BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036775
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 15/183 (8%)

Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
           +N+L Y  + S +   +  + N    +   +F  MI++ V P++ TF             
Sbjct: 64  YNVLLY--VCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDP 121

Query: 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA---EAFIREMPIEAEWSVWGA 217
           +    + K M   + I P+ + Y   +  + R G  ++A   +A + E  +  E     A
Sbjct: 122 EMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180

Query: 218 LLNACRIHRN-DEMFDPIRQELVNKKGVSVGTFALMSNTF-------AGADRWEDANKIR 269
           LL      +N D+++  +++     + VS  TF ++   F        G  +W D  KIR
Sbjct: 181 LLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKW-DVKKIR 239

Query: 270 DEI 272
           D +
Sbjct: 240 DAV 242


>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
 pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
          Length = 278

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 63  YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
           Y+HS+     DL++SNL+     NM +K  D G+A Q+
Sbjct: 127 YLHSHGILHRDLTLSNLL--LTRNMNIKIADFGLATQL 162


>pdb|2VVW|A Chain A, Structure Of Vaccinia Virus Protein A52
 pdb|2VVW|B Chain B, Structure Of Vaccinia Virus Protein A52
 pdb|2VVX|A Chain A, Structure Of Vaccinia Virus Protein A52
 pdb|2VVX|B Chain B, Structure Of Vaccinia Virus Protein A52
          Length = 162

 Score = 28.9 bits (63), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 16/70 (22%)

Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
           TVY+ +      ACVVD++    L                +S W   L A ++  ND M 
Sbjct: 95  TVYDCISMIGLCACVVDVWRNEKL----------------FSRWKYCLRAIKLFINDHML 138

Query: 232 DPIRQELVNK 241
           D I+  L N+
Sbjct: 139 DKIKSILQNR 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,501,131
Number of Sequences: 62578
Number of extensions: 326644
Number of successful extensions: 832
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 5
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)