BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036775
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 259 bits (663), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 198/322 (61%), Gaps = 31/322 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQ---------------------EMEKTKE-- 37
MP RD V+ T MI Y+E GF +EA+ +FQ EM K E
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 38 -------AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90
NE T V VLSACS + AL G++VHS++ + + +SN VGNA+INMY +
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR-MELSNFVGNALINMYSR 302
Query: 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150
CGD+ A +VF ++ KD+IS++T+ISGLAM+G +A+ F M+ G P+ VT +AL
Sbjct: 303 CGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVAL 362
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210
++ACSHGGL+D GL +F +M V+ + PQ +HY C+VD+ GR G LEEA FI +PIE
Sbjct: 363 LNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEP 422
Query: 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270
+ + G LL+AC+IH N E+ + I + L + GT+ L+SN +A + +W+++ +IR+
Sbjct: 423 DHIMLGTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRE 482
Query: 271 EIRRMGLKKKTGCSWIEVNPSI 292
+R G++K+ GCS IEV+ I
Sbjct: 483 SMRDSGIEKEPGCSTIEVDNQI 504
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 35/214 (16%)
Query: 44 TLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN 102
TL++VL +C +I+ + +H+ I T +D V +I + V A VF+
Sbjct: 31 TLISVLRSCKNIAHVP---SIHAKIIRTFHDQDA--FVVFELIRVCSTLDSVDYAYDVFS 85
Query: 103 MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS------- 155
++ ++ ++ +I G +G + L+ MI N V PD+ +++ AC
Sbjct: 86 YVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREI 145
Query: 156 HGGLVDQGL-----ILFKAM------------STVYEIVPQTQHYACVV--DMYGRAGLL 196
H ++ G + K M +++ +P H A V + Y G +
Sbjct: 146 HAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFI 205
Query: 197 EEAEAFIREMPIEAEWSVWGALLNACRIHRNDEM 230
+EA +++ I+ + W A+++ + RN EM
Sbjct: 206 KEALELFQDVKIK-DTVCWTAMIDG--LVRNKEM 236
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 123/289 (42%), Positives = 186/289 (64%), Gaps = 1/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W +I Y + G EA+ VF E++ K + N+ TLV+ LSAC+ + AL
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSYI ++ + ++ V +A+I+MY KCGD+ + +VFN + +D+ WS +I GLA
Sbjct: 384 GRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+GCG +A+ +F M V P+ VTF + ACSH GLVD+ LF M + Y IVP+
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEE 502
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GR+G LE+A FI MPI SVWGALL AC+IH N + + L+
Sbjct: 503 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLE 562
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G L+SN +A +WE+ +++R +R GLKK+ GCS IE++
Sbjct: 563 LEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEID 611
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 145/292 (49%), Gaps = 41/292 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DVVSW +MI G+ ++G ++A+ +F++ME +++ + + T+V VLSAC+ I L F
Sbjct: 192 IKEKDVVSWNSMINGFVQKGSPDKALELFKKME-SEDVKASHVTMVGVLSACAKIRNLEF 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIA 97
G+ V SYI ++V+ + NA+++MY KCG + G A
Sbjct: 251 GRQVCSYIEEN-RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309
Query: 98 I--------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLF-SLMIINGVFPDDVTFI 148
I +V N + KD+++W+ +IS NG +AL +F L + + + +T +
Sbjct: 310 ISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLV 369
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
+ +SAC+ G ++ G + + + I + ++ MY + G LE++ +
Sbjct: 370 STLSACAQVGALELGRWIHSYIKK-HGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE- 427
Query: 209 EAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS-VGTFALMSNT 255
+ + VW A++ +H +MF +++ V GV+ F S+T
Sbjct: 428 KRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHT 479
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 3/229 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+PK + +W T+I YA ++ F +M + PN+ T ++ A + +S+LS
Sbjct: 90 IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H ++ + + V N++I+ Y CGD+ A +VF + KD++SW+++I+G
Sbjct: 150 GQSLHG-MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 208
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +AL+LF M V VT + ++SAC+ ++ G + + V T
Sbjct: 209 QKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLT 268
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
A ++DMY + G +E+A+ M E + W +L+ I + E
Sbjct: 269 LANA-MLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYE 315
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 245 bits (625), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 189/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P ++VV+WT +I GYAE+G +EA + +M + + + A ++++L+AC+ LS
Sbjct: 275 LPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASG-LKFDAAAVISILAACTESGLLSL 333
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS I R +L + V NA+++MY KCG++ A VFN + KD++SW+T++ GL
Sbjct: 334 GMRIHS-ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G G++A++LFS M G+ PD VTFIA++ +C+H GL+D+G+ F +M VY++VPQ
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQV 452
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR G L+EA ++ MP+E +WGALL ACR+H ++ + LV
Sbjct: 453 EHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVK 512
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
G ++L+SN +A A+ WE IR +++ MG++K +G S +E+ I
Sbjct: 513 LDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGI 564
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 124/251 (49%), Gaps = 18/251 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD VSW +M+GG + G +A +F EM + N T+++ + C +S +F
Sbjct: 180 MSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWN--TMLDGYARCREMSK-AF 236
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--LAYKDMISWSTVISG 118
+ + R +S S +V Y K GD+ +A +F+ L K++++W+ +I+G
Sbjct: 237 ELF--EKMPERNTVSWSTMVMG-----YSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G ++A +L M+ +G+ D I++++AC+ GL+ G+ + + +
Sbjct: 290 YAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKR-SNLGS 348
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRND----EMFDPI 234
++DMY + G L++A ++P + + W +L+ +H + E+F +
Sbjct: 349 NAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGHGKEAIELFSRM 407
Query: 235 RQELVNKKGVS 245
R+E + V+
Sbjct: 408 RREGIRPDKVT 418
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 32/205 (15%)
Query: 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD 108
L C++++ + + +H+ I R +L + +I+ C +A++VFN + +
Sbjct: 26 LPKCANLNQV---KQLHAQI-IRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPN 81
Query: 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-----------HG 157
+ +++I A N QA +FS M G+F D+ T+ L+ ACS H
Sbjct: 82 VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141
Query: 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL--EEAEAFIREMPIE--AEW- 212
+ GL S +Y VP ++D Y R G L +A +M W
Sbjct: 142 HIEKLGL-----SSDIY--VPNA-----LIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 213 SVWGALLNACRIHRNDEMFDPIRQE 237
S+ G L+ A + +FD + Q
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQR 214
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 244 bits (623), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 185/292 (63%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +D++SW T+IGGY++ + EA+S+F + + K P+E T+ VL AC+S+SA
Sbjct: 458 MRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDK 517
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R V N++++MY KCG + +A +F+ +A KD++SW+ +I+G
Sbjct: 518 GREIHGYI-MRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYG 576
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G++A+ LF+ M G+ D+++F++L+ ACSH GLVD+G F M +I P
Sbjct: 577 MHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VDM R G L +A FI MPI + ++WGALL CRIH + ++ + + +++
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + LM+N +A A++WE ++R I + GL+K GCSWIE+ +
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 748
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 8/199 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VVS+T+MI GYA G EAV +F+EME+ + P+ T+ VL+ C+ L
Sbjct: 357 MSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDE 415
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I DL V NA+++MY KCG + A VF+ + KD+ISW+T+I G +
Sbjct: 416 GKRVHEWIKEN-DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYS 474
Query: 121 MNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEIVP 178
N +AL LF+L++ F PD+ T ++ AC+ D+G I M Y
Sbjct: 475 KNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY---F 531
Query: 179 QTQHYA-CVVDMYGRAGLL 196
+H A +VDMY + G L
Sbjct: 532 SDRHVANSLVDMYAKCGAL 550
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 117/215 (54%), Gaps = 15/215 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV+SW ++I GY G E+ +SVF +M E + AT+V+V + C+ +S
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQM-LVSGIEIDLATIVSVFAGCADSRLISL 314
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VHS I + S + N +++MY KCGD+ A VF ++ + ++S++++I+G A
Sbjct: 315 GRAVHS-IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYA 373
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A++LF M G+ PD T A+++ C+ L+D+G V+E + +
Sbjct: 374 REGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-------KRVHEWIKEN 426
Query: 181 QH------YACVVDMYGRAGLLEEAEAFIREMPIE 209
++DMY + G ++EAE EM ++
Sbjct: 427 DLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 103/198 (52%), Gaps = 3/198 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ A+ G ++ +F++M + E + T V + SS+ ++ G+ +H +I
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFI 221
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
+ N VGN+++ Y+K V A +VF+ + +D+ISW+++I+G NG +
Sbjct: 222 -LKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
L +F M+++G+ D T +++ + C+ L+ G + ++ + + ++D
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLD 339
Query: 189 MYGRAGLLEEAEAFIREM 206
MY + G L+ A+A REM
Sbjct: 340 MYSKCGDLDSAKAVFREM 357
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R V T + + E G E AV + K + +P TL +VL C+ +L G+
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLLCVSGKW-DIDPR--TLCSVLQLCADSKSLKDGKE 115
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
V ++I + SNL G+ + MY CGD+ A +VF+ + + + W+ +++ LA +G
Sbjct: 116 VDNFIRGNGFVIDSNL-GSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACS-----HGGLVDQGLIL 166
++ LF M+ +GV D TF + + S HGG G IL
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 187/289 (64%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++DVV W MIGG + ++A+++FQEM+ T +P+E T+++ LSACS + AL
Sbjct: 349 MEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQ-TSNTKPDEITMIHCLSACSQLGALDV 407
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G ++H YI +Y LS++ +G ++++MY KCG++ A+ VF+ + ++ ++++ +I GLA
Sbjct: 408 GIWIHRYIE-KYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F+ MI G+ PD++TFI L+SAC HGG++ G F M + + + PQ
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+ +VD+ GRAGLLEEA+ + MP+EA+ +VWGALL CR+H N E+ + ++L+
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLE 586
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+ + A+ WEDA + R + G++K GCS IEVN
Sbjct: 587 LDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVN 635
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 34/229 (14%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P RD+VSW +I GY + G E+A+ V++ ME ++ +P++ T++ ++S+CS + L+ G
Sbjct: 218 PVRDLVSWNCLINGYKKIGEAEKAIYVYKLME-SEGVKPDDVTMIGLVSSCSMLGDLNRG 276
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + Y+ L ++ + NA+++M+ KCGD+ A ++F+ L + ++SW+T+ISG A
Sbjct: 277 KEFYEYVKEN-GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYAR 335
Query: 122 NGC-------------------------------GRQALQLFSLMIINGVFPDDVTFIAL 150
G G+ AL LF M + PD++T I
Sbjct: 336 CGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHC 395
Query: 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
+SACS G +D G+ + + + Y + +VDMY + G + EA
Sbjct: 396 LSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEA 443
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 106/200 (53%), Gaps = 8/200 (4%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNEATLVNVLSACSSISALSFGQ 62
++ SW I G++E +E+ ++++M + E+ P+ T + C+ + S G
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ ++ + L + + V NA I+M+ CGD+ A +VF+ +D++SW+ +I+G
Sbjct: 177 MILGHV-LKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKI 235
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST--VYEIVPQT 180
G +A+ ++ LM GV PDDVT I L+S+CS G +++G ++ + + +P
Sbjct: 236 GEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 295
Query: 181 QHYACVVDMYGRAGLLEEAE 200
++DM+ + G + EA
Sbjct: 296 N---ALMDMFSKCGDIHEAR 312
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 178/288 (61%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD VSW MI GY++ G EA+ +F +ME+ + N ++ + LS C+ + AL
Sbjct: 369 MPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER-EGGRLNRSSFSSALSTCADVVALEL 427
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H + + VGNA++ MY KCG + A +F +A KD++SW+T+I+G +
Sbjct: 428 GKQLHGRL-VKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 486
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G AL+ F M G+ PDD T +A++SACSH GLVD+G F M+ Y ++P +
Sbjct: 487 RHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNS 546
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYAC+VD+ GRAGLLE+A ++ MP E + ++WG LL A R+H N E+ + ++
Sbjct: 547 QHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFA 606
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A + RW D K+R +R G+KK G SWIE+
Sbjct: 607 MEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RDV SW TM+ GYA+ G ++A SVF M E N+ + +LSA S +
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRM-----PEKNDVSWNALLSAYVQNSKM-- 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +R + ++ + N ++ +VK + A Q F+ + +D++SW+T+I+G A
Sbjct: 205 -EEACMLFKSRENWAL--VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYA 261
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
+G +A QLF + VF T+ A++S +V++ LF M E+
Sbjct: 262 QSGKIDEARQLFDESPVQDVF----TWTAMVSGYIQNRMVEEARELFDKMPERNEV 313
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 21/210 (10%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P +DV +WT M+ GY + EEA +F +M E NE + +L+ +
Sbjct: 277 PVQDVFTWTAMVSGYIQNRMVEEARELFDKM-----PERNEVSWNAMLAGYVQGERMEMA 331
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ + + R +VS N +I Y +CG + A +F+ + +D +SW+ +I+G +
Sbjct: 332 KELFDVMPCR---NVSTW--NTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQ 386
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G +AL+LF M G + +F + +S C+ ++ G L +V
Sbjct: 387 SGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHG------RLVKGGY 440
Query: 182 HYACVVD-----MYGRAGLLEEAEAFIREM 206
C V MY + G +EEA +EM
Sbjct: 441 ETGCFVGNALLLMYCKCGSIEEANDLFKEM 470
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 114/267 (42%), Gaps = 49/267 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W I Y G C EA+ VF+ M + N ++S + +
Sbjct: 63 DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYN-----GMISGYLRNGEFELARKL 117
Query: 65 HSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+ R +LV N +I YV+ ++G A ++F ++ +D+ SW+T++SG A NG
Sbjct: 118 FDEMPER------DLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNG 171
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----------- 172
C A +F M +DV++ AL+SA +++ +LFK+
Sbjct: 172 CVDDARSVFDRMPEK----NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLG 227
Query: 173 ----VYEIVPQTQHY-----------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217
+IV Q + ++ Y ++G ++EA E P++ ++ W A
Sbjct: 228 GFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT-WTA 286
Query: 218 LLNACRIHR----NDEMFD--PIRQEL 238
+++ +R E+FD P R E+
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPERNEV 313
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 236 bits (602), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 190/291 (65%), Gaps = 4/291 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+ VSWT +I GYA+ G EA+ VFQ M + EP+E TL+ VLSAC+ + +L G+
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRM-LMENVEPDEVTLLAVLSACADLGSLELGER 271
Query: 64 VHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+ SY+ R + +VS + NAVI+MY K G++ A+ VF + +++++W+T+I+GLA +
Sbjct: 272 ICSYVDHRGMNRAVS--LNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATH 329
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G G +AL +F+ M+ GV P+DVTFIA++SACSH G VD G LF +M + Y I P +H
Sbjct: 330 GHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEH 389
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C++D+ GRAG L EA+ I+ MP +A ++WG+LL A +H + E+ + EL+ +
Sbjct: 390 YGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLE 449
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G + L++N ++ RW+++ +R+ ++ +G+KK G S IEV ++
Sbjct: 450 PNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVY 500
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 47/201 (23%)
Query: 38 AEPNEATLVNVLSACSSISALSFGQYVHSYIST-RYDLSVSNLVGNAVINMYVKCGDVGI 96
A+P+ T VL +S + FG+ +H + +D SV + G +I MY CG +G
Sbjct: 112 AKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTG--LIQMYFSCGGLGD 169
Query: 97 AIQVFNMLAYKDM---------------------------------ISWSTVISGLAMNG 123
A ++F+ + KD+ +SW+ VISG A +G
Sbjct: 170 ARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSG 229
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTVYEIVP 178
+A+++F M++ V PD+VT +A++SAC+ G ++ G + + M+ +
Sbjct: 230 RASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSL-- 287
Query: 179 QTQHYACVVDMYGRAGLLEEA 199
V+DMY ++G + +A
Sbjct: 288 ----NNAVIDMYAKSGNITKA 304
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+R+VV+WTT+I G A G EA+++F M K PN+ T + +LSACS + + G+
Sbjct: 313 ERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAG-VRPNDVTFIAILSACSHVGWVDLGK 371
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
+ + + ++Y + + +I++ + G + A +V + +K
Sbjct: 372 RLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK 416
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 183/289 (63%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+VV+WT +I GY + ++ + VF+EM K+ A PNE TL +VLSAC+ + AL
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVA-PNEKTLSSVLSACAHVGALHR 324
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + + ++ G +I++YVKCG + AI VF L K++ +W+ +I+G A
Sbjct: 325 GRRVHCYM-IKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFA 383
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G R A LF M+ + V P++VTF+A++SAC+HGGLV++G LF +M + + P+
Sbjct: 384 AHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKA 443
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HYAC+VD++GR GLLEEA+A I MP+E VWGAL +C +H++ E+ ++
Sbjct: 444 DHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIK 503
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ G + L++N ++ + W++ ++R +++ + K G SWIEV
Sbjct: 504 LQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVK 552
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 3/222 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DVV+WT MI G+ G EA+ F EM+KT A NE T+V+VL A + + FG+
Sbjct: 167 KDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVA-ANEMTVVSVLKAAGKVEDVRFGRS 225
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH + +G+++++MY KC A +VF+ + +++++W+ +I+G +
Sbjct: 226 VHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSR 285
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
C + + +F M+ + V P++ T +++SAC+H G + +G + M I T
Sbjct: 286 CFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYM-IKNSIEINTTAG 344
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++D+Y + G LEEA + E E W A++N H
Sbjct: 345 TTLIDLYVKCGCLEEA-ILVFERLHEKNVYTWTAMINGFAAH 385
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +L A + + Q+ H++I ++ L V N++I+ Y G A +
Sbjct: 102 PSRHTFPPLLKAVFKLRDSNPFQF-HAHI-VKFGLDSDPFVRNSLISGYSSSGLFDFASR 159
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ KD+++W+ +I G NG +A+ F M GV +++T ++++ A
Sbjct: 160 LFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVED 219
Query: 160 VDQGLILFKAMSTVYEIVPQTQHYAC-------VVDMYGRAGLLEEAEAFIREMPIEAEW 212
V G +V+ + +T C +VDMYG+ ++A+ EMP
Sbjct: 220 VRFG-------RSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMP-SRNV 271
Query: 213 SVWGALL 219
W AL+
Sbjct: 272 VTWTALI 278
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/292 (39%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R++ +W+ MI GYA+ E+A+ +F+ M K + NE +V+V+S+C+ + AL F
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM-KREGVVANETVMVSVISSCAHLGALEF 267
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ + Y+ + ++V+ ++G A+++M+ +CGD+ AI VF L D +SWS++I GLA
Sbjct: 268 GERAYEYV-VKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G +A+ FS MI G P DVTF A++SACSHGGLV++GL +++ M + I P+
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRL 386
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDM GRAG L EAE FI +M ++ + GALL AC+I++N E+ + + L+
Sbjct: 387 EHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK 446
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
K G + L+SN +A A +W+ +RD ++ +KK G S IE++ I
Sbjct: 447 VKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKI 498
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 47/239 (19%)
Query: 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83
+A + +M K++ P+ T ++ A S + + G+ HS I R+ V N+
Sbjct: 100 KAFGFYTQMLKSR-IWPDNITFPFLIKASSEMECVLVGEQTHSQI-VRFGFQNDVYVENS 157
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISW------------------------------- 112
+++MY CG + A ++F + ++D++SW
Sbjct: 158 LVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTW 217
Query: 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172
S +I+G A N C +A+ LF M GV ++ +++IS+C+H G ++ G
Sbjct: 218 SIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG-------ER 270
Query: 173 VYEIVPQTQHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
YE V ++ +VDM+ R G +E+A +P E + W +++ +H
Sbjct: 271 AYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLP-ETDSLSWSSIIKGLAVH 328
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 103/242 (42%), Gaps = 26/242 (10%)
Query: 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV-------KCGDVGIAIQV 100
+L +CSS S L + +H ++ R L V + ++ + V +G A +
Sbjct: 18 LLQSCSSFSDL---KIIHGFL-LRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGI 73
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160
F+ + ++ ++ +I + +A ++ M+ + ++PD++TF LI A S V
Sbjct: 74 FSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECV 133
Query: 161 DQGLILFKAMSTVYEIVPQTQHYA--CVVDMYGRAGLLEEAEAFIREMPIE--AEWSVWG 216
L+ + S + Q Y +V MY G + A +M W+
Sbjct: 134 ---LVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMV 190
Query: 217 ALLNACRIHRN-DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275
A C + N EMFD + ++ T+++M N +A + +E A + + ++R
Sbjct: 191 AGYCKCGMVENAREMFDEMPHR-------NLFTWSIMINGYAKNNCFEKAIDLFEFMKRE 243
Query: 276 GL 277
G+
Sbjct: 244 GV 245
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 175/288 (60%), Gaps = 2/288 (0%)
Query: 2 PK-RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
PK RDVV+WT MIGGY++ G +A+ + EM E+ + PN T+ L AC+S++AL
Sbjct: 435 PKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALR 494
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H+Y +V V N +I+MY KCG + A VF+ + K+ ++W+++++G
Sbjct: 495 IGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGY 554
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
M+G G +AL +F M G D VT + ++ ACSH G++DQG+ F M TV+ + P
Sbjct: 555 GMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPG 614
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRAG L A I EMP+E VW A L+ CRIH E+ + +++
Sbjct: 615 PEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 674
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
G++ L+SN +A A RW+D +IR +R G+KK+ GCSW+E
Sbjct: 675 ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVE 722
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 32/266 (12%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DVV+W+ I GYA+RG EA+ V ++M + +PNE TL++VLS C+S+ AL G+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSG-IKPNEVTLISVLSGCASVGALMHGK 385
Query: 63 YVHSYISTRYDLSV-------SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWS 113
+H Y + +Y + + N+V N +I+MY KC V A +F+ L+ K D+++W+
Sbjct: 386 EIHCY-AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444
Query: 114 TVISGLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
+I G + +G +AL+L S M P+ T + AC+ L +
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA-------SLAALRIGK 497
Query: 172 TVYEIVPQTQHYA-------CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 224
++ + Q A C++DMY + G + +A M + E + W +L+ +
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVT-WTSLMTGYGM 556
Query: 225 HRNDE----MFDPIRQELVNKKGVSV 246
H E +FD +R+ GV++
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTL 582
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 130/300 (43%), Gaps = 53/300 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DVVSW ++I YA+ G + A+ +F M P+ TLVNVL C+S+ S G+ +
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------------- 111
H + T ++ + VGN +++MY KCG + A VF+ ++ KD++S
Sbjct: 252 HCFAVTS-EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310
Query: 112 ----------------------WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
WS ISG A G G +AL + M+ +G+ P++VT I+
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA-------CVVDMYGRAGLLEEAEAF 202
++S C+ G + G + + Y I + + ++DMY + ++ A A
Sbjct: 371 VLSGCASVGALMHGKEI-HCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAM 429
Query: 203 IREM-PIEAEWSVWGALLNACRIHRN--------DEMFDPIRQELVNKKGVSVGTFALMS 253
+ P E + W ++ H + EMF+ Q N +S A S
Sbjct: 430 FDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACAS 489
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 7/221 (3%)
Query: 2 PKRD--VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS 59
P D V W ++I Y + G + + +F M P+ T V AC IS++
Sbjct: 86 PPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT-PDNYTFPFVFKACGEISSVR 144
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ H+ +S + VGNA++ MY +C + A +VF+ ++ D++SW+++I
Sbjct: 145 CGESAHA-LSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESY 203
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
A G + AL++FS M G PD++T + ++ C+ G G L + E++
Sbjct: 204 AKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL-HCFAVTSEMIQ 262
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
C+VDMY + G+++EA M ++ S W A++
Sbjct: 263 NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVS-WNAMV 302
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++ V+WT+++ GY G+ EEA+ +F EM + + + TL+ VL ACS +
Sbjct: 539 MMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG-FKLDGVTLLVVLYACSHSGMIDQ 597
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
G + + T + +S ++++ + G + A+++ M + W +S
Sbjct: 598 GMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCC 657
Query: 120 AMNG 123
++G
Sbjct: 658 RIHG 661
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 234 bits (597), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 189/294 (64%), Gaps = 2/294 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALS 59
MP R+VVSW+ MI YA+ G EA+ F+EM +TK++ PN T+V+VL AC+S++AL
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H YI R S+ ++ +A++ MY +CG + + +VF+ + +D++SW+++IS
Sbjct: 303 QGKLIHGYILRRGLDSILPVI-SALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSY 361
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G G++A+Q+F M+ NG P VTF++++ ACSH GLV++G LF+ M + I PQ
Sbjct: 362 GVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQ 421
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYAC+VD+ GRA L+EA +++M E VWG+LL +CRIH N E+ + + L
Sbjct: 422 IEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF 481
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + G + L+++ +A A W++ +++ + GL+K G W+EV ++
Sbjct: 482 ALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMY 535
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 20/234 (8%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC----SSISAL 58
KR + W + G EE + ++ +M + E + T VL AC +++ L
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTVNHL 198
Query: 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118
G+ +H+++ TR S + +++MY + G V A VF + ++++SWS +I+
Sbjct: 199 MKGKEIHAHL-TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIAC 257
Query: 119 LAMNGCGRQALQLFSLMI--INGVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMS 171
A NG +AL+ F M+ P+ VT ++++ AC+ ++Q G IL + +
Sbjct: 258 YAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLD 317
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
++ ++ + +V MYGR G LE + M + + W +L+++ +H
Sbjct: 318 SILPVI------SALVTMYGRCGKLEVGQRVFDRMH-DRDVVSWNSLISSYGVH 364
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 12/232 (5%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
+S +I + G ++A+ V ++E+ P++ T ++ C S+LS VH
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVL-----SQESSPSQQTYELLILCCGHRSSLSDALRVHR 101
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+I + +I MY G V A +VF+ + + W+ + L + G G
Sbjct: 102 HILDNGS-DQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGE 160
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH---Y 183
+ L L+ M GV D T+ ++ AC L+ K + + H
Sbjct: 161 EVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM 220
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+VDMY R G ++ A MP+ S W A++ AC +N + F+ +R
Sbjct: 221 TTLVDMYARFGCVDYASYVFGGMPVRNVVS-WSAMI-AC-YAKNGKAFEALR 269
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 234 bits (596), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 188/289 (65%), Gaps = 2/289 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+VVSWT++I G A+ G EA+ +F+EM+ +PN T+ ++L AC +I+AL G+
Sbjct: 352 NVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGVKPNHVTIPSMLPACGNIAALGHGRST 410
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H + + R L + VG+A+I+MY KCG + ++ VFNM+ K+++ W+++++G +M+G
Sbjct: 411 HGF-AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGK 469
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++ + +F ++ + PD ++F +L+SAC GL D+G FK MS Y I P+ +HY+
Sbjct: 470 AKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYS 529
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V++ GRAG L+EA I+EMP E + VWGALLN+CR+ N ++ + ++L + +
Sbjct: 530 CMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE 589
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ GT+ L+SN +A W + + IR+++ +GLKK GCSWI+V ++
Sbjct: 590 NPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 117/256 (45%), Gaps = 39/256 (15%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++VSW ++ G+ G+ +EAV +FQ++ P++ T+ +VL + L+ G+ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFC-PDQVTVSSVLPSVGDSEMLNMGRLI 274
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML---------AY--------- 106
H Y+ + L V +A+I+MY K G V I +FN AY
Sbjct: 275 HGYV-IKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGL 333
Query: 107 -----------------KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+++SW+++I+G A NG +AL+LF M + GV P+ VT +
Sbjct: 334 VDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPS 393
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC + + G V+ ++ + ++DMY + G + ++ MP +
Sbjct: 394 MLPACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 210 AEWSVWGALLNACRIH 225
W +L+N +H
Sbjct: 453 -NLVCWNSLMNGFSMH 467
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P + S++++I + +++ VF M + P+ L N+ C+ +SA
Sbjct: 76 IPDPTIYSFSSLIYALTKAKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFKVCAELSAFKV 134
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +S L + V ++ +MY++CG +G A +VF+ ++ KD+++ S ++ A
Sbjct: 135 GKQIHC-VSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYA 193
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
GC + +++ S M +G+ + V++ ++S + G + +++F+ +
Sbjct: 194 RKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +++V W +++ G++ G +E +S+F+ + +T+ +P+ + ++LSAC +
Sbjct: 449 MPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR-LKPDFISFTSLLSACGQVGLTDE 507
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGL 119
G +S Y + + ++N+ + G + A + + ++ D W G
Sbjct: 508 GWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVW-----GA 562
Query: 120 AMNGCGRQ 127
+N C Q
Sbjct: 563 LLNSCRLQ 570
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 233 bits (595), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 186/288 (64%), Gaps = 2/288 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ +SWTTMI GY + +EA+ +F EM+ + + EP+ +L N LSAC+ + AL
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS-DVEPDNVSLANALSACAQLGALEQ 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++HSY++ + + + +++G +I+MY KCG++ A++VF + K + +W+ +ISG A
Sbjct: 266 GKWIHSYLN-KTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G GR+A+ F M G+ P+ +TF A+++ACS+ GLV++G ++F +M Y + P
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAGLL+EA+ FI+EMP++ +WGALL ACRIH+N E+ + I + L+
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIA 444
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + +N A +W+ A + R ++ G+ K GCS I +
Sbjct: 445 IDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISL 492
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 123/257 (47%), Gaps = 41/257 (15%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ D W MI G++ E ++ ++Q M A N T ++L ACS++SA
Sbjct: 77 RPDTFLWNLMIRGFSCSDEPERSLLLYQRM-LCSSAPHNAYTFPSLLKACSNLSAFEETT 135
Query: 63 YVHSYISTR-YD---LSVSNLVG--------------------------NAVINMYVKCG 92
+H+ I+ Y+ +V++L+ N+VI YVK G
Sbjct: 136 QIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAG 195
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152
+ IA+ +F +A K+ ISW+T+ISG ++ALQLF M + V PD+V+ +S
Sbjct: 196 KMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALS 255
Query: 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV-VDMYGRAGLLEEA-EAF--IREMPI 208
AC+ G ++QG + ++ + CV +DMY + G +EEA E F I++ +
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTR--IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 313
Query: 209 EAEWSVWGALLNACRIH 225
+A W AL++ H
Sbjct: 314 QA----WTALISGYAYH 326
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 187/290 (64%), Gaps = 2/290 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DV+SW T+IGGY +EA+ +FQEM ++ E PN+ T++++L AC+ + A+
Sbjct: 327 LPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDI 385
Query: 61 GQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H YI R ++ ++ + ++I+MY KCGD+ A QVFN + +K + SW+ +I G
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
AM+G + LFS M G+ PDD+TF+ L+SACSH G++D G +F+ M+ Y++ P+
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPK 505
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY C++D+ G +GL +EAE I M +E + +W +LL AC++H N E+ + + L+
Sbjct: 506 LEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLI 565
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G++ L+SN +A A RW + K R + G+KK GCS IE++
Sbjct: 566 KIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Score = 141 bits (356), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 132/234 (56%), Gaps = 5/234 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P +DVVSW MI GYAE G +EA+ +F++M KT P+E+T+V V+SAC+ ++
Sbjct: 226 IPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-VRPDESTMVTVVSACAQSGSIEL 284
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH +I S +V NA+I++Y KCG++ A +F L YKD+ISW+T+I G
Sbjct: 285 GRQVHLWIDDHGFGSNLKIV-NALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++AL LF M+ +G P+DVT ++++ AC+H G +D G + + + V
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNA 403
Query: 181 QHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFD 232
++DMY + G +E A + + S W A++ +H R D FD
Sbjct: 404 SSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMHGRADASFD 456
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+++ W TM G+A A+ ++ M + PN T VL +C+ A GQ +
Sbjct: 98 NLLIWNTMFRGHALSSDPVSALKLYVCM-ISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--------------------- 103
H ++ + + V ++I+MYV+ G + A +VF+
Sbjct: 157 HGHV-LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 104 ----------LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ KD++SW+ +ISG A G ++AL+LF M+ V PD+ T + ++SA
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 154 CSHGGLVDQGLILF-----KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
C+ G ++ G + + +IV ++D+Y + G LE A +P
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIV------NALIDLYSKCGELETACGLFERLPY 329
Query: 209 EAEWSVWGALL 219
+ S W L+
Sbjct: 330 KDVIS-WNTLI 339
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 192/292 (65%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD ++W MI GYA+ G EA++VF M+ + + N +++VLSAC+ + AL
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQ-LEGVKVNGVAMISVLSACTQLGALDQ 258
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ HSYI R + ++ + ++++Y KCGD+ A++VF + K++ +WS+ ++GLA
Sbjct: 259 GRWAHSYIE-RNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLA 317
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
MNG G + L+LFSLM +GV P+ VTF++++ CS G VD+G F +M + I PQ
Sbjct: 318 MNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQL 377
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+Y RAG LE+A + I++MP++ +VW +LL+A R+++N E+ ++++
Sbjct: 378 EHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLE 437
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + L+SN +A ++ W++ + +R ++ G++K+ GCS +EVN +
Sbjct: 438 LETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEV 489
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142
A++ +CGDV A ++F + +D I+W+ +ISG A G R+AL +F LM + GV
Sbjct: 179 AMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKV 238
Query: 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202
+ V I+++SAC+ G +DQG + +I + +VD+Y + G +E+A
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIER-NKIKITVRLATTLVDLYAKCGDMEKAMEV 297
Query: 203 IREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVS 245
M E W + LN ++ + E+F ++Q+ V V+
Sbjct: 298 FWGME-EKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 231 bits (590), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 178/294 (60%), Gaps = 8/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW +I GY + G EEA+S+F + K + P + N+L AC+ ++ L
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLL-KRESVCPTHYSFANILKACADLAELHL 404
Query: 61 GQYVHSYISTRYDLSVSN------LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWST 114
G H ++ ++ + VGN++I+MYVKCG V VF + +D +SW+
Sbjct: 405 GMQAHVHV-LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNA 463
Query: 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
+I G A NG G +AL+LF M+ +G PD +T I ++SAC H G V++G F +M+ +
Sbjct: 464 MIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDF 523
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
+ P HY C+VD+ GRAG LEEA++ I EMP++ + +WG+LL AC++HRN + +
Sbjct: 524 GVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYV 583
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
++L+ + + G + L+SN +A +WED +R +R+ G+ K+ GCSWI++
Sbjct: 584 AEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKI 637
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 2/208 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +W +M+ G+A+ CEEA+ F M K NE + +VLSACS ++ ++
Sbjct: 112 MPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFV-LNEYSFASVLSACSGLNDMNK 170
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VHS I+ LS +G+A+++MY KCG+V A +VF+ + ++++SW+++I+
Sbjct: 171 GVQVHSLIAKSPFLS-DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFE 229
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG +AL +F +M+ + V PD+VT ++ISAC+ + G + + ++
Sbjct: 230 QNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDI 289
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPI 208
VDMY + ++EA MPI
Sbjct: 290 ILSNAFVDMYAKCSRIKEARFIFDSMPI 317
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 124/258 (48%), Gaps = 44/258 (17%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R+VVSW ++I + + G EA+ VFQ M +++ EP+E TL +V+SAC+S+SA+
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESR-VEPDEVTLASVISACASLSAIKV 271
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-----------------------GIA 97
GQ VH + L ++ NA ++MY KC + G A
Sbjct: 272 GQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYA 331
Query: 98 IQ--------VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+ +F +A ++++SW+ +I+G NG +AL LF L+ V P +F
Sbjct: 332 MAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFAN 391
Query: 150 LISACS-----HGGLVDQGLIL---FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
++ AC+ H G+ +L FK S + + ++DMY + G +EE
Sbjct: 392 ILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGN---SLIDMYVKCGCVEEGYL 448
Query: 202 FIREMPIEAEWSVWGALL 219
R+M +E + W A++
Sbjct: 449 VFRKM-MERDCVSWNAMI 465
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N+V+ K G + A +F + +D +W++++SG A + +AL F++M G
Sbjct: 90 NSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFV 149
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV------VDMYGRAGL 195
++ +F +++SACS +++G+ V+ ++ ++ + V VDMY + G
Sbjct: 150 LNEYSFASVLSACSGLNDMNKGV-------QVHSLIAKSPFLSDVYIGSALVDMYSKCGN 202
Query: 196 LEEAEAFIREM 206
+ +A+ EM
Sbjct: 203 VNDAQRVFDEM 213
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 230 bits (586), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R VVSW TMI GY+ GF ++AV VF+EM+K + PN TLV+VL A S + +L
Sbjct: 234 MRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG-DIRPNYVTLVSVLPAISRLGSLEL 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y + + + +++G+A+I+MY KCG + AI VF L +++I+WS +I+G A
Sbjct: 293 GEWLHLY-AEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFA 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G A+ F M GV P DV +I L++ACSHGGLV++G F M +V + P+
Sbjct: 352 IHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRI 411
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GR+GLL+EAE FI MPI+ + +W ALL ACR+ N EM + L++
Sbjct: 412 EHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + +SN +A W + +++R ++ ++K GCS I+++
Sbjct: 472 MVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDID 520
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 128/274 (46%), Gaps = 54/274 (19%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEE--AVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58
MP+R+ SW T+I G++E + A+++F EM + EPN T +VL AC+ +
Sbjct: 85 MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144
Query: 59 SFGQYVHSYISTRY-----DLSVSNLVG-------------------------------- 81
G+ +H ++ +Y + +SNLV
Sbjct: 145 QEGKQIHG-LALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRK 203
Query: 82 --------NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
N +I+ Y++ GD A +F+ + + ++SW+T+ISG ++NG + A+++F
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 134 LMIINGVFPDDVTFIALISACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYACVVDMYG 191
M + P+ VT ++++ A S G ++ G L L+ S I + ++DMY
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG---IRIDDVLGSALIDMYS 320
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ G++E+A +P E + W A++N IH
Sbjct: 321 KCGIIEKAIHVFERLPRENVIT-WSAMINGFAIH 353
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 33/222 (14%)
Query: 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ--ALQLFSLMIING-VFPDDVTFIA 149
D+ A ++FN + ++ SW+T+I G + + + A+ LF M+ + V P+ TF +
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
++ AC+ G + +G + ++ Y + +V MY G +++A + IE
Sbjct: 134 VLKACAKTGKIQEGKQI-HGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIE 192
Query: 210 AEWSV-------------WGALLNA------CRIHRNDEMFDPIRQELVNKKGVSVGTFA 250
+ V W +++ C+ R +FD +RQ V + ++
Sbjct: 193 KDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAAR--MLFDKMRQRSVVSWNTMISGYS 250
Query: 251 LMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
L N F ++DA ++ E+++ G + + + V P+I
Sbjct: 251 L--NGF-----FKDAVEVFREMKK-GDIRPNYVTLVSVLPAI 284
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 181/295 (61%), Gaps = 5/295 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD VSW+TMI G A G E+ F+E+++ + PNE +L VLSACS + F
Sbjct: 229 MPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEF 287
Query: 61 GQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD-MISWSTVISG 118
G+ +H ++ Y VS V NA+I+MY +CG+V +A VF + K ++SW+++I+G
Sbjct: 288 GKILHGFVEKAGYSWIVS--VNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAG 345
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LAM+G G +A++LF+ M GV PD ++FI+L+ ACSH GL+++G F M VY I P
Sbjct: 346 LAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEP 405
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+VD+YGR+G L++A FI +MPI VW LL AC H N E+ + ++Q L
Sbjct: 406 EIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 465
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ G L+SN +A A +W+D IR + +KK T S +EV +++
Sbjct: 466 NELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMY 520
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 17/241 (7%)
Query: 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIS 69
TT+IG Y G E A VF EM +PN V++AC + ++ + + +
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMH-----QPNLVAWNAVITACFRGNDVAGAREIFDKML 199
Query: 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129
R S N ++ Y+K G++ A ++F+ + ++D +SWST+I G+A NG ++
Sbjct: 200 VRNHTS-----WNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESF 254
Query: 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIVPQTQHYACVVD 188
F + G+ P++V+ ++SACS G + G IL + Y + + ++D
Sbjct: 255 LYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNN--ALID 312
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKKGV 244
MY R G + A M + W +++ +H E +F+ + V G+
Sbjct: 313 MYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGI 372
Query: 245 S 245
S
Sbjct: 373 S 373
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 28/197 (14%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+ D + T++ GY+E +V+VF EM + P+ + V+ A + +L
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + ++ L VG +I MY CG V A +VF+ + ++++W+ VI+
Sbjct: 125 GFQMHCQ-ALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACF 183
Query: 121 MNGCGRQALQLFSLMIING----------------------VFP-----DDVTFIALISA 153
A ++F M++ +F DDV++ +I
Sbjct: 184 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243
Query: 154 CSHGGLVDQGLILFKAM 170
+H G ++ + F+ +
Sbjct: 244 IAHNGSFNESFLYFREL 260
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/292 (40%), Positives = 174/292 (59%), Gaps = 1/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P DV+SW T+I GYA+ GF EA+ ++ ME+ E N+ T V+VL ACS AL
Sbjct: 410 LPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQ 469
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H + + L + V ++ +MY KCG + A+ +F + + + W+T+I+
Sbjct: 470 GMKLHGRL-LKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHG 528
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G +A+ LF M+ GV PD +TF+ L+SACSH GLVD+G F+ M T Y I P
Sbjct: 529 FHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSL 588
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VDMYGRAG LE A FI+ M ++ + S+WGALL+ACR+H N ++ + L
Sbjct: 589 KHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFE 648
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ VG L+SN +A A +WE ++IR GL+K G S +EV+ +
Sbjct: 649 VEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKV 700
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 127/244 (52%), Gaps = 8/244 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD++SW ++I Y A+S+FQEM ++ +P+ TL+++ S S + +
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSR-IQPDCLTLISLASILSQLGDIRA 366
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ V + + +GNAV+ MY K G V A VFN L D+ISW+T+ISG A
Sbjct: 367 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYA 426
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAM--STVYEIV 177
NG +A++++++M G + + T+++++ ACS G + QG+ L + + +Y V
Sbjct: 427 QNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV 486
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQE 237
A DMYG+ G LE+A + ++P W L+ H + E + +E
Sbjct: 487 FVVTSLA---DMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKE 542
Query: 238 LVNK 241
++++
Sbjct: 543 MLDE 546
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 16/212 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD+ SW MI GY + G +EA+++ + + T+V++LSAC+ +
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-----DSVTVVSLLSACTEAGDFNR 265
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HSY S ++ L V N +I++Y + G + +VF+ + +D+ISW+++I
Sbjct: 266 GVTIHSY-SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
+N +A+ LF M ++ + PD +T I+L S S G + QG L K
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGW----- 379
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
+ VV MY + GL++ A A +P
Sbjct: 380 FLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 411
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 12/222 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDV +W MI GY G E + F + P+ T +VL AC ++
Sbjct: 112 IQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID--- 168
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ ++ V ++I++Y + VG A +F+ + +DM SW+ +ISG
Sbjct: 169 GNKIHC-LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227
Query: 121 MNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G ++AL L NG+ D VT ++L+SAC+ G ++G+ + + S + + +
Sbjct: 228 QSGNAKEALTL-----SNGLRAMDSVTVVSLLSACTEAGDFNRGVTI-HSYSIKHGLESE 281
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D+Y G L + + M + S W +++ A
Sbjct: 282 LFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS-WNSIIKA 322
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 12/142 (8%)
Query: 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSL-MIINGVFP 142
++N+Y G+V +A F+ + +D+ +W+ +ISG G + ++ FSL M+ +G+ P
Sbjct: 92 LVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTP 151
Query: 143 DDVTFIALISACS---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEA 199
D TF +++ AC G + + F M VY A ++ +Y R + A
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVA-------ASLIHLYSRYKAVGNA 204
Query: 200 EAFIREMPIEAEWSVWGALLNA 221
EMP+ + W A+++
Sbjct: 205 RILFDEMPVR-DMGSWNAMISG 225
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/289 (38%), Positives = 182/289 (62%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP RD +SWT MI GY G E++ +F+EM+ P+E T+V+VL+AC+ + +L
Sbjct: 328 MPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-PDEFTMVSVLTACAHLGSLEI 386
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ +YI + + +VGNA+I+MY KCG A +VF+ + +D +W+ ++ GLA
Sbjct: 387 GEWIKTYID-KNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G++A+++F M + PDD+T++ ++SAC+H G+VDQ F M + + I P
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
HY C+VDM GRAGL++EA +R+MP+ VWGALL A R+H ++ M + ++++
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILE 565
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + +AL+ N +AG RW+D ++R +I + +KK G S IEVN
Sbjct: 566 LEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 35/248 (14%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K DV SW MI GY EE++ + EME+ P TL+ VLSACS + +
Sbjct: 198 KEDVFSWNLMISGYNRMKEYEESIELLVEMERNL-VSPTSVTLLLVLSACSKVKDKDLCK 256
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--------------------- 101
VH Y+S S + NA++N Y CG++ IA+++F
Sbjct: 257 RVHEYVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVER 315
Query: 102 ----------NMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
+ + +D ISW+ +I G GC ++L++F M G+ PD+ T ++++
Sbjct: 316 GNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL 375
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAE 211
+AC+H G ++ G + K +I ++DMY + G E+A+ +M +
Sbjct: 376 TACAHLGSLEIGEWI-KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDK 434
Query: 212 WSVWGALL 219
++ W A++
Sbjct: 435 FT-WTAMV 441
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 16/213 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALS 59
+P+ DVV W MI G+++ E V ++ M K + P+ T +L+ AL+
Sbjct: 94 IPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLK-EGVTPDSHTFPFLLNGLKRDGGALA 152
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ +H ++ ++ L + V NA++ MY CG + +A VF+ +D+ SW+ +ISG
Sbjct: 153 CGKKLHCHV-VKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGY 211
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV-- 177
++++L M N V P VT + ++SACS + D+ L V+E V
Sbjct: 212 NRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSK--VKDKDLC-----KRVHEYVSE 264
Query: 178 ----PQTQHYACVVDMYGRAGLLEEAEAFIREM 206
P + +V+ Y G ++ A R M
Sbjct: 265 CKTEPSLRLENALVNAYAACGEMDIAVRIFRSM 297
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A ++F + D++ W+ +I G + C + ++L+ M+ GV PD TF L+
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 152 SACSHGG 158
+ G
Sbjct: 142 NGLKRDG 148
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 228 bits (580), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 184/294 (62%), Gaps = 7/294 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE----PNEATLVNVLSACSSIS 56
MP+R+V+SW+ +I GY G +EA+ +F+EM+ K E PNE T+ VLSAC +
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTV 115
AL G++VH+YI +Y + + ++G A+I+MY KCG + A +VFN L + KD+ ++S +
Sbjct: 214 ALEQGKWVHAYID-KYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAM 272
Query: 116 ISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174
I LAM G + QLFS M + + P+ VTF+ ++ AC H GL+++G FK M +
Sbjct: 273 ICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEF 332
Query: 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234
I P QHY C+VD+YGR+GL++EAE+FI MP+E + +WG+LL+ R+ + + +
Sbjct: 333 GITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGA 392
Query: 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+ ++ G + L+SN +A RW + IR E+ G+ K GCS++EV
Sbjct: 393 LKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEV 446
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMII---N 138
N+V+N Y K G + A ++F+ + +++ISWS +I+G M G ++AL LF M + N
Sbjct: 132 NSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 191
Query: 139 GVF--PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196
F P++ T ++SAC G ++QG + A Y + ++DMY + G L
Sbjct: 192 EAFVRPNEFTMSTVLSACGRLGALEQGKWV-HAYIDKYHVEIDIVLGTALIDMYAKCGSL 250
Query: 197 EEAEAFIREMPIEAEWSVWGALL 219
E A+ + + + + A++
Sbjct: 251 ERAKRVFNALGSKKDVKAYSAMI 273
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 227 bits (578), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 176/294 (59%), Gaps = 4/294 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P++ + SW MI GY + G E+A+S+F+EM+K+ E PN T+ +LSAC+ + ALS G
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKS-EFSPNPVTITCILSACAQLGALSLG 439
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
++VH + + D S V A+I MY KCG + A ++F+++ K+ ++W+T+ISG +
Sbjct: 440 KWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGL 498
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
+G G++AL +F M+ +G+ P VTF+ ++ ACSH GLV +G +F +M Y P +
Sbjct: 499 HGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVK 558
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241
HYAC+VD+ GRAG L+ A FI M IE SVW LL ACRIH++ + + ++L
Sbjct: 559 HYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618
Query: 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV--NPSIF 293
+VG L+SN + + A +R ++ L K G + IE+ P +F
Sbjct: 619 DPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVF 672
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D + W TMI GY + E++ VF+++ + TL+++L A + + L
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS ++T+ + V I++Y KCG + + +F D+++++ +I G
Sbjct: 240 GMQIHS-LATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYT 298
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD--QGLIL----------FK 168
NG +L LF ++++G T ++L+ H L+ G L
Sbjct: 299 SNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVST 358
Query: 169 AMSTVYEIVPQTQ---------------HYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
A++TVY + + + + ++ Y + GL E+A + REM ++E+S
Sbjct: 359 ALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-KSEFS 417
Query: 214 ----VWGALLNAC 222
+L+AC
Sbjct: 418 PNPVTITCILSAC 430
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 19/244 (7%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K D+V++ MI GY G E ++S+F+E+ + A +TLV+++ + +
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG-ARLRSSTLVSLVPVSGHLMLI---Y 339
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y LS ++ V A+ +Y K ++ A ++F+ K + SW+ +ISG N
Sbjct: 340 AIHGYCLKSNFLSHAS-VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQN 398
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A+ LF M + P+ VT ++SAC+ G + G V+++V T
Sbjct: 399 GLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-------KWVHDLVRSTDF 451
Query: 183 YACV------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+ + + MY + G + EA M + E + W +++ +H + I
Sbjct: 452 ESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT-WNTMISGYGLHGQGQEALNIFY 510
Query: 237 ELVN 240
E++N
Sbjct: 511 EMLN 514
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 5/205 (2%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
+ DV + ++ G++ ++SVF + K+ + +PN +T +SA S G+
Sbjct: 80 RPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGR 139
Query: 63 YVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+H + D + L+G+ ++ MY K V A +VF+ + KD I W+T+ISG
Sbjct: 140 VIHGQAVVDGCDSEL--LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 122 NGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +++Q+F +I D T + ++ A + + G+ + +++T
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI-HSLATKTGCYSHD 256
Query: 181 QHYACVVDMYGRAGLLEEAEAFIRE 205
+ +Y + G ++ A RE
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFRE 281
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 12/157 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K++ V+W TMI GY G +EA+++F EM + P T + VL ACS +
Sbjct: 481 MTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSG-ITPTPVTFLCVLYACSHAGLVKE 539
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + + + RY S ++++ + G + A+Q ++ + S W T++
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 120 AMNGCGRQAL----QLFSLMIINGVFPDDVTFIALIS 152
++ A +LF L PD+V + L+S
Sbjct: 600 RIHKDTNLARTVSEKLFELD------PDNVGYHVLLS 630
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 227 bits (578), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 179/288 (62%), Gaps = 4/288 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D + W ++IGG+A+ + A+ +F+ M++ +ATL +VL AC+ ++ L G
Sbjct: 224 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQA 282
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H +I +YD + ++ NA+++MY KCG + A++VFN + +D+I+WST+ISGLA NG
Sbjct: 283 HVHI-VKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGY 339
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
++AL+LF M +G P+ +T + ++ ACSH GL++ G F++M +Y I P +HY
Sbjct: 340 SQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG 399
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C++D+ G+AG L++A + EM E + W LL ACR+ RN + + ++++
Sbjct: 400 CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPE 459
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
GT+ L+SN +A + +W+ +IR +R G+KK+ GCSWIEVN I
Sbjct: 460 DAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQI 507
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 110/224 (49%), Gaps = 15/224 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SWTTMI Y++ ++A+ + M + PN T +VL +C+ +S +
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-DNVRPNVYTYSSVLRSCNGMSDV-- 178
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H I + L V +A+I+++ K G+ A+ VF+ + D I W+++I G A
Sbjct: 179 -RMLHCGI-IKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFA 236
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N AL+LF M G + T +++ AC+ L++ G M IV
Sbjct: 237 QNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG------MQAHVHIVKYD 290
Query: 181 QHYA---CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
Q +VDMY + G LE+A +M E + W +++
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMK-ERDVITWSTMISG 333
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDV++W+TMI G A+ G+ +EA+ +F+ M K+ +PN T+V VL ACS L
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERM-KSSGTKPNYITIVGVLFACSHAGLLED 377
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFN-MLAYKDMISWSTVI 116
G Y + Y + +I++ K G + A+++ N M D ++W T++
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 434
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQV 100
+ AT ++ C S A+ G + ++ + LV N +INMYVK + A Q+
Sbjct: 60 DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLV-NVLINMYVKFNLLNDAHQL 118
Query: 101 FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155
F+ + +++ISW+T+IS + ++AL+L LM+ + V P+ T+ +++ +C+
Sbjct: 119 FDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV 178
Query: 156 ---HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212
H G++ +GL S V+ + ++D++ + G E+A + EM + +
Sbjct: 179 RMLHCGIIKEGL-----ESDVFV-------RSALIDVFAKLGEPEDALSVFDEM-VTGDA 225
Query: 213 SVWGALL 219
VW +++
Sbjct: 226 IVWNSII 232
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 193/298 (64%), Gaps = 8/298 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++ +V+W +++ G+ + G +EA+ VF +M ++ EP+ AT V++LSAC+ A+S
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG-FEPDSATFVSLLSACAQTGAVSL 226
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G +VH YI S DL+V +G A+IN+Y +CGDVG A +VF+ + ++ +W+ +IS
Sbjct: 227 GSWVHQYIISEGLDLNVK--LGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAY 284
Query: 120 AMNGCGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
+G G+QA++LF+ M + G P++VTF+A++SAC+H GLV++G ++K M+ Y ++P
Sbjct: 285 GTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIP 344
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS---VWGALLNACRIHRNDEMFDPIR 235
+H+ C+VDM GRAG L+EA FI ++ + + +W A+L AC++HRN ++ I
Sbjct: 345 GVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIA 404
Query: 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ L+ + + G ++SN +A + + ++ + IRD + R L+K+ G S IEV +
Sbjct: 405 KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTY 462
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 25/197 (12%)
Query: 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
P+ T +V+ +C+ +SAL G+ VH + + + V A++ Y KCGD+ A Q
Sbjct: 105 PSNYTFTSVIKSCADLSALRIGKGVHCH-AVVSGFGLDTYVQAALVTFYSKCGDMEGARQ 163
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG- 158
VF+ + K +++W++++SG NG +A+Q+F M +G PD TF++L+SAC+ G
Sbjct: 164 VFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGA 223
Query: 159 ----------LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI 208
++ +GL L + T ++++Y R G + +A +M
Sbjct: 224 VSLGSWVHQYIISEGLDLNVKLGTA------------LINLYSRCGDVGKAREVFDKMK- 270
Query: 209 EAEWSVWGALLNACRIH 225
E + W A+++A H
Sbjct: 271 ETNVAAWTAMISAYGTH 287
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 104/286 (36%), Positives = 177/286 (61%), Gaps = 2/286 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD +SW +++ GY + G EA+ +F++M T + +P +V+ AC+ ++ L G+
Sbjct: 306 RDGISWNSLVAGYVQNGRYNEALRLFRQMV-TAKVKPGAVAFSSVIPACAHLATLHLGKQ 364
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H Y+ R + + +A+++MY KCG++ A ++F+ + D +SW+ +I G A++G
Sbjct: 365 LHGYV-LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHG 423
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
G +A+ LF M GV P+ V F+A+++ACSH GLVD+ F +M+ VY + + +HY
Sbjct: 424 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 483
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
A V D+ GRAG LEEA FI +M +E SVW LL++C +H+N E+ + + +++
Sbjct: 484 AAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDS 543
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
++G + LM N +A RW++ K+R +R+ GL+KK CSWIE+
Sbjct: 544 ENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMK 589
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 132/254 (51%), Gaps = 18/254 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++DVVS+ T+I GYA+ G E+A+ + +EM T + +P+ TL +VL S +
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLPIFSEYVDVIK 260
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H Y+ R + +G+++++MY K + + +VF+ L +D ISW+++++G
Sbjct: 261 GKEIHGYV-IRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYV 319
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD-----QGLILFKAMSTVYE 175
NG +AL+LF M+ V P V F ++I AC+H + G +L +
Sbjct: 320 QNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIF 379
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MF 231
I + +VDMY + G ++ A M + E S W A++ +H + +F
Sbjct: 380 IA------SALVDMYSKCGNIKAARKIFDRMNVLDEVS-WTAIIMGHALHGHGHEAVSLF 432
Query: 232 DPIRQELVNKKGVS 245
+ ++++ V V+
Sbjct: 433 EEMKRQGVKPNQVA 446
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 103/236 (43%), Gaps = 49/236 (20%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V++W ++I + ++ +A++ F EM + P+ +VL +C+ + L FG+ VH
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVH 128
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI--------------------------- 98
+I R + GNA++NMY K +G I
Sbjct: 129 GFI-VRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187
Query: 99 ---------QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149
+VF ++ KD++S++T+I+G A +G AL++ M + PD T +
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247
Query: 150 LISACSH-----GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200
++ S G G ++ K + + I + +VDMY ++ +E++E
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYI------GSSLVDMYAKSARIEDSE 297
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 41 NEATLVNVLSACSSISALSFGQYVHS-YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQ 99
++A + ++ + I + S + +H+ +I T+ S+S+ + VI++Y + A+
Sbjct: 4 SKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ---SLSHTSASIVISIYTNLKLLHEALL 60
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
+F L +++W +VI +AL F M +G PD F +++ +C+
Sbjct: 61 LFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCT 116
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 225 bits (573), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+ +VSW MIG Y + EAV ++ ME EP+ ++ +VL AC SALS
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRME-ADGFEPDAVSITSVLPACGDTSALSL 327
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H YI R L + L+ NA+I+MY KCG + A VF + +D++SW+ +IS
Sbjct: 328 GKKIHGYIE-RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYG 386
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G G A+ LFS + +G+ PD + F+ ++ACSH GL+++G FK M+ Y+I P+
Sbjct: 387 FSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRL 446
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+H AC+VD+ GRAG ++EA FI++M +E VWGALL ACR+H + ++ +L
Sbjct: 447 EHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ 506
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
G + L+SN +A A RWE+ IR+ ++ GLKK G S +EVN
Sbjct: 507 LAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVN 555
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R+V+ MI Y GF E V VF M P+ T VL ACS +
Sbjct: 100 IPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVI 158
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H +T+ LS + VGN +++MY KCG + A V + ++ +D++SW++++ G A
Sbjct: 159 GRKIHGS-ATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYA 217
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
N AL++ M + D T +L+ A S+
Sbjct: 218 QNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RDVVSW +++ GYA+ ++A+ V +EME K + + T+ ++L A
Sbjct: 201 MSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISH-DAGTMASLLPA--------- 250
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
VSN V MYVK +F + K ++SW+ +I
Sbjct: 251 ---------------VSNTTTENV--MYVK--------DMFFKMGKKSLVSWNVMIGVYM 285
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N +A++L+S M +G PD V+ +++ AC + G + + +++P
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIER-KKLIPNL 344
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++DMY + G LE+A M S W A+++A
Sbjct: 345 LLENALIDMYAKCGCLEKARDVFENMKSRDVVS-WTAMISA 384
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 115/275 (41%), Gaps = 22/275 (8%)
Query: 19 RGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSV 76
R F VS + + P E + VL I L + VHS I DL
Sbjct: 17 RKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILE-DLRC 72
Query: 77 SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136
++ +G ++ Y DV A +VF+ + +++I + +I NG + +++F M
Sbjct: 73 NSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMC 132
Query: 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC-VVDMYGRAGL 195
V PD TF ++ ACS G + G + + + V + T +V MYG+ G
Sbjct: 133 GCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVG--LSSTLFVGNGLVSMYGKCGF 190
Query: 196 LEEAEAFIREMPIEAEWSVWGAL-LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM-- 252
L EA + EM + W +L + + R D+ + R+ K GT A +
Sbjct: 191 LSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLP 249
Query: 253 --SNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285
SNT E+ ++D +MG KK+ SW
Sbjct: 250 AVSNTTT-----ENVMYVKDMFFKMG--KKSLVSW 277
>sp|Q9LUS3|PP237_ARATH Pentatricopeptide repeat-containing protein At3g16610
OS=Arabidopsis thaliana GN=PCMP-E91 PE=2 SV=1
Length = 654
Score = 224 bits (570), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 183/286 (63%), Gaps = 4/286 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+DV+S+ ++I G EE+ +F EM +T P+ TL+ VL+ACS ++AL G
Sbjct: 372 KDVISYNSLITGCVVNCRPEESFRLFHEM-RTSGIRPDITTLLGVLTACSHLAALGHGSS 430
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
H Y + +V+ + NA+++MY KCG + +A +VF+ + +D++SW+T++ G ++G
Sbjct: 431 CHGYCVV-HGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHG 489
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST-VYEIVPQTQH 182
G++AL LF+ M GV PD+VT +A++SACSH GLVD+G LF +MS + ++P+ H
Sbjct: 490 LGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDH 549
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
Y C+ D+ RAG L+EA F+ +MP E + V G LL+AC ++N E+ + + +++
Sbjct: 550 YNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM-QSL 608
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
G + + L+SNT++ A+RWEDA +IR ++ GL K G SW++V
Sbjct: 609 GETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVDV 654
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 93/163 (57%), Gaps = 3/163 (1%)
Query: 2 PKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
P+ + ++W MI YA F E+A+ ++ +M + P + T VL AC+ + A+ G
Sbjct: 64 PRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSG-VRPTKYTYPFVLKACAGLRAIDDG 122
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ +HS+++ D + V A+++ Y KCG++ +AI+VF+ + +DM++W+ +ISG ++
Sbjct: 123 KLIHSHVNCS-DFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSL 181
Query: 122 NGCGRQALQLF-SLMIINGVFPDDVTFIALISACSHGGLVDQG 163
+ C + LF + I+G+ P+ T + + A G + +G
Sbjct: 182 HCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 119/249 (47%), Gaps = 8/249 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVF-QEMEKTKEAEPNEATLVNVLSACSSISALSFG 61
K++ V+W+ MIGGY E +EA VF Q + A + +L C+ LS G
Sbjct: 268 KKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGG 327
Query: 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAM 121
+ VH Y + + + V N +I+ Y K G + A + F+ + KD+IS++++I+G +
Sbjct: 328 RCVHCY-AVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVV 386
Query: 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ 181
N ++ +LF M +G+ PD T + +++ACSH + G V+ T
Sbjct: 387 NCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSC-HGYCVVHGYAVNTS 445
Query: 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH----RNDEMFDPIRQE 237
++DMY + G L+ A+ M + + W +L IH +F+ +++
Sbjct: 446 ICNALMDMYTKCGKLDVAKRVFDTMH-KRDIVSWNTMLFGFGIHGLGKEALSLFNSMQET 504
Query: 238 LVNKKGVSV 246
VN V++
Sbjct: 505 GVNPDEVTL 513
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 9/171 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MPKRD+V+W MI G++ + + +F +M + PN +T+V + A AL
Sbjct: 164 MPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALRE 223
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y TR S +V ++++Y K + A +VF++ K+ ++WS +I G
Sbjct: 224 GKAVHGY-CTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYV 282
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
N ++A ++F M++N D+V + ++ GL+ G F +S
Sbjct: 283 ENEMIKEAGEVFFQMLVN----DNVAMVTPVAI----GLILMGCARFGDLS 325
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%)
Query: 45 LVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM 103
+++L C L GQ +H ++ R LS S ++ N + +Y C +V +A VF+
Sbjct: 2 FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVN-LTRLYASCNEVELARHVFDE 60
Query: 104 LAYKDM--ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161
+ + + I+W +I A N +AL L+ M+ +GV P T+ ++ AC+ +D
Sbjct: 61 IPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAID 120
Query: 162 QGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
G ++ S V T Y C +VD Y + G LE A EMP + + W A++
Sbjct: 121 DGKLIH---SHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMP-KRDMVAWNAMI 176
Query: 220 NACRIH 225
+ +H
Sbjct: 177 SGFSLH 182
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KRD+VSW TM+ G+ G +EA+S+F M++T P+E TL+ +LSACS +
Sbjct: 470 MHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETG-VNPDEVTLLAILSACSHSGLVDE 528
Query: 61 GQYVHSYISTRYDLSVSNLVG--NAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVIS 117
G+ + + +S R D +V + N + ++ + G + A N + ++ D+ T++S
Sbjct: 529 GKQLFNSMS-RGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLS 587
Query: 118 G 118
Sbjct: 588 A 588
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 223 bits (569), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 184/290 (63%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD++SWT MI G+ ++G+ EEA+ F+EM+ + +P+ ++ L+AC+++ ALSF
Sbjct: 166 MPERDLISWTAMINGFVKKGYQEEALLWFREMQISG-VKPDYVAIIAALNACTNLGALSF 224
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +VH Y+ ++ D + V N++I++Y +CG V A QVF + + ++SW++VI G A
Sbjct: 225 GLWVHRYVLSQ-DFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFA 283
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG ++L F M G PD VTF ++ACSH GLV++GL F+ M Y I P+
Sbjct: 284 ANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRI 343
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF-DPIRQELV 239
+HY C+VD+Y RAG LE+A ++ MP++ V G+LL AC H N+ + + + + L
Sbjct: 344 EHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGNNIVLAERLMKHLT 403
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ S + ++SN +A +WE A+K+R +++ +GLKK+ G S IE++
Sbjct: 404 DLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEID 453
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 37/235 (15%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS--FGQY 63
VSWT+ I G EA F +M EPN T + +LS C ++ S G
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDM-TLAGVEPNHITFIALLSGCGDFTSGSEALGDL 94
Query: 64 VHSYISTRYDLSVSN-LVGNAVINMYVK-------------------------------C 91
+H Y + + L ++ +VG A+I MY K
Sbjct: 95 LHGY-ACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRS 153
Query: 92 GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151
G V A ++F+ + +D+ISW+ +I+G G +AL F M I+GV PD V IA +
Sbjct: 154 GQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAAL 213
Query: 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206
+AC++ G + GL + + + + + + ++D+Y R G +E A M
Sbjct: 214 NACTNLGALSFGLWVHRYVLS-QDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNM 267
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 98 IQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-- 155
IQ N + +SW++ I+ L NG +A + FS M + GV P+ +TFIAL+S C
Sbjct: 25 IQRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDF 84
Query: 156 -----------HGGLVDQGLI------------------LFKAMSTVYEIVPQTQH--YA 184
HG GL FK V++ + +
Sbjct: 85 TSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWN 144
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++D Y R+G ++ A +MP E + W A++N
Sbjct: 145 TMIDGYMRSGQVDNAAKMFDKMP-ERDLISWTAMING 180
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 223 bits (568), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 185/298 (62%), Gaps = 12/298 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA----------EPNEATLVNVLS 50
M RD+V+W TMI GY E+A+ + +M+ + +PN TL+ +L
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525
Query: 51 ACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI 110
+C+++SAL+ G+ +H+Y + + +L+ VG+A+++MY KCG + ++ +VF+ + K++I
Sbjct: 526 SCAALSALAKGKEIHAY-AIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584
Query: 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
+W+ +I M+G G++A+ L +M++ GV P++VTFI++ +ACSH G+VD+GL +F M
Sbjct: 585 TWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVM 644
Query: 171 STVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE-AEWSVWGALLNACRIHRNDE 229
Y + P + HYACVVD+ GRAG ++EA + MP + + W +LL A RIH N E
Sbjct: 645 KPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLE 704
Query: 230 MFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ + Q L+ + + L++N ++ A W+ A ++R ++ G++K+ GCSWIE
Sbjct: 705 IGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 118/252 (46%), Gaps = 15/252 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R + W MI GY++ +EA+ +F ME++ N T+ V+ AC A S
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ +H ++ R L V N +++MY + G + IA+++F + +D+++W+T+I+G
Sbjct: 424 KEAIHGFVVKR-GLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYV 482
Query: 121 MNGCGRQALQLFSLM------IING-----VFPDDVTFIALISACSHGGLVDQGLILFKA 169
+ AL L M + G + P+ +T + ++ +C+ + +G + A
Sbjct: 483 FSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI-HA 541
Query: 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRN-D 228
+ + + +VDMY + G L+ + ++P + W ++ A +H N
Sbjct: 542 YAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 600
Query: 229 EMFDPIRQELVN 240
E D +R +V
Sbjct: 601 EAIDLLRMMMVQ 612
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 6/164 (3%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSI---SALS 59
+R+ VSW ++I E A+ F+ M + EP+ TLV+V++ACS++ L
Sbjct: 161 ERNQVSWNSLISSLCSFEKWEMALEAFRCM-LDENVEPSSFTLVSVVTACSNLPMPEGLM 219
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH+Y + +L+ + + N ++ MY K G + + + +D+++W+TV+S L
Sbjct: 220 MGKQVHAYGLRKGELN--SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSL 277
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG 163
N +AL+ M++ GV PD+ T +++ ACSH ++ G
Sbjct: 278 CQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
RD+V+W T++ + EA+ +EM + EP+E T+ +VL ACS + L G+
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREM-VLEGVEPDEFTISSVLPACSHLEMLRTGKE 323
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H+Y L ++ VG+A+++MY C V +VF+ + + + W+ +I+G + N
Sbjct: 324 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 383
Query: 124 CGRQALQLFSLMIIN-GVFPDDVTFIALISACSHGGLVDQ-----GLILFKAMSTVYEIV 177
++AL LF M + G+ + T ++ AC G + G ++ + + V
Sbjct: 384 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFV 442
Query: 178 PQTQHYACVVDMYGRAGLLEEA 199
T ++DMY R G ++ A
Sbjct: 443 QNT-----LMDMYSRLGKIDIA 459
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W ++ EAV + +M +P+ +L A + + + G+ +H+++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDM-IVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 69 STRYDLSVSNL-VGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
++ V ++ V N ++N+Y KCGD G +VF+ ++ ++ +SW+++IS L
Sbjct: 124 -YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEM 182
Query: 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA--C 185
AL+ F M+ V P T +++++ACS+ + +GL++ K + + +
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKGELNSFIINT 241
Query: 186 VVDMYGRAGLLEEAEAFI 203
+V MYG+ G L ++ +
Sbjct: 242 LVAMYGKLGKLASSKVLL 259
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 186/289 (64%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP++D+V+W ++I G+AE G EEA++++ EM +K +P+ T+V++LSAC+ I AL+
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEM-NSKGIKPDGFTIVSLLSACAKIGALTL 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH Y+ + L+ + N ++++Y +CG V A +F+ + K+ +SW+++I GLA
Sbjct: 241 GKRVHVYM-IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLA 299
Query: 121 MNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG G++A++LF M G+ P ++TF+ ++ ACSH G+V +G F+ M Y+I P+
Sbjct: 300 VNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPR 359
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+H+ C+VD+ RAG +++A +I+ MP++ +W LL AC +H + ++ + R +++
Sbjct: 360 IEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQIL 419
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + L+SN +A RW D KIR ++ R G+KK G S +EV
Sbjct: 420 QLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEV 468
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 118/215 (54%), Gaps = 3/215 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V W T+I GYAE G A S+++EM + EP+ T ++ A ++++ + G+ +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
HS + R V N+++++Y CGDV A +VF+ + KD+++W++VI+G A NG
Sbjct: 144 HSVV-IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGK 202
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
+AL L++ M G+ PD T ++L+SAC+ G + G + M V +
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV-GLTRNLHSSN 261
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
++D+Y R G +EEA+ EM ++ W +L+
Sbjct: 262 VLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 295
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R VSWT +I GY ++G + +F +M + +++T VL A +S ++L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKM-RGSNLRADQSTFATVLKASASFASLLL 470
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H++I +L + G+ +++MY KCG + A+QVF + ++ +SW+ +IS A
Sbjct: 471 GKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG G A+ F+ MI +G+ PD V+ + +++ACSH G V+QG F+AMS +Y I P+
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC++D+ GR G EAE + EMP E + +W ++LNACRIH+N + + ++L +
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649
Query: 241 -KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+K + MSN +A A WE ++ +R G+KK SW+EVN I
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKI 702
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 8/223 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+ D VS+ +I Y++ E ++ F+EM+ N +LS +++S+L
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRN-FPFATMLSIAANLSSLQM 369
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H S+ + VGN++++MY KC A +F L + +SW+ +ISG
Sbjct: 370 GRQLHCQALLATADSILH-VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYV 428
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG--LVDQGLILFKAMSTVYEIVP 178
G L+LF+ M + + D TF ++ A + L+ + L F S E V
Sbjct: 429 QKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVF 488
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ +VDMY + G +++A EMP S W AL++A
Sbjct: 489 SG---SGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISA 527
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 100/211 (47%), Gaps = 7/211 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACS-SISAL 58
MP R VV+WT ++G YA +EA +F++M ++ P+ T +L C+ ++
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164
Query: 59 SFGQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ GQ VH++ + +D + V N ++ Y + + +A +F + KD ++++T+I+
Sbjct: 165 AVGQ-VHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223
Query: 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL-ILFKAMSTVYEI 176
G +G +++ LF M +G P D TF ++ A GL D L A+S
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV--GLHDFALGQQLHALSVTTGF 281
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
++D Y + + E EMP
Sbjct: 282 SRDASVGNQILDFYSKHDRVLETRMLFDEMP 312
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 6/221 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++D V++ T+I GY + G E++ +F +M ++ +P++ T VL A + +
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH-QPSDFTFSGVLKAVVGLHDFAL 268
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
GQ +H+ +S S VGN +++ Y K V +F+ + D +S++ VIS +
Sbjct: 269 GQQLHA-LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYS 327
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF-KAMSTVYEIVPQ 179
+L F M G + F ++S ++ + G L +A+ + +
Sbjct: 328 QADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILH 387
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
+ +VDMY + + EEAE + +P S W AL++
Sbjct: 388 VGN--SLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALIS 425
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING-- 139
N +I+ +VK GDV A +F+ + + +++W+ ++ A N +A +LF M +
Sbjct: 83 NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142
Query: 140 VFPDDVTFIALISACS 155
PD VTF L+ C+
Sbjct: 143 TLPDHVTFTTLLPGCN 158
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 221 bits (563), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 117/294 (39%), Positives = 189/294 (64%), Gaps = 5/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ RDVV+WT MI GY + G EA+++F+ M + PN TL +LS SS+++LS
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQ-RPNSYTLAAMLSVASSLASLSH 431
Query: 61 GQYVH-SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNML-AYKDMISWSTVISG 118
G+ +H S + + SVS V NA+I MY K G++ A + F+++ +D +SW+++I
Sbjct: 432 GKQIHGSAVKSGEIYSVS--VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIA 489
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
LA +G +AL+LF M++ G+ PD +T++ + SAC+H GLV+QG F M V +I+P
Sbjct: 490 LAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIP 549
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
HYAC+VD++GRAGLL+EA+ FI +MPIE + WG+LL+ACR+H+N ++ + L
Sbjct: 550 TLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERL 609
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + + G ++ ++N ++ +WE+A KIR ++ +KK+ G SWIEV +
Sbjct: 610 LLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 37/238 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+RD VSWTTMI GY G +A+ V +M K + EP + TL NVL++ ++ +
Sbjct: 106 LPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK-EGIEPTQFTLTNVLASVAATRCMET 164
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD----------------------VGIAI 98
G+ VHS+I + L + V N+++NMY KCGD + + +
Sbjct: 165 GKKVHSFI-VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHM 223
Query: 99 QV---------FNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFI 148
QV F +A +D+++W+++ISG G +AL +FS M+ + + PD T
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283
Query: 149 ALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+++SAC++ L I ++T ++I + ++ MY R G +E A I +
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLN--ALISMYSRCGGVETARRLIEQ 339
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 40/288 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+V+W +MI G+ +RG+ A+ +F +M + P+ TL +VLSAC+++ L
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKC----------------------------- 91
G+ +HS+I T +S +V NA+I+MY +C
Sbjct: 298 GKQIHSHIVTT-GFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDG 356
Query: 92 ----GDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
GD+ A +F L +D+++W+ +I G +G +A+ LF M+ G P+ T
Sbjct: 357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTL 416
Query: 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207
A++S S + G + + EI + A ++ MY +AG + A +
Sbjct: 417 AAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA-LITMYAKAGNITSASRAFDLIR 475
Query: 208 IEAEWSVWGALLNACRIHRND----EMFDPIRQELVNKKGVS-VGTFA 250
E + W +++ A H + E+F+ + E + ++ VG F+
Sbjct: 476 CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N V++ Y K GD+ + F+ L +D +SW+T+I G G +A+++ M+ G+
Sbjct: 84 NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143
Query: 142 PDDVTFIALISACS 155
P T ++++ +
Sbjct: 144 PTQFTLTNVLASVA 157
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 184/291 (63%), Gaps = 2/291 (0%)
Query: 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQ 62
K +VV+WT++I G +G ++++ F++M+ +K N T+ +LS C+ + AL+ G+
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSK-VLANSVTICCILSICAELPALNLGR 454
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H ++ R +S + LV NA++NMY KCG + VF + KD+ISW+++I G M+
Sbjct: 455 EIHGHV-IRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMH 513
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL +F MI +G PD + +A++SACSH GLV++G +F +MS + + PQ +H
Sbjct: 514 GFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLEPQQEH 573
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242
YAC+VD+ GR G L+EA ++ MP+E + V GALLN+CR+H+N ++ + I +L +
Sbjct: 574 YACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQLSVLE 633
Query: 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
G++ L+SN ++ RWE++ +R ++ LKK +G SWIEV +
Sbjct: 634 PERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKY 684
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 43/210 (20%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL----------- 49
MP R+ +SW MI G+++ CE AV +F+ M++ +E +P+E T +VL
Sbjct: 219 MPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQR-EEFKPDEVTWTSVLSCHSQCGKFED 277
Query: 50 ------------------------SACSSISALSFGQYVHSY-ISTRYDLSVSNLVGNAV 84
S C+ + ALS + VH Y I ++ + + NA+
Sbjct: 278 VLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPS--RNAL 335
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS----LMIINGV 140
I++Y K G V A +F + K + SW+++I+ G +AL LFS + + V
Sbjct: 336 IHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNV 395
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAM 170
+ VT+ ++I C+ G D L F+ M
Sbjct: 396 KANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 2/166 (1%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ W +++ G E A+ +++ M + + + L +L AC + +
Sbjct: 122 DLRLWNSILKANVSHGLYENALELYRGM-RQRGLTGDGYILPLILRACRYLGRFGLCRAF 180
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
H+ + + L + V N ++ +Y K G +G A +F + ++ +SW+ +I G +
Sbjct: 181 HTQV-IQIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYD 239
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170
A+++F M PD+VT+ +++S S G + L F M
Sbjct: 240 CESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLM 285
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 219 bits (559), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/290 (37%), Positives = 184/290 (63%), Gaps = 4/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +RD+VSW MI GYA+ GF +A+ +FQ++ + +P+E T+V LSACS I AL
Sbjct: 218 MCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALET 277
Query: 61 GQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++H ++ S+R L+V V +I+MY KCG + A+ VFN KD+++W+ +I+G
Sbjct: 278 GRWIHVFVKSSRIRLNVK--VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGY 335
Query: 120 AMNGCGRQALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
AM+G + AL+LF+ M I G+ P D+TFI + AC+H GLV++G+ +F++M Y I P
Sbjct: 336 AMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKP 395
Query: 179 QTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238
+ +HY C+V + GRAG L+ A I+ M ++A+ +W ++L +C++H + + I + L
Sbjct: 396 KIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYL 455
Query: 239 VNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ + G + L+SN +A +E K+R+ ++ G+ K+ G S IE+
Sbjct: 456 IGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEI 505
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 48/257 (18%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
D+ +T I + G ++A ++ ++ + E PNE T ++L +CS+ S G+ +
Sbjct: 94 DLFLFTAAINTASINGLKDQAFLLYVQL-LSSEINPNEFTFSSLLKSCSTKS----GKLI 148
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----------------- 107
H+++ ++ L + V ++++Y K GDV A +VF+ + +
Sbjct: 149 HTHV-LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGN 207
Query: 108 --------------DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALIS 152
D++SW+ +I G A +G AL LF ++ G PD++T +A +S
Sbjct: 208 VEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALS 267
Query: 153 ACSHGGLVDQG--LILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEAEAFIREMPI 208
ACS G ++ G + +F S + V C ++DMY + G LEEA + P
Sbjct: 268 ACSQIGALETGRWIHVFVKSSRIRLNVK-----VCTGLIDMYSKCGSLEEAVLVFNDTP- 321
Query: 209 EAEWSVWGALLNACRIH 225
+ W A++ +H
Sbjct: 322 RKDIVAWNAMIAGYAMH 338
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147
Y G + ++ +F+ D+ ++ I+ ++NG QA L+ ++ + + P++ TF
Sbjct: 74 YASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTF 133
Query: 148 IALISACS--HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205
+L+ +CS G L+ ++ F Y +VD+Y + G + A+
Sbjct: 134 SSLLKSCSTKSGKLIHTHVLKFGLGIDPYVAT-------GLVDVYAKGGDVVSAQKVFDR 186
Query: 206 MP 207
MP
Sbjct: 187 MP 188
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/288 (36%), Positives = 175/288 (60%), Gaps = 3/288 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +++ W MI GYA+ G+ EA+ +F EM K+ P+ ++ + +SAC+ + +L
Sbjct: 283 MKSPNLILWNAMISGYAKNGYAREAIDMFHEM-INKDVRPDTISITSAISACAQVGSLEQ 341
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ ++ Y+ R D + +A+I+M+ KCG V A VF+ +D++ WS +I G
Sbjct: 342 ARSMYEYVG-RSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYG 400
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G R+A+ L+ M GV P+DVTF+ L+ AC+H G+V +G F M+ ++I PQ
Sbjct: 401 LHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKINPQQ 459
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
QHYACV+D+ GRAG L++A I+ MP++ +VWGALL+AC+ HR+ E+ + Q+L +
Sbjct: 460 QHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFS 519
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ G + +SN +A A W+ ++R ++ GL K GCSW+EV
Sbjct: 520 IDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 126/231 (54%), Gaps = 16/231 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+R +VSWT ++ YA+ G EA+ +F +M K + +P+ LV+VL+A + + L
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM-DVKPDWVALVSVLNAFTCLQDLKQ 240
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ + + L + + ++ MY KCG V A +F+ + ++I W+ +ISG A
Sbjct: 241 GRSIHASV-VKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYA 299
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG R+A+ +F MI V PD ++ + ISAC+ G ++Q ++YE V ++
Sbjct: 300 KNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQA-------RSMYEYVGRS 352
Query: 181 QHY------ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
+ + ++DM+ + G +E A + + ++ + VW A++ +H
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGAR-LVFDRTLDRDVVVWSAMIVGYGLH 402
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 8/223 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P+ + W +I GY+ ++A+ ++ M+ + P+ T ++L ACS +S L
Sbjct: 79 LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLAR-VSPDSFTFPHLLKACSGLSHLQM 137
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118
G++VH+ + R V N +I +Y KC +G A VF L + ++SW+ ++S
Sbjct: 138 GRFVHAQV-FRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV-YEIV 177
A NG +AL++FS M V PD V +++++A + + QG + ++ + EI
Sbjct: 197 YAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIE 256
Query: 178 PQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLN 220
P + MY + G + A+ +M +W A+++
Sbjct: 257 PDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMIS 296
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFS 133
L S + +I+ GD+ A QVF+ L + W+ +I G + N + AL ++S
Sbjct: 49 LQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYS 108
Query: 134 LMIINGVFPDDVTFIALISACS-----------HGGL----------VDQGLILFKA--- 169
M + V PD TF L+ ACS H + V GLI A
Sbjct: 109 NMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCR 168
Query: 170 ----MSTVYEIVPQTQH----YACVVDMYGRAG-LLEEAEAF--IREMPIEAEWSVWGAL 218
TV+E +P + + +V Y + G +E E F +R+M ++ +W ++
Sbjct: 169 RLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSV 228
Query: 219 LNA 221
LNA
Sbjct: 229 LNA 231
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 219 bits (557), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 175/287 (60%), Gaps = 2/287 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP + +++W +I GY++ G + + ++++M K+ P+ TLV+VLS+C+ + A
Sbjct: 217 MPVKGLITWNAVISGYSQNGLAYDVLELYEQM-KSSGVCPDPFTLVSVLSSCAHLGAKKI 275
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G V + + + V NA I+MY +CG++ A VF+++ K ++SW+ +I
Sbjct: 276 GHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYG 334
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
M+G G L LF MI G+ PD F+ ++SACSH GL D+GL LF+AM Y++ P
Sbjct: 335 MHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGP 394
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY+C+VD+ GRAG L+EA FI MP+E + +VWGALL AC+IH+N +M + +++
Sbjct: 395 EHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE 454
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIE 287
+ ++G + LMSN ++ + E +IR +R +KK G S++E
Sbjct: 455 FEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVE 501
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 116/241 (48%), Gaps = 8/241 (3%)
Query: 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHS 66
V + +I GY +A +F+ M++T + T++ ++ C+ L G+ +H
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETG-VSVDSVTMLGLVPLCTVPEYLWLGRSLHG 180
Query: 67 YISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126
+ L V N+ I MY+KCG V ++F+ + K +I+W+ VISG + NG
Sbjct: 181 QC-VKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAY 239
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186
L+L+ M +GV PD T ++++S+C+H G G + K + + VP
Sbjct: 240 DVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVES-NGFVPNVFVSNAS 298
Query: 187 VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE----MFDPIRQELVNKK 242
+ MY R G L +A A MP+++ S W A++ +H E +FD + + +
Sbjct: 299 ISMYARCGNLAKARAVFDIMPVKSLVS-WTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357
Query: 243 G 243
G
Sbjct: 358 G 358
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 31/259 (11%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W + A + E++S+++ M ++ + P+ + +L +C+S+S GQ +H ++
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSS-PDAFSFPFILKSCASLSLPVSGQQLHCHV 79
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF--NMLAYKDMISWSTVISGLAMNGCGR 126
T+ V A+I+MY KCG V A +VF N + + + ++ +ISG N
Sbjct: 80 -TKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138
Query: 127 QALQLFSLMIINGVFPDDVTFIALISACS-----------HGGLVDQGLILFKAMSTVYE 175
A +F M GV D VT + L+ C+ HG V GL A+ +
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSF- 197
Query: 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIR 235
+ MY + G +E EMP++ W A+++ +N +D +
Sbjct: 198 -----------ITMYMKCGSVEAGRRLFDEMPVKG-LITWNAVISG--YSQNGLAYDVLE 243
Query: 236 -QELVNKKGVSVGTFALMS 253
E + GV F L+S
Sbjct: 244 LYEQMKSSGVCPDPFTLVS 262
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 183/293 (62%), Gaps = 4/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M RD +W MI Y +GF EA+ +F +M+K + P+ +L+++LS C+++++L +
Sbjct: 291 MEDRDNATWRGMIKAYERKGFELEALDLFAQMQK-QGVRPSFPSLISILSVCATLASLQY 349
Query: 61 GQYVHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+ VH++ + ++D V V + ++ MYVKCG++ A VF+ + KD+I W+++ISG
Sbjct: 350 GRQVHAHLVRCQFDDDV--YVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGY 407
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A +G G +AL++F M +G P+ VT IA+++ACS+ G +++GL +F++M + + + P
Sbjct: 408 ASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPT 467
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HY+C VDM GRAG +++A I M I+ + +VWGALL AC+ H ++ + ++L
Sbjct: 468 VEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLF 527
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+S+ A +W D +R +R + K GCSWIEV +
Sbjct: 528 ENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKV 580
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 105/263 (39%), Gaps = 61/263 (23%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +DVV+ T MIGG G +EA +F EM E N T +++ + +
Sbjct: 167 MPVKDVVASTNMIGGLCREGRVDEARLIFDEMR-----ERNVVTWTTMITGYRQNNRVDV 221
Query: 61 GQYVHSYISTRYDLS-VSNLVG-------------------------NAVINMYVKCGDV 94
+ + + + ++S S L+G NA+I + + G++
Sbjct: 222 ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEI 281
Query: 95 GIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154
A +VF+++ +D +W +I G +AL LF+ M GV P + I+++S C
Sbjct: 282 SKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVC 341
Query: 155 S-----------HGGLV----DQGLILFKAMSTVY----EIVPQTQ-----------HYA 184
+ H LV D + + + T+Y E+V +
Sbjct: 342 ATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWN 401
Query: 185 CVVDMYGRAGLLEEAEAFIREMP 207
++ Y GL EEA EMP
Sbjct: 402 SIISGYASHGLGEEALKIFHEMP 424
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 103/225 (45%), Gaps = 28/225 (12%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+VVSWT M+ GY + G EA S+F M E NE + + +
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRM-----PERNEVSWTVMFGGLIDDGRIDK 159
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ ++ + + ++ +N++G + G V A +F+ + +++++W+T+I+G
Sbjct: 160 ARKLYDMMPVKDVVASTNMIGG-----LCREGRVDEARLIFDEMRERNVVTWTTMITGYR 214
Query: 121 MNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP 178
N A +LF +M P+ +V++ +++ + G ++ +E++P
Sbjct: 215 QNNRVDVARKLFEVM------PEKTEVSWTSMLLGYTLSGRIEDA-------EEFFEVMP 261
Query: 179 QTQHYAC--VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
AC ++ +G G + +A M + + + W ++ A
Sbjct: 262 MKPVIACNAMIVGFGEVGEISKARRVFDLME-DRDNATWRGMIKA 305
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 18/158 (11%)
Query: 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144
I+ + G + A + F+ L +K + SW++++SG NG ++A QLF M V
Sbjct: 24 ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79
Query: 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAF 202
V++ L+S G + +I+ V+E++P+ + +V Y + G++ EAE+
Sbjct: 80 VSWNGLVS-----GYIKNRMIV--EARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESL 132
Query: 203 IREMPI--EAEWSV-WGALLNACRIHRNDEMFD--PIR 235
MP E W+V +G L++ RI + +++D P++
Sbjct: 133 FWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVK 170
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 94/209 (44%), Gaps = 19/209 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VVSW ++ GY + EA +VF+ M E N + ++ +
Sbjct: 74 MSERNVVSWNGLVSGYIKNRMIVEARNVFELM-----PERNVVSWTAMVKGYMQEGMVGE 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R ++S + + G + + G + A ++++M+ KD+++ + +I GL
Sbjct: 129 AESLFWRMPERNEVSWTVMFGGLIDD-----GRIDKARKLYDMMPVKDVVASTNMIGGLC 183
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
G +A +F M V VT+ +I+ VD LF+ M E+
Sbjct: 184 REGRVDEARLIFDEMRERNV----VTWTTMITGYRQNNRVDVARKLFEVMPEKTEV---- 235
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++ Y +G +E+AE F MP++
Sbjct: 236 -SWTSMLLGYTLSGRIEDAEEFFEVMPMK 263
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 94/207 (45%), Gaps = 24/207 (11%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N++++ Y G A Q+F+ ++ ++++SW+ ++SG N +A +F LM V
Sbjct: 52 NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNV- 110
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
V++ A++ G+V + LF M E V T + ++D G +++A
Sbjct: 111 ---VSWTAMVKGYMQEGMVGEAESLFWRMPERNE-VSWTVMFGGLID----DGRIDKARK 162
Query: 202 FIREMPIEAEWSVWGALLNACRIHRNDE---MFDPIRQELVNKKGVSVGTFALMSNTFAG 258
MP++ + + CR R DE +FD +R+ +V T+ M +
Sbjct: 163 LYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRER-------NVVTWTTMITGYRQ 215
Query: 259 ADRWEDANKIRDEIRRMGLKKKTGCSW 285
+R + A K+ + + +KT SW
Sbjct: 216 NNRVDVARKLFEV-----MPEKTEVSW 237
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 218 bits (555), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 178/289 (61%), Gaps = 3/289 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R++VSW TMIGGY + +E + +FQEM+ T +P++ T+++VL A S ALS
Sbjct: 233 MPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSL 292
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ H ++ R L V A+++MY KCG++ A ++F+ + K + SW+ +I G A
Sbjct: 293 GEWCHCFVQ-RKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYA 351
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG R AL LF M+I PD++T +A+I+AC+HGGLV++G F M + + +
Sbjct: 352 LNGNARAALDLFVTMMIEEK-PDEITMLAVITACNHGGLVEEGRKWFHVMREM-GLNAKI 409
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD+ GRAG L+EAE I MP E + + L+AC +++ E + I ++ V
Sbjct: 410 EHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVE 469
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ + G + L+ N +A RW+D +++ +R+ KK+ GCS IE+N
Sbjct: 470 LEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEIN 518
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 29/294 (9%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALS- 59
MP R VSWT +I GY G + A +F +M K+ A + + + SA
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
F + H + T +I+ Y D+ A ++F+ + ++++SW+T+I G
Sbjct: 199 FDEMTHKTVIT----------WTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGY 248
Query: 120 AMNGCGRQALQLFSLM-IINGVFPDDVTFIALISACSHGGLVDQG-----LILFKAMSTV 173
N ++ ++LF M + PDDVT ++++ A S G + G + K +
Sbjct: 249 CQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKK 308
Query: 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE-MFD 232
++ ++DMY + G +E+A+ EMP E + + W A+++ ++ N D
Sbjct: 309 VKVC------TAILDMYSKCGEIEKAKRIFDEMP-EKQVASWNAMIHGYALNGNARAALD 361
Query: 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT---GC 283
++ +K + A+++ G E+ K +R MGL K GC
Sbjct: 362 LFVTMMIEEKPDEITMLAVITACNHGG-LVEEGRKWFHVMREMGLNAKIEHYGC 414
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 5/171 (2%)
Query: 2 PKRDVVSWT-TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
P+RD + +MI Y E ++ ++++++ K P+ T + +CS +
Sbjct: 37 PQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQ 96
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +HS I R+ V V++MY K G +G A F+ + ++ +SW+ +ISG
Sbjct: 97 GLQLHSQI-WRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYI 155
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
G A +LF M D V + A++ G + LF M+
Sbjct: 156 RCGELDLASKLFDQM---PHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYAC--VVDMYGRAGLLEEA 199
PD+ TF L +CS V QGL L S ++ Y VVDMY + G + A
Sbjct: 76 PDNFTFTTLTKSCSLSMCVYQGLQLH---SQIWRFGFCADMYVSTGVVDMYAKFGKMGCA 132
Query: 200 EAFIREMPIEAEWSVWGALLNA 221
EMP +E S W AL++
Sbjct: 133 RNAFDEMPHRSEVS-WTALISG 153
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 217 bits (553), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 183/293 (62%), Gaps = 3/293 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+ SW T+I + GF EA+ +F M+K + P TL+++LS C+S+++L
Sbjct: 291 MKERNDASWQTVIKIHERNGFELEALDLFILMQK-QGVRPTFPTLISILSVCASLASLHH 349
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH+ + R V V + ++ MY+KCG++ + +F+ KD+I W+++ISG A
Sbjct: 350 GKQVHAQL-VRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYA 408
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+G G +AL++F M ++G P++VTF+A +SACS+ G+V++GL ++++M +V+ + P
Sbjct: 409 SHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPI 468
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
T HYAC+VDM GRAG EA I M +E + +VWG+LL ACR H ++ + ++L+
Sbjct: 469 TAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLI 528
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + GT+ L+SN +A RW D ++R ++ ++K GCSW EV +
Sbjct: 529 EIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKV 581
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 99/238 (41%), Gaps = 40/238 (16%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R V++WTTM+ GY + ++A +F M E E + ++L +
Sbjct: 198 MSERSVITWTTMVTGYGQNNRVDDARKIFDVM-----PEKTEVSWTSMLMGYVQNGRIED 252
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + + ++ NA+I+ + G++ A +VF+ + ++ SW TVI
Sbjct: 253 AEELFEVMPVKPVIAC-----NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHE 307
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS------HGGLVDQGLILFKAMSTVY 174
NG +AL LF LM GV P T I+++S C+ HG V L+ + VY
Sbjct: 308 RNGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVY 367
Query: 175 -EIVPQTQHYAC-----------------------VVDMYGRAGLLEEAEAFIREMPI 208
V T + C ++ Y GL EEA EMP+
Sbjct: 368 VASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPL 425
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP R+++SW ++ GY + G +EA VF M + NV+S + +
Sbjct: 74 MPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPER-----------NVVSWTALVKGYVH 122
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINM-YVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
V S + + N V V+ + +++ G + A +++ M+ KD I+ +++I GL
Sbjct: 123 NGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGL 182
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
G +A ++F M V +T+ +++ VD +F M E+
Sbjct: 183 CKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEKTEV--- 235
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIE 209
+ ++ Y + G +E+AE MP++
Sbjct: 236 --SWTSMLMGYVQNGRIEDAEELFEVMPVK 263
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ + SW +M+ GY +A +F EM + N + ++S + +
Sbjct: 46 KSISSWNSMVAGYFANLMPRDARKLFDEM-----PDRNIISWNGLVSGYMKNGEIDEARK 100
Query: 64 VHSYISTRYDLSVSNLVG-NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
V + R N+V A++ YV G V +A +F + K+ +SW+ ++ G +
Sbjct: 101 VFDLMPER------NVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQD 154
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G A +L+ ++ D++ ++I G VD+ +F MS I
Sbjct: 155 GRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVIT----- 205
Query: 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL----NACRIHRNDEMFD--PIR 235
+ +V YG+ +++A MP + E S W ++L RI +E+F+ P++
Sbjct: 206 WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSMLMGYVQNGRIEDAEELFEVMPVK 263
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 99/245 (40%), Gaps = 49/245 (20%)
Query: 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQL 131
Y ++ N I + G + A ++F+ K + SW+++++G N R A +L
Sbjct: 11 YSTTIPPPTANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKL 70
Query: 132 FSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVV 187
F M PD +++ L+S G +D+ V++++P+ + +V
Sbjct: 71 FDEM------PDRNIISWNGLVSGYMKNGEIDEA-------RKVFDLMPERNVVSWTALV 117
Query: 188 DMYGRAGLLEEAEAFIREMPIEAE--WSVW-------GALLNACRIHR------------ 226
Y G ++ AE+ +MP + + W+V G + +AC+++
Sbjct: 118 KGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTS 177
Query: 227 ------NDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280
+ D R+ SV T+ M + +R +DA KI D + +K
Sbjct: 178 MIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFD-----VMPEK 232
Query: 281 TGCSW 285
T SW
Sbjct: 233 TEVSW 237
>sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570
OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1
Length = 550
Score = 217 bits (552), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 166/282 (58%), Gaps = 1/282 (0%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
DV +W+ +I GYA+ G EA VF EM K +P+E +V ++SACS + + V
Sbjct: 268 DVRAWSALILGYAQNGQPNEAFKVFSEM-CAKNVKPDEFIMVGLMSACSQMGCFELCEKV 326
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGC 124
SY+ R + S+ V A+I+M KCG + A ++F + +D++S+ +++ G+A++GC
Sbjct: 327 DSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGC 386
Query: 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184
G +A++LF M+ G+ PD+V F ++ C LV++GL F+ M Y I+ HY+
Sbjct: 387 GSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYS 446
Query: 185 CVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244
C+V++ R G L+EA I+ MP EA S WG+LL C +H N E+ + + + L +
Sbjct: 447 CIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFELEPQ 506
Query: 245 SVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286
S G++ L+SN +A DRW D +RD++ G+ K G SWI
Sbjct: 507 SAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ VSWT ++ Y + G EEA S+F M E N + ++ L
Sbjct: 171 MPERNAVSWTALVVAYVKSGELEEAKSMFDLM-----PERNLGSWNALVDGLVKSGDLVN 225
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ + + R +S +++ I+ Y K GD+ A +F D+ +WS +I G A
Sbjct: 226 AKKLFDEMPKRDIISYTSM-----IDGYAKGGDMVSARDLFEEARGVDVRAWSALILGYA 280
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ- 179
NG +A ++FS M V PD+ + L+SACS G + + K S +++ + +
Sbjct: 281 QNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFE---LCEKVDSYLHQRMNKF 337
Query: 180 TQHY--ACVVDMYGRAGLLEEAEAFIREMP 207
+ HY ++DM + G ++ A EMP
Sbjct: 338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMP 367
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 14/207 (6%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P W +I GY+ + E VS+ M +T A P+E T V+ CS+ +
Sbjct: 69 VPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRV 128
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + R +VG + ++ Y KC D+ A +VF + ++ +SW+ ++
Sbjct: 129 GSSVHGLV-LRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYV 187
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G +A +F LM + ++ AL+ GLV G ++ +++ +P+
Sbjct: 188 KSGELEEAKSMFDLMPERNL----GSWNALVD-----GLVKSGDLV--NAKKLFDEMPKR 236
Query: 181 Q--HYACVVDMYGRAGLLEEAEAFIRE 205
Y ++D Y + G + A E
Sbjct: 237 DIISYTSMIDGYAKGGDMVSARDLFEE 263
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD+VS+ +M+ G A G EA+ +F++M + P+E +L C +
Sbjct: 366 MPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKM-VDEGIVPDEVAFTVILKVCGQSRLVEE 424
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISGL 119
G + +Y + S + ++N+ + G + A ++ + ++ S W +++ G
Sbjct: 425 GLRYFELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGC 484
Query: 120 AMNG 123
+++G
Sbjct: 485 SLHG 488
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 179/285 (62%), Gaps = 2/285 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R+VV WTT+I G+A+ EA +F++M + + PN+ TL +L +CSS+ +L G+
Sbjct: 275 RNVVMWTTLISGFAKCERAVEAFDLFRQMLR-ESILPNQCTLAAILVSCSSLGSLRHGKS 333
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH Y+ R + + + + I+MY +CG++ +A VF+M+ +++ISWS++I+ +NG
Sbjct: 334 VHGYM-IRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGING 392
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL F M V P+ VTF++L+SACSH G V +G F++M+ Y +VP+ +HY
Sbjct: 393 LFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHY 452
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
AC+VD+ GRAG + EA++FI MP++ S WGALL+ACRIH+ ++ I ++L++ +
Sbjct: 453 ACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEP 512
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288
+ L+SN +A A WE N +R ++ G +K G S EV
Sbjct: 513 EKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQSATEV 557
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 3/221 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R+ V W ++ GY + E +F M T A + TL+ ++ AC ++ A
Sbjct: 170 IPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLA-LDALTLICLVKACGNVFAGKV 228
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ VH R + S+ + ++I+MYVKC + A ++F ++++ W+T+ISG A
Sbjct: 229 GKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFA 288
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+A LF M+ + P+ T A++ +CS G + G + M I
Sbjct: 289 KCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYM-IRNGIEMDA 347
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
++ +DMY R G ++ A MP E W +++NA
Sbjct: 348 VNFTSFIDMYARCGNIQMARTVFDMMP-ERNVISWSSMINA 387
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 112/242 (46%), Gaps = 12/242 (4%)
Query: 3 KRDVVSWTTMIGGYAERGFC--EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
KR+ SW T++ GY++ C + + ++ M + + + LV + AC + L
Sbjct: 69 KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDG-VDSFNLVFAIKACVGLGLLEN 127
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G +H ++ + L + V +++ MY + G + A +VF+ + ++ + W ++ G
Sbjct: 128 GILIHG-LAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYL 186
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH--GGLVDQGLILFKAMSTVYEIVP 178
+ +LF LM G+ D +T I L+ AC + G V + + +S +
Sbjct: 187 KYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCV---HGVSIRRSFID 243
Query: 179 QTQHY-ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA-CRIHRNDEMFDPIRQ 236
Q+ + A ++DMY + LL+ A E ++ +W L++ + R E FD RQ
Sbjct: 244 QSDYLQASIIDMYVKCRLLDNARKLF-ETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302
Query: 237 EL 238
L
Sbjct: 303 ML 304
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+V+SW++MI + G EEA+ F +M K++ PN T V++LSACS +
Sbjct: 373 MPERNVISWSSMINAFGINGLFEEALDCFHKM-KSQNVVPNSVTFVSLLSACSHSGNVKE 431
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS-WSTVISG 118
G ++ Y + ++++ + G++G A + + K M S W ++S
Sbjct: 432 GWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSA 490
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/289 (39%), Positives = 173/289 (59%), Gaps = 2/289 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VSWT MI GY G EA+ F+EM+ EP+E +L++VL +C+ + +L
Sbjct: 201 MLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQLGSLEL 259
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++H Y R L + V NA+I MY KCG + AIQ+F + KD+ISWST+ISG A
Sbjct: 260 GKWIHLYAERRGFLKQTG-VCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYA 318
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+G A++ F+ M V P+ +TF+ L+SACSH G+ +GL F M Y+I P+
Sbjct: 319 YHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKI 378
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C++D+ RAG LE A + MP++ + +WG+LL++CR N ++ LV
Sbjct: 379 EHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVE 438
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
+ +G + L++N +A +WED +++R IR +KK G S IEVN
Sbjct: 439 LEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVN 487
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/305 (19%), Positives = 136/305 (44%), Gaps = 41/305 (13%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
+V + ++I Y + + +++++ + P+ T + +C+S+ + G+ V
Sbjct: 72 NVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQV 131
Query: 65 HSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISW------------ 112
H ++ ++ + NA+I+MY+K D+ A +VF+ + +D+ISW
Sbjct: 132 HGHL-CKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190
Query: 113 -------------------STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153
+ +ISG GC +A+ F M + G+ PD+++ I+++ +
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250
Query: 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS 213
C+ G ++ G + + + QT +++MY + G++ +A +M + S
Sbjct: 251 CAQLGSLELGKWI-HLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVIS 309
Query: 214 VWGALLNACRIHRND----EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIR 269
W +++ H N E F+ +++ V G+ TF + + + W++ +
Sbjct: 310 -WSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGI---TFLGLLSACSHVGMWQEGLRYF 365
Query: 270 DEIRR 274
D +R+
Sbjct: 366 DMMRQ 370
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 174/289 (60%), Gaps = 2/289 (0%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+++V+W MI GY E E+ + +F+ M + + PN + L + L CS +SAL G+
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLE-EGIRPNSSGLSSALLGCSELSALQLGRQ 305
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
+H +S + L ++I+MY KCG++G A ++F ++ KD+++W+ +ISG A +G
Sbjct: 306 IHQIVS-KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
+AL LF MI N + PD +TF+A++ AC+H GLV+ G+ F++M Y++ PQ HY
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHY 424
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243
C+VD+ GRAG LEEA IR MP +V+G LL ACR+H+N E+ + ++L+
Sbjct: 425 TCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNS 484
Query: 244 VSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + ++N +A +RWED ++R ++ + K G SWIE+ +
Sbjct: 485 QNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKV 533
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 104/243 (42%), Gaps = 13/243 (5%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP +D SW TMI GYA RG E+A +F M E NE + ++S L
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKARELFYSM-----MEKNEVSWNAMISGYIECGDLEK 204
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF-NMLAYKDMISWSTVISGL 119
+ R + A+I Y+K V +A +F +M K++++W+ +ISG
Sbjct: 205 ASHFFKVAPVR-----GVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY 259
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
N L+LF M+ G+ P+ + + CS + G + + +S +
Sbjct: 260 VENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-TLCND 318
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
++ MY + G L +A M + + W A+++ H N + + +E++
Sbjct: 319 VTALTSLISMYCKCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNADKALCLFREMI 377
Query: 240 NKK 242
+ K
Sbjct: 378 DNK 380
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M K+DVV+W MI GYA+ G ++A+ +F+EM K P+ T V VL AC+ ++
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNK-IRPDWITFVAVLLACNHAGLVNI 403
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107
G + Y + ++++ + G + A+++ + ++
Sbjct: 404 GMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFR 450
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVF 141
N +++ YV+ + A F+ + +KD SW+T+I+G A G +A +LF M+
Sbjct: 128 NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK--- 184
Query: 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201
++V++ A+IS G +++ FK ++ V +V T ++ Y +A +E AEA
Sbjct: 185 -NEVSWNAMISGYIECGDLEKASHFFK-VAPVRGVVAWT----AMITGYMKAKKVELAEA 238
Query: 202 FIREMPIEAEWSVWGALLN 220
++M + W A+++
Sbjct: 239 MFKDMTVNKNLVTWNAMIS 257
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG-RQALQLFSLMIINGV 140
N +I V+ GD+ A++VF+ + K+ I+W++++ G++ + +A QLF +
Sbjct: 65 NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEI----P 120
Query: 141 FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--QTQHYACVVDMYGRAGLLEE 198
PD ++ ++S + F+ + ++ +P + ++ Y R G +E+
Sbjct: 121 EPDTFSYNIMLSCYVRN-------VNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEK 173
Query: 199 AEAFIREMPIEAEWSVWGALLN 220
A M + E S W A+++
Sbjct: 174 ARELFYSMMEKNEVS-WNAMIS 194
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 178/301 (59%), Gaps = 14/301 (4%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+R+ V+WT M+ GY GF E + + EM N TL ++LSAC+ L
Sbjct: 203 MPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVV 262
Query: 61 GQYVHSYISTR---------YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS 111
G++VH Y + YD +VG A+++MY KCG++ ++ VF ++ +++++
Sbjct: 263 GRWVHVYALKKEMMMGEEASYD---DVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVT 319
Query: 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171
W+ + SGLAM+G GR + +F MI V PDD+TF A++SACSH G+VD+G F ++
Sbjct: 320 WNALFSGLAMHGKGRMVIDMFPQMI-REVKPDDLTFTAVLSACSHSGIVDEGWRCFHSLR 378
Query: 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231
Y + P+ HYAC+VD+ GRAGL+EEAE +REMP+ V G+LL +C +H E+
Sbjct: 379 -FYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIA 437
Query: 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291
+ I++EL+ + LMSN + R + A+ +R +R+ G++K G S I VN S
Sbjct: 438 ERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDS 497
Query: 292 I 292
+
Sbjct: 498 V 498
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 41/268 (15%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++D V WTT++ ++ G ++ +F EM + K E ++ ++V + C+ + L F
Sbjct: 71 LSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRR-KRVEIDDVSVVCLFGVCAKLEDLGF 129
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTV----- 115
Q H ++ + + S V NA+++MY KCG V ++F L K ++SW+ V
Sbjct: 130 AQQGHG-VAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVV 188
Query: 116 --------------------------ISGLAMNGCGRQALQLFSLMIIN-GVFPDDVTFI 148
++G G R+ L+L + M+ G + VT
Sbjct: 189 KWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLC 248
Query: 149 ALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY------ACVVDMYGRAGLLEEAEAF 202
+++SAC+ G + G + ++ + Y +VDMY + G ++ +
Sbjct: 249 SMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNV 308
Query: 203 IREMPIEAEWSVWGALLNACRIHRNDEM 230
R M + W AL + +H M
Sbjct: 309 FRLMR-KRNVVTWNALFSGLAMHGKGRM 335
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 84/175 (48%), Gaps = 12/175 (6%)
Query: 48 VLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNM--L 104
+L C+ S L G+ +H+ ++T + + + NA+ Y G++ A ++F+ L
Sbjct: 12 LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71
Query: 105 AYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH---GGLVD 161
+ KD + W+T++S + G +++LF M V DDV+ + L C+ G
Sbjct: 72 SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EWSV 214
QG ++ ++ + ++DMYG+ GL+ E + E+ ++ W+V
Sbjct: 132 QG----HGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTV 182
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 187/292 (64%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M +R+VV+W ++I +++ E ++F++M++ + + ATL +L ACS ++AL
Sbjct: 297 MSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQE-EMIGFSWATLTTILPACSRVAALLT 355
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H+ I + L+ N++++MY KCG+V + +VF+++ KD+ SW+ +++ A
Sbjct: 356 GKEIHAQILKSKEKPDVPLL-NSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYA 414
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
+NG + + LF MI +GV PD +TF+AL+S CS GL + GL LF+ M T + + P
Sbjct: 415 INGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPAL 474
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HYAC+VD+ GRAG ++EA I MP + S+WG+LLN+CR+H N + + +EL
Sbjct: 475 EHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFV 534
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + ++SN +A A W++ +KIR+ +++ G+KK+ GCSW++V I
Sbjct: 535 LEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKI 586
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 101/221 (45%), Gaps = 4/221 (1%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYI 68
W M GY+ G +A+ V+ +M EP ++ L AC + L G+ +H+ I
Sbjct: 204 WAAMAIGYSRNGSPRDALIVYVDM-LCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQI 262
Query: 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQA 128
R + V +V N ++ +Y++ G A +VF+ ++ +++++W+++IS L+ +
Sbjct: 263 VKRKE-KVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEM 321
Query: 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188
LF M + T ++ ACS + G + + E P ++D
Sbjct: 322 FNLFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKE-KPDVPLLNSLMD 380
Query: 189 MYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDE 229
MYG+ G +E + M + + + W +LN I+ N E
Sbjct: 381 MYGKCGEVEYSRRVFDVM-LTKDLASWNIMLNCYAINGNIE 420
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 101/232 (43%), Gaps = 9/232 (3%)
Query: 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL 74
G ++ +EAV++ + + ++L AC S +L G + S I L
Sbjct: 104 GLSKSTKLDEAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSL 163
Query: 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS---WSTVISGLAMNGCGRQALQL 131
+ + + +I ++ C + +A ++F+ + +++ W+ + G + NG R AL +
Sbjct: 164 RHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIV 223
Query: 132 FSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191
+ M+ + + P + + + AC + G + + E V Q Y ++ +Y
Sbjct: 224 YVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVV-YNVLLKLYM 282
Query: 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNA----CRIHRNDEMFDPIRQELV 239
+GL ++A M E W +L++ R+H +F +++E++
Sbjct: 283 ESGLFDDARKVFDGMS-ERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMI 333
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 215 bits (547), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 170/293 (58%), Gaps = 2/293 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P++DVVSW +I G+ G ++ F M P+ +V VL +CS + L
Sbjct: 325 IPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQ 384
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
+ HSY+ +Y + +G +++ +Y +CG +G A +VFN +A KD + W+++I+G
Sbjct: 385 AKCFHSYV-IKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITGYG 443
Query: 121 MNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
++G G +AL+ F+ M+ + V P++VTF++++SACSH GL+ +GL +FK M Y + P
Sbjct: 444 IHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLAPN 503
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYA +VD+ GR G L+ A + MP + G LL ACRIH+N EM + + ++L
Sbjct: 504 LEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKKLF 563
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ G + LMSN + WE+ K+R+ +++ G+KK S IE+ +
Sbjct: 564 ELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKV 616
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ ++DV+SW+T+I Y + G EA+ VF +M EPN AT++ VL AC++ L
Sbjct: 224 IAEKDVISWSTVIACYVQNGAAAEALLVFNDM-MDDGTEPNVATVLCVLQACAAAHDLEQ 282
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H ++ R L V A+++MY+KC A VF+ + KD++SW +ISG
Sbjct: 283 GRKTHE-LAIRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFT 341
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
+NG ++++ FS+M++ N PD + + ++ +CS G ++Q F + Y
Sbjct: 342 LNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKC-FHSYVIKYGFDSN 400
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
A +V++Y R G L A + ++ + VW +L+ IH
Sbjct: 401 PFIGASLVELYSRCGSLGNASKVFNGIALK-DTVVWTSLITGYGIH 445
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M KR + W T++ + EE + F M + +E +P+ TL L AC + +++
Sbjct: 20 MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEE-KPDNFTLPVALKACGELREVNY 78
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ +H ++ L VG+++I MY+KCG + A+++F+ L D+++WS+++SG
Sbjct: 79 GEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFE 138
Query: 121 MNGCGRQALQLFSLMII-NGVFPDDVTFIALISACS 155
NG QA++ F M++ + V PD VT I L+SAC+
Sbjct: 139 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 174
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 97 AIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156
A Q+F + + + W+T++ L+ + L FS M + PD+ T + AC
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72
Query: 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWS 213
V+ G ++ + + + ++ MY + G + EA E+ P WS
Sbjct: 73 LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWS 131
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 179/292 (61%), Gaps = 2/292 (0%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M ++D+V+W+TMI GYA F +E + +F +M + + +P++ ++V LS+C+S+ AL
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ-ENLKPDQFSIVGFLSSCASLGALDL 331
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G++ S I R++ + + NA+I+MY KCG + +VF + KD++ + ISGLA
Sbjct: 332 GEWGISLID-RHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLA 390
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
NG + + +F G+ PD TF+ L+ C H GL+ GL F A+S VY +
Sbjct: 391 KNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTV 450
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240
+HY C+VD++GRAG+L++A I +MP+ VWGALL+ CR+ ++ ++ + + +EL+
Sbjct: 451 EHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIA 510
Query: 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSI 292
+ + G + +SN ++ RW++A ++RD + + G+KK G SWIE+ +
Sbjct: 511 LEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+P R VV+WT + GY G EA+ +F++M + +P+ +V VLSAC + L
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMG-VKPDSYFIVQVLSACVHVGDLDS 230
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+++ Y+ ++ ++ V ++N+Y KCG + A VF+ + KD+++WST+I G A
Sbjct: 231 GEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
N ++ ++LF M+ + PD + + +S+C+ G +D G + +E +
Sbjct: 290 SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNL 348
Query: 181 QHYACVVDMYGRAGLLEEAEAFIREM 206
++DMY + G + +EM
Sbjct: 349 FMANALIDMYAKCGAMARGFEVFKEM 374
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 107/218 (49%), Gaps = 6/218 (2%)
Query: 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYV 64
++ + ++I G+ E + +F + K + T VL AC+ S+ G +
Sbjct: 75 NIFLYNSLINGFVNNHLFHETLDLFLSIRK-HGLYLHGFTFPLVLKACTRASSRKLGIDL 133
Query: 65 HSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
HS + ++ V+ + +++++Y G + A ++F+ + + +++W+ + SG +G
Sbjct: 134 HSLVVKCGFNHDVAAMT--SLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSG 191
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY 183
R+A+ LF M+ GV PD + ++SAC H G +D G + K M + E+ +
Sbjct: 192 RHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEM-EMQKNSFVR 250
Query: 184 ACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+V++Y + G +E+A + M +E + W ++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSM-VEKDIVTWSTMIQG 287
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 100 VFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159
+F+ + ++ ++++I+G N + L LF + +G++ TF ++ AC+
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 160 VDQGLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216
G+ L + +++ T ++ +Y +G L +A E+P + W
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTS----LLSIYSGSGRLNDAHKLFDEIP-DRSVVTWT 181
Query: 217 ALLNA 221
AL +
Sbjct: 182 ALFSG 186
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 214 bits (545), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 175/294 (59%), Gaps = 3/294 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M + +VSW T+I GY + GF + A+ VF++M + +++ V ACS + +L
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQM-VLYGIQLCGISMMPVFGACSLLPSLRL 615
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G+ H+Y + ++ L + ++I+MY K G + + +VFN L K SW+ +I G
Sbjct: 616 GREAHAY-ALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYG 674
Query: 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180
++G ++A++LF M G PDD+TF+ +++AC+H GL+ +GL M + + + P
Sbjct: 675 IHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNL 734
Query: 181 QHYACVVDMYGRAGLLEEAEAFI-REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
+HYACV+DM GRAG L++A + EM EA+ +W +LL++CRIH+N EM + + +L
Sbjct: 735 KHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLF 794
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293
+ + L+SN +AG +WED K+R + M L+K GCSWIE+N +F
Sbjct: 795 ELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVF 848
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 6/161 (3%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAE--PNEATLVNVLSACSSISA 57
MP+R++VSW +MI +++ GF EE+ + EM E+ + P+ ATLV VL C+
Sbjct: 248 MPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARERE 307
Query: 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS 117
+ G+ VH + + + L ++ NA+++MY KCG + A +F M K+++SW+T++
Sbjct: 308 IGLGKGVHGW-AVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVG 366
Query: 118 GLAMNGCGRQALQLFSLMIING--VFPDDVTFIALISACSH 156
G + G + M+ G V D+VT + + C H
Sbjct: 367 GFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEM-EKTKEAEPNEATLVNVLSACSSISALSFGQ 62
++VVSW TM+GG++ G V ++M ++ + +E T++N + C S L +
Sbjct: 356 KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK 415
Query: 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+H Y S + + + LV NA + Y KCG + A +VF+ + K + SW+ +I G A +
Sbjct: 416 ELHCY-SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQS 474
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACS 155
R +L M I+G+ PD T +L+SACS
Sbjct: 475 NDPRLSLDAHLQMKISGLLPDSFTVCSLLSACS 507
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
+ V SW +IGG+A+ ++ +M K P+ T+ ++LSACS + +L G+
Sbjct: 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKSLRLGKE 517
Query: 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123
VH +I R L V +V+++Y+ CG++ +F+ + K ++SW+TVI+G NG
Sbjct: 518 VHGFI-IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNG 576
Query: 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS-TVYEIVPQTQH 182
+AL +F M++ G+ ++ + + ACS L+ + +A + + ++
Sbjct: 577 FPDRALGVFRQMVLYGIQLCGISMMPVFGACS---LLPSLRLGREAHAYALKHLLEDDAF 633
Query: 183 YAC-VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225
AC ++DMY + G + ++ + E + W A++ IH
Sbjct: 634 IACSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMIMGYGIH 676
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
+ +++ W +I Y+ +E + F EM T + P+ T V+ AC+ +S +
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLA 120
G VH + + L VGNA+++ Y G V A+Q+F+++ ++++SW+++I +
Sbjct: 206 GLAVHGLV-VKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFS 264
Query: 121 MNGCGRQALQLFSLMII---NGVF-PDDVTFIALISACS-----------HGGLV----D 161
NG ++ L M+ +G F PD T + ++ C+ HG V D
Sbjct: 265 DNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLD 324
Query: 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNA 221
+ L+L A+ +DMY + G + A+ I +M W ++
Sbjct: 325 KELVLNNAL----------------MDMYSKCGCITNAQ-MIFKMNNNKNVVSWNTMVGG 367
Query: 222 CRIHRNDE-MFDPIRQELVNKKGVSVGTFALMS 253
+ FD +RQ L + V +++
Sbjct: 368 FSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 400
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 10/214 (4%)
Query: 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN-----VLSACSSISALSFGQYVHSY 67
I + E G +++ QE E+ + LV +L A + G+ +H
Sbjct: 50 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109
Query: 68 ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127
+S L +++ +I MY CG + VF+ L K++ W+ VIS + N +
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169
Query: 128 ALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLIL-FKAMSTVYEIVPQTQHYAC 185
L+ F MI + PD T+ +I AC+ G+ D G+ L + +V
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNA 227
Query: 186 VVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALL 219
+V YG G + +A MP E W +++
Sbjct: 228 LVSFYGTHGFVTDALQLFDIMP-ERNLVSWNSMI 260
>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2
SV=1
Length = 654
Score = 213 bits (543), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 175/290 (60%), Gaps = 3/290 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
M R VSWT MI GYAE+G +EA+++F M K+ E +P+ TL++++S C +L
Sbjct: 317 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGE-KPDLVTLLSLISGCGKFGSLET 375
Query: 61 GQYVHSYISTRYDLSVSN-LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119
G+++ + Y N ++ NA+I+MY KCG + A +F+ K +++W+T+I+G
Sbjct: 376 GKWIDARADI-YGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGY 434
Query: 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179
A+NG +AL+LFS MI P+ +TF+A++ AC+H G +++G F M VY I P
Sbjct: 435 ALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPG 494
Query: 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239
HY+C+VD+ GR G LEEA IR M + + +WGALLNAC+IHRN ++ + + L
Sbjct: 495 LDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLF 554
Query: 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289
N + + M+N +A A W+ +IR +++ +KK G S I+VN
Sbjct: 555 NLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVN 604
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 107/207 (51%), Gaps = 8/207 (3%)
Query: 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQY 63
R VVSW +M Y+ G +A ++ M + +E +P+ +T +N+ ++C + L+ G+
Sbjct: 219 RTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR-EEFKPDLSTFINLAASCQNPETLTQGRL 277
Query: 64 VHSY-ISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMN 122
+HS+ I D + + N I+MY K D A +F+++ + +SW+ +ISG A
Sbjct: 278 IHSHAIHLGTDQDIEAI--NTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEK 335
Query: 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH 182
G +AL LF MI +G PD VT ++LIS C G ++ G + A + +Y +
Sbjct: 336 GDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWI-DARADIYG-CKRDNV 393
Query: 183 YAC--VVDMYGRAGLLEEAEAFIREMP 207
C ++DMY + G + EA P
Sbjct: 394 MICNALIDMYSKCGSIHEARDIFDNTP 420
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF 60
MP+RD +W M+ G+ + G ++A S+F+EM + E P+ T++ ++ + S +L
Sbjct: 113 MPERDATTWNAMLSGFCQSGHTDKAFSLFREM-RLNEITPDSVTVMTLIQSASFEKSLKL 171
Query: 61 GQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTVISG 118
+ +H+ + R + V V N I+ Y KCGD+ A VF + D ++SW+++
Sbjct: 172 LEAMHA-VGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKA 230
Query: 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166
++ G A L+ LM+ PD TFI L ++C + + QG ++
Sbjct: 231 YSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLI 278
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH 65
V +W I R E++ +F+EM++ EPN T V AC+ ++ + + VH
Sbjct: 17 VNAWNLQIREAVNRNDPVESLLLFREMKRGG-FEPNNFTFPFVAKACARLADVGCCEMVH 75
Query: 66 SYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125
+++ + VG A ++M+VKC V A +VF + +D +W+ ++SG +G
Sbjct: 76 AHL-IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHT 134
Query: 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQH 182
+A LF M +N + PD VT + LI + S ++ L L +AM V + Q
Sbjct: 135 DKAFSLFREMRLNEITPDSVTVMTLIQSAS----FEKSLKLLEAMHAVGIRLGVDVQVTV 190
Query: 183 YACVVDMYGRAGLLEEAE 200
+ YG+ G L+ A+
Sbjct: 191 ANTWISTYGKCGDLDSAK 208
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 213 bits (542), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 184/283 (65%), Gaps = 5/283 (1%)
Query: 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA--EPNEATLVNVLSACSSIS-- 56
MP DVVSWTT+I G++++G +A+ VF EM + + A PNEAT V+VLS+C++
Sbjct: 178 MPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCANFDQG 237
Query: 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVI 116
+ G+ +H Y+ ++ ++ ++ +G A+++MY K GD+ +A+ +F+ + K + +W+ +I
Sbjct: 238 GIRLGKQIHGYVMSK-EIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAII 296
Query: 117 SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEI 176
S LA NG +QAL++F +M + V P+ +T +A+++AC+ LVD G+ LF ++ + Y+I
Sbjct: 297 SALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYKI 356
Query: 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQ 236
+P ++HY CVVD+ GRAGLL +A FI+ +P E + SV GALL AC+IH N E+ + + +
Sbjct: 357 IPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLGALLGACKIHENTELGNTVGK 416
Query: 237 ELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279
+L+ + G + +S A W +A K+R + G++K
Sbjct: 417 QLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAGIRK 459
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 132/278 (47%), Gaps = 44/278 (15%)
Query: 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVH--- 65
+ T+I Y G + ++++F M + +PN T +++ A S ++S+G +H
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLAS-HVQPNNLTFPSLIKAACSSFSVSYGVALHGQA 112
Query: 66 --------SYISTRY--------DLSVSNLVGNAVINMYV-----------KCGDVGIAI 98
++ T + DL S + + ++N V + G++ A
Sbjct: 113 LKRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAF 172
Query: 99 QVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACS 155
+ F + D++SW+TVI+G + G +AL +F MI N + P++ TF++++S+C+
Sbjct: 173 EYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCA 232
Query: 156 HGGLVDQGLILFKAMSTVY----EIVPQTQHYACVVDMYGRAGLLEEAEAF---IREMPI 208
+ DQG I Y EI+ T ++DMYG+AG LE A IR+ +
Sbjct: 233 N---FDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKV 289
Query: 209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246
A ++ AL + R + EMF+ ++ V+ G+++
Sbjct: 290 CAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITL 327
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165
+K ++T+I G + +L LF+ M+ + V P+++TF +LI A V G+
Sbjct: 48 WKTKCVYNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVA 107
Query: 166 LF-KAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRI 224
L +A+ + P Q V YG G LE + ++ + +LL+AC
Sbjct: 108 LHGQALKRGFLWDPFVQ--TSFVRFYGEVGDLESSRKMFDDI-LNPCVVACNSLLDACG- 163
Query: 225 HRNDEM 230
RN EM
Sbjct: 164 -RNGEM 168
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,683,157
Number of Sequences: 539616
Number of extensions: 4094027
Number of successful extensions: 13022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 8908
Number of HSP's gapped (non-prelim): 1816
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)