 PQTQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ H+ + +VD+YG+ G +E AEA + + I + W +++ H E
Sbjct: 381 VKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL-ISRDIVSWNTIISGYSQHGQGE 437
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 98/163 (60%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW ++ GYA+ G ++ + +F +M++ E + ++ TL VL C++ +L
Sbjct: 11 MPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKEC-ETKFSKFTLSTVLKGCANTGSLRE 69
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ R + +G ++++MY KCG V A++VF + D+++WS +I+GL
Sbjct: 70 GKVLHA-LALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLD 128
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G G++A +LF LM G P+ T +L+S ++ G + G
Sbjct: 129 QQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 17/202 (8%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+W+ MI G ++G +EA +F M + K A PN+ TL +++S +++ L +GQ +
Sbjct: 116 DVVAWSAMITGLDQQGHGQEAAELFHLMRR-KGARPNQFTLSSLVSTATNMGDLRYGQSI 174
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL-AMNG 123
H I +Y NLV N +I MY+K V +VF + D++SW+ ++SG
Sbjct: 175 HGCI-CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQT 233
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSH------GGLVDQGLILFKAMSTVYEIV 177
CGR ++F M++ G P+ TFI+++ +CS G V +I K S + V
Sbjct: 234 CGR-GPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHII--KNSSDDDDFV 290
Query: 178 PQTQHYACVVDMYGRAGLLEEA 199
+VDMY +A LE+A
Sbjct: 291 GTA-----LVDMYAKARCLEDA 307
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+A ++F + K+ +SW+ +++G A G G++ L+LF M T ++ C+
Sbjct: 3 LAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCA 62
Query: 156 HGGLVDQGLILFK-AMSTVYEIVPQTQHYAC-VVDMYGRAGLLEEA 199
+ G + +G +L A+ + EI + C +VDMY + G + +A
Sbjct: 63 NTGSLREGKVLHALALRSGCEI---DEFLGCSLVDMYSKCGTVYDA 105
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 182/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD V+W+ MI GY G EA+ +F EM + EATLV+VL+AC+ I L
Sbjct: 1411 MPQRDHVAWSAMIAGYMHVGRSREALMLFDEM-LSAGTTVGEATLVSVLTACAQIGTLDR 1469
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH Y+ +R + +S +G A+++MY KCG V A++VF +A +++ +W++ +SGLA
Sbjct: 1470 GKWVHWYVRSR-GMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLA 1528
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + LQLF M G+ P+ V+F+A++ CS GLVD+G F +M Y + P
Sbjct: 1529 MNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK-YGVDPWP 1587
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A +FI +MP+E VWGALLNA RIH + ++ +L+
Sbjct: 1588 EHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLA 1647
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + +SN +A + W+ +++R ++ G+KK G S IEV+
Sbjct: 1648 IESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVD 1696
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
A++ GDV A +F+ + +D ++WS +I+G G R+AL LF M+ G
Sbjct: 1389 TAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTT 1448
Query: 142 PDDVTFIALISACSHGGLVDQG 163
+ T +++++AC+ G +D+G
Sbjct: 1449 VGEATLVSVLTACAQIGTLDRG 1470
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 177/284 (62%), Gaps = 1/284 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R +VSW T+I A+ EA+ +FQ+ME+ +P+E T+V +L CS + AL
Sbjct: 199 MSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHG-FKPDEVTVVTMLPVCSRLGALEV 257
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +HSY S++ +L VGN++I+ Y KCG++ A +F + K ++SW+T+I G A
Sbjct: 258 GQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFA 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G A+ LF M + P+D TF+A+++AC H GL+++G LF +M+ YEI P+
Sbjct: 318 LNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKL 377
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+ C+VD+ GR G +EEA I+ MP++ ++WGA+L ACR H N ++ + +EL++
Sbjct: 378 EHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKLAEMAVKELIS 437
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ + G + L+SN A RWE+ +R +R +KK G S
Sbjct: 438 LEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR-------YDLS 75
+++ +F M K P++ T +L +C+++ S GQ V S + R +
Sbjct: 89 HQSLLLFSSM-KNHRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIG 147
Query: 76 VSNL-----------------------VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW 112
V L V N +I + K G+V + +F ++ + ++SW
Sbjct: 148 VVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSW 207
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
+T+IS LA N +AL+LF M +G PD+VT + ++ CS G ++ G + S+
Sbjct: 208 NTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASS 267
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+V T ++D Y + G +E+A ++M ++
Sbjct: 268 KGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKS 305
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 182/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSWTT++ Y++ EEA++ F M + A PN+ T +VL +C+S+ L +
Sbjct: 487 MEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA-PNQFTFSSVLISCASLCFLEY 545
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + L + +A+I+MY KCG + A +VF+ ++ D++SW+ +ISG A
Sbjct: 546 GRQVHGLL-CKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 604
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ALQLF M ++G+ + VT + ++ ACSHGG+V++GL F+ M Y +VP+
Sbjct: 605 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEM 664
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR G L++A FIR+MP+E VW LL CR+H N E+ + +++++
Sbjct: 665 EHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILS 724
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ T+ L+SNT+ +ED +R+ ++ G+KK+ G SWI V +
Sbjct: 725 IRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRV 776
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 5/202 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SWT MI G E G + F EM + P++ ++ +C + +L
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSG-ILPDKFAYSAIIQSCIGLDSLEL 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ I R + V +++NMY K G + + VFNM+ + +SW+ +ISG
Sbjct: 240 GKMVHAQIVMR-GFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCT 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQ 179
NG +A LF M P+ T +++ A G LVD + + ++ I
Sbjct: 299 SNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAV--GKLVDVNMGKEVQNCASELGIEGN 356
Query: 180 TQHYACVVDMYGRAGLLEEAEA 201
++DMY + G L +A +
Sbjct: 357 VLVGTALIDMYSKCGSLHDARS 378
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + + VSW MI G G EA +F M K PN TLV+V A + ++
Sbjct: 282 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM-KNGACTPNMYTLVSVSKAVGKLVDVNM 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISG 118
G+ V + ++ + + LVG A+I+MY KCG + A VF N + W+ +ISG
Sbjct: 341 GKEVQN-CASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISG 399
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-----GLVDQGLILFKAMSTV 173
+ +GC ++AL+L+ M NG+ D T+ ++ +A + G V G++L + +
Sbjct: 400 YSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLM 459
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V + D Y + G LE+ M E + W L+ A
Sbjct: 460 VVSVNNA-----IADAYSKCGFLEDVRKVFDRME-ERDIVSWTTLVTA 501
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Query: 45 LVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
L++VL C+ ++ + VH + + ++ ++ N ++Y KC + A VF+
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 180
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC--------- 154
+ +++ SW+ +I G +G + F M+ +G+ PD + A+I +C
Sbjct: 181 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 240
Query: 155 --SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H +V +G +ST +++MY + G +E++ ++ M E
Sbjct: 241 KMVHAQIVMRGFATHIFVST------------SLLNMYAKLGSIEDS-YWVFNMMTEHNQ 287
Query: 213 SVWGALLNAC 222
W A+++ C
Sbjct: 288 VSWNAMISGC 297
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 172/293 (58%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V++W +I YA+ G EEA+ +F ++ K P T NVL+AC +I+ L
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACGNIAVLQL 403
Query: 61 GQYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
GQ H ++ R+D + VGN++++MY+K G + +VF +A +D +SW+ +
Sbjct: 404 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 463
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG + AL LF M+ + PD VT I ++SAC H GLVD+G F M+ +
Sbjct: 464 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHG 523
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
I P HY C+VD+ GRAG L+EAE I++MP E + +W +LL ACR+H+N E+ +
Sbjct: 524 ITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTA 583
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L + G + L+SN +A +W D ++R ++ G+ K+ GCSWIE+
Sbjct: 584 GRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 636
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 124/255 (48%), Gaps = 38/255 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW ++I Y + G EA+ +F EM T P+E TL +V+SAC+ ++A
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFF-PDEVTLSSVMSACAGLAAERE 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---------------------------- 92
G+ VH+++ R L ++ NA+++MY KCG
Sbjct: 271 GRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYA 330
Query: 93 ---DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+V A VF+ + K++I+W+ +I+ A NG +A++LF + + ++P T+
Sbjct: 331 KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 390
Query: 150 LISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIR 204
+++AC + ++ Q + ++ P++ + +VDMY + G +++
Sbjct: 391 VLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFE 450
Query: 205 EMPIEAEWSVWGALL 219
M S W A++
Sbjct: 451 RMAARDNVS-WNAMI 464
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 99/209 (47%), Gaps = 4/209 (1%)
Query: 1 MPKRDVVSWTTMIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+P D S+ ++ A RG +A+ M + N + + LSAC++ L
Sbjct: 109 IPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMH-ADDFVLNAYSFASALSACAAEKDL 167
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ VH ++ R + +G A+++MY KC A +VF+ + ++++SW+++I+
Sbjct: 168 RTGEQVHGLVA-RSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITC 226
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +AL LF M+ G FPD+VT +++SAC+ +G + M +
Sbjct: 227 YEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRD 286
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+VDMY + G EA MP
Sbjct: 287 DMVLNNALVDMYAKCGRTWEARCIFDSMP 315
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 180/288 (62%), Gaps = 4/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++V+SWT++I G EA+ FQ+M +PN TLV+VLSAC+ I ALS
Sbjct: 458 IPNKNVISWTSIILGLRLNYRSFEALFFFQQM--ILSLKPNSVTLVSVLSACARIGALSC 515
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++ + R L + NA+++MYV+CG + A FN KD+ SW+ +++G A
Sbjct: 516 GKEIHAH-ALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSCE-KDVASWNILLTGYA 573
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G G A++LF MI + V PD++TF +L+ ACS G+V GL F++M + I P
Sbjct: 574 QQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA VVD+ GRAG LE+A FI++MPI+ + ++WGALLNACRI++N E+ + Q +
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFE 693
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
SVG + L+ N +A + +W++ ++R +R L GCSW+EV
Sbjct: 694 MDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEV 741
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 143/259 (55%), Gaps = 15/259 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +SW MI GY E C E + +F M + +P+ T+ +V+SAC ++
Sbjct: 256 MPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFF-VDPDLMTMTSVISACEALGDERL 314
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH Y I T + VS V N++I M+ G A VF+ + +KD++SW+ +ISG
Sbjct: 315 GREVHGYVIKTGFVAEVS--VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS----TVYE 175
NG +A++ +++M GV PD++T +++SAC+ GL+D+G++L + T Y
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-HRNDEMFDPI 234
IV + ++DMY + +++A +P + S W +++ R+ +R+ E
Sbjct: 433 IVANS-----LIDMYSKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFF 486
Query: 235 RQELVNKKGVSVGTFALMS 253
+Q +++ K SV +++S
Sbjct: 487 QQMILSLKPNSVTLVSVLS 505
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+ SW ++GGYA+ G+ +EA++++ M P+ T VL C + L+
Sbjct: 155 MAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLAR 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ RY V NA+I MYVKCGD+ A VF+ + +D ISW+ +ISG
Sbjct: 214 GREVHLHV-IRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYF 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
N + L+LF +M V PD +T ++ISAC HG ++ G
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGF----- 327
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
V + ++ M+ G +EAE +M + + W A+++
Sbjct: 328 -------VAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK-DLVSWTAMISG 371
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 10/146 (6%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
+G E+A+ M++ + E T + +L C A S G VHSY+S +V+
Sbjct: 72 KGDLEKALIHLDSMQEL-QVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK----TVTR 126
Query: 79 L---VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
L +GNA+++M+V+ GD+ A VF +A +D+ SW+ ++ G A G +AL L+ M
Sbjct: 127 LGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRM 186
Query: 136 IINGVFPDDVTFIALISACSHGGLVD 161
+ G+ PD TF ++ C GGL D
Sbjct: 187 LWVGIRPDVYTFPCVLRTC--GGLPD 210
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ R V WT MI Y ++GF EE + +F +M + ++AT ++L A +SI++LS
Sbjct: 372 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA-SVIADQATFASLLRASASIASLSL 430
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS+I + + G+A++++Y KCG + A+Q F + ++++SW+ +IS A
Sbjct: 431 GKQLHSFI-IKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYA 489
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG L+ F M+++G+ PD V+F+ ++SACSH GLV++GL F +M+ +Y++ P+
Sbjct: 490 QNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRR 549
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA VVDM R+G EAE + EMPI+ + +W ++LNACRIH+N E+ +L N
Sbjct: 550 EHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFN 609
Query: 241 KKGV-SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + MSN +A A +WE+ +K+ +R G+KK SW+E+
Sbjct: 610 MEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEI 658
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D VS+ +I GYA G + A +F+E++ T + + +LS S+
Sbjct: 271 MPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTA-FDRKQFPFATMLSIASNTLDWEM 329
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+ I T D + LVGN++++MY KCG A +F L ++ + W+ +IS
Sbjct: 330 GRQIHAQTIVTTADSEI--LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAY 387
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTV 173
G + LQLF+ M V D TF +L I++ S G + +I MS V
Sbjct: 388 VQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV 447
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + ++D+Y + G +++A +EMP + W A+++A
Sbjct: 448 FS-------GSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISA 487
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
Query: 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY-IS 69
T++ Y + + A +F+EM E + T VL A + + GQ +HS+ I
Sbjct: 184 TLVDSYCKSNRLDLACQLFKEM-----PEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
T + +V V NA+++ Y K V A ++F+ + +D +S++ +ISG A +G + A
Sbjct: 239 TNFVWNV--FVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAF 296
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189
LF + F ++S S+ + G + A + V + +VDM
Sbjct: 297 DLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI-HAQTIVTTADSEILVGNSLVDM 355
Query: 190 YGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Y + G EEAE + + W A+++A
Sbjct: 356 YAKCGKFEEAEMIFTNLTHRSAVP-WTAMISA 386
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I+ YVK G++G A ++F+ + + ++W+ +I G + ++A +LF M G
Sbjct: 82 NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141
Query: 142 PDDVTFIALISACSHGGLVDQ-GLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLE 197
PD VTF+ L+S C+ + +Q + + + Y+ IV T +VD Y ++ L+
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT-----LVDSYCKSNRLD 196
Query: 198 EAEAFIREMP 207
A +EMP
Sbjct: 197 LACQLFKEMP 206
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
M +R V+WT +IGGY++ +EA +F +M++ EP+ T V +LS C+
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG-TEPDYVTFVTLLSGCNGHEMGNQ 162
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
Q I YD + +VGN +++ Y K + +A Q+F + D +++ V+
Sbjct: 163 ITQVQTQIIKLGYDSRL--IVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 179/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSWTT+I YA EA+ F+ M E PN L +L C S+ A
Sbjct: 511 MLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNSPILTILLGVCGSLGASKI 569
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ ++ + + +V NA+I+MY KCG + ++F+++ +D+ +W+T+I+G A
Sbjct: 570 GQQIHT-VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYA 627
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A++++ M GV P++VTF+ L++ACSH GLVD+G FK+MS Y + P
Sbjct: 628 QHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLP 687
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G ++ AE FI +MPIE + +W ALL AC+IH+N E+ ++L
Sbjct: 688 EHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFR 747
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN ++ W + ++R +++ G+ K+ GCSW ++ +
Sbjct: 748 IEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKM 799
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 125/269 (46%), Gaps = 23/269 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI--SAL 58
M +R+ +W+TMI + G + A++V+ E + K A L+ L+ C I + +
Sbjct: 286 MIERNEYTWSTMIAALSHGGRIDAAIAVY-ERDPVKSIACRTA-LITGLAQCGRIDDARI 343
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
F Q + + NA+I Y++ G V A ++F+ + +++ ISW+ +I+G
Sbjct: 344 LFEQIPEPIVVS----------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAG 393
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A NG +AL L + +G+ P + ++ ACS+ ++ G + S ++
Sbjct: 394 YAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGT---QVHSLAVKVGC 450
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
Q +AC ++ MYG+ +E A M + + W + L A + +ND + D R
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRM-VTKDIVSWNSFLAA--LVQND-LLDEARN 506
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDA 265
N ++ + + +A A++ +A
Sbjct: 507 TFDNMLSRDDVSWTTIISAYAHAEQSNEA 535
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 114/257 (44%), Gaps = 52/257 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+++W +MI Y G + A ++ + + N T +LS + +
Sbjct: 60 MPRRDIIAWNSMISAYCHNGMPDAARDLYDAI-----SGGNMRTGAILLSGYGRLGRVLE 114
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG-- 118
+ V + R + + NA+I+ YV+ GD+ +A ++F+ + +D+ SW+++++G
Sbjct: 115 ARRVFDGMLER-----NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYC 169
Query: 119 ------------------------LAMNGCGR-----QALQLFSLMIINGVFPDDVTFIA 149
+ ++G GR +A +F M G+ PD F +
Sbjct: 170 HSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFAS 229
Query: 150 LISACSHGGLVD--QGLILFKAMSTVYE--IVPQTQHYACVVDMYGR-AGLLEEAEAFIR 204
+SA G +D + L + A+ T +E +V T ++++Y R +L+ A F
Sbjct: 230 ALSAVKGLGNLDVLESLRVL-ALKTGFERDVVIGT----AILNVYSRDTSVLDTAIKFFE 284
Query: 205 EMPIEAEWSVWGALLNA 221
M IE W ++ A
Sbjct: 285 SM-IERNEYTWSTMIAA 300
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 182/300 (60%), Gaps = 9/300 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA------EPNEATLVNVLSACSS 54
MP+RDV SW +I GY + G EA+S+F+ M + PN+ T V LSAC
Sbjct: 248 MPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGH 307
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
L G+++H Y+ R L + + V NA+++MY KCG + A +VF+ + + SW++
Sbjct: 308 TGMLRLGKWIHGYV-YRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNS 366
Query: 115 VISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
+I+ LA++G + A+ +F M+ +GV PD+VTFI L++AC+HGGLV++G + F+ M+
Sbjct: 367 MINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQ 426
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFD 232
Y I PQ +HY C+VD+ GRAG EEA +R M IE + +WG+LLN C+IH + ++ +
Sbjct: 427 NYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAE 486
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++L++ + G +++N + +W++ K+R ++ K GCSWIE++ +
Sbjct: 487 FSIKKLIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQV 546
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 44/261 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +T MI YA A+ +++ M + + PN +VL +C+ + + V
Sbjct: 118 NVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQVVGPGSARMV 177
Query: 65 H--------------------SYISTRYDLSVSNLVGN-----------AVINMYVKCGD 93
H +Y+ D+ + L+ + A+I+ Y + G
Sbjct: 178 HCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTERNVVSWTAMISGYTRLGQ 237
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII-------NGVFPDDVT 146
+G A+ +F + +D+ SW+ +I+G NG +AL LF MI G P+ VT
Sbjct: 238 IGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVT 297
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIR 204
+ +SAC H G++ G + VY + +VDMYG+ G L+EA +
Sbjct: 298 AVCSLSACGHTGMLRLGKWIH---GYVYRNGLGLDSFVSNALVDMYGKCGCLKEARR-VF 353
Query: 205 EMPIEAEWSVWGALLNACRIH 225
+ +E + W +++N +H
Sbjct: 354 DRTLERSLTSWNSMINCLALH 374
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 174/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW T+I G+ G+ +EAV +F EM P+EAT+V +SA I L
Sbjct: 152 MPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGI 211
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y+ R + S+ +G A+I+MY +CG +G A F + K++ W+++I+G A
Sbjct: 212 GKSAHGYV-LRREFSLDGALGVALISMYTRCGSMGAAHSCFLSVTTKNVEHWTSLIAGFA 270
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +AL+LF+ M G+ P+ VTF+A+++AC+HGGLV +G F M ++ I P
Sbjct: 271 AHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGFKYFDLMRSM-GIRPMI 329
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG L+EA +P + + +W +LL AC H + EM + +L +
Sbjct: 330 QHYGCLVDLLGRAGFLKEAFNLASNLPEDPGFVIWSSLLAACHSHGDVEMAELTASKLAD 389
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K ++ L+SNT+A A +WED + R + G+ KK G SWIEV+
Sbjct: 390 AKPSHGSSYVLLSNTYARAKQWEDLRRTRRRMEEHGVTKKPGLSWIEVD 438
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 25/216 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN-GV 140
N +++ V+ GD+ A +VF + ++++SW+T+I+G NG ++A+ LF M + G+
Sbjct: 130 NVLLDALVRDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGL 189
Query: 141 FPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
PD+ T + +SA GL+ G +L + S + ++ MY R G
Sbjct: 190 APDEATMVGFVSAVRDIGLLGIGKSAHGYVLRREFSLDGAL------GVALISMYTRCGS 243
Query: 196 LEEAEA-FIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVSVGTFA 250
+ A + F+ E W +L+ H E +F +R+ + GV TF
Sbjct: 244 MGAAHSCFLSVTTKNVEH--WTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGV---TFV 298
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLK---KKTGC 283
+ N + K D +R MG++ + GC
Sbjct: 299 AVLNACNHGGLVSEGFKYFDLMRSMGIRPMIQHYGC 334
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI-SALSFGQYVHSY-ISTRYDLSVSNL- 79
+ ++ F+ + A L+ L+AC+ + +A++ + +H+ + + +VS++
Sbjct: 37 DASLCAFRAHHRAGRALHANPALIPALAACARLPAAVAEAEQIHALLVKSGVPRTVSDVQ 96
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
V ++I Y + G V A +VF+ + + +++W+ ++ L +G A ++F M
Sbjct: 97 VSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALVRDGDLDAAWEVFVEMPQRN 156
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH---YACVVDMYGRAGLL 196
V V++ +I+ + G + + LF M+ Y + P + V G G+
Sbjct: 157 V----VSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMVGFVSAVRDIGLLGIG 212
Query: 197 EEAEAFIREMPIEAEWSVWGAL 218
+ A ++ + E+S+ GAL
Sbjct: 213 KSAHGYV----LRREFSLDGAL 230
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 113/297 (38%), Positives = 179/297 (60%), Gaps = 7/297 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW +I GY + G EEA+ +F+ + K + P T N+LSAC++++ L
Sbjct: 341 MTQRNVVSWNALIAGYTQNGENEEALRLFRLL-KRESIWPTHYTFGNLLSACANLADLLL 399
Query: 61 GQYVHSYISTR-YDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G+ H+++ + ++ VGN++I+MY+KCG + +VF + +D +SW+ +
Sbjct: 400 GRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAI 459
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG G +ALQ+F M++ G PD VT I ++ ACSH GLV++G F +M +
Sbjct: 460 IVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HG 518
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
++P HY C+VD+ GRAG L EA+ I MP+ + VWG+LL AC++H N EM
Sbjct: 519 LIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAA 578
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++L+ + G + L+SN +A RW D ++R +R+ G+ K+ GCSWIEV +
Sbjct: 579 EKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRV 635
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 129/243 (53%), Gaps = 7/243 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D SW +M+ G+A+ EE++ F +M + ++ NE + + LSAC+ + L+
Sbjct: 107 MPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHR-EDFLLNEYSFGSALSACAGLMDLNM 165
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH+ +S +RY V +G+A+I+MY KCG V A +VF+ + +++++W+++I+
Sbjct: 166 GTQVHALVSKSRYSTDV--YMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCY 223
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL++F M+ +G+ PD+VT +++SAC+ + +GL + + +
Sbjct: 224 EQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDD 283
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHRNDEMFDPIRQ 236
+VDMY + + EA M I +E S+ A + MF + Q
Sbjct: 284 LVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343
Query: 237 ELV 239
V
Sbjct: 344 RNV 346
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 124/261 (47%), Gaps = 50/261 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R++V+W ++I Y + G EA+ VF M + EP+E TL +V+SAC+S+ AL
Sbjct: 208 MIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSG-LEPDEVTLASVVSACASLCALKE 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--------------- 105
G +H+ + ++GNA+++MY KC V A +VF+ ++
Sbjct: 267 GLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYA 326
Query: 106 ----------------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
++++SW+ +I+G NG +AL+LF L+ ++P TF
Sbjct: 327 RAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGN 386
Query: 150 LISAC-----------SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
L+SAC +H ++ QG F++ + V + ++DMY + G +E+
Sbjct: 387 LLSACANLADLLLGRQAHTHVLKQGF-EFQSGAESDIFVGNS-----LIDMYMKCGSIED 440
Query: 199 AEAFIREMPIEAEWSVWGALL 219
+M E + W A++
Sbjct: 441 GSRVFEKMK-ERDCVSWNAII 460
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I++ K G + A ++F + D SW++++SG A + ++L+ F M
Sbjct: 85 NSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFL 144
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGL 195
++ +F + +SAC+ GL+ + V+ +V ++++ + ++DMY + G
Sbjct: 145 LNEYSFGSALSACA-------GLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGS 197
Query: 196 LEEAEAFIREMPIEAEWSVWGALL 219
+ AE M IE W +L+
Sbjct: 198 VACAEEVFSGM-IERNLVTWNSLI 220
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 174/288 (60%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++VVSWTTM+ G++ G E+A+S+F +M + + PN T+V+ LSAC+ I L
Sbjct: 307 MPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLE-EGVRPNAFTIVSALSACAKIGGLEA 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H YI L ++ +G A+++MY KCG++ A +VF K + +W+ +I G A
Sbjct: 366 GLRIHKYIKDN-GLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWA 424
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G QA+ F M+ G+ PD+V F+AL++AC H G VD GL F +M Y I P
Sbjct: 425 IHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSM 484
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VDM GR+G L+EA FI MP+ ++ +WGAL ACR H+ +M +L+
Sbjct: 485 KHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLK 544
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + +SN +A +WEDA ++R ++ G+ K +G S IEV
Sbjct: 545 LEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEV 592
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 27/154 (17%)
Query: 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII 137
N+ + +I+ + K GD+ A+++F+ + K+++SW+T++ G + NG +AL +FS M+
Sbjct: 281 NVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLE 340
Query: 138 NGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
GV P+ T ++ +SAC+ H + D GL L +A+ T +
Sbjct: 341 EGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTA------------L 388
Query: 187 VDMYGRAGLLEEAEAFIREMPIEA--EWSV--WG 216
VDMY + G +E A E ++ W+V WG
Sbjct: 389 VDMYAKCGNIESASEVFGETEQKSIRTWTVMIWG 422
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P EA ++++ +I L +H+ I ++LS S+L+ +I+ + ++
Sbjct: 79 PTEAHFISLIHGSKTILQL---HQIHAQIII-HNLSSSSLITTQLISSSSLRKSINHSLA 134
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
VFN K++ +++ +I GL N A+ F LM+ +G+ PD +T+
Sbjct: 135 VFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTY 182
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 114/287 (39%), Positives = 172/287 (59%), Gaps = 3/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI G+A+ G E A +FQEM+ +E EP+ T +VLS C + AL G+
Sbjct: 495 RDVISWNSMIAGHAQHGSYETAYKLFQEMQ-NEELEPDNITFASVLSGCKNPEALELGKQ 553
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H I T L + +GNA+INMY++CG + A VF+ L ++D++SW+ +I G A G
Sbjct: 554 IHGRI-TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQG 612
Query: 124 CGRQALQLFSLMIINGVFPDD-VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+A++LF M G P D TF +++SAC+H GLV +G +F +M + Y ++P +H
Sbjct: 613 EDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEH 672
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+V + GRA +EAE I +MP + +VW LL ACRIH N + + +
Sbjct: 673 YGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLN 732
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + L+SN +A A RW+D KIR + G++K+ G SWIEV+
Sbjct: 733 ARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 779
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 26/233 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD++SW +I GYA R EA+ ++++M+ ++ +P T +++LSAC++ SA +
Sbjct: 391 MPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ-SEGVKPGRVTFLHLLSACANSSAYAD 449
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R + + + NA++NMY +CG + A VF +D+ISW+++I+G A
Sbjct: 450 GKMIHEDI-LRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHA 508
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
+G A +LF M + PD++TF +++S C HG + + GL L
Sbjct: 509 QHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVN 568
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ +++MY R G L++A + S W A++ C
Sbjct: 569 LGNA------------LINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGC 608
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+SW ++I YA++GF ++A +F+EM+ PN+ T +++L+AC S + L
Sbjct: 88 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELEN 146
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS I + V N++++MY KCGD+ A QVF ++ +D++S++T++ A
Sbjct: 147 GKKIHSQI-IKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168
++ L LF M G+ PD VT+I L+ A + ++D+G + K
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK 253
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 147/278 (52%), Gaps = 9/278 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVS+ TM+G YA++ + +E + +F +M ++ P++ T +N+L A ++ S L G+
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQM-SSEGISPDKVTYINLLDAFTTPSMLDEGKR 250
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ L+ VG A++ M V+CGDV A Q F +A +D++ ++ +I+ LA +G
Sbjct: 251 IHK-LTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHG 309
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A + + M +GV + T++++++ACS ++ G ++ +S Q
Sbjct: 310 HNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH-SSDVQIG 368
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR-QELVNKK 242
++ MY R G L +A MP + + W A++ R ++ + +R + + +
Sbjct: 369 NALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAG--YARREDRGEAMRLYKQMQSE 425
Query: 243 GVSVG--TFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
GV G TF + + A + + D I ++I R G+K
Sbjct: 426 GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 113/199 (56%), Gaps = 7/199 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV + +I A+ G EA + M ++ N T +++L+ACS+ AL G+
Sbjct: 293 RDVVVYNALIAALAQHGHNVEAFEQYYRM-RSDGVALNRTTYLSILNACSTSKALEAGKL 351
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS+IS D S++ +GNA+I+MY +CGD+ A ++F + +D+ISW+ +I+G A
Sbjct: 352 IHSHISE--DGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARR 409
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+A++L+ M GV P VTF+ L+SAC++ G ++ + + + + H
Sbjct: 410 EDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDI--LRSGIKSNGH 467
Query: 183 YA-CVVDMYGRAGLLEEAE 200
A +++MY R G L EA+
Sbjct: 468 LANALMNMYRRCGSLMEAQ 486
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 94/177 (53%), Gaps = 13/177 (7%)
Query: 30 QEMEKTKEAEPNE---ATLVNVLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNA 83
+++ T + P E AT V +L C+ L + +H+ + D+ +SNL+
Sbjct: 12 EDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLL--- 68
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
INMYVKC V A QVF + +D+ISW+++IS A G ++A QLF M G P+
Sbjct: 69 -INMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPN 127
Query: 144 DVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+T+I++++AC ++ G I + + Y+ P+ Q+ ++ MYG+ G L A
Sbjct: 128 KITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRA 182
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 181/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+++W T+I GY ER E++ VF ME ++ PN T ++++AC++++ L+
Sbjct: 272 MNQRDLITWNTLIAGY-ERSNPTESLYVFSMME-SEGFSPNCFTFTSIMAACATLAFLNC 329
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H I R L + + NA+I+MY KCG++ + QVF ++ +D++SW+ ++ G
Sbjct: 330 GQQIHGRI-IRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYG 388
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A++LF M+ +G+ PD V F+A++SACSH GLVD+GL FK M Y I P
Sbjct: 389 THGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQ 448
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ Y CVVD+ GRAG +EEA I MP + + VWG L AC+ H + +++
Sbjct: 449 EIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILD 508
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ ++SN +A +W + ++R ++RMG KK+TG SW+EV ++
Sbjct: 509 LRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVY 561
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 5/220 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV+WT MI GY A VF EM +E +PN T+ +VL AC + LS+
Sbjct: 69 MPERDVVAWTVMIAGYTSCNNHTHAWMVFCEM-MNEELDPNAFTISSVLKACKGMKCLSY 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH ++ ++ L V NA+++MY C + A VF + K+ +SW+T+I+G
Sbjct: 128 GRLVHG-LAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGY 186
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G L++F M++ V + +F + AC+ G G L A+ T +
Sbjct: 187 THRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAV-TKHGFESN 245
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY R EA + EM + + W L+
Sbjct: 246 LPVMNSILDMYCRCSCFSEANRYFYEMN-QRDLITWNTLI 284
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 109/208 (52%), Gaps = 26/208 (12%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ VSWTT+I GY R + VF++M +E E N + + AC+SI + +FG+
Sbjct: 174 KNEVSWTTLIAGYTHRDDGYGGLRVFRQM-LLEEVELNPFSFSIAVRACTSIGSHTFGEQ 232
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + T++ + V N++++MY +C A + F + +D+I+W+T+I+G +
Sbjct: 233 LHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN 291
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMST 172
++L +FS+M G P+ TF ++++AC+ HG ++ +GL A+S
Sbjct: 292 -PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSN 350
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAE 200
++DMY + G + ++
Sbjct: 351 A------------LIDMYSKCGNIADSH 366
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 180/291 (61%), Gaps = 2/291 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VV+WT +I GYAE+G +EA + +M + A + + + S LS G
Sbjct: 276 PAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAES-GLLSLG 334
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
HS I + +L+ + V NA+++MY KCG + A VFN + KD++SW+T++ GL +
Sbjct: 335 MRAHSIIK-KSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGV 393
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++A++LFS M G++PD VTFIA++ +C+H GL+D+G+ F +M VY++VP+ +
Sbjct: 394 HGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPKVE 453
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY C+VD+ GR G L+EA ++ MP+E +WGALL ACR+H ++ + LV
Sbjct: 454 HYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKL 513
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A+ WE IR +++ MG++K +G S +E+ I
Sbjct: 514 DPSDPGNYTLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 125/245 (51%), Gaps = 22/245 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW +M+GG + G +A +F EM + N T+++ + C +S +F
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWN--TMLDGYARCREMSR-AF 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118
+ + R +S S +V Y K GD+ +A +F+ + + K++++W+ +I+G
Sbjct: 237 ELF--EKMPERNTVSWSTMVMG-----YSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAG 289
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE--I 176
A G ++A +L M+ +G+ D I++++AC+ GL+ G+ +A S + + +
Sbjct: 290 YAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGLLSLGM---RAHSIIKKSNL 346
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFD 232
++DMY + G L++A +MP + + W +L+ +H + E+F
Sbjct: 347 NSNASVLNALLDMYAKCGSLKKAFDVFNDMP-KKDLVSWNTMLHGLGVHGHGKEAIELFS 405
Query: 233 PIRQE 237
+R+E
Sbjct: 406 RMRKE 410
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 5/158 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPK+D+VSW TM+ G G +EA+ +F M K + P++ T + VL +C+ +
Sbjct: 376 MPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRK-EGIWPDKVTFIAVLCSCNHAGLIDE 434
Query: 61 G-QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISG 118
G Y +S + YDL ++++ + G + AI+V + + +++ W ++
Sbjct: 435 GIDYFYS-MEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGA 493
Query: 119 LAMNGCGRQALQLF-SLMIINGVFPDDVTFIALISACS 155
M+ A ++ +L+ ++ P + T ++ I A +
Sbjct: 494 CRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAA 531
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 32/205 (15%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C++++ + + +H+ I R +L + +I+ C +A++VFN + +
Sbjct: 26 LPKCANLNQV---KQLHAQI-IRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPN 81
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HG 157
+ +++I A+N QA +FS M G+F D+ T+ L+ ACS H
Sbjct: 82 VHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHN 141
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL--EEAEAFIREMPIE--AEW- 212
+ GL S +Y VP ++D Y R G L +A +M W
Sbjct: 142 HIEKLGL-----SSDIY--VPN-----ALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 213 SVWGALLNACRIHRNDEMFDPIRQE 237
S+ G L+ A + ++FD + Q
Sbjct: 190 SMLGGLVKAGELRDARKLFDEMPQR 214
>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Glycine max]
Length = 923
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 177/289 (61%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+VSWT+MI G EA+ +F +++T +P+ +++ LSA +++S+L G+
Sbjct: 513 KDIVSWTSMITCCVHNGLPVEALELFYSLKQTN-IQPDSIAIISALSATANLSSLKKGKE 571
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ R + + +++++MY CG V + ++F+ + +D+I W+++I+ M+G
Sbjct: 572 IHGFL-IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHG 630
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CG +A+ LF M V PD +TF+AL+ ACSH GL+ +G F+ M Y++ P +HY
Sbjct: 631 CGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHY 690
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R+ LEEA F+R MPI+ +W ALL AC IH N E+ + +EL+
Sbjct: 691 ACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDT 750
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G +AL+SN FA RW D ++R ++ GLKK GCSWIEV+ I
Sbjct: 751 ENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKI 799
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 127/236 (53%), Gaps = 27/236 (11%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D++SWTT+I GYA+ F EA+++F++++ K + + + +VL ACS + + +F
Sbjct: 410 MHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQ-VKGMDVDPMMIGSVLRACSGLKSRNF 468
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H Y+ R DL+ ++ NA++N+Y + G + A + F + KD++SW+++I+
Sbjct: 469 IREIHGYVFKR-DLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCV 526
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
NG +AL+LF + + PD + I+ +SA + HG L+ +G L
Sbjct: 527 HNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGP 586
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+++ +VDMY G +E + + + + +W +++NA +H
Sbjct: 587 IAS------------SLVDMYACCGTVENSRKMFHSVK-QRDLILWTSMINANGMH 629
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 133/257 (51%), Gaps = 29/257 (11%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD VSW T++ G + +A++ F++M+ + + +P++ +++N+++A L G+
Sbjct: 312 RDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ-KPDQVSVLNLIAASGRSGNLLKGKE 370
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+Y + R L + +GN +++MY KC V F + KD+ISW+T+I+G A N
Sbjct: 371 VHAY-AIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNE 429
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI------LFKAMSTVYEIV 177
+A+ LF + + G+ D + +++ ACS GL + I +FK + +I+
Sbjct: 430 FHLEAINLFRKVQVKGMDVDPMMIGSVLRACS--GLKSRNFIREIHGYVFK--RDLADIM 485
Query: 178 PQTQHYACVVDMYGRAGLLEEA-EAF--IREMPIEAEWSVWGALLNACRIHRN-----DE 229
Q +V++YG G ++ A AF IR I + W +++ C +H E
Sbjct: 486 LQN----AIVNVYGEVGHIDYARRAFESIRSKDIVS----WTSMITCC-VHNGLPVEALE 536
Query: 230 MFDPIRQELVNKKGVSV 246
+F ++Q + +++
Sbjct: 537 LFYSLKQTNIQPDSIAI 553
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K D VSW ++I + G C EA+S+F+ M++ A N T V L S +
Sbjct: 208 MEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVAS-NTYTFVAALQGVEDPSFVKL 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + + V NA+I MY KCG + A +VF + +D +SW+T++SGL
Sbjct: 267 GMGIHGAV-LKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLV 325
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N AL F M +G PD V+ + LI+A G + +G
Sbjct: 326 QNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKG 368
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 18/229 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R + SW ++G + G EA+ ++++M + + T +VL AC ++
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDM-RVLGVAIDACTFPSVLKACGALGESRL 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWSTVISG 118
G +H ++ + V NA+I MY KCGD+G A +F+ M+ +D +SW+++IS
Sbjct: 164 GAEIHG-VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
G +AL LF M GV + TF+A + V G+ ++ V
Sbjct: 223 HVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM-------GIHGAVL 275
Query: 179 QTQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ H+A ++ MY + G +E+A M + ++ W LL+
Sbjct: 276 KSNHFADVYVANALIAMYAKCGRMEDAGRVFESM-LCRDYVSWNTLLSG 323
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C + AL GQ +H+ + + +S + ++ MY KCG + A++VF+ ++ +
Sbjct: 52 LLDLCVAAKALPQGQQLHALLLKSH---LSAFLATKLVLMYGKCGSLRDAVKVFDEMSER 108
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL--- 164
+ SW+ ++ +G +A++L+ M + GV D TF +++ AC G L + L
Sbjct: 109 TIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKAC--GALGESRLGAE 166
Query: 165 ILFKAMSTVY-EIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLN 220
I A+ Y E V + C ++ MYG+ G L A + +E E +V W ++++
Sbjct: 167 IHGVAVKCGYGEFV-----FVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIIS 221
Query: 221 A 221
A
Sbjct: 222 A 222
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 177/293 (60%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+TMI G+A G +A + F+E+ + + PNE +L VLSAC+ A F
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRR-EGMRPNEVSLTGVLSACAQAGAFEF 287
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ L + + V NA+I+ Y KCG++ +A VF+ + + +SW+ +I+G+A
Sbjct: 288 GRILHGFVEKSGFLQIIS-VNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMA 346
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G +A++LF+ M + + PD +TFI+++ ACSH GLVD G F M Y I P
Sbjct: 347 MHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVI 406
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG L++A F+ +MPI VW LL AC IH N + ++++L
Sbjct: 407 EHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSE 466
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D +R + LKK G S IEVN I+
Sbjct: 467 LDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIY 519
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 18/219 (8%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+I YAE A VF EM EPN +++AC + + V +
Sbjct: 145 TTLISMYAECACLVFARKVFDEM-----IEPNIVAWNAIVAACFRCEGVKDAEQVFRCMP 199
Query: 70 TRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R NL N ++ Y K G++ +A +VF + KD +SWST+I G A NG A
Sbjct: 200 IR------NLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDA 253
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQTQHYACV 186
F + G+ P++V+ ++SAC+ G + G IL F S +I+ +
Sbjct: 254 FAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNN---AL 310
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+D Y + G L+ A M + S W A++ +H
Sbjct: 311 IDTYSKCGNLDMARLVFDNMLRRSAVS-WTAMIAGMAMH 348
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACS 155
A ++F + D+ ++T+I GL+ + ALQLF M V PD +F L+ A +
Sbjct: 58 ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117
Query: 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
+ + GL L ++ Y + ++ MY L A EM IE W
Sbjct: 118 NCRALTNGLQL-HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEM-IEPNIVAW 175
Query: 216 GALLNAC 222
A++ AC
Sbjct: 176 NAIVAAC 182
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 181/293 (61%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+++W T+I GY ER E++ VF ME ++ PN T ++++AC++++ L+
Sbjct: 256 MNQRDLITWNTLIAGY-ERSNPTESLYVFSMME-SEGFSPNCFTFTSIMAACATLAFLNC 313
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H I R L + + NA+I+MY KCG++ + QVF ++ +D++SW+ ++ G
Sbjct: 314 GQQIHGRI-IRRGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYG 372
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A++LF M+ +G+ PD V F+A++SACSH GLVD+GL FK M Y I P
Sbjct: 373 THGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQ 432
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ Y CVVD+ GRAG +EEA I MP + + VWG L AC+ H + +++
Sbjct: 433 EIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILD 492
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ ++SN +A +W + ++R ++RMG KK+TG SW+EV ++
Sbjct: 493 LRPHMAGTYVMLSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVY 545
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 109/208 (52%), Gaps = 26/208 (12%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++ VSWTT+I GY R + VF++M +E E N + + AC+SI + +FG+
Sbjct: 158 KNEVSWTTLIAGYTHRDDGYGGLRVFRQM-LLEEVELNPFSFSIAVRACTSIGSHTFGEQ 216
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + T++ + V N++++MY +C A + F + +D+I+W+T+I+G +
Sbjct: 217 LHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSN 275
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMST 172
++L +FS+M G P+ TF ++++AC+ HG ++ +GL A+S
Sbjct: 276 -PTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSN 334
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAE 200
++DMY + G + ++
Sbjct: 335 A------------LIDMYSKCGNIADSH 350
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 20/235 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVS---------------VFQEMEKTKEAEPNEATL 45
+PK V TT+I Y +G EA+ VF EM +E +PN T+
Sbjct: 38 IPKGPSVLATTLIKSYFGKGLIGEALMIAGYTSCNNHTHAWMVFCEM-MNEELDPNAFTI 96
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNML 104
+VL AC + LS+G+ VH ++ ++ L V NA+++MY C + A VF +
Sbjct: 97 SSVLKACKGMKCLSYGRLVHG-LAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGI 155
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
K+ +SW+T+I+G G L++F M++ V + +F + AC+ G G
Sbjct: 156 HLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGE 215
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
L A+ T + ++DMY R EA + EM + + W L+
Sbjct: 216 QLHAAV-TKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN-QRDLITWNTLI 268
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSW ++I G ++ EA+ F+ M+ K + TL +L C+ ++AL
Sbjct: 239 MPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQG-KGMGFSWVTLTTILPVCARVTALGS 297
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + V N++++MY KCG + +VFN + KD+ SW+T+I+G A
Sbjct: 298 GKEIHAVI-VKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYA 356
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +A++ F MI +G PD +TFIAL+S CSH GL D G LF+ M Y I P
Sbjct: 357 INGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDYGISPTV 416
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++EA ++ MP + S+WG+LLN+CR+H N + + + + L
Sbjct: 417 EHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFE 476
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A WE +R+ + + G+ K+ GCSW+++ I
Sbjct: 477 LEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKI 528
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W M GY+ G+ +EA+ ++ EM + + L ACS + L G+ VH+ +
Sbjct: 146 WVAMGIGYSRNGYPKEALLLYYEM-VCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQV 204
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ +V NA++ +Y + G A++VF+ + +++++SW+++I+GL +A
Sbjct: 205 -LKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEA 263
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
++ F +M G+ VT ++ C+ + G + A+ P +VD
Sbjct: 264 IEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI-HAVIVKSTAKPDAPVLNSLVD 322
Query: 189 MYGRAGLLE 197
MY + G ++
Sbjct: 323 MYAKCGAMD 331
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 182/288 (63%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R V+S++ MI Y EA+ +F+E+ K EP+++ +++VL AC+++ AL
Sbjct: 180 MPERSVISYSAMIAAYVRGNRFREALDLFRELFSVK-IEPSDSCVMSVLCACANLGALDV 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V+SY+ V + + A+I+M+ KCG + A+ VF K + W+ ++SGLA
Sbjct: 239 GRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLSGLA 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G Q ++ F M+ +GV P+ VTF+AL+S CSH GLV++GL F M + + + P
Sbjct: 299 MHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTV 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+ CVVD+ GRAGL+++A I EMP E ++WG+LLNACR+++N E+ + Q L+
Sbjct: 359 EHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGSLLNACRVYKNVEIGELAAQWLIK 418
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + + + + + A RW++ K++ +++ +G +K GCS IEV
Sbjct: 419 DEPWNGALYMTLLSLYREAGRWDEVEKVKLKMKEVGCRKGPGCSLIEV 466
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 119/279 (42%), Gaps = 38/279 (13%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ TM YA A+ + + M + P+ T +L ACS+++ L GQ +H
Sbjct: 56 YNTMFRVYAASPTPLHALLLHRHMLR-HGPPPDTYTFPFLLKACSALAHLPKGQELHCQ- 113
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG--- 125
+ ++ L V N++I++Y + A +VF+ + Y+D+ SW+T+++ A N C
Sbjct: 114 ALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYA-NSCSVKA 172
Query: 126 -----------------------------RQALQLFSLMIINGVFPDDVTFIALISACSH 156
R+AL LF + + P D ++++ AC++
Sbjct: 173 ARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACAN 232
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G +D G ++ + ++ ++DM+ + G +E A + E E W
Sbjct: 233 LGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHA-LLVFEGAKEKHVGEWT 291
Query: 217 ALLNACRIHRNDEMFDPIRQELVNK--KGVSVGTFALMS 253
A+L+ +H E +++V+ K V AL+S
Sbjct: 292 AMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLS 330
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 175/284 (61%), Gaps = 8/284 (2%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
SW +IGG + G E+A+ V M+ + +PN+ T+ +VL AC+++ +L G+ +H Y
Sbjct: 282 SWNAVIGGCMQNGRTEKALEVLSRMQNSG-FKPNQITITSVLPACTNLESLRGGKQIHGY 340
Query: 68 ISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
I + DL+ + A++ MY KCGD+ ++ +VF+M+ +D +SW+T+I +M+G
Sbjct: 341 IFRHWFFQDLTTTT----ALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGN 396
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G +AL LF M+ +GV P+ VTF ++S CSH LVD+GL++F +MS + + P H++
Sbjct: 397 GEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHS 456
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ RAG LEEA FI++MPIE WGALL CR+++N E+ L +
Sbjct: 457 CMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESD 516
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN A W +A++ R +R G+ K GCSWI+V
Sbjct: 517 NPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 37/274 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDV+SWT+M Y G EA+ F++M E PN T+ ++L AC+ + L
Sbjct: 139 MPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGE-RPNSVTVSSILPACTDLKDLKS 197
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH ++ R + + V +A++NMY C + A VF+ ++ +D +SW+ +I+
Sbjct: 198 GREVHGFV-VRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS--------- 171
+N + L +F M+ GV + ++ A+I C G ++ L + M
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316
Query: 172 TVYEIVP------------QTQHY-------------ACVVDMYGRAGLLEEAEAFIREM 206
T+ ++P Q Y +V MY + G LE + + M
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRR-VFSM 375
Query: 207 PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ + W ++ A +H N E + +E+V+
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D+ +WT +I + G EA+ + + EP++ L++V AC+S+ +
Sbjct: 37 IPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMN 96
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH + R+ L+GNA+I+MY KC A VF + ++D+ISW+++ S
Sbjct: 97 AKRVHED-AIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYV 155
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL 164
G R+AL F M +NG P+ VT +++ AC+ HG +V G+
Sbjct: 156 NCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGM 210
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
M KRD VSW TMI + G EEA+ +F+EM + PN T VLS CS
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSG-VRPNSVTFTGVLSGCS 427
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 14/132 (10%)
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFPD 143
I +Y GD+ A +F+ + D+ +W+ +IS L +G +A+Q ++ N V PD
Sbjct: 18 IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77
Query: 144 DVTFIALISACS------HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197
+ +++ AC+ + V + I F S V ++DMYG+ E
Sbjct: 78 KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLL-------GNALIDMYGKCRCSE 130
Query: 198 EAEAFIREMPIE 209
A MP
Sbjct: 131 GARLVFEGMPFR 142
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 175/290 (60%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD ++W I YA+ G +EA+S+F M K +PN+ TL VLSAC+SI AL
Sbjct: 280 MPSRDFITWNAAISAYAQNGMADEAISLFHSM-KENGVDPNKVTLTAVLSACASIGALDL 338
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + Y + R L V A+I+MY KCG + A +VFN + K+ SW+ +IS LA
Sbjct: 339 GKQMDEYATHR-GLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALA 397
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++AL LF M G P+D+TF++L+SAC H GLVD+G LF MST++ +VP
Sbjct: 398 SHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVP 457
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY+C+VD+ RAG L EA I +MP + + GAL +AC+ +N ++ + + Q L
Sbjct: 458 KIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQML 517
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + + S + + W+DA ++R +R G+ K GCSWIEV
Sbjct: 518 LELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+VSW +++ GYA+ GF EAV VF + + EP+E +LV+VL AC + L G+
Sbjct: 180 EKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGR 239
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+V ++ R + V++ +G+A+I+MY KCG++ + ++F+ + +D I+W+ IS A N
Sbjct: 240 WVEGFVVER-GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+ LF M NGV P+ VT A++SAC+ G +D G K M Y QH
Sbjct: 299 GMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLG----KQMDE-YATHRGLQH 353
Query: 183 ----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G LE A+ +MP + + S W A+++A H
Sbjct: 354 DIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMISALASH 399
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 104/203 (51%), Gaps = 15/203 (7%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
+ ++ +M KT PN T V AC+++ + + H + + L + N++
Sbjct: 101 TLHLYHQM-KTLNISPNNFTFPFVFLACANLEEIRMARLAHCEV-FKLGLDNDHHTVNSM 158
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFPD 143
+ MY +CG+ G+A +VF+ + KD++SW++++SG A G R+A+++F L +G PD
Sbjct: 159 VTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218
Query: 144 DVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
+++ ++++ AC G ++ +G ++ + M I + ++ MY + G L
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG------SALISMYSKCGELVS 272
Query: 199 AEAFIREMPIEAEWSVWGALLNA 221
+ MP ++ W A ++A
Sbjct: 273 SRRIFDGMP-SRDFITWNAAISA 294
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 172/293 (58%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V++W +I YA+ G EEA+ +F ++ K P T NVL+AC +I+ L
Sbjct: 103 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACGNIAVLQL 161
Query: 61 GQYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
GQ H ++ R+D + VGN++++MY+K G + +VF +A +D +SW+ +
Sbjct: 162 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 221
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG + AL LF M+ + PD VT I ++SAC H GLVD+G F M+ +
Sbjct: 222 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHG 281
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
I P HY C+VD+ GRAG L+EAE I++MP E + +W +LL ACR+H+N E+ +
Sbjct: 282 ITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTA 341
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L + G + L+SN +A +W D ++R ++ G+ K+ GCSWIE+
Sbjct: 342 GRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEI 394
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 101/216 (46%), Gaps = 37/216 (17%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG------- 92
P+E TL +V+SAC+ ++A G+ VH+++ R L ++ NA+++MY KCG
Sbjct: 8 PDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARC 67
Query: 93 ------------------------DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+V A VF+ + K++I+W+ +I+ A NG +A
Sbjct: 68 IFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEA 127
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLV---DQGLILFKAMSTVYEIVPQTQHYA- 184
++LF + + ++P T+ +++AC + ++ Q + ++ P++ +
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187
Query: 185 -CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G +++ M S W A++
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAMI 222
>gi|414879943|tpg|DAA57074.1| TPA: hypothetical protein ZEAMMB73_804341 [Zea mays]
Length = 1056
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 177/289 (61%), Gaps = 3/289 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISALSFG 61
RD+VSW ++ +A+ G +A+ +++ M + + EP+ T+V VLS+ + + A G
Sbjct: 640 RDLVSWNAVLSAHAQNGLAVDALDLYRRMRSPEGSGVEPDAVTIVGVLSSAAHLGARGVG 699
Query: 62 QYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y+ R +N+ + NA+IN + +CG + A Q+F+ + K ++SW+ +I+G
Sbjct: 700 FDAEHYVVQRLPGFRTNVQLCNALINFHARCGSLPRAQQLFDEMPAKSIVSWTALITGHG 759
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G A+ LF M+ G+ PD+V + ++SACSH GL D+G + F M +VY++ P
Sbjct: 760 MHGNGGVAVSLFERMVSEGIHPDNVAMVGVLSACSHAGLYDEGRMYFSTMESVYKLRPTL 819
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LEEA I MP+ A+ +VWGALL AC+IH+N E+ + +V
Sbjct: 820 EHYTCIVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVEIGEEAFARVVE 879
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +VG + LMSN + + + ++R +R+ GLKK+ GCS++E N
Sbjct: 880 LEPRNVGYYVLMSNIYTDTGQLDCVARVRAVMRKRGLKKEPGCSYVEHN 928
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 169/292 (57%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++++SW MI G A+ GF EEA+ F M K + EP + + +CS + +L
Sbjct: 385 MPEKNILSWIIMISGLAQIGFAEEALKFFNRM-KLQGFEPCDYAFAGAIISCSVLGSLKH 443
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + RY S GNA+I MY +CG V A +F + D ISW+ +I+ L
Sbjct: 444 GRQLHAQV-VRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALG 502
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G QA++LF M+ G+ PD ++F+ +ISACSH GLV +G F +M VY + P
Sbjct: 503 QHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDE 562
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA ++D+ RAG EA+ + MP E +W ALL CRIH N ++ + L
Sbjct: 563 EHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFE 622
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K GT+ L+SN +A A +W D K+R +R G+KK+ GCSWIEV +
Sbjct: 623 LKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKV 674
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 123/273 (45%), Gaps = 41/273 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+ V+W MI GYA RG EA +F++M +K + +E T +V+S C++ G+
Sbjct: 251 KKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSK-IQLDEFTFTSVISVCANAGCFRLGK 309
Query: 63 YVHSY-ISTRYDLS--VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV---- 115
+H+Y + T + + V+ V NA+I Y KCG V IA ++FN + +D++SW+ +
Sbjct: 310 EMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGY 369
Query: 116 ---------------------------ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI 148
ISGLA G +AL+ F+ M + G P D F
Sbjct: 370 VNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFA 429
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
I +CS G + G L A Y ++ MY R G+++ A MP
Sbjct: 430 GAIISCSVLGSLKHGRQL-HAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPC 488
Query: 209 EAEWSVWGALLNACRIHRND----EMFDPIRQE 237
S W A++ A H E+F+ + +E
Sbjct: 489 VDAIS-WNAMIAALGQHGQGTQAIELFEEMLKE 520
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-SFGQ 62
RD V + MI Y+ A+ +F +M++ P+ T +VL A + ++ Q
Sbjct: 110 RDSVFYNAMITAYSHNHDGHAAIELFCDMQR-DNFRPDNYTFTSVLGALALVAEKEKHCQ 168
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGD---------VGIAIQVFNMLAYKDMISWS 113
+H + V++++ NA+I+ YVKC + A ++F+ + +D +SW+
Sbjct: 169 QLHCAVVKSGTGFVTSVL-NALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWT 227
Query: 114 TV-------------------------------ISGLAMNGCGRQALQLFSLMIINGVFP 142
T+ ISG A G +A ++F MI++ +
Sbjct: 228 TIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQL 287
Query: 143 DDVTFIALISACSHGGLVDQGLILFKA-MSTVYEIVPQTQHYA--CVVDMYGRAGLLEEA 199
D+ TF ++IS C++ G G + + TV P ++ Y + G ++ A
Sbjct: 288 DEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIA 347
Query: 200 EAFIREMPIEAEWSVWGALLN 220
+ +MP E + W +L+
Sbjct: 348 QEIFNKMP-ERDLVSWNIILS 367
>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 182/286 (63%), Gaps = 3/286 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV+WT MI GY + G +A+ +F+ M + EPN TL +LS SS++ L G+
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLM-VNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISGLAMN 122
+H+ + + S + V NA+I MY K G++ +A +VF++ K+++SW+++I LA +
Sbjct: 431 IHAS-AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G++A+ LF M+ G+ PD +T++ ++SAC+H GLV+QG + M+ V+EI P H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC++D+YGRAGLL+EA FI MPIE + WG+LL +C+IH+N ++ + L+
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + ++N ++ +WE+A + R ++ G++K+ G SWI +
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 103/196 (52%), Gaps = 34/196 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW +MI GY+++G+ EA+ +F +M +P+ TL ++LSAC+++ L+
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI------------------------ 96
G+ +H+YI R + S VGNA+I+MY K G V I
Sbjct: 294 GKQIHAYI-LRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDG 352
Query: 97 ---------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
A ++FN L +D+++W+ +I G NG AL+LF LM+ G P+ T
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412
Query: 148 IALISACSHGGLVDQG 163
A++S S +++ G
Sbjct: 413 AAMLSVSSSLTILEHG 428
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 43/241 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D VSWT +I GY + G + A+ +F +M ++ P++ T+ NVLS+C++ L
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDI 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------- 107
G+ +HS++ + L V +++NMY KCGD IA VF+ + K
Sbjct: 161 GRKIHSFV-VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYM 219
Query: 108 ------------------DMISWSTVISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTFI 148
D++SW+++ISG + G +AL +FS M+ + PD+ T
Sbjct: 220 QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLA 279
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV----VDMYGRAGLLEEAEAFIR 204
+++SAC++ ++ G + Y + +T+ V + MY ++G +E A +
Sbjct: 280 SILSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334
Query: 205 E 205
Sbjct: 335 H 335
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+++VSWT+MI A+ G +EA+++F+ M +P+ T V VLSAC+ + + G+
Sbjct: 473 KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG-MKPDHITYVGVLSACTHVGLVEQGR 531
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDMISWSTVIS 117
++ ++ +++ + +I++Y + G + A + + +M D I+W ++++
Sbjct: 532 KYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I + L + + N ++ Y K G + A VF+ + K SW+T+ISG A
Sbjct: 29 GRSVHCQI-IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYA 87
Query: 121 MNGCGRQALQLFSLMIINGVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
G + +L M P D V++ A+I + GL D + +F M + E VP
Sbjct: 88 KQGNFEVSRRLLYEM------PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM--ISERVP 139
Query: 179 QTQ 181
+Q
Sbjct: 140 PSQ 142
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
N+++ + +L F +V + + S N +I+ Y K G+ ++ ++ +
Sbjct: 50 NLMTFYAKTGSLRFAHHVFDEMPLK-----STFSWNTLISGYAKQGNFEVSRRLLYEMPD 104
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
D +SW+ +I G G A+ +F+ MI V P T ++S+C+ +D G
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG--- 161
Query: 167 FKAMSTVYEIVPQTQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
++ V + +CV ++MY + G A+ M ++ S W AL++
Sbjct: 162 ----RKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK-NISTWNALIS 216
>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Cucumis sativus]
Length = 782
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 182/286 (63%), Gaps = 3/286 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVV+WT MI GY + G +A+ +F+ M + EPN TL +LS SS++ L G+
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLM-VNEGPEPNSYTLAAMLSVSSSLTILEHGKQ 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISGLAMN 122
+H+ + + S + V NA+I MY K G++ +A +VF++ K+++SW+++I LA +
Sbjct: 431 IHAS-AIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G++A+ LF M+ G+ PD +T++ ++SAC+H GLV+QG + M+ V+EI P H
Sbjct: 490 GLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSH 549
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC++D+YGRAGLL+EA FI MPIE + WG+LL +C+IH+N ++ + L+
Sbjct: 550 YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLID 609
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + ++N ++ +WE+A + R ++ G++K+ G SWI +
Sbjct: 610 PGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKEKGISWIHI 655
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 34/196 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW +MI GY+++G+ EA+++F +M +P+ TL ++LSAC+++ L+
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI------------------------ 96
G+ +H+YI R + S VGNA+I+MY K G V I
Sbjct: 294 GKQIHAYI-LRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDG 352
Query: 97 ---------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
A ++FN L +D+++W+ +I G NG AL+LF LM+ G P+ T
Sbjct: 353 YTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTL 412
Query: 148 IALISACSHGGLVDQG 163
A++S S +++ G
Sbjct: 413 AAMLSVSSSLTILEHG 428
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 117/241 (48%), Gaps = 43/241 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D VSWT +I GY + G + A+ +F +M ++ P++ T+ NVLS+C++ L
Sbjct: 102 MPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM-ISERVPPSQFTVSNVLSSCAANQTLDI 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------------- 107
G+ +HS++ + L V +++NMY KCGD IA VF+ + K
Sbjct: 161 GRKIHSFV-VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYM 219
Query: 108 ------------------DMISWSTVISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTFI 148
D++SW+++ISG + G +AL +FS M+ + PD+ T
Sbjct: 220 QSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLA 279
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV----VDMYGRAGLLEEAEAFIR 204
+++SAC++ ++ G + Y + +T+ V + MY ++G +E A +
Sbjct: 280 SILSACANLEKLNIGKQIH-----AYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334
Query: 205 E 205
Sbjct: 335 H 335
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+++VSWT+MI A+ G +EA+++F+ M +P+ T V VLSAC+ + + G+
Sbjct: 473 KKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG-MKPDHITYVGVLSACTHVGLVEQGR 531
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA-IQVFNMLAYKDMISWSTVIS 117
++ ++ +++ + +I++Y + G + A + + +M D I+W ++++
Sbjct: 532 KYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH I + L + + N ++ Y K G + A VF+ + K SW+T+ISG A
Sbjct: 29 GRSVHCQI-IKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYA 87
Query: 121 MNGCGRQALQLFSLMIINGVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
G + +L M P D V++ A+I + GL D + +F M + E VP
Sbjct: 88 KQGNFEVSRRLLYEM------PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM--ISERVP 139
Query: 179 QTQ 181
+Q
Sbjct: 140 PSQ 142
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
N+++ + +L F +V + + S N +I+ Y K G+ ++ ++ +
Sbjct: 50 NLMTFYAKTGSLRFAHHVFDEMPLK-----STFSWNTLISGYAKQGNFEVSRRLLYEMPD 104
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
D +SW+ +I G G A+ +F+ MI V P T ++S+C+ +D G
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIG--- 161
Query: 167 FKAMSTVYEIVPQTQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
++ V + +CV ++MY + G A+ M ++ S W AL++
Sbjct: 162 ----RKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVK-NISTWNALIS 216
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW +++ GYA RG + +M K P+ T+++++SA + AL
Sbjct: 258 MPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEK-VIPDTVTMISLVSAATESGALDQ 316
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H ++ R + + +G+A+I+MY KCG + A +VF + KD+ W+T+I+GLA
Sbjct: 317 GRWAHGWV-IRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLA 375
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL+LFS M V PDDVTF++++SACSH GLVDQG+ +F +M T Y I P
Sbjct: 376 FHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSM-TDYGIEPGV 433
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ R+G L EA+ I +MP++ S+WGA+LNAC+ + E+ + +EL+N
Sbjct: 434 EHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLN 493
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A + RW + KIR+ + G+KK GCS + V+
Sbjct: 494 LDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVD 542
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 43/276 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D+VS+ MI GYA++GF EA+ +F EM EP+E T++ +L +C + + F
Sbjct: 124 MPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLG-LEPDEFTILGLLVSCGQLGNVKF 182
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH ++ R SNL+ GNA+++MYVKC V +A++ F L KD++SW+ +++G
Sbjct: 183 GKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGC 242
Query: 120 AMNGCGRQALQLF------------SL-------------------MIINGVFPDDVTFI 148
A G QA F SL M++ V PD VT I
Sbjct: 243 AKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMI 302
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREM 206
+L+SA + G +DQG A V + + + + ++DMY + G +E A +E+
Sbjct: 303 SLVSAATESGALDQGRW---AHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEI 359
Query: 207 PIEAEWSVWGALLNACRIH----RNDEMFDPIRQEL 238
+ + +VW ++ H + E+F +++++
Sbjct: 360 N-KKDVTVWTTMITGLAFHGYGSKALELFSEMQEDV 394
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 39/218 (17%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P++ TL+ +L A + IS + + +H S L N +I +Y++ G V +A Q
Sbjct: 64 PDKQTLLYLLQAVNFISQV---KQIHCQAIVTGLFSFGYL-QNTLIKVYLENGLVRLAHQ 119
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF + D++S++ +I G A G G +A++LF M+ G+ PD+ T + L+ +C G
Sbjct: 120 VFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGN 179
Query: 160 VDQG-----------------LILFKAMSTVY------EIVPQT---------QHYACVV 187
V G LIL A+ +Y E+ +T + +V
Sbjct: 180 VKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIV 239
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACR 223
+ G LE+A F +MP S W +L+ ACR
Sbjct: 240 AGCAKVGELEQARLFFYQMPCRDIVS-WNSLVTGYACR 276
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 182/289 (62%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+WT MI GY + G +EA+ +F+ M ++ EPN T+ VLS C+S++ L +
Sbjct: 389 MSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGP-EPNSYTVAAVLSVCASLACLEY 447
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H + R S+ V N+++ MY + G + A +VF+ + + K+ ++W+++I L
Sbjct: 448 GKQIHCK-AIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVAL 506
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G A+ LF M+ GV PD +TF+ ++SAC+H G VD+G F+ + + IVP+
Sbjct: 507 AQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPE 566
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+VD+ RAGL EA+ FI++MP+E + WG+LL+ACR+H+N ++ + ++L+
Sbjct: 567 MSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLL 626
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G ++ +SN ++ RW DA KI + +KK+TG SW +
Sbjct: 627 SIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHI 675
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 124/259 (47%), Gaps = 37/259 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW +I GY + G +A+ F M P+E T+ +VLSAC+++ +S
Sbjct: 254 MPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSI 313
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM--------------------------------- 87
G+ VH+YI R + V NA+I+M
Sbjct: 314 GKQVHAYI-LRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEG 372
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
YVK GD+ A ++F++++ +D+++W+ +I G NG +A++LF LMI +G P+ T
Sbjct: 373 YVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTV 432
Query: 148 IALISACSHGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
A++S C+ ++ G I KA+ ++ E + +V MY R+G L A +
Sbjct: 433 AAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSN--SIVTMYARSGSLPWARRVFDRV 490
Query: 207 PIEAEWSVWGALLNACRIH 225
E W +++ A H
Sbjct: 491 HWRKETVTWTSMIVALAQH 509
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 45/242 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSWT M+ G G EA+ +F +M T P + TL NVLS+C++ A
Sbjct: 122 MPERDPVSWTVMVVGLNRVGRFGEAIKMFLDM-VTDGLSPTQFTLTNVLSSCAATEARGV 180
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD--------------------------- 93
G+ VHS++ + LS V N+V+NMY KCGD
Sbjct: 181 GRKVHSFV-VKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDA 239
Query: 94 ----VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTFI 148
+ +A+ +F + + ++SW+ VI+G NG +AL FS M+ + + PD+ T
Sbjct: 240 HLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTIT 299
Query: 149 ALISACSHGGLVDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
+++SAC++ G+V G IL M + ++ ++ MY ++G +E A +
Sbjct: 300 SVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN------ALISMYAKSGSVENARGVM 353
Query: 204 RE 205
++
Sbjct: 354 QQ 355
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+++++Y K G + A VF + +D +SW+ ++ GL G +A+++F M+ +G+
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLS 159
Query: 142 PDDVTFIALISAC--SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
P T ++S+C + V + + F + VP V++MYG+ G E A
Sbjct: 160 PTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVAN---SVLNMYGKCGDAETA 216
Query: 200 EAFIREMPIEAEWSVWGALLN 220
A MP E S W A+++
Sbjct: 217 RAVFERMP-ERSVSSWNAMVS 236
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 181/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+W MI GYA+ G EA+S+F M+K P++ TL VLSACS++ AL G
Sbjct: 294 KDVVAWNAMITGYAQNGMSNEAISLFHNMKKAGVC-PDKITLAGVLSACSAVGALELGSE 352
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y S R L + VG A+++MY KCGD+ AI+VF + K++ SW+ +I GLA NG
Sbjct: 353 LDGYASCR-GLYNNVYVGTALVDMYAKCGDLDKAIEVFRKMRCKNVASWNALICGLAFNG 411
Query: 124 CGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+Q F LM +G+ PDD+TFI ++SAC H GLV G F ++++ ++I+P+ +H
Sbjct: 412 QGDEAIQHFELMRNEDGLKPDDITFIGVLSACVHAGLVKDGKRWFNSLTSEFQIIPKIEH 471
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD R+G LEE FI ++P + + + GALL ACR +N E+ + + ++ +
Sbjct: 472 YSCMVDPLARSGHLEEVWDFIEKIPDKVDAVMLGALLAACRKCKNVEIGERVINRIIQLE 531
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A + R +D+ K+R +R G+ K GCSW+E++ +
Sbjct: 532 PTNSWNYVVSSKIYASSGRLDDSAKMRGLMRERGVNKTPGCSWVEISGKVL 582
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 3/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW M+ Y G E + ++M K PN TL VL+AC L
Sbjct: 189 IPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVL 248
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V + S + +LVG+A++ MY KCG++ A +VF+ + KD+++W+ +I+G A
Sbjct: 249 GRWVEEW-SKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYA 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+ LF M GV PD +T ++SACS G ++ G L ++ +
Sbjct: 308 QNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVGALELGSEL-DGYASCRGLYNNV 366
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G L++A R+M + S W AL+
Sbjct: 367 YVGTALVDMYAKCGDLDKAIEVFRKMRCKNVAS-WNALI 404
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
+ DL+ + +++I +Y D G A +VFN + +D++SW+ ++ G + +
Sbjct: 156 KIDLNSHDHTVHSLITIYSYLDDPGAARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGR 215
Query: 131 LFSLMIING-VFPDDVTFIALISACSHGG 158
+ M+ +G V P+ VT +++AC G
Sbjct: 216 MLRDMVKDGAVVPNAVTLAVVLAACRDEG 244
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/295 (37%), Positives = 181/295 (61%), Gaps = 8/295 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW ++I G+ + EA+ VF+ M++ + TL +L C+ ++AL
Sbjct: 91 MPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGF-SWVTLTTILPICARVTALLS 149
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+ I + R D+ LV N++++MYVKCG V ++F+ + KD+ SW+T+++
Sbjct: 150 GKEIHAQIVKSARRPDV----LVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLT 205
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G A+NG R A+ LF+ M G+ PDDVTFIAL+S CSH GL + G LF M + +
Sbjct: 206 GYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVS 265
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P +HYAC+VDM GRAG ++ A ++ MP++ S+WG+LLN+CR+H + + I
Sbjct: 266 PSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLHNEVPLAEAIANR 325
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + + G + ++SN +A A W+ N +R+ ++ ++K+ GCSWI+V I
Sbjct: 326 LFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTRRIRKEAGCSWIQVKNKI 380
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 6/212 (2%)
Query: 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL 74
GY++ GF EA+ V+ EM EP L AC+ + L G+ VH+ + +
Sbjct: 4 GYSKNGFLREALLVYVEM-LWNCMEPGNFAFSTALKACADLRELWVGRGVHAQV-VKSSE 61
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
+V N ++ +Y +C ++VF+ + +++ SW+++ISG +AL +F
Sbjct: 62 GPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRR 121
Query: 135 MIINGVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
M G+ VT ++ C+ L+ I + + + P +VDMY +
Sbjct: 122 MQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARR--PDVLVLNSLVDMYVKC 179
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
G+++ M + + W +L I+
Sbjct: 180 GVVDYGRRLFDGMR-SKDLTSWNTMLTGYAIN 210
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 184/294 (62%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++V+W +I + G EA+ +F M K EP+EAT V +LSACS++ AL F
Sbjct: 149 IPNPELVAWNIIIDCHVSCGKFNEALEMFSRMLKFG-IEPDEATFVVILSACSALGALDF 207
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VHS IS ++ V N++++MY KCG + A ++FN + K+ ++W+T+I GLA
Sbjct: 208 GRWVHSCISNIGHGCITE-VNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLA 266
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G +AL LFS M+ ++ PDD+TF+ ++SACSHGG+VD+G F M Y I P
Sbjct: 267 SHGYANEALALFSNMLEQKLWAPDDITFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPT 326
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG +EEA I MP++ VW LL ACR+H N E+ +R++L+
Sbjct: 327 IKHYGCMVDILGRAGFVEEAYRLISNMPMQCNAIVWRTLLAACRLHGNVELGKQVRKQLL 386
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK-KTGCSWIEVNPSI 292
+ + L++NT+A A RW +A ++R + + G++K + G S + +PS+
Sbjct: 387 ELEPDHSSDYVLLANTYASAGRWNEAMRVRKTMHKRGVQKPEPGNSVVGRHPSL 440
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 99/196 (50%), Gaps = 5/196 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + TMI G+ + +A ++ M++ + + T +L C + + G+ +
Sbjct: 52 DAFIFNTMIRGFGKANDPRKAFDYYKRMQE-RGLVSDSFTFSFLLKVCGQLGLVLLGRLM 110
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H R L+ V N +++MY D+ + Q+F + ++++W+ +I G
Sbjct: 111 HCSTLKR-GLNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGK 169
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHY 183
+AL++FS M+ G+ PD+ TF+ ++SACS G +D G + +S + + + + +
Sbjct: 170 FNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNN- 228
Query: 184 ACVVDMYGRAGLLEEA 199
++DMY + G L+EA
Sbjct: 229 -SLLDMYAKCGALQEA 243
>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
Length = 1229
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+ +VSW MIG Y + EAV ++ ME EP+ ++ +VL AC SALS
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSL 327
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R L + L+ NA+I+MY KCG + A VF + +D++SW+ +IS
Sbjct: 328 GKKIHGYIE-RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LFS + +G+ PD + F+ ++ACSH GL+++G FK M+ Y+I P+
Sbjct: 387 FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRL 446
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ GRAG ++EA FI++M +E VWGALL ACR+H + ++ +L
Sbjct: 447 EHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ 506
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A A RWE+ IR+ ++ GLKK G S +EVN
Sbjct: 507 LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+V+ MI Y GF E V VF M P+ T VL ACS +
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVI 158
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +T+ LS + VGN +++MY KCG + A V + ++ +D++SW++++ G A
Sbjct: 159 GRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
N AL++ M + D T +L+ A S+
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +++ GYA+ ++A+ V +EME K + + T+ ++L A
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISH-DAGTMASLLPA--------- 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VSN V MYVK +F + K ++SW+ +I
Sbjct: 251 ---------------VSNTTTENV--MYVK--------DMFFKMGKKSLVSWNVMIGVYM 285
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A++L+S M +G PD V+ +++ AC + G + + +++P
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER-KKLIPNL 344
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G LE+A M S W A+++A
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVS-WTAMISA 384
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 24/276 (8%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSV 76
R F VS + + P E + VL I L + VHS I DL
Sbjct: 17 RKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILE-DLRC 72
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
++ +G ++ Y DV A +VF+ + +++I + +I NG + +++F M
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132
Query: 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAG 194
V PD TF ++ ACS G + +I K + ++ + + +V MYG+ G
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTI---VIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCG 189
Query: 195 LLEEAEAFIREMPIEAEWSVWGAL-LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM- 252
L EA + EM + W +L + + R D+ + R+ K GT A +
Sbjct: 190 FLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLL 248
Query: 253 ---SNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
SNT E+ ++D +MG KK+ SW
Sbjct: 249 PAVSNTTT-----ENVMYVKDMFFKMG--KKSLVSW 277
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 184/294 (62%), Gaps = 6/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D++ W M+ GY + G EA+ +F+ M ++ EP+E ++V LSA + +
Sbjct: 219 LPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSG-VEPDEVSVVLALSAVAQLGTAES 277
Query: 61 GQYVHSYI--STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVI 116
G+++HS++ S+ + ++ VG A+I+MY KCG + A+ VF L +D+++W+ ++
Sbjct: 278 GRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMV 337
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
+G AM+G R+AL F + G++P D+TFI +++ACSH GLVD+G LF++M+ Y I
Sbjct: 338 NGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGI 397
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMP-IEAEWSVWGALLNACRIHRNDEMFDPIR 235
P+ +HY C+VD+ GRAG +EEA ++ M + + +W +LL ACR+H+N E+ I
Sbjct: 398 EPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIA 457
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
LV + GT+ L+SN +A A W + ++R +R G++K+ GCS +EV
Sbjct: 458 DHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVG 511
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 39/259 (15%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P V +T+ I ++ RG A+++ EM + P TL L AC L+ G
Sbjct: 89 PDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPACG---GLAVG 145
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMY--------------------------------V 89
+ +H Y + + LS V A++ MY
Sbjct: 146 RALHGY-AVKLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYA 204
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
K G + A +F+ L KD+I W+ ++ G +G +AL+LF M+ +GV PD+V+ +
Sbjct: 205 KMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVL 264
Query: 150 LISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+SA + G + G L F S+ + + ++DMY + G LE+A A ++
Sbjct: 265 ALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLG 324
Query: 208 I-EAEWSVWGALLNACRIH 225
+ + W A++N +H
Sbjct: 325 AGDRDIVAWNAMVNGYAMH 343
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 177/286 (61%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD +SW +++ GY + G EA+ +F++M T + +P +V+ AC+ ++ L G+
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMV-TAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H Y+ R + + +A+++MY KCG++ A ++F+ + D +SW+ +I G A++G
Sbjct: 365 LHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ LF M GV P+ V F+A+++ACSH GLVD+ F +M+ VY + + +HY
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 483
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
A V D+ GRAG LEEA FI +M +E SVW LL++C +H+N E+ + + +++
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++G + LM N +A RW++ K+R +R+ GL+KK CSWIE+
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 18/254 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVS+ T+I GYA+ G E+A+ + +EM T + +P+ TL +VL S +
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIK 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R + +G+++++MY K + + +VF+ L +D ISW+++++G
Sbjct: 261 GKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
NG +AL+LF M+ V P V F ++I AC+H + G +L +
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MF 231
I + +VDMY + G ++ A M + E S W A++ +H + +F
Sbjct: 380 IA------SALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHGHGHEAVSLF 432
Query: 232 DPIRQELVNKKGVS 245
+ ++++ V V+
Sbjct: 433 EEMKRQGVKPNQVA 446
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 49/236 (20%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V++W ++I + ++ +A++ F EM + P+ +VL +C+ + L FG+ VH
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--------------------------- 98
+I R + GNA++NMY K +G I
Sbjct: 129 GFI-VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187
Query: 99 ---------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+VF ++ KD++S++T+I+G A +G AL++ M + PD T +
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247
Query: 150 LISACSH-----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
++ S G G ++ K + + I + +VDMY ++ +E++E
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI------GSSLVDMYAKSARIEDSE 297
>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g49142
gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
Length = 686
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+ +VSW MIG Y + EAV ++ ME EP+ ++ +VL AC SALS
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSL 327
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R L + L+ NA+I+MY KCG + A VF + +D++SW+ +IS
Sbjct: 328 GKKIHGYIE-RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LFS + +G+ PD + F+ ++ACSH GL+++G FK M+ Y+I P+
Sbjct: 387 FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRL 446
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ GRAG ++EA FI++M +E VWGALL ACR+H + ++ +L
Sbjct: 447 EHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ 506
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A A RWE+ IR+ ++ GLKK G S +EVN
Sbjct: 507 LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+V+ MI Y GF E V VF M P+ T VL ACS +
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVI 158
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +T+ LS + VGN +++MY KCG + A V + ++ +D++SW++++ G A
Sbjct: 159 GRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
N AL++ M + D T +L+ A S+
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +++ GYA+ ++A+ V +EME K + + T+ ++L A
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISH-DAGTMASLLPA--------- 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VSN V MYVK +F + K ++SW+ +I
Sbjct: 251 ---------------VSNTTTENV--MYVK--------DMFFKMGKKSLVSWNVMIGVYM 285
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A++L+S M +G PD V+ +++ AC + G + + +++P
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER-KKLIPNL 344
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G LE+A M S W A+++A
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVS-WTAMISA 384
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 22/275 (8%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSV 76
R F VS + + P E + VL I L + VHS I DL
Sbjct: 17 RKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILE-DLRC 72
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
++ +G ++ Y DV A +VF+ + +++I + +I NG + +++F M
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132
Query: 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC-VVDMYGRAGL 195
V PD TF ++ ACS G + G + + + V + T +V MYG+ G
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG--LSSTLFVGNGLVSMYGKCGF 190
Query: 196 LEEAEAFIREMPIEAEWSVWGAL-LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM-- 252
L EA + EM + W +L + + R D+ + R+ K GT A +
Sbjct: 191 LSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249
Query: 253 --SNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
SNT E+ ++D +MG KK+ SW
Sbjct: 250 AVSNTTT-----ENVMYVKDMFFKMG--KKSLVSW 277
>gi|125528180|gb|EAY76294.1| hypothetical protein OsI_04228 [Oryza sativa Indica Group]
Length = 646
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 174/292 (59%), Gaps = 5/292 (1%)
Query: 1 MPK--RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSIS 56
MP+ RD+VSW +I +A+ G EAV +++ M + EP+ TLV VLS+C+
Sbjct: 226 MPRASRDLVSWNAVISAHAQNGLAVEAVELYRRMRGPEGGGVEPDAVTLVGVLSSCAHTG 285
Query: 57 ALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A G V Y+ NL + NA+IN + +CG + A ++F+ + + ++SW+ +
Sbjct: 286 ARRVGLDVEQYVRDTIPGFRDNLPLCNALINFHARCGSLAQAQELFDEMPERSVVSWTAL 345
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G M+G G A+ LF M+ PD V + L+SACSH G+ D+G F M Y
Sbjct: 346 IIGYGMHGQGDIAVDLFETMVSEATAPDSVAMVGLLSACSHAGMYDEGRKYFSTMERDYC 405
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P+ +HY C+VD+ GRAG L+EA I MP+ A+ +VWGALL AC+IH+N EM +
Sbjct: 406 LRPKLEHYTCMVDLLGRAGRLDEARELIASMPMAADGAVWGALLGACKIHKNVEMGEEAF 465
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +V+ + +VG + LM+N +A A + + K+R +RR GL+K+ GCS++E
Sbjct: 466 ERVVSLEPANVGYYVLMANIYADAGQLDGVAKVRAAMRRRGLRKEPGCSYVE 517
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 182/292 (62%), Gaps = 3/292 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+DVV+W MI GYA+ G EA+++F M + P++ TLV VLS+C+++ AL G
Sbjct: 282 HKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLC-PDKITLVGVLSSCAAVGALKLGV 340
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ +Y + R L + VG A+++MY KCGD+ A VF + +K+ SW+ +I GLA N
Sbjct: 341 ELDTY-AMRRGLYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFN 399
Query: 123 GCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
G G A+Q F LM G+ PDD+TFI ++SAC H GL++ G LF +++ V++I+P+ +
Sbjct: 400 GRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIE 459
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY+C+VD+ RAG LEEA FI EMP + + + GALL ACR +N E+ + + ++
Sbjct: 460 HYSCIVDLLARAGHLEEAWDFIEEMPGKVDAVMLGALLAACRKCKNTEVGERVINRIMKL 519
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + + S +A +D+ +++ ++ +R G+ K GCSW+EVN +
Sbjct: 520 EPSNSWNYVVSSKIYATSDKMDESARMIGLMRERGVNKTPGCSWVEVNGKVL 571
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 135/246 (54%), Gaps = 11/246 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
RDVVSW +M+ Y G E + + M PN TL VL+AC L G+
Sbjct: 180 HRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGR 239
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+V ++ + + V +L+G+A++ MY KCG++ A +VF+ + +KD+++W+ +I+G A N
Sbjct: 240 WVEEWVRSA-GMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQN 298
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL--FKAMSTVYEIVPQT 180
G +A+ LF M G+ PD +T + ++S+C+ G + G+ L + +Y V
Sbjct: 299 GMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVG 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ-ELV 239
+VDMY + G LE+A +MP + E S W AL+ C + N +D I+Q EL+
Sbjct: 359 ---TALVDMYAKCGDLEKATHVFGKMPFKNEAS-WNALI--CGLAFNGRGYDAIQQFELM 412
Query: 240 -NKKGV 244
++KG+
Sbjct: 413 RDEKGL 418
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++ SW +I G A G +A+ F+ M K +P++ T + VLSAC L +
Sbjct: 381 MPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSACVHAGLLEY 440
Query: 61 GQYVHSYISTRYDL 74
G+ + + ++ + +
Sbjct: 441 GRQLFNSLTPVFKI 454
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 23 EEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81
+ ++ +F M + + P+ TL +L A + A + + H+ + + L +
Sbjct: 97 DTSLRLFLSMLRAEVRVRPDAYTLPFLLLAAARCPAPALARSAHALLE-KIGLGDHDHTV 155
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-V 140
+++I MY D A +VF+ ++++D++SW++++ G + + M+ G V
Sbjct: 156 HSLITMYSCLDDHLAARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAV 215
Query: 141 FPDDVTFIALISACSHGG 158
P+ VT +++AC G
Sbjct: 216 APNGVTLAVVLTACRDAG 233
>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
Length = 778
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 184/290 (63%), Gaps = 3/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+V+WT+MI Y + A+ +F++M K P+ TL++++ A S++++ ++
Sbjct: 262 KDLVAWTSMIEAYVQADLPINALELFKQM-KLLGIVPDSVTLLSLIHAVSNLASFQLARF 320
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH I TR + AVI++YVKCG++ A + F+ ++ +++ISWST+ISG M+G
Sbjct: 321 VHGVI-TRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLISWSTMISGYGMHG 379
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR+AL LF M + + PD + F+ ++SACSHGGL+ +G FKAM+ + + P+T+HY
Sbjct: 380 HGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEGWECFKAMNRDFGVTPRTEHY 438
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAG L EA+AFI MPI + VWGALL ACRIH N E + + L N
Sbjct: 439 ACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLETAETAARHLFNLDA 498
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A + + ++A+ IR ++ G++K G + IE+ ++
Sbjct: 499 ENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKNKVY 548
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 129/275 (46%), Gaps = 27/275 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC--SSISAL 58
MP+R+VVSW++M+G YA G EE + +F M A PN ++VN + AC A
Sbjct: 161 MPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIA-PNRGSIVNAM-ACIHREHEAD 218
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
F + V I D S V NA + MY +CG + +A + F + KD+++W+++I
Sbjct: 219 DFCRVV---IDNGLDSDQS--VQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEA 273
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AL+LF M + G+ PD VT ++LI A S+ L F+ V+ ++
Sbjct: 274 YVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSN-------LASFQLARFVHGVIT 326
Query: 179 QT---QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE--- 229
++ H A V+D+Y + G LE A M S W +++ +H +
Sbjct: 327 RSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLIS-WSTMISGYGMHGHGREAL 385
Query: 230 -MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWE 263
+FD ++ + V + S+ A+ WE
Sbjct: 386 CLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWE 420
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 70/152 (46%), Gaps = 3/152 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W +I ++ ++ ++ M + N T +L AC ++ G
Sbjct: 64 NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATN-FTFPFLLKACGCLADFELGARA 122
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+++ + V N+++ MY + G + QVF + ++++SWS+++ A NG
Sbjct: 123 HAHVVV-FGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGR 181
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSH 156
+ L LF M+ G+ P+ + + + AC H
Sbjct: 182 YEEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH 212
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 26/180 (14%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
L A S+ A ++H ++ T ++I Y G + A +F+
Sbjct: 16 TLEALKSLHASILKSHLHPHLCT------------SLIAQYASLGSISHAYALFSTSHSS 63
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC------SHGGLVD 161
++ W+ +I + R +L+L+S M+ G+ + TF L+ AC G
Sbjct: 64 NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAH 123
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++F S V+ V + ++ MYGR G + + MP E W +++ A
Sbjct: 124 AHVVVFGYESDVF--VANS-----LMAMYGRFGCFDFSRQVFERMP-ERNVVSWSSMVGA 175
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 186/293 (63%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD SW++M+ Y + ++A+ +++EM + P+ T+V+VLSACS + AL+
Sbjct: 163 MDDRDAFSWSSMMSAYTKGRRSKDALELWREM-RAACVNPDCTTMVSVLSACSDMGALAV 221
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH ++ S +L V +G A+I+MY KCGD+ +++VF+ + KD+++WS++I GL
Sbjct: 222 GAEVHQFVESNGVELDVK--LGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGL 279
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G AL LFS M+ G+ P++VTFI ++ +C+H GLV G F +MS V+ + P+
Sbjct: 280 ANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPK 339
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
QHY C+VD+ GR+G +EEA+ IR+MP E + +W ALL ACRI++N E+ + +L
Sbjct: 340 VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLR 399
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A+ WE ++R +RR +++ G S IE +I
Sbjct: 400 VLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTI 452
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 27/213 (12%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNV-LSACSSISALSFGQY 63
D+ T ++ YA+ G + A + F E A + L NV L+A + ++ +
Sbjct: 74 DLFVRTALVEAYAKAGRADLARAAFDE------APRRDVFLCNVMLAAYVTRGEVAEARR 127
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V + R ++V N +I+ Y G+V +A +VFN + +D SWS+++S
Sbjct: 128 VFDGMRER------DMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKG 181
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-- 180
+ AL+L+ M V PD T ++++SACS G + G + V++ V
Sbjct: 182 RRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVG-------AEVHQFVESNGV 234
Query: 181 ----QHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++DMY + G +E + MP++
Sbjct: 235 ELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK 267
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 183/292 (62%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V++ MIGGYA +EA+ +F +++ + +P++ T +N+L+AC++ +L +
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQE-EGLKPDKVTYINMLNACANSGSLEW 548
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+ + S ++ VGNA+++ Y KCG A VF + +++ISW+ +I G A
Sbjct: 549 AREIHTLVRKGGFFSDTS-VGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSA 607
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G+ ALQLF M + GV PD VTF++L+SACSH GL+++G F +MS + I+P
Sbjct: 608 QHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTI 667
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAEA I+ MP +A +WGALL ACRIH N + + + +
Sbjct: 668 EHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLK 727
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + +S+ +A A W+ A K+R + + G+ K+ G SWI+V +
Sbjct: 728 LDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKL 779
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 107/161 (66%), Gaps = 2/161 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV+SWT MIGG A+ GF EA++V+QEM++ EPN T ++L+ACSS +AL +
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG-VEPNRVTYTSILNACSSPAALEW 447
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + L+ VGN ++NMY CG V A QVF+ + +D+++++ +I G A
Sbjct: 448 GRRIHQQV-VEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYA 506
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ G++AL+LF + G+ PD VT+I +++AC++ G ++
Sbjct: 507 AHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLE 547
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 154/284 (54%), Gaps = 15/284 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+++W TMIGG AE G+ EEA V+ +M++ + PN+ T V +L+AC + +AL +G+
Sbjct: 291 RDLIAWNTMIGGLAEGGYWEEASEVYNQMQR-EGVMPNKITYVILLNACVNSAALHWGKE 349
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HS ++ + + V NA+I+MY +CG + A VF+ + KD+ISW+ +I GLA +G
Sbjct: 350 IHSRVA-KAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL ++ M GV P+ VT+ ++++ACS ++ G + + V E T +
Sbjct: 409 FGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQ---QVVEAGLATDAH 465
Query: 184 A--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQE 237
+V+MY G +++A M I+ + + A++ H ++FD +++E
Sbjct: 466 VGNTLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEE 524
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281
+ V T+ M N A + E A +I +R+ G T
Sbjct: 525 GLKPDKV---TYINMLNACANSGSLEWAREIHTLVRKGGFFSDT 565
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 10/222 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+ VVSWT IGGYA+ G E A +FQ+ME+ + PN T ++VL+A SS +AL +
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQ-EGVVPNRITYISVLNAFSSPAALKW 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS I S VG A++ MY KCG QVF L +D+I+W+T+I GLA
Sbjct: 246 GKAVHSRILNAGHES-DTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST---VYEIV 177
G +A ++++ M GV P+ +T++ L++AC + + G + ++ +I
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
Q ++ MY R G +++A +M + + W A++
Sbjct: 365 VQN----ALISMYSRCGSIKDARLVFDKM-VRKDVISWTAMI 401
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 136/276 (49%), Gaps = 40/276 (14%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R V SW M+ GY + G+ E+A+ + ++M++ A P+ T+++ LS+C S AL +G+
Sbjct: 88 ERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA-PDRTTIMSFLSSCKSPGALEWGR 146
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + + + L V N ++NMY KCG + A +VF+ + K ++SW+ I G A
Sbjct: 147 EIH-FQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQTQ 181
G A ++F M GV P+ +T+I++++A S + G + + ++ +E T
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHE--SDTA 263
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
+V MY + G ++ CR + ++LVN+
Sbjct: 264 VGTALVKMYAKCGSYKD-----------------------CR---------QVFEKLVNR 291
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++ T M A WE+A+++ ++++R G+
Sbjct: 292 DLIAWNT---MIGGLAEGGYWEEASEVYNQMQREGV 324
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
AV V Q +++ + A+ N + + +L C + L G+ VH +I + V NA+
Sbjct: 7 AVDVVQYLQQ-QGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTV-NAL 64
Query: 85 INMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
INMY++CG + A QV+ L+Y + + SW+ ++ G G +AL+L M +G+ P
Sbjct: 65 INMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124
Query: 143 DDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
D T ++ +S+C G ++ G I F+AM ++ + C+++MY + G +EEA
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEARE 182
Query: 202 FIREMPIEA--EWSVW-GALLNACRIHRNDEMFDPIRQELV 239
+M ++ W++ G + R E+F + QE V
Sbjct: 183 VFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGV 223
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ MI GY GF EEA+ +F M PN A +V ++AC+S+ AL
Sbjct: 203 MPERNSVSWSAMITGYVRVGFFEEALELFNAM-LISGFWPNHAGIVCAINACASLGALDQ 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H YI R + + ++G A+I+MY KCG + IA +F L +D+ ++ +ISGLA
Sbjct: 262 GRWIHCYIK-RNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A++LF M GV P++VTF+++++ACS GLVD+GL +F+ MS +Y PQ
Sbjct: 321 NHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQV 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG LEEA+ ++EMP++ + V GALLNA R++ + E+ + + L
Sbjct: 381 QHYGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQ 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G ++SN +A A++W++ ++R + ++K GCS I+V+
Sbjct: 441 LSLDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVD 489
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 108/236 (45%), Gaps = 32/236 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ R W T+I +AE+ +A+ +F+ M + PN T + AC+ ++ L
Sbjct: 71 LRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFL-PNNYTYSFLFKACTDLNNLYL 129
Query: 61 GQYVHSYI--------------------------STR--YDLSVSN--LVGNAVINMYVK 90
G H S R +DLS + + A+IN YV+
Sbjct: 130 GLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVR 189
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
G V I ++F+ + ++ +SWS +I+G G +AL+LF+ M+I+G +P+ +
Sbjct: 190 AGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCA 249
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I+AC+ G +DQG + + + + A ++DMY + G +E A + E+
Sbjct: 250 INACASLGALDQGRWIHCYIKRNRMDLDRVMG-AALIDMYAKCGCIEIACSIFGEL 304
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 192/291 (65%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVS T +I GYA+ G EEA+ +F+ ++ + + N T VL+A S ++AL
Sbjct: 426 LPERDVVSCTAIISGYAQLGLDEEALELFRRLQ-GEGMKSNYVTYTGVLTALSGLAALDL 484
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R ++ ++ N++I+MY KCG++ + ++F+ + + +ISW+ ++ G +
Sbjct: 485 GKQVHNHV-LRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYS 543
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVP 178
+G GR+ L+LF+LM V PD VT +A++S CSHGGL D+GL +F MS+ E+ P
Sbjct: 544 KHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEP 603
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY CVVD+ GR+G +EEA FI++MP E ++WG+LL ACR+H N ++ + Q+L
Sbjct: 604 KMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQL 663
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + G + ++SN +A A RWED + +RD + + + K+ G S IE++
Sbjct: 664 LEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELD 714
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 30/284 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVF-----------QEMEKTKEA---------EP 40
MP+R+VVSWT MI Y++RG+ +A+++F ++K K + EP
Sbjct: 304 MPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEP 363
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
NE T VL++C+S G+ +HS I Y+ V VG+++++MY K G + A
Sbjct: 364 NEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHV--FVGSSLLDMYAKDGKIHEART 421
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
VF L +D++S + +ISG A G +AL+LF + G+ + VT+ +++A S
Sbjct: 422 VFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAA 481
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+D G + + EI ++DMY + G L + M E W A+L
Sbjct: 482 LDLGKQVHNHVLRS-EIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTM-YERTVISWNAML 539
Query: 220 NACRIHRND----EMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259
H ++F +R+E K SV A++S G
Sbjct: 540 VGYSKHGEGREVLKLFTLMREE-TKVKPDSVTILAVLSGCSHGG 582
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 31/185 (16%)
Query: 48 VLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
+L+ C + A GQ VH++ I TRY SV + +I +Y KC +G A VF+ +
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSV--FLRTRLIVLYTKCDSLGDAHNVFDEMPE 306
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMI---INGVF------------------PDDV 145
++++SW+ +IS + G QAL LF + + GV+ P++
Sbjct: 307 RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEF 366
Query: 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY---ACVVDMYGRAGLLEEAEAF 202
TF ++++C+ G IL + + ++ + H + ++DMY + G + EA
Sbjct: 367 TFATVLTSCTSS----LGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTV 422
Query: 203 IREMP 207
+P
Sbjct: 423 FECLP 427
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 177/293 (60%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD V+W M+GGYA G EA+ +F M+ + A+P+ T+V LSAC+ + AL
Sbjct: 103 MKNRDAVAWGAMVGGYASNGHPREALDLFFAMQ-MEGAKPDCYTVVGALSACTRLGALDL 161
Query: 61 GQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ + +D + N ++G A+I+MY KCG A VF + +D+I W+ +I GL
Sbjct: 162 GRQAVGMV--HWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGL 219
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M G + A L M +GV +D TFI L+ +C+H GLV+ G F M+ VY I P+
Sbjct: 220 GMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPR 279
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD++ RAGLLEEA I +MP+ A VWGALL C+IHRN ++ + ++L+
Sbjct: 280 IEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLI 339
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN ++ + RWEDA K+R E++ G++K SW+E++ +
Sbjct: 340 RLEPWNSGNYVMLSNIYSNSGRWEDAAKLRLEMKAKGIEKVPASSWVELDGKV 392
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 7/221 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP VSWT +I Y + G EA+ V + + P+ T V VL+AC+ ++ L
Sbjct: 1 MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASG-MRPDSFTAVRVLTACARVADLET 59
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V + ++ S V A +++YVKCG++ A VF+ + +D ++W ++ G A
Sbjct: 60 GEAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYA 119
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVP 178
NG R+AL LF M + G PD T + +SAC+ G +D G +A+ V+ E++
Sbjct: 120 SNGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGR---QAVGMVHWDEVLG 176
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G EA ++M +E + VW A++
Sbjct: 177 NPVLGTALIDMYAKCGSTSEAWMVFQQM-LERDIIVWNAMI 216
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/296 (39%), Positives = 190/296 (64%), Gaps = 4/296 (1%)
Query: 1 MPK--RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP+ RDVVSWTT+I GY + EA+++F+ M + +P+E ++ VLSAC+ + AL
Sbjct: 219 MPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIM-LLQNVQPDEIAILAVLSACADLGAL 277
Query: 59 SFGQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+++H+YI + L + + N++I+MY K GD+ A Q+F + +K +I+W+TVIS
Sbjct: 278 QLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVIS 337
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GLA++G G++AL +FS M V P++VT IA++SACSH GLV+ G +F +M + Y I
Sbjct: 338 GLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIE 397
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P+ +HY C++D+ GRAG L+EA +R MP EA +VWG+LL+A + + + +
Sbjct: 398 PKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAAVWGSLLSASNRYGDAALAAEALRH 457
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
L + + G ++L+SNT+A W++A +R +R +K G S++E+N ++
Sbjct: 458 LSVLEPHNCGNYSLLSNTYAALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVY 513
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 44/221 (19%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH-SYISTRYDLSVSNLVGN 82
A+S+F + + P+ + VL A +SA+ G+ +H I + D S V
Sbjct: 110 RAISLFNAI-RLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPS--VVT 166
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYK---------------------------------DM 109
+++ MY C + A ++F+ +K D+
Sbjct: 167 SLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDV 226
Query: 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF-- 167
+SW+T+ISG +A+ LF +M++ V PD++ +A++SAC+ G + G +
Sbjct: 227 VSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNY 286
Query: 168 --KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
K + + + VP ++DMY ++G + +A + M
Sbjct: 287 IEKHNNKLRKTVPLCN---SLIDMYAKSGDISKARQLFQNM 324
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 175/293 (59%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALS 59
MP RD V+W MI +A+S+F M+ + + EP++ T + +L AC+ ++AL
Sbjct: 165 MPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALE 224
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ +H YI R NL N++I+MY +CG + A +VF + K+++SWS +ISGL
Sbjct: 225 FGERIHGYIMERGYRDALNLC-NSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGL 283
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AMNG GR+A++ F M+ GV PDD TF ++SACS+ G+VD+G+ F MS + + P
Sbjct: 284 AMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTPN 343
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C+VD+ GRAGLL++A I M ++ + ++W LL ACRIH + + + + L+
Sbjct: 344 VHHYGCMVDLLGRAGLLDKAYQLIMSMVVKPDSTMWRTLLGACRIHGHVTLGERVIGHLI 403
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + L+ N ++ A WE ++R ++ ++ GCS IE+ ++
Sbjct: 404 ELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAV 456
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 23/212 (10%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQYV 64
V + TMI + ++ + ++++M + A+P ++ + +C L G V
Sbjct: 69 VSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFA--VKSCIRFLYLPGGVQV 126
Query: 65 HSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H I ++D L+ AV+++Y C G A +VF+ + ++D ++W+ +IS
Sbjct: 127 HCNIFKDGHQWD----TLLLTAVMDLYSLCQRGGDACKVFDEMPHRDTVAWNVMISCCIR 182
Query: 122 NGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVY 174
N R AL LF +M + PDDVT + L+ AC+H ++ G I+ +
Sbjct: 183 NNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGERIHGYIMERGYRDAL 242
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++ MY R G L++A + M
Sbjct: 243 NLCNS------LISMYSRCGCLDKAYEVFKGM 268
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 182/294 (61%), Gaps = 6/294 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ + SW MI G + G + A+S+FQ M+K PN T+ ++LSAC+ I ALS G+
Sbjct: 195 EKTLASWNAMISGCTQNGLTDAAISLFQTMQKNN-VNPNPVTVTSILSACAQIGALSLGE 253
Query: 63 YVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+VHS I S R++ +V V A+I+MY KCG + +A ++F+++ K+ ++W+ +ISG +
Sbjct: 254 WVHSLIKSNRFESNV--YVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGL 311
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL+LF M+ + V P +TF++++ ACSH GLV +G +F M + P +
Sbjct: 312 HGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAE 371
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAG L++A FI+ MP+E VWGALL AC IH++ + ++L
Sbjct: 372 HYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFEL 431
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN--PSIF 293
++G + LMSN ++ ++ A +R ++ L K GC+ IE+ P +F
Sbjct: 432 DPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVF 485
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 16/233 (6%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+D++S MI G+ G E++V +F+E+ + E + +T+V ++ S
Sbjct: 94 KKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE-RVSSSTIVGLIPVYSPFGHSYLCN 152
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + +S S+ V A+ +Y + ++ A Q+F+ A K + SW+ +ISG N
Sbjct: 153 CIHGFCVKLGIVSHSS-VSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQN 211
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A+ LF M N V P+ VT +++SAC+ G + G V+ ++ +
Sbjct: 212 GLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG-------EWVHSLIKSNRF 264
Query: 183 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ V +DMY + G + A MP + E + W A+++ +H + +
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVT-WNAMISGYGLHGHGQ 316
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 31/251 (12%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-QYVHSYIST 70
MI G+ + E+++ VF +M + T++ VL A + + L G Q + I
Sbjct: 1 MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60
Query: 71 RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ 130
+ VS L G +I+++ KCG+V IA +F + KD+IS + +ISG NG +++
Sbjct: 61 GFYSHVSLLTG--LISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVR 118
Query: 131 LFSLMIINGVFPDDVTFIALISA-----------CSHGGLVDQGLILFKAMSTVYEIVPQ 179
LF ++ +G T + LI C HG V G++ ++ST V
Sbjct: 119 LFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTV-- 176
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIR 235
Y + +M L +E+ E + W A+++ C + + +F ++
Sbjct: 177 ---YCRLNEMIFARQLFDESA--------EKTLASWNAMISGCTQNGLTDAAISLFQTMQ 225
Query: 236 QELVNKKGVSV 246
+ VN V+V
Sbjct: 226 KNNVNPNPVTV 236
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS 53
MP+++ V+W MI GY G +EA+ +F +M + +P T ++VL ACS
Sbjct: 294 MPEKNEVTWNAMISGYGLHGHGQEALKLFYDM-LSSSVKPTGLTFLSVLYACS 345
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 184/289 (63%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++V+W +MIG Y + G EA+ +F +M + +P++AT + V+ AC+ + AL
Sbjct: 274 MPHRNLVAWNSMIGAYNQYGQANEALDLFSDM-RIAGFDPDKATFLCVIGACAHLGALVS 332
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+Y+S + +L+ +G A+++MY K GD A QVF+ L KD+ +W+++I GLA
Sbjct: 333 GQALHAYVS-KTNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLA 391
Query: 121 MNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +AL F M + + PD++T+I ++SACSH G V+ G F +M V+ I P
Sbjct: 392 MHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPT 451
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
TQHY C+VD+ RAG L EAE + +MP+E ++W ALLN C+I++N ++ D +R+ +
Sbjct: 452 TQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAIWSALLNGCKIYQNIDVADRVRRRVR 511
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +AGA RWE+ R+ ++ ++K G S +E+
Sbjct: 512 ELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKERKIQKSLGHSSVEM 560
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 9/235 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK +VV+WT++I G EAV V+++ME A PNE T+VNVL AC+ L+
Sbjct: 166 IPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVA-PNEITMVNVLVACARSRDLNA 224
Query: 61 GQYVHSYISTR-YDLSVSN-----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
G++VH D SN ++ A+++MY KCG + A +FN + ++++++W++
Sbjct: 225 GRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNS 284
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G +AL LFS M I G PD TF+ +I AC+H G + G L +S
Sbjct: 285 MIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKT- 343
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ T +VDMY ++G E A+ E+ + + + W +L+ +H + E
Sbjct: 344 NLTDDTAIGTALVDMYAKSGDAERAQQVFSELQ-KKDVTAWTSLIIGLAMHGHGE 397
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 19/224 (8%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +MI GY+ +EA+++++EM + K P+ T VL ACS ++ + GQ VH+ I
Sbjct: 73 WNSMIKGYSISESPDEALTMYREM-RQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCI 131
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ V A++ MY CGD+ A++VF+ + ++++W+++I+G N C +A
Sbjct: 132 -VKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEA 190
Query: 129 LQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIV 177
++++ M + V P+++T + ++ AC+ H GL F++ S I+
Sbjct: 191 VRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVIL 250
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+VDMY + G L+ A +MP W +++ A
Sbjct: 251 ATA-----IVDMYAKCGSLKTARDLFNKMP-HRNLVAWNSMIGA 288
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y G++ A VFN + + W+++I G +++ +AL ++ M G PD TF
Sbjct: 49 YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108
Query: 148 IALISACSHGGLVDQGLILFKAM-STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
++ ACS + G + + T +E+ ++ MY G +E A ++
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEV--DVYAATALLQMYAACGDMEAALKVFDDI 166
Query: 207 PIEAEWSV--WGALLNAC----------RIHRNDEMFDPIRQELVNKKGVSVGTFALMSN 254
P +W+V W +L+ C R++++ E++ E+ M N
Sbjct: 167 P---KWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEIT------------MVN 211
Query: 255 TFAGADRWEDANK---IRDEIRRMGL 277
R D N + D +MGL
Sbjct: 212 VLVACARSRDLNAGRWVHDRTGQMGL 237
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 175/290 (60%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD ++W I YA+ G +EA+S+F M K +PN+ TL VLSAC+SI AL
Sbjct: 280 MPSRDFITWNAAISAYAQNGMADEAISLFHSM-KENGVDPNKVTLTAVLSACASIGALDL 338
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + Y + R L V A+I+MY KCG + A +VFN + K+ SW+ +IS LA
Sbjct: 339 GKQMDEYATHR-GLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALA 397
Query: 121 MNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G ++AL LF M G P+D+TF++L+SAC H GLVD+G LF MST++ +VP
Sbjct: 398 SHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVP 457
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY+C+VD+ RAG L EA I +MP + + GAL +AC+ +N ++ + + Q L
Sbjct: 458 KIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQML 517
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + + S + + W+DA ++R +R G+ K GCSWIEV
Sbjct: 518 LELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEV 567
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 11/227 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+VSW +++ GYA+ GF EAV VF + + EP+E +LV+VL AC + L G+
Sbjct: 180 EKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGR 239
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+V ++ R + V++ +G+A+I+MY KCG++ + ++F+ + +D I+W+ IS A N
Sbjct: 240 WVEGFVVER-GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQN 298
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +A+ LF M NGV P+ VT A++SAC+ G +D G K M Y QH
Sbjct: 299 GMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLG----KQMDE-YATHRGLQH 353
Query: 183 ----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G LE A+ +MP + + S W A+++A H
Sbjct: 354 DIFVATALIDMYAKCGSLESAQRVFNDMPRKNDAS-WNAMISALASH 399
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 104/203 (51%), Gaps = 15/203 (7%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
+ ++ +M KT PN T V AC+++ + + H + + L + N++
Sbjct: 101 TLHLYHQM-KTLNISPNNFTFPFVFLACANLEEIRMARLAHCEV-FKLGLDNDHHTVNSM 158
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS-LMIINGVFPD 143
+ MY +CG+ G+A +VF+ + KD++SW++++SG A G R+A+++F L +G PD
Sbjct: 159 VTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPD 218
Query: 144 DVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
+++ ++++ AC G ++ +G ++ + M I + ++ MY + G L
Sbjct: 219 EMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG------SALISMYSKCGELVS 272
Query: 199 AEAFIREMPIEAEWSVWGALLNA 221
+ MP ++ W A ++A
Sbjct: 273 SRRIFDGMP-SRDFITWNAAISA 294
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW ++I G+ G +A+ F M + +P++ + LS+C++I+AL
Sbjct: 376 MGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGK-KPDQLSFACGLSSCATIAALQV 434
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + L+ +V NA+I MY KCG + A VFN + + D+ISW+++I G A
Sbjct: 435 GNQLHQVVVKGGYLNYL-VVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYA 493
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G++AL+LF M G+ PD+VTFI ++SAC+H G+VD GL LFK MS VY I P
Sbjct: 494 INGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLA 553
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR G L+EA +R M ++A VWGALL ACR H N E+ +L
Sbjct: 554 EHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLSE 613
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN A A+RW + ++R + K+ GCSW+EV +
Sbjct: 614 FEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWVEVRNQV 665
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM------------------EKTKEAEP-- 40
MP+RD VSWTTMI GY G +EA + EM K EA
Sbjct: 252 MPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFF 311
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQ 99
+E +V+ + I+ + ++ + + ++V N +I+ Y + G + A++
Sbjct: 312 DEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQMDRAVK 371
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F + +D++SW+++I+G +NG AL+ F+LM G PD ++F +S+C+
Sbjct: 372 IFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSCATIAA 431
Query: 160 VDQG----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ G ++ K Y +V ++ MY + G + EA
Sbjct: 432 LQVGNQLHQVVVKGGYLNYLVVNNA-----LITMYAKCGRILEA 470
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 36/261 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKT----------------KEAEPNEAT 44
MP+RD+ SWT MI Y G E+A +F + + K+ NEA
Sbjct: 63 MPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAK 122
Query: 45 LV-------NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGI 96
+ N++S S ++ + + + + ++ ++V N +++ +++ GD+
Sbjct: 123 RLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDS 182
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A + F +++SW T++SG A NG ++ +LF M + V++ A+ISA
Sbjct: 183 AWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VSWNAMISAYVQ 238
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWS 213
+D+ LF+ M + + +++ Y R G L+EA + EMP I A+ +
Sbjct: 239 RCEIDEASRLFEEMPE-----RDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTA 293
Query: 214 VWGALLNACRIHRNDEMFDPI 234
+ + ++ FD I
Sbjct: 294 MISGYIQCNKVDEARRFFDEI 314
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 137/301 (45%), Gaps = 47/301 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW TM+ GY G +EA +F M + + + +++ + +
Sbjct: 32 MPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRR-----DLFSWTLMITCYTRNGEVEK 86
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + Y V+ NA+I+ YVK G V A ++F+ + K++ISW+++++G
Sbjct: 87 ARELFDSLPCSYRKGVA--CWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYT 144
Query: 121 MNGCGRQALQLFSLM----------IINGVF-----------------PDDVTFIALISA 153
N R L+ F+ M +++G P+ V+++ ++S
Sbjct: 145 QNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSG 204
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
+ G + + LF M + IV + ++ Y + ++EA EMP E +
Sbjct: 205 FARNGNILESRRLFDQMPS-RNIVS----WNAMISAYVQRCEIDEASRLFEEMP-ERDSV 258
Query: 214 VWGALLNA-CRIHRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFAGADRWEDANKIRDE 271
W ++N RI + DE +EL+N+ ++G M + + ++ ++A + DE
Sbjct: 259 SWTTMINGYVRIGKLDEA-----RELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDE 313
Query: 272 I 272
I
Sbjct: 314 I 314
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 110/247 (44%), Gaps = 45/247 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW M+ G+ + G + A FQE +K PN + V +LS + +
Sbjct: 159 MDERDVVSWNLMVDGFIQVGDLDSAWKFFQETQK-----PNVVSWVTMLSGFARNGNILE 213
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + +R N+V NA+I+ YV+ ++ A ++F + +D +SW+T+I+G
Sbjct: 214 SRRLFDQMPSR------NIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGY 267
Query: 120 AMNGCGRQALQLFSLM----------IINGVFP-----------------DDVTFIALIS 152
G +A +L + M +I+G D V + A+I+
Sbjct: 268 VRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIA 327
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
+H G +++ L L K M + T ++ Y + G ++ A EM E +
Sbjct: 328 GYAHHGRINEALCLSKRMVNKDMVTWNT-----MISCYAQVGQMDRAVKIFEEMG-ERDL 381
Query: 213 SVWGALL 219
W +L+
Sbjct: 382 VSWNSLI 388
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++I++Y K G + A +F+ + ++++SW+T++SG NG +A +LF +M +F
Sbjct: 10 NSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMPRRDLF 69
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC---VVDMYGRAGLLEE 198
++ +I+ + G V++ LF ++ Y + AC ++ Y + G + E
Sbjct: 70 ----SWTLMITCYTRNGEVEKARELFDSLPCSYR-----KGVACWNAMISGYVKKGRVNE 120
Query: 199 AEAFIREMPIEAEWSVWGALL 219
A+ EMP++ S W ++L
Sbjct: 121 AKRLFDEMPVKNLIS-WNSML 140
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 179/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+V+WT+M+ GY++ ++A+ F++M + +E TLV +SAC+ + +
Sbjct: 201 LPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVT-DEITLVGAISACAQLGVSGY 259
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++ S+R+ + VG+A+I+MY KCG+V A VF + ++ S+S++I G
Sbjct: 260 ADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGF 319
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G R A++LF M+ NG+ P+ VTF+ L +ACSH G+V+QG LF AM Y + P
Sbjct: 320 AVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPT 379
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYAC+ D+ GRAG LE+A ++ MP+E VWGALL A IH N ++ + + L
Sbjct: 380 ADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLF 439
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ ++G + L+S T+A A +W+D +++R +R L+K GCSW+E I
Sbjct: 440 ELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGI 492
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 98/232 (42%), Gaps = 41/232 (17%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
++ +I YA G ++ ++ M + L ++L S S L ++
Sbjct: 80 YSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFG 139
Query: 67 YISTRYDLSVSNLVGNAVINMYVK-------------------------------CGDVG 95
+++ Y VGN +I+MYVK GD+
Sbjct: 140 FVNDLY-------VGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMD 192
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
A ++F L KDM++W+++++G + N ++ALQ F M GV D++T + ISAC+
Sbjct: 193 SACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACA 252
Query: 156 HGGLVDQG-LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
G+ I A S+ + + ++DMY + G +EEA + M
Sbjct: 253 QLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGM 304
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 186/294 (63%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP ++VVSW+ MI YA+ G EA+ +F+EM T ++ PN T+V+VL AC++ +AL
Sbjct: 235 MPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALE 294
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+YI R S+ ++ +A+I MY +CG + +F+ + KD++ W+++IS
Sbjct: 295 QGKLIHAYILRRGLDSILPVI-SALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSY 353
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G GR+A+++F MI +G P ++FI+++ ACSH GLV++G LF++M + I P
Sbjct: 354 GLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPS 413
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA I ++ IE VWG+LL ACRIH + E+ + + L
Sbjct: 414 VEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLF 473
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A+ W++ +++ + L+K G SWIEV I+
Sbjct: 474 KLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIY 527
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 142/319 (44%), Gaps = 57/319 (17%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISAL 58
KR + W + A G + + ++ M + T +L AC + +S L
Sbjct: 132 KRTIYVWNALFRALALAGRGNDVLELYPRMNMMG-VSSDRFTYTYLLKACVASECLVSFL 190
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H++I R+ V +++MY + G V A VF+ + K+++SWS +I+
Sbjct: 191 QKGKEIHAHI-LRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIAC 249
Query: 119 LAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQG-----LILFKAMS 171
A NG +AL+LF M++N P+ VT ++++ AC+ ++QG IL + +
Sbjct: 250 YAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLD 309
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH---RN- 227
++ ++ + ++ MY R G LE + M + + +W +L+++ +H R
Sbjct: 310 SILPVI------SALITMYARCGKLESGQLIFDRMH-KKDVVLWNSLISSYGLHGYGRKA 362
Query: 228 --------DEMFDP-----------------------IRQELVNKKGV--SVGTFALMSN 254
D F P + + +V + G+ SV +A M +
Sbjct: 363 IKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVD 422
Query: 255 TFAGADRWEDANKIRDEIR 273
A+R ++A KI +++R
Sbjct: 423 LLGRANRLDEAAKIIEDLR 441
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
+ E+ P + T ++ + + ++LS VH + + +INM+ + V
Sbjct: 62 SHESNPTQQTCELLILSAARRNSLSDALDVHQLL-VDGGFDQDPFLATKLINMFSELDTV 120
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A +VF+ + + W+ + LA+ G G L+L+ M + GV D T+ L+ AC
Sbjct: 121 DNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKAC 180
Query: 155 SHGGLVDQGLILF--KAMSTVYEIV-----PQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ + L+ F K I+ ++DMY R G + A A EMP
Sbjct: 181 ----VASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMP 236
Query: 208 IEAEWSVWGALLNAC 222
++ S W A++ AC
Sbjct: 237 VKNVVS-WSAMI-AC 249
>gi|358345892|ref|XP_003637008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502943|gb|AES84146.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/289 (40%), Positives = 180/289 (62%), Gaps = 17/289 (5%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
PK RDVV+WT MIGGYA+ G A+ +F EM K PN+ T+ VL AC+ ++AL
Sbjct: 245 PKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALK 304
Query: 60 FGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
FG+ +H+Y+ R + L V N +I+MY K GDV A VF+ ++ ++ +SW+++++G
Sbjct: 305 FGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTG 364
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
M+G AL L D +TF+ ++ ACSH G+VD+G+ LF MS + + P
Sbjct: 365 YGMHG---AALVL-----------DGITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDP 410
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HYAC+ D++GRAG L EA I +M +E VW ALL+ACR H N+E+ + ++L
Sbjct: 411 GVEHYACMADLFGRAGRLCEATRLINDMSMEPTPVVWIALLSACRTHSNEELAEFAAKKL 470
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ K + GT+ L+SN +A A RW+D +IR ++R G+KK+ G SW++
Sbjct: 471 LELKADNDGTYTLLSNIYANARRWKDVARIRYLMKRTGIKKRPGWSWVK 519
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 151/304 (49%), Gaps = 40/304 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+W+++I GYA+RGF EA+ VF++M + PN TL+++LSAC+S+ AL G+
Sbjct: 139 DVVTWSSVISGYAQRGFGCEAMDVFRQMCGCR-CRPNVVTLMSLLSACASVGALLHGKET 197
Query: 65 HSY-----ISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVI 116
H Y + ++ +L V NA+I+MY KC + +A +F+ + K D+++W+ +I
Sbjct: 198 HCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMI 257
Query: 117 SGLAMNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
G A +G ALQLFS M I N + P+D T ++ AC+ + G + +
Sbjct: 258 GGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRS 317
Query: 175 EIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-------- 225
I A C++DMY ++G ++ A+ M S W +LL +H
Sbjct: 318 RIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVS-WTSLLTGYGMHGAALVLDG 376
Query: 226 -----------------RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268
R ++F + ++ V GV +A M++ F A R +A ++
Sbjct: 377 ITFLVVLYACSHSGMVDRGIDLFYRMSKDFVVDPGVE--HYACMADLFGRAGRLCEATRL 434
Query: 269 RDEI 272
+++
Sbjct: 435 INDM 438
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
VSW +++ Y+ +AV +F+EM P+ +VN+L L F
Sbjct: 24 VSWNSIVSVYSHCFVPNDAVFLFREMTVGYGILPDTVGVVNILPVSG---FLGF------ 74
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
VGNA+++MY KCG + A +VF + +KD+++W+ +++G + NG
Sbjct: 75 ------------FVGNALVDMYAKCGKMEDASKVFERMRFKDVVTWNAMVTGYSQNGRFE 122
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
AL LF M + D VT+ ++IS + G + + +F+ M
Sbjct: 123 DALSLFGKMREEKIELDVVTWSSVISGYAQRGFGCEAMDVFRQM 166
>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 548
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 180/288 (62%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V SW MI +E G ++V+VF +M + P+ AT+ ++SAC+ + LS
Sbjct: 231 MPQRNVNSWNMMISACSEVGLWADSVAVFNQM-RFMSFRPDAATMAVLMSACAQLGFLSV 289
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V+ + + + ++ V N++++M+ KCG A +F + KD++S++ ++S LA
Sbjct: 290 ARQVYGLL-RKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALA 348
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G+ AL+LF MI G+ PD VTF+ ++SAC+H GLVD G F+ M T Y I
Sbjct: 349 HHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSA 408
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+YGR GL+EEA F++ MP++ +WGALLNACR H N ++ + +EL+
Sbjct: 409 DHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIR 468
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++ G + L+SNT A + +W+ +R +R G+ K TG SW+EV
Sbjct: 469 IEPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVEV 516
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 86/200 (43%), Gaps = 40/200 (20%)
Query: 5 DVVSWTTMIGGYAERG---FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
+V WT + YA+ EA +F M ++ PN T+ +VL + S + A
Sbjct: 69 NVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGP-RPNGFTVSSVLKSLSKLRAAHQV 127
Query: 62 QYVHSYI------------STRYDLSVSNL-------------------VGNAVINMYVK 90
VH ++ +T D S NL VGNA+++ YVK
Sbjct: 128 CQVHGFLVKAGLASSLHVGATLLD-SYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVK 186
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
GDV A QVF+ + +D ISW+T++SG G A LF M V ++ +
Sbjct: 187 AGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRNV----NSWNMM 242
Query: 151 ISACSHGGLVDQGLILFKAM 170
ISACS GL + +F M
Sbjct: 243 ISACSEVGLWADSVAVFNQM 262
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 175/289 (60%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V++WT MI G A+ GF EE + +F +M K++ EP + ++ACS + +L
Sbjct: 383 MPERNVLTWTVMISGLAQNGFGEEGLKLFNQM-KSEGLEPCDYAFAGAITACSVLGSLDN 441
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
GQ +HS I +D +S GNA+I MY +CG V A VF + Y D +SW+ +I+ L
Sbjct: 442 GQQIHSQVIRLGHDSGLS--AGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAAL 499
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +A++LF M+ + PD +TF+ +++AC+H GL+ +G F M T Y I P
Sbjct: 500 AQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPG 559
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HYA ++D+ RAG+ +A++ I+ MP EA +W ALL CRIH N E+ L+
Sbjct: 560 EDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLL 619
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
GT+ ++SN +A +W++ ++R +R G+KK+ GCSW+EV
Sbjct: 620 ELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEV 668
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 125/283 (44%), Gaps = 65/283 (22%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS----ISALSFGQ 62
V+W MI GY RG EEA F+ M E +E T +++SAC S + + G+
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQE-DEYTYTSLISACGSCNEKMGMFNCGR 307
Query: 63 YVHSYI-------STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
VH YI S + LSV+N A+I Y K + A +VF+ + +D+ISW+ V
Sbjct: 308 QVHGYILRTVVEPSHHFVLSVNN----ALITFYTKYDRMIEARRVFDKMPVRDIISWNAV 363
Query: 116 -------------------------------ISGLAMNGCGRQALQLFSLMIINGVFPDD 144
ISGLA NG G + L+LF+ M G+ P D
Sbjct: 364 LSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCD 423
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA------CVVDMYGRAGLLEE 198
F I+ACS G +D G ++ V + H + ++ MY R G++E
Sbjct: 424 YAFAGAITACSVLGSLDNG-------QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVES 476
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQE 237
AE+ MP S W A++ A H + E+F+ + +E
Sbjct: 477 AESVFLTMPYVDSVS-WNAMIAALAQHGHGVKAIELFEQMMKE 518
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 135/332 (40%), Gaps = 70/332 (21%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQ 62
RD VS+ MI Y+ A+++F +M++ P+ T +VLSA S I+ Q
Sbjct: 102 RDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFL-PDPFTFSSVLSALSLIADEERHCQ 160
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCG------------------------------ 92
+H + L + + V NA+++ YV C
Sbjct: 161 MLHCEVIKLGTLLIPS-VTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPS 219
Query: 93 ------------DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140
D+ A ++ + L Y ++W+ +ISG G +A F M G+
Sbjct: 220 WTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGI 279
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-----EIVPQTQHYACVVD-----MY 190
D+ T+ +LISAC G ++ + +F V+ +V + H+ V+ Y
Sbjct: 280 QEDEYTYTSLISAC---GSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFY 336
Query: 191 GRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVSV 246
+ + EA +MP+ S W A+L NA RI + +F + + +V
Sbjct: 337 TKYDRMIEARRVFDKMPVRDIIS-WNAVLSGYVNAQRIEEANSIFSEMPER-------NV 388
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278
T+ +M + A E+ K+ ++++ GL+
Sbjct: 389 LTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH++I T + + N +IN+Y K ++ A ++F+ + D+++ +T++S + +G
Sbjct: 27 VHAHILTS-GFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSG 85
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ A QLF+ + D V++ A+I+A SHG L LF M Y +P +
Sbjct: 86 NVKLAQQLFNATPL--TIRDTVSYNAMITAYSHGNDGHAALNLFVQMKR-YGFLPDPFTF 142
Query: 184 ACVV 187
+ V+
Sbjct: 143 SSVL 146
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 184/291 (63%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW+ M+ G EA+ VF M + +E P+ LV+VL AC+ + A+
Sbjct: 171 MPERNLVSWSAMVDACVRAGEFGEALWVFDRMMR-EEFRPDVVVLVSVLKACAHLGAVER 229
Query: 61 GQYVHSYIST-RYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++VH Y+ T + NL + A+++MY KCG + A QVF+ + +D++ W+ +I G
Sbjct: 230 GRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG 289
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAMNG G +AL+LF M+ G P++ TFIA++ AC+H G VD+G +FK+M Y I P
Sbjct: 290 LAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKP 348
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q +HY C+ D+ GRAG +EEAEA + +MP+E S WGAL+++C++H + + + + + L
Sbjct: 349 QREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRL 408
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + ++ N +A RWE+A IR + G KK+TG S+IE+N
Sbjct: 409 IELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELN 459
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ Y K GD+G A +VF + ++++SWS ++ G +AL +F M+
Sbjct: 149 NTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFR 208
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVY------EIVPQTQHYACVVDMYGRAGL 195
PD V ++++ AC+H G V++G + + + T ++ +T +VDMY + G
Sbjct: 209 PDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLET----ALVDMYCKCGC 264
Query: 196 LEEA 199
+E+A
Sbjct: 265 MEDA 268
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 177/286 (61%), Gaps = 4/286 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V W +M+ GYA+ G EEA+ +F+ M + P T +++ A ++S L G+ +
Sbjct: 552 DAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRLGKQL 610
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+Y I R++ ++ + +++I+MY KCG+V IA +VFN + D++SW+ +I G A++G
Sbjct: 611 HAYLIRARFNDNI--FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 668
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A LF M + V P+ +TF+A+++ACSH GLVD G F +MS Y VP +H
Sbjct: 669 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 728
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
A + D GRAG L+EA FI EM I+ SVW LL ACR+H+N + + + +++ +
Sbjct: 729 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP 788
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S+G+ ++SN ++ + RW +A ++R +R G+KK+ CSWIEV
Sbjct: 789 KSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 834
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW T+I G AE +EA+S+ +EM + P+ TL VL + + +
Sbjct: 447 MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIKR 505
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH Y I +D V VG+++I+MY C + +++VF+ + D + W+++++G
Sbjct: 506 GMVVHGYAIKNGFDNDV--FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGY 563
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
A NG +AL +F M+ GV P VTF +LI A + L+ G
Sbjct: 564 AQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLG 607
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHS 66
SW I A +G A+S+F +M + + A+L L +C+ + + +H+
Sbjct: 331 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 390
Query: 67 YISTRYDLSVSNLVGNAVINMYVK-------------CGDVGIAI-------QVFNMLAY 106
++ R NA++N+ +K G+ G+ +VF+ +
Sbjct: 391 -LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 449
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+D +SW+T+I G A + ++AL + M +G PD T ++ + + +G+++
Sbjct: 450 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 509
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/291 (39%), Positives = 184/291 (63%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW+ M+ G EA+ VF M + +E P+ LV+VL AC+ + A+
Sbjct: 171 MPERNLVSWSAMVDACVRAGEFGEALWVFDRMMR-EEFRPDVVVLVSVLKACAHLGAVER 229
Query: 61 GQYVHSYIST-RYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G++VH Y+ T + NL + A+++MY KCG + A QVF+ + +D++ W+ +I G
Sbjct: 230 GRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG 289
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAMNG G +AL+LF M+ G P++ TFIA++ AC+H G VD+G +FK+M Y I P
Sbjct: 290 LAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-YGIKP 348
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q +HY C+ D+ GRAG +EEAEA + +MP+E S WGAL+++C++H + + + + + L
Sbjct: 349 QREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGERVGKRL 408
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + ++ N +A RWE+A IR + G KK+TG S+IE+N
Sbjct: 409 IELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELN 459
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ Y K GD+G A +VF + ++++SWS ++ G +AL +F M+
Sbjct: 149 NTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFR 208
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVY------EIVPQTQHYACVVDMYGRAGL 195
PD V ++++ AC+H G V++G + + + T ++ +T +VDMY + G
Sbjct: 209 PDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLET----ALVDMYCKCGC 264
Query: 196 LEEA 199
+E+A
Sbjct: 265 MEDA 268
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 175/289 (60%), Gaps = 5/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW ++IG YA+ G C A+ VF+EM+ + EP E TLV+VL AC+ I L
Sbjct: 248 MPGRDAVSWNSLIGSYAKLGQCARALKVFREMQDSG-VEPTELTLVSVLGACTEIGELEL 306
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+S++ L+ VGNA+++MY KCG + +A QVF ++ +D+ W+ +I GL+
Sbjct: 307 GKGVHGYLSSKGVLA-DGYVGNALVDMYAKCGSLELARQVFESMSTRDITCWNAMIVGLS 365
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+AL+LF++M + PD VTF+ ++ CSH GLVD+G + F++M+ Y+IVP
Sbjct: 366 VHGYSREALELFNVMRVE---PDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGV 422
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM R G + EA + MP++A +W +L ACR+H + + EL
Sbjct: 423 KHYGCMVDMLCRCGKVAEAYQMLNYMPLKANSVLWKMVLAACRLHGHIHHANKAFHELHQ 482
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G +MS+ +A RW+D +R ++ K S ++V
Sbjct: 483 LMPIDDGDVIMMSSIYAEGKRWDDVEHLRTKVIEPSFWKHGAHSQVDVT 531
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 47/241 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW ++ + + G A V QEM +
Sbjct: 186 MPARNAVSWNALVAAHGDVGDSRGAERVSQEMPER------------------------- 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
SVS NA I + + GD+ A +VF + +D +SW+++I A
Sbjct: 221 --------------SVSWW--NAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYA 264
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL++F M +GV P ++T ++++ AC+ G ++ G + +S+ ++
Sbjct: 265 KLGQCARALKVFREMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSS-KGVLADG 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPIRQ 236
+VDMY + G LE A M + + W A++ +H E+F+ +R
Sbjct: 324 YVGNALVDMYAKCGSLELARQVFESMSTR-DITCWNAMIVGLSVHGYSREALELFNVMRV 382
Query: 237 E 237
E
Sbjct: 383 E 383
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 183/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD++SWT MI G+ ++GF EEA++ F+EM+ + P+ +++ ++AC+++ ALSF
Sbjct: 151 MPDRDLISWTAMITGFVKKGFHEEALAWFREMQISG-VNPDYVAIISAVAACTNLGALSF 209
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A
Sbjct: 210 GLWVHRYVLSQ-DFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFA 268
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++G F+ M Y I P+
Sbjct: 269 ANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRI 328
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A + MP++ V G+LL ACR H N + + + + +
Sbjct: 329 EHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKYIT 388
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 389 DLDVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEID 438
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
+VSWT+ I + G EAV F +M + EPN T + +LSAC + + S G
Sbjct: 21 IVSWTSRITLLSRDGRLAEAVREFSDM-RLAGIEPNHITFIALLSACGNFPSGSEGLGYL 79
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVKC------------------------------- 91
+H Y + + L S+ +VG A++ MY K
Sbjct: 80 LHGY-ACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRN 138
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A+ VF+ + +D+ISW+ +I+G G +AL F M I+GV PD V I+ +
Sbjct: 139 GQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIISAV 198
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + + + + + ++D+Y R G +E A +M
Sbjct: 199 AACTNLGALSFGLWVHRYVLS-QDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKM 252
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
IQ N + ++SW++ I+ L+ +G +A++ FS M + G+ P+ +TFIAL+SAC +
Sbjct: 10 IQKLNQSTSETIVSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNF 69
Query: 158 GLVDQGL 164
+GL
Sbjct: 70 PSGSEGL 76
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 23/289 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW TMIG E +P+ T+ VL AC+S+SAL G+
Sbjct: 416 KDIISWNTMIG----------------------ELKPDSRTMACVLPACASLSALERGKE 453
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI R S V NA++++YVKCG +G+A +F+M+ KD++SW+ +I+G M+G
Sbjct: 454 IHGYI-LRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ F+ M G+ PD+V+FI+++ ACSH GL++QG F M + I P+ +HY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R G L +A FI +PI + ++WGALL CR + + E+ + + + + +
Sbjct: 573 ACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP 632
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A++WE+ ++R++I + GL+K GCSWIE+ +
Sbjct: 633 ENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 116/213 (54%), Gaps = 17/213 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E + ++++M + + AT+++VL C++ LS G+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKA 272
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS I + ++ ++ N +++MY KCGD+ A++VF + ++++SW+++I+G +
Sbjct: 273 VHSLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---- 178
G A++L M GV D V +++ AC+ G +D G V++ +
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNM 383
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
++ + C ++DMY + G +E A + M ++
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK 416
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT+MI GY G + A+ + Q+MEK + + + + ++L AC+ +L
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLDVVAITSILHACARSGSLDN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++ + V NA+++MY KCG + A VF+ + KD+ISW+T+I L
Sbjct: 371 GKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELK 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYE 175
PD T ++ AC+ +++ G IL S+
Sbjct: 430 ---------------------PDSRTMACVLPACASLSALERGKEIHGYILRNGYSS--- 465
Query: 176 IVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+H A +VD+Y + G+L A +P + W+V
Sbjct: 466 ----DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 123/293 (41%), Gaps = 61/293 (20%)
Query: 36 KEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV- 94
K++E T +VL C+ + + + G+ VHS I + + V +G +++ Y CGD+
Sbjct: 93 KKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSN-SVGVDEALGLKLVSFYATCGDLK 151
Query: 95 -------------------------------------------GI-------AIQVFNML 104
GI A ++F+ L
Sbjct: 152 EGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKL 211
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
+D+ISW+++ISG NG + L ++ M+ G+ D T I+++ C++ G + G
Sbjct: 212 CDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGK 271
Query: 165 ILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-C 222
+ A+ + +E + ++DMY + G L+ A +M E W +++
Sbjct: 272 AVHSLAIKSSFE--RRINFSNTLLDMYSKCGDLDGALRVFEKMG-ERNVVSWTSMIAGYT 328
Query: 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMS--NTFAGADRWEDANKIRDEIR 273
R R+D ++Q + K+GV + A+ S + A + ++ + D I+
Sbjct: 329 RDGRSDGAIKLLQQ--MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSWT MI GY G+ EA++ F EM + EP+E + +++L ACS L
Sbjct: 493 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM-RDAGIEPDEVSFISILYACSHSGLLEQ 551
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISG 118
G + +++ ++++ + G++ A + L D W ++ G
Sbjct: 552 GWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 183/297 (61%), Gaps = 12/297 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-----EPNEATLVNVLSACSSI 55
MP RDVVSWTTM+ G+A G A+ F M + K+ +PNEAT V+VLS+C+ +
Sbjct: 176 MPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLDCLVKPNEATYVSVLSSCTEL 235
Query: 56 S---ALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
AL FG+ VH YI + DL V VG ++IN+Y K G + + VF ++ +++ +
Sbjct: 236 EGKGALDFGRQVHGYIVVKGVDLGV--FVGTSLINLYGKMGCLNYSASVFRVMVVREVCT 293
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ +IS LA NG ++AL LF M + G+ P+ +TF+A+++AC+ GG V +GL LF++MS
Sbjct: 294 WNAMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACARGGFVSEGLELFESMS 353
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
+ +++VP +HY CVVD+ GRAG ++EA IR MP + +V GA L ACRIH E+
Sbjct: 354 SKFQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVLGAFLGACRIHGAIELG 413
Query: 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ I +++ + G + L+S+ +A +RW A +R+EI G+ K S + +
Sbjct: 414 EEI-AKMLKLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIMEAGIHKIPAFSMVHL 469
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-- 139
NA+IN + G++ A+ VF + Y+D++SW+T+++G A++G A++ F M+ +
Sbjct: 154 NAMINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDV 213
Query: 140 ----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV----VDMYG 191
V P++ T+++++S+C+ L +G + F Y +V V +++YG
Sbjct: 214 LDCLVKPNEATYVSVLSSCTE--LEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYG 271
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ G L + + R M + E W A++++
Sbjct: 272 KMGCLNYSASVFRVMVVR-EVCTWNAMISS 300
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SWT +I G + G+ E+A+ F +M+++ A + +++ VL+AC+ + AL+
Sbjct: 187 MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAA-DYVSIIAVLAACADLGALTL 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH ++ + + + + N++I+MY +CG + A QVF +A + ++SW+++I G A
Sbjct: 246 GLWVHRFVMPQ-EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++L+ F M G PD V++ ++ACSH GLV++GL LF M +V++I P+
Sbjct: 305 VNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRI 364
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG LE+A I EMP++ V G+LL ACR H + + + + + L
Sbjct: 365 EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK 424
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L+SN +A +W+ AN +R ++ G++KK G S +E++
Sbjct: 425 LDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEID 473
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 51/317 (16%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF--GQY 63
+V WT+ + Y G EA + F M + EPN T + +LSAC+ + SF
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRM-RLAGVEPNHITFITLLSACADFPSESFFFASS 115
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVKC------------------------------- 91
+H Y + +Y L + +VG A+I+MY KC
Sbjct: 116 LHGY-ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ +AIQ+F+ + +D ISW+ +I+GL +G QAL+ F M +GV D V+ IA++
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+ G + GL + + + E + ++DMY R G +E A +M
Sbjct: 235 AACADLGALTLGLWVHRFVMP-QEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTL 293
Query: 212 WSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA-------- 259
S W +++ ++ + E F +++E GVS T AL + + AG
Sbjct: 294 VS-WNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSY-TGALTACSHAGLVNKGLELF 351
Query: 260 DRWEDANKIRDEIRRMG 276
D + +KI I G
Sbjct: 352 DNMKSVHKITPRIEHYG 368
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
FN + ++ W++ ++ NG +A F+ M + GV P+ +TFI L+SAC+
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 156 --------HG-----GLVDQGLILFKAMSTVYEIVPQTQH---------------YACVV 187
HG GL +++ A+ +Y Q H + ++
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + R G +E A EMP S W AL+N H
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAIS-WTALINGLLKH 205
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 180/289 (62%), Gaps = 10/289 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP+R++VSW +M+ G+ + G EEA +F EM N +++ + C + AL+
Sbjct: 1 MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWN--SMLACYAQCGKPNEALA 58
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + V+++VG A+++MY KCG + +A QVFN + KD+++W+T+I+G+
Sbjct: 59 LFDQMQA-------VGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGM 111
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A+ G ++A QLF M GV P+D+TF+A++SACSH G+VD+G L MS+ Y I P+
Sbjct: 112 AILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPK 171
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY CV+D+ RAGLLEEA I MP+E GALL CRIH N E+ + + + L+
Sbjct: 172 VEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLI 231
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
N + G + L+SN +A A +W+DA K+R+ ++ G+ K G S IE+
Sbjct: 232 NLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIEL 280
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 182/290 (62%), Gaps = 4/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD SW++MI YA+ +EA+ +++EM P+ TLV+V+SACS + AL+ G
Sbjct: 83 RDAFSWSSMISAYAKSRRSKEALELWREMHAASII-PDCITLVSVVSACSDLGALAVGAE 141
Query: 64 VHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH ++ S R +L + +G A+I+MY KCGD+ A +VF+ + KD+ +WS++I GLA +
Sbjct: 142 VHRFVESNRIELDLK--LGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANH 199
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G ++L LFS MI G+ P+ VTF+ ++ AC+H GLV +G F++M+ V+ I P +H
Sbjct: 200 GLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEH 259
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+VD+ GR+G +EEA IR M E + +W ALL ACRIH+N E+ + +L
Sbjct: 260 YGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLD 319
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A+ WE ++R IRR +++ G S IE + I
Sbjct: 320 PLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKI 369
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 20/236 (8%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNV-LSACSSISALSFGQYVHSYISTRYDL 74
YA+ G + A F E A + L NV L+A S S ++ + V + R
Sbjct: 2 YAKAGRVDLARDAFDE------APLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMR--- 52
Query: 75 SVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
+LV N +I+ Y G+VG+A ++F+ +D SWS++IS A + ++AL+L+
Sbjct: 53 ---DLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWR 109
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193
M + PD +T ++++SACS G + G + + + + I + ++DMY +
Sbjct: 110 EMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVES-NRIELDLKLGTALIDMYAKC 168
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFDPIRQELVNKKGVS 245
G +E A+ MP E + W +++ N H + +F + E + GV+
Sbjct: 169 GDIESAQRVFDRMP-EKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVT 223
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 179/287 (62%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V+WT MI GYA+ G +E++++F+EME EP+ AT+V V+SA S I +
Sbjct: 236 MPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAG-IEPDAATMVGVISAASQIGSTEL 294
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+V SY+ + + ++ V A+++M+ KCG+V A+ F +A D ++ +ISGLA
Sbjct: 295 AGWVGSYVDKKR-IERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLA 353
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G + ALQ+F M V+PD +TF+ +++ACSH GLVD+GL ++AM Y + +
Sbjct: 354 AHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRA 413
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYACVVDM GRAG LEEA ++ MP+ GALL+AC+ H N E+ + + +L
Sbjct: 414 DHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFE 473
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + ++SN +A ++WE+A +IR +R K+ G SW+E
Sbjct: 474 LEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTRLPFKQPGSSWVE 520
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 11/202 (5%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VS+ +++ +A +A S+F M + N +V V + +S + V
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYV-----NAGDVSSARRV 201
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ TR S S L+ Y KCG + A +VF+ + K++++W+ +I+G A +G
Sbjct: 202 FDQMPTRDSTSWSVLIVG-----YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGV 256
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+++L LF M G+ PD T + +ISA S G + + + I +
Sbjct: 257 PKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDK-KRIERNDKVLT 315
Query: 185 CVVDMYGRAGLLEEAEAFIREM 206
+VDM+ + G ++EA + RE+
Sbjct: 316 ALVDMHAKCGNVDEALSAFREI 337
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ +L L+A +S+ L G +H+ L V NA++++Y KC D+ A
Sbjct: 79 PDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCDDLPAAHT 138
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+A D +S+++++ A A LF M V++ A++ + G
Sbjct: 139 ALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSR----TQVSWNAMVVVYVNAGD 194
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
V +F M T + ++ ++ Y + G + A MP + W A++
Sbjct: 195 VSSARRVFDQMPTR-----DSTSWSVLIVGYCKCGSMRSAREVFDRMPAK-NLVAWTAMI 248
Query: 220 N 220
N
Sbjct: 249 N 249
>gi|242054799|ref|XP_002456545.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
gi|241928520|gb|EES01665.1| hypothetical protein SORBIDRAFT_03g038140 [Sorghum bicolor]
Length = 640
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 178/292 (60%), Gaps = 5/292 (1%)
Query: 1 MP--KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSIS 56
MP RD+VSW ++ +A+ G +A+ +++ M + + EP+ T+V VLS+ + +
Sbjct: 219 MPLASRDLVSWNAVLSAHAQNGLAVDALELYRRMRSPEGSGVEPDAVTIVGVLSSAAHLG 278
Query: 57 ALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
A G V Y+ R +N+ + NA+IN + +CG + A Q+F+ + K ++SW+ +
Sbjct: 279 ARGVGFDVEHYVRQRIPGFHTNVQLCNALINFHARCGSLPRAQQLFDEMPRKSIVSWTAL 338
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I+G M+G G A+ LF M+ G+ PD+V +AL SACSH GL D+G F AM +VY+
Sbjct: 339 ITGHGMHGNGDVAVSLFERMVSEGIRPDNVAMVALFSACSHAGLYDEGRRYFSAMESVYK 398
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ P +HY C+VD+ GRAG LEEA I MP+ A+ +VWGALL AC+IH+N ++ +
Sbjct: 399 LRPTLEHYTCMVDLLGRAGRLEEARELISSMPMPADGAVWGALLGACKIHKNVDVGEEAF 458
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
++ + +VG + LMSN + + + ++R +R GLKK+ GCS++E
Sbjct: 459 TRVIELEPKNVGYYVLMSNIYTDTGQLDCVARVRAMMRERGLKKEPGCSYVE 510
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W+ + G E++++ + + + P+ L + +C+++S S +H+
Sbjct: 20 WSARVRTLTRLGRHRESLALLRHGDPSPP--PHALALPASVISCAALSLPSGVAQIHALA 77
Query: 69 STRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDM------ISWSTVISGLAM 121
+ R L ++ + +A++ Y + G + +A Q+ + + + ++++VISG A+
Sbjct: 78 AKRGLLPAADAYLLSALLTSYSRLGCLPLAHQLLDEMPLESTPHTTLRTAFNSVISGCAL 137
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+ + LF M V D VT +AL+ A +V Q A++ + +T
Sbjct: 138 HALPVASFALFRRMRAAAVGFDAVTLLALVPATPL-SVVPQ----VHALAARVGLATETS 192
Query: 182 HYACVVDMYGRAGLLEEAEA--FIREMPIEAEWSV-WGALLNA 221
C++ Y R G A A EMP+ + V W A+L+A
Sbjct: 193 VANCLMSTYARGGAFGAALARRVFDEMPLASRDLVSWNAVLSA 235
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 177/287 (61%), Gaps = 2/287 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSW MI GY G ++A+ +F++M+ E +P+ T++++LSAC+ L G
Sbjct: 239 PDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGE-KPDTVTMLSLLSACADSGDLDAG 297
Query: 62 QYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++S R+ + + +GNA+I+MY KCG + A++VF ++ K++ +W+++I GLA
Sbjct: 298 RRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLA 357
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +++ +F M+ V PD++TF+A+++ACSHGG+VD+G F M Y I P
Sbjct: 358 LHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNI 417
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM R GLL+EA FI M IE +W LL ACRIH E+ + +EL+
Sbjct: 418 KHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLK 477
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A W + +R + G+ K+ G + I+
Sbjct: 478 ARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 98/226 (43%), Gaps = 47/226 (20%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D V+W+ MI G+A RG A +F E
Sbjct: 178 REDAVAWSAMISGFARRGDIGAARELFDES------------------------------ 207
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
V +LV N +I Y K GD+ A ++F+ +D++SW+ +ISG
Sbjct: 208 ------------PVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 255
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQT 180
G +QA++LF M G PD VT ++L+SAC+ G +D G L +S + I P T
Sbjct: 256 CGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 181 QHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G + A E F + + S W +++ +H
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFW--LMQDKNVSTWNSIIGGLALH 359
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK------EAEPNEATLVNVLSACSS 54
+P D + T+I G A +AVS++ M + P++ T VL AC++
Sbjct: 68 IPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAA 127
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
+ A G VH+++ + V NA+I M+ GD+G A +F+ A +D ++WS
Sbjct: 128 MGAGETGAQVHAHV-VKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSA 186
Query: 115 VISGLAMNGCGRQALQLF 132
+ISG A G A +LF
Sbjct: 187 MISGFARRGDIGAARELF 204
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++V +W ++IGG A G E+++VF++M + +P+E T V VL+ACS +
Sbjct: 341 MQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN-VKPDEITFVAVLAACSHGGMVDK 399
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G S + RY + + +++M + G + A + + M + + W T++
Sbjct: 400 GHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGAC 459
Query: 120 AMNG 123
++G
Sbjct: 460 RIHG 463
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 187/294 (63%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K++V++WT M+ G ++ G+ E+A+ +F +M++ K A N TLV+++ C+ + +L+
Sbjct: 408 MGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVA-ANSVTLVSLVHCCAHLGSLTK 466
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM-LAYKDMISWSTVISGL 119
G+ VH++ R+ + ++ +A+I+MY KCG + A ++FN KD+I +++I G
Sbjct: 467 GRTVHAHF-IRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGY 525
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G GR AL ++S MI + P+ TF++L++ACSH GLV++G LF +M +++ PQ
Sbjct: 526 GMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQ 585
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD++ RAG LEEA+ +++MP + V ALL+ CR H+N M I L+
Sbjct: 586 HKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLI 645
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ ++ G + ++SN +A A +WE N IR +R G+KK G S IEV ++
Sbjct: 646 SLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVY 699
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 108/203 (53%), Gaps = 9/203 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R ++SW MI GY + G E+ ++F+ + ++ + TLV+++ CS S L
Sbjct: 307 MCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGF-DSGTLVSLIRGCSQTSDLEN 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS I R +L ++ A+++MY KCG + A VF + K++I+W+ ++ GL+
Sbjct: 366 GRILHSCI-IRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLS 424
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIV 177
NG AL+LF M V + VT ++L+ C+H G + +G + F ++ V
Sbjct: 425 QNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAV 484
Query: 178 PQTQHYACVVDMYGRAGLLEEAE 200
+ ++DMY + G + AE
Sbjct: 485 ITSA----LIDMYAKCGKIHSAE 503
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 109/221 (49%), Gaps = 8/221 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVV W ++IGGY ++G E++ +F EM P+ T+ N+L AC
Sbjct: 206 MPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGG-LRPSPVTMANLLKACGQSGLKKV 264
Query: 61 GQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G HSY+ L + N V ++++MY GD G A VF+ + + +ISW+ +ISG
Sbjct: 265 GMCAHSYVLA---LGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISG 321
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG ++ LF ++ +G D T ++LI CS ++ G IL + E+
Sbjct: 322 YVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCI-IRKELES 380
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+VDMY + G +++A M + W A+L
Sbjct: 381 HLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR 71
MI G+ E +F+ M + E N T + L AC+ + G + + R
Sbjct: 116 MIAGFLRNQQHMEVPRLFRMMGSC-DIEINSYTCMFALKACTDLLDDEVGMEI-IRAAVR 173
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
+ VG++++N VK G + A +VF+ + KD++ W+++I G G +++Q+
Sbjct: 174 RGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQM 233
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164
F MI G+ P VT L+ AC GL G+
Sbjct: 234 FLEMIGGGLRPSPVTMANLLKACGQSGLKKVGM 266
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 171/288 (59%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D +SW T++ GY + G EA+ + ME+ ++ PN+ T V+++ A S + AL
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ + + L + V +I++Y KCG + A+ +F + + W+ +I+ L
Sbjct: 445 GMKIHAKL-IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLG 503
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +ALQLF M+ V D +TF++L+SACSH GLVD+G F M Y I P
Sbjct: 504 IHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSL 563
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE+A +R MPI+ + S+WGALL+AC+I+ N E+ L+
Sbjct: 564 KHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLE 623
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+VG + L+SN +A ++WE K+R R GL+K G S + V
Sbjct: 624 VDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 15/292 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW ++I Y + A+ F+ M+ P+ T+V++ S S +S
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ-LGGIRPDLLTVVSLTSIFSQLSDQRI 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ R L ++GNA++NMY K G + A VF+ L KD ISW+T+++G
Sbjct: 342 SRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYT 401
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 176
NG +A+ +++M P+ T++++I A SH G + QG+ + + S ++
Sbjct: 402 QNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIR 235
T C++D+YG+ G LE+A + E+P + W A++ + IH R +E +
Sbjct: 462 FVAT----CLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFK 516
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR-MGLK---KKTGC 283
L + TF + + + + ++ K D +++ G+K K GC
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV SW MI G+ + G A+ V M K + + + T+ ++L C+ +
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KGEGVKMDTITVASILPVCAQSDDVIN 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ ++ L V NA+INMY K G + A VF+ + +D++SW+++I+
Sbjct: 241 GVLIHLHV-LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYE 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-------GLILFKAMSTV 173
N AL+ F M + G+ PD +T ++L S S L DQ G ++ +
Sbjct: 300 QNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDK 357
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +V+MY + G + A ++P + S W L+
Sbjct: 358 DVVIGNA-----LVNMYAKLGYMNCAHTVFDQLPRKDTIS-WNTLVTG 399
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQE---MEKTKEAEPNEATLVNVLSACSSISALS 59
K+++ SW ++I Y G EA++ + M P+ T +L AC S L
Sbjct: 82 KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LV 138
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH + + V +++++Y + G + +A +VF + KD+ SW+ +ISG
Sbjct: 139 DGKKVHCCV-FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG AL + + M GV D +T +++ C+ V G +L + +
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSD 256
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY + G L++A+ +M + S W +++ A
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS-WNSIIAA 297
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL----QLFSL 134
++ +IN+YV GD+ ++ F+ + K++ SW+++IS G +A+ QLFS+
Sbjct: 55 VLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSM 114
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGR 192
+ PD TF ++ AC LVD K V+++ + + A +V +Y R
Sbjct: 115 CGGGHLRPDFYTFPPILKACV--SLVDGK----KVHCCVFKMGFEDDVFVAASLVHLYSR 168
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G+L+ A +MP++ S W A+++
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGS-WNAMISG 196
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 169/289 (58%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSWT+MI Y G +A+ VF M++T EP+ TLV++LSA S+S L G+
Sbjct: 425 KDVVSWTSMISCYVHNGLANKALEVFSSMKETG-LEPDYVTLVSILSAVCSLSTLKKGKE 483
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H +I R + + N +++MY +CG V A ++F +++I W+ +IS M+G
Sbjct: 484 IHGFI-IRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHG 542
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G A++LF M + PD +TF+AL+ ACSH GLV++G + M Y++ P +HY
Sbjct: 543 YGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHY 602
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GR LEEA ++ M E VW ALL ACRIH N E+ + ++L+
Sbjct: 603 TCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDL 662
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN FA RW+D ++R ++ GL K GCSWIEV I
Sbjct: 663 DNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKI 711
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 29/237 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV-NVLSACSSISALS 59
M +D++SWTT GYA+ +A+ + ++++ E +AT++ ++L AC ++ L
Sbjct: 322 MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQM--EGMDVDATMIGSILLACRGLNCLG 379
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +H Y + R LS ++ N +I++Y +CG + A+++F + KD++SW+++IS
Sbjct: 380 KIKEIHGY-TIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCY 437
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISA-CS----------HGGLVDQGLILFK 168
NG +AL++FS M G+ PD VT ++++SA CS HG ++ +G IL
Sbjct: 438 VHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEG 497
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++S +VDMY R G +E+A I +W A+++A +H
Sbjct: 498 SISNT------------LVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAYGMH 541
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 122/226 (53%), Gaps = 8/226 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +D+V+W +M+ G+ + G EA+ F +++ + +P++ ++++++ A + L
Sbjct: 221 LEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNA-DLKPDQVSIISIIVASGRLGYLLN 279
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+Y I +D ++ LVGN +I+MY KC + + F+++A+KD+ISW+T +G
Sbjct: 280 GKEIHAYAIKNGFDSNI--LVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGY 337
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A N C QAL+L + + G+ D +++ AC GL G I T+ +
Sbjct: 338 AQNKCYLQALELLRQLQMEGMDVDATMIGSILLACR--GLNCLGKIKEIHGYTIRGGLSD 395
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D+YG G+++ A + + S W +++ +C +H
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMI-SCYVH 439
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 4/200 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R + +W M+GGY G A+ +++EM + T +L AC + L
Sbjct: 18 MSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSYTFPVLLKACGIVEDLFC 76
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGL 119
G +H ++ +Y V N+++ +Y KC D+ A ++F+ M D++SW+++IS
Sbjct: 77 GAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAY 135
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG +AL LFS M+ GV + TF A + AC + G+ + A+ ++
Sbjct: 136 SGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDV 195
Query: 180 TQHYACVVDMYGRAGLLEEA 199
A +V MY R G + EA
Sbjct: 196 YVANA-LVAMYVRFGKMPEA 214
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 2/161 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ DVVSW ++I Y+ G C EA+ +F EM K N T L AC S + G
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVV-TNTYTFAAALQACEDSSFIKLGM 180
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+ I + + V NA++ MYV+ G + A +F L KD+++W+++++G N
Sbjct: 181 QIHAAI-LKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +AL+ F + + PD V+ I++I A G + G
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNG 280
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MY KCG V A +F+ ++ + + +W+ ++ G NG AL+++ M GV D T
Sbjct: 1 MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC---------VVDMYGRAGLLE 197
F L+ AC G+V+ LF EI Y C +V +Y + +
Sbjct: 61 FPVLLKAC---GIVED---LFCGA----EIHGLAIKYGCDSFVFVVNSLVALYAKCNDIN 110
Query: 198 EAEAFIREMPIEAEWSVWGALLNA 221
A M + + W ++++A
Sbjct: 111 GARKLFDRMYVRNDVVSWNSIISA 134
>gi|357113400|ref|XP_003558491.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Brachypodium distachyon]
Length = 393
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 177/292 (60%), Gaps = 5/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SWTTM A G ++AV++F+ M + + EPNEAT+V+VL A +S +L+
Sbjct: 103 MPERDVFSWTTMAWALARSGCPQDAVAMFRAMVLSDDGEPNEATVVSVLHAVASTGSLAC 162
Query: 61 GQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +HSY R LS S +V NA+I++Y KCG+ +A + F++L KDMISW TV+
Sbjct: 163 GKLLHSYAIKR-GLSGSERVIVDNALIDVYGKCGEARLAFEAFDLLPDKDMISWGTVMRA 221
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+A++G ++A+QLFSLM+ GV PD F+ L+ AC H G+V Q + AM VY I P
Sbjct: 222 MAVHGRCKEAMQLFSLMLRRGVRPDGAVFLGLLYACCHAGMVAQAMHFLGAMKRVYGIAP 281
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQE 237
+HY CV+D GRAG ++ R MP+E + GA + D + + +R+
Sbjct: 282 GREHYTCVLDACGRAGRFDDVGEIFRRMPVEHDRKALGAYWSHASASSGDSVAGEQLREW 341
Query: 238 LVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++ + GT+AL+SN+ A A+RW++A +R + + K C+WIEV
Sbjct: 342 FIDGRVDAGGGTYALVSNSLADAERWDNACAVRGRMAARRISKPVACTWIEV 393
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 18/232 (7%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P DVV WT I A G EAV+ F M+ A PN TL +VL AC+ + +L G
Sbjct: 4 PSGDVVRWTKRISALARSGRAAEAVAAFARMD----AAPNALTLASVLPACARLRSLGLG 59
Query: 62 QYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H + R + +N ++ NAV+++Y KCG + A +F+ + +D+ SW+T+ LA
Sbjct: 60 RAIHGFWLRRGGVPGANPILDNAVLDVYAKCGALASARSLFDGMPERDVFSWTTMAWALA 119
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILF-----KAMSTVY 174
+GC + A+ +F M++ + P++ T ++++ A + G + G +L + +S
Sbjct: 120 RSGCPQDAVAMFRAMVLSDDGEPNEATVVSVLHAVASTGSLACGKLLHSYAIKRGLSGSE 179
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH 225
++ ++D+YG+ G A EAF ++ + + WG ++ A +H
Sbjct: 180 RVIVDNA----LIDVYGKCGEARLAFEAF--DLLPDKDMISWGTVMRAMAVH 225
>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
Length = 557
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V SW +I ++ G +AV VF M + +P+ AT+ ++SAC+ + +LS
Sbjct: 240 MPDRNVNSWNMVIAACSQEGLWADAVEVFNRM-RLARFQPDPATMAVLMSACAQLGSLSI 298
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH I + + ++ V N++I+MY KCG V A +F KD +S++ +I LA
Sbjct: 299 ASQVHG-ILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICALA 357
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR ALQ+F M G+ PD VTF+ ++SAC+H GLV G F++M T Y I
Sbjct: 358 QHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQSP 417
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+YGRAGL+EEA R MP++ VWGAL+NACR H N E+ +EL+
Sbjct: 418 DHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAARELIA 477
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + GT+ L++NT A +W+ + +R G++K GCSW+EV+
Sbjct: 478 IEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEVD 526
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 82/316 (25%)
Query: 5 DVVSWTTMIGGYAERG-----FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
+V WT I YA E A+++F+ M + PN T +V+ CS++ A+
Sbjct: 75 NVYLWTATIAAYARHASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVR 134
Query: 60 FGQYVHSYI------------STRYDL------------------SVSNLVGNAVINMYV 89
G VH ++ + D+ S + ++GN ++ YV
Sbjct: 135 EGIQVHGFLFSAGLGRASHVGAALVDMYGSLGRVADARRVFDEMPSTNVVLGNTMVACYV 194
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG-------------------------- 123
+ GDV VF+ +A +D ISW+T++ G G
Sbjct: 195 RAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARDLFEEMPDRNVNSWNMVIAA 254
Query: 124 CGRQ-----ALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTV 173
C ++ A+++F+ M + PD T L+SAC+ G + G++ +
Sbjct: 255 CSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGSLSIASQVHGILRKGCVEMN 314
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----E 229
+ ++ ++DMY + G + +A E ++ S + ++ A H + +
Sbjct: 315 FHVLNS------LIDMYAKCGSVSQAHLLFVETRLKDTVS-YNVMICALAQHGHGRDALQ 367
Query: 230 MFDPIRQELVNKKGVS 245
+FD + +E + V+
Sbjct: 368 IFDEMSEEGLQPDAVT 383
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 171/288 (59%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D +SW T++ GY + G EA+ + ME+ ++ PN+ T V+++ A S + AL
Sbjct: 385 LPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQ 444
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ + + L + V +I++Y KCG + A+ +F + + W+ +I+ L
Sbjct: 445 GMKIHAKL-IKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLG 503
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +ALQLF M+ V D +TF++L+SACSH GLVD+G F M Y I P
Sbjct: 504 IHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSL 563
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG LE+A +R MPI+ + S+WGALL+AC+I+ N E+ L+
Sbjct: 564 KHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLE 623
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+VG + L+SN +A ++WE K+R R GL+K G S + V
Sbjct: 624 VDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 15/292 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD+VSW ++I Y + A+ F+ M+ P+ T+V++ S S +S
Sbjct: 283 MEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQ-LGGIRPDLLTVVSLTSIFSQLSDQRI 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ R L ++GNA++NMY K G + A VF+ L KD ISW+T+++G
Sbjct: 342 SRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYT 401
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 176
NG +A+ +++M P+ T++++I A SH G + QG+ + + S ++
Sbjct: 402 QNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDV 461
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIR 235
T C++D+YG+ G LE+A + E+P + W A++ + IH R +E +
Sbjct: 462 FVAT----CLIDLYGKCGRLEDAMSLFYEIPRDTSVP-WNAIIASLGIHGRGEEALQLFK 516
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR-MGLK---KKTGC 283
L + TF + + + + ++ K D +++ G+K K GC
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGC 568
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV SW MI G+ + G A+ V M K + + + T+ ++L C+ +
Sbjct: 182 MPVKDVGSWNAMISGFCQNGNAAGALGVLNRM-KGEGVKMDTITVASILPVCAQSDDVIN 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ ++ L V NA+INMY K G + A VF+ + +D++SW+++I+
Sbjct: 241 GVLIHLHV-LKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYE 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-------GLILFKAMSTV 173
N AL+ F M + G+ PD +T ++L S S L DQ G ++ +
Sbjct: 300 QNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ--LSDQRISRSILGFVIRREWLDK 357
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +V+MY + G + A ++P + S W L+
Sbjct: 358 DVVIGNA-----LVNMYAKLGYMNCAHTVFDQLPRKDTIS-WNTLVTG 399
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 9/222 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQE---MEKTKEAEPNEATLVNVLSACSSISALS 59
K+++ SW ++I Y G EA++ + M P+ T +L AC S L
Sbjct: 82 KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVS---LV 138
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH + + V +++++Y + G + +A +VF + KD+ SW+ +ISG
Sbjct: 139 DGKKVHCCV-FKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGF 197
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG AL + + M GV D +T +++ C+ V G +L + +
Sbjct: 198 CQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVING-VLIHLHVLKHGLDSD 256
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+++MY + G L++A+ +M + + W +++ A
Sbjct: 257 VFVSNALINMYSKFGRLQDAQMVFDQMEVR-DLVSWNSIIAA 297
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 13/149 (8%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL----QLFSL 134
++ +IN+YV GD+ ++ F+ + K++ SW+++IS G +A+ QLFS+
Sbjct: 55 VLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSM 114
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGR 192
+ PD TF ++ AC LVD K V+++ + + A +V +Y R
Sbjct: 115 CGGGHLRPDFYTFPPILKACV--SLVDGK----KVHCCVFKMGFEDDVFVAASLVHLYSR 168
Query: 193 AGLLEEAEAFIREMPIEAEWSVWGALLNA 221
G+L+ A +MP++ S W A+++
Sbjct: 169 YGVLDVAHKVFVDMPVKDVGS-WNAMISG 196
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 173/293 (59%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V++W +I YA+ G EEA+ +F ++ K P T NVL+AC +I+ L
Sbjct: 345 MVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL-KRDSIWPTHYTYGNVLNACGNIADLQL 403
Query: 61 GQYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
GQ H ++ R+D + VGN++++MY+K G + +VF +A +D +SW+ +
Sbjct: 404 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 463
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG + AL LF M+ + PD VT I ++SAC H GLVD+G F +M+ +
Sbjct: 464 IVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHG 523
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
I P HY C+VD+ GRAG L+EAE I +MP+E + +W +LL ACR+H+N E+ +
Sbjct: 524 ITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTA 583
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L + G + L+SN +A +W + ++R ++ G+ K+ GCSWIE+
Sbjct: 584 GRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEI 636
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 42/257 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW ++I Y + G EA+ +F EM + P+E TL +V+SAC+ ++A
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFS-PDEVTLSSVMSACAGLAADRE 270
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---------------------------- 92
G+ VH+++ L ++ NA+++MY KCG
Sbjct: 271 GRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYA 330
Query: 93 ---DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+V A VF+ + K++I+W+ +I+ A NG +A++LF + + ++P T+
Sbjct: 331 KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 390
Query: 150 LISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAF 202
+++AC G + D Q + ++ P++ + +VDMY + G +++
Sbjct: 391 VLNAC--GNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 448
Query: 203 IREMPIEAEWSVWGALL 219
M S W A++
Sbjct: 449 FERMAARDNVS-WNAMI 464
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 4/209 (1%)
Query: 1 MPKRDVVSWTTMIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+P D S+ ++ A RG +A+ M + N + + LSAC++
Sbjct: 109 IPDPDQCSYNAVVAALARHGRGHAADALRFLAAMH-ADDFVLNAYSFASALSACAAEKDS 167
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ VH ++ R + + +A+++MY KC A +VF+ + ++++SW+++I+
Sbjct: 168 RTGEQVHGLVA-RSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITC 226
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +AL LF M+ G PD+VT +++SAC+ +G + M +
Sbjct: 227 YEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRD 286
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+VDMY + G EA MP
Sbjct: 287 DMVLNNALVDMYAKCGRTWEARCIFDSMP 315
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/290 (40%), Positives = 177/290 (61%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ V WT+MI GY + G +EA+ +F++M+ + ++AT+ V+S+C + AL
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQ-IAGVKVDDATISTVVSSCGQMGALDL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+YVH+Y + L V N++I+MY KCGD+ A +F + +D SW TVI G A
Sbjct: 316 GRYVHAYCDI-HGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSW-TVIMGFA 373
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG +AL LF+ M GV P+++TF+ ++++CSHGGLV+QG F MS++Y I P+
Sbjct: 374 ANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPR 433
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRA LL EAE FI+EMPI + +W +LL ACR + + + + +
Sbjct: 434 IEHYGCMVDLLGRAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGEVGLAEYVAERIQ 493
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G L+S +A RW DANK+R I K+ GCS+IEV+
Sbjct: 494 VLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVD 543
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 106/195 (54%), Gaps = 3/195 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D VSW T+I GY G +A+ F +M K + ++ TL+N L AC+ + G+
Sbjct: 160 DTVSWNTIIAGYIHAGLPNKALQAFSQMAK-GQVMLDDVTLLNALVACARTCMMKVGKLC 218
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + T ++ +G+++I+MY KCG V A ++F+ + ++ + W+++ISG G
Sbjct: 219 HALLVTN-GFEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQ 277
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++A++LF M I GV DD T ++S+C G +D G + A ++ +
Sbjct: 278 SKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLGRYV-HAYCDIHGLGKDISVKN 336
Query: 185 CVVDMYGRAGLLEEA 199
++DMY + G +++A
Sbjct: 337 SLIDMYSKCGDIKKA 351
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 6/167 (3%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+L LS + + ++ G +H+ +S + LS V N +INMY C A V +
Sbjct: 95 SLSAALSTAARMPSVVVGAQLHA-LSVKLGLSSDTFVLNTLINMYSSCSYPSTARSVLDS 153
Query: 104 L--AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
D +SW+T+I+G G +ALQ FS M V DDVT + + AC+ ++
Sbjct: 154 APKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMK 213
Query: 162 QGLILFKAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
G + + T +EI + ++ MY + G +E+A MP
Sbjct: 214 VGKLCHALLVTNGFEI--NCYMGSSLISMYAKCGQVEDARRIFDGMP 258
>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 730
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 180/290 (62%), Gaps = 1/290 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++++W +M+ GY EEA +F+EM + EPN T+ ++L C+ ++ L G+
Sbjct: 394 KNIITWNSMLSGYTHMDRSEEASFLFREMLLSG-IEPNYVTIASILPLCARVANLQHGKE 452
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H YI R L+ N++++MY + G V A ++F+ ++ +D ++++++I+G + G
Sbjct: 453 FHCYILRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQG 512
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR+AL+LF M + PD VT +A++SACSH GLV +G+ LF+ M + Y I+P+ +H+
Sbjct: 513 EGREALKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHF 572
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD++GRAGLL +A+ I MP ++W LL ACRIH N E+ + ++L+ +
Sbjct: 573 ACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRP 632
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N +A A W K+R +R +G++K GC+W++V F
Sbjct: 633 ENSGYYVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFF 682
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 106/202 (52%), Gaps = 14/202 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++++W T+ GG + G EEA+ + M + AT++ L ACS I A+ G+ +
Sbjct: 294 NIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIG-LGACSHIGAIKLGREI 352
Query: 65 H-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H S I + YD V N V NA+I MY +C + A +F K++I+W++++SG
Sbjct: 353 HGSAIRSFYD-GVDN-VKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMD 410
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVP 178
+A LF M+++G+ P+ VT +++ C+ + G IL +A Y ++
Sbjct: 411 RSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLL- 469
Query: 179 QTQHYACVVDMYGRAGLLEEAE 200
+ +VDMY R+G + EA+
Sbjct: 470 ----WNSLVDMYARSGKVLEAK 487
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ W +I Y G EA+S +++M K P++ T +VL AC ++FG+ +H+
Sbjct: 160 LPWNLLISSYVRNGLHGEALSAYKQMTH-KGIRPDKFTYPSVLKACGEKLDIAFGKKLHA 218
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I+ L + V N++++MY K G++ A +F + +D +SW+T+ISG A G +
Sbjct: 219 SINASC-LGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWK 277
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
+A +LF M + G+ + +T+ + C G ++ L L M +
Sbjct: 278 EAFELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRS 323
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD V++T++I GY +G EA+ +F EM+K + +P+ T+V VLSACS ++
Sbjct: 493 ISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKK-RHIKPDHVTMVAVLSACSHSGLVTE 551
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + + + Y + +++++ + G + A ++ + Y+ + W+T++
Sbjct: 552 GIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPSSAMWATLLGAC 611
Query: 120 AMNG 123
++G
Sbjct: 612 RIHG 615
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 178/287 (62%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +++W +I GY++ G + + +F++M K+ P+ TLV+VLS+C+ + A
Sbjct: 214 MPVKGLITWNAVISGYSQNGLAYDVLELFEQM-KSSGVCPDPFTLVSVLSSCAHLGAKKI 272
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ V + + + + NA+I+MY +CG++ A VF+++ K ++SW+ +I
Sbjct: 273 GQEVGELVEAN-GFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYG 331
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G L LF MI G+ PD F+ ++SACSH GL D+GL LF+AM Y++ P
Sbjct: 332 MHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGP 391
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EA FI MP+E + +VWGALL AC+IH+N +M + +++
Sbjct: 392 EHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE 451
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ +++G + LMSN ++ + E +IR +R +KK G S++E
Sbjct: 452 FEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 498
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 116/247 (46%), Gaps = 20/247 (8%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V + +I GY +A +F+ M++T + T++ ++ C+ L G+ +H
Sbjct: 119 VCYNALISGYTANSKVSDAAFMFRRMKETG-VSVDSVTILGLVPLCTVPEYLWLGRSLHG 177
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
S ++ N+ I MY+KCG V ++F+ + K +I+W+ VISG + NG
Sbjct: 178 ECVKGGTYSEVAVL-NSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAY 236
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV------PQT 180
L+LF M +GV PD T ++++S+C+H G G V E+V P
Sbjct: 237 DVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIG-------QEVGELVEANGFAPNV 289
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQ 236
++ MY R G L +A A MP+++ S W A++ +H E +FD + +
Sbjct: 290 FLSNALISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIGCYGMHGMGETGLTLFDDMIK 348
Query: 237 ELVNKKG 243
+ G
Sbjct: 349 RGIRPDG 355
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 31/260 (11%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
SW + A + E++S+++ M ++ + P+ + +L +C+S+S GQ +H +
Sbjct: 17 SWNVRLRELAYQSLFTESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLHCH 75
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLAMNGCG 125
+ R V A+I+MY KCG V A +VF N + + + ++ +ISG N
Sbjct: 76 V-IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKV 134
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVY 174
A +F M GV D VT + L+ C+ HG V G Y
Sbjct: 135 SDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGG---------TY 185
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
V + + MY + G +E EMP++ W A+++ +N +D +
Sbjct: 186 SEVAVLNSF---ITMYMKCGSVESGRRLFDEMPVKG-LITWNAVISG--YSQNGLAYDVL 239
Query: 235 RQ-ELVNKKGVSVGTFALMS 253
E + GV F L+S
Sbjct: 240 ELFEQMKSSGVCPDPFTLVS 259
>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 183/286 (63%), Gaps = 4/286 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+S+ ++I G EE+ +F EM +T P+ TL+ VL+ACS ++AL G
Sbjct: 372 KDVISYNSLITGCVVNCRPEESFRLFHEM-RTSGIRPDITTLLGVLTACSHLAALGHGSS 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H Y + +V+ + NA+++MY KCG + +A +VF+ + +D++SW+T++ G ++G
Sbjct: 431 CHGYCVV-HGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQTQH 182
G++AL LF+ M GV PD+VT +A++SACSH GLVD+G LF +MS + ++P+ H
Sbjct: 490 LGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH 549
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+ D+ RAG L+EA F+ +MP E + V G LL+AC ++N E+ + + +++
Sbjct: 550 YNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM-QSL 608
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + + L+SNT++ A+RWEDA +IR ++ GL K G SW++V
Sbjct: 609 GETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ + ++W MI YA F E+A+ ++ +M + P + T VL AC+ + A+ G
Sbjct: 64 PRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSG-VRPTKYTYPFVLKACAGLRAIDDG 122
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +HS+++ D + V A+++ Y KCG++ +AI+VF+ + +DM++W+ +ISG ++
Sbjct: 123 KLIHSHVNCS-DFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSL 181
Query: 122 NGCGRQALQLF-SLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ C + LF + I+G+ P+ T + + A G + +G
Sbjct: 182 HCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 8/249 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVF-QEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
K++ V+W+ MIGGY E +EA VF Q + A + +L C+ LS G
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VH Y + + + V N +I+ Y K G + A + F+ + KD+IS++++I+G +
Sbjct: 328 RCVHCY-AVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVV 386
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
N ++ +LF M +G+ PD T + +++ACSH + G V+ T
Sbjct: 387 NCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSC-HGYCVVHGYAVNTS 445
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQE 237
++DMY + G L+ A+ M + + W +L IH +F+ +++
Sbjct: 446 ICNALMDMYTKCGKLDVAKRVFDTMH-KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQET 504
Query: 238 LVNKKGVSV 246
VN V++
Sbjct: 505 GVNPDEVTL 513
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+V+W MI G++ + + +F +M + PN +T+V + A AL
Sbjct: 164 MPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALRE 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y TR S +V ++++Y K + A +VF++ K+ ++WS +I G
Sbjct: 224 GKAVHGY-CTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYV 282
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
N ++A ++F M++N D+V + ++ GL+ G F +S
Sbjct: 283 ENEMIKEAGEVFFQMLVN----DNVAMVTPVAI----GLILMGCARFGDLS 325
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+++L C L GQ +H ++ R LS S ++ N + +Y C +V +A VF+
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 104 LAYKDM--ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + + I+W +I A N +AL L+ M+ +GV P T+ ++ AC+ +D
Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120
Query: 162 QGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G ++ S V T Y C +VD Y + G LE A EMP + + W A++
Sbjct: 121 DGKLIH---SHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMP-KRDMVAWNAMI 176
Query: 220 NACRIH 225
+ +H
Sbjct: 177 SGFSLH 182
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRD+VSW TM+ G+ G +EA+S+F M++T P+E TL+ +LSACS +
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETG-VNPDEVTLLAILSACSHSGLVDE 528
Query: 61 GQYVHSYISTRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G+ + + +S R D +V + N + ++ + G + A N + ++ D+ T++S
Sbjct: 529 GKQLFNSMS-RGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLS 587
Query: 118 G 118
Sbjct: 588 A 588
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 172/282 (60%), Gaps = 2/282 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ SW++M+ G CEEA+ VF EM PNE+ LV+ +SACS + +L
Sbjct: 196 MPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVV-PNESALVSAVSACSLLRSLEH 254
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH+Y + R +S ++ A+++MY KCG + A++VF + K++ SW+++I+GLA
Sbjct: 255 GVWVHAY-AKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVKNIYSWNSMITGLA 313
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG QAL LF M + GV P+D+TFI L+ ACSH GLVD+G LF M + I P
Sbjct: 314 MNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLFNMMVNGFGIQPVQ 373
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY +VD+ GRAG + EA F+ MP+E +WGAL AC+IH E+ + I ++L+
Sbjct: 374 EHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGACKIHGEVELGEEIAKKLIE 433
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282
+ + L+SN + ++RW+D +R ++ + K TG
Sbjct: 434 LEPRHGSRYILLSNIYGASNRWDDMATVRRLLKDRKVPKGTG 475
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 98/223 (43%), Gaps = 57/223 (25%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV+WTTM+ G+A G E A F M + NV+S
Sbjct: 138 DVVTWTTMVTGHANTGDLERARWFFDAMPER-----------NVVS-------------- 172
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
NA++ Y G + A ++F+++ ++ SWS++++GL +
Sbjct: 173 ----------------WNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNR 216
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL-------FKAMSTVYEIV 177
+AL++FS MI GV P++ ++ +SACS ++ G+ + + MS V
Sbjct: 217 CEEALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLA-- 274
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+VDMYG+ G + A MP++ +S W +++
Sbjct: 275 ------TAIVDMYGKCGGIHNAVRVFAAMPVKNIYS-WNSMIT 310
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SWT +I G + G+ E+A+ F +M+++ A + +++ VL+AC+ + AL+
Sbjct: 187 MPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAA-DYVSIIAVLAACADLGALTL 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH ++ + + + + N++I+MY +CG + A QVF +A + ++SW+++I G A
Sbjct: 246 GLWVHRFVMPQ-EFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++L+ F M G PD V++ ++ACSH GLV++GL LF M +V++I P+
Sbjct: 305 VNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRI 364
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+YGRAG LE+A I EMP++ V G+LL ACR H + + + + + L
Sbjct: 365 EHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFK 424
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L+SN +A +W+ AN +R ++ G++KK G S +E++
Sbjct: 425 LDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEID 473
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 143/317 (45%), Gaps = 51/317 (16%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF--GQY 63
+V WT+ + Y G EA + F M + EPN T + +LSAC+ + SF
Sbjct: 57 IVLWTSSLARYCRNGQLSEAAAEFTRM-RLAGVEPNHITFITLLSACADFPSESFFFASS 115
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVKC------------------------------- 91
+H Y + +Y L + +VG A+I+MY KC
Sbjct: 116 LHGY-ACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRN 174
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ +AIQ+F+ + +D ISW+ +I+GL +G QAL+ F M +GV D V+ IA++
Sbjct: 175 GEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVL 234
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+ G + GL + + + E + ++DMY R G +E A +M
Sbjct: 235 AACADLGALTLGLWVHRFV-MPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTL 293
Query: 212 WSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA-------- 259
S W +++ ++ + E F +++E GVS T AL + + AG
Sbjct: 294 VS-WNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSY-TGALTACSHAGLVNKGLELF 351
Query: 260 DRWEDANKIRDEIRRMG 276
D + +KI I G
Sbjct: 352 DNMKSVHKITPRIEHYG 368
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 34/158 (21%)
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
FN + ++ W++ ++ NG +A F+ M + GV P+ +TFI L+SAC+
Sbjct: 49 FNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSE 108
Query: 156 --------HG-----GLVDQGLILFKAMSTVYEIVPQTQH---------------YACVV 187
HG GL +++ A+ +Y Q H + ++
Sbjct: 109 SFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTML 168
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + R G +E A EMP S W AL+N H
Sbjct: 169 NGFMRNGEIELAIQLFDEMPTRDAIS-WTALINGLLKH 205
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 177/287 (61%), Gaps = 2/287 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSW MI GY G ++A+ +F++M+ E +P+ T++++LSAC+ L G
Sbjct: 239 PDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGE-KPDTVTMLSLLSACADSGDLDAG 297
Query: 62 QYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++S R+ + + +GNA+I+MY KCG + A++VF ++ K++ +W+++I GLA
Sbjct: 298 RRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLA 357
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +++ +F M+ V PD++TF+A+++ACSHGG+VD+G F M Y I P
Sbjct: 358 LHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNI 417
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM R GLL+EA FI M IE +W LL ACRIH E+ + +EL+
Sbjct: 418 KHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLK 477
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G F L+SN +A W + +R + G+ K+ G + I+
Sbjct: 478 ARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 96/225 (42%), Gaps = 45/225 (20%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D V+W+ MI G+A RG A +F E
Sbjct: 178 REDAVAWSAMISGFARRGDIGAARELFDES------------------------------ 207
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
V +LV N +I Y K GD+ A ++F+ +D++SW+ +ISG
Sbjct: 208 ------------PVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVR 255
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQT 180
G +QA++LF M G PD VT ++L+SAC+ G +D G L +S + I P T
Sbjct: 256 CGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTT 315
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G + A M + S W +++ +H
Sbjct: 316 ALGNALIDMYAKCGSMTSALEVFWLMQ-DKNVSTWNSIIGGLALH 359
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK------EAEPNEATLVNVLSACSS 54
+P D + T+I G A +AVS++ M + P++ T VL AC++
Sbjct: 68 IPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAA 127
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
+ A G VH+++ + V NA+I M+ GD+G A +F+ A +D ++WS
Sbjct: 128 MGAGETGAQVHAHV-VKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSA 186
Query: 115 VISGLAMNGCGRQALQLF 132
+ISG A G A +LF
Sbjct: 187 MISGFARRGDIGAARELF 204
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++V +W ++IGG A G E+++VF++M + +P+E T V VL+ACS +
Sbjct: 341 MQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGN-VKPDEITFVAVLAACSHGGMVDK 399
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G S + RY + + +++M + G + A + + M + + W T++
Sbjct: 400 GHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGAC 459
Query: 120 AMNG 123
++G
Sbjct: 460 RIHG 463
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 172/289 (59%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVVSW++MI G+ EA+ F+ M +PN T + LSAC++ AL
Sbjct: 460 MAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSACAATGALRS 517
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+ R + V NA++++YVKCG A F++ + KD++SW+ ++SG
Sbjct: 518 GKEIHAYV-LRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFV 576
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL LF+ M+ G PD+VTF+AL+ ACS G+V QG LF M+ + IVP
Sbjct: 577 AHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNL 636
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L EA I MPI+ + +VWGALLN CRIHR+ E+ + + ++
Sbjct: 637 KHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILE 696
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ V L+ + + A +W ++R +R GL++ GCSW+EV
Sbjct: 697 LEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVK 745
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 140/283 (49%), Gaps = 16/283 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D +SW MI G+ E CE + +F M + E +PN T+ +V A +S + F
Sbjct: 258 MAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN-EVQPNLMTITSVTVASGMLSEVGF 316
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H + R ++ N++I MY G +G A ++F+ + KD +SW+ +ISG
Sbjct: 317 AKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYE 375
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV----YEI 176
NG +AL++++LM ++ V PDDVT + ++AC+ G +D G+ L + Y +
Sbjct: 376 KNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVV 435
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIR 235
V +++MY ++ +++A + M E + W +++ C HR+ E R
Sbjct: 436 VANA-----LLEMYAKSKHIDKAIEVFKFM-AEKDVVSWSSMIAGFCFNHRSFEALYYFR 489
Query: 236 QELVNKKGVSVGTFALMSNTFA-GADRWEDANKIRDEIRRMGL 277
L + K SV A +S A GA R +I + R G+
Sbjct: 490 YMLGHVKPNSVTFIAALSACAATGALR--SGKEIHAYVLRCGI 530
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW M+GGY + GF EEA+ ++ M P+ T VL C I
Sbjct: 157 MPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG-MRPDVYTFPCVLRTCGGIPDWRM 215
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R+ V NA++ MY KCGD+ A +VF+ +A D ISW+ +I+G
Sbjct: 216 GREVHAHV-LRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHF 274
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
N L+LF M+ N V P+ +T ++ A
Sbjct: 275 ENHECEAGLELFLTMLENEVQPNLMTITSVTVA 307
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
+E + E P+E V + C A+ G + + S +GNA+++M V+
Sbjct: 87 LESSPEP-PDEGAYVALFRLCEWRRAVDAGMRACARADAEHP-SFGLRLGNAMLSMLVRF 144
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ A +VF + +D+ SW+ ++ G G +AL L+ M+ G+ PD TF ++
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204
Query: 152 SACSHGGLVD 161
C GG+ D
Sbjct: 205 RTC--GGIPD 212
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 174/290 (60%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VSW +MI GY + A+++F+EME E + TL++VL AC+ AL
Sbjct: 348 MPERDAVSWNSMIAGYVQIKDYARALALFREME-IANVEATDITLISVLGACAETGALEI 406
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R + + + NA+++MY KCG + +A +VF+ L K + W+ +I LA
Sbjct: 407 GRKIHLSLKQR-EYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLA 465
Query: 121 MNGCGRQALQLFSLM--IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
++G +AL+LFS M ++G P+ VTFI ++ ACSH GLVD+G F M Y+I+P
Sbjct: 466 VHGYCEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMP 525
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY C+VD+ R GLL+EA I+ MP EA +W LL ACR+H + ++ + Q+L
Sbjct: 526 DIKHYGCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQL 585
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A A RW D ++R E+ G+ KK G S I +
Sbjct: 586 GKMEPLRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKKPGSSHIGI 635
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 18/225 (8%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+D +++ Y++ GF + A VF EM EKT T NV+ ISA
Sbjct: 258 QDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKT-------ITSWNVM-----ISAYDQIN 305
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
S S + N+V N +I Y++ G + A VF + +D +SW+++I+G
Sbjct: 306 DFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQ 365
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQT 180
+AL LF M I V D+T I+++ AC+ G ++ G + ++ Y+I
Sbjct: 366 IKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYL 425
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ +VDMY + G L A E+ ++ S W A++ + +H
Sbjct: 426 SN--ALVDMYAKCGHLNLAWEVFSELKMK-HISCWNAMIVSLAVH 467
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 172/289 (59%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVVSW++MI G+ EA+ F+ M +PN T + LSAC++ AL
Sbjct: 460 MAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM--LGHVKPNSVTFIAALSACAATGALRS 517
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+Y+ R + V NA++++YVKCG A F++ + KD++SW+ ++SG
Sbjct: 518 GKEIHAYV-LRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFV 576
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL LF+ M+ G PD+VTF+AL+ ACS G+V QG LF M+ + IVP
Sbjct: 577 AHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNL 636
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L EA I MPI+ + +VWGALLN CRIHR+ E+ + + ++
Sbjct: 637 KHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILE 696
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ V L+ + + A +W ++R +R GL++ GCSW+EV
Sbjct: 697 LEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVK 745
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 140/283 (49%), Gaps = 16/283 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D +SW MI G+ E CE + +F M + E +PN T+ +V A +S + F
Sbjct: 258 MAVTDCISWNAMIAGHFENHECEAGLELFLTMLEN-EVQPNLMTITSVTVASGMLSEVGF 316
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H + R ++ N++I MY G +G A ++F+ + KD +SW+ +ISG
Sbjct: 317 AKEMHGFAVKR-GFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYE 375
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV----YEI 176
NG +AL++++LM ++ V PDDVT + ++AC+ G +D G+ L + Y +
Sbjct: 376 KNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVV 435
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIR 235
V +++MY ++ +++A + M E + W +++ C HR+ E R
Sbjct: 436 VANA-----LLEMYAKSKHIDKAIEVFKFM-AEKDVVSWSSMIAGFCFNHRSFEALYYFR 489
Query: 236 QELVNKKGVSVGTFALMSNTFA-GADRWEDANKIRDEIRRMGL 277
L + K SV A +S A GA R +I + R G+
Sbjct: 490 YMLGHVKPNSVTFIAALSACAATGALR--SGKEIHAYVLRCGI 530
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW M+GGY + GF EEA+ ++ M P+ T VL C I
Sbjct: 157 MPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG-MRPDVYTFPCVLRTCGGIPDWRM 215
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R+ V NA++ MY KCGD+ A +VF+ +A D ISW+ +I+G
Sbjct: 216 GREVHAHV-LRFGFGDEVDVLNALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHF 274
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
N L+LF M+ N V P+ +T ++ A
Sbjct: 275 ENHECEAGLELFLTMLENEVQPNLMTITSVTVA 307
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
+E + E P+E V + C A+ G + + S +GNA+++M V+
Sbjct: 87 LESSPEP-PDEGAYVALFRLCEWRRAVDAGMRACARADAEHP-SFGLRLGNAMLSMLVRF 144
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G++ A +VF + +D+ SW+ ++ G G +AL L+ M+ G+ PD TF ++
Sbjct: 145 GEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVL 204
Query: 152 SACSHGGLVD 161
C GG+ D
Sbjct: 205 RTC--GGIPD 212
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 181/292 (61%), Gaps = 4/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+ MI G + EA++VF M + E +P+E TLV+V+SAC+++ AL
Sbjct: 361 MPDKDNVSWSAMIAGCVQNNQSSEALTVFDNM-RAHEIKPDEVTLVSVISACTNLCALEQ 419
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +Y +++ ++G ++I+MY+KCG + A++VF+M+ K W+ VI GLA
Sbjct: 420 GKLVHEYIR-QYQYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLA 478
Query: 121 MNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG ++L +FS M +G+ P ++TF ++SAC HGGLV++G FK M Y+I+P
Sbjct: 479 MNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPN 538
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG + EAE I+ MP+ + WGALL AC H + E+ + + ++LV
Sbjct: 539 IRHYGCMVDLLGRAGYVREAEDLIQSMPMSPDVPAWGALLGACWKHSDSEVGERVGKKLV 598
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
G ++SN +A W+ +R +++ + K GCS +E + S
Sbjct: 599 KLDPHHDGFQTMLSNIYASEGMWQCVKDLRGSMKQH-VAKVAGCSVVESSHS 649
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 119/256 (46%), Gaps = 51/256 (19%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFG 61
RD +WT MI + EA++VF +M + E P +EA +V+V++AC+ + G
Sbjct: 231 HRDAFTWTAMISCFERNDLFVEALAVFSDMRE--EGWPVDEAVMVSVVAACAKSEVIQNG 288
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ H + R L V NA+I+MY C DV A ++F+ D SW+++ISG
Sbjct: 289 EVCHGLV-VRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLK 347
Query: 122 N--------------------------GC-----GRQALQLFSLMIINGVFPDDVTFIAL 150
N GC +AL +F M + + PD+VT +++
Sbjct: 348 NGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSV 407
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEA-EAFI 203
ISAC++ ++QG + V+E + Q Q+ +V DMY + G +E A E F
Sbjct: 408 ISACTNLCALEQGKL-------VHEYIRQYQYNITIVLGTSLIDMYMKCGCMEAALEVF- 459
Query: 204 REMPIEAEWSVWGALL 219
+M E W A++
Sbjct: 460 -DMVEEKGTPCWNAVI 474
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 109/280 (38%), Gaps = 78/280 (27%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D VSW T++ Y G E+AV VF M + A
Sbjct: 168 PVWDAVSWNTILATYVRDGDVEQAVGVFARMPERSAA----------------------- 204
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+VS++V ++ + G V A VF+ ++D +W+ +IS
Sbjct: 205 -------------AVSSMVA-----LFARTGMVEEARGVFDGAEHRDAFTWTAMISCFER 246
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGL------ 164
N +AL +FS M G D+ +++++AC+ HG +V GL
Sbjct: 247 NDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNV 306
Query: 165 --ILFKAMSTVYEIVPQTQ---------HYA--CVVDMYGRAGLLEEAEAFIREMPIEAE 211
L S+ ++V + H++ ++ Y + G +E+A+A MP +
Sbjct: 307 QNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDN 366
Query: 212 WSVWGALLNACRIHRNDE-----MFDPIRQELVNKKGVSV 246
S W A++ C + N +FD +R + V++
Sbjct: 367 VS-WSAMIAGC-VQNNQSSEALTVFDNMRAHEIKPDEVTL 404
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS+ + ++ + + NA+++MY CG V A +VF+ D +SW+T+++
Sbjct: 125 GRQVHSH-AVKHGFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYV 183
Query: 121 MNGCGRQALQLFSLM 135
+G QA+ +F+ M
Sbjct: 184 RDGDVEQAVGVFARM 198
>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 179/288 (62%), Gaps = 5/288 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD +W MI GY + G EE +VF++M + + PN TL ++L AC+ + + G+
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGKQ 546
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + R L+ + VG A+++MY K G + A VF K+ ++++T+IS +G
Sbjct: 547 IHGF-AIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHG 605
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL LF M+ +G+ PD VTF+A++SACS+ GLVD+GL +F++M Y+I P +HY
Sbjct: 606 MGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHY 665
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVN-K 241
CV DM GR G + EA F++ + E + +WG+LL ACRIH E+ + +L+ +
Sbjct: 666 CCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEME 725
Query: 242 KGVSV-GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
KG S+ G L+SN +A W++ +++R E+R+ GL K+ GCSW+EV
Sbjct: 726 KGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 26/229 (11%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+ W TMIGGY + EA+ +F ++ ++++ ++ T ++ L+A S + L G+
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGR 342
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+YI + + ++ NA+I MY +CG +G + +VF+ + +D+++W+T++S N
Sbjct: 343 QLHAYI-LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMS 171
G + L L M G D VT AL+S S H L+ G I F+ M
Sbjct: 402 GLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMD 460
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEA-FIREMPIEAEWSVWGALL 219
+ ++DMY ++GL+ A+ F + + + + W A++
Sbjct: 461 SY------------LIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMI 497
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W TM+ + + G +E + + M+K + + TL +LS S++ +
Sbjct: 383 MLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQK-QGFMVDSVTLTALLSLASNLRSQEI 441
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISG 118
G+ H+Y+ R+ + + + +I+MY K G + A Q+F N +D +W+ +I+G
Sbjct: 442 GKQAHAYL-IRHGIQFEGM-DSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAG 499
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG + +F MI V P+ VT +++ AC+ G + G
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR+VV+W TMI Y + EA +F+ M + P + VNV A +S
Sbjct: 178 MRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVWRMSDYDN 236
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++ + D V ++ I MY + G V A ++F+ ++ W+T+I G
Sbjct: 237 ANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGY 296
Query: 120 AMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAM---STVYE 175
N C +A+ LF ++ + F DDVTF++ ++A S ++ G L + ST+ +
Sbjct: 297 VQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQ 356
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+V ++ MY R G + + M +E + W +++A
Sbjct: 357 VVILN----AIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ V W T+I G+ +A+ + M + + + T + L AC+ +L
Sbjct: 63 IPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKL 122
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC-------------GDVGIAIQVFNMLAYK 107
G+ +H ++ R S +V N+++NMY C + + +VF+ + +
Sbjct: 123 GKALHCHV-LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKR 181
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
++++W+T+IS +A ++F M+ G+ P V+F+ + A
Sbjct: 182 NVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++ V++TTMI Y + G E A+S+F M + +P+ T V +LSACS + G
Sbjct: 588 EKNSVTYTTMISSYGQHGMGERALSLFHAMLGSG-IKPDSVTFVAILSACSYAGLVDEGL 646
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
+ + Y + S V +M + G V
Sbjct: 647 RIFQSMEREYKIQPSAEHYCCVADMLGRVGRV 678
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 177/286 (61%), Gaps = 4/286 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D V W +M+ GYA+ G EEA+ +F+ M + P T +++ A ++S L G+ +
Sbjct: 235 DAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRLGKQL 293
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+Y I R++ ++ + +++I+MY KCG+V IA +VFN + D++SW+ +I G A++G
Sbjct: 294 HAYLIRARFNDNI--FISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHG 351
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A LF M + V P+ +TF+A+++ACSH GLVD G F +MS Y VP +H
Sbjct: 352 PTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHC 411
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
A + D GRAG L+EA FI EM I+ SVW LL ACR+H+N + + + +++ +
Sbjct: 412 AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEP 471
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S+G+ ++SN ++ + RW +A ++R +R G+KK+ CSWIEV
Sbjct: 472 KSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVK 517
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 91/164 (55%), Gaps = 4/164 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW T+I G AE +EA+S+ +EM + P+ TL VL + + +
Sbjct: 130 MLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFM-PDTFTLSTVLPIFAECADIKR 188
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH Y I +D V VG+++I+MY C + +++VF+ + D + W+++++G
Sbjct: 189 GMVVHGYAIKNGFDNDV--FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGY 246
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
A NG +AL +F M+ GV P VTF +LI A + L+ G
Sbjct: 247 AQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLG 290
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHS 66
SW I A +G A+S+F +M + + A+L L +C+ + + +H+
Sbjct: 14 SWAYQIRMAASQGQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73
Query: 67 YISTRYDLSVSNLVGNAVINMYVK-------------CGDVGIAI-------QVFNMLAY 106
++ R NA++N+ +K G+ G+ +VF+ +
Sbjct: 74 -LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLE 132
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+D +SW+T+I G A + ++AL + M +G PD T ++ + + +G+++
Sbjct: 133 RDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVV 192
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 180/287 (62%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + DV SW ++I YA+ G EA S+F +M K E N TL VL AC+ AL
Sbjct: 259 MEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQI 318
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + +L + +VG ++++MY KCG V +A + F+ L K++ SW+ +++G
Sbjct: 319 GKCIHDQV-VKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYG 377
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+++F MI G+ P+ +TF+++++ACSH GL+ +G F M +++ P
Sbjct: 378 MHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGI 437
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EA I+EM ++ ++ VWG+LL ACRIH+N E+ + ++L
Sbjct: 438 EHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFK 497
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN +A A RW+D ++R ++ GL K G S +E
Sbjct: 498 LDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVE 544
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE----------ATLVNVLS 50
+P+R+VVSWT+MI GY + EAV +F+E E + +E L V+S
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206
Query: 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
AC+ + S + VH ++ + VGN +++ Y KCG++ ++ +VF+ + D+
Sbjct: 207 ACARVCVKSVTECVHG-LAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVC 265
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKA 169
SW+++I+ A NG +A LFS M+ G V + VT A++ AC+H G + G +
Sbjct: 266 SWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQ 325
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEA-EAFIR 204
+ + E+ +VDMY + G +E A +AF R
Sbjct: 326 VVKM-ELEDNLVVGTSIVDMYCKCGRVEMARKAFDR 360
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 2/135 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K V SW ++I +A G +A+ F M K PN +T + +CSS+ L G+
Sbjct: 48 KTSVYSWNSIIADFARSGDSLQALYAFSSMRKL-SLHPNRSTFPCTIKSCSSLYDLCAGK 106
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H + + V +A+I+MY KCG + A ++F+ + ++++SW+++ISG N
Sbjct: 107 QIHQQ-AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165
Query: 123 GCGRQALQLFSLMII 137
R+A+ LF ++
Sbjct: 166 ERAREAVFLFKEFLL 180
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH------GGLVDQGL 164
SW+++I+ A +G QAL FS M + P+ TF I +CS G + Q
Sbjct: 53 SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQA 112
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+F S ++ + ++DMY + G L +A E+P
Sbjct: 113 FVFGYGSDIFVA-------SALIDMYSKCGYLNDARKLFDEIP 148
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 175/292 (59%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+ V W TMI G ++ E+A+ +F+EM+ + + + T++ + SAC + A
Sbjct: 425 IPERNAVFWNTMISGLVQKSLFEDAIELFREMQ-GEGIKADRVTMMGIASACGYLGAPEL 483
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++VH+YI + + + A+++M+ +CGD A+QVFN + +D+ +W+ I +A
Sbjct: 484 AKWVHTYIE-KNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMA 542
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G A LF+ M+I GV PD V F+ +++ACSHGG V+QGL +F M + I PQ
Sbjct: 543 MEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQI 601
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA I+ MP+E VWG+LL ACR+H+N EM + +
Sbjct: 602 EHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINE 661
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G L+SN +A A +W D ++R +R G++K G S ++VN I
Sbjct: 662 LAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVI 713
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 44/248 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT++I GYA +EAVS+F EM + P+ T+V V+SAC+ + L
Sbjct: 192 MSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAG-IRPSSVTMVCVISACAKLRDLDM 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ V +YI L ++ ++ NA+++MY+KCG + A ++F+ ++++ ++T++S A
Sbjct: 251 GERVCAYIG-ELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKA 169
G R+AL + M+ G PD VT ++ ISA + HG ++ GL + +
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEA-------------------EAFIREMPIEA 210
+ V ++DMY + G E A FIR +E+
Sbjct: 370 IGNV------------IIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVES 417
Query: 211 EWSVWGAL 218
W V+ +
Sbjct: 418 AWEVFNQI 425
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 41/260 (15%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R++V + T++ YA +G EA+++ EM + + P+ T+++ +SA + + L +G+
Sbjct: 296 RNLVLYNTILSNYARQGLAREALAILDEMLQ-QGPRPDRVTMLSAISASAQLVDLFYGKV 354
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWS---------- 113
H Y+ R L + +GN +I+MY+KCG +A +VF++++ K ++SW+
Sbjct: 355 CHGYV-IRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNG 413
Query: 114 ---------------------TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
T+ISGL A++LF M G+ D VT + + S
Sbjct: 414 DVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIAS 473
Query: 153 ACSHGGLVDQGLILFKAMSTVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
AC + G + L K + T E I + +VDM+ R G + A +M E
Sbjct: 474 ACGYLGAPE----LAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKM-TE 528
Query: 210 AEWSVWGALLNACRIHRNDE 229
+ S W A + + N E
Sbjct: 529 RDVSAWTAAIGTMAMEGNGE 548
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 3/196 (1%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
++I GY+ G EA+ ++ M PN T VLS C+ I+A G VH +
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRM-LVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSV- 157
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
+ L + N +I+ Y +CG + +VF ++ ++++SW+++I G A ++A+
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189
LF M+ G+ P VT + +ISAC+ +D G + + + + + A +VDM
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNA-LVDM 276
Query: 190 YGRAGLLEEAEAFIRE 205
Y + G ++ A+ E
Sbjct: 277 YMKCGAIDAAKRLFDE 292
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 182/288 (63%), Gaps = 9/288 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W T+I YA G AVS++ +M T+ PN TL+ V+SAC+++ AL G+
Sbjct: 488 KGDVVTWNTLISSYAHLGHSNTAVSLYDQM-LTEGLTPNSTTLITVISACANLVALERGE 546
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+HSY+ YD+S++ A+I+MY KCG +G A ++F+ + D+++W+ +ISG
Sbjct: 547 KIHSYVKEMGWDYDVSINT----ALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGY 602
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G +QAL+LF M + P+ VTF+A++SAC H GL+++G LF M Y + P
Sbjct: 603 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEPN 661
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ G++G L+EAE + MP+E + +WG LL+AC++H + EM I ++
Sbjct: 662 LKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAF 721
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN++ A +W++ K+R+ ++ G++K G S ++
Sbjct: 722 ASDAENEGYYILISNSYGSAKKWDEIEKLREAMKNHGVQKGAGWSAVD 769
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 135/284 (47%), Gaps = 15/284 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DVVSWT++IG Y RG EA+ +FQEM ++ +P++ + +LS + +
Sbjct: 280 LPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESG-LQPDDVLVSCLLSGLGNSGNVHG 338
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I R + + LVGNA+I+MY K V A +VF +L +D SW+ +I G
Sbjct: 339 GKAFHAVIMKR-NFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNLMIVGYC 397
Query: 121 MNGCGRQALQLFSLMIINGVFP---DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
GC + L+L+ M + D + ++ IS+CS LV+ L ++ +
Sbjct: 398 KAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSR--LVELRLGRSAHCYSIKHWL 455
Query: 178 PQTQHYACV-VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRND--EMFD 232
+ A V + MYGR G + A ++ + W L++ A H N ++D
Sbjct: 456 DEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNTAVSLYD 515
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
+ E + ++ T +R E KI ++ MG
Sbjct: 516 QMLTEGLTPNSTTLITVISACANLVALERGE---KIHSYVKEMG 556
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 5/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK---EAEPNEATLVNVLSACSSISA 57
M +RDVV+WT ++ G G C + + EM + +A PN T+ + L AC +
Sbjct: 175 MRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDE 234
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L+ G+ +H Y + + + S +V +A+ +MY KC A +F L KD++SW+++I
Sbjct: 235 LNSGRCLHGY-AVKVGVGDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIG 293
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G R+A++LF M+ +G+ PDDV L+S + G V G F A+
Sbjct: 294 IYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNVHGGKA-FHAVIMKRNFG 352
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIR 204
++ MYG+ L++ A R
Sbjct: 353 DNVLVGNALISMYGKFELVDNAGRVFR 379
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 12/226 (5%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ D W ++I + A++ + M + A P+ T+ SA + + AL G
Sbjct: 71 PRPDAFLWNSLIRTHHCASDFVAALNAHRRMLASS-ARPSPFTVPLAASAAAELGALGVG 129
Query: 62 QYVHSYISTRYDLSV----SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
VH+Y RY L S V ++++ MY +CG V A+++F + +D+++W+ V+S
Sbjct: 130 ASVHAYC-VRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVS 188
Query: 118 GLAMNG-CG---RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
G NG CG R +++ L P+ T + + AC ++ G L V
Sbjct: 189 GCVRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKV 248
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ + + MY + E+A + E+P E + W +L+
Sbjct: 249 -GVGDSPMVISALFSMYSKCHSTEDACSLFPELP-EKDVVSWTSLI 292
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + DVV+W MI GY G ++A+ +F +ME +PN T + +LSAC L
Sbjct: 587 MLQHDVVAWNVMISGYGMHGEAKQALELFGKME-GGSIKPNGVTFLAILSACCHSGLLEE 645
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G+ + + + +Y L + ++++ K G + A V M D W T++S
Sbjct: 646 GRQLFTRMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSAC 704
Query: 120 AMN 122
++
Sbjct: 705 KLH 707
>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 181/296 (61%), Gaps = 9/296 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+++ SW T+J GY E CE+ + VF + + + PN++T +VL AC+SI++L
Sbjct: 408 IPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQT-PNKSTFSSVLCACASIASLDK 466
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G VH I +YD+ VG A+ +MY KCGD+G + QVF + K+ ISW+ +I
Sbjct: 467 GMNVHGKIIKLGIQYDI----FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQ 522
Query: 118 GLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
GLA +G ++L LF M + V P+++ ++++ ACSH GLVD+GL F +M VY I
Sbjct: 523 GLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGI 582
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P+ +HY CVVD+ R+G L EAE FIR +P + E + W ALL+ C+ ++++++ + +
Sbjct: 583 KPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAK 642
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+L + + L+SN +A A RW D + IR +R GLKK GCSW+EV +
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQV 698
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 128/251 (50%), Gaps = 44/251 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ +SW+ MI Y++ G+ EEA+ +F +M + + +PN + LSA +S+ ALS
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALASLRALSA 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ T+ + +G+++I++Y KCG VF+++ K+++ W++++ G +
Sbjct: 335 GINIHGHV-TKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYS 393
Query: 121 MNG--------------------------------CGRQALQLFSLMIINGVFPDDVTFI 148
+NG C + L++F+ ++++G P+ TF
Sbjct: 394 INGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQC-EKVLEVFNTLLVSGQTPNKSTFS 452
Query: 149 ALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++ AC+ +D+G+ + + + Y+I T + DMY + G + ++
Sbjct: 453 SVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGT----ALTDMYAKCGDIGSSKQVFER 508
Query: 206 MPIEAE--WSV 214
MP + E W+V
Sbjct: 509 MPEKNEISWTV 519
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSWT I G+ G EA+ +F + ++ PN+ T +V+ AC + G
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESG-VRPNDVTFTSVVRACGELGDFGLG 203
Query: 62 QYVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ + + LSVS N++I + ++ G++ +A +VF+ + +D++SW+ ++
Sbjct: 204 MSILGLVVKAGFEHYLSVS----NSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDA 259
Query: 119 LAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYE- 175
G R+A ++F M P+ ++++ A+I+ S G ++ L LF M V E
Sbjct: 260 YVETGDLREARRIFDEM------PERNEISWSAMIARYSQSGYAEEALKLFSKM--VQEG 311
Query: 176 IVPQTQHYACVV 187
P +AC +
Sbjct: 312 FKPNISCFACTL 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 27/213 (12%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
+A+I+ +K G V ++ F +++++SW+ ISG NG +AL+LF ++ +GV
Sbjct: 122 SALISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVR 181
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACV----VDMYGRAGLL 196
P+DVTF +++ AC G L D GL MS + +V +HY V + + R G +
Sbjct: 182 PNDVTFTSVVRAC--GELGDFGL----GMSILGLVVKAGFEHYLSVSNSLITLSLRMGEI 235
Query: 197 EEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFD--PIRQELVNKKGVSVGTFA 250
+ A M + + W A+L+A + +FD P R E+ +++
Sbjct: 236 DLARRVFDRME-KRDVVSWTAILDAYVETGDLREARRIFDEMPERNEI---------SWS 285
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283
M ++ + E+A K+ ++ + G K C
Sbjct: 286 AMIARYSQSGYAEEALKLFSKMVQEGFKPNISC 318
>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
Length = 665
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 173/288 (60%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++SW M+ YA F +AV +F MEK E EP+ TL VL C +SA S
Sbjct: 253 MQFKELISWNAMLAVYANNEFHVKAVELFMLMEK-DEVEPDSITLATVLPPCGELSAFSV 311
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I R ++ + L+ NA+++MY CG + A ++F++++ +D+ISW+++IS
Sbjct: 312 GKRIHEIIK-RKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYG 370
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A+ LF M+ G+ PD + F+A+++ACSH GL+ G F +M++ Y I+P+
Sbjct: 371 KHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKA 430
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG + EA FI M IE VWGALL ACRIH N ++ L +
Sbjct: 431 EHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFS 490
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + L+SN +A A RW D +R + G+KK G S +E+
Sbjct: 491 LVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVEL 538
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 90/206 (43%), Gaps = 47/206 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVSW MI G+A G + A+ VF++ + + P+ T+ +L A
Sbjct: 184 MPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA--------- 234
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+GNA K D+ +VF+ + +K++ISW+ +++ A
Sbjct: 235 -------------------MGNA------KPDDIRFVRRVFDNMQFKELISWNAMLAVYA 269
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV--- 177
N +A++LF LM + V PD +T ++ C L F ++EI+
Sbjct: 270 NNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGE-------LSAFSVGKRIHEIIKRK 322
Query: 178 ---PQTQHYACVVDMYGRAGLLEEAE 200
P ++DMY G L++A
Sbjct: 323 NMCPNLLLENALMDMYASCGCLKDAR 348
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFG 61
+ V + +I +A+ +F M A P+ T L +CS+ L G
Sbjct: 83 RTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLG 142
Query: 62 QYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+HS ++ R D +V V ++ I+MY +CG A +VF+ + ++D++SW+ +I+G A
Sbjct: 143 LQIHSAVAKLRLDRNV--YVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFA 200
Query: 121 MNGCGRQALQLFS-LMIINGVFPDDVTFIALISA 153
G +A+++F +++ G PD T ++ A
Sbjct: 201 RVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA 234
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 176/289 (60%), Gaps = 23/289 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW TMIG E +P+ T+ VL AC+S+SAL G+
Sbjct: 416 KDIISWNTMIG----------------------ELKPDSRTMACVLPACASLSALERGKE 453
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI R S V NA++++YVKCG +G+A +F+M+ KD++SW+ +I+G M+G
Sbjct: 454 IHGYI-LRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ F+ M G+ PD+V+FI+++ ACSH GL++QG F M + I P+ +HY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R G L +A F+ +PI + ++WGALL CR + + E+ + + + + +
Sbjct: 573 ACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP 632
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A++WE+ ++R++I + GL+K GCSWIE+ +
Sbjct: 633 ENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 116/213 (54%), Gaps = 17/213 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E + ++++M + + AT+++VL C++ LS G+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKA 272
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS I + ++ ++ N +++MY KCGD+ A++VF + ++++SW+++I+G +
Sbjct: 273 VHSLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---- 178
G A++L M GV D V +++ AC+ G +D G V++ +
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNM 383
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
++ + C ++DMY + G +E A + M ++
Sbjct: 384 ESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK 416
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 38/222 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT+MI GY G + A+ + Q+MEK + + + + ++L AC+ +L
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEK-EGVKLDVVAITSILHACARSGSLDN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++ + V NA+++MY KCG + A VF+ + KD+ISW+T+I L
Sbjct: 371 GKDVHDYIKAN-NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELK 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYE 175
PD T ++ AC+ +++ G IL S+
Sbjct: 430 ---------------------PDSRTMACVLPACASLSALERGKEIHGYILRNGYSS--- 465
Query: 176 IVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+H A +VD+Y + G+L A +P + W+V
Sbjct: 466 ----DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 133/323 (41%), Gaps = 64/323 (19%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V + I + + G E A+ + +K+ E T +VL C+ + + + G+ VH
Sbjct: 66 VTDYNAKILHFCQLGDLENAMELICMCQKS---ELETKTYGSVLQLCAGLKSFTDGKKVH 122
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDV------------------------------- 94
S I + + V +G +++ Y CGD+
Sbjct: 123 SIIKSN-SVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181
Query: 95 -------------GI-------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
GI A ++F+ L +D+ISW+++ISG NG + L ++
Sbjct: 182 KESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQ 241
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRA 193
M+ G+ D T I+++ C++ G + G + A+ + +E + ++DMY +
Sbjct: 242 MMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE--RRINFSNTLLDMYSKC 299
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALM 252
G L+ A +M E W +++ R R+D ++Q + K+GV + A+
Sbjct: 300 GDLDGALRVFEKMG-ERNVVSWTSMIAGYTRDGRSDGAIKLLQQ--MEKEGVKLDVVAIT 356
Query: 253 S--NTFAGADRWEDANKIRDEIR 273
S + A + ++ + D I+
Sbjct: 357 SILHACARSGSLDNGKDVHDYIK 379
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 39/201 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSWT MI GY G+ EA++ F EM + EP+E + +++L ACS L
Sbjct: 493 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM-RDAGIEPDEVSFISILYACSHSGLLEQ 551
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G R+ Y+ D I ++ + D++S + +S
Sbjct: 552 GW--------RF--------------FYIMKNDFNIEPKLEHYACMVDLLSRTGNLS--- 586
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
+ + M + PD + AL+ C + ++ + K V+E+ P+
Sbjct: 587 ---------KAYEFMETLPIAPDATIWGALLCGCRNYHDIE---LAEKVAERVFELEPEN 634
Query: 180 TQHYACVVDMYGRAGLLEEAE 200
T +Y + ++Y A EE +
Sbjct: 635 TGYYVLLANIYAEAEKWEEVK 655
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 181/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++VVSW ++I + + G EAV +F M + N+ TLV +LS+CS + L+
Sbjct: 327 MPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSG-VMANDTTLVAILSSCSHMGDLAL 385
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ HSYI ++++S + NA+I+MY KCG + A+ VF + K+ +SW+ +I LA
Sbjct: 386 GKQAHSYIFDN-NITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALA 444
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A+++F M +GV PD++TF L+SACSH GLVD G F+ M+ + I P
Sbjct: 445 LHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDV 504
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR GLL EA + I++MP++ + VW ALL ACR + N + I ++L+
Sbjct: 505 EHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLE 564
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN ++ + RW+D I + + G+KK S+IE++
Sbjct: 565 LGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEID 613
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 43/272 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +R +VSW +MI GY++ G EEAV +F+EM++ EP+ TLV +LS +
Sbjct: 195 ISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVG-LEPDVFTLVGLLSVSTKHGNFDL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ + + ++V NA+++MY KCG++ A VF+ + KD++SW+ +I+ A
Sbjct: 254 GRFVHLHMVVT-GIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYA 312
Query: 121 MNG-------------------------CGRQ------ALQLFSLMIINGVFPDDVTFIA 149
+G C Q A+ LF M +GV +D T +A
Sbjct: 313 NHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVA 372
Query: 150 LISACSHGGLVDQGLILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++S+CSH G + G +A S +++ I ++DMY + G L+ A MP
Sbjct: 373 ILSSCSHMGDLALGK---QAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP 429
Query: 208 IEAEWSVWGALLNACRIH----RNDEMFDPIR 235
E W ++ A +H EMF+ ++
Sbjct: 430 -EKNAVSWNVIIGALALHGYGKEAIEMFEKMQ 460
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + + +I GY+ +++ +++ M PN+ T+ VL AC++ S
Sbjct: 94 IPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMV-CDGILPNQFTIPFVLKACAAKSCYWL 152
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ S + + V NA++N+YV CG + A +VF+ ++ + ++SW+++I+G +
Sbjct: 153 GVCVHAQ-SFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYS 211
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A+ +F M G+ PD T + L+S + G D G + M V I +
Sbjct: 212 KMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHM-VVTGIEIDS 270
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G L+ A++ +M ++ + W ++NA
Sbjct: 271 IVTNALMDMYAKCGNLKCAKSVFDQM-LDKDVVSWTCMINA 310
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 184/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++G+ EEA+ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 166 MPERDLISWTAMINGFVKKGYQEEALLWFREMQISG-VKPDYVAIIAALNACTNLGALSF 224
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A QVF + + ++SW++VI G A
Sbjct: 225 GLWVHRYVLSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFA 283
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M Y I P+
Sbjct: 284 ANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRI 343
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL AC H N+ + + + + L
Sbjct: 344 EHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLT 403
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 404 DLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 453
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
VSWT+ I G EA F +M EPN T + +LS C ++ S G
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDM-TLAGVEPNHITFIALLSGCGDFTSGSEALGDL 94
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------C 91
+H Y + + L ++ +VG A+I MY K
Sbjct: 95 LHGY-ACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A ++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA +
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + + + + + ++D+Y R G +E A M
Sbjct: 214 NACTNLGALSFGLWVHRYVLS-QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-- 155
IQ N + +SW++ I+ L NG +A + FS M + GV P+ +TFIAL+S C
Sbjct: 25 IQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDF 84
Query: 156 -----------HGGLVDQGLI------------------LFKAMSTVYEIVPQTQH--YA 184
HG GL FK V++ + +
Sbjct: 85 TSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWN 144
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D Y R+G ++ A +MP E + W A++N
Sbjct: 145 TMIDGYMRSGQVDNAAKMFDKMP-ERDLISWTAMING 180
>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
Length = 563
Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 182/285 (63%), Gaps = 2/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+SW +I GY G EEA ++ M + + +P++ATL+ +L+ACSS++ L G+
Sbjct: 232 KDVISWNAIISGYVHNGLGEEATKLYIIMLR-EGIKPDQATLIALLTACSSLALLRQGRS 290
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ + + L S + NA++ MY KCG+V + VF L +D++SW+T+I+ A +G
Sbjct: 291 THAVV-IKAMLESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHG 349
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++ + LF M + G+ P+D+TF++++SAC H G VD+ L LF M + Y I P+ +HY
Sbjct: 350 RYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHY 409
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ RAG LE+A ++I+EMP EAE +VWG LL A + H N ++ + + LV
Sbjct: 410 ACIVDILSRAGQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDF 469
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
S G + ++SN +A A W + N++R +++ G+KK+ G SW E+
Sbjct: 470 ESSGAYVMLSNIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEI 514
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 155/337 (45%), Gaps = 55/337 (16%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA---- 57
P+R+V SW M+ G G E+A S+F +M + + T+V+ L+ C +++
Sbjct: 106 PRRNVASWNAMLAGLVRLGSMEDARSLFDQMPERNVV--SYTTMVDGLARCGEVASAREL 163
Query: 58 ---------LSFGQYVHSYISTRY---------DLSVSNLVG-NAVINMYVKCGDVGIAI 98
+S+ + Y+ + N+V A+I Y K GD+ A
Sbjct: 164 FDAMPTRNLVSWAAMISGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNAR 223
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
++F+ + KD+ISW+ +ISG NG G +A +L+ +M+ G+ PD T IAL++ACS
Sbjct: 224 RLFDGIRAKDVISWNAIISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLA 283
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSV-W 215
L+ QG + V + + ++ C ++ MY + G ++E+E M ++++ V W
Sbjct: 284 LLRQG---RSTHAVVIKAMLESSISICNALMTMYSKCGNVDESELVF--MSLKSQDIVSW 338
Query: 216 GALLNA-------------------CRIHRNDEMFDPIRQELVNKKGV--SVGTFALMSN 254
++ A C + ND F + + V S+ F LM +
Sbjct: 339 NTIIAAYAQHGRYQKVIALFHEMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFS 398
Query: 255 TFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+A + R E I D + R G +K CS+I+ PS
Sbjct: 399 KYAISPRAEHYACIVDILSRAGQLEK-ACSYIKEMPS 434
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 26/204 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGF-CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-L 58
MP+RD VSW ++ G A S+F +M P+ NV+S S I+ L
Sbjct: 42 MPRRDAVSWNALLTALWRAGRDLPAARSLFDDM-------PSR----NVISWNSIIAGCL 90
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ G + + NA++ V+ G + A +F+ + ++++S++T++ G
Sbjct: 91 AHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMPERNVVSYTTMVDG 150
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA G A +LF M + V++ A+IS ++++ LF+AM P
Sbjct: 151 LARCGEVASARELFDAMPTRNL----VSWAAMISGYVDNNMLEEARKLFEAM-------P 199
Query: 179 QTQHYAC--VVDMYGRAGLLEEAE 200
+ AC ++ Y + G L+ A
Sbjct: 200 EKNVVACTAMITGYCKEGDLQNAR 223
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 13/171 (7%)
Query: 73 DLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
D+ N++ N++I + GD+ A F +++ SW+ +++GL G A L
Sbjct: 73 DMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSL 132
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191
F M V V++ ++ + G V LF AM T + +A ++ Y
Sbjct: 133 FDQMPERNV----VSYTTMVDGLARCGEVASARELFDAMPTRNLV-----SWAAMISGYV 183
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACR---IHRNDEMFDPIRQELV 239
+LEEA MP + + + C+ + +FD IR + V
Sbjct: 184 DNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDV 234
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 179/287 (62%), Gaps = 1/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW MI A+R EA +F+EM + + EP++ATLV VL C+ + +
Sbjct: 200 MGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLE-QGFEPDDATLVTVLPVCARLGDVDA 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY + L VGN++++ Y KCG++ A +VFN + K+++SW+ +ISGL
Sbjct: 259 GEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLG 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G ++LF M GV P D TF+ +++ C+H G VD+G +F +M+ +++ P+
Sbjct: 319 LNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKL 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GR G ++EA IR MP+ ++WGALL+ACR H + E+ + +ELV
Sbjct: 379 EHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTHGDREVAEIAAKELVR 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + G + L+SN +A +W + K+R ++ +G+KK G S ++
Sbjct: 439 LEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQSALQ 485
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/271 (21%), Positives = 115/271 (42%), Gaps = 32/271 (11%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ + ++I ++ ++ F M+ T P+ T +L A S + GQ +
Sbjct: 71 NILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLGQCL 130
Query: 65 HSYIST----RYD--------------------------LSVSNLVGNAVINMYVKCGDV 94
H++++ R+ L +V N +IN + K GD+
Sbjct: 131 HAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDL 190
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
I +++F + + ++SW+ +IS LA +A +F M+ G PDD T + ++ C
Sbjct: 191 EIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVC 250
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV 214
+ G VD G + + +VD Y + G LE A EM + S
Sbjct: 251 ARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVS- 309
Query: 215 WGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
W A+++ ++ E+ + +++ +KGV+
Sbjct: 310 WNAMISGLGLNGKGELGVELFEKMA-RKGVT 339
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
K + E+ ++++L + + L +H++ R+ L SN + + +++ +
Sbjct: 2 NKSLQKIESKILHLLHNTKTQTHLP---QIHAHF-LRHGLHHSNQILSHFVSVCTSLHQI 57
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISA 153
A +FN + +++ ++++I + Q+ F+LM + + + PD+ TF L+ A
Sbjct: 58 PYATTIFNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKA 117
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
S+ D G L A T + ++++Y G +E+A EM + E
Sbjct: 118 TSYLRDYDLGQCL-HAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEM-LHREVV 175
Query: 214 VWGALLNA-CRI 224
VW ++N C++
Sbjct: 176 VWNIMINGFCKM 187
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 181/284 (63%), Gaps = 1/284 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW M+ A+ E+A+ +F EM + + EP++A+LV VL C+ + A+
Sbjct: 198 MKERTVVSWNLMMSCLAKNNKEEKALELFNEMLE-QGFEPDDASLVTVLPVCARLGAVDI 256
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY +++ L + VGN++++ Y KCG++ A +FN +A K+++SW+ +ISGLA
Sbjct: 257 GEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLA 316
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G + LF M+ G P+D TF+ +++ C+H GLVD+G LF +MS +++ P+
Sbjct: 317 YNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKL 376
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GR G + EA I MP++ ++WGALL+ACR + + E+ + +ELV
Sbjct: 377 EHYGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALLSACRTYGDREIAENAAKELVR 436
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ + G + L+SN +A RW++ K+R +R G+KK G S
Sbjct: 437 LEPWNSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPGQS 480
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 115/260 (44%), Gaps = 37/260 (14%)
Query: 29 FQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS----TRY-DLSVSNL---- 79
F + KT+ P+E TL + + S++ G VH+++ TR+ + V+ L
Sbjct: 93 FFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYA 152
Query: 80 ---------------------VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
V N +I + K GD+ ++VF + + ++SW+ ++S
Sbjct: 153 SCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSC 212
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA N +AL+LF+ M+ G PDD + + ++ C+ G VD G + ++ +
Sbjct: 213 LAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQD 272
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+VD Y + G L+ A + +M + S W A+++ + E+ + +E+
Sbjct: 273 TINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVS-WNAMISGLAYNGEGEVGVNLFEEM 331
Query: 239 VNKKGVSVGTFALMSNTFAG 258
V+ G F +TF G
Sbjct: 332 VH------GGFEPNDSTFVG 345
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 184/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++GF EEA++ F+EM+ + +P+ ++ L+AC+ + ALSF
Sbjct: 160 MPERDLISWTAMINGFVKKGFHEEALAWFREMQISG-VKPDYVAIIAALAACTHLGALSF 218
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ + D + V N++I++Y +CG V A +VF+ + + ++SW++VI G A
Sbjct: 219 GLWVHRYVMNQ-DFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFA 277
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M + I P+
Sbjct: 278 ANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRI 337
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL ACR H N+ + + + + L
Sbjct: 338 EHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLVKHLS 397
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A WE A+K+R +++ +GLKK+ G S +E++
Sbjct: 398 DLNVKSHSNYVILSNMYAADGIWEGASKMRRKMKGLGLKKQPGFSSVEID 447
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
VSWT+ I + G EA F M + EPN T + +LS C +S+ S G
Sbjct: 30 TVSWTSRITLLSRNGRLAEAAKEFSSM-RLAGVEPNHITFIALLSGCGDVSSGSEALGDL 88
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------C 91
+H Y + + L ++ +VG A++ MY K
Sbjct: 89 LHGY-ACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRS 147
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A+++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA +
Sbjct: 148 GQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAAL 207
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC+H G + GL + + + + + ++D+Y R G +E A +M
Sbjct: 208 AACTHLGALSFGLWVHRYVMN-QDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKM 261
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-- 155
I N + +SW++ I+ L+ NG +A + FS M + GV P+ +TFIAL+S C
Sbjct: 19 ILKLNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDV 78
Query: 156 -----------HGGLVDQGL----------IL--------FKAMSTVYEIVPQTQH--YA 184
HG GL IL F V++ + +
Sbjct: 79 SSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWN 138
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D Y R+G + A EMP E + W A++N
Sbjct: 139 TMIDGYMRSGQVNNAVKLFDEMP-ERDLISWTAMING 174
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKR+VVSWTTM+ G + E A+ VF M PN+ T + + A S+++ LS
Sbjct: 283 MPKRNVVSWTTMMNGCLQGNESEMALQVFNGM-LVDGIRPNQVTFLGAVDAGSNLAGLSE 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH I + N + ++++ +Y KCG++ +A +VF++ KD+ISW+ +I+ A
Sbjct: 342 GQQVHQMI-CKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYA 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ L+ M N P+DVT++ L+SACSH GLVD+GL +F+ M+ I +
Sbjct: 401 HHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRD 460
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C++D+ RAG L++A+ I + ++ S VW ALL C H N+ + D + L+
Sbjct: 461 EHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLL 520
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ L+SN +A A +W++A KIR E+ GLKK+ GCSWIE+
Sbjct: 521 EAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEL 569
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 89/164 (54%), Gaps = 12/164 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI G A G +EA ++F M + NV+S + IS +
Sbjct: 190 MPERNVMSWTTMISGLARSGSADEARALFDGMPER-----------NVVSWNAMISGYAR 238
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + ++ ++ N +I +++ D+ A ++F+ + ++++SW+T+++G
Sbjct: 239 NLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGC 298
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
ALQ+F+ M+++G+ P+ VTF+ + A S+ + +G
Sbjct: 299 LQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEG 342
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDVVSWT M+ YA +G EA ++ +A N T +LS + +
Sbjct: 66 PDRDVVSWTAMVAAYARQGQLHEASALLHR----PDARRNVVTWTALLSGYARARRVDEA 121
Query: 62 QYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R N+V N ++ Y G +G A +F+ + +D SW+ +++ L
Sbjct: 122 RALFDRMPER------NVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWNILLAALV 175
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +LF M V +++ +IS + G D+ LF M P+
Sbjct: 176 RSGTMDEARRLFERMPERNV----MSWTTMISGLARSGSADEARALFDGM-------PER 224
Query: 181 Q--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPI 234
+ ++ Y R ++EA MP E + + W ++ + + E+FD +
Sbjct: 225 NVVSWNAMISGYARNLRIDEALDLFMNMP-ERDVASWNIMITGFIQNKDLKKAQELFDEM 283
Query: 235 RQELV 239
+ V
Sbjct: 284 PKRNV 288
>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
Length = 669
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 181/289 (62%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVVSWT M+ GY + A ++F+EM K E +E LV++LSACS + AL
Sbjct: 384 MTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLLSACSQLGALDK 442
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HSYI +++ + +A+++MY KCG + A ++F + +K +SW+ +I GLA
Sbjct: 443 GREIHSYIE-EMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLA 501
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG G++A++LF M+ + PD +T A++ AC+H G+VD+GL F MS++ +VP
Sbjct: 502 SNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPD 560
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
T+HY C+VD+ GRAG+L+EA FI++MPIE +WG+LL ACR+H ++ I Q +V
Sbjct: 561 TEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIV 620
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
N VG L+SN A +W+D +R + G++K G S ++V
Sbjct: 621 NVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 10/222 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R SW T+I G+ + +EA+ +F+EM P+ TLV+VLSAC+ + L
Sbjct: 283 MPARYTKSWNTLIDGFVQNHEHKEALRIFEEM-LLHGVTPDGITLVSVLSACAQLGELRK 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VHSYI + N++ N++INMY KCGD+ A +VF + KD++SW+ ++ G
Sbjct: 342 GMHVHSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYV 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIV 177
A LF M I V ++ ++L+SACS G +D+G + + M+ ++
Sbjct: 401 KGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLC 460
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ +VDMY + G ++ A R+M + S W A++
Sbjct: 461 LES----ALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMI 497
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWT+MI A+ G ++ + + EM+ + PN+ T++++LSAC A+
Sbjct: 182 MYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ-AEGIIPNKVTIISLLSACGQTQAVDE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V++ + ++ + + NA+I+MY KCG + A++ F + + SW+T+I G
Sbjct: 241 GRWVYNQVG-KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFV 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++AL++F M+++GV PD +T ++++SAC+ G + +G+ + + I
Sbjct: 300 QNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKD-NGICCDN 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
+++MY + G + AE + M
Sbjct: 359 ILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 10/257 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-- 58
M + + W MI GY+ +A++VF+EM + + P+ T+ V+SA ++ + L
Sbjct: 78 MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRR-RGVSPDNYTMAAVVSASAAFAGLKW 136
Query: 59 -SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
S G +H+ + R + V + ++N Y V A +VF + +D++SW+++IS
Sbjct: 137 RSNGDAIHALVR-RIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMIS 195
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G + L++ S M G+ P+ VT I+L+SAC VD+G ++ + + I
Sbjct: 196 ACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK-FGIE 254
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
++ MY + G L +A + MP S W L++ + H + E +
Sbjct: 255 ADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS-WNTLIDGFVQNHEHKEALRIFEE 313
Query: 237 ELVNKKGVSVGTFALMS 253
L++ GV+ L+S
Sbjct: 314 MLLH--GVTPDGITLVS 328
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---D 93
+A P L+ L AC+S + L+ +H + R L+ + V +I + D
Sbjct: 12 QARPIRHHLLAYLDACASRAHLA---ELHGRL-VRAHLTSDSFVAGRLIALLASPAARHD 67
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ A +VF+ +A + W+ +I G + R AL +F M GV PD+ T
Sbjct: 68 MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTM 121
>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
Length = 669
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 181/289 (62%), Gaps = 4/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVVSWT M+ GY + A ++F+EM K E +E LV++LSACS + AL
Sbjct: 384 MTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEM-KIAEVVAHEMALVSLLSACSQLGALDK 442
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HSYI +++ + +A+++MY KCG + A ++F + +K +SW+ +I GLA
Sbjct: 443 GREIHSYIE-EMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLA 501
Query: 121 MNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
NG G++A++LF M+ + PD +T A++ AC+H G+VD+GL F MS++ +VP
Sbjct: 502 SNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSL-GVVPD 560
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
T+HY C+VD+ GRAG+L+EA FI++MPIE +WG+LL ACR+H ++ I Q +V
Sbjct: 561 TEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGKVIGQHIV 620
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
N VG L+SN A +W+D +R + G++K G S ++V
Sbjct: 621 NVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSVQV 669
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 10/222 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R SW T+I G+ + +EA+ +F+EM P+ TLV+VLSAC+ + L
Sbjct: 283 MPARYTKSWNTLIDGFVQNHEHKEALRIFEEM-LLHGVTPDGITLVSVLSACAQLGELRK 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VHSYI + N++ N++INMY KCGD+ A +VF + KD++SW+ ++ G
Sbjct: 342 GMHVHSYIKDN-GICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCGYV 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL---FKAMSTVYEIV 177
A LF M I V ++ ++L+SACS G +D+G + + M+ ++
Sbjct: 401 KGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKDLC 460
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ +VDMY + G ++ A R+M + S W A++
Sbjct: 461 LES----ALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMI 497
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 118/206 (57%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWT+MI A+ G ++ + + EM+ + PN+ T++++LSAC A+
Sbjct: 182 MYERDVVSWTSMISACAQCGHWDKVLKMLSEMQ-AEGIIPNKVTIISLLSACGQTQAVDE 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V++ + ++ + + NA+I+MY KCG + A++ F + + SW+T+I G
Sbjct: 241 GRWVYNQVG-KFGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFV 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++AL++F M+++GV PD +T ++++SAC+ G + +G+ + + I
Sbjct: 300 QNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKD-NGICCDN 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
+++MY + G + AE + M
Sbjct: 359 ILTNSLINMYAKCGDMAAAERVFQTM 384
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 124/257 (48%), Gaps = 10/257 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL-- 58
M + + W MI GY+ +A++VF+EM + + P+ T+ V+SA ++ + L
Sbjct: 78 MAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRR-RGVSPDNYTMAAVVSASAAFAGLKW 136
Query: 59 -SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
S G +H+ + R + V + ++N Y V A +VF + +D++SW+++IS
Sbjct: 137 RSNGDAIHALVR-RIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMIS 195
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A G + L++ S M G+ P+ VT I+L+SAC VD+G ++ + + I
Sbjct: 196 ACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK-FGIE 254
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
++ MY + G L +A + MP S W L++ + H + E +
Sbjct: 255 ADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKS-WNTLIDGFVQNHEHKEALRIFEE 313
Query: 237 ELVNKKGVSVGTFALMS 253
L++ GV+ L+S
Sbjct: 314 MLLH--GVTPDGITLVS 328
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 18/195 (9%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---D 93
+A P L+ L AC+S + L+ +H + R L+ + V +I + D
Sbjct: 12 QARPIRHHLLAYLDACASRAHLA---ELHGRL-VRAHLTSDSFVAGRLIALLASPAARHD 67
Query: 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ A +VF+ +A + W+ +I G + R AL +F M GV PD+ T A++SA
Sbjct: 68 MRYARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSA 127
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGLLEEAEAFIREMP 207
+ GL ++ +V + + V V+ YG +EEA EM
Sbjct: 128 SA----AFAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEM- 182
Query: 208 IEAEWSVWGALLNAC 222
E + W ++++AC
Sbjct: 183 YERDVVSWTSMISAC 197
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 174/289 (60%), Gaps = 5/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW ++IGGY + G +A+ VF+EM+ + EP E TLV+VL AC+ I L
Sbjct: 248 MPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSG-VEPTELTLVSVLGACAEIGELEL 306
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI ++ + VGNA+++MY KCG + +A Q+F ++ +D+ W+ +I G +
Sbjct: 307 GKGVHGYIGSK-GVVADGYVGNALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFS 365
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+AL+LF M + PD VTF+ ++ ACSHGGLVD+G + F++M+ Y+IVP
Sbjct: 366 VHGYSRKALELFDAMRVE---PDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGV 422
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM R G + EA I MP++A +W +L ACR+H + ++ + EL
Sbjct: 423 KHYGCMVDMLCRCGKVAEAYQMINHMPVKANCVLWKMVLAACRVHGHIDLANKAFHELHQ 482
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G +SN +A A RW+ +R ++ G+ K S ++
Sbjct: 483 LMPIDDGDVITVSNVYAEAKRWDVVEHLRTKVIEPGVWKHAAHSQVDAT 531
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 6/160 (3%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA I + + GD+ A +VF + +D +SW+++I G G QAL++F M +GV
Sbjct: 226 NAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQDSGVE 285
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
P ++T ++++ AC+ G ++ G + + + +V +VDMY + G LE A
Sbjct: 286 PTELTLVSVLGACAEIGELELGKGVHGYIGS-KGVVADGYVGNALVDMYAKCGSLELARQ 344
Query: 202 FIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQE 237
M + + W A++ +H + E+FD +R E
Sbjct: 345 LFESMSTR-DITCWNAMIVGFSVHGYSRKALELFDAMRVE 383
>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/270 (39%), Positives = 176/270 (65%), Gaps = 5/270 (1%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN 78
+G EA+ +F +M+K K P + L +VLSAC+++ AL G+++H+Y + R + +
Sbjct: 232 KGCFMEALEIFHQMQKEK-IRPRKFVLPSVLSACANLGALDQGRWIHTY-AKRNSIQLDG 289
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
++G ++++MY KCG + +A +VF ++ K++ SW+ +I GLAM+G A+ LFS M IN
Sbjct: 290 VLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN 349
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198
P+++TF+ +++AC+HGGLV +GL +F +M Y + PQ +HY C+VD+ GRAGLL E
Sbjct: 350 ---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTE 406
Query: 199 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258
AE + +P E +VWGALL ACR H N E+ + + + L+ + + G + L+SN +A
Sbjct: 407 AEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAK 466
Query: 259 ADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
A RWE+ ++R ++ G+K G S I++
Sbjct: 467 AGRWEEVGEVRKLMKERGIKTTPGTSIIDL 496
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 16/247 (6%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V W MI E +A+ ++ EM PN+ T VL ACS ++ G
Sbjct: 120 KPNVFLWNCMIKVCIENNEPFKAILLYYEM-MVAHFRPNKYTYPAVLKACSDAGVVAEGV 178
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH+++ ++ L + ++ I MY G + A ++ + D +
Sbjct: 179 QVHAHL-VKHGLGGDGHILSSAIRMYASFGRLVEARRILD-----DKGGEVDAVCMPDRK 232
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF---KAMSTVYEIVPQ 179
GC +AL++F M + P +++SAC++ G +DQG + K S + V
Sbjct: 233 GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG 292
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQEL 238
T +VDMY + G ++ A +M E S W A++ +H R ++ D +
Sbjct: 293 TS----LVDMYAKCGRIDLAWEVFEKMS-NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD 347
Query: 239 VNKKGVS 245
+N ++
Sbjct: 348 INPNEIT 354
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 82/199 (41%), Gaps = 42/199 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++V SW MIGG A G E+A+ +F +M + PNE T V VL+AC+ +
Sbjct: 315 MSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM----DINPNEITFVGVLNACAHGGLVQK 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + + + Y G+ Q+ + + ++ L
Sbjct: 371 GLTIFNSMRKEY----------------------GVEPQIEH---------YGCIVDLLG 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A ++ S + P + AL+ AC G V+ G + K + E+ PQ
Sbjct: 400 RAGLLTEAEKVVSSIPTE---PTPAVWGALLGACRKHGNVELGERVGKIL---LELEPQN 453
Query: 181 Q-HYACVVDMYGRAGLLEE 198
Y + ++Y +AG EE
Sbjct: 454 SGRYTLLSNIYAKAGRWEE 472
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 185/298 (62%), Gaps = 12/298 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA----------EPNEATLVNVLS 50
M RD+V+W TMI GY E+A+ + +M+ + +PN TL+ +L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
+C+++SAL+ G+ +H+Y + + +L+ VG+A+++MY KCG + ++ +VF+ + K++I
Sbjct: 526 SCAALSALAKGKEIHAY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+W+ +I M+G G++A+ L +M++ GV P++VTFI++ +ACSH G+VD+GL +F M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDE 229
Y + P + HYACVVD+ GRAG ++EA + MP + + W +LL A RIH N E
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + Q L+ + + L++N ++ A W+ A ++R ++ G++K+ GCSWIE
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + W MI GY++ +EA+ +F ME++ N T+ V+ AC A S
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++ R L V N +++MY + G + IA+++F + +D+++W+T+I+G
Sbjct: 424 KEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 121 MNGCGRQALQLFSLM------IING-----VFPDDVTFIALISACSHGGLVDQGLILFKA 169
+ AL L M + G + P+ +T + ++ +C+ + +G + A
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-HA 541
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-D 228
+ + + +VDMY + G L+ + ++P + W ++ A +H N
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 600
Query: 229 EMFDPIRQELVN 240
E D +R +V
Sbjct: 601 EAIDLLRMMMVQ 612
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI---SALS 59
+R+ VSW ++I E A+ F+ M + EP+ TLV+V++ACS++ L
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLM 219
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+Y + +L+ + + N ++ MY K G + + + +D+++W+TV+S L
Sbjct: 220 MGKQVHAYGLRKGELN--SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N +AL+ M++ GV PD+ T +++ ACSH ++ G
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T++ + EA+ +EM + EP+E T+ +VL ACS + L G+
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y L ++ VG+A+++MY C V +VF+ + + + W+ +I+G + N
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIV 177
++AL LF M + G+ + T ++ AC G + G ++ + + V
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFV 442
Query: 178 PQTQHYACVVDMYGRAGLLEEA 199
T ++DMY R G ++ A
Sbjct: 443 QNT-----LMDMYSRLGKIDIA 459
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ EAV + +M +P+ +L A + + + G+ +H+++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDM-IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 69 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ V ++ V N ++N+Y KCGD G +VF+ ++ ++ +SW+++IS L
Sbjct: 124 -YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--C 185
AL+ F M+ V P T +++++ACS+ + +GL++ K + + +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241
Query: 186 VVDMYGRAGLLEEAEAFI 203
+V MYG+ G L ++ +
Sbjct: 242 LVAMYGKLGKLASSKVLL 259
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD V+W +I YA ++A+ +F+EM K E+EP++ T + +L ACSS+ AL
Sbjct: 182 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 241
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ V +Y + + V N++I MY++CG V A +VF+ K +++W+ +ISGL
Sbjct: 242 FGEQVWAY-AEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 300
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G A+ +F MI + V PD+ TF ++SACSH GLVD+G F M Y + P
Sbjct: 301 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 360
Query: 180 TQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY C+VD+ GRAGLL+EA F+ EM + + ++W LL ACRIH + ++ + + L
Sbjct: 361 VRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 420
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ K G + L+ NT+A W ++IR ++ G++ GC+ +E N ++
Sbjct: 421 IELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTV 474
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM--I 136
L+ +++ Y GD A ++F+ + +D ++W+ +I+ A N + AL+LF M
Sbjct: 157 LLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGK 216
Query: 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
+ PDDVT I L+ ACS G +D G ++ A + + + + ++ MY R G +
Sbjct: 217 DSESEPDDVTCILLLQACSSLGALDFGEQVW-AYAEEHGYGGELKVRNSLITMYLRCGCV 275
Query: 197 EEAEAFIREMPIEAEWSVWGALLN 220
++A P + W A+++
Sbjct: 276 DKAYRVFSGTP-QKSVVTWTAMIS 298
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 185/298 (62%), Gaps = 12/298 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA----------EPNEATLVNVLS 50
M RD+V+W TMI GY E+A+ + +M+ + +PN TL+ +L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
+C+++SAL+ G+ +H+Y + + +L+ VG+A+++MY KCG + ++ +VF+ + K++I
Sbjct: 526 SCAALSALAKGKEIHAY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+W+ +I M+G G++A+ L +M++ GV P++VTFI++ +ACSH G+VD+GL +F M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDE 229
Y + P + HYACVVD+ GRAG ++EA + MP + + W +LL A RIH N E
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + Q L+ + + L++N ++ A W+ A ++R ++ G++K+ GCSWIE
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + W MI GY++ +EA+ +F ME++ N T+ V+ AC A S
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++ R L V N +++MY + G + IA+++F + +D+++W+T+I+G
Sbjct: 424 KEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 121 MNGCGRQALQLFSLM------IING-----VFPDDVTFIALISACSHGGLVDQGLILFKA 169
+ AL L M + G + P+ +T + ++ +C+ + +G + A
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-HA 541
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-D 228
+ + + +VDMY + G L+ + ++P + W ++ A +H N
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 600
Query: 229 EMFDPIRQELVN 240
E D +R +V
Sbjct: 601 EAIDLLRMMMVQ 612
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI---SALS 59
+R+ VSW ++I E A+ F+ M + EP+ TLV+V++ACS++ L
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLM 219
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+Y + +L+ + + N ++ MY K G + + + +D+++W+TV+S L
Sbjct: 220 MGKQVHAYGLRKGELN--SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N +AL+ M++ GV PD+ T +++ ACSH ++ G
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T++ + EA+ +EM + EP+E T+ +VL ACS + L G+
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y L ++ VG+A+++MY C V +VF+ + + + W+ +I+G + N
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIV 177
++AL LF M + G+ + T ++ AC G + G ++ + + V
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFV 442
Query: 178 PQTQHYACVVDMYGRAGLLEEA 199
T ++DMY R G ++ A
Sbjct: 443 QNT-----LMDMYSRLGKIDIA 459
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ EAV + +M +P+ +L A + + + G+ +H+++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDM-IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 69 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ V ++ V N ++N+Y KCGD G +VF+ ++ ++ +SW+++IS L
Sbjct: 124 -YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--C 185
AL+ F M+ V P T +++++ACS+ + +GL++ K + + +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241
Query: 186 VVDMYGRAGLLEEAEAFI 203
+V MYG+ G L ++ +
Sbjct: 242 LVAMYGKLGKLASSKVLL 259
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 182/292 (62%), Gaps = 8/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D V+W +MI +A+ G EEA+ +F++M + + N T+ ++LSAC+ + A+ +
Sbjct: 511 MSAKDEVTWNSMISSFAQNGEPEEALDLFRQM-IMEGVKYNNVTISSILSACAGLPAIYY 569
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H I R DL +A+I+MY KCG++ +A++VF + K+ +SW+++IS
Sbjct: 570 GKEIHGIIIKGPIRADL----FAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIIS 625
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
+G ++++ L M G D VTF+ALISAC+H G V +GL LF+ M+ Y I
Sbjct: 626 AYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIE 685
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
PQ +H +C+VD+Y RAG L++A FI +MP + + +WGALL+ACR+HRN E+ + QE
Sbjct: 686 PQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQE 745
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
L + G + LMSN A A RW+ +K+R ++ ++K G SW++VN
Sbjct: 746 LFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVN 797
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 16/227 (7%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV +TMI GY E AV +F+ + +PN + + L AC+S++A+ GQ +
Sbjct: 414 DVVIGSTMISGYVLNRMSEAAVKMFRYLLALG-IKPNAVMVASTLPACASMAAMRIGQEL 472
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H Y+ + V +A+++MY KCG + ++ +F+ ++ KD ++W+++IS A NG
Sbjct: 473 HGYV-LKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGE 531
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF MI+ GV ++VT +++SAC+ GL ++ I+ + A
Sbjct: 532 PEEALDLFRQMIMEGVKYNNVTISSILSACA-------GLPAIYYGKEIHGIIIKGPIRA 584
Query: 185 ------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMYG+ G LE A MP + E S W ++++A H
Sbjct: 585 DLFAESALIDMYGKCGNLELALRVFEHMPEKNEVS-WNSIISAYGAH 630
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 124/238 (52%), Gaps = 7/238 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D+V+W MI G + G ++A+ +F +M+K+ +P+ TL ++L A + ++
Sbjct: 309 MPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSG-LQPDSVTLASLLPALTELNGFKQ 367
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R V + +A++++Y KC DV +A VF+ D++ ST+ISG
Sbjct: 368 GKEIHGYI-VRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYV 426
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQ 179
+N A+++F ++ G+ P+ V + + AC+ + G L + YE
Sbjct: 427 LNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCY 486
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
+ + ++DMY + G L+ + +M + E + W +++++ + +E D RQ
Sbjct: 487 VE--SALMDMYSKCGRLDLSHYMFSKMSAKDEVT-WNSMISSFAQNGEPEEALDLFRQ 541
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 89/163 (54%), Gaps = 2/163 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD V W M+ GY + G AV +F+ M + +PN ATL LS C++ + L
Sbjct: 208 MDERDCVLWNVMMDGYVKAGDVASAVGLFRVM-RASGCDPNFATLACFLSVCAAEADLLS 266
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H+ ++ +Y L V N +++MY KC + A ++F ++ D+++W+ +ISG
Sbjct: 267 GVQLHT-LAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCV 325
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG AL+LF M +G+ PD VT +L+ A + QG
Sbjct: 326 QNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQG 368
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 6/218 (2%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
+ W +I G+ G AV + +M P+ TL V+ +C+++ AL G+ VH
Sbjct: 111 LPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVH 170
Query: 66 SYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+TR L VG+A+I MY G + A +VF+ + +D + W+ ++ G G
Sbjct: 171 R--TTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGD 228
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
A+ LF +M +G P+ T +S C+ + G+ L ++ Y + P+
Sbjct: 229 VASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL-HTLAVKYGLEPEVAVAN 287
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+V MY + LEEA MP + + W +++ C
Sbjct: 288 TLVSMYAKCQCLEEAWRLFGLMPRD-DLVTWNGMISGC 324
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 182/290 (62%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++GF EEA++ F+EM+ + P+ ++ L+AC+++ ALSF
Sbjct: 163 MPERDLISWTAMITGFVKKGFHEEALAWFREMQISG-VNPDYVAIIAALAACTNLGALSF 221
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G + H Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A
Sbjct: 222 GLWAHRYVVSQ-DFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFA 280
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++G F+ M T Y I P+
Sbjct: 281 ANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRI 340
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+H+ C+VD+Y RAG LE+A + MP++ V G+LL ACR H N + + + + +
Sbjct: 341 EHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVIGSLLAACRNHGNHTILAERLMKHIS 400
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 401 DLDVKGHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEID 450
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
+VSWT+ I + EA F +M + EPN T +++LSAC + + S
Sbjct: 33 IVSWTSRITLLSRDDRLAEAAREFSDM-RLAGIEPNHITFISLLSACGNFPSGSEALSDL 91
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------C 91
+H Y + + L S+ +VG A++ MY K
Sbjct: 92 LHGY-ACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRN 150
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A++VF+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA +
Sbjct: 151 GQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQISGVNPDYVAIIAAL 210
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + + + + ++D+Y R G +E A M
Sbjct: 211 AACTNLGALSFGLWAHRYVVS-QDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTM 264
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
+ + +V IQ N + ++SW++ I+ L+ + +A + FS M + G+ P+ +T
Sbjct: 11 LTTRKNNVNPKIQKLNQSTSETIVSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHIT 70
Query: 147 FIALISAC 154
FI+L+SAC
Sbjct: 71 FISLLSAC 78
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 181/287 (63%), Gaps = 3/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD++S T MI G+ ++G EEA++ F+EM+ EP+ ++ L+AC+++ ALSFG +
Sbjct: 146 RDLISXTXMINGFVKKGLNEEALAWFREMQ-VSGVEPDYVAIIAALAACTNLGALSFGLW 204
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH Y+ ++ D + V N++I++Y +CG V A QVF+ + + ++SW++VI G A NG
Sbjct: 205 VHRYVVSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANG 263
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
++L F M PD VTF ++ACSH GLV++G+ F+AM Y I P+ +HY
Sbjct: 264 HAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHY 323
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-EMFDPIRQELVNKK 242
C+VD+Y RAG LE+A + MP++ V G+LL ACR H ND E+ + + + L K
Sbjct: 324 GCLVDLYSRAGRLEDALKVVESMPMKPNEVVIGSLLAACRTHGNDTELAERMMKHLSELK 383
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 384 VKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 430
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VSWT+ I + G EA M + EPN TL+ +LS CS L G +H
Sbjct: 34 TVSWTSRITLLSRNGRLAEAAKELTAM-RLAGVEPNHITLIALLSGCSDCEPL--GDSLH 90
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--------------YKDMIS 111
Y +VG A++ MY K A VF+ + +D+IS
Sbjct: 91 GYACKLGFDRNHVMVGTAILGMYSKRRRFRKARLVFDRMGDXNSVTWNTMIDGYXRDLIS 150
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
+ +I+G G +AL F M ++GV PD V IA ++AC++ G + GL + + +
Sbjct: 151 XTXMINGFVKKGLNEEALAWFREMQVSGVEPDYVAIIAALAACTNLGALSFGLWVHRYVV 210
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ + + ++D+Y R G +E A +M
Sbjct: 211 S-QDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKM 244
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 42/209 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR VVSW ++I G+A G E++ F++M++ + +P+ T L+ACS + +
Sbjct: 244 MEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEER-FKPDAVTFTGALTACSHVGLVEE 302
Query: 61 GQYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G V + + + D +S + + ++++Y + G + A++V + K
Sbjct: 303 G--VRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVESMPMK----------- 349
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVYEIV 177
P++V +L++AC +HG + + K +S + V
Sbjct: 350 -----------------------PNEVVIGSLLAACRTHGNDTELAERMMKHLSELK--V 384
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+Y + +MY G E A R+M
Sbjct: 385 KSHSNYVILSNMYAADGKWEGASKMRRKM 413
>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Vitis vinifera]
Length = 748
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 178/288 (61%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +++W ++I G EEA + +EM EPN T+ +VL C+ ++ L
Sbjct: 398 MEAKSLITWNSIISGCCHMDRSEEASFLLREM-LLFGIEPNYVTIASVLPLCARVANLQH 456
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y++ R D L+ NA+++MY + G V A +VF+ML +D ++++++I+G
Sbjct: 457 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 516
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G+ AL+LF M + PD +T IA++SACSH GLV QG +LF+ M ++Y + P
Sbjct: 517 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHL 576
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+ D++GRAGLL +A+ IR MP + ++W L+ ACRIHRN E+ + ++L+
Sbjct: 577 EHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLE 636
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
K + G + L++N +A A W K+R +R +G++K GC+W++V
Sbjct: 637 MKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 684
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 42/268 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I Y GFC++A+S +++M K K P+ T +VL AC L FG+ VH I
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVK-KGIRPDNFTYPSVLKACGEELDLGFGKEVHESI 227
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS----------- 117
+ + S +V NA+I+MY KCG VGIA +F+ + +D +SW+++IS
Sbjct: 228 NAS-RIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEA 286
Query: 118 ------------------------GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
G G + AL+L S M G D V I + A
Sbjct: 287 FELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGA 346
Query: 154 CSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
CSH G G + A+ + + V ++ ++ MY R L+ A + M ++
Sbjct: 347 CSHIGDAKLGKEIHSFAIRSCFGEVDTVKN--ALITMYSRCKDLKHAYLLFQLMEAKS-L 403
Query: 213 SVWGALLNA-CRIHRNDEMFDPIRQELV 239
W ++++ C + R++E +R+ L+
Sbjct: 404 ITWNSIISGCCHMDRSEEASFLLREMLL 431
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 2/196 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W T+ GGY G + A+ + +M K + + L+ L ACS I G+ +
Sbjct: 301 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCG-SHLDSVALIIGLGACSHIGDAKLGKEI 359
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS+ + R + V NA+I MY +C D+ A +F ++ K +I+W+++ISG
Sbjct: 360 HSF-AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDR 418
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A L M++ G+ P+ VT +++ C+ + G M+ + +
Sbjct: 419 SEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN 478
Query: 185 CVVDMYGRAGLLEEAE 200
+VDMY R+G + EA
Sbjct: 479 ALVDMYARSGKVLEAR 494
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 190/291 (65%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV SWT MI GY + EA+ +F+ M+ + +P+E ++ VLSAC+ + AL G++
Sbjct: 207 KDVFSWTAMISGYTQAHNPNEAIKLFRRMQ-LENVKPDEIAILAVLSACADLGALHLGEW 265
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+YI ++ LS + N++I+MY K G++ A+++F + +K +I+W+T+I+GLA++G
Sbjct: 266 IHNYIE-KHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHG 324
Query: 124 CGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G++AL++FS M + V P++VTFIA++SACSH GLV+ G F +M + Y I P+ +H
Sbjct: 325 LGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEH 384
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAG L+EA+ + MP EA ++WG+LL A + E+ + + L +
Sbjct: 385 YGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAASTRCGDAELAEEALRHLTVLE 444
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G ++L+SNT+A RW ++ +R ++ G++K G S+IEVN ++
Sbjct: 445 PGHCGNYSLLSNTYASLGRWNESRMVRKVMQDAGVEKVPGVSFIEVNNIVY 495
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMII 137
V NA+I YVK GDV A ++F+ + KD+ SW+ +ISG +A++LF M +
Sbjct: 178 VLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQL 237
Query: 138 NGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
V PD++ +A++SAC+ G + G + + + +IVP Y ++DMY ++G
Sbjct: 238 ENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKIVPL---YNSLIDMYAKSGN 294
Query: 196 LEEAEAFIREM 206
+ +A M
Sbjct: 295 IRKALELFENM 305
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +++WTTMI G A G +EA+ VF MEK +PNE T + +LSACS + +
Sbjct: 305 MKHKTIITWTTMIAGLALHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVEL 364
Query: 61 GQYVHSYISTRY 72
G+ + + +RY
Sbjct: 365 GRDYFTSMRSRY 376
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D V W MI +++ G E A+ +F++M T + + +L LSAC++ AL +
Sbjct: 541 MPVKDSVCWNLMIVSFSQNGKPELAIDLFRQM-GTSGTKFDSVSLSATLSACANYPALYY 599
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ R V + +I+MY KCG + +A VF+M+ +K+ +SW+++I+
Sbjct: 600 GKELHCFV-VRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYG 658
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R+ L LF M+ G+ PD VTF+ ++SAC H GLVD+G+ F+ M+ Y I +
Sbjct: 659 NHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARM 718
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+VD+YGRAG L EA I+ MP + WG+LL ACR+H N E+ + LV
Sbjct: 719 EHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVE 778
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L+SN AGA WE K+R ++ G++K G SWI+VN
Sbjct: 779 LDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVN 827
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 111/214 (51%), Gaps = 13/214 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D V+W +I GY + GF +EAV++F+ M T + + T + L + +L +
Sbjct: 339 MPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMV-TSGVKLDSITFASFLPSVLKSGSLKY 397
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VHSYI R+ + + +A++++Y K GDV +A + F D+ + +ISG
Sbjct: 398 CKEVHSYI-VRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYV 456
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-----ILFKAMSTVYE 175
+NG +AL LF +I G+ P+ +T +++ AC+ + G IL K + V +
Sbjct: 457 LNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQ 516
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ + MY ++G L+ A F R MP++
Sbjct: 517 VGSSITY------MYAKSGRLDLAYQFFRRMPVK 544
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 2/158 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RD + W M+ GY + G A+ FQEM + +PN + V +LS C++ +
Sbjct: 238 LPVRDCILWNVMLNGYVKNGDFNSALGTFQEM-RNSCVKPNSVSFVCLLSVCATRGIVRA 296
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + R V N +I MY KCG++ A ++F+++ D ++W+ +I+G
Sbjct: 297 GIQLHGLV-IRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYV 355
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
NG +A+ LF M+ +GV D +TF + + + G
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 5/229 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV T MI GY G EA+++F+ + + + PN T+ +VL AC+++++L G+ +
Sbjct: 444 DVAVCTAMISGYVLNGLNVEALNLFRWLIQ-EGMVPNCLTMASVLPACAALASLKLGKEL 502
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H I + +V VG+++ MY K G + +A Q F + KD + W+ +I + NG
Sbjct: 503 HCDILKKGLENVCQ-VGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGK 561
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
A+ LF M +G D V+ A +SAC++ + G L + T +
Sbjct: 562 PELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKEL-HCFVVRNSFISDTFVAS 620
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G L A + M + E S W +++ A H R E D
Sbjct: 621 TLIDMYSKCGKLALARSVFDMMDWKNEVS-WNSIIAAYGNHGRPRECLD 668
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 6/214 (2%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ W +I G++ G + A+ F M + A P++ T V+ AC ++ + + VH
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVA-PDKYTFPYVIKACGGLNNVPLCKMVHE 201
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
++ + +G+++I +Y G + A +F+ L +D I W+ +++G NG
Sbjct: 202 -LARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFN 260
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYAC 185
AL F M + V P+ V+F+ L+S C+ G+V G+ L + + +E P +
Sbjct: 261 SALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN--T 318
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++ MY + G L +A MP + + W L+
Sbjct: 319 IITMYSKCGNLFDARKIFDIMP-QTDTVTWNGLI 351
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
+G+ ++ MYV C +F L + W+ +I G +M GC AL F M+ +
Sbjct: 113 LGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSN 172
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRA 193
V PD TF +I AC GGL + L V+E+ + + ++ +Y
Sbjct: 173 VAPDKYTFPYVIKAC--GGLNNVPLC-----KMVHELARSMGFHMDLFIGSSLIKLYTDN 225
Query: 194 GLLEEAEAFIREMPIEAEWSVWGALLNA 221
G + +A+ E+P+ + +W +LN
Sbjct: 226 GYIHDAKYLFDELPVR-DCILWNVMLNG 252
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VSWT MI GY G EA+ F+EM+ EP+E +L++VL +C+ + +L
Sbjct: 201 MIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQ-LAGIEPDEISLISVLPSCAHLGSLEL 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y R L + V NA+I MY KCG + AIQ+F KD+ISWST+ISG A
Sbjct: 260 GKWIHMYAERRGLLKQTG-VCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A + F M V P+ +TF+ L+SACSH GL QGL F M Y+I P+
Sbjct: 319 YHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKI 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ RAG LE A + MP++ + +WG+LL++CR N ++ LV
Sbjct: 379 EHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVE 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +G + L++N +A +WED +++R IR+ +KK GCS IEVN
Sbjct: 439 VEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVN 487
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 140/305 (45%), Gaps = 41/305 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V + ++I Y + + +++++ + P+ T + +C+S+ + G+ V
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ ++ + NA+I+MY+K D+ A +VF+ ++ +D+ISW++++SG A G
Sbjct: 132 HGHL-YKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQ 190
Query: 125 GRQALQLFSLMI-------------------------------INGVFPDDVTFIALISA 153
++A LF LMI + G+ PD+++ I+++ +
Sbjct: 191 MKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+H G ++ G + + ++ QT +++MY + G+L +A + + S
Sbjct: 251 CAHLGSLELGKWI-HMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVIS 309
Query: 214 VWGALLNAC----RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR 269
W +++ HR E F +++ V G+ TF + + + W+ K
Sbjct: 310 -WSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGI---TFLGLLSACSHVGLWQQGLKYF 365
Query: 270 DEIRR 274
D +R+
Sbjct: 366 DMMRQ 370
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
+ LS S+ + ++++ K GD+ A ++FN ++ ++ ++++I N +++
Sbjct: 36 HGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRI 95
Query: 132 FSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVD 188
+ ++ + FPD TF + +C+ G G + +Y+ P+ ++D
Sbjct: 96 YKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGK---QVHGHLYKFGPRFHVVTENALID 152
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
MY + L +A EM E + W +LL+
Sbjct: 153 MYMKFDDLVDAHKVFDEMS-ERDVISWNSLLSG 184
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME-KTKEAEPNEATLVNVLSACSSISALS 59
MP RD V+W +I YA ++A+ +F+EM K E+EP++ T + +L ACSS+ AL
Sbjct: 196 MPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGKDSESEPDDVTCILLLQACSSLGALD 255
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ V +Y + + V N++I MY++CG V A +VF+ K +++W+ +ISGL
Sbjct: 256 FGEQVWAY-AEEHGYGGELKVRNSLITMYLRCGCVDKAYRVFSGTPQKSVVTWTAMISGL 314
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG G A+ +F MI + V PD+ TF ++SACSH GLVD+G F M Y + P
Sbjct: 315 AANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPN 374
Query: 180 TQHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY C+VD+ GRAGLL+EA F+ EM + + ++W LL ACRIH + ++ + + L
Sbjct: 375 VRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 434
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ K G + L+ NT+A W ++IR ++ G++ GC+ +E N ++
Sbjct: 435 IELKAQQAGDYVLLLNTYAAVGEWSKVSEIRKLMQEEGIQTTPGCTTVEHNGTV 488
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM--I 136
L+ +++ Y GD A ++F+ + +D ++W+ +I+ A N + AL+LF M
Sbjct: 171 LLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEMRGK 230
Query: 137 INGVFPDDVTFIALISACSHGGLVDQG 163
+ PDDVT I L+ ACS G +D G
Sbjct: 231 DSESEPDDVTCILLLQACSSLGALDFG 257
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 176/294 (59%), Gaps = 6/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSISAL 58
MP R+VVSW MI GYA+ G + V VF+ + K +P+ T++ +L AC +++ L
Sbjct: 456 MPTRNVVSWNLMIAGYAQNG---DIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGL 512
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ VH+ + + L +V ++I MY KCG V A VF+ ++ +D ++W+ +++G
Sbjct: 513 ERGKLVHAE-AVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAG 571
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G G +A+ LF M+ V P+++T A+ISACS GLV +G +F+ M +++ P
Sbjct: 572 YGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ QHY C+VD+ GRAG L+EAE FI+ MP E + SVW ALL AC+ H N ++ + +
Sbjct: 632 RKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + +SN +A A RW+D+ K+R + GLKK G S IE++ I
Sbjct: 692 LELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRI 745
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 18/288 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W++MI YA +A F+ M EPN T +++L AC++ S L
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN-IEPNRITFLSILKACNNYSILEK 175
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + V A+I MY KCG++ +A +VF+ + ++++SW+ +I A
Sbjct: 176 GRKIHTIVKA-MGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANA 234
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ +A +L+ M+ G+ P+ VTF++L+++C+ +++G + S + E +T
Sbjct: 235 QHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGR---RIHSHISERGLET 291
Query: 181 QHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRNDEMFDPIRQ 236
++ MY + ++EA M S W A++ A +++ E D + Q
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS-WSAMIAGYAQSGYKDKESIDEVFQ 350
Query: 237 --ELVNKKGVSVGTFALMS----NTFAGADRWEDANKIRDEIRRMGLK 278
E + ++GV MS T GA E +I E+ ++G +
Sbjct: 351 LLERMRREGVFPNKVTFMSILRACTAHGA--LEQGRQIHAELSKVGFE 396
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 123/253 (48%), Gaps = 36/253 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAV--SVFQEMEKTKEAE--PNEATLVNVLSACSSIS 56
M KRDV+SW+ MI GYA+ G+ ++ VFQ +E+ + PN+ T +++L AC++
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378
Query: 57 ALSFGQYVHSYIST---RYDLSVSNLVGN---------------------------AVIN 86
AL G+ +H+ +S D S+ + N + ++
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLS 438
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MY+KCGD+ A +VF+ + ++++SW+ +I+G A NG + +L S M G PD VT
Sbjct: 439 MYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVT 498
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I ++ AC +++G L A + + T ++ MY + G + EA +M
Sbjct: 499 VITILEACGALAGLERGK-LVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKM 557
Query: 207 PIEAEWSVWGALL 219
+ W A+L
Sbjct: 558 S-NRDTVAWNAML 569
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 109/242 (45%), Gaps = 10/242 (4%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T V+ C+ G+ VH + + + +GN++IN Y K DV A QV
Sbjct: 55 NSNTYGCVIEHCAKARRFEDGKMVHKQLD-ELGVEIDIYLGNSLINFYSKFEDVASAEQV 113
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + +D+++WS++I+ A N +A F M + P+ +TF++++ AC++ ++
Sbjct: 114 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSIL 173
Query: 161 DQGL---ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
++G + KAM ++ T ++ MY + G + A +M E W A
Sbjct: 174 EKGRKIHTIVKAMGMETDVAVAT----ALITMYSKCGEISVACEVFHKMT-ERNVVSWTA 228
Query: 218 LLNACRIHRN-DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
++ A HR +E F+ Q L + TF + N+ + +I I G
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288
Query: 277 LK 278
L+
Sbjct: 289 LE 290
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 223 bits (568), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 122/317 (38%), Positives = 182/317 (57%), Gaps = 31/317 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN------------------- 41
MP+RDVVSWT++I GY++ GF ++A VF+ M + N
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240
Query: 42 -EATLVNV----------LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
L NV LSAC+ + AL G+++H YI + + + + + VI+MY K
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIE-KSGIELDSKLATTVIDMYCK 299
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG + A +VFN L K + SW+ +I GLAM+G G A++LF M V PD +TF+ +
Sbjct: 300 CGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNV 359
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+SAC+H GLV++G F+ M+ V + P +H+ C+VD+ GRAGLLEEA I EMP+
Sbjct: 360 LSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNP 419
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ V GAL+ ACRIH N E+ + I ++++ + + G + L++N +A A RWED K+R
Sbjct: 420 DAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRK 479
Query: 271 EIRRMGLKKKTGCSWIE 287
+ G+KK G S IE
Sbjct: 480 LMNDRGVKKAPGFSMIE 496
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 119/280 (42%), Gaps = 39/280 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + T+ GY + ++ M K PN+ T ++ AC A+
Sbjct: 80 IPHPDAYIYNTIFRGYLRWQLARNCIFMYSRM-LHKSVSPNKFTYPPLIRACCIDYAIEE 138
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ ++ N +I+MYV + A +VF+ + +D++SW+++I+G +
Sbjct: 139 GKQIHAHV-LKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYS 197
Query: 121 MNGCGRQALQLFSLMI-------------------------------INGVFPDDVTFIA 149
G +A ++F LM + V D +
Sbjct: 198 QWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAAS 257
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++SAC+ G ++QG + + I ++ V+DMY + G LE+A E+P +
Sbjct: 258 MLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKCGCLEKASEVFNELP-Q 315
Query: 210 AEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVS 245
S W ++ +H E+F + +E+V G++
Sbjct: 316 KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGIT 355
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 41/227 (18%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGDVGIAIQVFNMLAY 106
L +CS+++ L QY HS I R LS N VI K GD+ A++VF+ + +
Sbjct: 27 LDSCSTMAELK--QY-HSQI-IRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPH 82
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--- 163
D ++T+ G R + ++S M+ V P+ T+ LI AC +++G
Sbjct: 83 PDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQI 142
Query: 164 ----------------------LILFKAMST---VYEIVPQTQ--HYACVVDMYGRAGLL 196
+ F+++ V++ +PQ + ++ Y + G +
Sbjct: 143 HAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFV 202
Query: 197 EEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQELV 239
++A MP E W A++ A R+H +FD +R E V
Sbjct: 203 DKAREVFELMP-ERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENV 248
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 185/291 (63%), Gaps = 4/291 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWTTMI G + G+ EA+ +F M K PNE TL + L+AC+++ AL
Sbjct: 194 MPEKDVVSWTTMISGCLQVGYFMEALDIFHNM-LAKGMSPNEYTLASSLAACANLVALDQ 252
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--LAYKDMISWSTVISG 118
G+++H YI + ++ ++ + +I+MY KCG++ A ++FN + + W+ +I G
Sbjct: 253 GRWMHVYIK-KNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGG 311
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A++G ++A+++F M I V P+ VTF+AL++ACSHG V++G F++M++ Y + P
Sbjct: 312 FAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKP 371
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+ GRAG L+EAE I M + + ++WGALL+AC+IH++ EM + + + +
Sbjct: 372 ELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIV 431
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+G L++N ++ W +A +R++I G KK GCS IE+N
Sbjct: 432 KELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELN 482
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 128/298 (42%), Gaps = 36/298 (12%)
Query: 2 PKRDVVSWTTMIGGYA-ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+ D+ + T+I A ++ + F+ + + + PN+ + C S +
Sbjct: 61 PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLE 120
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYV------------------------------- 89
G+ V + + + L + V NA+I MYV
Sbjct: 121 GEQVRVH-AIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYA 179
Query: 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ G + A Q+F+ + KD++SW+T+ISG G +AL +F M+ G+ P++ T +
Sbjct: 180 RLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLAS 239
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP-I 208
++AC++ +DQG + + I + A ++DMY + G LE A P +
Sbjct: 240 SLAACANLVALDQGRWMHVYIKK-NNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRL 298
Query: 209 EAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDA 265
+ + W A++ +H ++ E + Q + K + TF + N + +R E+
Sbjct: 299 KRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEG 356
>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
Length = 753
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 178/288 (61%), Gaps = 1/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +++W ++I G EEA + +EM EPN T+ +VL C+ ++ L
Sbjct: 353 MEAKSLITWNSIISGCCHMDRSEEASFLLREM-LLFGIEPNYVTIASVLPLCARVANLQH 411
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H Y++ R D L+ NA+++MY + G V A +VF+ML +D ++++++I+G
Sbjct: 412 GKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYG 471
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G+ AL+LF M + PD +T IA++SACSH GLV QG +LF+ M ++Y + P
Sbjct: 472 MQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHL 531
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+AC+ D++GRAGLL +A+ IR MP + ++W L+ ACRIHRN E+ + ++L+
Sbjct: 532 EHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLE 591
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
K + G + L++N +A A W K+R +R +G++K GC+W++V
Sbjct: 592 MKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 639
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 2/195 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W T+ GGY G + A+ + +M K + + L+ L ACS I G+ +
Sbjct: 256 NIIIWNTIAGGYLRTGNYKGALELLSQMRKCG-SHLDSVALIIGLGACSHIGDAKLGKEI 314
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS+ + R + V NA+I MY +C D+ A +F ++ K +I+W+++ISG
Sbjct: 315 HSF-AIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDR 373
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+A L M++ G+ P+ VT +++ C+ + G M+ + +
Sbjct: 374 SEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWN 433
Query: 185 CVVDMYGRAGLLEEA 199
+VDMY R+G + EA
Sbjct: 434 ALVDMYARSGKVLEA 448
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 107/237 (45%), Gaps = 25/237 (10%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I Y GFC++A+S +++M K K P+ T +VL AC L FG+ VH I
Sbjct: 169 WNLLISSYVRNGFCQKALSAYKQMVK-KGIRPDNFTYPSVLKACGEELDLGFGKEVHESI 227
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD----MISWSTVISGLAMNGC 124
+ ++Y G A ++F + +D +I W+T+ G G
Sbjct: 228 NA---------------SLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGN 272
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK-AMSTVYEIVPQTQHY 183
+ AL+L S M G D V I + ACSH G G + A+ + + V ++
Sbjct: 273 YKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKN- 331
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELV 239
++ MY R L+ A + M ++ W ++++ C + R++E +R+ L+
Sbjct: 332 -ALITMYSRCKDLKHAYLLFQLMEAKS-LITWNSIISGCCHMDRSEEASFLLREMLL 386
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 47 NVLSACSSISALSFGQYVHSYIST----RYDLSVSNLVG-NAVINMYVKCGDVGIAIQVF 101
++LS+C+ + +L+ G+ +H +I + ++ + V LV + N+ V D + +
Sbjct: 105 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLV---DAHVITENS 161
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
N+L W+ +IS NG ++AL + M+ G+ PD+ T+ +++ AC
Sbjct: 162 NIL---HPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKAC 211
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 172/290 (59%), Gaps = 1/290 (0%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++DVVSW T+I GYA +G + A+ VF EM + P+EAT+V++LS C++ L G
Sbjct: 224 PEKDVVSWNTIITGYAAQGMLKHALEVFDEM-RAAGWTPDEATIVSLLSCCANTGLLDAG 282
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +H + +S +VGNA+++MY KCGD+ A++ FN + D+ +W++VI GLA
Sbjct: 283 RMIHHQLHLERRPWISIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAF 342
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G Q+++ F M+ + P++++F+ ++ ACSH GLV+ G F M Y I P +
Sbjct: 343 HGQAEQSVRFFKKMLEKRIHPNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNAR 402
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY+C+VDM GRAGLL+EA A + M E VW LL ACR H N + +R++L+N
Sbjct: 403 HYSCIVDMLGRAGLLDEAYAIVSNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNM 462
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ + L+S +A + W R + R G++K G + I+ P+
Sbjct: 463 NEDASADYVLLSGIYASSGEWLGVETERRSMDRRGIRKAAGYAQIDRKPA 512
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 66/304 (21%), Positives = 119/304 (39%), Gaps = 64/304 (21%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D+ M+ GYA G +A +V++ M + P+ T +L AC+ +
Sbjct: 59 IPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRA 118
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI---------------------- 98
G+ VH + + V NA+INM+ KCGD+ +A
Sbjct: 119 GRQVHGAV-VKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHA 177
Query: 99 ---------QVFNMLAYKDM-------------------------------ISWSTVISG 118
++F+ +KD+ +SW+T+I+G
Sbjct: 178 ARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITG 237
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + AL++F M G PD+ T ++L+S C++ GL+D G ++ +
Sbjct: 238 YAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWI 297
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+V MY + G L A M W+ W +++ H E +++
Sbjct: 298 SIVVGNALVSMYAKCGDLHTAVEGFNTMKDTDVWT-WNSVIGGLAFHGQAEQSVRFFKKM 356
Query: 239 VNKK 242
+ K+
Sbjct: 357 LEKR 360
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M DV +W ++IGG A G E++V F++M + K PNE + + VL ACS +
Sbjct: 325 MKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLE-KRIHPNEISFLCVLGACSHAGLVED 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--DVGIAIQVFNMLAYKDMISWSTVISG 118
GQ + RY + + + +++M + G D AI V NM + W T++
Sbjct: 384 GQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAI-VSNMRCEPSAVVWRTLLGA 442
Query: 119 LAMNG 123
+G
Sbjct: 443 CRTHG 447
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+++SWT +I GYA +A+++F+ M+ + P+E TL+ VLSAC+ + AL
Sbjct: 203 MPQRNLISWTALISGYAHINRPHQAIAIFRTMQ-LQNVVPDEITLLAVLSACAQLGALEL 261
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + L + + NA+I+MY K G++ A+ +F + +K +++W+T+I+GLA
Sbjct: 262 GEWIRNYIDI-HGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLA 320
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G QAL++FS M + V P+++TFIA++SACSH GLV F M + Y I P+
Sbjct: 321 LHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKI 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ GRAG L+EA+ +++MP E ++WG+LL A H + + + + L+
Sbjct: 381 EHYGCMIDLLGRAGYLQEAQQLLQQMPFEPNAAIWGSLLAASYTHGDAMLGERTLKHLIE 440
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G +AL+SN +A RW+ + +R +R G+KK G S+IEVN
Sbjct: 441 LEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVN 489
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
NA++ Y K D+ A +F+ + +++ISW+ +ISG A QA+ +F M + V
Sbjct: 181 NAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVV 240
Query: 142 PDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
PD++T +A++SAC+ G ++ G + + + ++ VP + ++DMY ++G ++ A
Sbjct: 241 PDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPL---HNALIDMYAKSGNIKRA 297
Query: 200 EAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
M W ++ +H + EMF + ++ V ++
Sbjct: 298 LLIFESMK-HKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEIT 346
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 179/293 (61%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DVV+W M+GGYA G EA+ +F M+ + P+ T+ LSAC+ + AL
Sbjct: 238 MKNKDVVAWGAMVGGYASNGHPREALELFFAMQ-VEGMRPDCYTVAGALSACTRLGALDL 296
Query: 61 GQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ V + ++D + N ++G A+I+MY KCG G A VF + +D+I W+ +I GL
Sbjct: 297 GRRVVGML--QWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIVWNAMILGL 354
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M G + A L M +G+ +D TFI L+ +C+H GLV G F+ M+ +Y I P+
Sbjct: 355 GMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMTQLYHIRPR 414
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY +VD+ RAGLL+EA I++MP+EA VWGALL C+IHRN ++ + + ++L+
Sbjct: 415 IEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLAEHVLKQLI 474
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN ++ + RWEDA K+R E++ G++K SW+E++ +
Sbjct: 475 QLEPWNSGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWVELDGKV 527
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 4/214 (1%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
VSWT +I Y + G EA+ V + + P+ T V VL+AC+ ++ L G+ V
Sbjct: 142 TVSWTALITAYMDAGRGLEAIGVARSAFASG-VRPDSFTAVRVLTACARVADLVTGEEVW 200
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+ + + ++ + V A +++YVKCG++ A VF+ + KD+++W ++ G A NG
Sbjct: 201 T-AAEKEGIAGNVFVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHP 259
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
R+AL+LF M + G+ PD T +SAC+ G +D G + M E++
Sbjct: 260 REALELFFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVV-GMLQWDEVLGNPVLGTA 318
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G EA ++M + VW A++
Sbjct: 319 LIDMYAKCGSTGEAWMVFQKMR-NRDIIVWNAMI 351
>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 106/285 (37%), Positives = 177/285 (62%), Gaps = 1/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ + +W +M+ GY EEA +F+EM + EPN T+ ++L C+ ++ L G+
Sbjct: 343 KSLTTWNSMLSGYTHMDRSEEASFLFREMLFSG-IEPNYVTIASILPHCARVANLQQGKE 401
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H YI R L+ N+++ MY + G V A +VF+ L +D ++++++I+G + G
Sbjct: 402 FHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQG 461
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G+ AL+LF MI + + PD VT +A++SACSH GLV +G +LF+ MST+Y IVP +H+
Sbjct: 462 EGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHF 521
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
+C+VD++GRAGLL +A+ I MP ++W L+ ACRIH N E+ + ++L+ K
Sbjct: 522 SCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKP 581
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L++N A A RW ++R +R +G++K GC+W++V
Sbjct: 582 ENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAPGCTWVDV 626
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 115/260 (44%), Gaps = 41/260 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ W +I Y G EA+S ++EM K P+ T +VL AC L FG+ VH
Sbjct: 108 LPWNLLISSYVNNGLHGEALSAYREMVH-KGVRPDNFTYPSVLKACGEKLDLDFGREVHE 166
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I+ Y + V N++++MY K G++ A ++FN + +D +SW+ +IS A G +
Sbjct: 167 SINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWK 226
Query: 127 QALQLFSLMIING-----------------------------------VFPDDVTFIALI 151
+A +LF M + G + D V I +
Sbjct: 227 EAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGL 286
Query: 152 SACSHGGLVDQGLILF-KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
ACSH G + G ++ A+ + ++ ++ ++ MY R L A+ + + ++
Sbjct: 287 GACSHIGAIKLGTVIHASAIRSCFDGFDNVRN--ALITMYSRCKDLRHADILFKSIKTKS 344
Query: 211 EWSVWGALLNA-CRIHRNDE 229
+ W ++L+ + R++E
Sbjct: 345 -LTTWNSMLSGYTHMDRSEE 363
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 49/235 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEAT---------------- 44
MP+RD VSW +I YA RG +EA +F+EM + AE N T
Sbjct: 204 MPERDAVSWNGIISNYASRGLWKEAFELFEEM-RLAGAEVNIITWNTIAGGCVQTRNFKG 262
Query: 45 -------------------LVNVLSACSSISALSFGQYVH-SYISTRYDLSVSNLVGNAV 84
++ L ACS I A+ G +H S I + +D N V NA+
Sbjct: 263 ALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFD-GFDN-VRNAL 320
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
I MY +C D+ A +F + K + +W++++SG +A LF M+ +G+ P+
Sbjct: 321 ITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNY 380
Query: 145 VTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
VT +++ C+ + QG I+ + Y ++ + +V+MY R+G
Sbjct: 381 VTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLL-----WNSLVEMYARSG 430
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +RD V++T++I GY +G + A+ +F EM K + +P++ T+V VLSACS ++
Sbjct: 442 LRRRDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHR-IKPDQVTMVAVLSACSHSGLVTE 500
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + +ST Y + + + +++++ + G + A +V + Y+ + W+T++
Sbjct: 501 GNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGAC 560
Query: 120 AMNG 123
++G
Sbjct: 561 RIHG 564
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 98/212 (46%), Gaps = 15/212 (7%)
Query: 17 AERGFCEEAVSVFQEMEKTKEAEPNEATLVNV---LSACSSISALSFGQYVHSY-ISTRY 72
A +G +A F ++ + +A L ++ L +C+++ +L G+ +H++ IS +
Sbjct: 13 ARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQLHAHTISLGF 72
Query: 73 D---LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ + V LV + ++ + + + N L W+ +IS NG +A
Sbjct: 73 ENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLP------WNLLISSYVNNGLHGEA 126
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L + M+ GV PD+ T+ +++ AC +D G + ++++ Y + +V
Sbjct: 127 LSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVS 186
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
MYG+ G L+ A +MP E + W +++
Sbjct: 187 MYGKFGELDAARRLFNQMP-ERDAVSWNGIIS 217
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 223 bits (567), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 179/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + V WT +I GY ++G E+ + +F EM + K + AT ++L AC+++++L+
Sbjct: 402 LAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIG-ADSATYASILRACANLASLTL 460
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS I LS + G+A+++MY KCG + A+Q+F + ++ +SW+ +IS A
Sbjct: 461 GKQLHSRIIRSGCLS-NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYA 519
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G AL+ F MI +G+ P+ V+F++++ ACSH GLV++GL F +M+ VY++ P+
Sbjct: 520 QNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRR 579
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYA +VDM R+G +EAE + MP E + +W ++LN+CRIH+N E+ +L N
Sbjct: 580 EHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFN 639
Query: 241 KKGV-SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
KG+ + MSN +A A W+ K++ +R G++K SW+E+
Sbjct: 640 MKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEI 688
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 16/227 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D +S+ +I A G EE++ +F+E++ T+ + + +LS ++ L
Sbjct: 301 MPEVDGISYNVLITCCAWNGRVEESLELFRELQFTR-FDRRQFPFATLLSIAANSLNLEM 359
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HS + D LVGN++++MY KC G A ++F LA++ + W+ +ISG
Sbjct: 360 GRQIHSQ-AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYV 418
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH------GGLVDQGLILFKAMSTVY 174
G L+LF M + D T+ +++ AC++ G + +I +S V+
Sbjct: 419 QKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVF 478
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +VDMY + G ++EA +EMP+ S W AL++A
Sbjct: 479 S-------GSALVDMYAKCGSIKEALQMFQEMPVRNSVS-WNALISA 517
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 22/260 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VV+WT +IGGYA+ EA ++F +M + P+ TL +LS + +++
Sbjct: 99 MVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV-PDHITLATLLSGFTEFESVNE 157
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
VH ++ YD ++ +V N++++ Y K +G+A +F +A KD ++++ +++G
Sbjct: 158 VAQVHGHVVKVGYDSTL--MVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGY 215
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ G A+ LF M G P + TF A+++A ++ G V+ V +
Sbjct: 216 SKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFG-------QQVHSFVVK 268
Query: 180 TQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDE 229
++D Y + + EA EMP E + + L+ C R+ + E
Sbjct: 269 CNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLITCCAWNGRVEESLE 327
Query: 230 MFDPIRQELVNKKGVSVGTF 249
+F ++ +++ T
Sbjct: 328 LFRELQFTRFDRRQFPFATL 347
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +I Y+K G++ A +F+ + + +++W+ +I G A + +A LF+ M +G+
Sbjct: 77 NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136
Query: 142 PDDVTFIALIS 152
PD +T L+S
Sbjct: 137 PDHITLATLLS 147
>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 179/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ VSW +I GYA +G ++A +F M + + +P T +VL AC+S+ +L
Sbjct: 179 MVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLR-ENVKPTHFTYSSVLCACASMGSLEQ 237
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH+ + ++ + VGN +++MY K G + A +VF+ LA +D++SW+++++G +
Sbjct: 238 GKWVHA-LMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYS 296
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G+ ALQ F M+ + P+D+TF+ +++ACSH GL+D+G F M Y + PQ
Sbjct: 297 QHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQI 355
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY +VD+ GRAG L+ A FI EMPI+ +VWGALL ACR+H+N E+ + +
Sbjct: 356 SHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFE 415
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT L+ N +A A RW DA K+R ++ G+KK+ CSW+E+ +
Sbjct: 416 LDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEV 467
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 113/206 (54%), Gaps = 13/206 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+WT +I GY++ ++A+ + EM + +PN+ TL ++L A S + +
Sbjct: 76 MSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIG-LKPNQFTLASLLKAASGVGSTDV 134
Query: 61 --GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H + RY + V A+++MY +C + A +F+++ K+ +SW+ +I+G
Sbjct: 135 LQGRQLHG-LCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAG 193
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVY 174
A G G +A LFS M+ V P T+ +++ AC+ G ++QG ++ K +
Sbjct: 194 YARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLV 253
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAE 200
V T ++DMY ++G +E+A+
Sbjct: 254 AFVGNT-----LLDMYAKSGSIEDAK 274
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 48 VLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
+L C+ ++ L+ G+ +H+ + ++R+ + ++ N ++N+Y KCGD+ A ++F+ ++
Sbjct: 21 LLKRCTHLNKLNEGKIIHALLLNSRFRDDL--VMQNTLLNLYAKCGDLVYARKLFDEMSS 78
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGL 164
+D+++W+ +I+G + + + AL L M+ G+ P+ T +L+ A S G D QG
Sbjct: 79 RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
L + Y ++DMY R LEEA+ M + E S W AL+
Sbjct: 139 QL-HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS-WNALI 191
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 179/293 (61%), Gaps = 10/293 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDV++W +I GYA+ G +EA+S+F M++ E N+ TL VLSAC++I AL
Sbjct: 279 MAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTE-NKITLTAVLSACATIGALDL 337
Query: 61 GQYVHSYISTR---YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ + Y S R +D+ V A+I+MY KCG + A +VF + K+ SW+ +IS
Sbjct: 338 GKQIDEYASQRGFQHDI----FVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMIS 393
Query: 118 GLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
LA +G ++AL LF M G P+D+TF+ L+SAC H GLV++G LF MST++
Sbjct: 394 ALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFG 453
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+VP+ +HY+C+VD+ RAG L EA I +MP + + GALL ACR +N ++ + +
Sbjct: 454 LVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVI 513
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ ++ + G + + S +A + WED+ ++R +R+ G+ K GCSWIEV
Sbjct: 514 RMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEV 566
Score = 157 bits (398), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 15/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD+VSW +MI GYA+ G EAV VF EM + EP+E +LV+VL AC + L
Sbjct: 177 IPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLEL 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++V ++ R +++++ +G+A+I+MY KCGD+G A ++F+ +A +D+I+W+ VISG A
Sbjct: 237 GRWVEGFVVER-GMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYA 295
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A+ LF M + V + +T A++SAC+ G +D G + E Q
Sbjct: 296 QNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLG-------KQIDEYASQR 348
Query: 181 --QH----YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
QH ++DMY + G L A+ +EMP + E S W A+++A H
Sbjct: 349 GFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEAS-WNAMISALASH 398
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A+++F M + N LS C++++ LS + HS + + L +++
Sbjct: 100 ALTLFHRMMSLSLSPNNFTFPFFFLS-CANLAVLSPARAAHSLV-FKLALHSDPHTTHSL 157
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IINGVFPD 143
I MY +CG V A +VF+ + +D++SW+++I+G A GC R+A+++F M +G PD
Sbjct: 158 ITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPD 217
Query: 144 DVTFIALISACSHGGLVDQG 163
+++ ++++ AC G ++ G
Sbjct: 218 EMSLVSVLGACGELGDLELG 237
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 184/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R ++SWT MI G+ ++GF EEA+ F+EM+ + EP+ ++ VL+AC+++ ALSF
Sbjct: 162 MPERGLISWTAMINGFVKKGFHEEALVWFREMQSSG-VEPDYVAIIAVLAACTNLGALSF 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ +R D + V N+ I+++ +CG V +A VF+ + + ++SW++VI +
Sbjct: 221 GLWVHRYLVSR-DFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFS 279
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G P+ VTF ++ACSH GLV++GL F+ M Y I P+
Sbjct: 280 ANGHADESLVYFRRMQEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRI 339
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL ACR H N+ + + + + L
Sbjct: 340 EHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLLAACRTHGNNTVLAERLMKHLS 399
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 400 DTNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 449
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA--LSFGQY 63
+SWT+ I + G EA F +M + EPN T + +LS C S+ SFG
Sbjct: 32 TISWTSRITLLSRNGRLAEAAKEFSDM-RFAGVEPNHITFIALLSGCGDFSSGSESFGDL 90
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNML------------------ 104
+H Y + + L ++ +VG A+I MY K G V A VF+ +
Sbjct: 91 LHGY-ACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRK 149
Query: 105 -----AYK--------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
AYK +ISW+ +I+G G +AL F M +GV PD V IA++
Sbjct: 150 GKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVL 209
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + + + + + +D++ R G +E A+ M
Sbjct: 210 AACTNLGALSFGLWVHRYLVS-RDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHM 263
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 185/298 (62%), Gaps = 12/298 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA----------EPNEATLVNVLS 50
M RD+V+W TMI GY E+A+ + +M+ + +PN TL+ +L
Sbjct: 379 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 438
Query: 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
+C+++SAL+ G+ +H+Y + + +L+ VG+A+++MY KCG + ++ +VF+ + K++I
Sbjct: 439 SCAALSALAKGKEIHAY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 497
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+W+ +I M+G G++A+ L +M++ GV P++VTFI++ +ACSH G+VD+GL +F M
Sbjct: 498 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 557
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDE 229
Y + P + HYACVVD+ GRAG ++EA + MP + + W +LL A RIH N E
Sbjct: 558 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 617
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + Q L+ + + L++N ++ A W+ A ++R ++ G++K+ GCSWIE
Sbjct: 618 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 118/251 (47%), Gaps = 15/251 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + W MI GY++ +EA+ +F ME++ N T+ V+ AC A S
Sbjct: 277 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 336
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++ R L V N +++MY + G + IA+++F + +D+++W+T+I+G
Sbjct: 337 KEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 395
Query: 121 MNGCGRQALQLFSLM------IING-----VFPDDVTFIALISACSHGGLVDQGLILFKA 169
+ AL L M + G + P+ +T + ++ +C+ + +G + A
Sbjct: 396 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-HA 454
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-D 228
+ + + +VDMY + G L+ + ++P + W ++ A +H N
Sbjct: 455 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 513
Query: 229 EMFDPIRQELV 239
E D +R +V
Sbjct: 514 EAIDLLRMMMV 524
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI---SA 57
+ +R+ VSW ++I E A+ F+ M + EP+ TLV+V++ACS++
Sbjct: 72 ISERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEG 130
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L G+ VH+Y + +L+ + + N ++ MY K G + + + +D+++W+TV+S
Sbjct: 131 LMMGKQVHAYGLRKGELN--SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 188
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
L N +AL+ M++ GV PD+ T +++ ACSH ++ G
Sbjct: 189 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 234
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T++ + EA+ +EM + EP+E T+ +VL ACS + L G+
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKE 236
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y L ++ VG+A+++MY C V +VF+ + + + W+ +I+G + N
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIV 177
++AL LF M + G+ + T ++ AC G + G ++ + + V
Sbjct: 297 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFV 355
Query: 178 PQTQHYACVVDMYGRAGLLEEA 199
T ++DMY R G ++ A
Sbjct: 356 QNT-----LMDMYSRLGKIDIA 372
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 89/168 (52%), Gaps = 5/168 (2%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 97
+P+ +L A + + + G+ +H+++ ++ V ++ V N ++N+Y KCGD G
Sbjct: 7 KPDNYAFPALLKAVADLQDMELGKQIHAHV-YKFGYGVDSVTVANTLVNLYRKCGDFGAV 65
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+VF+ ++ ++ +SW+++IS L AL+ F M+ V P T +++++ACS+
Sbjct: 66 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFI 203
+ +GL++ K + + + +V MYG+ G L ++ +
Sbjct: 126 PM-PEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLL 172
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 172/289 (59%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVS+ +MI GY + + EA+ +F +MEK P+E TLV VLSA + + LS
Sbjct: 313 MPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 372
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H YI + + +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 373 AMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLA 431
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A + + + PDD+TF+ L++ACSH GLV +GL+ F+ M ++I P+
Sbjct: 432 IHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRL 491
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ R+G +E A+ I EMPIE +W L AC H+ E + + + L+
Sbjct: 492 QHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIW 551
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + ++ L+SN +A +W+D +IR ++ ++K GCSWIE++
Sbjct: 552 EAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELD 600
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALS 59
MP+RD VS+ +MI GY + G E A +F M P E L++ S S + S
Sbjct: 186 MPQRDSVSYNSMIDGYVKCGSTESARELFDLM-------PEEMKNLISWNSMISGYAQTS 238
Query: 60 FGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G + S + + ++ +L+ N++I+ YVK G + A +F+++ +D+++WST+I G
Sbjct: 239 DGVDIASKLFS--EMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDG 296
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G QA LF M D V++ ++I+ + L +F M + P
Sbjct: 297 YAKLGFVHQAKTLFDQM----PHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSP 352
Query: 179 QTQHYACVVDMYGRAGLLEEA 199
V+ + G L +A
Sbjct: 353 DETTLVIVLSAIAQLGRLSKA 373
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 106/234 (45%), Gaps = 39/234 (16%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D W +I ++ A+ +F M + ++ +L VL ACS + + G +
Sbjct: 89 DXYLWNAVIKSHSHGTDPRRALLLFCLMLENG-VSVDKFSLSLVLKACSRLGLVKEGMQI 147
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ + L + N +I +Y+KCG +G A Q+F+ + +D +S++++I G G
Sbjct: 148 HGFLK-KTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGS 206
Query: 125 GRQALQLFSLMIINGVFPDD----VTFIALISACSHGG------------LVDQGLILFK 168
A +LF LM P++ +++ ++IS + + D+ LI +
Sbjct: 207 TESARELFDLM------PEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWN 260
Query: 169 AM-------------STVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMP 207
+M +++++P+ ++ ++D Y + G + +A+ +MP
Sbjct: 261 SMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMP 314
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+D W+ VI + R+AL LF LM+ NGV D + ++ ACS GLV +G+ +
Sbjct: 88 EDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEGMQI 147
Query: 167 ---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
K ++ Q C++ +Y + G L A MP
Sbjct: 148 HGFLKKTGLWSDLFLQN----CLIGLYLKCGWLGFARQIFDRMP 187
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 178/284 (62%), Gaps = 2/284 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ W MI G+ E EEA+S+F EM+ + + ++ T+ ++L AC+ + AL G+++
Sbjct: 172 NLFCWNIMINGHVEDSDYEEALSLFNEMQLSG-VKGDKVTMASLLIACTHLGALELGKWL 230
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H YI + + V +G A+++MY KCG + A++VF + KD+++W+ +I GLAM G
Sbjct: 231 HVYIE-KEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 289
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G +AL+LF M ++ V PD +TF+ +++ACSH GLV++G+ F +M Y I P +HY
Sbjct: 290 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 349
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VDM GRAG + EAE I+ MP+ ++ V LL+ACRIH N + + Q+L+
Sbjct: 350 CMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPK 409
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ GT+ L+SN ++ WE A K+R+ + +KK GCS IEV
Sbjct: 410 NGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 453
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 39/251 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + ++I GY + +A+ +Q M + +P+ T ++ +C L
Sbjct: 38 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLM-MLQGLDPDRFTFPSLFKSCG---VLCE 93
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + ST+ + + N ++NMY CG + A +VF+ + K ++SW+T+I A
Sbjct: 94 GKQLHCH-STKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYA 152
Query: 121 ---------------------------MNGC-----GRQALQLFSLMIINGVFPDDVTFI 148
+NG +AL LF+ M ++GV D VT
Sbjct: 153 QWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMA 212
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+L+ AC+H G ++ G L + +I +VDMY + G +E A +EMP
Sbjct: 213 SLLIACTHLGALELGKWLHVYIEK-EKIEVDVALGTALVDMYAKCGSIESAMRVFQEMP- 270
Query: 209 EAEWSVWGALL 219
E + W AL+
Sbjct: 271 EKDVMTWTALI 281
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DV++WT +I G A G +A+ +F EM+ + E +P+ T V VL+ACS ++
Sbjct: 269 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMS-EVKPDAITFVGVLAACSHAGLVNE 327
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + + +Y + S +++M + G + A + NM D ++S
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387
Query: 120 AMNG----CGRQALQLFSLMIING 139
++G R A QL L NG
Sbjct: 388 RIHGNLVVAERAAQQLIELDPKNG 411
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G + A VFN + + +++I G RQA+ + LM++ G+ PD TF +L
Sbjct: 26 GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+C G++ +G L ST +++MY G L A +M +
Sbjct: 86 KSC---GVLCEGKQL-HCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKM-VNKS 140
Query: 212 WSVWGALLNA 221
W ++ A
Sbjct: 141 VVSWATMIGA 150
>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
Length = 941
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 176/290 (60%), Gaps = 2/290 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+D+VSWT+MI G AV +F EM+K +P+ LV++L A + +S+L+ G+
Sbjct: 530 KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKAN-IQPDSVALVSILVAIAGLSSLTKGK 588
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH ++ R + + V +++++MY CG + AI+VF KD++ W+ +I+ M+
Sbjct: 589 QVHGFL-IRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMH 647
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G+QA+ LF M+ G+ PD V+F+AL+ ACSH LV++G M + Y + P +H
Sbjct: 648 GHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEH 707
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YACVVD+ GR+G EEA FI+ MP++ + +VW ALL ACR+HRN + +L+ +
Sbjct: 708 YACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELE 767
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN FA +W +A + R + GL+K CSWIE+ +I
Sbjct: 768 PDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNI 817
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 8/224 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE--AEPNEATLVNVLSACSSISAL 58
MP R V SW ++G Y G EA+ V+ M + + P+ TL +VL AC +
Sbjct: 121 MPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDG 180
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVI 116
G VH ++ + L S LV NA+I MY KCG + A++VF L +D+ SW++V+
Sbjct: 181 RCGGEVHG-LAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVV 239
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
SG NG +AL LF M G + T +A++ C+ GL+ G L A+
Sbjct: 240 SGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE 299
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ Q A +V MY + G ++ A ++ E ++ W ++L+
Sbjct: 300 L-NIQCNALLV-MYAKYGRVDSALRVFGQIA-EKDYISWNSMLS 340
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 125/252 (49%), Gaps = 10/252 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV SW +++ G + G EA+++F+ M+ + N T V VL C+ + LS G+
Sbjct: 230 RDVASWNSVVSGCVQNGRTLEALALFRGMQ-SAGFPMNSYTSVAVLQVCAELGLLSLGRE 288
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + S N+ NA++ MY K G V A++VF +A KD ISW++++S N
Sbjct: 289 LHAALLKCG--SELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNS 346
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A+ F M+ +G PD ++L SA H ++ G F A + + Q
Sbjct: 347 FYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGR-EFHAYAIKQRLHTDLQVG 405
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC--RIHRNDEMFDPIRQELVNK 241
++DMY + G +E + M I S W +L AC + R+ E + I + + K
Sbjct: 406 NTLMDMYIKCGSIECSAKVFESMGIRDHIS-WTTIL-ACFAQSSRHSEALEMILE--LQK 461
Query: 242 KGVSVGTFALMS 253
+G+ V + + S
Sbjct: 462 EGIMVDSMMIGS 473
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 117/226 (51%), Gaps = 13/226 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D +SW +M+ Y + F EA+ F EM + +P+ A +V++ SA +S L+
Sbjct: 327 IAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQ-HGFQPDHACVVSLSSALGHLSRLNN 385
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+Y + + L VGN +++MY+KCG + + +VF + +D ISW+T+++ A
Sbjct: 386 GREFHAY-AIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFA 444
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI----LFKAMSTVYEI 176
+ +AL++ + G+ D + +++ C GL L+ + + + ++
Sbjct: 445 QSSRHSEALEMILELQKEGIMVDSMMIGSILETCC--GLKSISLLKQVHCYAIRNGLLDL 502
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ + + ++D+YG G + + + + + + W +++N C
Sbjct: 503 ILENR----LIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCC 543
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 115/231 (49%), Gaps = 17/231 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD +SWTT++ +A+ EA+ + E++K + + + ++L C + ++S
Sbjct: 428 MGIRDHISWTTILACFAQSSRHSEALEMILELQK-EGIMVDSMMIGSILETCCGLKSISL 486
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH Y + R L + ++ N +I++Y +CG+ ++ +F + KD++SW+++I+
Sbjct: 487 LKQVHCY-AIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCT 544
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIAL------ISACSHGGLVDQGLILFKAMSTVY 174
NG A+ LF+ M + PD V +++ +S+ + G V G ++ +
Sbjct: 545 NNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV-HGFLIRRNFPIEG 603
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+V + +VDMY G + A + + +W A++NA +H
Sbjct: 604 PVV------SSLVDMYSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMH 647
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 7/194 (3%)
Query: 35 TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCG 92
T A P VL ++ A + G+ VH++ T L+ + + ++ MY +CG
Sbjct: 50 TTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCG 109
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPDDVTFIA 149
V A ++FN + + + SW+ ++ +G +A++++ M + G PD T +
Sbjct: 110 RVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLAS 169
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC G G + ++ + T ++ MY + GLL+ A + +
Sbjct: 170 VLKACGAEGDGRCGGEV-HGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQD 228
Query: 210 A-EWSVWGALLNAC 222
A + + W ++++ C
Sbjct: 229 ARDVASWNSVVSGC 242
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 176/291 (60%), Gaps = 13/291 (4%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE---------PNEATLVNVLSACSSISA 57
VS M E GF + +F E + +AE PN+ T+V+ L AC+ I A
Sbjct: 177 VSLVDMYVKIGELGF---GLQLFDESPQRNKAESILLWNGVRPNDLTVVSALLACTKIGA 233
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L G+ +H+Y+S+ ++ +G A+++MY KCG++ A +VF KD+++WS +I
Sbjct: 234 LQVGERIHNYLSSN-GFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIW 292
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G A++GC QALQ F M G+ PD+V F+A+++ACSH G VDQGL F++M Y I
Sbjct: 293 GWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIE 352
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
P +HY +VD+ GRAG L+EA +FI+ MPI ++ +WGAL ACR H+N EM + ++
Sbjct: 353 PTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEK 412
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
L+ + G++ +SN +A RWED ++R ++ G++K G S+IEV
Sbjct: 413 LLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEV 463
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ +I G AE E +VS F M + P+ TL VL + +++ + G+ +H +
Sbjct: 106 FNALIRGLAENSRFEGSVSHFVLMLRL-SIRPDRLTLPFVLKSVAALVDVGLGRCLHGGV 164
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ L + V ++++MYVK G++G +Q+F+ ++
Sbjct: 165 -MKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAE----------------- 206
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
S+++ NGV P+D+T ++ + AC+ G + G + +S+ + + A +VD
Sbjct: 207 ----SILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTA-LVD 261
Query: 189 MYGRAGLLEEAEAFIREMPIE--AEWSV--WGALLNAC 222
MY + G ++ A E + WSV WG ++ C
Sbjct: 262 MYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC 299
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D+++W+ MI G+A G ++A+ F +M K+ P+E + +L+ACS + Q
Sbjct: 282 KDLLTWSVMIWGWAIHGCFDQALQCFVKM-KSAGINPDEVIFLAILTACSHSGNVD--QG 338
Query: 64 VHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVI 116
++ + S R D S+ + + ++++ + G + A+ + +M D + W +
Sbjct: 339 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 394
>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 185/291 (63%), Gaps = 2/291 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +VV+WT++I G +G + ++ F+ M+ +K N T+ +LS C+ + AL+ G+
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSK-VLSNSVTICCILSICAELPALNLGR 454
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H ++ R +S + LV NA++NMY KCG + VF + KD+ISW+++I G M+
Sbjct: 455 EIHGHV-IRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMH 513
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL +F MI +G PD + +A++SACSH GLV++G +F +MS + + PQ +H
Sbjct: 514 GFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQEH 573
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GR G L+EA ++ MP+E + V GALLN+CR+H+N ++ + I +L +
Sbjct: 574 YACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNMDIAEIIASQLRVLE 633
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN ++ RWE++ K+R ++ LKK +G SWIE+ I+
Sbjct: 634 PERTGSYMLLSNIYSAGGRWEESAKVRALAKKKDLKKVSGSSWIELKKKIY 684
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 43/210 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL----------- 49
MP R+ +SW MI G+++ CE AV +F+ M++ ++ +P+E T ++L
Sbjct: 219 MPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQR-EDFKPDEVTWTSLLSCHSQCGKFED 277
Query: 50 ------------------------SACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAV 84
S C+ + ALS VH + I ++ + + NA+
Sbjct: 278 VIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPS--RNAL 335
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM----IINGV 140
I++Y K G V A Q+F + K + SW+++I+ G +AL LF+ + + V
Sbjct: 336 IHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVCNV 395
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ VT+ ++I C+ G D L F+ M
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDYSLEYFRRM 425
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W +++ G E A +++ M + + + L +L AC + +
Sbjct: 122 DLRLWNSILKANVSHGLYENAFELYRGM-RERGLTGDGFILPLILRACRYLGRFGLCRAF 180
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + + L + V N ++ +Y K +G A +F + ++ +SW+ +I G +
Sbjct: 181 HSQV-IQIGLKENLHVANELLTLYPKAARIGDAYNLFVEMPVRNRMSWNVMIKGFSQEFD 239
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
A+++F M PD+VT+ +L+S S G + + F M
Sbjct: 240 CESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCGKFEDVIKYFHVM 285
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 177/288 (61%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ W MI GYA+ GF ++A+ +F EM K+ P+ ++ + +SAC+ + +L
Sbjct: 283 MKSPNLILWNAMISGYAKNGFAKDAIDLFHEM-INKDVRPDTISITSAISACAQVGSLEQ 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+++ Y+S R D + +A+I+M+ KCG V A VF+ +D++ WS +I G
Sbjct: 342 ARWMDEYVS-RSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYG 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+A+ L+ M +GV P+DVTF+ L+ AC+H G+V +G F M+ ++I PQ
Sbjct: 401 LHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMAD-HKINPQQ 459
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC++D+ GRAG L++A I+ MP++ +VWGALL+AC+ HR+ E+ Q+L +
Sbjct: 460 QHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFS 519
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + +SN +A A W+ ++R ++ GL K GCSW+EV
Sbjct: 520 IDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 14/230 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R +VSWT ++ YA+ G EA+ +F +M K + +P+ LV+VL+A + + L
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM-DVKPDCVALVSVLNAFTCLQDLEQ 240
Query: 61 GQYVHSYI-----STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
G+ +H+ + T DL +S + MY KCG V A +F+ + ++I W+ +
Sbjct: 241 GRSIHASVMKMGLETEPDLLIS------LNTMYAKCGQVATAKILFDKMKSPNLILWNAM 294
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
ISG A NG + A+ LF MI V PD ++ + ISAC+ G ++Q + + +S +
Sbjct: 295 ISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS-D 353
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DM+ + G +E A + + + ++ + VW A++ +H
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARS-VFDRTLDRDVVVWSAMIVGYGLH 402
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 130/285 (45%), Gaps = 20/285 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ V W +I GY+ ++A+ ++ +M+ + P+ T ++L AC +S L
Sbjct: 79 LPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLAR-VSPDSFTFPHLLKACGGLSHLQM 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118
G++VH+ + R V N +I +Y KC +G A VF L + ++SW+ ++S
Sbjct: 138 GRFVHAQV-FRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIV 177
A NG +AL++FS M V PD V +++++A + ++QG I M E
Sbjct: 197 YAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR-- 235
P + MY + G + A+ +M +W A+++ +N D I
Sbjct: 257 PDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMISG--YAKNGFAKDAIDLF 311
Query: 236 QELVNKKGVSVGTFALMSNTFAGAD-------RWEDANKIRDEIR 273
E++NK V T ++ S A A RW D R + R
Sbjct: 312 HEMINKD-VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYR 355
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 11/213 (5%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
L S + +I+ GD+ A QVF+ L + W+ +I G + N + AL ++S
Sbjct: 49 LQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYS 108
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYG 191
M + V PD TF L+ AC GGL + F + V+ + + + ++ +Y
Sbjct: 109 KMQLARVSPDSFTFPHLLKAC--GGLSHLQMGRF-VHAQVFRLGFEADVFVQNGLIALYA 165
Query: 192 RAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIHRNDEMFDPIRQ-ELVNKKGVSVGTF 249
+ L A +P+ V W A+++A +N E + + + K V
Sbjct: 166 KCRRLGCARTVFEGLPLPERTIVSWTAIVSA--YAQNGEPVEALEIFSQMRKMDVKPDCV 223
Query: 250 ALMS--NTFAGADRWEDANKIRDEIRRMGLKKK 280
AL+S N F E I + +MGL+ +
Sbjct: 224 ALVSVLNAFTCLQDLEQGRSIHASVMKMGLETE 256
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 180/286 (62%), Gaps = 2/286 (0%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
VSW++M+ GY + G E+A+ F M + E ++ TL +V+SAC+S L G+ VH
Sbjct: 602 VSWSSMVSGYVQNGRFEDALKTFSFM-ICSQVEVDKFTLTSVVSACASAGVLELGRQVHG 660
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
YI + + +G+++I+MYVKCG + A +FN ++++ W+++ISG A++G GR
Sbjct: 661 YIQ-KIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGR 719
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
+A++LF LMI G+ P++V+F+ +++ACSH GL+++G F+ M VY I P +H+ C+
Sbjct: 720 EAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCM 779
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
VD+YGRAG L E + FI I SVW + L++CR+H+N EM + ++L+ +
Sbjct: 780 VDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDA 839
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L S+ A RWE+A KIR +++ G+KK SWI++ +
Sbjct: 840 GPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQV 885
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 37/243 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS-ISALS 59
+P+ DV SWT +I G+A G + + +F +M+ + PN+ TL VL +CSS ++
Sbjct: 347 IPQTDVFSWTVLISGFARIGLSADVLGLFTKMQD-QGVCPNQFTLSIVLKSCSSNVNDSR 405
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKC---------------------------- 91
G+ +H +I R L + ++ N++++ YVKC
Sbjct: 406 IGKGIHGWI-LRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSY 464
Query: 92 ---GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF- 147
GD+ ++ +F L KD SW+T+I GL NGC R AL+L M+ G + +TF
Sbjct: 465 LQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFS 524
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
IAL+ A S L I + + ++ ++DMY + G +E+A + +P
Sbjct: 525 IALVLASSLSVLGLGKQIHTQVLKV--GVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLP 582
Query: 208 IEA 210
E+
Sbjct: 583 QES 585
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 35/248 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP--NEATLVNVLSACSSISAL 58
+P +D SW TMI G G CE + + K A P N+ T L SS+S L
Sbjct: 480 LPGKDAASWNTMIDGLMRNG-CERVA--LELLYKMVAAGPAFNKLTFSIALVLASSLSVL 536
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-------------- 104
G+ +H+ + + + V N++I+MY KCG++ A +F L
Sbjct: 537 GLGKQIHTQV-LKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCD 595
Query: 105 -AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
A + +SWS+++SG NG AL+ FS MI + V D T +++SAC+ G+++ G
Sbjct: 596 DAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELG 655
Query: 164 LILFKAMSTVYEIVPQTQH------YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
V+ + + H + ++DMY + G L +A + + +W +
Sbjct: 656 -------RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAK-DRNVVLWTS 707
Query: 218 LLNACRIH 225
+++ C +H
Sbjct: 708 MISGCALH 715
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140
GN ++N+Y K ++ A ++F + D+ SW+ +ISG A G L LF+ M GV
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383
Query: 141 FPDDVTFIALISACS 155
P+ T ++ +CS
Sbjct: 384 CPNQFTLSIVLKSCS 398
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
R+VV WT+MI G A G EAV +F E+ + PNE + V VL+ACS L G
Sbjct: 700 RNVVLWTSMISGCALHGQGREAVRLF-ELMINEGITPNEVSFVGVLTACSHAGLLEEG 756
>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
Length = 767
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 12/299 (4%)
Query: 4 RDVVSWTTMIGGYAERGFC-EEAVSVFQEMEKTK-----EAEPNEATLVNVLSACSSISA 57
++VV W+ MI GY E+G C EEA+ +F++M E +PN TLV+V++ACS + A
Sbjct: 339 KNVVCWSAMIAGY-EQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGA 397
Query: 58 LSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWST 114
+H Y ++T D + +A+I+M KCGD+ QVF+ + + + ++SWS+
Sbjct: 398 SRSASMIHKYAVATGLDQDAR--IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSS 455
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I ++G G++AL+LFS M G P+++T+I+++SACSH GLV+QG F +M Y
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDY 515
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P +HYAC+VD+ GRAG L+EA I MPI+A+ ++WG+LL AC +H N ++ + +
Sbjct: 516 GMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIV 575
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+++++ SVG L++N + A RW+D ++R E+RR GL+K G S+IE+ ++
Sbjct: 576 EKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVY 634
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 136/252 (53%), Gaps = 19/252 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
+ +RDVVSW ++I G+ G E A+ F++M E T EPN T++ +L +C+ + +
Sbjct: 228 IEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287
Query: 59 SFGQYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
+VH YIS+R+ ++ +V A+++M+ +CG++ +A ++F+ + K+++ WS +
Sbjct: 288 ETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAM 347
Query: 116 ISGLAMNGCGRQALQLFSLMIING------VFPDDVTFIALISACSHGGLVDQGLILFK- 168
I+G C +AL+LF M++ G V P+ VT +++I+ACS G ++ K
Sbjct: 348 IAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKY 407
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIH-- 225
A++T + + + ++DM + G +E EM V W +++ A IH
Sbjct: 408 AVATGLD--QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465
Query: 226 --RNDEMFDPIR 235
R E+F +R
Sbjct: 466 GKRALELFSEMR 477
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA------- 57
DVVSWT +I Y+ G +EA F M + + +E V+V+S + +SA
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178
Query: 58 --LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDMISWS 113
L G VH + +Y VS +GN++++MY C DVG A +VFN + +D++SW+
Sbjct: 179 NCLRRGSAVHGLV-VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWN 237
Query: 114 TVISGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAM 170
++ISG +NG +AL+ F M+ G V P+ VT IAL+ +C+ G V+ + + +
Sbjct: 238 SLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYI 297
Query: 171 STVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
S+ + + ++DM+ R G L A RE+
Sbjct: 298 SSRHSSLLVAKDVVVLTALLDMHARCGNL----ALAREI 332
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +D W ++I A + + A++ F M+ N T +L AC+++ L
Sbjct: 13 ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQ-AHAVPSNNFTFPALLKACAALRRLLP 70
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWSTVISG 118
VH+Y+ TR L+ A+++ Y KCG A QVF+ + D++SW+ +IS
Sbjct: 71 TLQVHAYL-TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129
Query: 119 LAMNGCGRQALQLFSLMI---------INGVFPDDVTFIALISACSHG 157
+ NGC +A F M GV D V+ AL+SAC+ G
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGV--DVVSLGALVSACAVG 175
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 173/289 (59%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVVS+ +M+ GY + + EA+ +F +MEK P+E TLV VLSA + + LS
Sbjct: 313 MPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 372
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H YI + + +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 373 AMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLA 431
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A + + + PDD+TF+ +++ACSH GLV +GL+ F+ M ++I P+
Sbjct: 432 IHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRL 491
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ R+G +E A+ I+EMPIE +W L AC H+ E + + + L+
Sbjct: 492 QHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLIL 551
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + ++ L+SN +A +W+D +IR ++ ++K GCSWIE++
Sbjct: 552 QAGYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELD 600
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 15/201 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALS 59
MP+RD VS+ +MI GY +RG E A +F M P E L++ S S + S
Sbjct: 186 MPQRDSVSFNSMIDGYVKRGLIESARELFDLM-------PREVKNLISWNSIISGYAQTS 238
Query: 60 FGQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G + S + ++ +L+ N++I+ YVK G + A +F+ + +D+++W+T+I G
Sbjct: 239 DGVDIASNLFA--EMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDG 296
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G QA LF M D V++ ++++ + L +F M + P
Sbjct: 297 YAKLGFVHQAKTLFDQM----PHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSP 352
Query: 179 QTQHYACVVDMYGRAGLLEEA 199
V+ + G L +A
Sbjct: 353 DETTLVIVLSAIAQLGRLSKA 373
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 37/233 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D W +I ++ ++A+ +F M + ++ ++ VL ACS + + G +
Sbjct: 89 DPFLWNAVIKSHSHGKDPKQALLLFCLMLENG-VSVDKFSMSLVLKACSRLGFVKGGLQI 147
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H I + L + N +I +Y+KCG +G A Q+F+ + +D +S++++I G G
Sbjct: 148 HG-ILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGL 206
Query: 125 GRQALQLFSLM------------IINGV----------------FP--DDVTFIALISAC 154
A +LF LM II+G P D +++ ++I
Sbjct: 207 IESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGY 266
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
G ++ LF AM ++V +A ++D Y + G + +A+ +MP
Sbjct: 267 VKHGRIEDAKDLFDAMPR-RDVVT----WATMIDGYAKLGFVHQAKTLFDQMP 314
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI- 165
+D W+ VI + +QAL LF LM+ NGV D + ++ ACS G V GL
Sbjct: 88 EDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQI 147
Query: 166 --LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--------VW 215
+ + ++ Q C++ +Y + G L A MP S V
Sbjct: 148 HGILRKTGLCSDLFLQN----CLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVK 203
Query: 216 GALLNACRIHRNDEMFDPIRQELVN 240
L+ + R E+FD + +E+ N
Sbjct: 204 RGLIESAR-----ELFDLMPREVKN 223
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V+SWT +I GYA+ G +A+ +F +E K +PNE ++ +VL ACS + AL
Sbjct: 174 MPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDI 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + +Y + V NAV+ ++ +CG++ A QVF+ + K ++ SW+T+I GL
Sbjct: 234 GKRIEAYARNN-GFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G ALQL+ M+I + PDDVTF+ L+ AC+HGG+V +G LF++M + +++ P+
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG L+EA I+ MP+ + +WG LL AC H N E+ + + L
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLF 412
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A W ++R ++ + K+ G S+IEV I
Sbjct: 413 KLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 33/256 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK V + I ++ G ++ +M ++ PN+ + + AC+S+ +
Sbjct: 42 IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQM-CSQGCSPNQYSFTFLFPACASLFNVYP 100
Query: 61 GQYVHSYI--------------------------STRY---DLSVSNL-VGNAVINMYVK 90
GQ +HS+ S R ++ V ++ N++I Y +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFIA 149
G + A+++FN + +++ISW+ +ISG A NG +AL++F L G P++V+ +
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ ACS G +D G + +A + V++++ R G +EEA+ E+ +
Sbjct: 221 VLPACSQLGALDIGKRI-EAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSK 279
Query: 210 AEWSVWGALLNACRIH 225
W ++ +H
Sbjct: 280 RNLCSWNTMIMGLAVH 295
>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 767
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 191/299 (63%), Gaps = 12/299 (4%)
Query: 4 RDVVSWTTMIGGYAERGFC-EEAVSVFQEMEKTK-----EAEPNEATLVNVLSACSSISA 57
++VV W+ MI GY E+G C EEA+ +F++M E +PN TLV+V++ACS + A
Sbjct: 339 KNVVCWSAMIAGY-EQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGA 397
Query: 58 LSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWST 114
+H Y ++T D + +A+I+M KCGD+ QVF+ + + + ++SWS+
Sbjct: 398 SRSASMIHKYAVATGLDQDAR--IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSS 455
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I ++G G++AL+LFS M G P+++T+I+++SACSH GLV+QG F +M Y
Sbjct: 456 MIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDY 515
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P +HYAC+VD+ GRAG L+EA I MPI+A+ ++WG+LL AC +H N ++ + +
Sbjct: 516 GMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIV 575
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+++++ SVG L++N + A RW+D ++R E+RR GL+K G S+IE+ ++
Sbjct: 576 EKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVY 634
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 136/252 (53%), Gaps = 19/252 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM--EKTKEAEPNEATLVNVLSACSSISAL 58
+ +RDVVSW ++I G+ G E A+ F++M E T EPN T++ +L +C+ + +
Sbjct: 228 IEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCV 287
Query: 59 SFGQYVHSYISTRYD---LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
+VH YIS+R+ ++ +V A+++M+ +CG++ +A ++F+ + K+++ WS +
Sbjct: 288 ETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAM 347
Query: 116 ISGLAMNGCGRQALQLFSLMIING------VFPDDVTFIALISACSHGGLVDQGLILFK- 168
I+G C +AL+LF M++ G V P+ VT +++I+ACS G ++ K
Sbjct: 348 IAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKY 407
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNACRIH-- 225
A++T + + + ++DM + G +E EM V W +++ A IH
Sbjct: 408 AVATGLD--QDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGE 465
Query: 226 --RNDEMFDPIR 235
R E+F +R
Sbjct: 466 GKRALELFSEMR 477
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 22/219 (10%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA------- 57
DVVSWT +I Y+ G +EA F M + + +E V+V+S + +SA
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178
Query: 58 --LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN--MLAYKDMISWS 113
L G VH + +Y VS +GN++++MY C DVG A +VFN + +D++SW+
Sbjct: 179 NCLRRGSAVHGLV-VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWN 237
Query: 114 TVISGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAM 170
++ISG +NG +AL+ F M+ G V P+ VT IAL+ +C+ G V+ + + +
Sbjct: 238 SLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYI 297
Query: 171 STVYE---IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
S+ + + ++DM+ R G L A RE+
Sbjct: 298 SSRHSSLLVAKDVVVLTALLDMHARCGNL----ALAREI 332
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +D W ++I A + + A++ F M+ N T +L AC+++ L
Sbjct: 13 ISHKDTFHWNSLIAKNATQNP-QTALTFFTRMQ-AHAVPSNNFTFPALLKACAALRRLLP 70
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWSTVISG 118
VH+Y+ TR L+ A+++ Y KCG A QVF+ + D++SW+ +IS
Sbjct: 71 TLQVHAYL-TRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129
Query: 119 LAMNGCGRQALQLFSLMI---------INGVFPDDVTFIALISACSHG 157
+ NGC +A + F M GV D V+ AL+SAC+ G
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGV--DVVSLGALVSACAVG 175
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W ++I G+AE G EEA++++ EM +K +P+ T+V++LSAC+ I AL+
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + L+ + N ++++Y +CG V A +F+ + K+ +SW+++I GLA
Sbjct: 241 GKRVHVYM-IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG G++A++LF M G+ P ++TF+ ++ ACSH G+V +G F+ M Y+I P+
Sbjct: 300 VNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPR 359
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VD+ RAG +++A +I+ MP++ +W LL AC +H + ++ + R +++
Sbjct: 360 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQIL 419
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D KIR ++ R G+KK G S +EV
Sbjct: 420 QLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 118/215 (54%), Gaps = 3/215 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W T+I GYAE G A S+++EM + EP+ T ++ A ++++ + G+ +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + R V N+++++Y CGDV A +VF+ + KD+++W++VI+G A NG
Sbjct: 144 HSVV-IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL L++ M G+ PD T ++L+SAC+ G + G + M V +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNLHSSN 261
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y R G +EEA+ EM ++ W +L+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 183/288 (63%), Gaps = 9/288 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W T+I YA G A+S++ +M + PN TL+ V+SAC+++ AL G+
Sbjct: 489 KGDVVTWNTLISSYAHLGHSNAAMSLYDQM-LIEGLTPNSTTLITVISACANLVALERGE 547
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+HSY+ YD+S++ A+I+MY KCG +GIA ++F+ + D+++W+ +ISG
Sbjct: 548 KIHSYVKEMGWDYDVSINT----ALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMISGY 603
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G +QAL+LF M + P+ VTF+A++SA H GL+++G +F M Y + P
Sbjct: 604 GMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGK-YSLEPN 662
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ G++G L+EAE + MPIE + +WG LL+AC++H N EM I ++
Sbjct: 663 LKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAF 722
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN++ GA +W++ K+R+ ++ +G++K G S ++
Sbjct: 723 ASDPENEGYYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAVD 770
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 137/286 (47%), Gaps = 19/286 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DVVSWT++IG Y RG EA+ +FQ+M ++ +P+E + VLS + +
Sbjct: 281 LPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESG-LQPDEILVSCVLSGLGNNGNVHG 339
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+ I+ R + S L+GNA+I+MY K V A +VF +L +D SW+ ++ G
Sbjct: 340 GKTFHAVITKR-NFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYC 398
Query: 121 MNGCGRQALQLFSLMIINGVF-----PDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
GC + L+L+ M + + D + ++ IS+CS L + L ++
Sbjct: 399 KAGCDVKCLELYREMQLRDKYEFWCVAD--SLVSAISSCSR--LAELRLGRSAHCYSIKH 454
Query: 176 IVPQTQHYACV-VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRNDEM-- 230
++ + A V + MYGR G + A ++ + W L++ A H N M
Sbjct: 455 LLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSL 514
Query: 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
+D + E + ++ T +R E KI ++ MG
Sbjct: 515 YDQMLIEGLTPNSTTLITVISACANLVALERGE---KIHSYVKEMG 557
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK---EAEPNEATLVNVLSACSSISA 57
MP+RDVV+WT +I G G E + EM + PN T+ + L AC +
Sbjct: 176 MPERDVVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDE 235
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
L+ G+ +H Y+ + + S +V +A+ +MY KC A +F L KD++SW+++I
Sbjct: 236 LNSGRCLHGYV-VKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIG 294
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G +A++LF M+ +G+ PD++ ++S + G V G F A+ T
Sbjct: 295 IYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKT-FHAVITKRNFG 353
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIR 204
++ MYG+ +++ A R
Sbjct: 354 DSVLIGNALISMYGKFEMVDSAGRVFR 380
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 105/231 (45%), Gaps = 13/231 (5%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ D W ++I + A+S + M + A P+ T SA + + AL G
Sbjct: 72 PRPDAFLWNSLIRTHHCASDFVAALSAHRRMLASG-ARPSPFTAPLAASASAELGALGVG 130
Query: 62 QYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
VH+Y RY L V + V ++++ MY +CG+V A++VF + +D+++W+ VIS
Sbjct: 131 AAVHAYC-VRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVIS 189
Query: 118 GLAMNGCGRQALQLFSLMII----NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
G NG + L+ M+ V P+ T + + AC ++ G L + V
Sbjct: 190 GCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKV 249
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CR 223
I + + MY + E+A A E+P E + W +L+ CR
Sbjct: 250 -GIGDSPMVISALFSMYSKCYSTEDACALFLELP-EKDVVSWTSLIGIYCR 298
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + DVV+W MI GY G ++A+ +F +ME +PN T + +LSA L
Sbjct: 588 MLQHDVVAWNVMISGYGMHGEAKQALELFGKMEG-GSIKPNGVTFLAILSALCHSGLLEE 646
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G+ V + + +Y L + ++++ K G + A V M D W T++S
Sbjct: 647 GRKVFTRMG-KYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSAC 705
Query: 120 AMN 122
++
Sbjct: 706 KLH 708
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 185/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D++SWT M+ G+ ++GF EEA+ F+EM+ + +P+ ++ L+AC+++ ALS
Sbjct: 141 MPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISG-VKPDYVAIIAALNACTNLGALSL 199
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A +VF+ + + ++SW++VI G A
Sbjct: 200 GLWVHRYVMSQ-DFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFA 258
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G P+ VTF ++ACSH GLVD+GL F++M Y I P+
Sbjct: 259 ANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRI 318
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL ACR H N+ + + + + L
Sbjct: 319 EHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLMKHLS 378
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+++R +++ +GLKK+ G S IE++
Sbjct: 379 DLNVKSHSNYVILSNMYAADAKWEGASRMRRKMKGLGLKKQPGFSSIEID 428
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 105/236 (44%), Gaps = 39/236 (16%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
+VSWT+ I EA F +M + EP T + +LS C + S G
Sbjct: 11 IVSWTSRITLLTRSAXLAEAAKEFADM-RLAGVEPTHITFIALLSGCGDFPSGSETLGDL 69
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------C 91
+H Y + + L ++ +VG A++ MY K
Sbjct: 70 LHGY-ACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRS 128
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A+++F+ + D+ISW+ +++G G +AL F M I+GV PD V IA +
Sbjct: 129 GQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQISGVKPDYVAIIAAL 188
Query: 152 SACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + MS ++ + + ++D+Y R G +E A +M
Sbjct: 189 NACTNLGALSLGLWVHRYVMSQDFKNNVRVSN--SLIDLYCRCGCVEFAREVFDKM 242
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 177/294 (60%), Gaps = 6/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRD+ SW +I G+A+ EA+S+F+ ME +PNE +++ LSAC+ +
Sbjct: 166 MVKRDIASWNALISGFAQGSKPTEALSLFKRME-IDGFKPNEISVLGALSACAQLGDFKE 224
Query: 61 GQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISG 118
G+ +H YI R+D++ V N VI+MY KCG V A VF +M KD+++W+T+I
Sbjct: 225 GEKIHGYIKVERFDMNAQ--VCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMA 282
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G G +AL+LF M +GV PDDV+++A++ AC+HGGLV++G LF +M + P
Sbjct: 283 FAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENC-GVKP 341
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY VVD+ GRAG L EA + MP + +W LL A R HRN E+ + + ++L
Sbjct: 342 NVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKL 401
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
V G F L+SN +A +RW D ++R+ ++ +KK G S+IE N I
Sbjct: 402 VEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVI 455
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 115/241 (47%), Gaps = 7/241 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I G+ + A + ++ M +K + + T VL AC+ + A +H++I
Sbjct: 73 WNAIIRGFIQSPNPTNAFAWYKSM-ISKSRKVDALTCSFVLKACARVLARLESIQIHTHI 131
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R L+G ++++Y K G++ A +VF+ + +D+ SW+ +ISG A +A
Sbjct: 132 -VRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEA 190
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L LF M I+G P++++ + +SAC+ G +G + + V Q V+D
Sbjct: 191 LSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIK-VERFDMNAQVCNVVID 249
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGV 244
MY + G +++A M + W ++ A +H + E+F+ + Q V+ V
Sbjct: 250 MYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDV 309
Query: 245 S 245
S
Sbjct: 310 S 310
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 176/287 (61%), Gaps = 4/287 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSWT M+ GY++ EA+ +F EM P+E T+V+V+SAC+++ +
Sbjct: 214 MPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAG-IRPDEVTIVSVISACTNLGDVET 272
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VHSYI+ + VS + NA+INMY KCG V A +VFN + K +I+W+++IS
Sbjct: 273 GMNVHSYINENGFGWMVS--LCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISAC 330
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G A +LFS M+ +G+ PD +TF+AL+ A +H GLVD+G LF+ M Y I
Sbjct: 331 ANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEAS 390
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM GRAG LEEA I MPI + VWGALL ACRI+ + M + + ++L+
Sbjct: 391 IEHYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLL 450
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
K G + L+ + + + R +AN IR ++ G K G SW+
Sbjct: 451 ELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWV 497
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 122/269 (45%), Gaps = 55/269 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ + + T+I GYA+ V++F +M + +P+E T ++ A S +
Sbjct: 76 MPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQM-RQNHVDPDEFTFNFLIKARSRV----- 129
Query: 61 GQYVHSYIST-----------RYDLSVSNLVGNAVINMY--------------------- 88
VH++ ST +Y V NA+IN+Y
Sbjct: 130 -HKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDV 188
Query: 89 ----------VKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
V+ G++ +A QVF+ + KD++SW+ ++SG + C R+AL+LF M
Sbjct: 189 VSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDA 248
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLL 196
G+ PD+VT +++ISAC++ G V+ G+ S + E C +++MY + G +
Sbjct: 249 GIRPDEVTIVSVISACTNLGDVETGM---NVHSYINENGFGWMVSLCNALINMYAKCGCV 305
Query: 197 EEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ A M W ++++AC H
Sbjct: 306 DRAWRVFNNMK-RKSLITWNSMISACANH 333
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK-CGDVGIAIQVF 101
+ L ++ C S++ L + HS ++ ++ SV ++G + V GD+ A ++F
Sbjct: 17 SILASIAENCQSMNHLK-QIHAHSLLTDLHNHSV--ILGKMLRFAAVSPSGDLPYAQRLF 73
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+ + + ++T+I G A + + LF+ M N V PD+ TF LI A S
Sbjct: 74 DQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARS 127
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W ++I G+AE G EEA++++ EM +K +P+ T+V++LSAC+ I AL+
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMN-SKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + L+ + N ++++Y +CG V A +F+ + K+ +SW+++I GLA
Sbjct: 241 GKRVHVYM-IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG G++A++LF M G+ P ++TF+ ++ ACSH G+V +G F+ M Y+I P+
Sbjct: 300 VNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPR 359
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VD+ RAG +++A +I+ MP++ +W LL AC +H + ++ + R +++
Sbjct: 360 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQIL 419
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D KIR ++ R G+KK G S +EV
Sbjct: 420 QLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 118/215 (54%), Gaps = 3/215 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W T+I GYAE G A S+++EM + EP+ T ++ A ++++ + G+ +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + R V N+++++Y CGDV A +VF+ + KD+++W++VI+G A NG
Sbjct: 144 HSVV-IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL L++ M G+ PD T ++L+SAC+ G + G + M V +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNLHSSN 261
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y R G +EEA+ EM ++ W +L+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 180/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++VSW MIGGY + EA+ +F+E++ + EPNE T+V++L A +++ AL
Sbjct: 256 MPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALEL 315
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH ++ R L + V ++++MY+KCG++ A +VF+ + K+ +W+ +I+G A
Sbjct: 316 GEWVHRFVQ-RKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFA 374
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG +AL+ FS M G+ P+D+T ++SACSHGGLV++G FKAM + P+
Sbjct: 375 MNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM-IESGLSPKI 433
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE I+ MP EA + + AC + + + VN
Sbjct: 434 EHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQRVLNQAVN 493
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + +M N +A +RW+D +I +RR G KK+ G S IEV+ +
Sbjct: 494 MEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRV 545
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 25/228 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSWT +IGGY RG A +F+ M A N ++ + +
Sbjct: 163 MPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNL-----LIDGYVKVGDMES 217
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R +S ++++ Y GDV A +F+ + K+++SW+ +I G
Sbjct: 218 ARSLFDEMPERNVISWTSMIYG-----YCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYC 272
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +AL+LF + + VF P++VT ++++ A + G ++ G V+ V +
Sbjct: 273 QNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELG-------EWVHRFVQR 325
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ A V VDMY + G + +A E+P + E + W AL+N
Sbjct: 326 KKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIP-KKETATWNALING 372
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
+A ++++++ + P+ T + C+ A+ G H ++ + V A
Sbjct: 84 DAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHV-VKIGFCFDMYVSTA 142
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP- 142
+++MY K G++G+A +VFN + + ++SW+ +I G G A LF LM P
Sbjct: 143 LVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLM------PG 196
Query: 143 -DDVTFIALISACSHGGLVDQGLILFKAM 170
D F LI G ++ LF M
Sbjct: 197 RDSAAFNLLIDGYVKVGDMESARSLFDEM 225
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 181/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ +SWT +IGG+ ++ + EEA+ F+EM+ + A P+ T++ V++AC+++ L
Sbjct: 187 LPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVA-PDYVTVIAVIAACANLGTLGL 245
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH + T+ D + V N++I+MY +CG + +A QVF+ + + ++SW+++I G A
Sbjct: 246 GLWVHRLVMTQ-DFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFA 304
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +AL F+ M G PD V++ + ACSH GL+ +GL +F+ M V I+P+
Sbjct: 305 VNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRI 364
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+Y RAG LEEA ++ MP++ + G+LL ACR N + + + L+
Sbjct: 365 EHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIE 424
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN +A +W+ ANK+R ++ G++KK G S IE++ SI
Sbjct: 425 LDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSSI 476
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 44/292 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS---SISALSFGQ 62
+VSWTT I Y + G +A S F +M + EPN T + +LSAC+ S S++SFG
Sbjct: 56 IVSWTTSIADYCKSGHLVKAASKFVQMREAA-IEPNHITFITLLSACAHYPSRSSISFGT 114
Query: 63 YVHSYISTRYDLSVSN-LVGNAVINMYVKCGDV----------GI--------------- 96
+H+++ + L +++ +VG A+I+MY KCG V G+
Sbjct: 115 AIHAHVR-KLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMR 173
Query: 97 ------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
A+QVF+ L K+ ISW+ +I G +AL+ F M ++GV PD VT IA+
Sbjct: 174 NGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAV 233
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
I+AC++ G + GL + + + T + + ++DMY R G ++ A MP
Sbjct: 234 IAACANLGTLGLGLWVHRLVMT-QDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRT 292
Query: 211 EWSVWGALLNACRIH-RNDE---MFDPIRQELVNKKGVSVGTFALMSNTFAG 258
S W +++ ++ DE F+ +++E GVS T ALM+ + AG
Sbjct: 293 LVS-WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSY-TGALMACSHAG 342
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/285 (38%), Positives = 179/285 (62%), Gaps = 5/285 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW +MI YA+ G E++++F +M+ ++ P+ T V+VLSACS++ L F
Sbjct: 219 MPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQ-SEGVTPDGYTFVSVLSACSNLGDLEF 277
Query: 61 GQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+Y+H Y+S DLS S +VG A+ MY +CGDV A VF + +D+ W+ +I L
Sbjct: 278 GKYIH-YLSG--DLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVFCWNVIIKAL 334
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G +A+++F LM G+ P+D TF + + ACSHGGLV++G I+F +M Y+I+P+
Sbjct: 335 ALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIFNSMEKDYKIIPK 394
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C++DM R G LEEA + +MP + + ++WGALL CR+ + ++ + + ++
Sbjct: 395 ITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEKAT 454
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCS 284
+ G + L+SN A A +W +A R ++ + KKTG S
Sbjct: 455 EMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISKKTGSS 499
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 47/258 (18%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW +MI GYA+ G A +F++M + NV+S S I A
Sbjct: 157 MPERDIVSWNSMILGYAKGGKVANARGLFEKMPEK-----------NVISWTSMIGA--- 202
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
Y D+ A F + ++++SW+++IS A
Sbjct: 203 ---------------------------YADTDDLETARSFFETMPQRNVVSWNSMISSYA 235
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G ++L LF M GV PD TF++++SACS+ G ++ G + + + +
Sbjct: 236 KHGKFVESLNLFVQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQ--SEV 293
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELV 239
+ +MY + G +++A A ++ + + W ++ A +H R++E L+
Sbjct: 294 MVGTALTEMYAQCGDVDKAFAVFIKIG-KRDVFCWNVIIKALALHGRSEEAIKIFL--LM 350
Query: 240 NKKGVSVGTFALMSNTFA 257
K G+ F S FA
Sbjct: 351 RKTGLKPNDFTFTSALFA 368
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++V W MI GYA G +E + +F EM + + +P+ T V+++C + G+ V
Sbjct: 18 EIVIWNAMIRGYAFNGPFQECIRMFDEMPQ-RGLKPHNFTYPYVINSCCELEWYGRGKRV 76
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCG---DVGIAI--------QVFNMLAYKDMISWS 113
H I + S V N++ NMY+K DVG+A ++F+ + + + W+
Sbjct: 77 HCEI-VKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWN 135
Query: 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173
+I G + A +LF +M D V++ ++I + GG V LF+ M
Sbjct: 136 QMIGKYVNIGDVKSARELFDIMPER----DIVSWNSMILGYAKGGKVANARGLFEKMPEK 191
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
I + ++ Y LE A +F MP
Sbjct: 192 NVI-----SWTSMIGAYADTDDLETARSFFETMP 220
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+V+SWT +I GYA+ G +A+ +F +E K +PNE ++ +VL ACS + AL
Sbjct: 174 MPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDI 233
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + +Y + V NAV+ ++ +CG++ A QVF+ + K ++ SW+T+I GL
Sbjct: 234 GKRIEAYARNN-GFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A++G ALQL+ M+I + PDDVTF+ L+ AC+HGG+V +G LF++M + +++ P+
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG L+EA I+ MP+ + +WG LL AC H N E+ + + L
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLF 412
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A W ++R ++ + K+ G S+IEV I
Sbjct: 413 KLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 115/256 (44%), Gaps = 33/256 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK V + I ++ G ++ +M ++ PN+ + + AC+S+ +
Sbjct: 42 IPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQM-CSQGCSPNQYSFTFLFPACASLFNVYP 100
Query: 61 GQYVHSYI--------------------------STRY---DLSVSNLVG-NAVINMYVK 90
GQ +HS+ S R ++ V ++ N++I Y +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFIA 149
G + A+++FN + +++ISW+ +ISG A NG +AL++F L G P++V+ +
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIAS 220
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ ACS G +D G + +A + V++++ R G +EEA+ E+ +
Sbjct: 221 VLPACSQLGALDIGKRI-EAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSK 279
Query: 210 AEWSVWGALLNACRIH 225
W ++ +H
Sbjct: 280 RNLCSWNTMIMGLAVH 295
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 176/293 (60%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+ VSW+ +I G+ + +E VF EM E PN++T ++L AC+S ++L
Sbjct: 408 MPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEI-PNKSTFSSLLCACASTASLDK 466
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I + + VG A+ +MY K GD+ + +VFN + K+ +SW+ +I GLA
Sbjct: 467 GKNLHGKI-VKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLA 525
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G ++L LF M + + P++V F+A++ ACSH GLVD+GL F +M VY + P+
Sbjct: 526 ESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPK 585
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ CVVDM RAG L EAE FI MP + E + W ALL+ C+ ++N+E+ + + +L
Sbjct: 586 GRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLW 645
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + L+SN +A A RW D K+R ++ GLKK GCSW+E+ +
Sbjct: 646 EMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRV 698
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 39/254 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSW+ MI Y + G+ EE++ +F M + + +PN + ++LSA +S+ AL
Sbjct: 276 MPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQ-EGFKPNISCFSSILSALASVEALQA 334
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ T+ V +++I+MY KCG+ +F+ + K+M+SW+ ++ G +
Sbjct: 335 GMNIHGHV-TKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYS 393
Query: 121 MNGCGRQALQLFSL-------------------------------MIINGVFPDDVTFIA 149
+NG +A LF++ MI+ G P+ TF +
Sbjct: 394 LNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSS 453
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMP 207
L+ AC+ +D+G L + ++ Q Y + DMY ++G +E ++ MP
Sbjct: 454 LLCACASTASLDKGKNLH---GKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMP 510
Query: 208 IEAEWSVWGALLNA 221
+ E S W A++
Sbjct: 511 KKNEVS-WTAMIQG 523
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 122/249 (48%), Gaps = 35/249 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P ++VVSWT I GY + GF EA+ +F ++ ++ E +PN+ T +V+ AC+++ G
Sbjct: 145 PFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLES-EVKPNKVTFTSVVRACANLGDFGLG 203
Query: 62 QYVHSYI---STRYDLSVSN---------------------------LVGNAVINMYVKC 91
V I +DL+VSN + A++++YV+
Sbjct: 204 MSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEM 263
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
++G A ++F+ + ++ +SWS +I+ +G ++L+LF MI G P+ F +++
Sbjct: 264 DELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSIL 323
Query: 152 SACSHGGLVDQGLILFKAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
SA + + G+ + ++ + +E + ++DMY + G ++ F+ + +E
Sbjct: 324 SALASVEALQAGMNIHGHVTKIGFE--KDVFVSSSLIDMYCKCGETKDGR-FLFDTILEK 380
Query: 211 EWSVWGALL 219
W A++
Sbjct: 381 NMVSWNAMV 389
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 42/172 (24%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V MI +RG +EA +F EM +T E
Sbjct: 86 DLVVHNCMISANVQRGNLDEARKLFDEMPQTNE--------------------------- 118
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
+ A+I+ ++K G V ++ F +++++SW+ ISG NG
Sbjct: 119 --------------ISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGF 164
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYE 175
+A++LF ++ + V P+ VTF +++ AC++ G G+ +L + T YE
Sbjct: 165 SVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYE 216
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 21/202 (10%)
Query: 79 LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138
+V N +I+ V+ G++ A ++F+ + + ISW+ +ISG G R+++ F
Sbjct: 88 VVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFE----R 143
Query: 139 GVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQTQHYACVVDM---YGRAG 194
F + V++ A IS G + + LF K + + E+ P + VV G G
Sbjct: 144 NPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLES--EVKPNKVTFTSVVRACANLGDFG 201
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQELVNKKGVSVGTFA 250
L I + E + +V +L+ C IH E+FD + ++ V ++
Sbjct: 202 LGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEK-------DVVSWT 254
Query: 251 LMSNTFAGADRWEDANKIRDEI 272
+ + + D +A +I DE+
Sbjct: 255 AILDLYVEMDELGEARRIFDEM 276
>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 745
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 174/290 (60%), Gaps = 22/290 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+DV W+ +I YA ++ ++F EM + +PN T+V++LS C+ AL G+
Sbjct: 355 KKDVKIWSVLISAYAHVSCMDQVFNLFVEM-LNNDVKPNNVTMVSLLSLCAEAGALDLGK 413
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ H+YI+ R+ L V ++ A+INMY KCGDV IA +FN +D+ W+T+++G +M+
Sbjct: 414 WTHAYIN-RHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMH 472
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GCG++AL+LFS M +GV P+D+TF+++ ACSH GL+ +H
Sbjct: 473 GCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM--------------------EH 512
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+VD+ GRAG L+EA I MP+ +WGALL AC++H+N + + ++++
Sbjct: 513 YGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELD 572
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L SN +A A RW D +R+ + G+KK+ G SWIEV+ S+
Sbjct: 573 PQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSV 622
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 10/228 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ KR VVSWT MI G +E F M + K PNE TL+++++ C + L
Sbjct: 252 LSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEK-LFPNEITLLSLITECGFVGTLDL 310
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H+Y+ R +S + A+I+MY KCG VG A +FN + KD+ WS +IS A
Sbjct: 311 GKWFHAYL-LRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYA 369
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG---LILFKAMSTVYEIV 177
C Q LF M+ N V P++VT ++L+S C+ G +D G +++
Sbjct: 370 HVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVI 429
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+T +++MY + G + A + E ++ + +W ++ +H
Sbjct: 430 LETA----LINMYAKCGDVTIARSLFNE-AMQRDIRMWNTMMAGFSMH 472
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 126/247 (51%), Gaps = 15/247 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWTTM+G Y EA+ + +EM+ + + L+++++ ++ +
Sbjct: 149 MPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVG-VKLSGVALISLIAVFGNLLDMKS 207
Query: 61 GQYVHSYISTRY-DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH YI D + + A+I+MY K G + A ++F+ L+ + ++SW+ +I+G
Sbjct: 208 GRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGC 267
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVY 174
+ + + F+ M+ +FP+++T ++LI+ C G +D G +L
Sbjct: 268 IRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSL 327
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDP 233
+V ++DMYG+ G + A A + + + +W L++A + D++F+
Sbjct: 328 ALV------TALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISAYAHVSCMDQVFNL 380
Query: 234 IRQELVN 240
+ L N
Sbjct: 381 FVEMLNN 387
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 17/240 (7%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY 67
++ +I Y + + + + M A + L ++L AC+ S+ G+ +H +
Sbjct: 54 NYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGF 113
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+ + + V NA++NMY KCG + A VF+ + +D++SW+T++ + +
Sbjct: 114 -AQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGE 172
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTVYEIVPQT 180
AL+L M GV V I+LI+ G L+D G I+ E+ T
Sbjct: 173 ALRLVREMQFVGVKLSGVALISLIAV--FGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTT 230
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA--EWSVW-GALLNACRIHRNDEMFDPIRQE 237
++DMY + G L A+ + + W+V + +CR+ + F+ + +E
Sbjct: 231 A----LIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEE 286
>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 180/289 (62%), Gaps = 5/289 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V W ++IGG+A+ +E + +++ M++ + +++TL +VL AC+ ++ L G+ V
Sbjct: 179 DLVVWNSIIGGFAQNSDGDETLHLYKRMKRA-DFVADQSTLTSVLRACTGLALLELGRQV 237
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVISGLAMNG 123
H ++ +YD + ++ NA+++MY KCG + A +F M+ KD+ISWST+I+GLA NG
Sbjct: 238 HVHV-LKYDQDL--ILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNG 294
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
AL+LF M G P+ +T + ++ ACSH GLV+ G F++M + I P +HY
Sbjct: 295 FSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHY 354
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C++D+ GRAG L+EA I EM E + W LL ACR+H+N ++ +E++
Sbjct: 355 GCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDP 414
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A + +WED ++R ++R G+KK GCSWIEV+ +
Sbjct: 415 ADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQV 463
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 103/223 (46%), Gaps = 16/223 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VVSWTTMI Y+ +A+ M + + PN T +VL AC + L
Sbjct: 77 MPDRNVVSWTTMISAYSNSNLNHKALDFLILMLR-EGVRPNMYTYSSVLRACDGLLNL-- 133
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I+ Y K G+ A+ VFN + D++ W+++I G A
Sbjct: 134 -RQLHGSI-LKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY-EIVPQ 179
N G + L L+ M D T +++ AC+ GL L + V+ ++
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACT-------GLALLELGRQVHVHVLKY 244
Query: 180 TQHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
Q ++DMY + G LE+A M E + W ++
Sbjct: 245 DQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMI 287
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DV+SW+TMI G A+ GF +A+ +F+ M K+K +PN T++ VL ACS ++
Sbjct: 275 MTEKDVISWSTMIAGLAQNGFSADALKLFEAM-KSKGPKPNYITILGVLFACSHAGLVND 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVI 116
G Y + + + +I++ + G + A+++ + + ++ D ++W ++
Sbjct: 334 GWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILL 390
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
T ++ C A+ + VH ++ S Y+ + N +INMYVK G + A +F+
Sbjct: 18 TYSELIKCCLVRGAVQQARLVHEHVFSNGYE--PKTFLINTLINMYVKFGLLDEARNLFD 75
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162
+ ++++SW+T+IS + + +AL LM+ GV P+ T+ +++ AC GL++
Sbjct: 76 EMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD--GLLN- 132
Query: 163 GLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
L + ++ ++ ++ + + ++D Y + G +A EM I + VW +++
Sbjct: 133 ---LRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDLVVWNSII 187
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 183/293 (62%), Gaps = 5/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEME---KTKEAEPNEATLVNVLSACSSISA 57
M R++++W ++I G + G +E++ +F EM+ +P++ T+ +VLSAC+ + +
Sbjct: 221 MNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLGS 280
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ G++VH+Y+ + D+ ++G A++NMY KCGDV AI++FN + KD +W+ +IS
Sbjct: 281 IDHGKWVHAYLR-KNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMIS 339
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
A++G G++A F M GV P+ VTF+ L+SACSH GLV+QG F M VY I
Sbjct: 340 VFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIE 399
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
PQ HYAC+VD+ RA L +EA IR MP++ + VWGALL C++H N ++ + +
Sbjct: 400 PQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGALLGGCQMHGNIKLGEKVAHY 459
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVN 289
L++ + + + + + + A +++ A +IR+ ++ G++ K GCS IE+N
Sbjct: 460 LIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEIN 512
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 121/249 (48%), Gaps = 40/249 (16%)
Query: 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYISTR 71
I G + C +A+ ++++M K PN T ++ CS + + G+ +H+++ +
Sbjct: 100 IEGGDDSNCCYKALMLYKQM-LNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHV-LK 157
Query: 72 YDLSVSNLVGNAVINM-------------------------------YVKCGDVGIAIQV 100
+ VGN++I++ Y++ G+V +A+ +
Sbjct: 158 FGFLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNL 217
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IING---VFPDDVTFIALISACSH 156
F + +++I+W+++I+GL G +++L++F M ++G V PD +T +++SAC+
Sbjct: 218 FRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACAL 277
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G +D G + + +I +V+MYG+ G +++A +MP E + S W
Sbjct: 278 LGSIDHGKWVHAYLRK-NDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMP-EKDASAWT 335
Query: 217 ALLNACRIH 225
A+++ +H
Sbjct: 336 AMISVFALH 344
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 176/287 (61%), Gaps = 4/287 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWT M+ GYA+ EA+ +F+EM P+E +V+V+SAC+S+ L
Sbjct: 378 MPERDVVSWTVMVSGYAQAKRSREALELFREMRDVG-VRPDEVAMVSVISACTSLGDLET 436
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH YI + VS + NA+I+MY KCG + +A QVFN + K +I+W+++IS
Sbjct: 437 GFEVHRYIDENGFGWMVS--LCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 494
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G A ++F+LM+ +G+ PD VTF+AL++A +H G VD G LF++M Y +
Sbjct: 495 ANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 554
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM GRAG LEEA I M + VWGALL ACRI+ + EM + + ++L+
Sbjct: 555 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 614
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
K G + L+ + + A R +A ++R + G KK GCSW+
Sbjct: 615 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 661
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
+ ++ +V+ G++ +A QVF + +D++SW+ ++SG A R+AL+LF M GV
Sbjct: 356 SGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVR 415
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEA 199
PD+V +++ISAC+ G ++ G F+ + E C ++DMY + G ++ A
Sbjct: 416 PDEVAMVSVISACTSLGDLETG---FEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLA 472
Query: 200 EAFIREMPIEAEWSVWGALLNACRIHRNDE 229
M ++ + W ++++AC H N E
Sbjct: 473 WQVFNNMERKSLIT-WNSMISACANHGNAE 501
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 122/308 (39%), Gaps = 47/308 (15%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEME----------------------------KTKEA 38
VSWT M+ YA+ E + +F+E+ K
Sbjct: 119 VSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTDVVTMGVDYDKYKTLKSYISNKVMHM 178
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGDVGI 96
P +L ++ AC ++ AL +H+ ++ R +L LV + G +
Sbjct: 179 LPTSQSLASMAEACLTMQALKL---IHA-LAFRANLHHHALVLAKIFRFAAVSPNGCLHY 234
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A ++F+ + + ++T+I G + + Q++QLF+ M N V PD TF L+ S
Sbjct: 235 ADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSR 294
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQH------YACVVDMYGRAGLLEEAEAFIREMPIEA 210
+ L L A ++ V + ++ +Y G+ A EM + A
Sbjct: 295 ---MRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEM-VGA 350
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ W L+ A H + RQ V ++ +M + +A A R +A ++
Sbjct: 351 DVVSWSGLVVA---HVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFR 407
Query: 271 EIRRMGLK 278
E+R +G++
Sbjct: 408 EMRDVGVR 415
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 176/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++VSW ++I G ++ EA+ F+ M+ K + TL +L C+ ++AL
Sbjct: 238 MPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQG-KGMGFSWVTLTTILPVCARVTALGS 296
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + V N++++MY KCG + +VFN + KD+ SW+T+I+G A
Sbjct: 297 GKEIHAVI-VKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYA 355
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG +A++ F MI +G PD +TFIAL+S CSH GL D G LF+ M + I P
Sbjct: 356 INGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMKMDHGISPTV 415
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++EA ++ MP + S+WG+LLN+CR+H N + + + + L
Sbjct: 416 EHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKRLFE 475
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A WE +R+ + + G+ K+ GCSW+++ I
Sbjct: 476 LEPNNAGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAGCSWLQIKSKI 527
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W M GY+ G+ +EA+ ++ EM + + L ACS + L G+ VH+ +
Sbjct: 145 WVAMGIGYSRNGYPKEALLLYYEM-VCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQV 203
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ +V NA++ +Y + G A+++F+ + +++++SW+++I+GL +A
Sbjct: 204 -LKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEA 262
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
++ F +M G+ VT ++ C+ + G + A+ P +VD
Sbjct: 263 IEAFRIMQGKGMGFSWVTLTTILPVCARVTALGSGKEI-HAVIVKSTAKPDAPVLNSLVD 321
Query: 189 MYGRAGLLE 197
MY + G ++
Sbjct: 322 MYAKCGAMD 330
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 29/253 (11%)
Query: 17 AERGFCEEAVSVFQE-MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75
++ G +EA+ + + K+ P+ L +C S AL GQ ++ + D
Sbjct: 41 SKSGKLDEALRLIESWPSKSPATAPDVEACALFLHSCISRKALEHGQRLYLQLLLYRDRC 100
Query: 76 VSNLVGNA-----VINMYVKCGDVGIAIQVFNMLAYK-DMIS--WSTVISGLAMNGCGRQ 127
NL+ N +I ++ CG V A +VF D+ W + G + NG ++
Sbjct: 101 NHNLLNNPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGIGYSRNGYPKE 160
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
AL L+ M+ + F + ACS G + G + + E Q + A ++
Sbjct: 161 ALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNA-LL 219
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV--S 245
+Y G EEA MP HRN ++ + LV K+GV +
Sbjct: 220 RLYSEDGCFEEALRMFDGMP-----------------HRNLVSWNSLIAGLVKKEGVFEA 262
Query: 246 VGTFALMSNTFAG 258
+ F +M G
Sbjct: 263 IEAFRIMQGKGMG 275
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W ++I G+AE G EEA++++ EM +K +P+ T+V++LSAC+ I AL+
Sbjct: 49 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 107
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + L+ + N ++++Y +CG V A +F+ + K+ +SW+++I GLA
Sbjct: 108 GKRVHVYM-IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 166
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG G++A++LF M G+ P ++TF+ ++ ACSH G+V +G F+ M Y+I P+
Sbjct: 167 VNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPR 226
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VD+ RAG +++A +I+ MP++ +W LL AC +H + ++ + R +++
Sbjct: 227 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQIL 286
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D KIR ++ R G+KK G S +EV
Sbjct: 287 QLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 335
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 90/165 (54%), Gaps = 3/165 (1%)
Query: 55 ISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
++ + G+ +HS + R V N+++++Y CGDV A +VF+ + KD+++W++
Sbjct: 1 MADVRLGETIHSVV-IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNS 59
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
VI+G A NG +AL L++ M G+ PD T ++L+SAC+ G + G + M V
Sbjct: 60 VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV- 118
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ ++D+Y R G +EEA+ EM ++ W +L+
Sbjct: 119 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/288 (40%), Positives = 179/288 (62%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRDVVSWT ++GGYA+ G E+ S F++M + + E N+ T + VL ACS+ AL +
Sbjct: 408 MPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQ-QGVEANKITYMCVLKACSNPVALKW 466
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + + V NA+++MY KCG V AI+V ++ +D+++W+T+I GLA
Sbjct: 467 GKEIHAEV-VKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLA 525
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G +ALQ F +M + P+ TF+ ++SAC LV++G F +M Y IVP
Sbjct: 526 QNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTE 585
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ RAG L EAE I MP + ++WGALL ACR H N E+ + ++ +
Sbjct: 586 KHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLK 645
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + GT+ +S +A A W D K+R ++ G+KK+ G SWIEV
Sbjct: 646 LEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEV 693
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 12/223 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD VSWTT+ G YAE G+ +E++ + M + + P+ T +NVLSAC S++AL
Sbjct: 206 MASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ-EGVRPSRITYMNVLSACGSLAALEK 264
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H+ I D+ VS A+ MY+KCG V A +VF L +D+I+W+T+I
Sbjct: 265 GKQIHAQIVESEHHSDVRVST----ALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEI 176
GL +G +A +F M+ V PD VT++A++SAC+ GGL I +A+ +
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD--GL 378
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
V + +++MY +AG +++A MP + + W AL+
Sbjct: 379 VSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 141/245 (57%), Gaps = 18/245 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ VVSW MI GYA RG +EA ++F M++ + EP++ T V++LSACSS +AL++G+
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQ-EGLEPDKFTFVSILSACSSPAALNWGRE 166
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + L+ + VGNA+I+MY KCG V A +VF+ +A +D +SW+T+ A +G
Sbjct: 167 VHVRV-MEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+++L+ + M+ GV P +T++ ++SAC +++G ++ + +++H+
Sbjct: 226 YAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKG-------KQIHAQIVESEHH 278
Query: 184 A------CVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPI 234
+ + MY + G +++A +P + A ++ G L+++ ++ MF +
Sbjct: 279 SDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM 338
Query: 235 RQELV 239
+E V
Sbjct: 339 LKECV 343
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV++W TMIGG + G EEA +F M K A P+ T + +LSAC+ L+
Sbjct: 307 LPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA-PDRVTYLAILSACARPGGLAC 365
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + L GNA+INMY K G + A QVF+ + +D++SW+ ++ G A
Sbjct: 366 GKEIHAR-AVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYA 424
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
G ++ F M+ GV + +T++ ++ ACS+
Sbjct: 425 DCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSN 460
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
V +L +C L+ G+ VH +I R+ + + + N ++ +YV CG V A ++F+ +
Sbjct: 48 VKLLQSCVKAKDLAVGKQVHEHI-LRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
K ++SW+ +ISG A G G++A LF+LM G+ PD TF++++SACS ++ G
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWG 164
>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
Length = 451
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V SW TMI +E G + V VF M T EP+ AT+ ++SAC+ + +L+
Sbjct: 134 MTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATG-FEPDAATMAVLMSACAQLGSLTI 192
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH + + + ++ V N++I+MY KCG + A +F KD +S++ +I A
Sbjct: 193 AGQVHGLLQ-KSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFA 251
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R AL LF+ M+ +G+ PD VTF+ ++SAC+H GLV+ G F+ M T Y +
Sbjct: 252 QHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSP 311
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYACVVD+YGRAGL+EEA F++ MP++ VWGALLNACR H + ++ + +EL+
Sbjct: 312 DHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIR 371
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+ NT A +W+ ++ +RR + K GCSW+EV+
Sbjct: 372 IEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVD 420
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTR--------------------------- 71
PN T+ +V+ CS + A+ G VH++++
Sbjct: 7 RPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVGDAR 66
Query: 72 --YD-LSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG---- 123
+D + V N+V GN ++ V+ GD+G A +VF+ +A +D ISW+T++SG G
Sbjct: 67 RVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTAT 126
Query: 124 ----------------------CGRQA-----LQLFSLMIINGVFPDDVTFIALISACSH 156
C + +++F+ M G PD T L+SAC+
Sbjct: 127 VRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQ 186
Query: 157 -GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
G L G + + E+ Q+ ++DMY + G + +A+ E
Sbjct: 187 LGSLTIAGQVHGLLQKSCVEMNCHVQN--SLIDMYAKCGCISQAQFLFTE 234
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
M+ +G P+ T ++I CS V +GL + ++ A ++D+YG G
Sbjct: 1 MLWSGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIG 60
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-----EMFD 232
L+ +A EMP++ V G + AC + D E+FD
Sbjct: 61 LVGDARRVFDEMPVKN--VVVGNTMVACNVRAGDMGAAREVFD 101
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/294 (37%), Positives = 186/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW MI GY++ GF +A+ +FQ++ + +P+E T+V LSACS I AL
Sbjct: 216 MCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALET 275
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H ++ S+R L+V V A+I+MY KCG + A+ VFN KD+++W+ +I+G
Sbjct: 276 GRWIHVFVNSSRIRLNVK--VCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGY 333
Query: 120 AMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G + AL+LF M I G+ P D+TFI + AC+H GLV++G+ +F++M Y I P
Sbjct: 334 AMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKP 393
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+V + GRAG L+ A I+ M +EA+ +W ++L +C++H + I + L
Sbjct: 394 KIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYL 453
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + L+SN +A +E K+R+ ++ G+ K+ G S IE++ +
Sbjct: 454 IGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKV 507
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 118/253 (46%), Gaps = 40/253 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ +T I + G ++A ++ ++ + + PNE T ++L +CS+ S G+ +
Sbjct: 92 DLFLFTAAINTASINGLKDQAFLLYVQL-LSSQINPNEFTFSSILKSCSTKS----GKLI 146
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----------------- 107
H+++ ++ L + V ++++Y K GDV A +VF+ + +
Sbjct: 147 HTHV-LKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN 205
Query: 108 --------------DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALIS 152
D++SW+ +I G + +G AL LF ++ +G PD++T +A +S
Sbjct: 206 VEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALS 265
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
ACS G ++ G + +++ I + ++DMY + G LEEA + P +
Sbjct: 266 ACSQIGALETGRWIHVFVNSS-RIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTP-RKDI 323
Query: 213 SVWGALLNACRIH 225
W A++ +H
Sbjct: 324 VAWNAMITGYAMH 336
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y G + ++ +F+ D+ ++ I+ ++NG QA L+ ++ + + P++ TF
Sbjct: 72 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTF 131
Query: 148 IALISACS--HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++ +CS G L+ ++ F Y +VD+Y + G + A+
Sbjct: 132 SSILKSCSTKSGKLIHTHVLKFGLGLDPYVAT-------GLVDIYAKGGDVVSAQKVFDR 184
Query: 206 MP 207
MP
Sbjct: 185 MP 186
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 176/296 (59%), Gaps = 5/296 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ + SW MI GYA+ G E AV++FQ M++ +PN T+ + LSAC+ + ALS
Sbjct: 374 MLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELN-VQPNPITISSTLSACAHLGALSL 432
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH IS + L ++ V A+I+MY KCG + A +F+ + K+++SW+ +ISG
Sbjct: 433 GKWVHRIIS-KEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYG 491
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL+L+ M+ + P TF+++I ACSHGGLVD+G +F+ M+ Y I P
Sbjct: 492 LHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGI 551
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H C+VD+ GRAG L EA I E P A VWGALL AC +H+N ++ Q+L
Sbjct: 552 EHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLF 611
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV--NPSIF 293
+ G + L+SN + + +A +R E + L K GC+ IE+ P +F
Sbjct: 612 ELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVF 667
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 4/225 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D+V++ +I GY+ G E +V +F+E+ + PN +TLV V+ S
Sbjct: 273 MDNPDLVAYNALISGYSVNGMVESSVELFKELTASGW-RPNSSTLVAVIPVYSPFGHELL 331
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+++ + L LV A+ +Y + D+ A +F+ + K M SW+ +ISG A
Sbjct: 332 ARCLHAFV-VKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYA 390
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ LF LM V P+ +T + +SAC+H G + G + + +S ++
Sbjct: 391 QNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISK-EKLELNV 449
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++DMY + G + EA + M + S W A+++ +H
Sbjct: 450 YVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS-WNAMISGYGLH 493
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D + W T++ G EA+ F M P+ TL + L A + S ++
Sbjct: 175 VPSPDTILWNTLLAGLPG----SEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAM 230
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y + L+ V ++++Y KCGD+ A +F+ + D+++++ +ISG +
Sbjct: 231 GRCVHGY-GVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYS 289
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIA-----------LISACSHGGLV----DQGLI 165
+NG +++LF + +G P+ T +A L++ C H +V D +
Sbjct: 290 VNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADAL 349
Query: 166 LFKAMSTVY 174
+ A++T+Y
Sbjct: 350 VSTALTTLY 358
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
+ V +A+ +Y K A +VF+ + D I W+T+++GL G +AL+ F
Sbjct: 146 AADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVR 201
Query: 135 MIING-VFPDDVTFIALISA-----------CSHGGLVDQGL 164
M+ G V PD T + + A C HG V GL
Sbjct: 202 MVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGL 243
>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
Length = 580
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/287 (40%), Positives = 182/287 (63%), Gaps = 5/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ VV+W MI GY + G A+ V++EM+ EA P+ AT V LSAC+ AL G+
Sbjct: 169 KSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEA-PDSATFVATLSACAQAGALDLGRQ 227
Query: 64 VHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V I S R +++V ++G A++NMY +CG V A + FNML +++++W+++I+G M+
Sbjct: 228 VDKLIVSERMEMNV--VLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMH 285
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +A++LF+LM G P+DVTF+A++SAC+H GLV +G F +M +VY +VP+ +H
Sbjct: 286 GHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEH 345
Query: 183 YACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y +VDMYGRAGLL++A FI + +P E VW A+L AC++H++ + + + L+
Sbjct: 346 YCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIAL 405
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ S L+SN +A + + K+RD + + LKK G S IE+
Sbjct: 406 EPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEI 452
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 123/246 (50%), Gaps = 20/246 (8%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSF 60
P D + ++ A RG A++ ++ + A P + +V AC+ +SA+
Sbjct: 66 PAPDSFLFCSLTRATARRGLPAAALAFYRCL--LAAALPFSSFAFTSVAKACADLSAIRA 123
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H++ + L + V +++ +Y KCG + +A ++F+ + K +++W+ +ISG
Sbjct: 124 GMGIHAH-AVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYE 182
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYE 175
NG +A++++ M + G PD TF+A +SAC+ G +D G LI+ + M
Sbjct: 183 QNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVV 242
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMF 231
+ A +V+MY R GL+ +A + M E W +++ +H + ++F
Sbjct: 243 L------GAALVNMYARCGLVNKAREWF-NMLQERNVVTWTSMIAGYGMHGHGGEAVKLF 295
Query: 232 DPIRQE 237
+ +RQ+
Sbjct: 296 NLMRQQ 301
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +R+VV+WT+MI GY G EAV +F M + + PN+ T V VLSAC+ +S
Sbjct: 267 LQERNVVTWTSMIAGYGMHGHGGEAVKLFNLM-RQQGPPPNDVTFVAVLSACAHAGLVSE 325
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
G+ + + + Y L ++++MY + G + A++ +
Sbjct: 326 GRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIH 367
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 172/286 (60%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSWT MI G + EA+ VF M+ + +P++ L VLSAC+S+ AL G++
Sbjct: 280 RDIVSWTVMISGLVQCKRPSEALEVFNAMQISG-VKPDKVVLSTVLSACASLGALESGRW 338
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH YI R + VG +V++MYVKCG + A+ +F + K++ SW+ +I+G A++G
Sbjct: 339 VHEYIE-RKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHG 397
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
GR+AL F M+ +G+ P++VTFI ++ AC H GLV +G LF+ M+ Y++ P HY
Sbjct: 398 RGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHY 457
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAGL++EA I+ MP+ W LL+AC+ H + I + +
Sbjct: 458 GCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHGRMDFSQQILMHIHELES 517
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A +DRW D K R + G++K+ G S IEVN
Sbjct: 518 SGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVN 563
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 135/239 (56%), Gaps = 20/239 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSWT ++ + G EA+ V EM+ T PNE TL +VL AC ++
Sbjct: 179 MAERDVVSWTALLSAFTRGGMFMEALGVLAEMDVT----PNEVTLASVLVACGNLGTARA 234
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + R + ++ +VGNA+++MYVKC + +A +VF+ML +D++SW+ +ISGL
Sbjct: 235 GKAVHGWY-FRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLV 293
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+AL++F+ M I+GV PD V ++SAC+ G ++ G V+E + +
Sbjct: 294 QCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESG-------RWVHEYIERK 346
Query: 181 Q-----HYAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
H VVDMY + G L+ A + +EMP++ S W AL+N +H R E D
Sbjct: 347 GIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLK-NVSSWNALINGFALHGRGREALD 404
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 38 AEPNEATLVNVLSACSSISA-LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
A P+ TL L AC+ + L G H+ ++ + V NA++ Y CG G
Sbjct: 113 ARPDGYTLPAALKACARLGGGLREGCQAHA-VAEKAGFLGRVPVQNALVTFYGACGQCGD 171
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A +VF+ +A +D++SW+ ++S G +AL + + M V P++VT +++ AC +
Sbjct: 172 ARKVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLVACGN 228
Query: 157 GGLVDQG 163
G G
Sbjct: 229 LGTARAG 235
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP ++V SW +I G+A G EA+ F M + PNE T + VL AC +
Sbjct: 378 MPLKNVSSWNALINGFALHGRGREALDCFDRMVASG-LHPNEVTFITVLGACCHSGLVQE 436
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-MISWSTVISGL 119
G+ + ++ Y LS ++++ + G + A V + + + +W T++S
Sbjct: 437 GRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVTLLSAC 496
Query: 120 AMNG 123
+G
Sbjct: 497 QAHG 500
>gi|222617104|gb|EEE53236.1| hypothetical protein OsJ_36137 [Oryza sativa Japonica Group]
Length = 542
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V SW TMI +E G + V VF M T EP+ AT+ ++SAC+ + +L+
Sbjct: 225 MTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATG-FEPDAATMAVLMSACAQLGSLTI 283
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VH + + + ++ V N++I+MY KCG + A +F KD +S++ +I A
Sbjct: 284 AGQVHGLLQ-KSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFA 342
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R AL LF+ M+ +G+ PD VTF+ ++SAC+H GLV+ G F+ M T Y +
Sbjct: 343 QHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSP 402
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYACVVD+YGRAGL+EEA F++ MP++ VWGALLNACR H + ++ + +EL+
Sbjct: 403 DHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAGVWGALLNACRKHCHVDVGEIAAKELIR 462
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+ NT A +W+ ++ +RR + K GCSW+EV+
Sbjct: 463 IEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTAGCSWVEVD 511
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 35/166 (21%)
Query: 73 DLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG-------- 123
++ V N+V GN ++ V+ GD+G A +VF+ +A +D ISW+T++SG G
Sbjct: 162 EMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYLHLGDTATVREL 221
Query: 124 ------------------CGRQA-----LQLFSLMIINGVFPDDVTFIALISACSH-GGL 159
C + +++F+ M G PD T L+SAC+ G L
Sbjct: 222 FDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAVLMSACAQLGSL 281
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
G + + E+ Q+ ++DMY + G + +A+ E
Sbjct: 282 TIAGQVHGLLQKSCVEMNCHVQN--SLIDMYAKCGCISQAQFLFTE 325
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 185/293 (63%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+W +MI G+A G EA+++F+EM + EP+ T+V++LSA + + AL
Sbjct: 179 MKERDLVAWNSMINGFALNGRPNEALTLFREM-SVEGVEPDGFTVVSLLSASAELGALEL 237
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + LS ++ V N+++++Y KCG + A +VF+ ++ ++ +SW+++I GLA
Sbjct: 238 GRRVHVYL-LKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLA 296
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG G +AL+LF M G+ P ++TF+ ++ ACSH G++D+G F+ M I+P+
Sbjct: 297 VNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRI 356
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ RAGL+++A +I+ MP++ +W LL AC IH + + + R L+N
Sbjct: 357 EHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLN 416
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L+SN +A RW D IR + + G+KK G S +E+ ++
Sbjct: 417 LEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVY 469
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 112/215 (52%), Gaps = 4/215 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V +W T+I GYAE A +++M EP+ T +L A S + G+ +
Sbjct: 82 NVFTWNTIIRGYAESDNPSPAFLFYRQM-VVSCVEPDTHTYPFLLKAISKSLNVREGEAI 140
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS ++ R V N+++++Y CGD A +VF ++ +D+++W+++I+G A+NG
Sbjct: 141 HS-VTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGR 199
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL LF M + GV PD T ++L+SA + G ++ G + + V + +
Sbjct: 200 PNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV-GLSKNSHVTN 258
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y + G + EA+ EM E W +L+
Sbjct: 259 SLLDLYAKCGAIREAQRVFSEMS-ERNAVSWTSLI 292
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
Query: 47 NVLSACSSISALSFG-------QYVHSYISTRYDLSVSNL-VGNAVINMYVK-CGDVGIA 97
N L+ C IS L F + +H++ S R+ +S++N +G +I V + A
Sbjct: 15 NPLTKC--ISLLQFCASSKHKLKQIHAF-SIRHGVSLNNPDMGKHLIFTIVSLSAPMSYA 71
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
VF ++ ++ +W+T+I G A + A + M+++ V PD T+ L+ A S
Sbjct: 72 YNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKS 131
Query: 158 GLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
V +G + + +E + Q+ ++ +Y G E A + E+ E + W
Sbjct: 132 LNVREGEAIHSVTIRNGFESLVFVQN--SLLHIYAACGDTESAYK-VFELMKERDLVAWN 188
Query: 217 ALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD--RWEDANKIRDEIR 273
+++N ++ R +E R+ ++ +GV F ++S A A+ E ++ +
Sbjct: 189 SMINGFALNGRPNEALTLFRE--MSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLL 246
Query: 274 RMGLKKKT 281
++GL K +
Sbjct: 247 KVGLSKNS 254
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 173/286 (60%), Gaps = 2/286 (0%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+SWTT++ Y++ E+A+SVF +M + +PN+ T VL++C+S+ +L +GQ VHS
Sbjct: 434 ISWTTLVTAYSQSSEWEDALSVFSQMREMG-FQPNQVTFSGVLASCASLCSLEYGQQVHS 492
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
++ + + V + +I+MY KCG V AI+VF L D+ISW+ +ISG A +G +
Sbjct: 493 -LTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAK 551
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
AL+LF M + P+ TF+ L+ ACSHGGLVD+GL F M Y +VP+ +HYACV
Sbjct: 552 DALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACV 611
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
VD+ GR G L EA FI +MPIE + VW LL ACR+H N ++ Q++++
Sbjct: 612 VDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDF 671
Query: 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L+SNT+ A E +R+ ++ ++K+TG SWI + I
Sbjct: 672 AALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKI 717
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 112/227 (49%), Gaps = 19/227 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++ V SWT ++ G E GF + + F E+ + P+E L + AC + ++
Sbjct: 124 IPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGC-DIVPDEYALSAAIQACIGVDSIVV 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + TR S V +++ MY K G +G + +VFN L ++ +SW+ +ISG
Sbjct: 183 GEMVHAQVITR-GFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFV 241
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A F M+ + P+ FI++ A G V++G + + +EI Q+
Sbjct: 242 SNGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINR---IAFEIGMQS 298
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ ++DM+ + G + E+ WSV+ + + C ++
Sbjct: 299 NIHVGTALIDMFAKCGCVTES------------WSVFVSNFSGCGVN 333
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ R+ VSW MI G+ G EA + F M +E PN A ++V A + +
Sbjct: 225 LENRNQVSWNAMISGFVSNGLYAEAYNSFLRM-LGEEIRPNVACFISVSKAIGQLGDVEK 283
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISG 118
G+Y++ I+ + + VG A+I+M+ KCG V + VF N + W+ +ISG
Sbjct: 284 GRYINR-IAFEIGMQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISG 342
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
++G G +A+ LF M N + D T+ + +++
Sbjct: 343 FTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNS 377
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+ W MI G+ G EEA+ +F M + + + T + L++ + + +L + + +H
Sbjct: 334 LPWNAMISGFTISGHGEEAMLLFLRMCQNN-IKRDVYTYCSTLNSIADMRSLEYVKQLHG 392
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
I + VS + NA+++ Y KCG++ ++F+ + ISW+T+++ + +
Sbjct: 393 MIWKSGSIGVS--LCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWE 450
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYA 184
AL +FS M G P+ VTF ++++C+ ++ G V+ + +T
Sbjct: 451 DALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYG-------QQVHSLTCKTGFARDK 503
Query: 185 CV----VDMYGRAGLLEEA 199
CV +DMY + G + +A
Sbjct: 504 CVESVLIDMYAKCGSVRDA 522
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 4/149 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV+SWT MI GYA+ G ++A+ +F++ME PN AT + +L ACS + G
Sbjct: 533 DVISWTAMISGYAQHGMAKDALELFRKMELVL-PNPNSATFLCLLFACSHGGLVDEGLRY 591
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGLAMNG 123
+ RY L V+++ + G + A + + M D WST++ ++
Sbjct: 592 FHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVH- 650
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALIS 152
G L + + PDD + L+S
Sbjct: 651 -GNIQLAKIAAQKVLSYNPDDFAALVLLS 678
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGDVGIAI 98
+E +L+ ++ + L + +H ++ ++ L +L + N ++ Y KC D G A
Sbjct: 60 SETSLIELIRESADERCLKKAKSIHGFV-IKFQLIEKSLTVMLNQLVIAYSKCSDFGSAR 118
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
QVF+ + K + SW+ ++ G NG R + F ++ + PD+ A I AC
Sbjct: 119 QVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQAC 174
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 176/287 (61%), Gaps = 4/287 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWT M+ GYA+ EA+ +F+EM P+E +V+V+SAC+S+ L
Sbjct: 191 MPERDVVSWTVMVSGYAQAKRSREALELFREMRDVG-VRPDEVAMVSVISACTSLGDLET 249
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH YI + VS + NA+I+MY KCG + +A QVFN + K +I+W+++IS
Sbjct: 250 GFEVHRYIDENGFGWMVS--LCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 307
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G A ++F+LM+ +G+ PD VTF+AL++A +H G VD G LF++M Y +
Sbjct: 308 ANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 367
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM GRAG LEEA I M + VWGALL ACRI+ + EM + + ++L+
Sbjct: 368 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 427
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
K G + L+ + + A R +A ++R + G KK GCSW+
Sbjct: 428 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 474
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+V+ G++ +A QVF + +D++SW+ ++SG A R+AL+LF M GV PD+V
Sbjct: 175 HVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAM 234
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIRE 205
+++ISAC+ G ++ G F+ + E C ++DMY + G ++ A
Sbjct: 235 VSVISACTSLGDLETG---FEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNN 291
Query: 206 MPIEAEWSVWGALLNACRIHRNDE 229
M W ++++AC H N E
Sbjct: 292 ME-RKSLITWNSMISACANHGNAE 314
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 178/285 (62%), Gaps = 3/285 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VVSW +I G+A +G E + +F +M + + EP T +V +AC+S +L G++
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFLQMLR-QGFEPTHFTYSSVFTACASSGSLEQGKW 328
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH+++ ++ +GN +I+MY K G + A +VF L +D++SW+++ISG A +G
Sbjct: 329 VHAHVIKSGGQPIA-YIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHG 387
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +ALQLF M+ V P+++TF+++++ACSH GL+D+G F+ M ++I Q H+
Sbjct: 388 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHH 446
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
VVD+ GRAG L EA FI EMPI+ +VWGALL +CR+H+N ++ +++
Sbjct: 447 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDP 506
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G L+SN +A A R DA K+R ++ G+KK+ CSW+E+
Sbjct: 507 HDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEI 551
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 128/229 (55%), Gaps = 12/229 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+VSWT +I GY++ G EA+++F +M +PNE TL ++L A + +
Sbjct: 166 MPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHH 224
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++ S +Y ++ VG+++++MY + + A +FN LA K+++SW+ +I+G A
Sbjct: 225 GRQLHAF-SLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHA 283
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----LILFKAMSTVYEI 176
G G ++LF M+ G P T+ ++ +AC+ G ++QG + K+
Sbjct: 284 RKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAY 343
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ T ++DMY ++G +++A+ R + ++ + W ++++ H
Sbjct: 344 IGNT-----LIDMYAKSGSIKDAKKVFRRL-VKQDIVSWNSIISGYAQH 386
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 5/182 (2%)
Query: 39 EPNEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIA 97
EP +L+ C+ + L G+ +H++I S+ ++ + L N ++NMY KCG + A
Sbjct: 102 EPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLL--NFILNMYAKCGSLEEA 159
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+F+ + KDM+SW+ +ISG + +G +AL LF M+ G P++ T +L+ A G
Sbjct: 160 QDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTG 219
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G L A S Y + ++DMY R + EA+ + + S W A
Sbjct: 220 PSDHHGRQL-HAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVS-WNA 277
Query: 218 LL 219
L+
Sbjct: 278 LI 279
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 104/241 (43%), Gaps = 44/241 (18%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K+D+VSW ++I GYA+ G EA+ +F++M K K +PNE T ++VL+ACS L GQ
Sbjct: 370 KQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAK-VQPNEITFLSVLTACSHSGLLDEGQ 428
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
Y Y + V + V TV+ L
Sbjct: 429 Y---YFELMKKHKIEAQVAHHV-----------------------------TVVDLLGRA 456
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQ 181
G +A + M I P + AL+ +C +D G+ A ++E+ P +
Sbjct: 457 GRLNEANKFIEEMPIK---PTAAVWGALLGSCRMHKNMDLGVY---AAEQIFELDPHDSG 510
Query: 182 HYACVVDMYGRAGLLEEA---EAFIREMPIEAEWSV-WGALLNACRIHRNDEMFDPIRQE 237
+ + ++Y AG L +A ++E ++ E + W + N + ++ P+R+E
Sbjct: 511 PHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREE 570
Query: 238 L 238
+
Sbjct: 571 I 571
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 180/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ V+W+ MIGGY G +AV +F+ M+ + P+E T++ VL+A + + AL
Sbjct: 199 MPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSG-VRPDEVTVIGVLAAAADLGALEL 257
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V ++ R + S + NA+I+ KCGDV A+ VF + + ++SW++VI LA
Sbjct: 258 TRWVGRFVE-REGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALA 316
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A+ +F M GV PDDV FI +++ACSH G+VD+G F +M T Y I P+
Sbjct: 317 MEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKI 376
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM+GRAG++E+ F+R MP++ +W L+ ACR H E+ + I + L+N
Sbjct: 377 EHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLN 436
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN +A RW++ ++IR E+ + G+KK GCS +E++
Sbjct: 437 EFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELD 485
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Query: 40 PNEATLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVINMY--VKCGDVGI 96
PN+ T +L +C+++ + G H+ + ++ + + V N +I+MY G +G
Sbjct: 133 PNKFTFPFLLKSCAALPGSPDVGLQAHA-AALKFGFAADHYVSNTLIHMYSCFGAGFLGD 191
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
A VF + + ++WS +I G G A+ LF M ++GV PD+VT I +
Sbjct: 192 ARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGV 245
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 185/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D ++ ++ G+A+ G EEA+ VF M+++ + N T V+ LSA ++++ +
Sbjct: 507 MELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQ 565
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + S VGNA+I++Y KCG A F+ ++ ++ +SW+T+I+ +
Sbjct: 566 GKQIHARV-IKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCS 624
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL LF M G+ P+DVTFI +++ACSH GLV++GL FK+MS Y I P+
Sbjct: 625 QHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRP 684
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYACV+D++GRAG L+ A+ FI EMPI A+ VW LL+AC++H+N E+ + + L+
Sbjct: 685 DHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLE 744
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ ++ L+SN +A ++W + +++R +R G++K+ G SWIEV
Sbjct: 745 LEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVK 793
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 143/261 (54%), Gaps = 13/261 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSWT+MI GY + C++A++ F+EM+K P+ L + +S C+ I+A+
Sbjct: 406 LKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG-IWPDNIGLASAISGCAGINAMRQ 464
Query: 61 GQYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +H+ I + Y VS + NA++N+Y +CG + A F + KD I+ + ++SG
Sbjct: 465 GLQIHARIYVSGYSGDVS--IWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGF 522
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVP 178
A +G +AL++F M +GV + TF++ +SA ++ + QG I + + T +
Sbjct: 523 AQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSF-- 580
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
+T+ ++ +YG+ G E+A+ EM E S W ++ +C H ++FD +
Sbjct: 581 ETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVS-WNTIITSCSQHGRGLEALDLFDQM 639
Query: 235 RQELVNKKGVS-VGTFALMSN 254
++E + V+ +G A S+
Sbjct: 640 KKEGIKPNDVTFIGVLAACSH 660
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 115/203 (56%), Gaps = 11/203 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD VSW M+ GYA+ G EEA+ ++++M + P L +VLS+C+ +
Sbjct: 103 LSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQ 161
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ ++ VGNAVI +Y++CG +A +VF + ++D ++++T+ISG A
Sbjct: 162 GRLIHAQ-GYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHA 220
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL----ILFKAMSTVYEI 176
G G AL++F M +G+ PD VT +L++AC+ G + +G LFKA + I
Sbjct: 221 QCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI 280
Query: 177 VPQTQHYACVVDMYGRAGLLEEA 199
+ + ++D+Y + G +E A
Sbjct: 281 MEGS-----LLDLYVKCGDVETA 298
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 117/219 (53%), Gaps = 4/219 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD V++ T+I G+A+ G E A+ +F+EM+ + P+ T+ ++L+AC+S+ L
Sbjct: 204 MPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSG-LSPDCVTISSLLAACASLGDLQK 262
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY+ + +S ++ +++++YVKCGDV A+ +FN +++ W+ ++
Sbjct: 263 GTQLHSYL-FKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ +LF M G+ P+ T+ ++ C+ +D G + ++S
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQI-HSLSVKTGFESDM 380
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++DMY + G LE+A + EM E + W +++
Sbjct: 381 YVSGVLIDMYSKYGWLEKARRVL-EMLKEKDVVSWTSMI 418
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 101/207 (48%), Gaps = 3/207 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ +VV W M+ + + ++ +F +M+ PN+ T +L C+ + G+
Sbjct: 307 RTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGE 365
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS +S + V +I+MY K G + A +V ML KD++SW+++I+G +
Sbjct: 366 QIHS-LSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQH 424
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
C + AL F M G++PD++ + IS C+ + QGL + A V
Sbjct: 425 ECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQI-HARIYVSGYSGDVSI 483
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIE 209
+ +V++Y R G + EA + EM ++
Sbjct: 484 WNALVNLYARCGRIREAFSSFEEMELK 510
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ TR L +VGN +I++Y K G V A +VF L+ +D +SW ++SG A NG
Sbjct: 64 IHAKAVTR-GLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL L+ M GV P +++S+C+ L QG L A + +
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGR-LIHAQGYKHGFCSEIFVG 181
Query: 184 ACVVDMYGRAGLLEEAEAFIREMP 207
V+ +Y R G AE +MP
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMP 205
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 173/288 (60%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW MI GY++ EA+ +F M P E TLV VLSA + L
Sbjct: 345 MPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEM 404
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H + + VS ++ NAV++MY KCG + A ++F+ + K+++SW+++IS A
Sbjct: 405 GQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYA 464
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++AL LF MI +G+ PD +TFI ++SACS+GG V +G F++M + + P+
Sbjct: 465 SYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKR 524
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R GLL+EA I MP+EA WGALL+ACR H N EM ++L+
Sbjct: 525 EHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLE 584
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G ++L++N A +W+D +R +R G+KK G S IE+
Sbjct: 585 LDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEI 632
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 112/194 (57%), Gaps = 6/194 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WTTMI GYA + +EA+++F M + + +PNE T++ +LSACS G+
Sbjct: 216 KDVVTWTTMINGYARNNWLDEAIALFNSM-LSSDVKPNEVTMIALLSACSQKGDSEMGKT 274
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H +I R D++ S + NA+++MYVKCG + A ++FN + +D+ SW+++++G A NG
Sbjct: 275 LHEHI-RRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNG 333
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
A +LF M + V++ A+I+ S + L LF M V +VP
Sbjct: 334 DLGSARKLFDEMPERNI----VSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTL 389
Query: 184 ACVVDMYGRAGLLE 197
CV+ G+ G LE
Sbjct: 390 VCVLSASGQLGCLE 403
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 6/214 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W TMI GY + S F++M + + AE + + V L AC + G VHS I
Sbjct: 120 WNTMIKGYCKANHPSMGFSFFRQMIRNR-AEFDSGSFVFALKACGQFAEKIVGMAVHSVI 178
Query: 69 STR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
R +D + V N +I YV+ G +G A Q+F+ + KD+++W+T+I+G A N +
Sbjct: 179 WKRGFDSDL--FVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDE 236
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
A+ LF+ M+ + V P++VT IAL+SACS G + G L + + +I ++
Sbjct: 237 AIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRR-KDITCSLNLLNAML 295
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
DMY + G L A M +S W +LLN
Sbjct: 296 DMYVKCGCLTTAREIFNNMERRDVFS-WTSLLNG 328
>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/292 (38%), Positives = 177/292 (60%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK+DVV+WT MI G + E A+++F E+ +P+ T+ +V++AC+S++ +
Sbjct: 385 VPKQDVVTWTAMISGCVQNELFERALALFHELLGVG-LKPDPFTISSVMNACASLAVVRT 443
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + + +T+ +GN+ I+MY + G+V AIQ F + D++SWS +IS A
Sbjct: 444 GEQMQCF-ATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHA 502
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+GC RQALQ F+ M+ V P+++TF+ +++ACSHGGLVD+GL ++ M Y + P
Sbjct: 503 QHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTV 562
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H CVVD+ GRAG L +AEAFIR+ E VW +LL +CRIHR+ E + ++
Sbjct: 563 KHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIME 622
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ S G + + N + A +KIRD ++ G+KK+ G SWIE+ I
Sbjct: 623 LQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRSGI 674
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 109/213 (51%), Gaps = 14/213 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VS+ +I Y+ G EE++ F + E + + T L+ACS L
Sbjct: 73 MPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKE 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ ++ L+ V N++++MY +CGD+G A +VF++ +D +SW++++SG
Sbjct: 133 GKVVHA-LAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYL 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-----GLVD--QGLILFKAMSTV 173
G + L++F+LM + + ++I CS G G+ + G ++ + T
Sbjct: 192 RVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTD 251
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ + +VDMY + G L EA A + +
Sbjct: 252 LFLA------SAMVDMYAKRGALSEAVALFKSV 278
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 110/223 (49%), Gaps = 10/223 (4%)
Query: 5 DVVSWTTMIGGYA------ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
+VV + MI G + EA+S++ E++ ++ EP E T +V+ AC+ +
Sbjct: 282 NVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQ-SRGMEPTEFTFSSVIRACNLAGDI 340
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
FG+ +H + ++ + +G+A+I++Y + + F + +D+++W+ +ISG
Sbjct: 341 EFGKQIHGQV-LKHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISG 399
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
N +AL LF ++ G+ PD T ++++AC+ +V G + + +T
Sbjct: 400 CVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGEQM-QCFATKSGFDR 458
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
T + MY R+G +E A +EM S W A++++
Sbjct: 459 FTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVS-WSAIISS 500
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 110/230 (47%), Gaps = 16/230 (6%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS--SISALSF 60
+RD VSW +++ GY G EE + VF M + N L +V+ CS S
Sbjct: 177 ERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMG-LNSFALGSVIKCCSGGDGSVRGI 235
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH + + L + +A+++MY K G + A+ +F + +++ ++ +I+GL
Sbjct: 236 AEAVHGCV-VKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLC 294
Query: 121 MNGCG------RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+ R+AL L+S + G+ P + TF ++I AC+ G ++ G + V
Sbjct: 295 RDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGK---QIHGQVL 351
Query: 175 EIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ Q + + ++D+Y + +E+ R +P + + W A+++ C
Sbjct: 352 KHCFQGDDFIGSALIDLYFNSACMEDGFRCFRSVP-KQDVVTWTAMISGC 400
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 180/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I YA+ G E++ +F M K E N TL VL AC+ +
Sbjct: 322 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 381
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + L + VG ++I+MY KCG V +A + F+ + K++ SWS +++G
Sbjct: 382 GKCIHDQV-IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++AL++F M + GV P+ +TF+++++ACSH GL+++G FKAMS +++ P
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA I+ M + ++ VWGALL ACR+H+N ++ + ++L
Sbjct: 501 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A RWED ++R ++ GL K G S +++ +
Sbjct: 561 LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRV 612
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 125/238 (52%), Gaps = 21/238 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-------EKTKEAEPNEATLVNVLSACS 53
+ R++VSWT+MI GY + A+ +F+E E E + +V+VLSACS
Sbjct: 213 ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272
Query: 54 SISALSFGQYVHSYISTRY---DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
+S S + VH ++ R DL V N + +A Y KCG++G++ +VF+ +A +D+I
Sbjct: 273 RVSEKSITEGVHGFLIKRGFEGDLGVENTLMDA----YAKCGELGVSRRVFDGMAERDVI 328
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKA 169
SW+++I+ A NG +++++F M+ +G + + VT A++ AC+H G G +
Sbjct: 329 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIH-- 386
Query: 170 MSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V ++ ++ + ++DMY + G +E A M E W A++ +H
Sbjct: 387 -DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMH 442
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 21/181 (11%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V SW ++I A G EA+ F M K +PN +T + +CS++ L G+
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS-LKPNRSTFPCAIKSCSALLDLHSGR 172
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H + + V +A+++MY KCG++ A +F+ +++++++SW+++I+G N
Sbjct: 173 QAHQQ-ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231
Query: 123 GCGRQALQLFSLMIIN--------GVFPDDVTFIALISACS-----------HGGLVDQG 163
+AL LF ++ V D + ++++SACS HG L+ +G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291
Query: 164 L 164
Sbjct: 292 F 292
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 100 VFNMLAYK-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+FN K ++ SW++VI+ LA +G +AL+ FS M + P+ TF I +CS
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCS--A 164
Query: 159 LVD-QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
L+D + ++ P + +VDMY + G L +A E+
Sbjct: 165 LLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 213
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 179/294 (60%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ V+W +I GY +A+ F+ M A+P+E T+V VLSACS + A +
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGM-LADGAQPSERTVVVVLSACSHLGAFNQ 208
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H +I R L+V VG A+I+MY KCG V +VF + K++ +W+ +ISG
Sbjct: 209 GKWIHEFIYHNRLRLNV--FVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AMNG G ALQ FS M++ PD+VTF+ ++ AC H GLV +G F +M + + P+
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLLEEA I+ M IE + +W ALL ACR+H N ++ + I + L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+SN ++ RW + K+R + G++K GCS IE+N ++
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVY 440
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
+MI Y + ++ +F M K P+ +T VL A + + G+ +H I
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKFS-ILPDSSTFPAVLKATAQLCDTGVGKMIHG-IV 115
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
+ A++++Y C + A Q+F+ + ++ ++W+ +I+G N +A+
Sbjct: 116 IQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ 183
F M+ +G P + T + ++SACSH G +QG ++E + +
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-------KWIHEFIYHNRLRLNVFVG 228
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G + E E E+ E W L++
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISG 265
>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Vitis vinifera]
Length = 993
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 178/289 (61%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSWT+MI Y G EA+ +F M++T EP+ +LV++LSA +S+SAL G+
Sbjct: 583 KDVVSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKGKE 641
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ R + + + +++MY +CG + + VFN + KD++ W+++I+ M+G
Sbjct: 642 IHGFL-IRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 700
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CGR A+ LF M + PD + F+A++ ACSH GL+++G ++M Y++ P +HY
Sbjct: 701 CGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHY 760
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRA LEEA F++ M +E VW ALL AC+IH N E+ + Q+L+
Sbjct: 761 VCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDP 820
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A RW+D ++R ++ GLKK GCSWIEV +
Sbjct: 821 ENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKV 869
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 138/240 (57%), Gaps = 35/240 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSWTT+I G+A+ G A+ +F+E++ + + + + ++L ACS + +S
Sbjct: 480 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISS 538
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +HSYI + +S+LV N ++++Y +CG+V A ++F ++ +KD++SW+++IS
Sbjct: 539 VKEIHSYIIRK---GLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 595
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFK 168
NG +AL+LF LM GV PD ++ ++++SA + HG L+ +G +L
Sbjct: 596 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 655
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE---AFIREMPIEAEWSVWGALLNACRIH 225
++++ +VDMY R G LE++ FIR + +W +++NA +H
Sbjct: 656 SLAST------------LVDMYARCGTLEKSRNVFNFIR----NKDLVLWTSMINAYGMH 699
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 6/209 (2%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K DVVSW +MI Y+ G EA+ +F EM+K A PN T V L AC S +
Sbjct: 277 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAALQACEDSSFIK 335
Query: 60 FGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G ++H+ + + Y ++V V NA+I MY + G +G A +F + D ISW++++SG
Sbjct: 336 QGMFIHATVLKSSYYINV--FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSG 393
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +ALQ + M G PD V I++I+A + G G+ + A + +
Sbjct: 394 FVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI-HAYAMKNGLDS 452
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMP 207
Q +VDMY + ++ + +MP
Sbjct: 453 DLQVGNSLVDMYAKFCSMKYMDCIFDKMP 481
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + + +W MIG Y G ++ +++EM + + T +L AC +
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRC 234
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G VH +S+ V N+++ MY KC D+ A Q+F+ + K D++SW+++IS
Sbjct: 235 GAEVHGLAIKEGYVSIV-FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 293
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG +AL+LF M + P+ TF+A + AC + QG+ ++ V +
Sbjct: 294 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF-------IHATVLK 346
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 221
+ +Y V + MY R G + EA M +W W ++L+
Sbjct: 347 SSYYINVFVANALIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSG 393
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 131/252 (51%), Gaps = 21/252 (8%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D +SW +M+ G+ + G EA+ + EM + +P+ ++++++A + G +
Sbjct: 383 DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLNGMQI 441
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+Y + + L VGN++++MY K + +F+ + KD++SW+T+I+G A NG
Sbjct: 442 HAY-AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 500
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQ 179
+AL+LF + + G+ D + +++ ACS L+ I+ K +S ++V Q
Sbjct: 501 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQ 557
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR---ND--EMFDPI 234
+VD+YG G ++ A A + E+ + W +++ +C +H N+ E+F +
Sbjct: 558 NG----IVDVYGECGNVDYA-ARMFELIEFKDVVSWTSMI-SCYVHNGLANEALELFHLM 611
Query: 235 RQELVNKKGVSV 246
++ V +S+
Sbjct: 612 KETGVEPDSISL 623
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 27/188 (14%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
+VL C S ALS GQ VH+++ T L S + ++ MY KCG + A ++F+ + +
Sbjct: 119 SVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPH 178
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----------- 155
K + +W+ +I NG +L+L+ M ++G+ D TF ++ AC
Sbjct: 179 KTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEV 238
Query: 156 HGGLVDQGL--ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
HG + +G I+F A S +V MY + L A MP + +
Sbjct: 239 HGLAIKEGYVSIVFVANS--------------IVGMYTKCNDLNGARQLFDRMPEKEDVV 284
Query: 214 VWGALLNA 221
W ++++A
Sbjct: 285 SWNSMISA 292
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 180/287 (62%), Gaps = 5/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VV+W MI GY + G E+ + V++EM K +A P+ T V LSAC+ AL G+
Sbjct: 169 KNVVAWNAMISGYEQNGLAEQGIEVYKEM-KVAKAVPDSMTFVATLSACAQAGALDLGRE 227
Query: 64 VHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V I S R D+SV +G+A++NMY +CG V A Q F++L +++++W+++I+G M+
Sbjct: 228 VERRIVSERMDISV--FLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMH 285
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +A++L+ LM G P+DVTF+A++SAC+H GL+ +G F M VY + P+ +H
Sbjct: 286 GHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLITEGRDAFACMKRVYGLAPRVEH 345
Query: 183 YACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y +VDMYGRAG LEEA FIR+ MP + VW A+L AC++H+N + + + L+
Sbjct: 346 YCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAILGACKMHKNFSLGVEVAERLIRL 405
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + L+SN +A + + K+R+ + + LKK+ G S IE+
Sbjct: 406 EPENPSYHVLLSNIYALSGKMYHVEKVRNTMIKRRLKKQIGYSLIEL 452
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 85/158 (53%), Gaps = 12/158 (7%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
V AC+ +SAL G VH++ S V A++ +Y KCG + +A ++F+ + K
Sbjct: 111 VAKACADLSALRTGMTVHAH-SILLGFGSDRFVLTALVVLYSKCGRLPVARKLFDAIRDK 169
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
++++W+ +ISG NG Q ++++ M + PD +TF+A +SAC+ G +D G +
Sbjct: 170 NVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVE 229
Query: 168 KAMSTVYEIVPQTQHY-----ACVVDMYGRAGLLEEAE 200
+ IV + + +V+MY R G++++A
Sbjct: 230 R------RIVSERMDISVFLGSALVNMYARCGVVDKAR 261
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +R+VV+WT+MI GY G EA+ ++ M + K PN+ T V VLSAC+ ++
Sbjct: 267 LQERNVVTWTSMIAGYGMHGHGHEAIKLYHLM-RCKGPPPNDVTFVAVLSACAHAGLITE 325
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
G+ + + Y L+ ++++MY + G + A+Q
Sbjct: 326 GRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQ 364
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 180/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I YA+ G E++ +F M K E N TL VL AC+ +
Sbjct: 168 MAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRL 227
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + L + VG ++I+MY KCG V +A + F+ + K++ SWS +++G
Sbjct: 228 GKCIHDQV-IKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 286
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G ++AL++F M + GV P+ +TF+++++ACSH GL+++G FKAMS +++ P
Sbjct: 287 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 346
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EA I+ M + ++ VWGALL ACR+H+N ++ + ++L
Sbjct: 347 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 406
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN +A A RWED ++R ++ GL K G S +++ +
Sbjct: 407 LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRV 458
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 115/257 (44%), Gaps = 40/257 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +V SW ++I A G EA+ F M K +PN +T + +CS++ L G+
Sbjct: 38 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKL-SLKPNRSTFPCAIKSCSALLDLHSGR 96
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCG------------------------------ 92
H + + V +A+++MY KCG
Sbjct: 97 QAHQQ-ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155
Query: 93 -DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIAL 150
D A++VF+ +A +D+ISW+++I+ A NG +++++F M+ +G + + VT A+
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEAEAFIREMPI 208
+ AC+H G G + V ++ ++ + ++DMY + G +E A M
Sbjct: 216 LLACAHSGSQRLGKCIH---DQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR- 271
Query: 209 EAEWSVWGALLNACRIH 225
E W A++ +H
Sbjct: 272 EKNVKSWSAMVAGYGMH 288
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R VSWT +I GY ++G + +F +M + +++T VL A +S ++L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKM-RGSNLRADQSTFATVLKASASFASLLL 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++I +L + G+ +++MY KCG + A+QVF + ++ +SW+ +IS A
Sbjct: 471 GKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G A+ F+ MI +G+ PD V+ + +++ACSH G V+QG F+AMS +Y I P+
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR G EAE + EMP E + +W ++LNACRIH+N + + ++L +
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649
Query: 241 -KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+K + MSN +A A WE ++ +R G+KK SW+EVN I
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D VS+ +I Y++ E ++ F+EM+ N +LS +++S+L
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQM 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H S+ + VGN++++MY KC A +F L + +SW+ +ISG
Sbjct: 370 GRQLHCQALLATADSILH-VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYV 428
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG--LVDQGLILFKAMSTVYEIVP 178
G L+LF+ M + + D TF ++ A + L+ + L F S E V
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +VDMY + G +++A EMP S W AL++A
Sbjct: 489 SG---SGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISA 527
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 7/211 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACS-SISAL 58
MP R VV+WT ++G YA +EA +F++M ++ P+ T +L C+ ++
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164
Query: 59 SFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ GQ VH++ + +D + V N ++ Y + + +A +F + KD ++++T+I+
Sbjct: 165 AVGQ-VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEI 176
G +G +++ LF M +G P D TF ++ A GL D L A+S
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV--GLHDFALGQQLHALSVTTGF 281
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++D Y + + E EMP
Sbjct: 282 SRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 6/221 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D V++ T+I GY + G E++ +F +M ++ +P++ T VL A + +
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVVGLHDFAL 268
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ +S S VGN +++ Y K V +F+ + D +S++ VIS +
Sbjct: 269 GQQLHA-LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYS 327
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQ 179
+L F M G + F ++S ++ + G L +A+ + +
Sbjct: 328 QADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ +VDMY + + EEAE + +P S W AL++
Sbjct: 388 VGN--SLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALIS 425
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-- 139
N +I+ +VK GDV A +F+ + + +++W+ ++ A N +A +LF M +
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 140 VFPDDVTFIALISACS 155
PD VTF L+ C+
Sbjct: 143 TLPDHVTFTTLLPGCN 158
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 171/274 (62%), Gaps = 2/274 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
M +DVV+WT M+ GY + G V VFQEM +EA PN AT+V+V SAC+ + +L
Sbjct: 181 MQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLE 240
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + +H+Y+ + L +V N++I+MY KCG + +A +F ++ KD+ SW+ +ISGL
Sbjct: 241 YAKGLHAYVE-KVGLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGL 299
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G++A+ LF M GV PD TF+ ++SACSH GLVD+G+ +F +M Y++ P
Sbjct: 300 ASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPD 359
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD++ RAGL+ FI MP E ++ GALL+AC I+ ++ + + + +
Sbjct: 360 IKHYGCMVDLFSRAGLIARGYQFIESMPFEPNLAILGALLSACSINNELDIGELVIKRIE 419
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273
+ + G L+SN +A + W + + +R +IR
Sbjct: 420 SVRSDKGGAGVLLSNIYANQNLWHEVDSLRRKIR 453
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 13/206 (6%)
Query: 25 AVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84
A+ +F +M + + + TL ++ ACSS + +H S R S A+
Sbjct: 105 ALQLFDQM-RHRGVTTDRYTLPFLIHACSS-GDRPLCESLHGQ-SLRLGYSSVLFTQTAL 161
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM--IINGVFP 142
+N Y C A +VF+ + KD+++W+ ++SG +G + +++F M V P
Sbjct: 162 MNAYFACRFEVAARRVFDEMQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRP 221
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEA 199
+ T +++ SAC+ G ++ L + V E++ + ++DMYG+ G +E A
Sbjct: 222 NVATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNS----LIDMYGKCGSIELA 277
Query: 200 EAFIREMPIEAEWSVWGALLNACRIH 225
MP + + W A+++ H
Sbjct: 278 RGLFGLMP-QKDLHSWTAMISGLASH 302
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 176/297 (59%), Gaps = 6/297 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V++W +I YA+ G EEA+ +F + K + P T NVL+AC +++ L
Sbjct: 1086 MVEKNVIAWNVLIAAYAQNGEEEEALRLFVRL-KRESVWPTHYTYGNVLNACGNVADLQL 1144
Query: 61 GQYVHSYI---STRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV 115
GQ H ++ R+D + VGN++++MY+K G + +VF +A +D +SW+ +
Sbjct: 1145 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 1204
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175
I G A NG + AL LF M+ + PD VT I ++SAC H GLV++G F++M+ +
Sbjct: 1205 IVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHG 1264
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
I+P HY C++D+ GRAG L+E E I+EM +E + +W +LL +CR+H+N EM +
Sbjct: 1265 IIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAA 1324
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+L + G + L+SN +A +W D ++R ++ G+ K+ GCSWIE+ +
Sbjct: 1325 GKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKV 1381
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD SW ++I GY E A+ +M+ E PN++T + L+AC++I L G
Sbjct: 449 ERDSYSWNSLISGYERHSMSEAALYALTKMQS--EVTPNQSTFSSALAACANIFLLKQGM 506
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+Y+ R + +++ + +I+MY KC +I++F +D+I W+++I G A +
Sbjct: 507 QIHAYM-IRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYS 565
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G L LF M G+ D VTF+ + +C G V G F M I+P+ +H
Sbjct: 566 GKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPRIEH 624
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
Y C++++ G+ G + E E F+ MP E ++W + + CR + N ++
Sbjct: 625 YECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKL 672
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 42/257 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW ++I Y + G EA+ +F M K P+E TL +V+SAC+ ++A
Sbjct: 953 MPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFV-PDEVTLASVMSACAGLAADRE 1011
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---------------------------- 92
G+ VH+ + ++ NA+++MY KCG
Sbjct: 1012 GRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYA 1071
Query: 93 ---DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+V A VF+ + K++I+W+ +I+ A NG +AL+LF + V+P T+
Sbjct: 1072 RSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGN 1131
Query: 150 LISACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAF 202
+++AC G + D Q + ++ P++ + +VDMY + G +++
Sbjct: 1132 VLNAC--GNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189
Query: 203 IREMPIEAEWSVWGALL 219
M S W A++
Sbjct: 1190 FERMAARDNVS-WNAMI 1205
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 6/240 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD SW +I + G EA+S+F M P +AT+ +VLS C+ L
Sbjct: 111 MPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLG-IRPKDATMASVLSCCAECLDLCG 169
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H +I+ R D + ++G A++++Y C + A + F+ + + ISW+ ++
Sbjct: 170 ARQLHGHIAKR-DFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYH 228
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ G G A+ +F M+ GV P T + AC +++G + A +
Sbjct: 229 LAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCI-HAFVLRHGYEHHV 287
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE---AEWSVWGALLNACRIHRNDEMFDPIRQE 237
+ VVDMY + G ++ A++ P++ S+ L + RI +F+ +++
Sbjct: 288 HVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKER 347
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 128/252 (50%), Gaps = 13/252 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R++VSW M+ GY A+ +FQ+M + + E + TL +VLSAC+ I +
Sbjct: 344 MKERNLVSWNAMLTGYIRSMDLTGALLLFQQM-RQETREFDAITLGSVLSACTGILDIGK 402
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA--IQVFNMLAYKDMISWSTVISG 118
G+ VH++ + + S ++ NA++ MY KCG + A + +F M + +D SW+++ISG
Sbjct: 403 GEEVHAF-AIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIV 177
+ AL + M + V P+ TF + ++AC++ L+ QG+ + M YEI
Sbjct: 462 YERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEID 520
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDP 233
+ + ++DMY + + + P + +W +++ C E +FD
Sbjct: 521 DILR--SVLIDMYCKCRQFDYSIRIFEARP-SRDVILWNSMIFGCAYSGKGEYGLDLFDE 577
Query: 234 IRQELVNKKGVS 245
++++ + V+
Sbjct: 578 MQKQGIKADSVT 589
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 34/252 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D S+ +I A+ +A+ M + N + + LSAC++
Sbjct: 852 IPDPDQCSYNAVIAALAQHSRGADALLFLAAMH-ADDFVLNAYSFASALSACAAEKDSRT 910
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ +S + + +G+A+++MY KC A +VF + ++++SW+++I+
Sbjct: 911 GVQVHALVS-KSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYE 969
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVD-----QGL 164
NG +AL LF M+ G PD+VT +++SAC+ H +V + +
Sbjct: 970 QNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDM 1029
Query: 165 ILFKAMSTVYEIVPQTQHYACVVDM---------------YGRAGLLEEAEAFIREMPIE 209
+L A+ +Y +T+ CV D Y R+ +E+A+ +M +E
Sbjct: 1030 VLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM-VE 1088
Query: 210 AEWSVWGALLNA 221
W L+ A
Sbjct: 1089 KNVIAWNVLIAA 1100
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 41/260 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+ +SW ++ Y G + AV +F M + P T+ + + AC +AL G+ +
Sbjct: 216 NAISWNVIVRRYHLAGMGDMAVDMFFRM-LSAGVRPLGYTVSHAVLACRDNNALEEGRCI 274
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI-------------- 110
H+++ R+ V ++V++MY KCG + A +FN+ KDM+
Sbjct: 275 HAFV-LRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGR 333
Query: 111 -----------------SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
SW+ +++G + AL LF M D +T +++SA
Sbjct: 334 IADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSA 393
Query: 154 CSHGGLVDQGL---ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR-EMPIE 209
C+ G++D G + A+ + P ++ +V MY + G L AE + EM E
Sbjct: 394 CT--GILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKCGCLRSAERLLLFEMGSE 449
Query: 210 AEWSVWGALLNACRIHRNDE 229
+ W +L++ H E
Sbjct: 450 RDSYSWNSLISGYERHSMSE 469
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
V + N I CG V A ++F+++ +D SW+ +I+ + G +AL LFS M
Sbjct: 83 VPTFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNM 142
Query: 136 IINGVFPDDVTFIALISACS 155
G+ P D T +++S C+
Sbjct: 143 NSLGIRPKDATMASVLSCCA 162
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RDV+ W +MI G A G E + +F EM+K + + + T + L +C S + G
Sbjct: 548 PSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK-QGIKADSVTFLGALVSCISEGHVRLG 606
Query: 62 QYVHSYISTRYDLSV 76
+ SY + D S+
Sbjct: 607 R---SYFTLMMDESI 618
>gi|125585403|gb|EAZ26067.1| hypothetical protein OsJ_09920 [Oryza sativa Japonica Group]
Length = 359
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 176/299 (58%), Gaps = 20/299 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WTTM+ G A G ++AV++F+ M +A PN+AT+V+ L A ++ +L
Sbjct: 70 MPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVS 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HSY + + L +VGNA+I+ Y KCGD +A +VF L DM+SW T+ +A
Sbjct: 130 CKLLHSY-AVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVSWGTITRAMA 188
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+ALQLFSLM+ GV PD F+AL++AC H G VDQ L+ AM+ VY I P+
Sbjct: 189 VHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRVDQALLFLGAMARVYGISPRR 248
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-----------HRNDE 229
+HY CV+D GRAG L+ A R+MP AE+ AL C R E
Sbjct: 249 EHYTCVLDACGRAGQLDRAGEIFRQMP--AEYDAEKALGVYCSYAVSNGVAGVAGERLPE 306
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+F L + GT+A++S + A A RWEDA +R+ + ++K+ C+WIEV
Sbjct: 307 LF------LDGEVDAGGGTYAVVSKSLADAGRWEDACAVRERMAERRIEKEAACTWIEV 359
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 10/194 (5%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVG 95
+A PN TL +VL AC+ + L+ G+ +H R +N +V NAV+++Y KCG +
Sbjct: 2 DAAPNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALA 61
Query: 96 IAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFI-ALISA 153
A ++F+ + +D+ +W+T++ GLA NG + A+ +F M+ +G P+D T + AL +
Sbjct: 62 SARRLFDEMPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAV 121
Query: 154 CSHGGLVDQGLILFKAMSTVY--EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+ G LV L+ A+ E+V ++D Y + G A E+P E +
Sbjct: 122 ATSGSLVSCKLLHSYAVKQGLGGELVVGNA----LIDAYAKCGDAWLAFKVFVELP-ETD 176
Query: 212 WSVWGALLNACRIH 225
WG + A +H
Sbjct: 177 MVSWGTITRAMAVH 190
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 175/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D+VSW +I GYA+ +EA+ F++M+ +E PN T+ +LS C+ +S ++
Sbjct: 479 LSQKDLVSWNALISGYAQDECADEALKAFRDMQ-LEEIRPNTVTIACILSVCAHLSVMTL 537
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ VH Y+ R L + LV N++I Y KCGD+ ++ F + ++ +SW+++I G+
Sbjct: 538 CKEVHGYL-IRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMG 596
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+ + + LF M+ +G+ PD VTF A++SACSH G VD+G FK+M + + PQ
Sbjct: 597 MHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQL 656
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+ Y C+VD+ GRAG L +A I MP + +WG+LL +C+ H ++ + + + +
Sbjct: 657 EQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFK 716
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
SVG L++N + + + +K+R EI+ MGLKKK GCSWIEV+
Sbjct: 717 LVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVD 765
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 123/239 (51%), Gaps = 27/239 (11%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++ W+ +I A+ G +A+ +F E K ++ + LV VL ACSS++ G
Sbjct: 381 HNLIMWSAVISNCAQSGCPTKALELFYEF-KMEDGLADSGILVAVLRACSSLTLKPEGMQ 439
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++T+ VG+A++++Y KC D+G + +VF L+ KD++SW+ +ISG A +
Sbjct: 440 IHG-LATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDE 498
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMST 172
C +AL+ F M + + P+ VT ++S C+ HG L+ QGL ST
Sbjct: 499 CADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGL-----GST 553
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEM 230
V +V + ++ Y + G + + +MP + S W +++ +H R DEM
Sbjct: 554 V--LVSNS-----LIATYAKCGDINSSLYTFEKMPERNDVS-WNSIILGMGMHSRTDEM 604
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 18/232 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D+VSW TMI G+ + ++ F+ M PN V+ + +CSS+ +L+
Sbjct: 170 MPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTH 229
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-----WSTV 115
G+ +H + + L V + +++I MY+KCG + A +FN + KD + W+ +
Sbjct: 230 GREIHGVV-VKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVM 288
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-----GLVDQGLILFKAM 170
ISG NGC QAL LF M++ G+ PD T ++L S CS G GLI FK
Sbjct: 289 ISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLI-FK-- 345
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC 222
+ + + ++DMY + G + R +W A+++ C
Sbjct: 346 ---FGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQ-NHNLIMWSAVISNC 393
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 3/190 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+ V W MI GY G +A+ +F +M +P+ +T+V++ S CS ++FG+
Sbjct: 279 RRNAVIWNVMISGYVSNGCFSQALLLFIKM-MVWGIKPDYSTMVSLFSLCSESLDIAFGK 337
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H I ++ L + V A+++MY+KCGD+G +++F ++I WS VIS A +
Sbjct: 338 QIHGLI-FKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQS 396
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GC +AL+LF + D +A++ ACS L +G+ + ++T V
Sbjct: 397 GCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQI-HGLATKMGFVSDVFV 455
Query: 183 YACVVDMYGR 192
+ +VD+Y +
Sbjct: 456 GSALVDLYAK 465
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 29/205 (14%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
+I Y E GF ++A+ V+ +M ++ A + + G+ +H ++
Sbjct: 77 NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
L ++V N+++ MY KCG V A+Q+F + D++SW+T+ISG + ++L
Sbjct: 137 KLGVLDDVSVV-NSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSL 195
Query: 130 QLFSLMIIN-GVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYEIV 177
F M+ G++P+ V ++ I +CS HG +V GL
Sbjct: 196 MFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGL------------- 242
Query: 178 PQTQHY--ACVVDMYGRAGLLEEAE 200
+ Y + +++MY + G ++ AE
Sbjct: 243 -DVEEYLVSSLIEMYMKCGSIKNAE 266
>gi|218192339|gb|EEC74766.1| hypothetical protein OsI_10533 [Oryza sativa Indica Group]
Length = 392
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 176/299 (58%), Gaps = 20/299 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WTTM+ G A G ++AV++F+ M +A PN+AT+V+ L A ++ +L
Sbjct: 103 MPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVS 162
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HSY + + L +VGNA+I+ Y KCGD +A +VF L DM+SW T+ +A
Sbjct: 163 CKLLHSY-AVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVSWGTITRAMA 221
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+ALQLFSLM+ GV PD F+AL++AC H G VDQ L+ AM+ VY I P+
Sbjct: 222 VHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRVDQALLFLGAMARVYGISPRR 281
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-----------HRNDE 229
+HY CV+D GRAG L+ A R+MP AE+ AL C R E
Sbjct: 282 EHYTCVLDACGRAGQLDRAGEIFRQMP--AEYDAEKALGVYCSYAVSNGVAGVAGERLPE 339
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+F L + GT+A++S + A A RWEDA +R+ + ++K+ C+WIEV
Sbjct: 340 LF------LDGEVDAGGGTYAVVSKSLADAGRWEDACAVRERMAERRIEKEAACTWIEV 392
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV WT I A G EAV+ F M+ A PN TL +VL AC+ + L+ G+ +
Sbjct: 7 DVVKWTKRISALARSGRAAEAVAAFARMD----AAPNALTLASVLPACARLGDLALGRAI 62
Query: 65 HSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H R +N +V NAV+++Y KCG + A ++F+ + +D+ +W+T++ GLA NG
Sbjct: 63 HGLWLRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDEMPERDVFAWTTMVWGLARNG 122
Query: 124 CGRQALQLFSLMIING-VFPDDVTFI-ALISACSHGGLVDQGLILFKAMSTVY--EIVPQ 179
+ A+ +F M+ +G P+D T + AL + + G LV L+ A+ E+V
Sbjct: 123 SPQDAVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVSCKLLHSYAVKQGLGGELVVG 182
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D Y + G A E+P E + WG + A +H
Sbjct: 183 NA----LIDAYAKCGDAWLAFKVFVELP-ETDMVSWGTITRAMAVH 223
>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
Length = 957
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 178/289 (61%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVVSWT+MI Y G EA+ +F M++T EP+ +LV++LSA +S+SAL G+
Sbjct: 547 KDVVSWTSMISCYVHNGLANEALELFHLMKETG-VEPDSISLVSILSAAASLSALKKGKE 605
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H ++ R + + + +++MY +CG + + VFN + KD++ W+++I+ M+G
Sbjct: 606 IHGFL-IRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHG 664
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
CGR A+ LF M + PD + F+A++ ACSH GL+++G ++M Y++ P +HY
Sbjct: 665 CGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHY 724
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRA LEEA F++ M +E VW ALL AC+IH N E+ + Q+L+
Sbjct: 725 ACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDP 784
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L+SN ++ RW+D +R ++ GLKK GCSWIEV +
Sbjct: 785 ENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKV 833
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 138/240 (57%), Gaps = 35/240 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVVSWTT+I G+A+ G A+ +F+E++ + + + + ++L ACS + +S
Sbjct: 444 MPDKDVVSWTTIIAGHAQNGSHSRALELFREVQ-LEGIDLDVMMISSILLACSGLKLISS 502
Query: 61 GQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ +HSYI + +S+LV N ++++Y +CG+V A ++F ++ +KD++SW+++IS
Sbjct: 503 VKEIHSYIIRK---GLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY 559
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFK 168
NG +AL+LF LM GV PD ++ ++++SA + HG L+ +G +L
Sbjct: 560 VHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEG 619
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE---AFIREMPIEAEWSVWGALLNACRIH 225
++++ +VDMY R G LE++ FIR + +W +++NA +H
Sbjct: 620 SLAST------------LVDMYARCGTLEKSRNVFNFIR----NKDLVLWTSMINAYGMH 663
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 108/209 (51%), Gaps = 6/209 (2%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K DVVSW +MI Y+ G EA+ +F EM+K A PN T V L AC S +
Sbjct: 241 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA-PNTYTFVAALQACEDSSFIK 299
Query: 60 FGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G ++H+ + + Y ++V V NA+I MY + G +G A +F + D ISW++++SG
Sbjct: 300 QGMFIHATVLKSSYYINV--FVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSG 357
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
NG +ALQ + M G PD V I++I+A + G G+ + A + +
Sbjct: 358 FVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI-HAYAMKNGLDS 416
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMP 207
Q +VDMY + ++ + +MP
Sbjct: 417 DLQVGNSLVDMYAKFCSMKYMDCIFDKMP 445
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + + +W MIG Y G ++ +++EM + + T +L AC + +
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRY 198
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G VH +S+ V N+++ MY KC D+ A Q+F+ + K D++SW+++IS
Sbjct: 199 GAEVHGLAIKEGYVSIV-FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAY 257
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG +AL+LF M + P+ TF+A + AC + QG+ ++ V +
Sbjct: 258 SSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMF-------IHATVLK 310
Query: 180 TQHYACV------VDMYGRAGLLEEAEAFIREMPIEAEWSV--WGALLNA 221
+ +Y V + MY R G + EA M +W W ++L+
Sbjct: 311 SSYYINVFVANALIAMYARFGKMGEAANIFYNMD---DWDTISWNSMLSG 357
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 131/252 (51%), Gaps = 21/252 (8%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D +SW +M+ G+ + G EA+ + EM + +P+ ++++++A + G +
Sbjct: 347 DTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ-KPDLVAVISIIAASARSGNTLHGMQI 405
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+Y + + L VGN++++MY K + +F+ + KD++SW+T+I+G A NG
Sbjct: 406 HAY-AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGS 464
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYEIVPQ 179
+AL+LF + + G+ D + +++ ACS L+ I+ K +S ++V Q
Sbjct: 465 HSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS---DLVLQ 521
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHR---ND--EMFDPI 234
+VD+YG G ++ A A + E+ + W +++ +C +H N+ E+F +
Sbjct: 522 NG----IVDVYGECGNVDYA-ARMFELIEFKDVVSWTSMI-SCYVHNGLANEALELFHLM 575
Query: 235 RQELVNKKGVSV 246
++ V +S+
Sbjct: 576 KETGVEPDSISL 587
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 18 ERGFCEEAVSVFQEMEKTKEAEPNEATL----VNVLSACSSISALSFGQYVHSYISTRYD 73
+RG EA ++ + P++ +L +VL C S ALS GQ VH+++ T
Sbjct: 52 KRGSVNEAFQSLTDLFANQS--PSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNA 109
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
L S + ++ MY KCG + A ++F+ + +K + +W+ +I NG +L+L+
Sbjct: 110 LFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYR 169
Query: 134 LMIINGVFPDDVTFIALISACS-----------HGGLVDQGL--ILFKAMSTVYEIVPQT 180
M ++G+ D TF ++ AC HG + +G I+F A S
Sbjct: 170 EMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANS--------- 220
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+V MY + L A MP + + W ++++A
Sbjct: 221 -----IVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V+W +MI GY E E+ + VF+ M +++ PN +L +VL CS++SAL
Sbjct: 255 MAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR-VRPNPLSLSSVLLGCSNLSALPL 313
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +S + LS ++I+MY KCGD+ A ++F + KD+ISW+ +ISG A
Sbjct: 314 GRQMHQLVS-KSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYA 372
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+AL LF M + PD +TF+A+I AC+H G VD G+ FK+M + I +
Sbjct: 373 QHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKP 432
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY CV+D+ GRAG L+EA + I+EMP + +++G LL ACRIH+N ++ + + L+N
Sbjct: 433 VHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLN 492
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
S + ++N +A ++W+ K+R ++ + K G SWIE+
Sbjct: 493 LDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEI 540
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 116/240 (48%), Gaps = 16/240 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+ SW T+I G+A+ G ++A +F M E N + ++S L
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVM-----PEKNGVSWSAMISGYVEHGDLEA 216
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ ++ + + S +V A++ Y+K G V +A ++F +A K++++W+++I+G
Sbjct: 217 AEELYKNVGMK-----SVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYV 271
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N L++F MI + V P+ ++ +++ CS+ + G + + +S + T
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKS-PLSKDT 330
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQ 236
++ MY + G L+ A EMP + S W A+++ H + +FD +R
Sbjct: 331 TACTSLISMYCKCGDLDSAWKLFLEMPRKDVIS-WNAMISGYAQHGAGRKALHLFDKMRN 389
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 54/255 (21%)
Query: 1 MPKRDVVSWTTMIGGYAE-RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
M R V+W TM+ GY + G +EA +F ++ EP+ + N++ C
Sbjct: 99 MSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI-----PEPDSVSY-NIMLVC------- 145
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
Y+ SY V A+ FN + KD+ SW+T+ISG
Sbjct: 146 ---YLRSY-------------------------GVEAALAFFNKMPVKDIASWNTLISGF 177
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A NG ++A LFS+M + V++ A+IS G ++ L+K + + +V +
Sbjct: 178 AQNGQMQKAFDLFSVMPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVG-MKSVVVE 232
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIE--AEW-SVWGALLNACRIHRNDEMFDPIRQ 236
T ++ Y + G +E AE + M ++ W S+ + CR ++F + +
Sbjct: 233 T----AMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIE 288
Query: 237 ELVNKKGVSVGTFAL 251
V +S+ + L
Sbjct: 289 SRVRPNPLSLSSVLL 303
>gi|255542634|ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548341|gb|EEF49832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 736
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 178/289 (61%), Gaps = 4/289 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKT-KEAEPNEATLVNVLSACSSISALSFGQY 63
D VS T ++ G+ + GF EEA+ F +M E +PN + V L AC ++L G+
Sbjct: 154 DEVSMTVILVGFTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAV--LGACGVDTSLGLGKQ 211
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+HS + R L + VGN +INMY KCG++ +I+VFN L ++ +SW+++I+ A +G
Sbjct: 212 IHSLVIKR-SLGSNPFVGNGLINMYSKCGELQESIKVFNGLTCRNSVSWNSMIAAFARHG 270
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL+L+ MI G P D+TF++L+ ACSH GLVD+G+ K+M+ VY I P+ +HY
Sbjct: 271 DGFRALRLYEEMIQEGAVPTDLTFLSLLHACSHVGLVDKGMKFLKSMTKVYGISPRAEHY 330
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
ACVVDM GRAGLL EA++ I + I+ + +W ALL AC I + E+ ++L+ +
Sbjct: 331 ACVVDMLGRAGLLNEAKSLIERLSIKPDVLIWQALLGACSIRGDTEIGKYAAEQLLLLEP 390
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L++N ++ RW++ + ++ MG+ K+TG SWIE+ +
Sbjct: 391 KKPAPYVLLANIYSSKGRWDERARTIKRMKEMGVAKETGISWIEIEKKV 439
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 13/204 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+V++WT +I G ++ E+++ +F +M + EPN T ++ L+ACS + AL
Sbjct: 49 MLERNVITWTAIISGLSQNEMYEDSLGLFVQM-RCGLIEPNFLTYLSSLTACSGLQALEK 107
Query: 61 GQYVHSYISTRYDLSV-SNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H + + L + SNL + +A++++Y KCG + A +VF D +S + ++ G
Sbjct: 108 GRQIHGLV---WKLGIQSNLCIESALMDLYSKCGSLEDARRVFESAVELDEVSMTVILVG 164
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM-STVYEIV 177
NG +A++ F M+ G D A++ AC VD L L K + S V +
Sbjct: 165 FTQNGFEEEAIEFFVKMVNIGTEVDPNMVSAVLGACG----VDTSLGLGKQIHSLVIKRS 220
Query: 178 PQTQHYA--CVVDMYGRAGLLEEA 199
+ + +++MY + G L+E+
Sbjct: 221 LGSNPFVGNGLINMYSKCGELQES 244
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ +++ GD+ QVF+ + +++I+W+ +ISGL+ N +L LF M +
Sbjct: 27 NTMVSGFLRNGDLDTGRQVFDEMLERNVITWTAIISGLSQNEMYEDSLGLFVQMRCGLIE 86
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH--YACVVDMYGRAGLLEEA 199
P+ +T+++ ++ACS +++G + V+++ Q+ + ++D+Y + G LE+A
Sbjct: 87 PNFLTYLSSLTACSGLQALEKGR---QIHGLVWKLGIQSNLCIESALMDLYSKCGSLEDA 143
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MY KCG A++VF+ + +D +SW+T++SG NG Q+F M+ V +T
Sbjct: 1 MYFKCGVFSDAVKVFDDMPTRDTVSWNTMVSGFLRNGDLDTGRQVFDEMLERNV----IT 56
Query: 147 FIALISACSHGGLVDQGLILFKAM 170
+ A+IS S + + L LF M
Sbjct: 57 WTAIISGLSQNEMYEDSLGLFVQM 80
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 179/294 (60%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ V+W +I GY +A+ F+ M A+P+E T+V VLSACS + A +
Sbjct: 150 MPERNAVTWNALITGYTHNRKFVKAIDAFRGM-LADGAQPSERTVVVVLSACSHLGAFNQ 208
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H +I R L+V VG A+I+MY KCG V +VF + K++ +W+ +ISG
Sbjct: 209 GKWIHEFIYHNRLRLNV--FVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGY 266
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AMNG G ALQ FS M++ PD+VTF+ ++ AC H GLV +G F +M + + P+
Sbjct: 267 AMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPR 326
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLLEEA I+ M IE + +W ALL ACR+H N ++ + I + L+
Sbjct: 327 IEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLI 386
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + L+SN ++ RW + K+R + G++K GCS IE+N ++
Sbjct: 387 ELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVVY 440
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
+MI Y + ++ +F M K P+ +T VL A + + G+ +H I
Sbjct: 58 NSMIRTYLDLNKHLNSLYIFALMHKF-SILPDSSTFPAVLKATAQLCDTGVGKMIHG-IV 115
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
+ A++++Y C + A Q+F+ + ++ ++W+ +I+G N +A+
Sbjct: 116 IQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAI 175
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ 183
F M+ +G P + T + ++SACSH G +QG ++E + +
Sbjct: 176 DAFRGMLADGAQPSERTVVVVLSACSHLGAFNQG-------KWIHEFIYHNRLRLNVFVG 228
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G + E E E+ E W L++
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIR-EKNVYTWNVLISG 265
>gi|115451565|ref|NP_001049383.1| Os03g0216400 [Oryza sativa Japonica Group]
gi|108706851|gb|ABF94646.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547854|dbj|BAF11297.1| Os03g0216400 [Oryza sativa Japonica Group]
gi|215741245|dbj|BAG97740.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 392
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/299 (40%), Positives = 176/299 (58%), Gaps = 20/299 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV +WTTM+ G A G ++AV++F+ M +A PN+AT+V+ L A ++ +L
Sbjct: 103 MPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVS 162
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HSY + + L +VGNA+I+ Y KCGD +A +VF L DM+SW T+ +A
Sbjct: 163 CKLLHSY-AVKQGLGGELVVGNALIDAYAKCGDAWLAFKVFVELPETDMVSWGTITRAMA 221
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+ALQLFSLM+ GV PD F+AL++AC H G VDQ L+ AM+ VY I P+
Sbjct: 222 VHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRVDQALLFLGAMARVYGISPRR 281
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI-----------HRNDE 229
+HY CV+D GRAG L+ A R+MP AE+ AL C R E
Sbjct: 282 EHYTCVLDACGRAGQLDRAGEIFRQMP--AEYDAEKALGVYCSYAVSNGVAGVAGERLPE 339
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+F L + GT+A++S + A A RWEDA +R+ + ++K+ C+WIEV
Sbjct: 340 LF------LDGEVDAGGGTYAVVSKSLADAGRWEDACAVRERMAERRIEKEAACTWIEV 392
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVV WT I A G EAV+ F M+ A PN TL +VL AC+ + L+ G+ +
Sbjct: 7 DVVQWTKRISALARSGRAAEAVAAFARMD----AAPNALTLASVLPACARLGDLALGRAI 62
Query: 65 HSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H R +N +V NAV+++Y KCG + A ++F+ + +D+ +W+T++ GLA NG
Sbjct: 63 HGLWLRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDEMPERDVFAWTTMVWGLARNG 122
Query: 124 CGRQALQLFSLMIING-VFPDDVTFI-ALISACSHGGLVDQGLILFKAMSTVY--EIVPQ 179
+ A+ +F M+ +G P+D T + AL + + G LV L+ A+ E+V
Sbjct: 123 SPQDAVAMFRGMLSDGDAAPNDATVVSALHAVATSGSLVSCKLLHSYAVKQGLGGELVVG 182
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D Y + G A E+P E + WG + A +H
Sbjct: 183 NA----LIDAYAKCGDAWLAFKVFVELP-ETDMVSWGTITRAMAVH 223
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 180/296 (60%), Gaps = 5/296 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ + SW MI GYA+ G E AV++FQ+M+ PN T+ + LSAC+ + ALS
Sbjct: 383 MPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALN-VRPNPLTISSALSACAQLGALSL 441
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++VH I+ L ++ V A+I+MYVKCG + A +F+ + K+++SW+ +ISG
Sbjct: 442 GKWVHKIIANE-KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYG 500
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +AL+L+ M+ + P TF++++ ACSHGGLV +G +F++M++ Y I P
Sbjct: 501 LHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGI 560
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV 239
+H C+VD+ GRAG L+EA I E P A +WGALL AC +H++ ++ Q+L
Sbjct: 561 EHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLF 620
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV--NPSIF 293
+ + G + L+SN + ++ +A +R E + L K GC+ IE+ P +F
Sbjct: 621 ELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVF 676
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 113/236 (47%), Gaps = 35/236 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P D V W T++ G + EA+ F M P+ TL +VL A + ++ +
Sbjct: 184 VPSPDTVLWNTLLAGLSG----SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTM 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH++ + L+ V +I++Y KCGD+ A +F+ + D+++++ +ISG +
Sbjct: 240 GRCVHAF-GEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYS 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALI-----------SACSHGGLVDQGL----I 165
+NG +++LF ++ G+ P T +ALI + C H +V GL
Sbjct: 299 INGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAP 358
Query: 166 LFKAMSTVY-------------EIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM 206
+ A++T+Y + +P+ + + ++ Y + GL E A A ++M
Sbjct: 359 VSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQM 414
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D+V++ +I GY+ G +V +F+E+ P+ +TLV ++ S
Sbjct: 282 MEGPDLVTYNALISGYSINGMVGSSVELFKELVGMG-LRPSSSTLVALIPVHSPFGHEPL 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H+++ + L + V A+ +Y + D+ A + F+ + K M SW+ +ISG A
Sbjct: 341 AGCLHAHV-VKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYA 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ LF M V P+ +T + +SAC+ G + G + K ++ ++
Sbjct: 400 QNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIAN-EKLELNV 458
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G + EA M
Sbjct: 459 YVMTALIDMYVKCGSIAEARCIFDSM 484
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 172/289 (59%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSWT MI Y + G EE ++F ++ K+ PNE T VL+AC+ +A G+
Sbjct: 286 RDVVSWTAMIDRYFKEGRREEGFALFSDLLKSG-IWPNEFTFSGVLNACADHAAEELGKQ 344
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH Y+ TR S+ + +++MY KCG++ A +VFN + D++SW+++ISG A NG
Sbjct: 345 VHGYM-TRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNG 403
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+ALQ F L++ +G PD +TF+ ++SAC+H GLVD+GL F ++ + + HY
Sbjct: 404 QPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHY 463
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC++D+ R+G L+EAE I +MPIE + +W +LL CRIH N ++ + L +
Sbjct: 464 ACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEP 523
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ T+ ++N +A A W ++R + G+ KK G SWIE+ +
Sbjct: 524 ENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKREV 572
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 3/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD SWT M GY EEA+ +F+ M++ + + N+ T+ + L+A ++I +L
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +I R L + +V +A+ +MY KCG +G A +F+ +D++SW+ +I
Sbjct: 241 GKEIHGHI-LRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYF 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G + LFS ++ +G++P++ TF +++AC+ + G + M+ + P +
Sbjct: 300 KEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRI-GFDPSS 358
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +V MY + G ++ A MP + W +L++
Sbjct: 359 FAASTLVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLISG 398
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 23 EEAVSVFQEMEKTKEA--------EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL 74
+EA+ + E ++ +EA P+ AT +L C + AL G VH++ T
Sbjct: 62 KEAIDILCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTS-GF 120
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
++ N +++MY+KC + A ++F+ +A +D+ SW+ +ISG A G ++A +LF
Sbjct: 121 VPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQ 180
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
M D+ ++ A+ S ++ L LF+AM
Sbjct: 181 MTER----DNFSWTAMTSGYVRHDQHEEALELFRAM 212
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 9/160 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D+VSWT++I GYA+ G +EA+ F+ + K+ +P+ T V VLSAC+ +
Sbjct: 384 MPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSG-TQPDHITFVGVLSACTHAGLVDK 442
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G I ++ L+ + +I++ + G + A + + + + D W++++ G
Sbjct: 443 GLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGC 502
Query: 120 AMNG----CGRQALQLFSLMIINGVFPDDVTFIALISACS 155
++G R A LF + N P T +A I A +
Sbjct: 503 RIHGNLKLAKRAAEALFEIEPEN---PATYTTLANIYATA 539
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 187/292 (64%), Gaps = 7/292 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D++SWT MI G+ ++GF EEA+ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 112 MPDPDLISWTAMINGFVKKGFHEEALVWFREMQISG-VKPDYVAIIAALAACTNLGALSF 170
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A +VF+ + + ++SW++VI G A
Sbjct: 171 GLWVHRYVLSQ-DFKNNVRVNNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSA 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++G+ F+ M Y+I P+
Sbjct: 230 ANGNAHESLVYFRKMQEEGFNPDAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRI 289
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND-EMFDPIRQEL- 238
+HY C+VD+Y RAG LE+A ++ M ++ V G+LL ACR H N+ E+ + + + L
Sbjct: 290 EHYGCLVDLYSRAGRLEDALKLVQSMSMKPNEVVIGSLLAACRTHGNNTELAERLMKHLS 349
Query: 239 -VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+N KG S + ++SN +A +WE A K+R +++ +GLKK+ G S IE++
Sbjct: 350 EMNVKGHS--NYVILSNMYAADGKWEGAXKMRRKMKGLGLKKQPGFSSIEID 399
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 39 EPNEATLVNVLSACSSISALS--FGQYVHSYISTRYDLSVSN-LVGNAVINMYVK----- 90
EPN T + ++S C S G +H Y + + L ++ +VG A++ MY K
Sbjct: 14 EPNHITFIALISGCGDFPTGSETLGDLLHGY-ACKLGLDRTHVMVGTAILGMYSKRCRFG 72
Query: 91 --------------------------CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
G V A+++F+ + D+ISW+ +I+G G
Sbjct: 73 KARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGF 132
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL F M I+GV PD V IA ++AC++ G + GL + + + + + +
Sbjct: 133 HEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLS-QDFKNNVRVNN 191
Query: 185 CVVDMYGRAGLLEEAEAFIREM 206
++D+Y R G +E A +M
Sbjct: 192 SLIDLYCRCGCVEFAREVFDKM 213
>gi|326532424|dbj|BAK05141.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 413
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 172/277 (62%), Gaps = 2/277 (0%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75
Y + G + A VF++M+ EP+ AT+V+++ AC+ ++AL G+ H + R ++
Sbjct: 16 YVQNGMADAAFLVFRKMQ-VCNVEPDVATMVSLIPACAHLAALQHGKCSHGSVIVR-GMA 73
Query: 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM 135
+ NA+I+MY KCG + + Q+F+ + +D++SW+T+I+G ++G G++A LF M
Sbjct: 74 PETSICNALIDMYAKCGRIAFSRQIFDAMPSRDIVSWNTMIAGYGIHGLGKEATALFLDM 133
Query: 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195
+ PD VTFI LISACSH GLV +G F M+ Y I P+ +HY +VD+ R G
Sbjct: 134 KNHACEPDGVTFICLISACSHSGLVTEGKHWFHMMAQKYGITPRMEHYISMVDLLARGGF 193
Query: 196 LEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT 255
L+EA FI+ MP++A+ VWGALL ACR+H+N ++ + + + G F L+SN
Sbjct: 194 LDEAYQFIQSMPMKADVRVWGALLAACRVHKNIDLGKQVARVIQKLGPEGTGNFVLLSNI 253
Query: 256 FAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
F+ A R+++A ++R + G KK GCSWIE+N S+
Sbjct: 254 FSAAGRFDEAAEVRIIQKEKGFKKSPGCSWIEINGSL 290
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+VSW TMI GY G +EA ++F +M K EP+ T + ++SACS ++
Sbjct: 102 MPSRDIVSWNTMIAGYGIHGLGKEATALFLDM-KNHACEPDGVTFICLISACSHSGLVTE 160
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G++ ++ +Y ++ +++++ + G + A Q + K D+ W +++
Sbjct: 161 GKHWFHMMAQKYGITPRMEHYISMVDLLARGGFLDEAYQFIQSMPMKADVRVWGALLA 218
>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Brachypodium distachyon]
Length = 571
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 174/291 (59%), Gaps = 6/291 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RD+ W +++ Y +G + +F++M T +E TL+ V+SACS + AL G+
Sbjct: 165 QRDLALWNSLLHAYLSQGLYTHVLRLFRQMVAT-----DEVTLLAVVSACSHLGALDTGR 219
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ H+Y + + NL G A++NMY++CGDV A VF+ + KD+ +WS +I+GLA+N
Sbjct: 220 WAHAYHARTCRNTTRNL-GTALLNMYMRCGDVESAWSVFHEMLDKDVRTWSVMIAGLAVN 278
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G R AL+LF+ M GV PD +T A++SACSH G+VD+G + M Y + P +H
Sbjct: 279 GLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPIEYHLQPTIEH 338
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y CVVD+ GRAG LEEA A I +P +A+ ++WGALL ACR H+N +M E++
Sbjct: 339 YGCVVDLLGRAGQLEEALALIETVPFKADVALWGALLVACRAHKNVDMGQMAAMEILKLD 398
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G +SN +A A +W+ ++R ++ + K G S +E++ ++
Sbjct: 399 PHHAGACVFLSNAYAAAGKWDLVQEVRSSMKEHRIYKPPGSSIVELDGVVY 449
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI------SALSFG 61
S+ T I A AV++++ M + PN T +L+AC+ + + G
Sbjct: 59 SYNTTIRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAG 118
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA--YKDMISWSTVISGL 119
VH+ + R S + ++++ Y GD+ A +VF+ +D+ W++++
Sbjct: 119 TAVHASLFRRGLESRDRFISASMLSFYAAAGDLPAAREVFDRSPPNQRDLALWNSLLHAY 178
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G L+LF M+ D+VT +A++SACSH G +D G + +
Sbjct: 179 LSQGLYTHVLRLFRQMVAT----DEVTLLAVVSACSHLGALDTGRWAHAYHARTCRNTTR 234
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
A +++MY R G +E A + EM ++ + W ++
Sbjct: 235 NLGTA-LLNMYMRCGDVESAWSVFHEM-LDKDVRTWSVMI 272
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DV +W+ MI G A G +A+ +F EM K +P+ T+ VLSACS +
Sbjct: 260 MLDKDVRTWSVMIAGLAVNGLPRDALKLFAEM-KNIGVDPDSITMTAVLSACSHAGMVDE 318
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVI 116
G+ + Y L + V+++ + G + A+ + + +K D+ W ++
Sbjct: 319 GKMFLHCMPIEYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVPFKADVALWGALL 375
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++ SW MI GY + EA+ +F EM+ T EP+E T+V+VL A + + AL
Sbjct: 416 MPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDL 475
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH ++ R L + VG A+I+MY KCG++ + VF+ + K+ SW+ +I+ A
Sbjct: 476 GGWVHRFVR-RKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFA 534
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++AL LF M G P+++T I ++SAC+H GLV++G FKAM + + P+
Sbjct: 535 INGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKI 593
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE + MP EA + + L AC ++ + + +E +
Sbjct: 594 EHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIK 653
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + ++ N +A RW++A++++ +RR G+KK+ GCS IEV+ ++
Sbjct: 654 MEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVW 706
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VSWT +IGGY G + A +F +M E + A ++ A + +
Sbjct: 323 MIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM-----IEKDSAAFNTMIDAYVKLGDMCS 377
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R +S + +I Y G++ A +F+ + K++ SW+ +ISG
Sbjct: 378 ARKLFDEMPERSVVSWT-----IMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYX 432
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +AL+LF M + PD+VT ++++ A + G +D G + + + ++
Sbjct: 433 QNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR-KKLDRA 491
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + ++ MP E E + W AL+NA I+
Sbjct: 492 TNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASWNALINAFAIN 536
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 16/223 (7%)
Query: 2 PKRD-VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P RD +MI Y E+ ++++++ + P+ T + +C+ A+
Sbjct: 221 PHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWE 280
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +HS++ + A+++MY K G + A ++F+ + + +SW+ +I G
Sbjct: 281 GQEIHSHVVA-VGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYV 339
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A +LF MI D F +I A G + LF M P+
Sbjct: 340 RSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM-------PER 388
Query: 181 QHYACVVDMYGRA--GLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ + +YG + G L+ A + MP E W A+++
Sbjct: 389 SVVSWTIMIYGYSSNGNLDSARSLFDAMP-EKNLFSWNAMISG 430
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 175/288 (60%), Gaps = 5/288 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD +W MI GY + G EE +VF++M + + PN TL ++L AC+ + + G+
Sbjct: 488 RDEATWNAMIAGYTQNGLSEEGFAVFRKMIE-QNVRPNAVTLASILPACNPMGTIGLGKQ 546
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + R L+ + VG A+++MY K G + A VF K+ ++++T+I +G
Sbjct: 547 IHGF-AIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHG 605
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +AL LF M+ +G+ PD VTF+A++SACS+ GLVD+GL +F++M Y+I P ++HY
Sbjct: 606 MGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHY 665
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAE-WSVWGALLNACRIHRNDEMFDPIRQELV--N 240
CV DM GR G + EA F++ + E + +WG+LL ACRIH E+ + +L+
Sbjct: 666 CCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEME 725
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
K G L+SN +A W++ +++R E+R+ GL K+ GCSW+EV
Sbjct: 726 KGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+ W TMIGGY + EA+ +F ++ ++++ ++ T ++ L+A S + L G+
Sbjct: 283 ERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGR 342
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+YI + + ++ NA+I MY +CG +G + +VF+ + +D+++W+T++S N
Sbjct: 343 QLHAYI-LKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMS 171
G + L L M G D VT AL+S S H L+ G I F+ M
Sbjct: 402 GLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMD 460
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEA-FIREMPIEAEWSVWGALL 219
++DMY ++GL+ A+ F + + + + W A++
Sbjct: 461 ------------GYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMI 497
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 87/165 (52%), Gaps = 5/165 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVV+W TM+ + + G +E + + EM+K + + TL +LS S++ +
Sbjct: 383 MLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQK-QGFMVDSVTLTALLSLASNLRSQEI 441
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISG 118
G+ H+Y+ R+ + + G +I+MY K G + A Q+F N +D +W+ +I+G
Sbjct: 442 GKQAHAYL-IRHGIQFEGMDG-YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAG 499
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
NG + +F MI V P+ VT +++ AC+ G + G
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG 544
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 11/226 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR+VV+W TMI Y + EA +F+ M + P + VNV A ++
Sbjct: 178 MRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVWRMNDYDN 236
Query: 61 GQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++ + V + V ++ I MY + G V A ++F+ ++ W+T+I G
Sbjct: 237 ANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGY 296
Query: 120 AMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAM---STVYE 175
N C +A+ LF ++ + F DDVTF++ ++A S +D G L + ST+ +
Sbjct: 297 VQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQ 356
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+V ++ MY R G + + M +E + W +++A
Sbjct: 357 VVILN----AIIVMYSRCGSIGTSFKVFSNM-LERDVVTWNTMVSA 397
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ V W T+I G+ +A+ + M + + + T + L AC+ +L
Sbjct: 63 IPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACAQARSLKL 122
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC-------------GDVGIAIQVFNMLAYK 107
G+ +H ++ R S +V N+++NMY C + + +VF+ + +
Sbjct: 123 GKALHCHV-LRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKR 181
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
++++W+T+IS +A ++F M+ G+ P V+F+ + A
Sbjct: 182 NVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPA 227
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++ V++TTMI Y + G E A+S+F M + +P+ T V +LSACS + G
Sbjct: 588 EKNSVTYTTMILSYGQHGMGERALSLFHAMLGSG-IKPDSVTFVAILSACSYAGLVDEGL 646
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94
+ + Y + S+ V +M + G V
Sbjct: 647 RIFQSMEREYKIQPSSEHYCCVADMLGRVGRV 678
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 172/286 (60%), Gaps = 3/286 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +DVVSW M+GGY +EA+ +F EM + E P+E T++++LSAC+ + G
Sbjct: 231 PMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGEC-PDEVTMLSLLSACADLG--DXG 287
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VH+ I +S L+GNA+++MY KCG++G + VF ++ KDM+SW++VI GLA
Sbjct: 288 EKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAF 347
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G ++L LF M V PD++TF+ +++ACSH G VD+G F M Y+I P +
Sbjct: 348 HGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIR 407
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
H CVVDM RAGLL+EA FI M IE VW +LL AC++H + E+ ++L+
Sbjct: 408 HCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRM 467
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+SN +A W+ A +R + G+ K G S++E
Sbjct: 468 RVDQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVE 513
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 86/193 (44%), Gaps = 45/193 (23%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+ +I GYA+RG A +F EM K
Sbjct: 170 KGDVVAWSALIAGYAQRGDLSVARKLFDEMPK---------------------------- 201
Query: 63 YVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+LV N +I Y K G++ A ++F+ KD++SW+ ++ G +
Sbjct: 202 --------------RDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVL 247
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+ ++AL+LF M G PD+VT ++L+SAC+ G D G + + + + T
Sbjct: 248 HNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTL 305
Query: 182 HYACVVDMYGRAG 194
+VDMY + G
Sbjct: 306 LGNALVDMYAKCG 318
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ D W T I G ++ AV+++ +M + +P+ T VL AC+ + ++
Sbjct: 67 IPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTH-RSVKPDNFTFPLVLKACTKLFWVNT 125
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + R + +V N ++ + KCGD+ +A +F+ D+++WS +I+G A
Sbjct: 126 GSVVHGRV-FRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYA 184
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167
G A +LF M D V++ +I+A + G ++ LF
Sbjct: 185 QRGDLSVARKLFDEMPKR----DLVSWNVMITAYTKHGEMECARRLF 227
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A+Q+F + D W+T I G + + A+ L++ M V PD+ TF ++ AC+
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 157 GGLVDQGLIL 166
V+ G ++
Sbjct: 120 LFWVNTGSVV 129
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 175/290 (60%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK-TKEAEPNEATLVNVLSACSSISALS 59
+P++DVV+W +I +A+ +F+ M+ T +P++ T + +L AC+ ++AL
Sbjct: 188 VPQKDVVAWNVLISCLTRNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALE 247
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
FG+ +H YI + SNL N++I+MY +CG + A +VF+ + K+++SWS +ISGL
Sbjct: 248 FGERIHGYIQQHGYNTESNLC-NSLISMYSRCGRMDKAYEVFDKMTEKNVVSWSAMISGL 306
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+MNG GR+A++ F M NGV P D TF A++SACSH GLVD+G+ F M + I P
Sbjct: 307 SMNGHGREAIEAFWEMQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPN 366
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY C+VD+ GRAG+L++A I M + + ++W LL ACRIH + + + I + L+
Sbjct: 367 VHHYGCIVDLLGRAGMLDQAYELIMSMEVRPDATMWRTLLGACRIHGHGNLGERIVEHLI 426
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
K G + L+ N ++ A W+ ++R ++ G+ C+ IE+N
Sbjct: 427 ELKSQEAGDYVLLLNIYSSAGNWDKVTELRKLMKEKGIYTTPCCTTIELN 476
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 105/221 (47%), Gaps = 12/221 (5%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFGQYV 64
V + M+ Y+ E + ++++ME+ A+P ++ + +C + +L FG +
Sbjct: 92 VSHYNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFA--VKSCIKLLSLLFGIQI 149
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I +L+ +++++Y CG A ++F+ + KD+++W+ +IS L N
Sbjct: 150 HARIFIN-GHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCLTRNKR 208
Query: 125 GRQALQLFSLMIINGVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
R AL LF +M PD VT + L+ AC+ ++ G + + + T+
Sbjct: 209 TRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGE---RIHGYIQQHGYNTES 265
Query: 183 YAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
C ++ MY R G +++A +M E W A+++
Sbjct: 266 NLCNSLISMYSRCGRMDKAYEVFDKM-TEKNVVSWSAMISG 305
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 182/292 (62%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW++MI +A+ GF EA+++FQ M+ +P+E +++V+SA S + L
Sbjct: 145 MPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLEL 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +IS R L + +G A+++M+ +CG + +++VF+ + +++++W+ +I+GLA
Sbjct: 205 GKWIRGFIS-RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL++F M +G PD VTF ++ ACSHGGLV +G +F+++ Y + P
Sbjct: 264 VHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLP 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA F+ MPI +W LL AC H E+ + +++++
Sbjct: 324 EHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINE 383
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN + G RW + +R+ +R + KK GCS I VN I
Sbjct: 384 LDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLI 435
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 119/251 (47%), Gaps = 14/251 (5%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ T VL AC+ + G +HS + +D V V N +I+ Y CG + A+
Sbjct: 85 PDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDV--YVQNGLIHFYGCCGFLDFAL 139
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHG 157
+VF + +D++SWS++I+ A NG G +AL LF M ++ V PD+V ++++SA S
Sbjct: 140 KVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G ++ G + + + + +VDM+ R G +EE+ EM E W A
Sbjct: 200 GDLELGKWI-RGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTA 257
Query: 218 LLNACRIH-RNDE---MFDPIRQELVNKKGVS-VGTFALMSNTFAGADRWEDANKIRDEI 272
L+N +H R+ E MF +R V+ G S+ ++ W IR+E
Sbjct: 258 LINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317
Query: 273 RRMGLKKKTGC 283
L + GC
Sbjct: 318 GMEPLPEHYGC 328
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 178/292 (60%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ K+ V+SW MI Y +EAV ++ +ME EP+ ++V+VL A +SALS
Sbjct: 249 LTKKSVISWNVMIAMYVNNSMPKEAVVLYSQME-ANGVEPDVVSIVSVLPAYGDLSALSL 307
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH + + R L + L+ NA+I+MY KCG + A VFN + ++D++SW+++IS
Sbjct: 308 GRRVHKF-AERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYG 366
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G GR A+ +F+ M +G+ PD + F+++++ACSH GL+D G F M+ I P+
Sbjct: 367 KCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAEC-GITPKL 425
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H+ACVVD+ GRAG ++EA FIR+MP+E + VWG LL+ACR++ N + +L+
Sbjct: 426 EHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLM 485
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A RW D IR + R G+KK G S +E+N +
Sbjct: 486 LNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGV 537
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 37/221 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDVVSW +M+ YA+ G +A+ + +EME +PN+ T+ ++L A
Sbjct: 181 IPCRDVVSWNSMVSVYAQNGRFNDALELCREMEAL-NLKPNDCTMASLLPA--------- 230
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
V+N + V +YVK ++F L K +ISW+ +I+
Sbjct: 231 ---------------VTNTTSDNV--LYVK--------EMFLKLTKKSVISWNVMIAMYV 265
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++A+ L+S M NGV PD V+ ++++ A + G + K + +++P
Sbjct: 266 NNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHK-FAERKKLLPNL 324
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G L +A A +M S W ++++A
Sbjct: 325 LLENALIDMYAKCGCLRDARAVFNQMQFRDVVS-WTSIISA 364
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
++VV + MI Y ++A+ V++ M T+ P+ T VL A S +L G
Sbjct: 83 KNVVFFNVMIRSYVNNHLYKDALLVYKTM-YTQGFVPDMYTYPCVLKASSRSDSLWVGLQ 141
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + L ++ VGN +I MY KC + A QV + + +D++SW++++S A NG
Sbjct: 142 IHGAV-LKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
AL+L M + P+D T +L+ A ++
Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPAVTN 233
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139
VG ++ +Y CG+ G+A +F+ + K+++ ++ +I N + AL ++ M G
Sbjct: 56 VGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG 115
Query: 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLE 197
PD T+ ++ A S + GL + A V +I Y ++ MYG+ L+
Sbjct: 116 FVPDMYTYPCVLKASSRSDSLWVGLQIHGA---VLKIGLDLNLYVGNGLIAMYGKCKSLK 172
Query: 198 EAEAFIREMP 207
EA+ + E+P
Sbjct: 173 EAQQVLDEIP 182
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 176/289 (60%), Gaps = 23/289 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D++SW TM+G E +P+ T+ +L AC+S+SAL G+
Sbjct: 416 KDIISWNTMVG----------------------ELKPDSRTMACILPACASLSALERGKE 453
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H YI R S V NA++++YVKCG +G+A +F+M+ KD++SW+ +I+G M+G
Sbjct: 454 IHGYI-LRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHG 512
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ F+ M G+ PD+V+FI+++ ACSH GL++QG F M + I P+ +HY
Sbjct: 513 YGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHY 572
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ R G L +A FI +PI + ++WGALL CRI+ + E+ + + + + +
Sbjct: 573 ACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP 632
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + L++N +A A++ E+ ++R++I + GL+K GCSWIE+ +
Sbjct: 633 ENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRV 681
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 114/213 (53%), Gaps = 17/213 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV+SW +MI GY G E + ++++M + + AT+++VL C++ LS G+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKA 272
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VHS I + ++ ++ N +++MY KCGD+ A++VF + ++++SW+++I+G +
Sbjct: 273 VHSLAIKSSFERRIN--FSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP---- 178
G A+ L M GV D V +++ AC+ G +D G V++ +
Sbjct: 331 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNG-------KDVHDYIKANNM 383
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIE 209
+ + C ++DMY + G +E A + M ++
Sbjct: 384 ASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK 416
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 38/222 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT+MI GY G+ + A+ + Q+MEK + + + + ++L AC+ +L
Sbjct: 312 MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEK-EGVKLDVVAITSILHACARSGSLDN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH YI +++ + V NA+++MY KCG + A VF+ + KD+ISW+T++ L
Sbjct: 371 GKDVHDYIKAN-NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELK 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYE 175
PD T ++ AC+ +++ G IL S+
Sbjct: 430 ---------------------PDSRTMACILPACASLSALERGKEIHGYILRNGYSS--- 465
Query: 176 IVPQTQHYA-CVVDMYGRAGLLEEAEAFIREMPIE--AEWSV 214
+H A +VD+Y + G+L A +P + W+V
Sbjct: 466 ----DRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTV 503
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V + I + + G E A+ + +K+ E T +VL C+ + +L+ G+ VH
Sbjct: 66 VTDYNAKILHFCQLGDLENAMELVCMCQKS---ELETKTYGSVLQLCAGLKSLTDGKKVH 122
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
S I + + V +G +++ Y CGD+ +VF+ + K++ W+ ++S A G
Sbjct: 123 SIIKSN-SVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181
Query: 126 RQALQLFSLMI---INGVFP-------------DDVTFIALISACSHGGLVDQGLILFKA 169
++++ LF +M+ I G P D +++ ++IS GL ++GL ++K
Sbjct: 182 KESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQ 241
Query: 170 M 170
M
Sbjct: 242 M 242
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +D+VSWT MI GY G+ EA++ F EM + EP+E + +++L ACS L
Sbjct: 493 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM-RDAGIEPDEVSFISILYACSHSGLLEQ 551
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISG 118
G + +++ ++++ + G++ A + L D W ++ G
Sbjct: 552 GWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 610
>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
Length = 869
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 177/291 (60%), Gaps = 7/291 (2%)
Query: 1 MPKRDVVSWTTMIGGYA--ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP++DVVSW++MI G+ R F EA+ F+ M + +PN T + L+AC++ AL
Sbjct: 458 MPEKDVVSWSSMIAGFCFNHRNF--EALYYFRHM--LADVKPNSVTFIAALAACAATGAL 513
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H+++ R ++ + NA+I++YVKCG G A F KD++SW+ +I+G
Sbjct: 514 RSGKEIHAHV-LRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAG 572
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G G AL F+ M+ G PD+VTF+AL+ ACS GG+V +G LF +M+ Y IVP
Sbjct: 573 FVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVP 632
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HYAC+VD+ R G L EA FI EMPI + +VWGALLN CRIHR+ E+ + + +
Sbjct: 633 NLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYV 692
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G L+ + +A A W+ ++R +R GL +GCSW+EV
Sbjct: 693 LELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVK 743
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/282 (28%), Positives = 138/282 (48%), Gaps = 14/282 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D +SW MI G+ E G C + +F M + E +PN T+ +V A +S ++F
Sbjct: 256 MAVMDCISWNAMIAGHFENGECNAGLELFLTMLQ-DEVQPNLMTITSVTVASGLLSDITF 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++ + + N++I MY G +G A VF+ + +D +SW+ +ISG
Sbjct: 315 AKEMHG-LAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYE 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEI 176
NG +AL++++LM +N V PDD+T + ++AC+ G +D G+ L + + Y +
Sbjct: 374 KNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVV 433
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIR 235
V +++MY ++ +++A + MP E + W +++ C HRN E R
Sbjct: 434 VTNA-----LLEMYAKSKRIDKAIEVFKCMP-EKDVVSWSSMIAGFCFNHRNFEALYYFR 487
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
L + K SV TF A +I + R G+
Sbjct: 488 HMLADVKPNSV-TFIAALAACAATGALRSGKEIHAHVLRCGI 528
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 18/228 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW M+GGY + G EEA+ ++ M P+ T VL +C +
Sbjct: 155 MPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG-VRPDVYTFPCVLRSCGGVPDWRM 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R+ + V NA++ MY KCGDV A +VF+ +A D ISW+ +I+G
Sbjct: 214 GREVHAHV-LRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHF 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-------QGLILFKAMSTV 173
NG L+LF M+ + V P+ +T ++ A G L D GL + + +T
Sbjct: 273 ENGECNAGLELFLTMLQDEVQPNLMTITSVTVAS--GLLSDITFAKEMHGLAVKRGFAT- 329
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ MY G++ +A M S W A+++
Sbjct: 330 -----DVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMS-WTAMISG 371
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
+E + E P+E V + C A+ G ++ R+ L GNA+++M V+
Sbjct: 85 LESSAEP-PDEDAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRL-GNAMLSMLVRF 142
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G+ A +VF + +D+ SW+ ++ G G +AL L+ M+ GV PD TF ++
Sbjct: 143 GETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVL 202
Query: 152 SACSHGGLVD 161
+C GG+ D
Sbjct: 203 RSC--GGVPD 210
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 189/294 (64%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV+WT MI GY + G EA+++F+ M + PN TL +LS SS+++LS
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSVASSLASLSH 431
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISG 118
G+ +H S + + SVS V NA+I MY K G++ A + F+++ +D +SW+++I
Sbjct: 432 GKQIHGSAVKSGEIYSVS--VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIA 489
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G +AL+LF M++ G+ PD +T++ + SAC+H GLV+QG F M V +I+P
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP 549
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HYAC+VD++GRAGLL+EA+ FI +MPIE + WG+LL+ACR+H+N ++ + L
Sbjct: 550 TLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL 609
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G ++ ++N ++ +WE+A KIR ++ +KK+ G SWIEV +
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 37/238 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD VSWTTMI GY G +A+ V +M K + EP + TL NVL++ ++ +
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK-EGIEPTQFTLTNVLASVAATRCMET 164
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD----------------------VGIAI 98
G+ VHS+I + L + V N+++NMY KCGD + + +
Sbjct: 165 GKKVHSFI-VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHM 223
Query: 99 QV---------FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFI 148
QV F +A +D+++W+++ISG G +AL +FS M+ + + PD T
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283
Query: 149 ALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++SAC++ L I ++T ++I + ++ MY R G +E A I +
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQ 339
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 40/288 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+W +MI G+ +RG+ A+ +F +M + P+ TL +VLSAC+++ L
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC----------------------------- 91
G+ +HS+I T +S +V NA+I+MY +C
Sbjct: 298 GKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GD+ A +F L +D+++W+ +I G +G +A+ LF M+ G P+ T
Sbjct: 357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
A++S S + G + + EI + A ++ MY +AG + A +
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA-LITMYAKAGNITSASRAFDLIR 475
Query: 208 IEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVS-VGTFA 250
E + W +++ A H + E+F+ + E + ++ VG F+
Sbjct: 476 CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N V++ Y K GD+ + F+ L +D +SW+T+I G G +A+++ M+ G+
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 142 PDDVTFIALISACS 155
P T ++++ +
Sbjct: 144 PTQFTLTNVLASVA 157
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 179/289 (61%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K VV+W+ MIGGY G +AV +F+EM+ + P+E T++ VL+A + + AL
Sbjct: 195 MDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASG-VRPDEVTVIGVLAAAADLGALEL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V ++ R + S + NA+I+ KCGDV A+ VF + + ++SW++VI LA
Sbjct: 254 ARWVGRFVE-REGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVIDALA 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M G G++A+ +F M GV PDDV FI +++ACSH G+VD+G F +M Y I P+
Sbjct: 313 MEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKI 372
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM+GRAG++E A FI MP++ +W L+ ACR H E+ + I + L+N
Sbjct: 373 EHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLN 432
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + ++SN +A RW++ ++IR E+ + G+KK GCS +E++
Sbjct: 433 EYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELD 481
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 40 PNEATLVNVLSACSSISALS-FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD--VGI 96
PN+ T +L AC+++ G H+ + ++ + V N +I+MY G +G
Sbjct: 129 PNKFTFPFLLKACAALPGFPGVGLQAHA-AALKFGFATDQYVSNTLIHMYSCFGGEFLGD 187
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
A VF+ + +++WS +I G G A+ LF M +GV PD+VT I +
Sbjct: 188 ARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGV 241
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 180/293 (61%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++++ SW MI GY + EA+ +F EM+ T EP+E T+V+VL A + + AL
Sbjct: 242 MPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDL 301
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH ++ R L + VG A+I+MY KCG++ + VF+ + K+ SW+ +I+ A
Sbjct: 302 GGWVHRFVR-RKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFA 360
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG ++AL LF M G P+++T I ++SAC+H GLV++G FKAM + + P+
Sbjct: 361 INGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKI 419
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE + MP EA + + L AC ++ + + +E +
Sbjct: 420 EHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIK 479
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + ++ N +A RW++A++++ +RR G+KK+ GCS IEV+ ++
Sbjct: 480 MEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVW 532
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VSWT +IGGY G + A +F +M E + A ++ A + +
Sbjct: 149 MIDRSQVSWTALIGGYVRSGDMDNAGKLFDQM-----IEKDSAAFNTMIDAYVKLGDMCS 203
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R +S + +I Y G++ A +F+ + K++ SW+ +ISG
Sbjct: 204 ARKLFDEMPERSVVSWT-----IMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYR 258
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N +AL+LF M + PD+VT ++++ A + G +D G + + + ++
Sbjct: 259 QNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRR-KKLDRA 317
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G + ++ MP E E + W AL+NA I+
Sbjct: 318 TNVGTALIDMYAKCGEIVKSRGVFDNMP-EKETASWNALINAFAIN 362
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 103/237 (43%), Gaps = 18/237 (7%)
Query: 2 PKRD-VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P RD +MI Y E+ ++++++ + P+ T + +C+ A+
Sbjct: 47 PHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWE 106
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +HS++ + A+++MY K G + A ++F+ + + +SW+ +I G
Sbjct: 107 GQEIHSHV-VAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEMIDRSQVSWTALIGGYV 165
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A +LF MI D F +I A G + LF M P+
Sbjct: 166 RSGDMDNAGKLFDQMIEK----DSAAFNTMIDAYVKLGDMCSARKLFDEM-------PER 214
Query: 181 QHYACVVDMYGRA--GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ + +YG + G L+ A + MP E W A+++ R +N + ++ ++
Sbjct: 215 SVVSWTIMIYGYSSNGNLDSARSLFDAMP-EKNLFSWNAMISGYR--QNKQPYEALK 268
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 182/292 (62%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VSW++MI +A+ GF EA+++FQ M+ +P+E +++V+SA S + L
Sbjct: 145 MPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLEL 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +IS R L + +G A+++M+ +CG + +++VF+ + +++++W+ +I+GLA
Sbjct: 205 GKWIRGFIS-RNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLA 263
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL++F M +G PD VTF ++ ACSHGGLV +G +F+++ Y + P
Sbjct: 264 VHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLP 323
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL EA F+ MPI +W LL AC H E+ + +++++
Sbjct: 324 EHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINE 383
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN + G RW + +R+ +R + KK GCS I VN I
Sbjct: 384 LDSYHDGDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLI 435
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 118/251 (47%), Gaps = 14/251 (5%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ T VL AC+ + G +HS + +D V V N +I+ Y CG + A+
Sbjct: 85 PDHFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDV--YVQNGLIHFYGCCGFLDFAL 139
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHG 157
+ F + +D++SWS++I+ A NG G +AL LF M ++ V PD+V ++++SA S
Sbjct: 140 KAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G ++ G + + + + +VDM+ R G +EE+ EM E W A
Sbjct: 200 GDLELGKWI-RGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMG-ERNVLTWTA 257
Query: 218 LLNACRIH-RNDE---MFDPIRQELVNKKGVS-VGTFALMSNTFAGADRWEDANKIRDEI 272
L+N +H R+ E MF +R V+ G S+ ++ W IR+E
Sbjct: 258 LINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEY 317
Query: 273 RRMGLKKKTGC 283
L + GC
Sbjct: 318 GMEPLPEHYGC 328
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 188/294 (63%), Gaps = 4/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RDVVS T +I GYA+ G EEA+ +F +++ + N T ++L+A S ++AL
Sbjct: 172 LPERDVVSCTAIISGYAQLGLDEEALELFCRLQR-EGMSSNYVTYASLLTALSGLAALDH 230
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS++ R +L ++ N++I+MY KCG++ A ++FN + + +ISW+ ++ G +
Sbjct: 231 GKQVHSHV-LRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYS 289
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVP 178
+G G + ++LF LM N V PD VTF+A++S CSHGGL D+GL +F + M+ EI
Sbjct: 290 KHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEA 349
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+HY CV+D+ GRAG +EEA I++MP E ++WG+LL ACR+H N + + + L
Sbjct: 350 GIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRL 409
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G + ++SN +A A RWED +R+ + + K+ G SWIE++ +I
Sbjct: 410 LEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTI 463
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 142/268 (52%), Gaps = 19/268 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSWT MI GY++RGF EA+ +F +M ++ + EPNE T VLS+C+ S
Sbjct: 71 MRERNVVSWTAMISGYSQRGFASEALHLFVQMLRS-DTEPNEFTFATVLSSCTGFSGFEL 129
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +HS+I R Y+ + VG+++++MY K G + A VF L +D++S + +ISG
Sbjct: 130 GRQIHSHIFKRNYENHI--FVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGY 187
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEI 176
A G +AL+LF + G+ + VT+ +L++A S +D G + + + +
Sbjct: 188 AQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYV 247
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFD 232
V Q ++DMY + G L A MP+ S W A+L H ++F
Sbjct: 248 VLQNS----LIDMYSKCGNLNYARKIFNNMPVRTVIS-WNAMLVGYSKHGKGIEVVKLFK 302
Query: 233 PIRQELVNK-KGVSVGTFALMSNTFAGA 259
+R+E NK K SV A++S G
Sbjct: 303 LMREE--NKVKPDSVTFLAVLSGCSHGG 328
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 48 VLSACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106
+L+ C + A+ GQ VH++ I T Y V + +I +Y KC +G A VF+ +
Sbjct: 16 LLNECVNKRAVREGQRVHAHMIKTCYLPPV--YLSTRLIILYTKCECLGCARHVFDEMRE 73
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
++++SW+ +ISG + G +AL LF M+ + P++ TF ++S+C+ G
Sbjct: 74 RNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCT-------GFSG 126
Query: 167 FKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEAFIREMP 207
F+ ++ + + + + ++DMY +AG + EA +P
Sbjct: 127 FELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLP 173
>gi|414875841|tpg|DAA52972.1| TPA: hypothetical protein ZEAMMB73_038558 [Zea mays]
Length = 641
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/289 (38%), Positives = 176/289 (60%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSW+ +IGG+A G E+A+ + ++M++ + PN TL VLSAC+ + AL GQ V
Sbjct: 312 NVVSWSAVIGGFASSGDMEQALQLCRQMQQ-QWLLPNAVTLATVLSACTQLLALRLGQEV 370
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + + L +LV N ++N Y KCG V A +VF+ + +D+ISW+++I +G
Sbjct: 371 HGH-TIKAALDRHSLVQNGLVNTYGKCGKVATARKVFDGMKSRDLISWNSMIGSYGAHGM 429
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL +F + + PD VTF+A++SACSH G V +G LF M ++I P +HY
Sbjct: 430 CDEALAMFQDLTRALIEPDGVTFVAVLSACSHTGRVAEGRRLFDQMVREHKISPTMEHYT 489
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ GRAGLL A I MP++ + VWGALLN+CRIH + + + +++ +
Sbjct: 490 CMVDLLGRAGLLRGACELIDTMPMKPDLCVWGALLNSCRIHGDAALAEAAMAKVLQAETA 549
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L++N +A W+D+ ++R ++ GL+K G SWIEV +F
Sbjct: 550 TTGNRTLITNLYAACGMWDDSKRVRMTMKEAGLRKNPGQSWIEVRNKVF 598
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW +MIG Y G C+EA+++FQ++ + EP+ T V VLSACS ++
Sbjct: 409 MKSRDLISWNSMIGSYGAHGMCDEALAMFQDLTRAL-IEPDGVTFVAVLSACSHTGRVAE 467
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G+ + + + +S + ++++ + G + A ++ + + K D+ W +++
Sbjct: 468 GRRLFDQMVREHKISPTMEHYTCMVDLLGRAGLLRGACELIDTMPMKPDLCVWGALLNSC 527
Query: 120 AMNG 123
++G
Sbjct: 528 RIHG 531
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISALS 59
P V W ++ + A+++++ M A PN TL L A S ++A+
Sbjct: 32 PTDSAVPWNKLLRDHIAGSRPGLALALYRLMRALSPALPNSYTLPLALRAAPSWRLAAVV 91
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISG 118
G +H + T D V V+ Y + G A VF+ L + +SW+T+IS
Sbjct: 92 HGHALHLGLHTHPD------VAGQVLAAYARLGRAAEARCVFDALPLRRSTLSWNTLISA 145
Query: 119 LAMNGCGRQALQL-FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ GC A + F+ M+ G PD VT+ AL+SA + G + L L AM
Sbjct: 146 YSA-GCDPDAAWVAFARMVAAGARPDAVTWTALLSAHARCGRHPEALRLLGAM 197
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 177/287 (61%), Gaps = 4/287 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++DVVSW T+I GY +G +EA+ V EM + P+EAT+V++LS C+++ +L G
Sbjct: 221 PEKDVVSWNTIITGYTAKGLLKEALEVLDEM-RCVGLMPDEATIVSLLSCCANLGSLGTG 279
Query: 62 QYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +HS ++ R +S+ L GNA+++MY KCGDV A++VF+ + +D+ +W+++I GLA
Sbjct: 280 RMIHSLHLEGRPCISI--LPGNALVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLA 337
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G Q++Q F+ M+ G+ P++++F+ ++ ACSH GLV+ G F M Y I P
Sbjct: 338 FHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNA 397
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VDM GR+GLL+EA A + M E +W LL ACRIH + + R+ L+
Sbjct: 398 RHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARERLLK 457
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ G + L+S +A D W +R + G++K G + +E
Sbjct: 458 MNEDASGDYVLLSGIYASCDEWFGVETVRGSMDERGIRKVAGYAQVE 504
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 109/290 (37%), Gaps = 72/290 (24%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ M+ GYA A +++ +E + +P+ T +L AC+ + G V
Sbjct: 61 DLFMHNVMVRGYAHSAAPAAAFVLYRRIEAAR-LKPDSFTFCYLLRACAGLPGSCAGYQV 119
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGD------------------------------- 93
H + + V NA+INM+ KCGD
Sbjct: 120 HGAV-VKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAGERDVVARSAVIAGHAAKGE 178
Query: 94 VGIAIQVFNMLAYKDMI-------------------------------SWSTVISGLAMN 122
+ IA Q+F+ +KD++ SW+T+I+G
Sbjct: 179 LDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAK 238
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM---STVYEIVPQ 179
G ++AL++ M G+ PD+ T ++L+S C++ G + G ++ I+P
Sbjct: 239 GLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPG 298
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+V MY + G ++ A M W+ W +++ H E
Sbjct: 299 NA----LVSMYAKCGDVQAAMEVFSRMKERDVWT-WNSIIGGLAFHGQAE 343
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 4/125 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV +W ++IGG A G E++V F +M PNE + + VL ACS +
Sbjct: 321 MKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLC-PNEISFLCVLGACSHAGLVED 379
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCG--DVGIAIQVFNMLAYKDMISWSTVISG 118
GQ S + RY + + + +++M + G D AI V +M ++ W T++
Sbjct: 380 GQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAI-VSSMRCEPAVVIWRTLLGA 438
Query: 119 LAMNG 123
++G
Sbjct: 439 CRIHG 443
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 185/293 (63%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D++SWTTMI Y++ ++A++++ EM + P+E T+ V SAC+ I AL
Sbjct: 261 MPTKDIISWTTMITCYSQNKQYQDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALEL 319
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ ++ L++ +G+A+++MY KCG + +++ +F L K++ W+ VI GLA
Sbjct: 320 GKEIHHYVMSQ-GLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLA 378
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL++F++M + P+ VTFI+++SAC+H GLVD+G F +M+ Y+I P
Sbjct: 379 VHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDI 438
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM ++G L EA I+ M E +WGALLN C++H N E+ + ++L+
Sbjct: 439 RHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMI 498
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVNPSI 292
+ ++ G + L+ + +A W + IR ++ G++KK G SWIE+ +I
Sbjct: 499 LEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTI 551
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 123/301 (40%), Gaps = 82/301 (27%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +WT M+ A G + A +F+EM E N AT
Sbjct: 199 MCERDAFAWTAMLSALARVGDMDSARKLFEEM-----PERNTATW--------------- 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +I+ Y + G+V A +FN + KD+ISW+T+I+ +
Sbjct: 239 ---------------------NTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYS 277
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N + AL ++S M +NG+ PD+VT + SAC+H G ++ G +
Sbjct: 278 QNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELG--------------KEI 323
Query: 181 QHY-------------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
HY + +VDMY + G L+ + ++ + W A++ +H
Sbjct: 324 HHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL-TDKNLYCWNAVIEGLAVHGY 382
Query: 228 DE----MFDPIRQELVNKKGVSVGTFALMSNTFA-----GADRWEDANK---IRDEIRRM 275
E MF + +E + GV+ + L + T A G R+ + IR +IR
Sbjct: 383 AEKALRMFAIMEREKIMPNGVTFISI-LSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHY 441
Query: 276 G 276
G
Sbjct: 442 G 442
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 10/206 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +V + MI G+ G+ A+ + M + P T +++ AC+ + A+
Sbjct: 97 MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 156
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH +I + V A+++ Y K + A +VF+ + +D +W+ ++S LA
Sbjct: 157 GQMVHCHIWKK-GFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALA 215
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A +LF M + T+ +I + G V+ +LF M T +I+ T
Sbjct: 216 RVGDMDSARKLFEEMPER----NTATWNTMIDGYTRLGNVESAELLFNQMPT-KDIISWT 270
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
C Y + ++A A EM
Sbjct: 271 TMITC----YSQNKQYQDALAIYSEM 292
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 176/290 (60%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+V W+ MI GYA G EA+ +F EM K P+ +V LS+C+S+ AL
Sbjct: 266 MVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVN-VRPDCYAMVGALSSCASLGALEL 324
Query: 61 GQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + ++ Y+ +SN ++G ++I+ Y KCG + A+ V+ M+ KD + ++ VISGL
Sbjct: 325 GNWAKGLMN--YEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGL 382
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM G A +F M G+ P++ TF+ L+ C+H GLVD G F +MS + + P
Sbjct: 383 AMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPT 442
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ RAG L+EA I+ MP++A VWG+LL CR+HR ++ + + ++L+
Sbjct: 443 IEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQLI 502
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+SN ++ + RW++A KIR + G++K G SW+EV+
Sbjct: 503 ELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 4/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VVSWT MI G E G EAV +F+ + ++ P+ +V VL AC+ + L
Sbjct: 165 MVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESG-LRPDGFVIVRVLRACARLGDLES 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ + LS + V ++++MY KCG + A VF+ + KD++ WS +I G A
Sbjct: 224 GRWIDRCMR-ECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYA 282
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG R+A++LF M V PD + +S+C+ G ++ G K + E +
Sbjct: 283 SNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELG-NWAKGLMNYEEFLSNP 341
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D Y + G +EEA + +M E + V+ A+++
Sbjct: 342 VLGTSLIDFYAKCGSMEEALG-VYKMMKEKDRVVFNAVISG 381
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 6/214 (2%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
+ TMI G + AV ++ M K P+ T VL AC+ ++ G +HS +
Sbjct: 72 YNTMIRGMVSKDRFNNAVHLYASMHKAAIV-PDSFTFSFVLKACARLNLFHLGVMIHSLV 130
Query: 69 -STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
T +D V V V+ Y KCG + A +VF+ + K+++SW+ +I G G R+
Sbjct: 131 FKTGFDCDV--FVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFRE 188
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187
A+ LF ++ +G+ PD + ++ AC+ G ++ G + + M + +V
Sbjct: 189 AVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMREC-GLSRNVFVATSLV 247
Query: 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
DMY + G +EEA F+ + +E + W A++
Sbjct: 248 DMYTKCGSMEEAR-FVFDGMVEKDIVCWSAMIQG 280
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 168/287 (58%), Gaps = 2/287 (0%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
++SW M+ Y EAV +F M+K EP+ TL VL +C +SALS G+ +H
Sbjct: 92 LISWNAMLAVYTNNEMHVEAVELFMRMQKDG-IEPDAVTLATVLPSCGEVSALSLGKRIH 150
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
I R + S L+ NA+++MY CG + A VF+ + +D++SW+++IS +G G
Sbjct: 151 EVIKRR-RMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 209
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC 185
R+A+ LF M G+ PD + F+A+++ACSH GL+D G F +M++ + I P+ +HYAC
Sbjct: 210 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 269
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245
+VD+ GRAG + EA FI MPI+ VWGALL ACRIH N ++ L+
Sbjct: 270 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 329
Query: 246 VGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G + L+SN +A A RW D + +R + G+KK G S E+ S+
Sbjct: 330 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSV 376
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 90/212 (42%), Gaps = 47/212 (22%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSW MI G+A G A+ VF+E+ + +P+ T+ ++L +
Sbjct: 18 MQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS--------- 68
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+G A + D+ + VF+ + + +ISW+ +++
Sbjct: 69 -------------------MGKARVE------DIALLKGVFDEMRFTGLISWNAMLAVYT 103
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A++LF M +G+ PD VT ++ +C + G ++E++ +
Sbjct: 104 NNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLG-------KRIHEVIKRR 156
Query: 181 QHYA------CVVDMYGRAGLLEEAEAFIREM 206
+ + ++DMY G L+EA M
Sbjct: 157 RMCSSMLLENALMDMYANCGCLKEARDVFDSM 188
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDV 145
MY +CG A Q+F + Y+D++SW+ +ISG A G +A+ +F L+ + PD
Sbjct: 1 MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60
Query: 146 TFIALISACSHG---------GLVDQ----GLILFKAMSTVY 174
T +++ + G+ D+ GLI + AM VY
Sbjct: 61 TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVY 102
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 183/291 (62%), Gaps = 3/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D V+W +I GYA+ G +EA+S+F M + A P++ TLV VLSAC+++ AL G
Sbjct: 297 KDNVAWNALITGYAQNGMSKEAISLFHSMRQAG-ARPDKITLVGVLSACAAVGALELGTE 355
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ Y R S + VG A+++MY KCGD+ AIQVF L K+ SW+ +I GLA NG
Sbjct: 356 LDRYALQRGFYS-NVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEASWNALICGLAFNG 414
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G++A++ F LM G+ PDD+TFI ++SAC H GL+ G F ++++ ++I+P+ +H
Sbjct: 415 RGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKDGRRWFDSLTSEFQIIPKIEH 474
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+ RAG LEEA FI ++P + + + GALL ACR +N E+ + +++ +
Sbjct: 475 YSCMVDLLARAGHLEEAWDFIEKIPGKPDAVMLGALLAACRKCKNVEVSVRVINKIMLLE 534
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + + S +A +DR +D+ ++R +R G+ K GCSWIEV+ +
Sbjct: 535 PSNSWNYVVSSKIYASSDRLDDSARMRGLMRERGVSKIPGCSWIEVSGRVL 585
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 136/247 (55%), Gaps = 18/247 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+RDVVSW +MI Y G ++A +F+ M PN T+ VL+AC L+ G+
Sbjct: 194 RRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGR 253
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
++ ++ + + V +LVG+A++ MY KCG++ A +VF+ +A+KD ++W+ +I+G A N
Sbjct: 254 WLEEWVKS-VGMEVGSLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQN 312
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G ++A+ LF M G PD +T + ++SAC+ G ++ G L + Y + Q
Sbjct: 313 GMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVGALELGTELDR-----YAL--QRGF 365
Query: 183 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
Y+ V VDMY + G L A ++P + E S W AL+ C + N + IRQ
Sbjct: 366 YSNVYVGTALVDMYSKCGDLTRAIQVFEKLPCKNEAS-WNALI--CGLAFNGRGQEAIRQ 422
Query: 237 -ELVNKK 242
EL+ K+
Sbjct: 423 FELMRKQ 429
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++ SW +I G A G +EA+ F+ M K + P++ T + VLSAC L
Sbjct: 395 LPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAGLLKD 454
Query: 61 GQ 62
G+
Sbjct: 455 GR 456
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
++++ MY G A +VF+ + +D++SW+++I G A ++F M+ G
Sbjct: 170 HSLVTMYSNLGRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAV 229
Query: 142 PDD 144
P +
Sbjct: 230 PPN 232
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 177/287 (61%), Gaps = 4/287 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D +W +IGG E G EEAV +F++M+K +PNE T+ ++L ACS L G+
Sbjct: 363 RADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITISSILPACSFSENLRMGK 421
Query: 63 YVHSYISTRYDLSVSNLVGN-AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H Y+ + V +L A++ MY KCGD+ ++ VF+M+ KD+++W+T+I AM
Sbjct: 422 EIHCYVFRHW--KVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 479
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL LF M+++ V P+ VTF ++S CSH LV++G+ +F +M + + P
Sbjct: 480 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN 539
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY+CVVD+Y RAG L EA FI+ MP+E S WGALL ACR+++N E+ ++L
Sbjct: 540 HYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEI 599
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + + N A W +A+++R ++ G+ K GCSW++V
Sbjct: 600 EPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 646
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSWT++ Y + GF + + VF+EM + +PN T+ ++L AC+ + L G+
Sbjct: 228 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKE 286
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + R+ + V+ V +A++++Y KC V A VF+++ ++D++SW+ V++ N
Sbjct: 287 IHGF-AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 345
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ LF M +GV D+ T+ A+I C G ++ + +F+ M
Sbjct: 346 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 392
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 126/274 (45%), Gaps = 41/274 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-SISALS 59
+P+ D + +T+I G EA+ ++ +++ + +P+ + AC+ S AL
Sbjct: 124 IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE-RGIKPDMPVFLAAAKACAVSGDALR 182
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH +TR + VGNA+I+ Y KC V A +VF+ L +D++SW+++ S
Sbjct: 183 VKE-VHDD-ATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 240
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLI--L 166
G R+ + +F M +GV P+ +T +++ AC+ HG V G++ L
Sbjct: 241 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 300
Query: 167 F----------KAMST-----VYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMP-- 207
F K +S V++++P + V+ Y + E+ + +M
Sbjct: 301 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 360
Query: 208 -IEAEWSVWGALLNAC----RIHRNDEMFDPIRQ 236
+ A+ + W A++ C R EMF +++
Sbjct: 361 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 394
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
++ + +G +I + + GD A Q+F+ + D + ST+IS L +G +A++++S
Sbjct: 95 NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 154
Query: 135 MIINGVFPDDVTFIALISACSHGG 158
+ G+ PD F+A AC+ G
Sbjct: 155 LQERGIKPDMPVFLAAAKACAVSG 178
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV+W TMI A G +EA+ +F +M ++ +PN T VLS CS +
Sbjct: 462 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR-VQPNSVTFTGVLSGCSHSRLVEE 520
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
G + + + + + + V+++Y + G + A +
Sbjct: 521 GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYK 559
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/292 (38%), Positives = 181/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D VSW+TMI G + A++VF M + + P+E T+V+V+SAC+++SAL
Sbjct: 358 MPDKDNVSWSTMISGCVQNNQSSHALTVFDNM-RAQGVRPDEVTIVSVISACTNLSALEK 416
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + ++ ++G ++I+MY+KCG + A+ VFN++ K W+ VI GLA
Sbjct: 417 GKSVHDYVR-QNKCYITLVLGTSLIDMYMKCGYLEAAMDVFNIMEEKGAPCWNAVIVGLA 475
Query: 121 MNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
MNG ++L++FS M + P+++TF ++SAC H GLV++G FK M Y+IVP
Sbjct: 476 MNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSACRHAGLVEEGRHFFKLMQHKYQIVPN 535
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAG ++EAE I MP+ + WGALL AC H +E+ + + ++LV
Sbjct: 536 IRHYGCMVDLLGRAGYVKEAEDLIESMPMSPDVPAWGALLGACWKHGENEVGERVGRKLV 595
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
N G ++SN +A W+ N +RD +++ + K +G S +E++ S
Sbjct: 596 NLDPRHDGFQTMLSNIYAKEGMWQSVNDLRDSMKQRHVPKVSGYSVVEMSHS 647
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 48/234 (20%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQ 62
RD+ +WT MI + EA+ +F M + E P +EA +V+V++AC+ + G+
Sbjct: 229 RDIFTWTAMISCFERNDMFAEALHMFSCMRR--EMWPVDEALMVSVVAACAQSEVIRNGE 286
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKC------------------------------- 91
H + S+ N + N +I+MY C
Sbjct: 287 LCHGLVIRAGLCSLLN-IQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKN 345
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A+ +F+ + KD +SWST+ISG N AL +F M GV PD+VT +++I
Sbjct: 346 GHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVI 405
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEA 199
SAC++ +++G +V++ V Q + Y ++DMY + G LE A
Sbjct: 406 SACTNLSALEKG-------KSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLEAA 452
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 78/280 (27%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P D VSW T++ Y G ++AV VF M K
Sbjct: 165 PVWDAVSWNTILAAYVHAGDVDQAVGVFARMPK--------------------------- 197
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
R +VS++V +++ + G V A VF+ +D+ +W+ +IS
Sbjct: 198 ---------RNATAVSSMV-----SLFGRRGMVEEARGVFDEAECRDIFTWTAMISCFER 243
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-----GGLVDQGLILFKAMSTVYEI 176
N +AL +FS M D+ +++++AC+ G + GL++ + ++ I
Sbjct: 244 NDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGELCHGLVIRAGLCSLLNI 303
Query: 177 VPQTQH-YACVVDM------------------------YGRAGLLEEAEAFIREMPIEAE 211
H Y+C +D+ Y + G +E A MP +
Sbjct: 304 QNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDN 363
Query: 212 WSVWGALLNACRIHRNDE-----MFDPIRQELVNKKGVSV 246
S W +++ C + N +FD +R + V V++
Sbjct: 364 VS-WSTMISGC-VQNNQSSHALTVFDNMRAQGVRPDEVTI 401
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 54/209 (25%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97
A P+ T + +AC++ +S G+ V S+ + R+ + NA+++MY CG + A
Sbjct: 99 ASPDTYTHPILAAACAARRDVSEGRQVQSH-AIRHGFGDDLYLRNALMHMYSVCGCLWDA 157
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157
+VF+ D +SW+T+ ++A H
Sbjct: 158 RRVFDAGPVWDAVSWNTI-----------------------------------LAAYVHA 182
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVW 215
G VDQ + +F M P+ A +V ++GR G++EEA E ++ W
Sbjct: 183 GDVDQAVGVFARM-------PKRNATAVSSMVSLFGRRGMVEEARGVFDEAECRDIFT-W 234
Query: 216 GALLNACRIHRND------EMFDPIRQEL 238
A+++ RND MF +R+E+
Sbjct: 235 TAMISC--FERNDMFAEALHMFSCMRREM 261
>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 178/291 (61%), Gaps = 8/291 (2%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC-SSISALSFGQ 62
R + W MI GYA G E+A+ +F EM K PN T+ +V+ AC S++A++ G+
Sbjct: 279 RRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGK 338
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+Y + R L+ VG+A+++MY KCG + ++ +VFN + K++I+W+ +I M+
Sbjct: 339 EIHAY-AIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMH 397
Query: 123 GCGRQALQLFSLMIING-----VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177
G G +AL+LF M+ P++VTFI + +ACSH GL+ +GL LF M + +
Sbjct: 398 GKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVE 457
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALLNACRIHRNDEMFDPIRQ 236
P + HYACVVD+ GRAG LEEA + MP E + W +LL ACRIH+N E+ + +
Sbjct: 458 PTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAK 517
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
L++ + + L+SN ++ A W A ++R +R+MG+KK+ GCSWIE
Sbjct: 518 NLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 568
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 119/241 (49%), Gaps = 3/241 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+VSW TMI +++ EA++ F+ M + E + T+ +VL ACS + L G+
Sbjct: 177 RDMVSWNTMISSFSQSDRFSEALAFFRLM-VLEGVELDGVTIASVLPACSHLERLDVGKE 235
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y+ DL ++ VG+A+++MY C V +VF+ + + + W+ +ISG A NG
Sbjct: 236 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 295
Query: 124 CGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
+AL LF MI + G+ P+ T +++ AC H A + +
Sbjct: 296 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITV 355
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
+ +VDMY + G L + EMP W L+ AC +H E + + +V +
Sbjct: 356 GSALVDMYAKCGCLNLSRRVFNEMP-NKNVITWNVLIMACGMHGKGEEALELFKNMVAEA 414
Query: 243 G 243
G
Sbjct: 415 G 415
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P R SW + EA+S + EM A P+ VL A S + L G
Sbjct: 53 PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--------------------QVF 101
+ +H+ S S V N ++NMY KCG +G +F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171
Query: 102 NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+DM+SW+T+IS + + +AL F LM++ GV D VT +++ ACSH +D
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD 231
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMY 190
G + + +++ + + +VDMY
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMY 260
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 10/124 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM----EKTKEAEPNEATLVNVLSACSSIS 56
MP ++V++W +I G EEA+ +F+ M + EA+PNE T + V +ACS
Sbjct: 379 MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSG 438
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVGIAIQVFNMLA--YKDMISW 112
+S G ++ + ++D V + V+++ + G + A ++ N + + + +W
Sbjct: 439 LISEG--LNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAW 496
Query: 113 STVI 116
S+++
Sbjct: 497 SSLL 500
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 180/286 (62%), Gaps = 3/286 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++DVV+W+ +I GY+ EAV +F EM + +P+E +V+++SACS +
Sbjct: 260 PEKDVVAWSALISGYSRNEQPNEAVKIFFEM-VSMNVKPDEFIMVSLMSACSQLGNSDLA 318
Query: 62 QYVHSYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
++V SY+S T D ++++ A+I+M+ KCG++ A+++F + +D+I ++I GL+
Sbjct: 319 KWVDSYLSQTSIDTRQAHVLA-ALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLS 377
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G +A++LF+ M+ G+ PD V F +++ACS GGL++ G F M Y +VP
Sbjct: 378 IHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNKYSVVPSP 437
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD+ RAG L A ++ MP++ WGALL AC++H + E+ + + L+
Sbjct: 438 NHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREEVANRLLE 497
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
+ G++ L+SN +A A++W D + +RDE++ G++K GCS+I
Sbjct: 498 LEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 10/207 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+VVSWT M+ GYA G E A VF+ M E N + ++S LS
Sbjct: 166 IPERNVVSWTAMVAGYASVGDLENAKRVFERM-----PERNLPSWNAMISGLGKAGDLSG 220
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + R +S + +I+ Y K GD+ A +F+ KD+++WS +ISG +
Sbjct: 221 ARKVFDEMVERNVVSFT-----VMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYS 275
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A+++F M+ V PD+ ++L+SACS G D + +S Q
Sbjct: 276 RNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQA 335
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP 207
A ++DM+ + G +E+A ++MP
Sbjct: 336 HVLAALIDMHAKCGNMEKAVKLFQDMP 362
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
+ S+F M++++ A ++ T ++ CS+ L G+ VH + R +S VG++
Sbjct: 87 DTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGS-AIRCGVSDDVYVGSS 145
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143
+I+ Y KC ++ A +VF+ + ++++SW+ +++G A G A ++F M +
Sbjct: 146 LISFYGKCKEILSARKVFDEIPERNVVSWTAMVAGYASVGDLENAKRVFERMPERNL--- 202
Query: 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203
++ A+IS G + +F M + + ++D Y + G + A A
Sbjct: 203 -PSWNAMISGLGKAGDLSGARKVFDEM-----VERNVVSFTVMIDGYAKVGDMASARALF 256
Query: 204 REMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
E P E + W AL++ RN++ + ++
Sbjct: 257 DEAP-EKDVVAWSALISG--YSRNEQPNEAVK 285
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 185/293 (63%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D++SWTTMI Y++ ++A++++ EM + P+E T+ V SAC+ I AL
Sbjct: 358 MPTKDIISWTTMITCYSQNKQYQDALAIYSEM-RLNGIIPDEVTMSTVASACAHIGALEL 416
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ ++ L++ +G+A+++MY KCG + +++ +F L K++ W+ VI GLA
Sbjct: 417 GKEIHHYVMSQ-GLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLA 475
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +AL++F++M + P+ VTFI+++SAC+H GLVD+G F +M+ Y+I P
Sbjct: 476 VHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDI 535
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM ++G L EA I+ M E +WGALLN C++H N E+ + ++L+
Sbjct: 536 RHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMI 595
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK-TGCSWIEVNPSI 292
+ ++ G + L+ + +A W + IR ++ G++KK G SWIE+ +I
Sbjct: 596 LEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTI 648
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 123/301 (40%), Gaps = 82/301 (27%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +WT M+ A G + A +F+EM E N AT
Sbjct: 296 MCERDAFAWTAMVSALARVGDMDSARKLFEEM-----PERNTATW--------------- 335
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
N +I+ Y + G+V A +FN + KD+ISW+T+I+ +
Sbjct: 336 ---------------------NTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYS 374
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N + AL ++S M +NG+ PD+VT + SAC+H G ++ G +
Sbjct: 375 QNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELG--------------KEI 420
Query: 181 QHY-------------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN 227
HY + +VDMY + G L+ + ++ + W A++ +H
Sbjct: 421 HHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKL-TDKNLYCWNAVIEGLAVHGY 479
Query: 228 DE----MFDPIRQELVNKKGVSVGTFALMSNTFAGA-----DRWEDANK---IRDEIRRM 275
E MF + +E + GV+ + L + T AG R+ + IR +IR
Sbjct: 480 AEKALRMFAIMEREKIMPNGVTFISI-LSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHY 538
Query: 276 G 276
G
Sbjct: 539 G 539
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 10/206 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +V + MI G+ G+ A+ + M + P T +++ AC+ + A+
Sbjct: 194 MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 253
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ VH +I + V A+++ Y K + A +VF+ + +D +W+ ++S LA
Sbjct: 254 GQMVHCHIWKK-GFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALA 312
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G A +LF M + T+ +I + G V+ +LF M T +I+ T
Sbjct: 313 RVGDMDSARKLFEEMPER----NTATWNTMIDGYARLGNVESAELLFNQMPT-KDIISWT 367
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
C Y + ++A A EM
Sbjct: 368 TMITC----YSQNKQYQDALAIYSEM 389
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 175/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW MI GYA+ G + + M K + +P+ T++++L AC ++SAL
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSM-KVEGFQPDRVTIISILEACGALSALER 536
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + + L +V ++I MY KCG+V A VF+ ++ +D ++W+ +++G
Sbjct: 537 GKLVHAE-AVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYG 595
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ LF M+ V P+++TF A+ISAC GLV +G +F+ M + + P
Sbjct: 596 QHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGK 655
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ GRAG L+EAE FI+ MP E + SVW ALL AC+ H N ++ + ++
Sbjct: 656 QHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILR 715
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + +SN +A A RW+D+ K+R + GLKK G S IE++ I
Sbjct: 716 LEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRI 767
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 124/253 (49%), Gaps = 36/253 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGF--CEEAVSVFQEMEKTKEAE--PNEATLVNVLSACSSIS 56
M KRDV+SW+ MI GYA+ G+ E VFQ +E+ + PN+ T +++L ACS
Sbjct: 341 MSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHG 400
Query: 57 ALSFGQYVHSYIST---RYDLSVSNLVGN---------------------------AVIN 86
AL G+ +H+ IS D S+ + N +++
Sbjct: 401 ALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLT 460
Query: 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146
MY+KCGD+ A +VF+ ++ ++++SW+ +I+G A +G + +L S M + G PD VT
Sbjct: 461 MYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVT 520
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
I+++ AC +++G L A + + T ++ MY + G + EA ++
Sbjct: 521 IISILEACGALSALERGK-LVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579
Query: 207 PIEAEWSVWGALL 219
+ W A+L
Sbjct: 580 S-NRDTVAWNAML 591
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 18/288 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVV+W++MI YA +A F+ M K EPN T +++L AC++ S L
Sbjct: 139 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM-KDANIEPNRITFLSILKACNNYSMLEK 197
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+ + + V A+I MY KCG++ +A ++F + ++++SW+ +I A
Sbjct: 198 AREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANA 256
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+ +A +L+ M+ G+ P+ VTF++L+++C+ +++G + S + E +T
Sbjct: 257 QHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGR---RIHSHISERGLET 313
Query: 181 QHYA--CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN--ACRIHRNDEMFDPIRQ 236
++ MY + +++A M S W A++ A +++ E D + Q
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMSKRDVIS-WSAMIAGYAQSGYQDKESLDEVFQ 372
Query: 237 --ELVNKKGVSVGTFALMSNTFA----GADRWEDANKIRDEIRRMGLK 278
E + ++GV MS A GA E +I EI ++G +
Sbjct: 373 LLERMRREGVFPNKVTFMSILKACSVHGA--LEQGRQIHAEISKVGFE 418
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 110/242 (45%), Gaps = 10/242 (4%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T ++ C+ + G+ VH + L++ +GN++IN Y K GDV QV
Sbjct: 77 NSNTYGCIIEHCAKLRRFEDGKMVHKQLD-ELGLAIDIYLGNSLINFYSKFGDVASVEQV 135
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F + +D+++WS++I+ A N +A F M + P+ +TF++++ AC++ ++
Sbjct: 136 FRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSML 195
Query: 161 DQGL---ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
++ + KA ++ T ++ MY + G + A ++M E W A
Sbjct: 196 EKAREIHTVVKASGMETDVAVAT----ALITMYSKCGEISLACEIFQKMK-ERNVVSWTA 250
Query: 218 LLNACRIHRN-DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276
++ A HR +E F+ + L + TF + N+ + +I I G
Sbjct: 251 IIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 310
Query: 277 LK 278
L+
Sbjct: 311 LE 312
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 180/290 (62%), Gaps = 4/290 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D +SW +I G+A+ G+CE+A+ VF +M + K E + T + +SA ++I+ + G+
Sbjct: 580 KDSISWNGLISGFAQSGYCEDALKVFAQMNRAK-LEASFFTFGSAVSAAANIANIKQGKQ 638
Query: 64 VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H+ I R +D + V NA+I Y KCG + A + F + K+ +SW+ +I+G + +
Sbjct: 639 IHAMIIKRGFDSDIE--VSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQH 696
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +A+ LF M G P+ VTF+ ++SACSH GLV +GL F++MS + +VP+ H
Sbjct: 697 GYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAH 756
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YACVVD+ RAG L A FI EMPIE + ++W LL+AC +H+N E+ + Q L+ +
Sbjct: 757 YACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELE 816
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
T+ L+SN +A + +W+ ++ R +R G+KK+ G SWIEV S+
Sbjct: 817 PEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSV 866
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D VS+ ++I G A++GF + A+ +F +M K +P+ T+ ++LSAC+S AL
Sbjct: 274 MQSKDEVSFNSLISGLAQQGFSDGALELFTKM-KRDYLKPDCVTVASLLSACASNGALCK 332
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +HSY+ + +S +V A++++YV C D+ A ++F ++++ W+ ++
Sbjct: 333 GEQLHSYV-IKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFG 391
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ ++F M I G+ P+ T+ +++ C+ G +D G + + V + Q
Sbjct: 392 KLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGE---QIHTQVIKTGFQF 448
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
Y C ++DMY + G L+ A +R + E + W AL++ H
Sbjct: 449 NVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQH 494
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D VSW MI G+++ G+ EEA+ +F EM T P +VLS C+ I G+
Sbjct: 176 KDSVSWVAMISGFSQNGYEEEAIHLFCEMH-TAGIFPTPYVFSSVLSGCTKIKLFDVGEQ 234
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+ + +Y S+ V NA++ +Y + + A +VF+ + KD +S++++ISGLA G
Sbjct: 235 LHALV-FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQG 293
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
AL+LF+ M + + PD VT +L+SAC+ G + +G
Sbjct: 294 FSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKG 333
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 121/255 (47%), Gaps = 11/255 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP R V SW +I G+ E+ + +F M + + P E + +VL ACS +
Sbjct: 71 MPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIE-ENVSPTEISFASVLRACSGHRIGIR 129
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + +H+ I + L S ++ N +I +Y K G + A +VF+ L KD +SW +ISG
Sbjct: 130 YAEQIHARIIC-HGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGF 188
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG +A+ LF M G+FP F +++S C+ L D G L + V++
Sbjct: 189 SQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLH---ALVFKYGSS 245
Query: 180 TQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND---EMFDPI 234
+ Y C +V +Y R AE +M + E S + + +D E+F +
Sbjct: 246 LETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305
Query: 235 RQELVNKKGVSVGTF 249
+++ + V+V +
Sbjct: 306 KRDYLKPDCVTVASL 320
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 20/233 (8%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ + DVVSWT +I GYA+ EA+ F+EM + + + + +SAC+ I AL+
Sbjct: 476 LTEDDVVSWTALISGYAQHNLFAEALKHFKEM-LNRGIQSDNIGFSSAISACAGIQALNQ 534
Query: 61 GQYVH--SYIS-TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
G+ +H SY+S DLS+ GNA++++Y +CG + A F + KD ISW+ +IS
Sbjct: 535 GRQIHAQSYVSGYSEDLSI----GNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLIS 590
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMST 172
G A +G AL++F+ M + TF + +SA ++ + QG +I+ + +
Sbjct: 591 GFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDS 650
Query: 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
E+ ++ Y + G +E+A EMP + + S W A++ H
Sbjct: 651 DIEVSN------ALITFYAKCGSIEDARREFCEMPEKNDVS-WNAMITGYSQH 696
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 8/219 (3%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VV W M+ + + E+ +F++M+ K PN+ T ++L C+S+ AL G+ +
Sbjct: 379 NVVLWNVMLVAFGKLDNLSESFRIFRQMQ-IKGLIPNQFTYPSILRTCTSVGALDLGEQI 437
Query: 65 HSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H+ I T + +V V + +I+MY K G + A + L D++SW+ +ISG A +
Sbjct: 438 HTQVIKTGFQFNV--YVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHN 495
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL+ F M+ G+ D++ F + ISAC+ ++QG + A S V
Sbjct: 496 LFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQI-HAQSYVSGYSEDLSIG 554
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSV-WGALLNA 221
+V +Y R G ++ EA++ I+A+ S+ W L++
Sbjct: 555 NALVSLYARCGRIK--EAYLEFEKIDAKDSISWNGLISG 591
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+++ VSW MI GY++ G+ EAV++F++M++ E PN T V VLSACS + ++
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEM-PNHVTFVGVLSACSHVGLVTK 736
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ-VFNMLAYKDMISWSTVISGL 119
G +S + L V+++ + G + A + + M D W T++S
Sbjct: 737 GLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSAC 796
Query: 120 AMN 122
++
Sbjct: 797 TVH 799
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
N T + +L C + +L + +H I + +++ N ++++Y GD+ ++V
Sbjct: 9 NCQTYIWLLDLCLNSGSLVECKKLHGKI-LKLGFGNESVLCNKLVDVYFALGDLDGVVKV 67
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
F + + + SW +ISG + L LFS MI V P +++F +++ ACS
Sbjct: 68 FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACS 122
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 178/293 (60%), Gaps = 6/293 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+VSW+ +I GY + G EEA+ +F EM +E +V+VLSAC+ +S +
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEM-NANGMRLDEVVVVSVLSACAHLSIVKT 282
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVI----NMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
G+ +H + S NL NA+I +MY+KCG V A++VFN + K + SW+ +I
Sbjct: 283 GKMIHGLVIRMGIESYVNL-QNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALI 341
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
GLA+NG ++L +FS M NGV P+++TF+ ++ AC H GLVD+G F +M + I
Sbjct: 342 IGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGI 401
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
P +HY C+VD+ GRAGLL EAE I MP+ + + WGALL AC+ H + EM + + +
Sbjct: 402 EPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGR 461
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+L+ + G L+SN FA WED ++R +++ G+ K GCS IE N
Sbjct: 462 KLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 514
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 121/273 (44%), Gaps = 52/273 (19%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG-QYVHSY 67
W TM+ Y + E+A+ +++ M K P+ T V+ AC+ + L FG + +H +
Sbjct: 97 WNTMMRAYIQSNSAEKALLLYKLMVKNNVG-PDNYTYPLVVQACA-VRLLEFGGKEIHDH 154
Query: 68 I-STRYDLSVSNLVGNAVINMYVKCG-------------------------------DVG 95
+ +D V V N +INMY CG D+G
Sbjct: 155 VLKVGFDSDV--YVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMG 212
Query: 96 IAIQ---VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
++ +FN + KDM+SWS +ISG NG +AL +F M NG+ D+V ++++S
Sbjct: 213 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 272
Query: 153 ACSHGGLVD-----QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
AC+H +V GL++ + + + H DMY + G +E A M
Sbjct: 273 ACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS--DMYMKCGCVENALEVFNGME 330
Query: 208 IEAEWSVWGALLNACRIH----RNDEMFDPIRQ 236
E S W AL+ ++ R+ +MF ++
Sbjct: 331 -EKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 362
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS- 155
++Q+F+ + + W+T++ + +AL L+ LM+ N V PD+ T+ ++ AC+
Sbjct: 82 SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 141
Query: 156 -----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
G + ++ S VY V T +++MY G + +A E P+
Sbjct: 142 RLLEFGGKEIHDHVLKVGFDSDVY--VQNT-----LINMYAVCGNMRDARKLFDESPVLD 194
Query: 211 EWSVWGALL 219
S W ++L
Sbjct: 195 SVS-WNSIL 202
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 176/287 (61%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW +M+ + G+ E+ + +F M++ P++AT+V +L AC+
Sbjct: 225 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-INPDQATMVALLRACTDTGLGRQ 283
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+YI R + ++ A++N+Y K G + + +F + +D I+W+ +++G A
Sbjct: 284 AESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYA 342
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ CGR+A++LF LM+ GV D VTF L+SACSH GLV++G F+ MS VY + P+
Sbjct: 343 VHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRL 402
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ GR+G LE+A I+ MP+E VWGALL ACR++ N E+ + ++L++
Sbjct: 403 DHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS 462
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++SN ++ A W DA+K+R ++ L + GCS+IE
Sbjct: 463 LDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 509
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 131/253 (51%), Gaps = 18/253 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+VSW +++ G + RG+ ++ F M +PNE TL++V+SAC+ + AL
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + +S V N++INMY K G + A Q+F + + ++SW++++
Sbjct: 183 GKSLHGVV-VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 241
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIV 177
NG + + LF+LM G+ PD T +AL+ AC+ GL Q + + +I+
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 301
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDP 233
T ++++Y + G L +E E+ + + W A+L +H ++FD
Sbjct: 302 IATA----LLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVHACGREAIKLFD- 355
Query: 234 IRQELVNKKGVSV 246
L+ K+GV V
Sbjct: 356 ----LMVKEGVEV 364
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 101/182 (55%), Gaps = 17/182 (9%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+LV +S+C+S+S S +H+ + + S +G+ +++MY K G A ++F+
Sbjct: 67 SLVFAISSCTSVSYCS---AIHARVIKSLNYS-DGFIGDRLVSMYFKLGYDEDAQRLFDE 122
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQ 162
+ KD++SW++++SGL+ G L F M +G P++VT ++++SAC+ G +D+
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 182
Query: 163 -----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G+++ MS ++V +++MYG+ G L+ A EMP+ + S W +
Sbjct: 183 GKSLHGVVVKLGMSGKAKVVNS------LINMYGKLGFLDAASQLFEEMPVRSLVS-WNS 235
Query: 218 LL 219
++
Sbjct: 236 MV 237
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 172/289 (59%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RDVV++ +M+ GY + + EA+ +F +MEK P+E TLV VLSA + + LS
Sbjct: 284 MPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 343
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H YI + + +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 344 AMDMHLYIVEK-QFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLA 402
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A + + + PDD+TF+ +++ACSH GLV +GL+ F+ M ++I P+
Sbjct: 403 IHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRL 462
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ R+G +E A+ I EMP+E +W L AC H+ E + + + L+
Sbjct: 463 QHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLIL 522
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + ++ L+SN +A W+DA ++R ++ L+K GCSWIE++
Sbjct: 523 QAGYNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELD 571
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD VS+ +MI GY + G A +F M K + L++ S S + S
Sbjct: 157 MPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMK------NLISWNSMISGYAQTSD 210
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G + S + ++ +L+ N++I+ YVK G + A +F ++ +D+++W+T+I G
Sbjct: 211 GVNIASKLFA--EMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGY 268
Query: 120 AMNGCGRQALQLFSLMIINGVF--------------------------------PDDVTF 147
A G +A LF M V PD+ T
Sbjct: 269 AKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTL 328
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEA 201
+ ++SA + G L KAM IV + Q + ++DMY + G +++A
Sbjct: 329 VIVLSAIAQLGR------LSKAMDMHLYIV-EKQFFLGGKLGVALIDMYSKCGSIQQA-M 380
Query: 202 FIREMPIEAEWSVWGALLNACRIH 225
+ E W A++ IH
Sbjct: 381 LVFERIENKSIDHWNAMIGGLAIH 404
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 94/201 (46%), Gaps = 18/201 (8%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
++ +L VL ACS + + G +H ++ + + + N +I +Y+KCG +G A Q+
Sbjct: 95 DKFSLSLVLKACSRLGFVQEGMQIHGFLR-KTGIWSDLFLQNCLIGLYLKCGCLGFARQI 153
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGL 159
F+ + +D +S++++I G G A +LF LM P ++ I+ S S
Sbjct: 154 FDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLM------PKEMKNLISWNSMISGYAQ 207
Query: 160 VDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
G+ S ++ +P+ + ++D Y + G +E+A+ MP + W
Sbjct: 208 TSDGV---NIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMP-RRDVVTWAT 263
Query: 218 LLNACR----IHRNDEMFDPI 234
+++ +H+ +FD +
Sbjct: 264 MIDGYAKLGFVHKAKTLFDQM 284
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
+D W+ VI + ++AL F LM+ NGV D + ++ ACS G V +G+ +
Sbjct: 59 EDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQI 118
Query: 167 ---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ ++ Q C++ +Y + G L A MP
Sbjct: 119 HGFLRKTGIWSDLFLQN----CLIGLYLKCGCLGFARQIFDRMP 158
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 181/293 (61%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW T+I G+A +G E +S F+ M++ + TL +L C+ ++AL
Sbjct: 237 MPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGF-SWITLTTMLPVCAQVTALHS 295
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H I +R + V L N++++MY KCG++G +VF+ + KD+ SW+T+++G
Sbjct: 296 GKEIHGQILKSRKNADVPLL--NSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGF 353
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++NG +AL LF MI G+ P+ +TF+AL+S CSH GL +G LF + + + P
Sbjct: 354 SINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPS 413
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GR+G +EA + +P+ S+WG+LLN+CR++ N + + + + L
Sbjct: 414 LEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLF 473
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A WED ++R+ + G+KK GCSWI++ I
Sbjct: 474 EIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKKDAGCSWIQIKHKI 526
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 112/247 (45%), Gaps = 19/247 (7%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W M GY+ GF EA+ ++++M +P L ACS + G+ +H+ I
Sbjct: 143 WVAMAIGYSRNGFSHEALLLYRDMLSCC-VKPGNFAFSMALKACSDLDNALVGRAIHAQI 201
Query: 69 STRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++D+ ++ +V NA++ +YV+ G ++VF + ++++SW+T+I+G A G +
Sbjct: 202 -VKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFE 260
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLILFKAMSTVYEIVPQTQH 182
L F +M G+ +T ++ C+ H G G IL + ++
Sbjct: 261 TLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNS--- 317
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNAC----RIHRNDEMFDPIRQEL 238
++DMY + G + E M + + W +L +IH +FD + +
Sbjct: 318 ---LMDMYAKCGEIGYCEKVFDRMH-SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373
Query: 239 VNKKGVS 245
+ G++
Sbjct: 374 IEPNGIT 380
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V WT M+ G+ + G EEA++++ M+K + P+++T+ + L AC+ I+AL G+ +
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQL 444
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I +Y L + VG+A+ MY KCG++ + VF + +D+I+W+++ISG + NGC
Sbjct: 445 HTQI-VKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGC 503
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G AL LF M + G PD++TFI ++ ACSH GLVD+G F M+ Y + P+ HYA
Sbjct: 504 GNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYA 563
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ RAG+L+EA+ FI + I+ +W +L ACR R+ ++ + L+
Sbjct: 564 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTR 623
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN +A +W D ++R +R G+ K GCSW+E+N +
Sbjct: 624 DSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 671
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 10/281 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ SW+TM+ GYA EEA +F+ M + +E +E VLSA S L
Sbjct: 179 MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLM 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I L + V N+++ MY K G +G A VF ++ I+WS +I+G A
Sbjct: 239 GEQMHGLIVKDGLLDFVS-VENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ +FS M G P + TF+ +++A S G + G +A + ++ +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK---QAHGLMVKLGFEV 354
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q Y + +VDMY + G + +A+ ++ E + +W A+++ + +
Sbjct: 355 QIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAMVSG-HVQNGEHEEALTLYAR 412
Query: 239 VNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++K+G+ S T A AG E ++ +I + GL
Sbjct: 413 MDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGL 453
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDV SW +++ + R +A+S F+ M + P+ + +A + ++ G
Sbjct: 80 RDVASWNSLLNPLS-RHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTA 138
Query: 64 VHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H+ ++ + +VSN+ V +++NMY K G V A ++F+ + ++ SWST+++G A
Sbjct: 139 AHA-LACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAE 197
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFI--ALISACS-----------HGGLVDQGLILFKA 169
C +A LF LM + + F+ A++SA S HG +V GL+ F +
Sbjct: 198 KCSEEAFDLFRLM-LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVS 256
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+ +V MY +AG + A
Sbjct: 257 VEN------------SLVTMYAKAGCMGAA 274
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV++W ++I G+++ G A+ +F+EM K + P+ T +N+L ACS + +
Sbjct: 483 IPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITFINILCACSHMGLVDR 541
Query: 61 GQYVHSYISTRYDLS 75
G S ++ Y L+
Sbjct: 542 GWEYFSLMTKDYGLT 556
>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Brachypodium distachyon]
Length = 868
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 174/292 (59%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DV+SW++MI G+ EA+ F+ M + +PN T + L+AC++ +L
Sbjct: 458 MPDKDVISWSSMIAGFCFNHKNFEALYYFRHM--LADVKPNSVTFIAALAACAATGSLRC 515
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ R ++ V NA++++YVKCG G A F KD++SW+ +++G
Sbjct: 516 GKEIHAHV-LRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFV 574
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL F+ M+ G PD+VTF+AL+ CS G+V QG LF +M+ Y IVP
Sbjct: 575 AHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNL 634
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ R G L E FI MPI + +VWGALLN CRIHRN E+ + + ++
Sbjct: 635 KHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLE 694
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G L+S+ +A A W + +K+R +R GL+ GCSW+EV +I
Sbjct: 695 LEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAI 746
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 6/278 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M D +SW MI G+ E CE + +F M + E EPN T+ +V A +S L F
Sbjct: 256 MSLTDCISWNAMIAGHFENHECEAGLELFLHMLE-DEVEPNLMTITSVTVASGLLSDLDF 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+ ++ + + N++I MY G +G A VF+ + +D +SW+ +ISG
Sbjct: 315 AKEIHA-LAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYE 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL++++LM +N V PDDVT + ++AC+ G +D G+ L + ++T +
Sbjct: 374 KNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHE-LATSKGFIRYI 432
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELV 239
+V+MY ++ ++E+A + MP + + W +++ C H+N E R L
Sbjct: 433 VVANALVEMYAKSKIIEKAIEVFKYMP-DKDVISWSSMIAGFCFNHKNFEALYYFRHMLA 491
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
+ K SV TF A +I + R G+
Sbjct: 492 DVKPNSV-TFIAALAACAATGSLRCGKEIHAHVLRQGI 528
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW M+GGY + GF EEA+ ++ M A P+ T VL +C + L+
Sbjct: 155 MPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAG-ARPDVYTFPCVLRSCGGVPDLTM 213
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+++ R+ L V V NA++ MY KCGDV A +VF+ ++ D ISW+ +I+G
Sbjct: 214 GREVHAHV-LRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHF 272
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
N L+LF M+ + V P+ +T ++ A
Sbjct: 273 ENHECEAGLELFLHMLEDEVEPNLMTITSVTVA 305
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 32 MEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91
+E + E P+E V + C A G + + + +GNA+++M V+
Sbjct: 85 LESSPEP-PDEDAYVALFHLCEWRRAAEHGLRACGHADAAHG-TFGLRLGNAMLSMLVRF 142
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G+ A +VF + +D+ SW+ ++ G G +AL L+ M+ G PD TF ++
Sbjct: 143 GETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVL 202
Query: 152 SACSHGGLVD 161
+C GG+ D
Sbjct: 203 RSC--GGVPD 210
>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Glycine max]
Length = 723
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 172/286 (60%), Gaps = 1/286 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++ +++W M+ GYA EE +F+EM + + EPN T+ +VL C+ I+ L G+
Sbjct: 380 EKGLITWNAMLSGYAHMDRYEEVTFLFREMLQ-EGMEPNYVTIASVLPLCARIANLQHGK 438
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
H YI L+ NA+++MY + G V A +VF+ L +D ++++++I G M
Sbjct: 439 EFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMK 498
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G L+LF M + PD VT +A+++ACSH GLV QG +LFK M V+ IVP+ +H
Sbjct: 499 GEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEH 558
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+ D++GRAGLL +A+ FI MP + ++W LL ACRIH N EM + +L+ K
Sbjct: 559 YACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMK 618
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + L++N +A A W ++R +R +G++K GC+W++V
Sbjct: 619 PDHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDV 664
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + W +I Y GF EA+ V++ M K+ EP+E T +VL AC + G V
Sbjct: 146 DPLHWNLLISAYVRNGFFVEALCVYKNM-LNKKIEPDEYTYPSVLKACGESLDFNSGLEV 204
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H I + S V NA+++MY + G + IA +F+ + +D +SW+T+IS A G
Sbjct: 205 HRSIEAS-SMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGI 263
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
++A QLF M GV + + + + C H G L L M T
Sbjct: 264 WKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRT 311
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEK-------------------------- 34
MP+RD VSW T+I YA RG +EA +F M++
Sbjct: 243 MPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGA 302
Query: 35 -------TKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87
+ +V L+ACS I A+ G+ +H + + R V + V NA+I M
Sbjct: 303 LQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGH-AVRTCFDVFDNVKNALITM 361
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y +C D+G A +F+ K +I+W+ ++SG A + LF M+ G+ P+ VT
Sbjct: 362 YSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTI 421
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
+++ C+ + G + + + +VDMY R+G + EA
Sbjct: 422 ASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEAR 474
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG---DVGIAIQVFNM 103
++L AC+ +LS G+ +H+ + + L + ++ + ++N Y D + N
Sbjct: 86 SLLLACTHFKSLSQGKQLHAQVIS-LGLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNT 144
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
L D + W+ +IS NG +AL ++ M+ + PD+ T+ +++ AC + G
Sbjct: 145 L---DPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSG 201
Query: 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 223
L + +++ H A +V MYGR G LE A MP S W ++ +C
Sbjct: 202 LEVHRSIEASSMEWSLFVHNA-LVSMYGRFGKLEIARHLFDNMPRRDSVS-WNTII-SCY 258
Query: 224 IHRND-----EMFDPIRQELVNKKGVSVGTFA---LMSNTFAGA 259
R ++F +++E V + T A L S F GA
Sbjct: 259 ASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGA 302
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 68/125 (54%), Gaps = 4/125 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ KRD V++T+MI GY +G E + +F+EM K E +P+ T+V VL+ACS ++
Sbjct: 480 LTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKL-EIKPDHVTMVAVLTACSHSGLVAQ 538
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVI-NMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISG 118
GQ + + + + V L A + +++ + G + A + + YK + W+T++
Sbjct: 539 GQVLFKRMIDVHGI-VPRLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGA 597
Query: 119 LAMNG 123
++G
Sbjct: 598 CRIHG 602
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW MIGGY++ G EEAV++F EM + PNE+T VL++ +S L
Sbjct: 135 MPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGG-VSPNESTFPCVLTSVASAGTLGV 193
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + ++ + +GN++++ Y +CG + ++ F + K+++SW+ +I G A
Sbjct: 194 GRSIHAS-AIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYA 252
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G +AL + +M G+ PD++T + L+ C+H GLVD+G LFK + +
Sbjct: 253 QNGKGEEALDAYRMMRATGLKPDNLTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKP 312
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ RA +EA F+ E+P E W ALL C+IH N ++ + + + +
Sbjct: 313 EHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVAKRIRA 372
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ L+SN ++ + W+ + +R EI+ GLK+ TGCSWIEV +
Sbjct: 373 LDPKDTSSYILLSNVYSASGSWQSVSMVRREIKEKGLKRITGCSWIEVQEKV 424
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISAL 58
MP RDV+S T IG G +A+++F + A PNE T VL + ++ + A
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLAGGVA-PNEFTFGTVLRSATALRVRAP 59
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------G 95
G +H+ + + L + VG+A+++ Y K G + G
Sbjct: 60 RVGVQLHA-CAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAG 118
Query: 96 I--------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ A ++F + ++++SW+ +I G + G G +A+ LF M GV P++ TF
Sbjct: 119 LLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTF 178
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEA 199
++++ + G + G + ++ + + + Y +V Y R G LE++
Sbjct: 179 PCVLTSVASAGTLGVGRSIH---ASAIKFLGKLDVYIGNSLVSFYARCGSLEDS 229
>gi|359475492|ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 532
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 109/290 (37%), Positives = 169/290 (58%), Gaps = 3/290 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
KR V+ W +I Y + G EA+S+F+ M + PN T+V+VLSAC+ + L G+
Sbjct: 113 KRSVLPWNVIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGK 172
Query: 63 YVHSYIST---RYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
++H Y+ + + + + + A+I+MY KCG++G A VF + KD++S++ +I GL
Sbjct: 173 WIHGYVKSEGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQMVSKDVVSFNAMIMGL 232
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A+NG G +AL+LFS M + P+ TF+ ++ ACSH GL+D G +F M + + P+
Sbjct: 233 AINGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFSVPPE 292
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC VD+ R GLLEEA + MP VWGALL CR+H E+ + Q+LV
Sbjct: 293 LEHYACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVSQKLV 352
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + SN A +W + + +R +R G++K GCSWI VN
Sbjct: 353 KVDPENSAGYVMFSNALASDQQWGEVSGLRWLMREKGVRKHPGCSWISVN 402
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 13/218 (5%)
Query: 1 MPKRDVVS-WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP R +V WT++I G A+ G EE + +F M K + P T+V+VLSACS + A+
Sbjct: 1 MPDRAMVRCWTSLIAGSAQSGQTEEVLRLFFMMVK-ENLRPENDTIVSVLSACSKLEAVE 59
Query: 60 FGQYV---HSYISTRYDLSVSNLVGNAVIN-MYVKCGDVGIAIQVFNM---LAYKDMISW 112
++V +I+ S N V+ +Y K G V + F+ + + ++ W
Sbjct: 60 IEKWVMILSEFINDDDTGSFGRDSVNTVLAYLYGKWGKVEKCKERFDEIVGIGKRSVLPW 119
Query: 113 STVISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
+ +IS NGC +AL LF +MI + + P+ VT ++++SAC+ G +D G + +
Sbjct: 120 NVIISAYVQNGCSFEALSLFRVMIEDLNLRPNHVTMVSVLSACAQVGDLDLGKWIHGYVK 179
Query: 172 T--VYEIVPQTQHYA-CVVDMYGRAGLLEEAEAFIREM 206
+ IV A ++DMY + G L +A+ +M
Sbjct: 180 SEGCKAIVESNTFLATALIDMYSKCGNLGKAKDVFEQM 217
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +DVVS+ MI G A G EEA+ +F +M++ PN T + VL ACS L
Sbjct: 217 MVSKDVVSFNAMIMGLAINGEGEEALRLFSKMQELS-LRPNSGTFLGVLCACSHSGLLDT 275
Query: 61 GQ 62
G+
Sbjct: 276 GR 277
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 186/295 (63%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ +SW+ ++ Y+ G +E + +F+ M++ PNE+ LV+VL+AC+ + AL+
Sbjct: 206 MPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTM-PNESVLVSVLTACAHLGALAQ 264
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VHSY + + + + ++ A+++MY KCG V A+ F + KD +W+ +ISG+A
Sbjct: 265 GLWVHSY-AKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVA 323
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG ++L+LF+ MI NG P + TF+A+++AC+H LV +GL LF+ MS+ Y + PQ
Sbjct: 324 MNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQL 383
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
+HYAC+VD+ RAG+L EAE FI E + +VWGA+L ACR + N E+ + + ++
Sbjct: 384 EHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKK 443
Query: 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L + GT L N + A +A ++R I G+KKK GCS IEV+ ++
Sbjct: 444 LADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSIIEVDGTV 498
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 124/278 (44%), Gaps = 42/278 (15%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FG 61
R++ + +MI GY A+ + +M N T ++ AC+++ + S G
Sbjct: 75 RNIFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLL-ANNYTFPPLIKACTTLGSSSKLIG 133
Query: 62 QYVHSYIST-------------------RYDLSVSN-----------LVGNAVINMYVKC 91
VH+++ T +D+ + ++ A+I+ Y K
Sbjct: 134 CLVHAHVVTFGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKM 193
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
GDV A +F + ++ ISWS V++ + G ++ L LF M G P++ ++++
Sbjct: 194 GDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVL 253
Query: 152 SACSHGGLVDQGLILFK-AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
+AC+H G + QGL + A ++ P +VDMY + G +E A + + +P
Sbjct: 254 TACAHLGALAQGLWVHSYAKQCNFDSNPILA--TALVDMYSKCGCVESALSTFQGIP-NK 310
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT 248
+ W A+++ + N + + + EL NK +S GT
Sbjct: 311 DAGAWNAMISG--VAMNGDAWKSL--ELFNKM-ISNGT 343
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 5/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV+SW ++I GYA+ G A+ VF++M K + EP E T+V+ L AC+ + L
Sbjct: 277 MPERDVISWNSLISGYAKLGMYSRALDVFRDMWKN-DIEPTELTVVSALGACAEVGELEL 335
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ ++ + VGNA+++MY KCG++ +A QVF+ ++ KD+ W+T+I GL+
Sbjct: 336 GRGIHDYLKSK-GIEADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTCWNTMIVGLS 394
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G AL+LF LM I PD VTF+ +++ACSH GL+++G + FK+M Y+IVP
Sbjct: 395 VHGHSHDALKLFDLMNIE---PDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSM 451
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+++M R G + EA I +MP++A +W ++ ACR+H + ++ D +
Sbjct: 452 KHYGCIINMLCRYGKVHEAYQMINDMPVKANSVLWKMVMAACRVHGHFDIADRAVHRMHE 511
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G +SN +A A+RW+D +R ++ K S + V
Sbjct: 512 LMPMDDGDVITVSNAYAEAERWDDVEHLRTKVIGCSGSKHAAHSQVHVK 560
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+ I V+ GD+ A ++F + +D+ISW+++ISG A G +AL +F M N +
Sbjct: 255 NSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDMWKNDIE 314
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
P ++T ++ + AC+ G ++ G + + + I +VDMY + G L+ A
Sbjct: 315 PTELTVVSALGACAEVGELELGRGIHDYLKS-KGIEADGYVGNALVDMYAKCGNLKLARQ 373
Query: 202 FIREMPIEAEWSVWGALLNACRIH 225
M I+ + + W ++ +H
Sbjct: 374 VFDSMSIK-DVTCWNTMIVGLSVH 396
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 183/313 (58%), Gaps = 22/313 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA---------------EPNEATL 45
M RD+VSW T+I Y G +A+ + EM++ +E +PN TL
Sbjct: 380 MEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITL 439
Query: 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105
+ VL C+S+SAL+ G+ +H+Y + R L+ VG+A+++MY KCG + +A +VF+ +
Sbjct: 440 MTVLPGCASLSALAKGKEIHAY-AIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMP 498
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIING-----VFPDDVTFIALISACSHGGLV 160
+++I+W+ +I M+G G+++L+LF M+ G V P +VTFIAL ++CSH G+V
Sbjct: 499 IRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMV 558
Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGALL 219
D+GL LF M + I P HYAC+VD+ GRAG +EEA + MP + W +LL
Sbjct: 559 DEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLL 618
Query: 220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279
ACRI+ N E+ + + L+ + + L+SN ++ A W+ A +R ++ MG+KK
Sbjct: 619 GACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKK 678
Query: 280 KTGCSWIEVNPSI 292
+ GCSWIE +
Sbjct: 679 EPGCSWIEYGDEV 691
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 116/233 (49%), Gaps = 9/233 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI---SA 57
+ +RD VSW ++I E A+ F+ M + EP+ TLV++ ACS++
Sbjct: 73 ITERDQVSWNSIISALCRFEEWEVAIKAFRLM-LMEGFEPSSFTLVSMALACSNLRKRDG 131
Query: 58 LSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
L G+ +H + + + SN NA++ MY K G + A + + +D+++W+++I
Sbjct: 132 LWLGKQIHGCCFRKGHWRTFSN---NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMI 188
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
S + N +AL LM++ GV PD VTF +++ ACSH L+ G + ++
Sbjct: 189 SSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDV 248
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ + + +VDMY G +E + + ++ + +W A++ +DE
Sbjct: 249 IENSFVGSALVDMYCNCGQVESGR-LVFDSVLDRKIGLWNAMIAGYAQSEHDE 300
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 19/238 (7%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R + W MI GYA+ E+A+ +F EME N T+ +++ A +S +
Sbjct: 281 RKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEG 340
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H Y+ R L + + NA+I+MY + GD+ + ++F+ + +D++SW+T+I+ + G
Sbjct: 341 IHGYVIKR-GLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICG 399
Query: 124 CGRQALQLFSLM-------IINGVF---------PDDVTFIALISACSHGGLVDQGLILF 167
AL L M +G + P+ +T + ++ C+ + +G +
Sbjct: 400 RSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEI- 458
Query: 168 KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A + + Q + +VDMY + G L A +MPI + W ++ A +H
Sbjct: 459 HAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVIT-WNVIIMAYGMH 515
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 105/217 (48%), Gaps = 29/217 (13%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W +MI +++ EA+ +F + + +P+ T +VL ACS + L G+
Sbjct: 179 RDLVTWNSMISSFSQNERFMEAL-MFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKE 237
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y D+ ++ VG+A+++MY CG V VF+ + + + W+ +I+G A +
Sbjct: 238 IHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSE 297
Query: 124 CGRQALQLFSLM-IINGVFPDDVTFIALISA---CS--------HGGLVDQGLILFKAMS 171
+AL LF M G++ + T +++ A C HG ++ +GL
Sbjct: 298 HDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGL------- 350
Query: 172 TVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREM 206
+T Y ++DMY R G ++ ++ M
Sbjct: 351 -------ETNRYLQNALIDMYSRMGDIKTSKRIFDSM 380
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 10/170 (5%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAI 98
P+ VL A + I L G+ +H+++ Y S + N ++NMY KCG +G A
Sbjct: 8 PDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAY 67
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158
+VF+ + +D +SW+++IS L A++ F LM++ G P T +++ ACS+
Sbjct: 68 KVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLR 127
Query: 159 LVDQGLILFKAMSTVYEIVPQTQHYA-----CVVDMYGRAGLLEEAEAFI 203
D GL L K ++ + H+ ++ MY + G L++A++ +
Sbjct: 128 KRD-GLWLGK---QIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLL 173
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 175/287 (60%), Gaps = 4/287 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVVSWT M+ GYA+ EA+ +F+EM P+E +V V+SAC+S+ L
Sbjct: 437 MPERDVVSWTVMVSGYAQAKRSREALELFREMRDVG-VRPDEVAMVIVISACTSLGDLET 495
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G VH YI + VS + NA+I+MY KCG + +A QVFN + K +I+W+++IS
Sbjct: 496 GFEVHRYIDENGFGWMVS--LCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISAC 553
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G A ++F+LM+ +G+ PD VTF+AL++A +H G VD G LF++M Y +
Sbjct: 554 ANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAG 613
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VDM GRAG LEEA I M + VWGALL ACRI+ + EM + + ++L+
Sbjct: 614 VEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERVLKKLI 673
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
K G + L+ + + A R +A ++R + G KK GCSW+
Sbjct: 674 ELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCSWV 720
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 6/144 (4%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+V+ G++ +A QVF+ + +D++SW+ ++SG A R+AL+LF M GV PD+V
Sbjct: 421 HVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAM 480
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIRE 205
+ +ISAC+ G ++ G F+ + E C ++DMY + G ++ A
Sbjct: 481 VIVISACTSLGDLETG---FEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNN 537
Query: 206 MPIEAEWSVWGALLNACRIHRNDE 229
M W ++++AC H N E
Sbjct: 538 ME-RKSLITWNSMISACANHGNAE 560
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V WT M+ G+ + G EEA++++ M+K + P+++T+ + L AC+ I+AL G+ +
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQL 444
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I +Y L + VG+A+ MY KCG++ + VF + +D+I+W+++ISG + NGC
Sbjct: 445 HTQI-VKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGC 503
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G AL LF M + G PD++TFI ++ ACSH GLVD+G F M+ Y + P+ HYA
Sbjct: 504 GNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYA 563
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ RAG+L+EA+ FI + I+ +W +L ACR R+ ++ + L+
Sbjct: 564 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTG 623
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN +A +W D ++R +R G+ K GCSW+E+N +
Sbjct: 624 DSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 671
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 10/281 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ SW+TM+ GYA EEA +F+ M + +E +E VLSA S L
Sbjct: 179 MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLM 238
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I L + V N+++ MY K G +G A VF ++ I+WS +I+G A
Sbjct: 239 GEQMHGLIVKDGLLDFVS-VENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 297
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ +FS M G P + TF+ +++A S G + G +A + ++ +
Sbjct: 298 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK---QAHGLMVKLGFEV 354
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q Y + +VDMY + G + +A+ ++ E + +W A+++ + +
Sbjct: 355 QIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAMVSG-HVQNGEHEEALTLYAR 412
Query: 239 VNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++K+G+ S T A AG E ++ +I + GL
Sbjct: 413 MDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGL 453
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 100/211 (47%), Gaps = 31/211 (14%)
Query: 4 RDVVSWTTMIGGYA-ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
RDV SW +++ + R +A+S F+ M + P+ + +A + ++ G
Sbjct: 80 RDVTSWNSLLNPLSGHRPL--DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGT 137
Query: 63 YVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
H+ ++ + +VSN+ V +++NMY K G V A +VF+ + ++ SWST+++G A
Sbjct: 138 AAHA-LACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAA 196
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFI--ALISACS-----------HGGLVDQGLILFK 168
C +A LF LM + + F+ A++SA S HG +V GL+ F
Sbjct: 197 EKCSEEAFDLFRLM-LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFV 255
Query: 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
++ +V MY +AG + A
Sbjct: 256 SVEN------------SLVTMYAKAGCMGAA 274
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV++W ++I G+++ G A+ +F+EM K + P+ T +N+L ACS + +
Sbjct: 483 IPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITFINILCACSHMGLVDR 541
Query: 61 GQYVHSYISTRYDLS 75
G S ++ Y L+
Sbjct: 542 GWEYFSLMTKDYGLT 556
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 177/289 (61%), Gaps = 3/289 (1%)
Query: 1 MP-KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
MP K + +SWTTMI GY + G +EA+ +F EM+ + P+ +L + LSACS + AL
Sbjct: 202 MPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNS-NVPPDNVSLASALSACSQLGALE 260
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++HSY + + + +++ +I+MY KCG++ A+ VF + K + W+ +ISG
Sbjct: 261 QGKWIHSY-ANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGY 319
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G GR+A+ F M GV P+ +TF A+++ACS+ GLV++G +F + Y + P
Sbjct: 320 AYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPT 379
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C+VD+ GRAGLL EA FI++MP++ +WG+LL AC+IH+N E+ + I + L+
Sbjct: 380 IEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILI 439
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + M+N A +W+ A + R +R G+ K GCS I +
Sbjct: 440 EMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISL 488
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 109/256 (42%), Gaps = 38/256 (14%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D W MI G + + ++ ++ M A N T +L ACS++SA
Sbjct: 72 RPDTFLWNLMIRGLSCSDQPDRSLLLYHRM-LCCSAPHNAYTFPFLLKACSNLSAFQETT 130
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWS--------- 113
+H++I T++ N++IN Y G+ A +F+ + D +SW+
Sbjct: 131 QIHAHI-TKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKA 189
Query: 114 -----------------------TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
T+ISG G ++ALQLF M + V PD+V+ +
Sbjct: 190 GEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASA 249
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-VDMYGRAGLLEEAEAFIREMPIE 209
+SACS G ++QG + + + CV +DMY + G +EEA + M +
Sbjct: 250 LSACSQLGALEQGKWIHSYANKTRTRIDSV--LCCVLIDMYAKCGEMEEALGVFKNMKTK 307
Query: 210 AEWSVWGALLNACRIH 225
+ VW AL++ H
Sbjct: 308 S-VQVWTALISGYAYH 322
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 116/290 (40%), Positives = 182/290 (62%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V SWT MI GY E G +EA+S+F++M+ EPN +LV+VL ACSS S L
Sbjct: 216 MKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLS 275
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-KDMISWSTVISGL 119
G+ +H + + R +L+ + NA+I+MY KCG + A +VF + KD ISWS++ISG
Sbjct: 276 GRQIHGF-AVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGY 334
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G G++A+ L+ M+ G+ PD +T + ++SACS GLV++GL ++ ++ Y I P
Sbjct: 335 GLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPT 394
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+ +AC+VDM GRAG L+ A FI+ MP+E SVWGAL++ IH + EM + + L+
Sbjct: 395 LEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLI 454
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + + +SN +A + RW+ ++R ++ L+K GCSWI +N
Sbjct: 455 QLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCSWISIN 504
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 129/286 (45%), Gaps = 46/286 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++V W ++I GYA+ EA +F +M + + P++ TL + S + AL
Sbjct: 84 LQHKNVFLWNSLINGYAKNRLYNEAFQLFNQM-CSSDVLPDDFTLSTLSKVSSELGALFS 142
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD-----------------------VGIA 97
G+ +H S R +V N++++MY KCG+ G A
Sbjct: 143 GKSIHGK-SIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYA 201
Query: 98 I--------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFI 148
+ +VF+ + +++ SW+ +I+G NG +AL LF + +I+G+ P+ V+ +
Sbjct: 202 VSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLV 261
Query: 149 ALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+++ ACS GL+ I + E+ + ++DMY + G L+ A +
Sbjct: 262 SVLPACSSFSGLLSGRQI--HGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDS 319
Query: 208 IEAEWSVWGALLNACRIHRN--------DEMFDP-IRQELVNKKGV 244
+ + W ++++ +H D+M IR +++ G+
Sbjct: 320 LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGI 365
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Query: 37 EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96
E +P+ A L+ L + +L + HS I + LS ++L+ +I Y C
Sbjct: 19 EFDPSLA-LLQSLHFSVTHKSLKLTRQSHSRILS-LGLSQNSLLATKLIFAYAICQHPYH 76
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
+ VF+ L +K++ W+++I+G A N +A QLF+ M + V PDD T L S
Sbjct: 77 SRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSE 136
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G + G + S V T ++ MY + G EE+ EM I S W
Sbjct: 137 LGALFSGKSI-HGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGS-WN 194
Query: 217 ALL 219
L+
Sbjct: 195 VLI 197
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/287 (39%), Positives = 182/287 (63%), Gaps = 5/287 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R VV+W MI GY + G E A+ V++EM+ + P+ AT V LSAC+ AL G+
Sbjct: 173 RSVVAWNAMISGYEQNGLAERAIEVYREMQ-VAQVVPDSATFVTTLSACAQAGALDLGRE 231
Query: 64 VHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V I S + D+SV +G+A++NMY +CG V A F+ L +++++W+++I+G M+
Sbjct: 232 VERRIVSDQMDVSV--FLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMH 289
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +A++LF LM + G P+DVTF+A+++AC+H GLV++G F +M VY +VP+ +H
Sbjct: 290 GHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEH 349
Query: 183 YACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
Y +VDMYGRAGLL++A FIR+ +P E VW A+L AC++H+N + + + L+
Sbjct: 350 YCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIAL 409
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + L+SN +A + + K+R+ + + LKK+ G S IE+
Sbjct: 410 EPENPSHRVLLSNIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIEL 456
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 5/200 (2%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSF 60
P D +++ A RG EA++ + + A P + AC+ +SAL
Sbjct: 70 PACDSFLLSSLARAAAHRGLPGEAIAFYGRL--LAAALPFSSFAFTAAAKACADLSALRT 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH++ S V A++ +Y KCG + +A ++F+ + + +++W+ +ISG
Sbjct: 128 GMAVHAH-SVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYE 186
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A++++ M + V PD TF+ +SAC+ G +D G + + + + V
Sbjct: 187 QNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVF 246
Query: 181 QHYACVVDMYGRAGLLEEAE 200
A +V+MY R GL+ +A
Sbjct: 247 LGSA-LVNMYARCGLVSKAR 265
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +R+VV+WT+MI GY G EA+ +F M + + PN+ T V VL+AC+ ++
Sbjct: 271 LQERNVVTWTSMIAGYGMHGHGCEAIKLFHLM-RLEGPTPNDVTFVAVLAACAHAGLVNE 329
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
G+ + Y L ++++MY + G + A+Q
Sbjct: 330 GRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQ 368
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 176/287 (61%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R +VSW +M+ + G+ E+ + +F M++ P++AT+V +L AC+
Sbjct: 282 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG-INPDQATMVALLRACTDTGLGRQ 340
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H+YI R + ++ A++N+Y K G + + +F + +D I+W+ +++G A
Sbjct: 341 AESIHAYIH-RCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYA 399
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++ CGR+A++LF LM+ GV D VTF L+SACSH GLV++G F+ MS VY + P+
Sbjct: 400 VHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRL 459
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ GR+G LE+A I+ MP+E VWGALL ACR++ N E+ + ++L++
Sbjct: 460 DHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLS 519
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++SN ++ A W DA+K+R ++ L + GCS+IE
Sbjct: 520 LDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIE 566
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 9/228 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D+VSW +++ G + RG+ ++ F M +PNE TL++V+SAC+ + AL
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + +S V N++INMY K G + A Q+F + + ++SW++++
Sbjct: 240 GKSLHGVV-VKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIV 177
NG + + LF+LM G+ PD T +AL+ AC+ GL Q + + +I+
Sbjct: 299 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 358
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++++Y + G L +E E+ + + W A+L +H
Sbjct: 359 IAT----ALLNLYAKLGRLNASEDIFEEIK-DRDRIAWTAMLAGYAVH 401
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 96/173 (55%), Gaps = 16/173 (9%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+LV +S+C+S+S S +H+ + + S +G+ +++MY K G A ++F+
Sbjct: 124 SLVFAISSCTSVSYCS---AIHARVIKSLNYS-DGFIGDRLVSMYFKLGYDEDAQRLFDE 179
Query: 104 LAYKDMISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQ 162
+ KD++SW++++SGL+ G L F M +G P++VT ++++SAC+ G +D+
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239
Query: 163 -----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
G+++ MS ++V +++MYG+ G L+ A EMP+ +
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNS------LINMYGKLGFLDAASQLFEEMPVRS 286
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVSW+ MI GYA+ EA+S+F +M++ P+E T+++V+SAC+++ +L
Sbjct: 263 MPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECG-IRPDEVTMLSVISACANLGSLDK 321
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+++H++I L+ + NA+I+M+ KCG + +A+ +FN + K++I+W+++I+ A
Sbjct: 322 AKWIHAFIKNN-GLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFA 380
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G+ AL LF M GV P++VTF+ L+ AC H GLV +G LF +M Y I P+
Sbjct: 381 MHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKH 440
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRA L++EA I M + VWG+LL AC +H + ++ ++++
Sbjct: 441 EHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDLKLGAFAAKKILQ 500
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G L+S + +D DA ++RD ++ G+ K+TG SW+++N
Sbjct: 501 LDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLN 549
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 133/285 (46%), Gaps = 49/285 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RDVVSW M+ Y + +EA+ F +M K ++ L VLSAC I L
Sbjct: 131 MAVRDVVSWGVMLDSYCQTRNYKEALLQFAKM-KNSGVLSDQLILATVLSACGHIRHLRT 189
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM----------- 109
G+ +HSY+ D+ ++ + +A+IN+Y C + +A +++N + KD+
Sbjct: 190 GKSIHSYMLVS-DILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYA 248
Query: 110 --------------------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+SWS +ISG A + +AL LF+ M G+ PD+VT ++
Sbjct: 249 RNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLS 308
Query: 150 LISACSHGGLVDQ-----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204
+ISAC++ G +D+ I ++ + I ++DM+ + G + A
Sbjct: 309 VISACANLGSLDKAKWIHAFIKNNGLNKILHIC------NALIDMFAKCGGINLALNIFN 362
Query: 205 EMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGVS 245
EMP + W +++ A +H + + +F+ +R E V V+
Sbjct: 363 EMP-QKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVT 406
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 3/177 (1%)
Query: 32 MEKTKEAEPNEATLVNVL-SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
+ +T P L +L SA + A ++ + H+ ++ R V A++ Y
Sbjct: 59 LRRTGLPPPGPRALPALLRSAARCVGAGAYVRGAHA-LAFRVGSLDDGFVRTALVGAYAA 117
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CG VG A +VF+ +A +D++SW ++ ++AL F+ M +GV D + +
Sbjct: 118 CGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATV 177
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+SAC H + G + M V +I+ + ++++Y +E AE MP
Sbjct: 178 LSACGHIRHLRTGKSIHSYM-LVSDILINAHLSSALINLYASCASMEMAEKLYNGMP 233
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 181/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DV+SW T+I + + + VF+ M + P++ T + L+AC+ ++++S
Sbjct: 263 IEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSH 322
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ R L VGNA++NMY KCG +G A +F+ + + +++SW+T+I+G
Sbjct: 323 GKQIHAHL-MRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFG 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A++LF M +G+ PD VTFI L++AC+H GLVD+G + F +M Y I P
Sbjct: 382 NHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H++C++DM GRAG L EAE ++R+ P + V +LL+A R+H + + + + + L+
Sbjct: 442 EHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLK 501
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ V+ + L+SN +A W+ + R ++ GLKK+ G S IEVN S+
Sbjct: 502 LQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSV 553
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++VSW+ MI GY + G + A+ ++ +M PNE +V+SAC+S+SA++
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLV----PNEYVFASVISACASLSAVTL 119
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +HS S ++ + V N++I+MY+KC A+ VF + +S++ +I+G
Sbjct: 120 GQKIHSR-SLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFV 178
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N + L+ F LM G+ PD F+ ++ C+ + +G L TV + T
Sbjct: 179 ENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELH--CQTVKLNLDST 236
Query: 181 QHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
++ MY L++EAE R + E + W L+ AC H +D
Sbjct: 237 PFIGNVIITMYSELNLIQEAEKAFRLIE-EKDVISWNTLIAACS-HCDDH 284
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
TL ++L CS AL G +H+ + T+ D+ +SN V+NMY KCG A QV
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSN----HVLNMYAKCGHTTFARQV 60
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + K+++SWS +ISG G + A+ L+S M + P++ F ++ISAC+ V
Sbjct: 61 FDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAV 117
Query: 161 DQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G I +++ YE + + ++ MY + +A + P E + AL+
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSN--SLISMYMKCNQCSDALSVFTNTP-EPNCVSYNALI 174
Query: 220 NAC----RIHRNDEMFDPIRQE-LVNKKGVSVGTFALMSNT 255
++ R E F +RQ+ L+ + +G + + T
Sbjct: 175 TGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTT 215
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ + VS+ +I G+ E E + F+ M + + P+ + VL C++ L G
Sbjct: 163 PEPNCVSYNALITGFVENQQLERGLEFFKLM-RQQGLIPDRFAFMGVLGICTTTENLKRG 221
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + + +L + +GN +I MY + + A + F ++ KD+ISW+T+I+ +
Sbjct: 222 AELHCQ-TVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSH 280
Query: 122 NGCGRQALQLFSLMI-INGVFPDDVTFIALISAC------SHGGLVDQGLI---LFKAMS 171
+ L++F M V PDD TF + ++AC SHG + L+ L++ +
Sbjct: 281 CDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG 340
Query: 172 T----------------VYEIVPQTQHYACV-----VDMYGRAGLLEEAEAFIREMP--- 207
Y+I + H+ V + +G GL E A +M
Sbjct: 341 VGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASG 400
Query: 208 IEAEWSVWGALLNAC 222
I + + LL AC
Sbjct: 401 IRPDSVTFIGLLTAC 415
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 182/288 (63%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++V W TMI G+++ F +A+ +F +M +K P+E +++ L ACS +SAL
Sbjct: 563 MEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSK-IWPDEISIIGALGACSQVSALRL 621
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + + L+ + V ++I+MY KCG + + +F+ + K ++W+ +I+G
Sbjct: 622 GKELHCF-AVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG 680
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G GR+A++LF M G PD VTFIAL++AC+H GLV +GL M +++ I P+
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVDM GRAG L EA + E+P + + +W +LL++CR +R+ ++ + + +L+
Sbjct: 741 EHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLE 800
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+SN +A +W++ K+R ++ +GL+K GCSWIE+
Sbjct: 801 LGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEI 848
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 122/227 (53%), Gaps = 8/227 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + V SW +IGG+ + GF +A+ ++ M + EP+ T+ ++LSAC+ + +LS
Sbjct: 462 MESKMVSSWNALIGGHVQNGFPRKALDLYLLM-RGSGLEPDLFTIASLLSACARLKSLSC 520
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + R + + +++++YV+CG + +A F+ + K+++ W+T+I+G +
Sbjct: 521 GKEIHGSM-LRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFS 579
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVP 178
N AL +F M+ + ++PD+++ I + ACS + G L F S + E
Sbjct: 580 QNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSF 639
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
T ++DMY + G +E+++ + ++ E + W L+ IH
Sbjct: 640 VT---CSLIDMYAKCGCMEQSQNIFDRVHLKGEVT-WNVLITGYGIH 682
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 30/245 (12%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+++V+SW +MIGGY++ A + ++M+ + + NE TL+NVL C +
Sbjct: 361 EKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLK 420
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y + LV NA + Y KCG + A VF + K + SW+ +I G N
Sbjct: 421 EIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQN 480
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMS 171
G R+AL L+ LM +G+ PD T +L+SAC+ HG ++ G
Sbjct: 481 GFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGF------- 533
Query: 172 TVYEIVPQTQHYACV--VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
+ + C+ V +Y + G + A+ F M E W ++N +N+
Sbjct: 534 -------ELDEFICISLVSLYVQCGKILLAKLFFDNME-EKNLVCWNTMING--FSQNEF 583
Query: 230 MFDPI 234
FD +
Sbjct: 584 PFDAL 588
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 4/203 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++++ W ++ GY +AV VF EM E P+ TL V+ AC + + G+
Sbjct: 157 RKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGE 216
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
VH + LS VGNA+I MY K G V A++VF+ + ++++SW++V+ N
Sbjct: 217 AVHGFALKTKVLS-DVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLEN 275
Query: 123 GCGRQALQLFSLMI--INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G ++ LF ++ G+ PD T + +I C+ G V G++ F ++ + +
Sbjct: 276 GVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMV-FHGLALKLGLCGEL 334
Query: 181 QHYACVVDMYGRAGLLEEAEAFI 203
+ + ++DMY + G L EA
Sbjct: 335 KVNSSLLDMYSKCGYLCEARVLF 357
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALS 59
MP+R++VSW +++ E G EE+ +F+ + E P+ AT+V V+ C+ +
Sbjct: 257 MPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVR 316
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G H ++ + L V +++++MY KCG + A +F+ K++ISW+++I G
Sbjct: 317 LGMVFHG-LALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGY 374
Query: 120 AMNGCGRQALQLFSLMII-NGVFPDDVTFIALISAC 154
+ + R A +L M + + V ++VT + ++ C
Sbjct: 375 SKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+L C + G+ +H++IST ++ ++ MY C + VFN K
Sbjct: 99 LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158
Query: 108 DMISWSTVISGLAMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLIL 166
++ W+ ++SG N R A+ +F MI + PD+ T +I AC G+
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACV-------GVYD 211
Query: 167 FKAMSTVYEIVPQTQHYA------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ V+ +T+ + ++ MYG+ G +E A +MP + W +++
Sbjct: 212 VRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMP-QRNLVSWNSVMY 270
Query: 221 AC 222
AC
Sbjct: 271 AC 272
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 177/287 (61%), Gaps = 4/287 (1%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D +W +IGG E G EEAV +F++M+K +PNE T+ ++L ACS L G+
Sbjct: 277 RADEATWNAVIGGCMENGRSEEAVEMFRKMQKMG-FKPNEITISSILPACSFSENLRMGK 335
Query: 63 YVHSYISTRYDLSVSNLVGN-AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H Y+ + V +L A++ MY KCGD+ ++ VF+M+ KD+++W+T+I AM
Sbjct: 336 EIHCYVFRHW--KVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAM 393
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL LF M+++ V P+ VTF ++S CSH LV++G+ +F +M + + P
Sbjct: 394 HGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN 453
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HY+CVVD+Y RAG L EA FI+ MP+E S WGALL ACR+++N E+ ++L
Sbjct: 454 HYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEI 513
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + + N A W +A+++R ++ G+ K GCSW++V
Sbjct: 514 EPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQV 560
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 97/167 (58%), Gaps = 2/167 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RDVVSWT++ Y + GF + + VF+EM + +PN T+ ++L AC+ + L G+
Sbjct: 142 RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSG-VKPNPMTVSSILPACAELKDLKSGKE 200
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H + + R+ + V+ V +A++++Y KC V A VF+++ ++D++SW+ V++ N
Sbjct: 201 IHGF-AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 259
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ LF M +GV D+ T+ A+I C G ++ + +F+ M
Sbjct: 260 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKM 306
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 126/274 (45%), Gaps = 41/274 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-SISALS 59
+P+ D + +T+I G EA+ ++ +++ + +P+ + AC+ S AL
Sbjct: 38 IPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE-RGIKPDMPVFLAAAKACAVSGDALR 96
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ VH +TR + VGNA+I+ Y KC V A +VF+ L +D++SW+++ S
Sbjct: 97 VKE-VHDD-ATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCY 154
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLI--L 166
G R+ + +F M +GV P+ +T +++ AC+ HG V G++ L
Sbjct: 155 VKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL 214
Query: 167 F----------KAMST-----VYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMP-- 207
F K +S V++++P + V+ Y + E+ + +M
Sbjct: 215 FVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRD 274
Query: 208 -IEAEWSVWGALLNAC----RIHRNDEMFDPIRQ 236
+ A+ + W A++ C R EMF +++
Sbjct: 275 GVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 308
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
++ + +G +I + + GD A Q+F+ + D + ST+IS L +G +A++++S
Sbjct: 9 NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 68
Query: 135 MIINGVFPDDVTFIALISACSHGG 158
+ G+ PD F+A AC+ G
Sbjct: 69 LQERGIKPDMPVFLAAAKACAVSG 92
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV+W TMI A G +EA+ +F +M ++ +PN T VLS CS +
Sbjct: 376 MRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR-VQPNSVTFTGVLSGCSHSRLVEE 434
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
G + + + + + + V+++Y + G + A +
Sbjct: 435 GVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYK 473
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 181/290 (62%), Gaps = 17/290 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+D VSW +++ G+A+ G+ EEA+++F +M K E N T + +SA ++I+ + G+
Sbjct: 603 KDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAG-LEINSFTFGSAVSAAANIANVRIGKQ 661
Query: 64 VHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H I T YD V NA+I +Y KCG + D ISW+++I+G + +
Sbjct: 662 IHGMIRKTGYDSETE--VSNALITLYAKCGTI-------------DDISWNSMITGYSQH 706
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GCG +AL+LF M V P+ VTF+ ++SACSH GLVD+G+ F++MS + +VP+ +H
Sbjct: 707 GCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEH 766
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YACVVD+ GR+GLL A+ F+ EMPI+ + VW LL+AC +H+N ++ + L+ +
Sbjct: 767 YACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELE 826
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
T+ L+SN +A + +W+ ++ R ++ G+KK+ G SW+EV+ S+
Sbjct: 827 PKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSV 876
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 90/163 (55%), Gaps = 16/163 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RD VSW MI G ++ G+ EEA+ +F ++ VLSAC+ + F
Sbjct: 225 LKARDSVSWVAMISGLSQNGYEEEAMLLFCQI---------------VLSACTKVEFFEF 269
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + S V NA++ +Y + G++ A Q+F+ ++ +D +S++++ISGLA
Sbjct: 270 GKQLHGLV-LKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +AL LF M ++ PD VT +L+SAC+ G + G
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNG 371
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 118/220 (53%), Gaps = 21/220 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VS+ ++I G A++G+ A+++F++M + +P+ T+ ++LSAC+S+ AL
Sbjct: 312 MSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQ-KPDCVTVASLLSACASVGALPN 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ HSY + + ++ +V +++++YVKC D+ A + F L Y + + +
Sbjct: 371 GKQFHSY-AIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF--LCYGQLDNLN------- 420
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-LILFKAMSTVYEIVPQ 179
++ Q+F+ M I G+ P+ T+ +++ C+ G D G I + + T ++
Sbjct: 421 ------KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVY 474
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+ ++DMY + G L+ A R + E + W A++
Sbjct: 475 VS--SVLIDMYAKHGKLDHALKIFRRLK-ENDVVSWTAMI 511
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 130/273 (47%), Gaps = 11/273 (4%)
Query: 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI-STRYDL 74
Y + ++ +F +M+ + PN+ T ++L C+++ A G+ +H+ + T +
Sbjct: 413 YGQLDNLNKSFQIFTQMQ-IEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF 471
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL 134
+V V + +I+MY K G + A+++F L D++SW+ +I+G + +AL LF
Sbjct: 472 NV--YVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKE 529
Query: 135 MIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194
M G+ D++ F + ISAC+ +DQG + A S + +V +Y R G
Sbjct: 530 MQDQGIKSDNIGFASAISACAGIQALDQGRQI-HAQSCLSGYSDDLSIGNALVSLYARCG 588
Query: 195 LLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMS 253
+ EA A ++ + S W +L++ + +E + Q +NK G+ + +F S
Sbjct: 589 KVREAYAAFDQIYAKDNVS-WNSLVSGFAQSGYFEEALNIFAQ--MNKAGLEINSFTFGS 645
Query: 254 NTFAGAD--RWEDANKIRDEIRRMGLKKKTGCS 284
A A+ +I IR+ G +T S
Sbjct: 646 AVSAAANIANVRIGKQIHGMIRKTGYDSETEVS 678
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 22/209 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
MP R + W + + +F+ M TK E +E VL CS + +
Sbjct: 123 MPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM-LTKNVEFDERIFAVVLRGCSGNAVSFR 181
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
F + +H+ T S + N +I++Y K G + A +VF L +D +SW +ISGL
Sbjct: 182 FVEQIHAKTITS-GFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGL 240
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+ NG +A+ LF ++++ V F G GL+L + S
Sbjct: 241 SQNGYEEEAMLLFCQIVLSAC--TKVEFFEF-------GKQLHGLVLKQGFS-------- 283
Query: 180 TQHYAC--VVDMYGRAGLLEEAEAFIREM 206
++ Y C +V +Y R+G L AE M
Sbjct: 284 SETYVCNALVTLYSRSGNLSSAEQIFHCM 312
>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Glycine max]
Length = 651
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 180/295 (61%), Gaps = 4/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + VSWT MI YAE+G+ EA+++F ME E +P+ T++ ++S C AL
Sbjct: 318 MSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGE-KPDLVTVLALISGCGQTGALEL 376
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +Y S L + +V NA+I+MY KCG A ++F +A + ++SW+T+I+ A
Sbjct: 377 GKWIDNY-SINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACA 435
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG + AL+LF +M+ G+ P+ +TF+A++ AC+HGGLV++GL F M+ Y I P
Sbjct: 436 LNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGI 495
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY+C+VD+ GR G L EA I+ MP E + +W ALL+AC++H EM + ++L
Sbjct: 496 DHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFE 555
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN--PSIF 293
+ + M+N +A A+ WE IR ++ + ++K G S I+VN P+IF
Sbjct: 556 LEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIF 610
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 110/226 (48%), Gaps = 12/226 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R VVSW +MI YA +AV+ ++ M + P+ +T++N+LS+C AL G
Sbjct: 220 RSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFS-PDISTILNLLSSCMQPKALFHGLL 278
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VHS+ + V N +I MY KCGDV A +FN ++ K +SW+ +IS A G
Sbjct: 279 VHSH-GVKLGCDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAEKG 337
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+A+ LF+ M G PD VT +ALIS C G ++ G + Y I +
Sbjct: 338 YMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDN-----YSINNGLKDN 392
Query: 184 ACV----VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
V +DMY + G +A+ M S W ++ AC ++
Sbjct: 393 VVVCNALIDMYAKCGGFNDAKELFYTMANRTVVS-WTTMITACALN 437
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
+ +W + +G + A+ +F++M+++ PN +T VL AC+ +S L Q +H
Sbjct: 18 LFTWNSNFRHLVNQGHAQNALILFRQMKQSG-ITPNNSTFPFVLKACAKLSHLRNSQIIH 76
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+++ + + V A ++MYVKCG + A VF + +D+ SW+ ++ G A +G
Sbjct: 77 AHV-LKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFL 135
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISA 153
+ L M ++G+ PD VT + LI +
Sbjct: 136 DRLSCLLRHMRLSGIRPDAVTVLLLIDS 163
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 10/171 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW M+ G+A+ GF + + + M + P+ T++ ++ + + +L+
Sbjct: 114 MPVRDIASWNAMLLGFAQSGFLDRLSCLLRHM-RLSGIRPDAVTVLLLIDSILRVKSLTS 172
Query: 61 GQYVHSY---ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML--AYKDMISWSTV 115
V+S+ I D+SV+ N +I Y KCG++ A +F+ + + ++SW+++
Sbjct: 173 LGAVYSFGIRIGVHMDVSVA----NTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSM 228
Query: 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
I+ A +A+ + M+ G PD T + L+S+C + GL++
Sbjct: 229 IAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHGLLV 279
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGL 164
+ + +W++ L G + AL LF M +G+ P++ TF ++ AC+ L + +
Sbjct: 15 FSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQI 74
Query: 165 ILFKAMSTVYE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
I + + ++ I QT VDMY + G LE+A EMP+ + + W A+L
Sbjct: 75 IHAHVLKSCFQSNIFVQTA----TVDMYVKCGRLEDAHNVFVEMPVR-DIASWNAML 126
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 181/292 (61%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DV+SW T+I + + + VF+ M + P++ T + L+AC+ ++++S
Sbjct: 263 IEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSH 322
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+++ R L VGNA++NMY KCG +G A +F+ + + +++SW+T+I+G
Sbjct: 323 GKQIHAHL-MRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFG 381
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A++LF M +G+ PD VTFI L++AC+H GLVD+G + F +M Y I P
Sbjct: 382 NHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAPDI 441
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H++C++DM GRAG L EAE ++R+ P + V +LL+A R+H + + + + + L+
Sbjct: 442 EHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDVVIGERLAKWLLK 501
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ V+ + L+SN +A W+ + R ++ GLKK+ G S IEVN S+
Sbjct: 502 LQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSGLKKEPGHSLIEVNGSV 553
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++++VSW+ MI GY + G + A+ ++ +M PNE +V+SAC+S+SA++
Sbjct: 64 MFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLV----PNEYVFASVISACASLSAVTL 119
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +HS S ++ + V N++I+MY+KC A+ VF + +S++ +I+G
Sbjct: 120 GQKIHSR-SLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFV 178
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N + L+ F LM G+ PD F+ ++ C+ + +G L TV + T
Sbjct: 179 ENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELH--CQTVKLNLDST 236
Query: 181 QHYA-CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
++ MY L++EAE R + E + W L+ AC H +D
Sbjct: 237 PFIGNVIITMYSELNLIQEAEKAFRLIE-EKDVISWNTLIAACS-HCDDH 284
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 44 TLVNVLSACSSISALSFGQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
TL ++L CS AL G +H+ + T+ D+ +SN V+NMY KCG A QV
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSN----HVLNMYAKCGHTTFARQV 60
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + K+++SWS +ISG G + A+ L+S M + P++ F ++ISAC+ V
Sbjct: 61 FDEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFL---VPNEYVFASVISACASLSAV 117
Query: 161 DQGL-ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G I +++ YE + + ++ MY + +A + P E + AL+
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSN--SLISMYMKCNQCSDALSVFTNTP-EPNCVSYNALI 174
Query: 220 NAC----RIHRNDEMFDPIRQE-LVNKKGVSVGTFALMSNT 255
++ R E F +RQ+ L+ + +G + + T
Sbjct: 175 TGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTT 215
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 36/255 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ + VS+ +I G+ E E + F+ M + + P+ + VL C++ L G
Sbjct: 163 PEPNCVSYNALITGFVENQQLERGLEFFKLM-RQQGLIPDRFAFMGVLGICTTTENLKRG 221
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + + +L + +GN +I MY + + A + F ++ KD+ISW+T+I+ +
Sbjct: 222 AELHCQ-TVKLNLDSTPFIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSH 280
Query: 122 NGCGRQALQLFSLMI-INGVFPDDVTFIALISAC------SHGGLVDQGLI---LFKAMS 171
+ L++F M V PDD TF + ++AC SHG + L+ L++ +
Sbjct: 281 CDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG 340
Query: 172 T----------------VYEIVPQTQHYACV-----VDMYGRAGLLEEAEAFIREMP--- 207
Y+I + H+ V + +G GL E A +M
Sbjct: 341 VGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASG 400
Query: 208 IEAEWSVWGALLNAC 222
I + + LL AC
Sbjct: 401 IRPDSVTFIGLLTAC 415
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 176/288 (61%), Gaps = 2/288 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+V WT M+ G+ + G EEA++++ M+K + P+++T+ + L AC+ I+AL G+ +
Sbjct: 280 DIVLWTAMVSGHVQNGEHEEALTLYARMDK-EGIIPSKSTIASGLRACAGIAALEPGKQL 338
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ I +Y L + VG+A+ MY KCG++ + VF + +D+I+W+++ISG + NGC
Sbjct: 339 HTQI-VKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGC 397
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G AL LF M + G PD++TFI ++ ACSH GLVD+G F M+ Y + P+ HYA
Sbjct: 398 GNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYA 457
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+VD+ RAG+L+EA+ FI + I+ +W +L ACR R+ ++ + L+
Sbjct: 458 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTG 517
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ L+SN +A +W D ++R +R G+ K GCSW+E+N +
Sbjct: 518 DSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRV 565
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 137/281 (48%), Gaps = 10/281 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ SW+TM+ GYA EEA +F+ M + +E +E VLSA S L
Sbjct: 73 MPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLM 132
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H I L + V N+++ MY K G +G A VF ++ I+WS +I+G A
Sbjct: 133 GEQMHGLIVKDGLLDFVS-VENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYA 191
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A+ +FS M G P + TF+ +++A S G + G +A + ++ +
Sbjct: 192 QNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK---QAHGLMVKLGFEV 248
Query: 181 QHY--ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
Q Y + +VDMY + G + +A+ ++ E + +W A+++ + +
Sbjct: 249 QIYVKSALVDMYAKCGCIADAKEGFDQL-YEVDIVLWTAMVSG-HVQNGEHEEALTLYAR 306
Query: 239 VNKKGV--SVGTFALMSNTFAGADRWEDANKIRDEIRRMGL 277
++K+G+ S T A AG E ++ +I + GL
Sbjct: 307 MDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGL 347
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P RDV++W ++I G+++ G A+ +F+EM K + P+ T +N+L ACS + +
Sbjct: 377 IPDRDVIAWNSIISGFSQNGCGNGALDLFEEM-KMEGTIPDNITFINILCACSHMGLVDR 435
Query: 61 GQYVHSYISTRYDLS 75
G S ++ Y L+
Sbjct: 436 GWEYFSLMTKDYGLT 450
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 27/139 (19%)
Query: 75 SVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
+VSN+ V +++NMY K G V A +VF+ + ++ SWST+++G A C +A LF
Sbjct: 43 AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR 102
Query: 134 LMIINGVFPDDVTFI--ALISACS-----------HGGLVDQGLILFKAMSTVYEIVPQT 180
LM + + F+ A++SA S HG +V GL+ F ++
Sbjct: 103 LM-LEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVEN-------- 153
Query: 181 QHYACVVDMYGRAGLLEEA 199
+V MY +AG + A
Sbjct: 154 ----SLVTMYAKAGCMGAA 168
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 173/292 (59%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSW MIGGY++ G EEAV++F EM + PNE+T VL++ +S L
Sbjct: 135 MPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGG-VSPNESTFPCVLTSVASAGTLGV 193
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + ++ + +GN++++ Y +CG + ++ F + K+++SW+ +I G A
Sbjct: 194 GRSIHAS-AIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYA 252
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G +AL + +M G+ PD+VT + L+ C+H GLVD+G LFK + +
Sbjct: 253 QNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKP 312
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYACVVD+ RA +EA F+ E+P E W ALL C+IH N ++ + + + +
Sbjct: 313 EHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIHWNSKLAESVAKRIRA 372
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
++ L+SN ++ + W+ + +R EI+ GLK+ TGCSWIEV +
Sbjct: 373 LDPKDTSSYILLSNVYSASGSWQSVSMVRWEIKEKGLKRITGCSWIEVQEKV 424
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 40/234 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS--ISAL 58
MP RDV+S T IG G +A+++F + A PNE T VL + ++ + A
Sbjct: 1 MPHRDVISATAAIGALTRGGRHRDALALFSRVLADGVA-PNEFTFGTVLRSATALRVRAP 59
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------G 95
G +H+ + + L + VG+A+++ Y K G + G
Sbjct: 60 RVGVQLHA-CAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIAG 118
Query: 96 I--------AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
+ A ++F + ++++SW+ +I G + G G +A+ LF M GV P++ TF
Sbjct: 119 LLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTF 178
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY--ACVVDMYGRAGLLEEA 199
++++ + G + G + ++ + + + Y +V Y R G LE++
Sbjct: 179 PCVLTSVASAGTLGVGRSIH---ASAIKFLGKLDVYIGNSLVSFYARCGSLEDS 229
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 181/291 (62%), Gaps = 2/291 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISA-LSFGQ 62
++VVSWT +I GY + G + A+++F +M + + EPNE T +VL+AC++ +A + G+
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGK 418
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
HS S + S + V +A++ MY K G++ A +VF +D++SW+++ISG A +
Sbjct: 419 QFHS-CSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQH 477
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
GCG+++L++F M + D +TFI +ISAC+H GLV++G F M Y IVP +H
Sbjct: 478 GCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEH 537
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y+C+VD+Y RAG+LE+A I +MP A ++W LL ACR+H N ++ + ++L++ +
Sbjct: 538 YSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQ 597
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ L+SN +A A W++ K+R + +KK+ G SWIEV F
Sbjct: 598 PQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTF 648
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++VVSWT+++ GY + G E+A+ +F +M+ + +PN T VL ++ A+
Sbjct: 153 MRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQ-LEGIKPNPFTFAAVLGGLAADGAVEK 211
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH+ + + L + VGN+++NMY K V A VF+ + ++ +SW+++I+G
Sbjct: 212 GVQVHTMV-IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFV 270
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
NG +A +LF M + GV F +I C++
Sbjct: 271 TNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 130/256 (50%), Gaps = 19/256 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+ VSW +MI G+ G EA +F M + + + + V+ C++I +SF
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRM-RLEGVKLTQTIFATVIKLCANIKEMSF 312
Query: 61 GQYVHSYI---STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVI 116
+ +H + + +DL++ A++ Y KC ++ A ++F M+ ++++SW+ +I
Sbjct: 313 AKQLHCQVIKNGSDFDLNIKT----ALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAII 368
Query: 117 SGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISAC-SHGGLVDQGLILFKAMSTVY 174
SG NG +A+ LF M GV P++ TF ++++AC + V+QG F + S
Sbjct: 369 SGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGK-QFHSCSIKS 427
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEA-EAFIREMPIEAEWSVWGALLNACRIH----RNDE 229
+ +V MY + G +E A E F R+ ++ + W ++++ H ++ +
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESANEVFKRQ--VDRDLVSWNSMISGYAQHGCGKKSLK 485
Query: 230 MFDPIRQELVNKKGVS 245
+F+ +R + + G++
Sbjct: 486 IFEEMRSKNLELDGIT 501
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 103/192 (53%), Gaps = 19/192 (9%)
Query: 23 EEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGQYVHSY-ISTRYDLSVSNLV 80
+EA+++F + ++ P + ++L VL C + G+ VH I + VS V
Sbjct: 74 KEALNLFLGLRRS--GSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVS--V 129
Query: 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140
G ++++MY+K V +VF+ + K+++SW+++++G NG QAL+LFS M + G+
Sbjct: 130 GTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGI 189
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAG 194
P+ TF A++ + G V++G+ V+ +V ++ + + V+MY ++
Sbjct: 190 KPNPFTFAAVLGGLAADGAVEKGV-------QVHTMVIKSGLDSTIFVGNSMVNMYSKSL 242
Query: 195 LLEEAEAFIREM 206
++ +A+A M
Sbjct: 243 MVSDAKAVFDSM 254
>gi|242071929|ref|XP_002451241.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
gi|241937084|gb|EES10229.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
Length = 505
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 168/279 (60%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W +I G A G + AV F+ M + E P++ TLV VL AC G++ H Y
Sbjct: 216 WNLIITGCARSGRDDMAVQCFERMVREGEVAPDDGTLVAVLPACGKTGNAGAGRWAHEYA 275
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
L + V NAV++MY KCGDV A +VF + ++SW+ +I+G ++NG G +
Sbjct: 276 KKSGLLEGTVHVANAVMDMYCKCGDVDSAREVFMTTPQRSVVSWNAMITGFSLNGHGVEG 335
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+ LF M+ +GV P+ VTF+A++ C+H G VD G +F++M + + I P +HY C+VD
Sbjct: 336 IDLFQKMMRHGVEPNAVTFLAVLGCCAHAGAVDIGREIFQSMVSEHGIEPAIEHYGCMVD 395
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT 248
++GR GLLEEA A I+ MP++ ++WGALL+ACR H + +EL+N + + G
Sbjct: 396 LFGRCGLLEEAHALIQGMPMKPNAAIWGALLSACRAHAGLGTAEVALKELINLEPWNSGN 455
Query: 249 FALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ L++N +A +RWE+A ++R +RRM + K G S +E
Sbjct: 456 YVLLANLYAETERWEEAGEVRRLMRRMSVNKAPGQSVME 494
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+R VVSW MI G++ G E + +FQ+M + EPN T + VL C+ A+ G
Sbjct: 312 PQRSVVSWNAMITGFSLNGHGVEGIDLFQKMMR-HGVEPNAVTFLAVLGCCAHAGAVDIG 370
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92
+ + + + + + + +++++ +CG
Sbjct: 371 REIFQSMVSEHGIEPAIEHYGCMVDLFGRCG 401
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 170/289 (58%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP D VSWT +I G+ + G +EA+ F+ M EP+ TL+ V+SAC+ + AL
Sbjct: 164 MPGPDKVSWTALIDGFVKNGRHDEAIDCFRAM-LLDSVEPDYVTLIAVVSACAEVGALGL 222
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH + R L + V N++I+MY +CG V +A QVF+ + + ++SW+++I GLA
Sbjct: 223 GMWVHRLV-LRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLA 281
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +A++LF M G PD VT +++ACSH GL + GL + M+T Y I +
Sbjct: 282 ANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARM 341
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY CVVD+ GRAG L+EA + MP+ V GALL CR+H + +M + + Q L
Sbjct: 342 EHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQLMQHLFE 401
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ L+SN +A +W+ A K+R ++ G+KK+ G S +E++
Sbjct: 402 LDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVEID 450
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 106/236 (44%), Gaps = 45/236 (19%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFG 61
RDVVSWT+ I A +G A + M + A PN+ TL+ VLSAC+ +
Sbjct: 29 PRDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLA 88
Query: 62 QYVHSYISTR-YDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
+ + + R L S+L+ + Y+ +A+Q+F+ + + +++++T++SGL
Sbjct: 89 RPLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGL 148
Query: 120 AMNGC-----------------------------GR--QALQLFSLMIINGVFPDDVTFI 148
NG GR +A+ F M+++ V PD VT I
Sbjct: 149 MRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLI 208
Query: 149 ALISACSHGGLVDQG-----LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
A++SAC+ G + G L+L + + + ++DMY R G ++ A
Sbjct: 209 AVVSACAEVGALGLGMWVHRLVLRQGLERNVRVA------NSLIDMYARCGQVKLA 258
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 179/292 (61%), Gaps = 3/292 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD +W MI + +G EA+ +F M++ A N ++++VLS C+S+++L
Sbjct: 295 MKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVA-LNFPSMISVLSVCASLASLDH 353
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + R + V + +I MYVKCGD+ A +FN +KD++ W+++I+G +
Sbjct: 354 GRQVHARL-VRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYS 412
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +AL +F M +GV PD+VTFI ++SACS+ G V +G +F+AM Y++ P
Sbjct: 413 QHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGI 472
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++EA + +MP+E + VWGALL ACR H ++ + ++L
Sbjct: 473 EHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAK 532
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+S+ +A RW D +R +I R + K GCSWIEV +
Sbjct: 533 LEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVI-KFPGCSWIEVEKKV 583
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 108/222 (48%), Gaps = 24/222 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT+M+ GY + G EEA +F EM + N + ++ S +
Sbjct: 109 MPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR-----NVVSWTVMIGGLLKESRIDD 163
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + I + + V+N++G Y + G + A ++F+ + +++ +W+T++SG A
Sbjct: 164 AKKLFDMIPEKDVVVVTNMIGG-----YCQVGRLDEARELFDEMKVRNVFTWTTMVSGYA 218
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG A +LF +M ++V++ A++ + G + + LF+AM + +
Sbjct: 219 KNGRVDVARKLFEVMPER----NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIV---- 270
Query: 181 QHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
AC ++ +G AG + A M E + W A++
Sbjct: 271 ---ACNEMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMIK 308
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 118/271 (43%), Gaps = 37/271 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VS+ MI GY + G +A VF M + NV+S S +
Sbjct: 78 MPQRNTVSFNGMISGYVKNGMVADARKVFDVMPER-----------NVVSWTSMVRGYVQ 126
Query: 61 GQYVHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V +++ N+V +I +K + A ++F+M+ KD++ + +I G
Sbjct: 127 EGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGY 186
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A +LF M + VF T+ ++S + G VD LF+ M E+
Sbjct: 187 CQVGRLDEARELFDEMKVRNVF----TWTTMVSGYAKNGRVDVARKLFEVMPERNEV--- 239
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN---ACRIHRNDEMFDPIRQ 236
+ ++ Y ++G ++EA MP++ + +L A +HR MF+ +++
Sbjct: 240 --SWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKE 297
Query: 237 ----------ELVNKKGV---SVGTFALMSN 254
++ +KG+ ++G FA M
Sbjct: 298 RDEGTWNAMIKVFERKGLDLEALGLFARMQR 328
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 10/163 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+V +WTTM+ GYA+ G + A +F+ M E NE + +L + +
Sbjct: 202 MKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM-----PERNEVSWTAMLMGYTQSGRMKE 256
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + ++ ++ N +I + G++ A +F + +D +W+ +I
Sbjct: 257 AFELFEAMPVKWIVAC-----NEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFE 311
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
G +AL LF+ M GV + + I+++S C+ +D G
Sbjct: 312 RKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 185/292 (63%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++V+SW+ MI GYA+ +EA+++F++M + +P+ ++V +SACS + AL
Sbjct: 265 MLQKNVISWSIMIDGYAQHRDSKEALNLFRQM-LCQGIKPDRVSVVGAVSACSQLGALDQ 323
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y+ R + + +V A+++MY+KCG A ++FN + ++++SW+ +I GL
Sbjct: 324 GRWIHLYMK-RNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLG 382
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G++AL+ F+ M + + DD+ F+ ++ ACSH LV +GL +F M VY + P+
Sbjct: 383 MNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKL 442
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L++ + I+ MP++ ++WG+LL ACRIH+N + + + + L
Sbjct: 443 EHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAE 502
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + LMSN +A WE +IR ++ +KK G S IEV+ ++
Sbjct: 503 LKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNV 554
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 24/212 (11%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++D+VSW +M+GGY G E A ++F EM + +V+S SI +G+
Sbjct: 173 EKDLVSWNSMLGGYVWCGEMENAQNMFDEMPER-----------DVVSW--SIMIDGYGK 219
Query: 63 YVHSYISTR--YD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
+ R +D + +LV N++I+ Y K G++ +A ++F+ + K++ISWS +I G
Sbjct: 220 KMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDG 279
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL---ILFKAMSTVYE 175
A + ++AL LF M+ G+ PD V+ + +SACS G +DQG + K + +
Sbjct: 280 YAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLD 339
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
IV QT +VDMY + G +EA MP
Sbjct: 340 IVVQT----ALVDMYLKCGSRDEARRIFNSMP 367
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 14/231 (6%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TM+ Y E E A+ + EM + K + T VL AC ++ L G V
Sbjct: 79 NTMVKCYTESSTPERALRFYAEMRR-KGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAV 137
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R V N +I+MY +CG+ G A VF+ + KD++SW++++ G G A
Sbjct: 138 KR-GFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQ 196
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHG-GLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
+F M D V++ +I G V++ + F +M T ++V + ++D
Sbjct: 197 NMFDEMPER----DVVSWSIMIDGYGKKMGEVNRARVFFDSMPT-RDLVS----WNSMID 247
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-DEMFDPIRQEL 238
Y + G +E A +M ++ W +++ HR+ E + RQ L
Sbjct: 248 GYAKVGEMEVAREIFDKM-LQKNVISWSIMIDGYAQHRDSKEALNLFRQML 297
>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g17630
gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 731
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 184/291 (63%), Gaps = 2/291 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +VV+WT++I G +G ++++ F++M+ +K N T+ +LS C+ + AL+ G+
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSK-VLANSVTICCILSICAELPALNLGR 454
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H ++ R +S + LV NA++NMY KCG + VF + KD+ISW+++I G M+
Sbjct: 455 EIHGHV-IRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMH 513
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL +F MI +G PD + +A++SACSH GLV++G +F +MS + + PQ +H
Sbjct: 514 GFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEH 573
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GR G L+EA ++ MP+E + V GALLN+CR+H+N ++ + I +L +
Sbjct: 574 YACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLE 633
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN ++ RWE++ +R ++ LKK +G SWIEV +
Sbjct: 634 PERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKY 684
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 43/210 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL----------- 49
MP R+ +SW MI G+++ CE AV +F+ M++ +E +P+E T +VL
Sbjct: 219 MPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQR-EEFKPDEVTWTSVLSCHSQCGKFED 277
Query: 50 ------------------------SACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAV 84
S C+ + ALS + VH Y I ++ + + NA+
Sbjct: 278 VLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPS--RNAL 335
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS----LMIINGV 140
I++Y K G V A +F + K + SW+++I+ G +AL LFS + + V
Sbjct: 336 IHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNV 395
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ VT+ ++I C+ G D L F+ M
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W +++ G E A+ +++ M + + + L +L AC + +
Sbjct: 122 DLRLWNSILKANVSHGLYENALELYRGM-RQRGLTGDGYILPLILRACRYLGRFGLCRAF 180
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + + L + V N ++ +Y K G +G A +F + ++ +SW+ +I G +
Sbjct: 181 HTQV-IQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYD 239
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
A+++F M PD+VT+ +++S S G + L F M
Sbjct: 240 CESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLM 285
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDVV++ +M+ GY + + EA+ +F +MEK P+E TLV VLSA + + LS
Sbjct: 311 MPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSK 370
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+H Y + L + +G A+I+MY KCG + A+ VF + K + W+ +I GLA
Sbjct: 371 AMDMHLYTVEKKFL-LGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLA 429
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G A + + + PDD+TF+ +++ACSH GLV +GL+ F+ M ++I P+
Sbjct: 430 IHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRL 489
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHY C+VD+ R+G +E A+ I EMPIE +W L AC H+ E + + + L+
Sbjct: 490 QHYGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLIL 549
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + ++ L+SN +A W++ ++R ++ ++K GCSWIE++ S+
Sbjct: 550 QAGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSV 601
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 37/233 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D W +I ++ +A+ +F M K ++ +L VL ACS + + G
Sbjct: 87 DPFLWNAVIKSHSHGVEPRKALLLFFLMLKNG-VSVDKFSLSLVLKACSRLGFVKEGMQX 145
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H ++ + + + N +I +Y+KCG +G A QVF+ ++ +D +S++++I G G
Sbjct: 146 HGFLR-KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGL 204
Query: 125 GRQALQLFSLM------------IINGV----------------FP--DDVTFIALISAC 154
A +LF LM +ING P D +++ +LI
Sbjct: 205 IESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGY 264
Query: 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
G ++ LF M ++V +A +VD Y + G + +A++ +MP
Sbjct: 265 VKHGRIEDAKDLFDKMPR-RDVVT----WATMVDGYAKLGFVHQAKSLFDQMP 312
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 114/271 (42%), Gaps = 46/271 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VS+ +MI GY + G E A +F M K+ N++S S I+ +
Sbjct: 184 MSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKK---------NLISWNSMINGYAQ 234
Query: 61 GQYVHSYISTRYD-LSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
S +D + +L+ N++I+ YVK G + A +F+ + +D+++W+T++ G
Sbjct: 235 RADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDG 294
Query: 119 LAMNGCGRQALQLFSLM--------------------------IING------VFPDDVT 146
A G QA LF M I N + PD+ T
Sbjct: 295 YAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETT 354
Query: 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+ ++SA + G + + + + + + + + ++DMY + G +++A +
Sbjct: 355 LVIVLSAIAQLGRLSKAMDM-HLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERI 413
Query: 207 PIEAEWSVWGALLNACRIH-RNDEMFDPIRQ 236
W A++ IH + FD + Q
Sbjct: 414 E-NKSIDHWNAMIGGLAIHGLGESAFDMLLQ 443
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 37/201 (18%)
Query: 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-- 164
+D W+ VI + R+AL LF LM+ NGV D + ++ ACS G V +G+
Sbjct: 86 EDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQX 145
Query: 165 --ILFKA------------------------MSTVYEIVPQTQ--HYACVVDMYGRAGLL 196
L K V++ + Q Y ++D Y + GL+
Sbjct: 146 HGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLI 205
Query: 197 EEAEAFIREMPIEAEWSV-WGALLNACRIHRND--EMFDPIRQELVNKKGVSVGTFALMS 253
E A MP E + + W +++N R D ++ + E+ K +S + +
Sbjct: 206 ESARELFDLMPSEKKNLISWNSMING-YAQRADGVDIASNLFDEMPEKDLISWNS---LI 261
Query: 254 NTFAGADRWEDANKIRDEIRR 274
+ + R EDA + D++ R
Sbjct: 262 DGYVKHGRIEDAKDLFDKMPR 282
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,498,122,334
Number of Sequences: 23463169
Number of extensions: 173324761
Number of successful extensions: 484225
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7527
Number of HSP's successfully gapped in prelim test: 2623
Number of HSP's that attempted gapping in prelim test: 385503
Number of HSP's gapped (non-prelim): 44943
length of query: 293
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 152
effective length of database: 9,050,888,538
effective search space: 1375735057776
effective search space used: 1375735057776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)