Query 036775
Match_columns 293
No_of_seqs 408 out of 1288
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 05:22:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1E-54 2.2E-59 380.5 32.7 291 1-293 285-575 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-51 2.9E-56 365.2 30.6 282 4-288 470-761 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2E-51 4.3E-56 364.1 30.9 288 1-291 432-729 (1060)
4 PLN03081 pentatricopeptide (PP 100.0 2.8E-51 6.1E-56 358.9 28.9 286 1-290 184-471 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.2E-50 6.9E-55 359.8 31.3 289 1-293 450-738 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-49 2.4E-54 356.4 28.6 287 1-291 248-599 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.5E-22 3.2E-27 167.3 28.8 276 4-284 67-356 (389)
8 PRK11788 tetratricopeptide rep 99.9 4.8E-21 1E-25 158.3 26.6 265 13-285 42-319 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 5.7E-20 1.2E-24 167.2 31.8 264 5-275 532-799 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-19 2.4E-24 165.2 31.8 262 6-276 601-867 (899)
11 PRK15174 Vi polysaccharide exp 99.8 3.3E-17 7.1E-22 142.6 30.8 256 12-274 82-346 (656)
12 PRK15174 Vi polysaccharide exp 99.8 1.7E-16 3.7E-21 138.1 31.9 263 5-275 109-381 (656)
13 KOG4626 O-linked N-acetylgluco 99.8 3.4E-18 7.3E-23 139.1 19.5 265 7-282 219-490 (966)
14 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-16 5.6E-21 137.1 28.8 251 20-275 308-571 (615)
15 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-15 2.4E-20 133.1 31.6 162 111-275 333-496 (615)
16 PF13429 TPR_15: Tetratricopep 99.8 3.6E-18 7.7E-23 134.5 10.5 257 11-273 13-275 (280)
17 KOG4626 O-linked N-acetylgluco 99.7 1.2E-16 2.7E-21 130.2 16.9 271 6-289 116-429 (966)
18 PRK11447 cellulose synthase su 99.7 3.5E-14 7.5E-19 131.7 32.9 262 5-273 302-664 (1157)
19 PRK09782 bacteriophage N4 rece 99.7 7.1E-14 1.5E-18 125.3 29.5 258 5-273 476-738 (987)
20 PRK11447 cellulose synthase su 99.7 8.7E-14 1.9E-18 129.1 31.0 261 9-280 464-746 (1157)
21 PRK10049 pgaA outer membrane p 99.7 5.2E-13 1.1E-17 118.9 31.8 268 6-281 83-426 (765)
22 PRK10747 putative protoheme IX 99.7 2.6E-13 5.7E-18 111.8 27.0 246 19-274 97-356 (398)
23 PRK09782 bacteriophage N4 rece 99.7 4.1E-13 8.8E-18 120.5 28.8 231 41-281 476-710 (987)
24 KOG1126 DNA-binding cell divis 99.6 4.7E-14 1E-18 116.0 19.9 255 21-282 334-625 (638)
25 PRK10049 pgaA outer membrane p 99.6 2.9E-12 6.3E-17 114.1 30.9 267 5-274 116-455 (765)
26 TIGR00540 hemY_coli hemY prote 99.6 1.2E-12 2.6E-17 108.5 26.4 259 18-282 96-371 (409)
27 PF13429 TPR_15: Tetratricopep 99.6 2.4E-15 5.1E-20 118.5 8.4 230 40-274 7-242 (280)
28 PRK10747 putative protoheme IX 99.6 4.8E-12 1E-16 104.4 27.5 254 9-274 121-389 (398)
29 PRK12370 invasion protein regu 99.6 3.1E-12 6.7E-17 110.0 26.9 262 4-276 254-536 (553)
30 TIGR02521 type_IV_pilW type IV 99.6 1.5E-12 3.3E-17 99.7 22.4 198 76-274 29-231 (234)
31 KOG4422 Uncharacterized conser 99.6 2.6E-12 5.7E-17 101.0 22.4 115 5-125 206-328 (625)
32 KOG1126 DNA-binding cell divis 99.6 7.3E-14 1.6E-18 114.9 14.5 220 57-284 334-593 (638)
33 PF13041 PPR_2: PPR repeat fam 99.6 1E-14 2.2E-19 82.5 6.5 50 4-54 1-50 (50)
34 TIGR02521 type_IV_pilW type IV 99.6 4.3E-12 9.4E-17 97.1 23.4 196 41-240 30-231 (234)
35 PRK14574 hmsH outer membrane p 99.6 3.2E-11 6.9E-16 106.5 31.3 262 13-281 109-483 (822)
36 KOG4422 Uncharacterized conser 99.5 7.2E-12 1.6E-16 98.6 22.5 270 6-282 116-434 (625)
37 PF13041 PPR_2: PPR repeat fam 99.5 2E-14 4.4E-19 81.2 6.2 50 107-156 1-50 (50)
38 KOG1840 Kinesin light chain [C 99.5 8.3E-12 1.8E-16 103.3 23.8 232 42-273 199-477 (508)
39 KOG1155 Anaphase-promoting com 99.5 1.2E-11 2.7E-16 98.0 23.4 164 108-274 329-494 (559)
40 KOG1173 Anaphase-promoting com 99.5 4.8E-12 1E-16 102.6 21.3 270 5-283 243-524 (611)
41 TIGR00540 hemY_coli hemY prote 99.5 3E-11 6.5E-16 100.2 26.9 258 9-274 121-398 (409)
42 COG2956 Predicted N-acetylgluc 99.5 5.7E-11 1.2E-15 90.3 24.6 263 16-282 45-354 (389)
43 KOG1155 Anaphase-promoting com 99.5 2.6E-11 5.6E-16 96.3 23.0 248 16-271 272-532 (559)
44 KOG2003 TPR repeat-containing 99.5 3.3E-11 7.1E-16 95.8 23.6 243 14-261 427-709 (840)
45 COG2956 Predicted N-acetylgluc 99.5 2.5E-10 5.5E-15 86.8 25.2 195 8-206 71-275 (389)
46 COG3071 HemY Uncharacterized e 99.5 4.2E-10 9E-15 87.9 26.8 264 12-281 88-396 (400)
47 PRK12370 invasion protein regu 99.5 4.9E-11 1.1E-15 102.6 22.8 228 39-274 253-501 (553)
48 PRK14574 hmsH outer membrane p 99.5 5.3E-10 1.2E-14 98.9 29.5 259 11-274 73-395 (822)
49 KOG1129 TPR repeat-containing 99.4 1.6E-11 3.5E-16 93.4 17.0 223 46-274 227-457 (478)
50 KOG4318 Bicoid mRNA stability 99.4 7.4E-12 1.6E-16 106.4 16.4 241 27-285 11-275 (1088)
51 KOG2076 RNA polymerase III tra 99.4 5.3E-10 1.2E-14 95.5 26.7 95 179-273 413-510 (895)
52 KOG0495 HAT repeat protein [RN 99.4 3.2E-10 7E-15 93.9 24.6 270 8-289 586-892 (913)
53 KOG1129 TPR repeat-containing 99.4 2E-11 4.3E-16 92.9 16.0 228 10-244 227-461 (478)
54 KOG0495 HAT repeat protein [RN 99.4 1.8E-09 4E-14 89.5 27.1 270 6-285 516-790 (913)
55 PRK11189 lipoprotein NlpI; Pro 99.4 2.2E-09 4.7E-14 85.1 25.1 220 21-249 41-273 (296)
56 PRK11189 lipoprotein NlpI; Pro 99.3 8.7E-10 1.9E-14 87.3 21.7 213 56-276 40-266 (296)
57 KOG2076 RNA polymerase III tra 99.3 6.9E-09 1.5E-13 89.0 27.6 265 6-274 139-477 (895)
58 COG3071 HemY Uncharacterized e 99.3 8.4E-09 1.8E-13 80.8 25.5 227 7-242 119-391 (400)
59 KOG0547 Translocase of outer m 99.3 9.5E-10 2.1E-14 88.2 20.2 215 52-272 336-563 (606)
60 KOG4318 Bicoid mRNA stability 99.3 2.1E-10 4.5E-15 97.9 17.2 239 3-264 22-289 (1088)
61 COG3063 PilF Tfp pilus assembl 99.3 3.6E-10 7.8E-15 82.1 15.1 194 80-274 37-235 (250)
62 KOG2002 TPR-containing nuclear 99.3 7.7E-10 1.7E-14 95.3 19.4 272 4-281 450-749 (1018)
63 PF12569 NARP1: NMDA receptor- 99.3 9.2E-09 2E-13 86.4 24.5 260 13-279 11-295 (517)
64 KOG1915 Cell cycle control pro 99.2 2.8E-08 6E-13 79.8 24.7 265 3-273 171-498 (677)
65 KOG2002 TPR-containing nuclear 99.2 7.7E-09 1.7E-13 89.4 22.7 266 4-274 268-558 (1018)
66 COG3063 PilF Tfp pilus assembl 99.2 2.5E-08 5.4E-13 72.7 21.8 195 47-245 40-240 (250)
67 KOG0547 Translocase of outer m 99.2 1.7E-08 3.8E-13 81.2 22.8 259 11-280 120-494 (606)
68 PF04733 Coatomer_E: Coatomer 99.2 1.3E-09 2.9E-14 85.3 16.4 146 119-274 112-264 (290)
69 PF04733 Coatomer_E: Coatomer 99.2 5E-10 1.1E-14 87.7 13.7 227 7-246 36-270 (290)
70 KOG1173 Anaphase-promoting com 99.2 1.4E-08 3.1E-13 82.9 22.0 243 4-252 276-529 (611)
71 KOG2003 TPR repeat-containing 99.2 5.7E-09 1.2E-13 83.3 18.9 158 122-284 503-697 (840)
72 KOG1070 rRNA processing protei 99.2 1.1E-08 2.5E-13 91.4 21.1 205 73-281 1453-1669(1710)
73 cd05804 StaR_like StaR_like; a 99.1 3.2E-07 7E-12 75.1 27.3 255 15-274 52-335 (355)
74 KOG1174 Anaphase-promoting com 99.1 1.3E-07 2.9E-12 74.7 22.9 186 85-274 307-499 (564)
75 cd05804 StaR_like StaR_like; a 99.1 8.8E-07 1.9E-11 72.5 29.2 267 5-275 5-293 (355)
76 KOG4340 Uncharacterized conser 99.1 1.1E-07 2.3E-12 72.2 21.1 255 9-271 13-335 (459)
77 KOG1174 Anaphase-promoting com 99.1 2.3E-07 5E-12 73.4 21.9 250 19-274 209-466 (564)
78 KOG1840 Kinesin light chain [C 99.1 1.2E-07 2.6E-12 79.1 21.4 127 113-239 329-477 (508)
79 KOG1125 TPR repeat-containing 99.0 1.3E-08 2.9E-13 83.3 14.7 219 52-274 295-526 (579)
80 PF12569 NARP1: NMDA receptor- 99.0 5.8E-07 1.3E-11 75.8 24.7 258 8-274 40-333 (517)
81 KOG1915 Cell cycle control pro 99.0 1.2E-06 2.6E-11 70.7 24.7 255 18-279 85-354 (677)
82 PF12854 PPR_1: PPR repeat 99.0 8.5E-10 1.8E-14 56.1 4.0 32 175-206 2-33 (34)
83 PF12854 PPR_1: PPR repeat 99.0 1.4E-09 3E-14 55.3 4.2 33 73-105 2-34 (34)
84 PLN02789 farnesyltranstransfer 98.9 1.4E-06 3E-11 69.4 22.4 223 56-285 51-310 (320)
85 TIGR03302 OM_YfiO outer membra 98.9 4.3E-07 9.3E-12 69.8 18.5 184 5-206 32-229 (235)
86 TIGR03302 OM_YfiO outer membra 98.9 1.8E-07 3.9E-12 71.9 16.3 183 75-275 30-232 (235)
87 PLN02789 farnesyltranstransfer 98.9 5.9E-06 1.3E-10 65.9 25.0 209 8-224 39-267 (320)
88 KOG1070 rRNA processing protei 98.9 1.1E-06 2.5E-11 79.2 22.5 223 41-266 1457-1691(1710)
89 PRK14720 transcript cleavage f 98.9 1.4E-06 3E-11 77.4 22.3 229 3-257 28-268 (906)
90 KOG1125 TPR repeat-containing 98.9 4.6E-07 9.9E-12 74.6 18.0 248 15-268 294-564 (579)
91 KOG3081 Vesicle coat complex C 98.8 2E-06 4.3E-11 64.4 18.7 244 13-274 15-270 (299)
92 KOG1128 Uncharacterized conser 98.8 3E-07 6.5E-12 77.6 16.1 209 47-274 403-615 (777)
93 KOG0624 dsRNA-activated protei 98.8 6.7E-06 1.5E-10 63.9 21.8 189 12-211 44-255 (504)
94 KOG2047 mRNA splicing factor [ 98.8 1.6E-05 3.5E-10 66.7 25.3 261 7-276 103-507 (835)
95 COG5010 TadD Flp pilus assembl 98.8 1E-06 2.3E-11 65.7 16.7 151 82-235 70-225 (257)
96 KOG4162 Predicted calmodulin-b 98.8 7.8E-06 1.7E-10 69.8 23.5 128 146-275 652-783 (799)
97 COG5010 TadD Flp pilus assembl 98.8 3.9E-06 8.5E-11 62.7 19.2 160 41-206 66-228 (257)
98 PRK15179 Vi polysaccharide bio 98.8 5.4E-06 1.2E-10 72.7 23.1 132 109-243 86-219 (694)
99 PRK10370 formate-dependent nit 98.8 1.5E-06 3.2E-11 64.5 16.6 154 85-249 23-181 (198)
100 PRK10370 formate-dependent nit 98.8 3.2E-06 7E-11 62.7 17.7 115 158-274 53-172 (198)
101 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 1.2E-06 2.7E-11 71.1 16.2 127 81-210 172-298 (395)
102 PRK15359 type III secretion sy 98.7 6E-07 1.3E-11 63.1 12.7 26 146-171 60-85 (144)
103 PRK15359 type III secretion sy 98.7 4.3E-07 9.3E-12 63.8 12.0 89 186-274 30-120 (144)
104 PRK15179 Vi polysaccharide bio 98.7 3.8E-06 8.3E-11 73.6 20.0 144 38-186 82-228 (694)
105 KOG1156 N-terminal acetyltrans 98.7 5.4E-05 1.2E-09 63.7 25.2 92 185-276 376-469 (700)
106 PRK04841 transcriptional regul 98.7 5.2E-05 1.1E-09 70.1 26.7 262 14-276 460-761 (903)
107 KOG1128 Uncharacterized conser 98.7 5.9E-06 1.3E-10 70.1 18.3 189 73-276 393-583 (777)
108 TIGR00756 PPR pentatricopeptid 98.7 5.6E-08 1.2E-12 50.1 4.4 34 110-143 1-34 (35)
109 KOG1156 N-terminal acetyltrans 98.6 5.3E-05 1.1E-09 63.7 22.6 248 4-257 6-264 (700)
110 TIGR00756 PPR pentatricopeptid 98.6 8.8E-08 1.9E-12 49.4 4.3 35 247-281 1-35 (35)
111 PF13812 PPR_3: Pentatricopept 98.6 9.3E-08 2E-12 48.9 4.3 33 110-142 2-34 (34)
112 KOG3081 Vesicle coat complex C 98.6 3.5E-05 7.6E-10 57.9 19.1 175 63-245 94-275 (299)
113 PF13812 PPR_3: Pentatricopept 98.6 9.4E-08 2E-12 48.9 4.2 34 6-40 1-34 (34)
114 KOG2047 mRNA splicing factor [ 98.6 0.00027 5.9E-09 59.7 25.2 262 7-271 388-683 (835)
115 KOG1914 mRNA cleavage and poly 98.5 0.00024 5.3E-09 58.8 24.0 120 160-281 347-470 (656)
116 KOG2376 Signal recognition par 98.5 4.1E-05 9E-10 63.7 19.3 219 13-246 19-258 (652)
117 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 7.2E-06 1.6E-10 66.8 14.8 124 145-273 170-295 (395)
118 PRK04841 transcriptional regul 98.5 0.00027 5.7E-09 65.5 26.8 261 12-274 415-719 (903)
119 KOG2376 Signal recognition par 98.5 2.7E-05 5.8E-10 64.7 17.6 230 45-290 15-267 (652)
120 KOG3785 Uncharacterized conser 98.5 9.9E-05 2.2E-09 57.9 19.6 126 150-282 365-495 (557)
121 KOG4162 Predicted calmodulin-b 98.5 0.00045 9.7E-09 59.5 24.8 168 5-174 322-543 (799)
122 TIGR02552 LcrH_SycD type III s 98.5 3.8E-06 8.2E-11 58.5 11.0 91 184-274 21-113 (135)
123 KOG0985 Vesicle coat protein c 98.5 0.00016 3.4E-09 64.2 22.4 212 5-238 983-1220(1666)
124 KOG3616 Selective LIM binding 98.5 1.8E-05 3.8E-10 67.7 16.3 26 247-272 883-908 (1636)
125 COG4783 Putative Zn-dependent 98.5 2.7E-05 5.8E-10 63.4 16.4 161 3-170 271-434 (484)
126 COG4783 Putative Zn-dependent 98.4 4.4E-05 9.4E-10 62.2 17.2 118 154-273 316-435 (484)
127 KOG3060 Uncharacterized conser 98.4 0.00025 5.3E-09 53.1 19.5 161 82-245 56-224 (289)
128 KOG4340 Uncharacterized conser 98.4 2.6E-05 5.7E-10 59.6 14.5 199 78-282 10-214 (459)
129 PF09976 TPR_21: Tetratricopep 98.4 2.8E-05 6E-10 54.8 14.0 125 8-134 14-143 (145)
130 TIGR02552 LcrH_SycD type III s 98.4 1.1E-05 2.4E-10 56.1 11.9 94 43-138 18-114 (135)
131 KOG3616 Selective LIM binding 98.4 6.2E-05 1.3E-09 64.6 17.5 166 50-235 740-905 (1636)
132 PRK14720 transcript cleavage f 98.4 7.9E-05 1.7E-09 66.6 18.9 217 39-275 28-252 (906)
133 PF09976 TPR_21: Tetratricopep 98.3 3.3E-05 7.1E-10 54.5 13.2 112 157-271 24-143 (145)
134 KOG3060 Uncharacterized conser 98.3 0.00011 2.4E-09 54.9 16.0 181 91-275 25-220 (289)
135 PF01535 PPR: PPR repeat; Int 98.3 8.5E-07 1.8E-11 44.2 3.7 30 111-140 2-31 (31)
136 PF14938 SNAP: Soluble NSF att 98.3 0.00038 8.2E-09 55.0 20.2 132 115-248 120-270 (282)
137 KOG3617 WD40 and TPR repeat-co 98.3 8.8E-05 1.9E-09 64.4 17.2 164 53-239 811-994 (1416)
138 KOG0548 Molecular co-chaperone 98.3 0.00034 7.3E-09 57.8 19.9 156 116-274 231-420 (539)
139 PF01535 PPR: PPR repeat; Int 98.3 1.3E-06 2.9E-11 43.4 3.5 31 247-277 1-31 (31)
140 KOG0624 dsRNA-activated protei 98.3 0.00089 1.9E-08 52.5 20.1 226 15-247 115-376 (504)
141 KOG3617 WD40 and TPR repeat-co 98.2 0.00014 3E-09 63.2 16.7 242 5-273 725-994 (1416)
142 PF05843 Suf: Suppressor of fo 98.2 4.6E-05 1E-09 59.9 13.3 142 6-152 1-148 (280)
143 PF08579 RPM2: Mitochondrial r 98.2 2.1E-05 4.5E-10 51.1 9.1 80 112-192 28-116 (120)
144 PF10037 MRP-S27: Mitochondria 98.2 5.1E-05 1.1E-09 62.3 13.7 120 73-193 61-186 (429)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 4.1E-05 8.9E-10 51.8 11.0 21 186-206 45-65 (119)
146 PRK15363 pathogenicity island 98.2 3.1E-05 6.8E-10 54.0 9.9 94 181-274 36-131 (157)
147 cd00189 TPR Tetratricopeptide 98.2 2.2E-05 4.8E-10 50.3 9.0 92 183-274 3-96 (100)
148 KOG3785 Uncharacterized conser 98.2 0.0012 2.6E-08 52.1 19.3 192 53-256 33-229 (557)
149 cd00189 TPR Tetratricopeptide 98.2 5.5E-05 1.2E-09 48.4 10.7 94 8-105 2-95 (100)
150 KOG1127 TPR repeat-containing 98.1 0.00085 1.8E-08 59.7 19.5 176 94-272 474-656 (1238)
151 PRK02603 photosystem I assembl 98.1 0.0002 4.3E-09 52.1 13.8 111 45-159 38-166 (172)
152 PF12895 Apc3: Anaphase-promot 98.1 7.3E-06 1.6E-10 51.8 5.5 49 157-205 2-50 (84)
153 PF12895 Apc3: Anaphase-promot 98.1 1.5E-05 3.3E-10 50.3 6.8 82 19-103 2-83 (84)
154 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00017 3.8E-09 48.7 12.4 90 83-172 7-104 (119)
155 KOG2053 Mitochondrial inherita 98.1 0.0059 1.3E-07 53.9 25.0 223 16-245 19-259 (932)
156 KOG0548 Molecular co-chaperone 98.1 0.0031 6.7E-08 52.4 20.0 232 9-252 227-466 (539)
157 KOG0985 Vesicle coat protein c 98.1 0.0033 7.2E-08 56.3 21.3 236 6-272 1104-1367(1666)
158 PF05843 Suf: Suppressor of fo 98.0 0.0003 6.5E-09 55.4 13.6 124 80-206 3-133 (280)
159 CHL00033 ycf3 photosystem I as 98.0 0.00048 1E-08 49.9 13.7 114 22-135 15-139 (168)
160 PF14938 SNAP: Soluble NSF att 98.0 0.0026 5.6E-08 50.3 18.5 127 146-272 116-263 (282)
161 PLN03088 SGT1, suppressor of 98.0 0.00025 5.3E-09 57.9 12.9 85 119-206 12-96 (356)
162 KOG1127 TPR repeat-containing 98.0 0.0014 3E-08 58.4 17.6 125 80-206 494-622 (1238)
163 PF06239 ECSIT: Evolutionarily 98.0 0.00012 2.6E-09 53.7 9.6 96 99-195 35-153 (228)
164 PF08579 RPM2: Mitochondrial r 98.0 0.00025 5.3E-09 46.2 9.9 79 10-90 29-116 (120)
165 PRK15363 pathogenicity island 98.0 0.0005 1.1E-08 48.1 12.2 93 81-174 38-133 (157)
166 PRK02603 photosystem I assembl 97.9 0.00047 1E-08 50.1 12.7 83 112-196 38-122 (172)
167 KOG0553 TPR repeat-containing 97.9 4.5E-05 9.7E-10 58.4 7.1 105 154-260 91-197 (304)
168 PF04840 Vps16_C: Vps16, C-ter 97.9 0.007 1.5E-07 48.4 23.5 106 146-268 179-284 (319)
169 PRK10153 DNA-binding transcrip 97.9 0.00086 1.9E-08 57.4 15.4 63 108-172 419-481 (517)
170 CHL00033 ycf3 photosystem I as 97.9 0.00058 1.2E-08 49.5 11.7 79 111-191 37-117 (168)
171 PF13432 TPR_16: Tetratricopep 97.8 7E-05 1.5E-09 44.6 5.8 56 219-274 4-59 (65)
172 PF12688 TPR_5: Tetratrico pep 97.8 0.0011 2.4E-08 44.6 12.0 104 13-119 8-116 (120)
173 PF10037 MRP-S27: Mitochondria 97.8 0.00045 9.7E-09 56.9 11.9 96 110-206 67-164 (429)
174 PF12688 TPR_5: Tetratrico pep 97.8 0.0019 4.1E-08 43.5 12.6 108 115-223 7-117 (120)
175 KOG0553 TPR repeat-containing 97.8 0.00042 9.1E-09 53.2 10.4 99 119-221 91-191 (304)
176 PLN03088 SGT1, suppressor of 97.8 0.00073 1.6E-08 55.2 12.5 103 151-255 9-113 (356)
177 PF13414 TPR_11: TPR repeat; P 97.8 0.00013 2.8E-09 44.0 6.3 64 211-274 2-66 (69)
178 KOG1914 mRNA cleavage and poly 97.8 0.0073 1.6E-07 50.4 17.8 182 22-206 347-536 (656)
179 PF14559 TPR_19: Tetratricopep 97.8 0.00015 3.3E-09 43.5 6.6 55 156-212 3-58 (68)
180 PRK10866 outer membrane biogen 97.7 0.012 2.7E-07 45.3 20.0 172 45-238 35-238 (243)
181 PRK10866 outer membrane biogen 97.7 0.014 3E-07 45.0 18.8 174 83-273 37-239 (243)
182 PF03704 BTAD: Bacterial trans 97.7 0.0028 6.2E-08 44.6 12.9 65 82-146 66-138 (146)
183 PRK10153 DNA-binding transcrip 97.7 0.003 6.5E-08 54.1 15.0 141 73-216 332-490 (517)
184 KOG0550 Molecular chaperone (D 97.7 0.0037 8E-08 50.4 14.1 257 14-281 57-356 (486)
185 PF12921 ATP13: Mitochondrial 97.6 0.00081 1.8E-08 45.7 9.1 87 5-91 1-101 (126)
186 KOG2053 Mitochondrial inherita 97.6 0.04 8.6E-07 49.0 21.3 217 54-276 21-256 (932)
187 COG4700 Uncharacterized protei 97.6 0.011 2.4E-07 42.5 17.2 132 72-206 83-219 (251)
188 PF06239 ECSIT: Evolutionarily 97.6 0.00091 2E-08 49.2 9.7 87 4-92 45-152 (228)
189 COG4235 Cytochrome c biogenesi 97.6 0.0027 5.9E-08 49.0 11.9 100 177-276 153-257 (287)
190 PF12921 ATP13: Mitochondrial 97.6 0.0014 3.1E-08 44.5 9.4 81 110-190 3-98 (126)
191 PF14559 TPR_19: Tetratricopep 97.6 0.00013 2.7E-09 43.9 3.9 52 223-274 2-53 (68)
192 PF04840 Vps16_C: Vps16, C-ter 97.6 0.028 6.1E-07 45.1 20.4 84 182-271 179-262 (319)
193 PF13432 TPR_16: Tetratricopep 97.5 0.00053 1.2E-08 40.7 6.3 53 152-206 5-57 (65)
194 PF13281 DUF4071: Domain of un 97.5 0.035 7.6E-07 45.1 18.3 29 246-274 305-333 (374)
195 PF13525 YfiO: Outer membrane 97.5 0.013 2.7E-07 43.9 14.5 49 218-266 147-198 (203)
196 PRK15331 chaperone protein Sic 97.5 0.0019 4E-08 45.6 9.0 84 190-273 47-132 (165)
197 PF09205 DUF1955: Domain of un 97.4 0.014 2.9E-07 39.4 12.2 66 213-278 87-152 (161)
198 PF03704 BTAD: Bacterial trans 97.4 0.00072 1.6E-08 47.7 6.9 70 214-283 64-138 (146)
199 PF13414 TPR_11: TPR repeat; P 97.4 0.0017 3.7E-08 39.0 7.5 64 5-70 2-66 (69)
200 COG3898 Uncharacterized membra 97.4 0.053 1.1E-06 43.8 21.1 241 18-274 132-391 (531)
201 PRK10803 tol-pal system protei 97.4 0.0039 8.5E-08 48.4 10.7 58 81-138 183-246 (263)
202 PF13371 TPR_9: Tetratricopept 97.3 0.00094 2E-08 40.7 5.9 56 220-275 3-58 (73)
203 KOG1130 Predicted G-alpha GTPa 97.3 0.004 8.6E-08 50.3 10.3 260 15-274 26-343 (639)
204 PRK10803 tol-pal system protei 97.3 0.0065 1.4E-07 47.2 11.3 97 146-245 145-250 (263)
205 KOG1538 Uncharacterized conser 97.3 0.096 2.1E-06 45.2 18.7 181 9-213 601-807 (1081)
206 KOG2796 Uncharacterized conser 97.3 0.047 1E-06 41.6 16.0 134 110-244 178-318 (366)
207 KOG2796 Uncharacterized conser 97.3 0.015 3.3E-07 44.2 12.4 141 22-172 165-314 (366)
208 PF13281 DUF4071: Domain of un 97.2 0.079 1.7E-06 43.2 19.6 161 82-245 145-338 (374)
209 COG3898 Uncharacterized membra 97.2 0.077 1.7E-06 42.9 23.8 251 9-272 85-355 (531)
210 COG4235 Cytochrome c biogenesi 97.2 0.03 6.5E-07 43.5 13.5 100 143-244 155-259 (287)
211 COG4700 Uncharacterized protei 97.2 0.05 1.1E-06 39.3 16.5 100 142-242 87-190 (251)
212 PF13525 YfiO: Outer membrane 97.1 0.065 1.4E-06 40.1 19.3 179 5-199 4-197 (203)
213 PF13424 TPR_12: Tetratricopep 97.1 0.0022 4.7E-08 39.6 5.7 23 81-103 8-30 (78)
214 PF10300 DUF3808: Protein of u 97.1 0.087 1.9E-06 44.9 16.7 158 114-274 193-375 (468)
215 PF13424 TPR_12: Tetratricopep 97.0 0.0046 9.9E-08 38.2 6.7 65 6-70 5-74 (78)
216 KOG2280 Vacuolar assembly/sort 97.0 0.2 4.3E-06 44.0 17.9 250 5-270 506-794 (829)
217 PF13371 TPR_9: Tetratricopept 97.0 0.0058 1.3E-07 37.1 6.9 52 119-171 5-56 (73)
218 KOG2041 WD40 repeat protein [G 97.0 0.086 1.9E-06 45.9 15.3 55 143-207 851-905 (1189)
219 KOG1538 Uncharacterized conser 96.9 0.14 3E-06 44.3 16.0 175 13-207 639-831 (1081)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.2 4.3E-06 41.5 17.6 129 110-242 398-532 (660)
221 PF10300 DUF3808: Protein of u 96.9 0.14 3E-06 43.7 16.2 178 22-206 173-373 (468)
222 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.099 2.2E-06 43.1 14.0 127 43-172 398-530 (660)
223 PF04053 Coatomer_WDAD: Coatom 96.8 0.092 2E-06 44.2 14.5 166 14-212 269-434 (443)
224 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.11 2.3E-06 43.2 13.7 64 4-70 73-140 (453)
225 PF07079 DUF1347: Protein of u 96.7 0.3 6.5E-06 40.5 21.6 257 16-281 16-331 (549)
226 KOG3941 Intermediate in Toll s 96.7 0.02 4.4E-07 44.0 8.6 96 99-195 55-173 (406)
227 PRK15331 chaperone protein Sic 96.6 0.047 1E-06 38.7 9.8 90 47-138 42-134 (165)
228 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.045 9.7E-07 45.3 10.9 66 39-107 72-141 (453)
229 smart00299 CLH Clathrin heavy 96.6 0.14 3E-06 35.7 15.3 127 112-258 10-137 (140)
230 PF13431 TPR_17: Tetratricopep 96.5 0.0031 6.6E-08 31.8 2.5 33 235-267 2-34 (34)
231 KOG2280 Vacuolar assembly/sort 96.4 0.059 1.3E-06 47.0 10.5 119 72-206 678-796 (829)
232 COG1729 Uncharacterized protei 96.4 0.13 2.8E-06 39.6 11.4 98 8-106 144-243 (262)
233 PF13428 TPR_14: Tetratricopep 96.3 0.011 2.3E-07 31.8 4.0 38 215-252 4-41 (44)
234 KOG0543 FKBP-type peptidyl-pro 96.3 0.12 2.5E-06 42.1 11.2 118 85-206 215-352 (397)
235 KOG3941 Intermediate in Toll s 96.2 0.078 1.7E-06 41.0 9.6 101 3-105 64-186 (406)
236 COG1729 Uncharacterized protei 96.2 0.064 1.4E-06 41.2 9.1 96 147-245 145-248 (262)
237 PF10602 RPN7: 26S proteasome 96.1 0.2 4.3E-06 36.5 11.0 58 80-137 38-101 (177)
238 smart00299 CLH Clathrin heavy 96.0 0.31 6.7E-06 33.9 14.8 84 47-135 12-95 (140)
239 KOG2114 Vacuolar assembly/sort 96.0 1.2 2.5E-05 40.1 17.6 171 12-207 340-517 (933)
240 KOG0543 FKBP-type peptidyl-pro 95.9 0.19 4.2E-06 40.8 10.9 94 181-274 258-354 (397)
241 KOG2041 WD40 repeat protein [G 95.9 1.1 2.4E-05 39.5 18.1 221 38-274 688-951 (1189)
242 PF04053 Coatomer_WDAD: Coatom 95.9 0.73 1.6E-05 39.0 14.8 135 6-171 295-429 (443)
243 PF00637 Clathrin: Region in C 95.9 0.0016 3.5E-08 45.7 -0.7 129 114-261 12-140 (143)
244 PF13929 mRNA_stabil: mRNA sta 95.8 0.55 1.2E-05 36.7 12.7 70 63-132 187-261 (292)
245 KOG4555 TPR repeat-containing 95.8 0.34 7.3E-06 32.9 10.5 52 120-172 54-105 (175)
246 COG3118 Thioredoxin domain-con 95.8 0.68 1.5E-05 36.2 14.9 141 118-260 143-286 (304)
247 PF13170 DUF4003: Protein of u 95.7 0.52 1.1E-05 37.5 12.7 61 126-187 160-224 (297)
248 COG3629 DnrI DNA-binding trans 95.7 0.16 3.4E-06 39.7 9.4 80 109-189 153-236 (280)
249 PF13512 TPR_18: Tetratricopep 95.7 0.37 8.1E-06 33.4 10.2 25 114-138 52-76 (142)
250 KOG2610 Uncharacterized conser 95.6 0.47 1E-05 37.9 11.5 149 18-170 115-273 (491)
251 KOG1941 Acetylcholine receptor 95.5 0.85 1.8E-05 36.9 12.9 200 7-206 44-272 (518)
252 COG4105 ComL DNA uptake lipopr 95.5 0.79 1.7E-05 35.1 17.2 67 88-154 44-116 (254)
253 PF13428 TPR_14: Tetratricopep 95.5 0.069 1.5E-06 28.6 5.2 29 7-35 2-30 (44)
254 KOG1585 Protein required for f 95.5 0.83 1.8E-05 34.8 16.2 201 44-270 33-251 (308)
255 KOG1941 Acetylcholine receptor 95.4 0.85 1.8E-05 36.9 12.5 44 18-61 18-62 (518)
256 PF13512 TPR_18: Tetratricopep 95.4 0.56 1.2E-05 32.5 11.1 52 155-206 21-73 (142)
257 PF04184 ST7: ST7 protein; In 95.4 1.4 3.1E-05 37.2 15.2 55 186-240 265-323 (539)
258 KOG1130 Predicted G-alpha GTPa 95.4 0.36 7.7E-06 39.6 10.5 233 7-240 56-343 (639)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 95.3 0.17 3.6E-06 32.2 6.9 63 124-188 22-84 (103)
260 PF02284 COX5A: Cytochrome c o 95.3 0.15 3.3E-06 32.7 6.7 63 124-188 25-87 (108)
261 PRK11906 transcriptional regul 95.3 1.5 3.3E-05 36.8 15.4 146 57-204 273-431 (458)
262 KOG1585 Protein required for f 95.3 0.98 2.1E-05 34.4 16.4 203 8-235 33-250 (308)
263 PF09205 DUF1955: Domain of un 95.2 0.62 1.3E-05 31.8 14.0 137 16-176 12-151 (161)
264 PRK11619 lytic murein transgly 95.2 2.3 4.9E-05 38.1 22.4 247 12-272 105-372 (644)
265 COG4649 Uncharacterized protei 95.1 0.84 1.8E-05 32.8 11.7 118 88-206 68-193 (221)
266 PF10602 RPN7: 26S proteasome 95.0 0.69 1.5E-05 33.7 10.4 89 44-135 38-139 (177)
267 PF13176 TPR_7: Tetratricopept 95.0 0.063 1.4E-06 27.3 3.7 27 248-274 1-27 (36)
268 KOG4555 TPR repeat-containing 95.0 0.46 9.9E-06 32.3 8.4 88 153-243 52-146 (175)
269 PF04184 ST7: ST7 protein; In 94.9 2.1 4.5E-05 36.3 15.9 58 114-171 264-322 (539)
270 KOG1920 IkappaB kinase complex 94.9 3.5 7.5E-05 38.8 20.6 125 93-238 895-1025(1265)
271 COG3629 DnrI DNA-binding trans 94.9 0.45 9.9E-06 37.2 9.6 71 9-81 156-230 (280)
272 PF08631 SPO22: Meiosis protei 94.8 1.6 3.5E-05 34.5 22.7 157 111-271 86-271 (278)
273 PF13176 TPR_7: Tetratricopept 94.8 0.099 2.2E-06 26.6 4.1 26 8-33 1-26 (36)
274 PRK11906 transcriptional regul 94.6 2.5 5.3E-05 35.6 16.3 160 7-169 252-432 (458)
275 COG4649 Uncharacterized protei 94.5 1.2 2.6E-05 32.0 11.1 131 110-242 60-197 (221)
276 COG0457 NrfG FOG: TPR repeat [ 94.4 1.5 3.3E-05 32.7 24.4 200 42-243 59-267 (291)
277 COG4785 NlpI Lipoprotein NlpI, 94.4 1.6 3.4E-05 32.8 11.9 27 247-273 238-264 (297)
278 COG4105 ComL DNA uptake lipopr 94.3 1.8 4E-05 33.2 17.9 158 116-274 41-232 (254)
279 cd00923 Cyt_c_Oxidase_Va Cytoc 94.3 0.31 6.7E-06 31.0 6.1 49 21-70 22-70 (103)
280 KOG2610 Uncharacterized conser 94.3 0.99 2.1E-05 36.1 10.2 161 119-282 113-283 (491)
281 COG0457 NrfG FOG: TPR repeat [ 94.2 1.7 3.8E-05 32.3 25.5 216 56-274 37-264 (291)
282 PF08631 SPO22: Meiosis protei 94.2 2.3 5E-05 33.7 22.0 135 8-144 38-192 (278)
283 PF02284 COX5A: Cytochrome c o 94.1 0.34 7.4E-06 31.2 6.2 59 24-85 28-86 (108)
284 PF00515 TPR_1: Tetratricopept 94.0 0.19 4.1E-06 24.9 4.2 28 7-34 2-29 (34)
285 KOG2114 Vacuolar assembly/sort 94.0 4.6 0.0001 36.6 14.9 177 46-238 338-516 (933)
286 PF00515 TPR_1: Tetratricopept 93.9 0.17 3.6E-06 25.1 3.9 28 247-274 2-29 (34)
287 KOG4570 Uncharacterized conser 93.9 0.29 6.4E-06 38.5 6.6 100 72-172 58-163 (418)
288 PF02259 FAT: FAT domain; Int 93.5 3.5 7.6E-05 33.7 18.3 64 211-274 145-212 (352)
289 KOG0550 Molecular chaperone (D 93.5 3.8 8.2E-05 33.9 17.6 162 40-206 166-347 (486)
290 KOG1258 mRNA processing protei 93.3 5.1 0.00011 34.8 23.5 96 180-275 297-395 (577)
291 PF07035 Mic1: Colon cancer-as 93.3 2.2 4.9E-05 30.6 13.7 133 26-170 14-146 (167)
292 PF07079 DUF1347: Protein of u 93.0 4.8 0.0001 33.8 24.1 67 211-283 459-527 (549)
293 PF07719 TPR_2: Tetratricopept 93.0 0.35 7.6E-06 23.8 4.2 28 7-34 2-29 (34)
294 KOG1920 IkappaB kinase complex 93.0 8.3 0.00018 36.5 15.2 21 151-171 972-992 (1265)
295 PF13431 TPR_17: Tetratricopep 93.0 0.15 3.2E-06 25.6 2.6 25 74-98 9-33 (34)
296 PF07719 TPR_2: Tetratricopept 92.9 0.3 6.4E-06 24.1 3.9 28 247-274 2-29 (34)
297 COG3118 Thioredoxin domain-con 92.8 4 8.7E-05 32.2 17.4 52 52-105 144-195 (304)
298 PF07035 Mic1: Colon cancer-as 92.7 2.8 6E-05 30.2 14.0 124 4-139 27-150 (167)
299 PF00637 Clathrin: Region in C 92.6 0.087 1.9E-06 36.9 2.1 84 48-135 13-96 (143)
300 KOG1464 COP9 signalosome, subu 92.6 3.9 8.5E-05 31.8 15.0 221 11-237 70-328 (440)
301 PF13374 TPR_10: Tetratricopep 92.5 0.32 7E-06 25.3 3.8 29 246-274 2-30 (42)
302 PF13374 TPR_10: Tetratricopep 92.4 0.45 9.8E-06 24.7 4.4 29 6-34 2-30 (42)
303 PF09613 HrpB1_HrpK: Bacterial 92.4 2.9 6.2E-05 29.7 11.9 17 120-136 55-71 (160)
304 PF11207 DUF2989: Protein of u 92.3 2.2 4.7E-05 31.6 8.8 76 124-200 121-198 (203)
305 KOG4648 Uncharacterized conser 91.9 0.53 1.2E-05 37.6 5.7 93 151-245 104-198 (536)
306 KOG0276 Vesicle coat complex C 91.8 4.6 0.0001 35.2 11.3 123 90-240 598-720 (794)
307 PF09613 HrpB1_HrpK: Bacterial 91.7 3.6 7.8E-05 29.3 11.9 49 155-206 21-70 (160)
308 KOG1258 mRNA processing protei 91.6 8.6 0.00019 33.5 18.4 183 75-260 294-489 (577)
309 COG2909 MalT ATP-dependent tra 91.6 11 0.00023 34.6 22.7 197 89-286 426-658 (894)
310 KOG1586 Protein required for f 91.4 5.2 0.00011 30.5 12.7 57 186-242 119-184 (288)
311 PRK15180 Vi polysaccharide bio 91.2 3.8 8.2E-05 34.7 9.9 127 156-286 301-429 (831)
312 PF04097 Nic96: Nup93/Nic96; 90.9 12 0.00025 33.6 16.6 89 13-107 265-356 (613)
313 KOG0276 Vesicle coat complex C 90.8 7.5 0.00016 34.0 11.5 108 87-212 646-753 (794)
314 PF07721 TPR_4: Tetratricopept 90.7 0.41 9E-06 22.1 2.6 24 247-270 2-25 (26)
315 PF13762 MNE1: Mitochondrial s 90.6 4.4 9.6E-05 28.3 10.8 88 72-159 31-130 (145)
316 PF13181 TPR_8: Tetratricopept 90.5 0.69 1.5E-05 22.7 3.6 28 7-34 2-29 (34)
317 KOG4077 Cytochrome c oxidase, 90.4 2.5 5.5E-05 28.5 6.9 73 125-208 65-137 (149)
318 COG1747 Uncharacterized N-term 90.4 11 0.00023 32.5 23.4 177 75-258 63-251 (711)
319 KOG2396 HAT (Half-A-TPR) repea 89.7 12 0.00026 32.0 20.1 243 23-273 299-557 (568)
320 PF11838 ERAP1_C: ERAP1-like C 89.4 10 0.00022 30.7 15.9 77 126-206 147-227 (324)
321 COG4455 ImpE Protein of avirul 89.3 3.2 6.8E-05 31.2 7.3 57 113-170 5-61 (273)
322 PRK15180 Vi polysaccharide bio 89.3 13 0.00028 31.7 12.4 90 114-206 328-417 (831)
323 PF11207 DUF2989: Protein of u 89.3 4.3 9.4E-05 30.1 8.0 74 53-129 118-198 (203)
324 PRK09687 putative lyase; Provi 89.2 9.8 0.00021 30.2 21.3 218 39-275 34-263 (280)
325 TIGR03504 FimV_Cterm FimV C-te 88.9 0.87 1.9E-05 24.4 3.2 26 251-276 4-29 (44)
326 PF13181 TPR_8: Tetratricopept 88.9 1.3 2.8E-05 21.7 3.9 28 247-274 2-29 (34)
327 PRK13184 pknD serine/threonine 88.6 22 0.00048 33.5 21.4 256 12-274 481-832 (932)
328 PF07163 Pex26: Pex26 protein; 88.5 10 0.00022 29.8 9.7 83 85-167 90-181 (309)
329 COG2976 Uncharacterized protei 88.1 8.8 0.00019 28.4 14.0 88 83-172 94-187 (207)
330 PF07163 Pex26: Pex26 protein; 88.0 8.9 0.00019 30.1 9.2 87 44-132 85-181 (309)
331 KOG4077 Cytochrome c oxidase, 87.5 3.7 7.9E-05 27.8 6.1 44 62-106 69-112 (149)
332 KOG4234 TPR repeat-containing 87.0 4.2 9E-05 30.2 6.7 101 153-255 104-211 (271)
333 TIGR03504 FimV_Cterm FimV C-te 86.5 3 6.5E-05 22.3 4.4 26 11-36 4-29 (44)
334 TIGR02561 HrpB1_HrpK type III 86.3 9.4 0.0002 26.8 11.6 50 55-107 23-73 (153)
335 PF13174 TPR_6: Tetratricopept 86.1 1.5 3.3E-05 21.1 3.2 25 11-35 5-29 (33)
336 KOG4234 TPR repeat-containing 85.9 12 0.00026 28.0 8.5 85 119-206 105-194 (271)
337 PF10579 Rapsyn_N: Rapsyn N-te 85.9 3.2 6.8E-05 25.5 4.8 47 156-202 18-65 (80)
338 PF13170 DUF4003: Protein of u 85.8 17 0.00036 29.2 18.7 46 127-172 80-131 (297)
339 PF11846 DUF3366: Domain of un 85.8 4.3 9.2E-05 30.1 6.6 51 156-206 120-170 (193)
340 PF11846 DUF3366: Domain of un 85.5 6.3 0.00014 29.2 7.4 31 107-137 142-172 (193)
341 smart00028 TPR Tetratricopepti 85.3 2.2 4.8E-05 19.7 3.6 28 7-34 2-29 (34)
342 KOG1550 Extracellular protein 85.3 26 0.00056 31.0 16.3 152 22-175 228-394 (552)
343 KOG1550 Extracellular protein 85.3 26 0.00057 31.0 16.6 179 58-242 228-427 (552)
344 KOG4570 Uncharacterized conser 84.5 20 0.00042 28.9 10.3 96 108-206 63-161 (418)
345 COG3947 Response regulator con 84.3 19 0.00041 28.6 13.6 173 108-282 121-354 (361)
346 TIGR02561 HrpB1_HrpK type III 83.6 13 0.00028 26.2 10.9 17 190-206 54-70 (153)
347 COG4455 ImpE Protein of avirul 83.0 11 0.00024 28.5 7.4 77 9-87 4-81 (273)
348 KOG4648 Uncharacterized conser 82.9 4.2 9E-05 32.9 5.6 51 15-68 106-157 (536)
349 PF11848 DUF3368: Domain of un 82.8 5.9 0.00013 21.6 5.1 34 119-152 12-45 (48)
350 PF10579 Rapsyn_N: Rapsyn N-te 82.5 4.9 0.00011 24.7 4.6 45 18-62 18-63 (80)
351 PF02259 FAT: FAT domain; Int 82.3 26 0.00056 28.6 19.7 187 12-206 4-210 (352)
352 COG2178 Predicted RNA-binding 82.3 18 0.00038 26.8 9.1 89 186-274 35-149 (204)
353 TIGR02508 type_III_yscG type I 81.5 12 0.00026 24.3 7.8 87 57-148 20-106 (115)
354 PF13929 mRNA_stabil: mRNA sta 81.5 25 0.00054 27.9 16.5 68 139-206 197-264 (292)
355 PF08311 Mad3_BUB1_I: Mad3/BUB 80.9 15 0.00033 25.1 9.0 42 60-102 81-123 (126)
356 COG1747 Uncharacterized N-term 80.5 38 0.00082 29.4 18.6 157 7-172 67-233 (711)
357 cd08819 CARD_MDA5_2 Caspase ac 80.5 12 0.00026 23.6 6.9 14 123-136 50-63 (88)
358 PHA02875 ankyrin repeat protei 80.5 32 0.0007 29.0 10.7 141 13-168 6-156 (413)
359 PF10366 Vps39_1: Vacuolar sor 80.4 14 0.00031 24.4 7.3 28 110-137 40-67 (108)
360 PF10345 Cohesin_load: Cohesin 80.2 44 0.00096 30.0 17.4 192 38-239 26-252 (608)
361 COG2976 Uncharacterized protei 79.6 23 0.00049 26.3 13.1 105 96-206 70-185 (207)
362 PF04190 DUF410: Protein of un 79.3 28 0.00062 27.3 17.8 159 90-275 2-170 (260)
363 COG4785 NlpI Lipoprotein NlpI, 79.2 25 0.00055 26.7 19.4 182 52-243 75-268 (297)
364 PRK10564 maltose regulon perip 79.1 5.4 0.00012 31.6 5.0 39 112-150 260-298 (303)
365 COG4003 Uncharacterized protei 78.9 4.2 9E-05 24.9 3.4 30 12-41 37-66 (98)
366 KOG3807 Predicted membrane pro 77.6 12 0.00027 30.1 6.6 54 153-206 284-337 (556)
367 COG5159 RPN6 26S proteasome re 77.2 35 0.00075 27.1 11.4 134 11-145 8-165 (421)
368 PF04097 Nic96: Nup93/Nic96; 77.1 56 0.0012 29.5 18.2 44 11-56 116-159 (613)
369 PF08311 Mad3_BUB1_I: Mad3/BUB 75.8 22 0.00049 24.2 8.2 42 230-271 81-124 (126)
370 PF14689 SPOB_a: Sensor_kinase 74.9 10 0.00022 22.0 4.4 29 41-69 22-50 (62)
371 COG3947 Response regulator con 74.7 42 0.0009 26.8 15.2 145 94-240 149-341 (361)
372 KOG2908 26S proteasome regulat 74.5 46 0.00099 27.2 9.1 81 82-162 79-175 (380)
373 PF11663 Toxin_YhaV: Toxin wit 74.1 4.3 9.4E-05 27.8 2.9 34 119-154 105-138 (140)
374 PF14689 SPOB_a: Sensor_kinase 73.7 5.8 0.00013 23.1 3.1 27 248-274 25-51 (62)
375 PF06552 TOM20_plant: Plant sp 73.4 33 0.00072 25.1 7.9 27 126-154 97-123 (186)
376 KOG0991 Replication factor C, 72.9 41 0.0009 26.0 11.1 88 52-143 169-272 (333)
377 PF10345 Cohesin_load: Cohesin 72.2 75 0.0016 28.6 18.1 179 95-274 38-253 (608)
378 smart00386 HAT HAT (Half-A-TPR 72.0 8.2 0.00018 18.2 3.1 27 227-253 2-28 (33)
379 COG0735 Fur Fe2+/Zn2+ uptake r 71.9 29 0.00063 24.4 6.8 45 150-195 26-70 (145)
380 PF09477 Type_III_YscG: Bacter 71.5 26 0.00057 23.1 7.5 78 57-138 21-98 (116)
381 PF10255 Paf67: RNA polymerase 71.4 24 0.00053 29.6 7.2 55 82-136 126-191 (404)
382 PF13762 MNE1: Mitochondrial s 71.4 33 0.00071 24.1 9.4 43 80-122 81-128 (145)
383 KOG0545 Aryl-hydrocarbon recep 71.0 47 0.001 25.9 7.9 53 222-274 240-292 (329)
384 KOG2297 Predicted translation 70.9 54 0.0012 26.4 13.9 21 212-232 321-341 (412)
385 COG5159 RPN6 26S proteasome re 70.8 52 0.0011 26.2 13.3 20 185-204 130-149 (421)
386 PF11663 Toxin_YhaV: Toxin wit 70.7 4.8 0.0001 27.6 2.5 32 18-52 107-138 (140)
387 PF11817 Foie-gras_1: Foie gra 69.7 36 0.00078 26.4 7.6 57 80-136 180-245 (247)
388 PF14853 Fis1_TPR_C: Fis1 C-te 69.5 18 0.00038 20.3 4.7 34 12-48 7-40 (53)
389 PRK10941 hypothetical protein; 69.1 56 0.0012 25.9 10.1 58 11-70 186-243 (269)
390 smart00804 TAP_C C-terminal do 68.7 5.3 0.00011 23.4 2.1 23 21-43 40-62 (63)
391 PF06552 TOM20_plant: Plant sp 68.0 23 0.0005 25.9 5.6 40 94-139 96-137 (186)
392 TIGR02508 type_III_yscG type I 67.6 32 0.00068 22.5 8.0 30 188-218 47-76 (115)
393 PF03745 DUF309: Domain of unk 67.5 22 0.00048 20.7 5.0 48 16-64 9-61 (62)
394 PF12862 Apc5: Anaphase-promot 67.5 29 0.00063 22.1 7.3 53 120-172 9-69 (94)
395 KOG0403 Neoplastic transformat 67.3 80 0.0017 27.0 15.8 74 183-259 512-587 (645)
396 PRK11639 zinc uptake transcrip 67.1 32 0.00069 24.9 6.4 40 156-196 37-76 (169)
397 PRK10564 maltose regulon perip 66.8 10 0.00022 30.1 4.0 35 248-282 259-293 (303)
398 COG5108 RPO41 Mitochondrial DN 66.6 48 0.001 29.9 8.1 47 114-160 33-81 (1117)
399 KOG0687 26S proteasome regulat 66.5 70 0.0015 26.0 12.6 131 38-172 66-209 (393)
400 KOG0292 Vesicle coat complex C 66.1 1.1E+02 0.0023 28.8 10.2 131 87-241 652-782 (1202)
401 KOG1464 COP9 signalosome, subu 66.0 64 0.0014 25.5 15.9 204 3-206 23-258 (440)
402 COG2909 MalT ATP-dependent tra 65.9 1.2E+02 0.0025 28.5 22.2 219 52-271 425-684 (894)
403 KOG4507 Uncharacterized conser 65.8 99 0.0021 27.6 9.9 81 91-172 620-704 (886)
404 PF11817 Foie-gras_1: Foie gra 65.8 48 0.001 25.8 7.6 77 95-171 162-245 (247)
405 PF09986 DUF2225: Uncharacteri 65.4 58 0.0013 24.7 8.0 29 248-276 167-195 (214)
406 cd07153 Fur_like Ferric uptake 65.4 21 0.00046 23.7 5.0 45 115-159 6-50 (116)
407 cd00280 TRFH Telomeric Repeat 65.3 53 0.0011 24.2 7.7 24 83-106 116-139 (200)
408 PF08314 Sec39: Secretory path 64.9 1.2E+02 0.0026 28.1 12.0 87 6-94 432-529 (715)
409 cd08819 CARD_MDA5_2 Caspase ac 64.6 33 0.00072 21.6 7.5 66 128-200 21-86 (88)
410 PRK10941 hypothetical protein; 64.3 70 0.0015 25.3 10.0 76 147-224 184-263 (269)
411 PRK09687 putative lyase; Provi 64.2 72 0.0016 25.4 26.2 233 3-256 34-277 (280)
412 PF12862 Apc5: Anaphase-promot 63.0 37 0.00079 21.6 7.1 55 16-70 8-69 (94)
413 KOG4642 Chaperone-dependent E3 62.9 27 0.00058 27.0 5.3 116 154-272 20-143 (284)
414 PHA02875 ankyrin repeat protei 62.6 94 0.002 26.2 10.3 212 49-282 6-231 (413)
415 KOG0890 Protein kinase of the 62.6 2.2E+02 0.0047 30.3 19.0 62 212-275 1670-1731(2382)
416 PRK13800 putative oxidoreducta 62.4 1.5E+02 0.0032 28.4 23.6 184 76-274 696-880 (897)
417 PF11848 DUF3368: Domain of un 62.1 24 0.00052 19.2 5.0 34 16-50 12-45 (48)
418 TIGR02270 conserved hypothetic 62.1 99 0.0022 26.3 23.2 234 13-272 45-278 (410)
419 KOG2908 26S proteasome regulat 61.7 76 0.0017 26.0 7.8 22 253-274 122-143 (380)
420 KOG0686 COP9 signalosome, subu 60.9 1E+02 0.0022 26.0 12.4 90 80-171 152-256 (466)
421 KOG2582 COP9 signalosome, subu 60.8 96 0.0021 25.7 15.0 119 154-276 193-346 (422)
422 PF01475 FUR: Ferric uptake re 60.6 21 0.00045 24.0 4.3 44 115-158 13-56 (120)
423 PF08424 NRDE-2: NRDE-2, neces 60.2 93 0.002 25.3 14.3 26 147-172 157-182 (321)
424 PF09986 DUF2225: Uncharacteri 59.4 76 0.0016 24.1 8.7 85 122-206 90-191 (214)
425 PF12069 DUF3549: Protein of u 58.8 1E+02 0.0022 25.3 12.7 88 82-172 170-258 (340)
426 PF04190 DUF410: Protein of un 58.5 89 0.0019 24.6 13.0 26 77-102 89-114 (260)
427 KOG1308 Hsp70-interacting prot 57.9 7 0.00015 31.6 1.7 116 155-273 125-242 (377)
428 PF02184 HAT: HAT (Half-A-TPR) 57.8 18 0.00038 17.9 2.5 23 21-46 2-24 (32)
429 TIGR03184 DNA_S_dndE DNA sulfu 56.6 30 0.00065 22.7 4.2 35 123-157 61-97 (105)
430 KOG2066 Vacuolar assembly/sort 56.4 1.7E+02 0.0036 27.1 10.9 187 49-259 363-552 (846)
431 smart00777 Mad3_BUB1_I Mad3/BU 55.4 64 0.0014 22.0 8.4 37 97-133 82-123 (125)
432 PF09670 Cas_Cas02710: CRISPR- 55.2 1.3E+02 0.0027 25.3 11.8 50 121-171 143-196 (379)
433 cd00280 TRFH Telomeric Repeat 55.1 84 0.0018 23.2 7.6 20 153-172 120-139 (200)
434 PF10366 Vps39_1: Vacuolar sor 54.6 32 0.00069 22.7 4.2 27 44-70 41-67 (108)
435 KOG2471 TPR repeat-containing 54.6 1.5E+02 0.0032 25.9 8.9 104 86-192 248-381 (696)
436 PF04124 Dor1: Dor1-like famil 54.5 1.1E+02 0.0023 25.3 8.1 37 44-80 108-144 (338)
437 KOG2063 Vacuolar assembly/sort 54.3 2E+02 0.0043 27.3 15.1 111 81-192 507-638 (877)
438 PF08870 DUF1832: Domain of un 53.7 34 0.00073 22.9 4.2 35 123-158 62-96 (113)
439 KOG0376 Serine-threonine phosp 53.3 12 0.00027 31.6 2.5 95 151-248 11-108 (476)
440 PF13934 ELYS: Nuclear pore co 52.7 1E+02 0.0023 23.6 16.0 110 72-194 73-186 (226)
441 PF04034 DUF367: Domain of unk 52.1 74 0.0016 21.8 7.2 58 180-237 66-124 (127)
442 PF11838 ERAP1_C: ERAP1-like C 52.0 1.2E+02 0.0027 24.3 13.1 87 53-139 141-231 (324)
443 COG0735 Fur Fe2+/Zn2+ uptake r 51.4 83 0.0018 22.1 7.1 47 112-158 23-69 (145)
444 PF10475 DUF2450: Protein of u 51.3 1.3E+02 0.0027 24.2 10.8 22 115-136 133-154 (291)
445 KOG4567 GTPase-activating prot 51.2 1.3E+02 0.0029 24.4 10.3 41 165-206 264-304 (370)
446 KOG1498 26S proteasome regulat 51.0 1.5E+02 0.0032 24.9 16.3 94 184-277 135-243 (439)
447 PF04090 RNA_pol_I_TF: RNA pol 50.9 1E+02 0.0022 23.1 6.7 25 182-206 43-67 (199)
448 PF04910 Tcf25: Transcriptiona 50.3 1.5E+02 0.0032 24.7 16.6 58 115-172 109-167 (360)
449 KOG0292 Vesicle coat complex C 50.2 33 0.00072 31.8 4.7 44 192-238 655-698 (1202)
450 PF10475 DUF2450: Protein of u 49.9 1.3E+02 0.0029 24.0 9.4 137 19-165 73-218 (291)
451 PF03943 TAP_C: TAP C-terminal 49.8 6 0.00013 22.0 0.2 23 20-42 27-49 (51)
452 KOG4279 Serine/threonine prote 49.1 2.2E+02 0.0049 26.4 14.2 185 59-247 180-401 (1226)
453 KOG4642 Chaperone-dependent E3 49.1 1.3E+02 0.0027 23.5 9.3 119 87-207 19-144 (284)
454 PRK14962 DNA polymerase III su 49.1 1.8E+02 0.0039 25.3 13.5 97 59-158 179-292 (472)
455 PF02847 MA3: MA3 domain; Int 48.8 75 0.0016 20.8 6.3 24 10-33 6-29 (113)
456 PF04090 RNA_pol_I_TF: RNA pol 48.4 1.1E+02 0.0024 22.9 6.5 29 8-36 43-71 (199)
457 KOG0687 26S proteasome regulat 47.8 1.6E+02 0.0034 24.2 12.9 125 144-270 104-245 (393)
458 KOG2396 HAT (Half-A-TPR) repea 47.8 1.9E+02 0.0042 25.3 16.7 227 3-242 312-560 (568)
459 KOG0545 Aryl-hydrocarbon recep 47.7 1.4E+02 0.0029 23.5 8.6 54 156-211 242-296 (329)
460 PF02847 MA3: MA3 domain; Int 47.7 70 0.0015 21.0 5.2 25 83-107 7-31 (113)
461 COG4259 Uncharacterized protei 47.5 60 0.0013 21.1 4.3 50 232-283 57-107 (121)
462 TIGR01914 cas_Csa4 CRISPR-asso 47.4 1.4E+02 0.0031 24.4 7.2 64 90-154 288-351 (354)
463 PRK09857 putative transposase; 47.3 1.5E+02 0.0032 23.8 7.8 64 217-280 211-274 (292)
464 KOG0686 COP9 signalosome, subu 46.8 1.8E+02 0.0039 24.7 12.8 160 110-273 151-331 (466)
465 KOG0890 Protein kinase of the 46.4 4E+02 0.0087 28.6 18.9 146 114-268 1388-1540(2382)
466 KOG4279 Serine/threonine prote 46.4 2.5E+02 0.0054 26.2 10.2 172 98-274 183-394 (1226)
467 PF07575 Nucleopor_Nup85: Nup8 46.3 41 0.00089 29.9 4.8 92 8-105 374-465 (566)
468 PRK12798 chemotaxis protein; R 46.3 1.9E+02 0.004 24.6 20.3 220 52-280 91-329 (421)
469 PF09454 Vps23_core: Vps23 cor 46.0 62 0.0013 19.1 4.6 49 4-54 6-54 (65)
470 cd07153 Fur_like Ferric uptake 45.9 53 0.0011 21.7 4.4 46 12-58 6-51 (116)
471 PRK08691 DNA polymerase III su 45.6 2.5E+02 0.0054 26.0 9.4 30 147-178 249-278 (709)
472 PF09477 Type_III_YscG: Bacter 45.5 89 0.0019 20.8 10.1 76 123-206 20-95 (116)
473 KOG0403 Neoplastic transformat 45.1 2E+02 0.0044 24.8 16.0 63 214-276 511-573 (645)
474 cd08326 CARD_CASP9 Caspase act 45.1 76 0.0017 19.9 6.8 11 125-135 46-56 (84)
475 PF02607 B12-binding_2: B12 bi 44.8 39 0.00084 20.5 3.3 35 121-155 13-47 (79)
476 PF03745 DUF309: Domain of unk 44.5 63 0.0014 18.8 5.5 14 122-135 12-25 (62)
477 PF09868 DUF2095: Uncharacteri 44.3 95 0.0021 20.8 5.1 25 12-36 67-91 (128)
478 PF11123 DNA_Packaging_2: DNA 44.2 49 0.0011 20.0 3.3 15 260-274 59-73 (82)
479 PF04910 Tcf25: Transcriptiona 43.9 1.9E+02 0.0041 24.1 14.2 54 219-272 110-165 (360)
480 COG4976 Predicted methyltransf 43.0 57 0.0012 25.1 4.3 57 191-247 6-64 (287)
481 PRK14956 DNA polymerase III su 43.0 2.3E+02 0.005 24.8 9.9 13 193-205 213-225 (484)
482 TIGR03581 EF_0839 conserved hy 42.9 1.3E+02 0.0029 22.9 6.1 60 214-273 165-235 (236)
483 PF01475 FUR: Ferric uptake re 42.5 49 0.0011 22.1 3.8 45 11-56 12-56 (120)
484 PF09670 Cas_Cas02710: CRISPR- 42.3 2.1E+02 0.0045 24.1 10.6 52 153-206 140-195 (379)
485 smart00638 LPD_N Lipoprotein N 42.2 2.5E+02 0.0055 25.1 18.5 61 41-107 309-369 (574)
486 PRK14958 DNA polymerase III su 42.1 2.5E+02 0.0053 24.9 10.3 77 64-143 186-279 (509)
487 PF11768 DUF3312: Protein of u 42.1 2.5E+02 0.0054 24.9 11.3 25 11-35 413-437 (545)
488 PF14669 Asp_Glu_race_2: Putat 42.0 1.5E+02 0.0032 22.3 15.7 181 4-206 6-207 (233)
489 PF14561 TPR_20: Tetratricopep 41.6 91 0.002 19.7 8.2 34 74-107 18-51 (90)
490 smart00777 Mad3_BUB1_I Mad3/BU 41.5 1.1E+02 0.0025 20.9 7.0 42 229-270 80-123 (125)
491 PRK11639 zinc uptake transcrip 41.1 1.4E+02 0.003 21.7 7.4 51 110-160 26-76 (169)
492 PF11768 DUF3312: Protein of u 41.0 2.3E+02 0.005 25.1 8.0 94 183-276 411-524 (545)
493 PRK14956 DNA polymerase III su 40.7 2.5E+02 0.0054 24.6 9.9 32 72-105 196-227 (484)
494 PRK09462 fur ferric uptake reg 40.2 88 0.0019 22.0 4.9 45 114-158 21-66 (148)
495 KOG1498 26S proteasome regulat 40.1 2.3E+02 0.005 23.9 16.8 179 19-206 25-238 (439)
496 COG0819 TenA Putative transcri 39.7 1.7E+02 0.0037 22.4 8.2 54 2-56 105-169 (218)
497 KOG2422 Uncharacterized conser 39.0 2.9E+02 0.0062 24.8 11.2 121 154-276 248-408 (665)
498 KOG4814 Uncharacterized conser 38.8 3.1E+02 0.0067 25.0 9.1 85 190-274 364-456 (872)
499 PF07575 Nucleopor_Nup85: Nup8 38.5 1E+02 0.0023 27.5 6.1 14 193-206 508-521 (566)
500 KOG3364 Membrane protein invol 38.4 1.4E+02 0.003 20.9 8.8 69 141-211 29-103 (149)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-54 Score=380.54 Aligned_cols=291 Identities=33% Similarity=0.644 Sum_probs=284.3
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
||+||+++||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|++++|.+++..|.+ .|++|+..+
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~ 362 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVA 362 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeee
Confidence 688999999999999999999999999999999988 999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+++|+.+|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+.+.+..+++++.+
T Consensus 443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~ 522 (697)
T PLN03081 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 99999999998767999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCCCC
Q 036775 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~~~ 293 (293)
..|.+..+|..|+.+|++.|++++|.+++++|++.|+++.+++.|+.+++.+|
T Consensus 523 ~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 88888999999999999999999999999999999999999999999998764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-51 Score=365.20 Aligned_cols=282 Identities=20% Similarity=0.290 Sum_probs=140.7
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
||..+||+||.+|++.|++++|.++|++|.+.| +.||..+|+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|+.
T Consensus 470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~-~Gv~PD~vTYns 547 (1060)
T PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-KNVKPDRVVFNA 547 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence 444555555555555555555555555554444 445555555555555555555555555555544 445555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh------hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775 84 VINMYVKCGDVGIAIQVFNMLA------YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 157 (293)
||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.
T Consensus 548 LI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 5555555555555555555443 1344445555555555555555555555555444444555555555555555
Q ss_pred CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhchHH
Q 036775 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (293)
|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|++| +..||..+|+.++.+|.+.|+.++|..+
T Consensus 628 G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 628 GDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 555555555555544 344455445555555555555555555555444 3444555555555555555555555555
Q ss_pred HHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeee
Q 036775 235 RQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEV 288 (293)
Q Consensus 235 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i 288 (293)
|++|.+.+ .|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|.+++
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 54444332 4444555555555555555555555555555555555554444443
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-51 Score=364.09 Aligned_cols=288 Identities=15% Similarity=0.254 Sum_probs=278.3
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
|+.||..+||.+|.+|++.|++++|.++|+.|.+.| ..||..+|+.+|.+|++.|+++.|.++|++|.+ .|+.||..+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvT 509 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHT 509 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHH
Confidence 577999999999999999999999999999999999 999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCcHhHHHHHHHHH
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISGLAMNGCGRQALQLFSLMII--NGVFPDDVTFIALISAC 154 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~ 154 (293)
|+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||++++.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999974 6899999999999999999999999999986 68999999999999999
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhHHHHHHHHHHhcCChhhc
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 231 (293)
++.|++++|.++|+.|.+ .+++|+..+|+.+|.+|++.|++++|.++|++| ++.||..+|+.++.+|.+.|+.++|
T Consensus 590 ~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999998 799999999999999999999999999999999 7899999999999999999999999
Q ss_pred hHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCC
Q 036775 232 DPIRQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291 (293)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~ 291 (293)
..+++.|.+.+ +|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|.++|.++
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999877 8899999999999999999999999999999999999999998888765
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-51 Score=358.89 Aligned_cols=286 Identities=24% Similarity=0.373 Sum_probs=276.7
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
||+||..+||++|.+|++.|++++|+++|++|.+.| ..||..+|..++.+|++.|..+.+.+++..+.+ .|+.||..+
T Consensus 184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~-~g~~~d~~~ 261 (697)
T PLN03081 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK-TGVVGDTFV 261 (697)
T ss_pred CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH-hCCCcccee
Confidence 688999999999999999999999999999999988 999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
++.|+.+|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~ 341 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
++|.+++..|.+ .|+.||..+|+.|+++|++.|++++|.++|++|. .||..+|+++|.+|.++|+.++|..+|++|.+
T Consensus 342 ~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 342 EHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999997 7999999999999999999999999999999997 68999999999999999999999999999988
Q ss_pred hc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCCCccceeeecC
Q 036775 241 KK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR-MGLKKKTGCSWIEVNP 290 (293)
Q Consensus 241 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~~i~~ 290 (293)
.+ .||..||+.++.+|++.|++++|.++|++|.+ .|+.|+..+|..+|++
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 66 89999999999999999999999999999986 6999999999887764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-50 Score=359.83 Aligned_cols=289 Identities=42% Similarity=0.792 Sum_probs=280.3
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
|++||+.+||++|.+|++.|+.++|+++|++|.. + ++||..||+.++.+|++.|+++.+.+++..+.+ .|+.++..+
T Consensus 450 m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~ 526 (857)
T PLN03077 450 IPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFL 526 (857)
T ss_pred CCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcccee
Confidence 6789999999999999999999999999999975 4 899999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+++|+.+|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++...+++.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 99999999999658999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCCCC
Q 036775 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPSIF 293 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~~~ 293 (293)
..|.+...|..|...|...|+|++|.++.+.|++.|++++++++||+++|.||
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-49 Score=356.38 Aligned_cols=287 Identities=24% Similarity=0.446 Sum_probs=258.9
Q ss_pred CCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 1 MPKRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 1 ~p~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
||+||.++||++|.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+.+.+.+++..+.+ .|+.||..+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~ 325 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSV 325 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHH
Confidence 789999999999999999999999999999999998 999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
|+.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~ 405 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
+.|.++++.+.+ .|+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|++++.+|.+.|+.++|..+|++|..
T Consensus 406 ~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 406 DVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999997 7999999999999999999999999999999996 46777777777777777777777777766654
Q ss_pred hcC-----------------------------------------------------------------CchhhHHHHHHH
Q 036775 241 KKG-----------------------------------------------------------------VSVGTFALMSNT 255 (293)
Q Consensus 241 ~~~-----------------------------------------------------------------~~~~~~~~li~~ 255 (293)
..+ +|..+|+.+|.+
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~ 563 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTG 563 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHH
Confidence 332 344456677777
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCccceeeecCC
Q 036775 256 FAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVNPS 291 (293)
Q Consensus 256 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~~~ 291 (293)
|++.|+.++|.++|++|.+.|+.||..+|..++.++
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 777788888888888888888888888777766544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.5e-22 Score=167.30 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=219.3
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc--hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP--NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
.+..+|..+...+...|++++|..+++.+...+...+ +...+..+...+...|+++.|..+++.+.+ ..+.+..++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~ 144 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD--EGDFAEGAL 144 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc--CCcchHHHH
Confidence 3566788888999999999999999999877541111 124677788888999999999999999877 345667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCc--------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKDM--------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
..++..+.+.|++++|.+.++.+.+.+. ..+..+...+.+.|++++|...|+++.+... .+...+..+...
T Consensus 145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 223 (389)
T PRK11788 145 QQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHH
Confidence 8999999999999999999998876422 1345677778889999999999999887643 245677888888
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhch
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
+.+.|++++|.++++++.+ .+......+++.++.+|...|++++|...++++ ...|+...+..+...+...|+++.|.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999886 222222456788899999999999999999988 55677777788888899999999999
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775 233 PIRQELVNKKGVSVGTFALMSNTFAG---ADRWEDANKIRDEIRRMGLKKKTGCS 284 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 284 (293)
.+++++.+..| +..++..++..+.. .|+.+++..++++|.+.+++|++...
T Consensus 303 ~~l~~~l~~~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 303 ALLREQLRRHP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHHHhCc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 99998888765 44577777766654 56899999999999998888888743
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4.8e-21 Score=158.27 Aligned_cols=265 Identities=11% Similarity=0.002 Sum_probs=217.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---NLVGNAVINMYV 89 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 89 (293)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.. ....++ ...+..+...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHH
Confidence 334667899999999999999853 44566888899999999999999999999887 322121 246788999999
Q ss_pred HcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCCChhH
Q 036775 90 KCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQ 162 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~ 162 (293)
+.|++++|..+|+++.+. +..+++.++..+...|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++
T Consensus 119 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999863 5668999999999999999999999999887644322 245667778889999999
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
|...++++.+. .+.+...+..+...|.+.|++++|.++++++ ...|+ ..+++.+..+|...|+.++|...++++.
T Consensus 199 A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 199 ARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999862 2344567888999999999999999999998 33454 3467888999999999999999999998
Q ss_pred hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285 (293)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 285 (293)
+..|. ...+..++..+.+.|++++|.++++++.+. .|+...+.
T Consensus 277 ~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 277 EEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred HhCCC-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 87654 456688999999999999999999988774 56665444
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=5.7e-20 Score=167.15 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=176.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+..++..+...+.+.|++++|...++++...+ +.+...+..+...+...|++++|..+++.+.+ ..+.+..+|..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 607 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAAD--AAPDSPEAWLML 607 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHH
Confidence 44556666666666666666666666665542 33445555666666666777777777776655 445566667777
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
..+|.+.|++++|...|+++.+. +...+..+..++.+.|++++|...|+++.+... .+..++..+...+...|+++
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777766542 444566677777777777777777777765432 24566667777777777777
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
+|.++++.+.+ ..+.+...+..+...+...|++++|...|+.+ ...|+..++..+...+...|+.++|...++.+.+
T Consensus 687 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777765 22445556666777777777777777777776 4445555666666677777777777777777777
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
..|.++..+..+...|...|++++|.+.|+++.+.
T Consensus 765 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 765 THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=1.1e-19 Score=165.23 Aligned_cols=262 Identities=9% Similarity=0.004 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
...|..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+ ..+.+...+..++
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 676 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLA 676 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 3444444444444444444444444444321 22233344444444444444444444444443 2233344444444
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
..+...|++++|.++++.+.+. +...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHH
Confidence 4444445555555444444432 33344555555555666666666666655543 333455555566666666666
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
|.+.++.+.+ ..+.+...+..+...|...|++++|...|+++ .. .++...++.+...+...|+ .+|...+++..+
T Consensus 755 A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 755 AVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 6666666654 23345556666666666677777777776666 22 2344456666666666666 556666666666
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
..|.++.++..+..++...|++++|.++|+++.+.+
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666666777777777777777777776644
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.3e-17 Score=142.58 Aligned_cols=256 Identities=9% Similarity=-0.051 Sum_probs=150.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (293)
++.+....|++++|+..|+++.... +.+...+..+...+...|++++|...++.+.+ -.|.+...+..+...+...
T Consensus 82 l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~--l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 82 WVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWL--AFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred HhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHC
Confidence 3344555677777777777766642 33344555666666677777777777777665 2344455566666667777
Q ss_pred CCHHHHHHHHHHhhh--C-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHH
Q 036775 92 GDVGIAIQVFNMLAY--K-DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFK 168 (293)
Q Consensus 92 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 168 (293)
|++++|...++++.. | +...+..+ ..+.+.|++++|...++.+.+....++......+..++.+.|++++|...++
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~ 236 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGE 236 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777776665542 2 22222222 2355666666666666666554333333444444555666666666666666
Q ss_pred HhhhhcCCCcchhHHHHHHHHHHhcCChHH----HHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEE----AEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
.+.+ ..+.+...+..+...|...|++++ |...|++. ...|+ ...+..+...+...|++++|...+++..+..
T Consensus 237 ~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 237 SALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6664 123344555566666666666664 56666655 33343 3355556666666666666666666666666
Q ss_pred CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
|.++..+..+..++.+.|++++|...|+++.+
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.7e-16 Score=138.14 Aligned_cols=263 Identities=10% Similarity=-0.037 Sum_probs=214.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+...+...|++++|+..++++.+. .+.+...+..+..++...|++++|...++.+.. ..+.+...+..+
T Consensus 109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~--~~P~~~~a~~~~ 184 (656)
T PRK15174 109 QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ--EVPPRGDMIATC 184 (656)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 5667888889999999999999999999884 244466788888999999999999999998866 233333444343
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKD----MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
..+...|++++|...++.+.+.+ ...+..+..++...|++++|...|+++.+.... +...+..+...+...|++
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRS 262 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCc
Confidence 34788999999999999987642 233455667889999999999999999987543 577788889999999999
Q ss_pred hH----HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHH
Q 036775 161 DQ----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 161 ~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 234 (293)
++ |...++...+ -.+.+...+..+...+...|++++|...+++. ...|+ ...+..+..++...|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 8999999986 23445678899999999999999999999998 44554 44667778889999999999999
Q ss_pred HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
++.+....|.+...+..+..++...|++++|.+.|++..+.
T Consensus 341 l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 341 FVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999888777666666788899999999999999998763
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=3.4e-18 Score=139.10 Aligned_cols=265 Identities=11% Similarity=0.124 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
..|+.|-..+-..|+...|+..|++..+ +.|+ ...|..+...+...+.++.|...|.+... --+....++..+.
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla 293 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLA 293 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceE
Confidence 3577777888888999999999999887 5566 56888899999999999999999988865 3444567788888
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
..|...|+++-|+..|++..+.+ ...|+.|..++-..|+..+|.+.|++....... -....+.|...+...|.+++
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchH
Confidence 88999999999999999988653 458999999999999999999999998876332 45678889999999999999
Q ss_pred HHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 163 GLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .+.|+.. .|+.+...|...|+.+.|.+.+.+..
T Consensus 373 A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 373 ATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 9999999885 2344 467899999999999999999999988 7888754 88899999999999999999999999
Q ss_pred hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
...|.-...++.|...|-..|+..+|+.-+++..+ ++||..
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp 490 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP 490 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence 98888889999999999999999999999998765 666654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=2.6e-16 Score=137.10 Aligned_cols=251 Identities=12% Similarity=-0.047 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775 20 GFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98 (293)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (293)
+++++|.+.|+.....+...|+ ...+..+...+...|++++|...++...+ ..|.....|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 6789999999999876433454 45677777888899999999999999977 34445668889999999999999999
Q ss_pred HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775 99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175 (293)
Q Consensus 99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 175 (293)
..|++..+. +..+|..+...+...|++++|...|++..+.... +...+..+..++.+.|++++|...++...+ .
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~ 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKK--N 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 999988754 5678999999999999999999999999886443 567788888899999999999999999986 3
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-h-------HHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775 176 IVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-S-------VWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
.+.+...++.+...+...|++++|+..|++. ...|+. . .++.....+...|++++|..++++..+..|.+.
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~ 542 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECD 542 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3455778999999999999999999999986 433421 1 112222234457999999999999998888888
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
..+..+...+.+.|++++|.+.|++..+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88999999999999999999999987653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=1.1e-15 Score=133.10 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=125.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHH
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMY 190 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 190 (293)
.|+.+...+...|++++|+..|++..+.... +...|..+...+...|++++|...|+.+.+. .+.+..+|..+...+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4555566666778888888888887765322 3557777777788888888888888888752 234567788888888
Q ss_pred HhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 191 GRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 191 ~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
...|++++|...|++. ...|+ ...+..+...+...|+++.|...+++..+..|.++..++.+..++...|++++|.+.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 8889999999888887 44554 446666777788899999999999988888888888899999999999999999999
Q ss_pred HHHHHHc
Q 036775 269 RDEIRRM 275 (293)
Q Consensus 269 ~~~m~~~ 275 (293)
|++....
T Consensus 490 ~~~Al~l 496 (615)
T TIGR00990 490 FDTAIEL 496 (615)
T ss_pred HHHHHhc
Confidence 9887663
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=3.6e-18 Score=134.52 Aligned_cols=257 Identities=13% Similarity=0.046 Sum_probs=113.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV 89 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (293)
.+...+.+.|++++|+++++...... .+|+.. .|..+...+...++.+.|.+.++.+.. . -+-+...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~-~-~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA-S-DKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-c-cccccccccccccc-c
Confidence 45778889999999999996654432 245544 444555567788999999999999987 2 22355667777777 7
Q ss_pred HcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 90 KCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
..+++++|.++++..-+ ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999987744 466778888999999999999999999987543 345777888889999999999999999
Q ss_pred HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
+++..+. .+.|......++..+...|+.+++.++++.. ....|...+..+..+|...|+.+.|...+++..+..|.
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 9999872 2335778889999999999999988888877 22345567888999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 245 SVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
|+.+...+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987654
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.75 E-value=1.2e-16 Score=130.16 Aligned_cols=271 Identities=13% Similarity=0.095 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH-HH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG-NA 83 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ 83 (293)
..+|..+...+-..|+++.|+.+++.+.+. .| ....|..+..++...|+.+.|.+.|....+ +.|+.... ..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcc
Confidence 467888888899999999999999998884 44 466788888888888888888877777655 33433222 22
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh----------------------------------hCCc---ccHHHHHHHHHhcCCHH
Q 036775 84 VINMYVKCGDVGIAIQVFNMLA----------------------------------YKDM---ISWSTVISGLAMNGCGR 126 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~----------------------------------~~~~---~~~~~li~~~~~~~~~~ 126 (293)
+...+-..|++++|...|.+.. +-|+ ..|-.|...|...+.++
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence 3333333455555555544444 3222 24445555555555555
Q ss_pred HHHHHHHHHHhCCCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHH
Q 036775 127 QALQLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIR 204 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 204 (293)
+|...|.+.... .|+ ...+..+...|-.+|.+|.|+..|++..+ ..|+ ...|+.|..++-..|++.+|.+.+.
T Consensus 270 ~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~---~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 270 RAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE---LQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh---cCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 555555544432 222 33444444445566777777777777765 2343 3567888888888888888888877
Q ss_pred hC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 205 EM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 205 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
.. ...|+ ....+.|...|...|.++.|..+|....+-.|.-...++.|...|-++|++++|...+++..+ ++|+-.
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fA 422 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFA 422 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHH
Confidence 76 33333 346677777788888888888888777777776677778888888888888888888877654 666655
Q ss_pred cceeeec
Q 036775 283 CSWIEVN 289 (293)
Q Consensus 283 ~~~~~i~ 289 (293)
-....++
T Consensus 423 da~~NmG 429 (966)
T KOG4626|consen 423 DALSNMG 429 (966)
T ss_pred HHHHhcc
Confidence 4443333
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=3.5e-14 Score=131.70 Aligned_cols=262 Identities=12% Similarity=0.023 Sum_probs=161.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH------------HHHHHhcccCcchHHHHHHHHHHhhc
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV------------NVLSACSSISALSFGQYVHSYISTRY 72 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~ 72 (293)
|...+..+..++.+.|++++|+..|++..+..+..++...|. .....+.+.|++++|...++++.+
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~-- 379 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ-- 379 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 667788888888888889999888888877431222211121 112345677888888888888877
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHH-----------------------------------
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWST----------------------------------- 114 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~----------------------------------- 114 (293)
..+.+...+..+...+...|++++|++.|++..+.+ ...+..
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l 459 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL 459 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 344556667778888888899999988888877532 112211
Q ss_pred -------HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH-
Q 036775 115 -------VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV- 186 (293)
Q Consensus 115 -------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 186 (293)
+...+...|++++|.+.|++..+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus 460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~a 536 (1157)
T PRK11447 460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYG 536 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 223345678888888888888776433 45667777778888888888888888876521 1222222222
Q ss_pred -------------------------------------------HHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHH
Q 036775 187 -------------------------------------------VDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACR 223 (293)
Q Consensus 187 -------------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 223 (293)
...+...|+.++|..+++.-+ ++...+..+...+.
T Consensus 537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~ 614 (1157)
T PRK11447 537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQ 614 (1157)
T ss_pred HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence 122333333333433333211 12223344444556
Q ss_pred hcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..|+.++|...+++..+..|.++..+..++..+...|++++|.+.++...
T Consensus 615 ~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666544
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=7.1e-14 Score=125.25 Aligned_cols=258 Identities=10% Similarity=0.000 Sum_probs=170.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+...|..+..++.. ++.++|+..|.+... ..|+......+...+...|++++|...++.+.. .+|+...+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~l 548 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAA 548 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHH
Confidence 45566666666655 677777777777665 345544433344445577778888777777644 24444455666
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS---GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
...+.+.|+.++|.+.+++..+.++...+.... .+.+.|++++|...|++..+. .|+...+..+..++.+.|+.+
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHH
Confidence 677777778888887777777654444333332 223347888888887777764 345667777777777788888
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
+|...+++..+ .-+.+...++.+..++...|++++|+..+++. ...| +...+..+..++...|++++|...+++..
T Consensus 627 eA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88887777775 22334556677777777778888887777776 4444 34466677777777788888888877777
Q ss_pred hhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 240 NKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
+..|.+..+.........+..+++.|.+-+++--
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 7777666666666666666777777776665543
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=8.7e-14 Score=129.08 Aligned_cols=261 Identities=9% Similarity=-0.029 Sum_probs=206.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMY 88 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 88 (293)
+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++.+.+ ..+.+...+..+...+
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P~~~~~~~a~al~l 539 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKPNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 4456677888999999999999998852 33466777888899999999999999999877 3444555566666677
Q ss_pred HHcCCHHHHHHHHHHhhhCC-------------cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 89 VKCGDVGIAIQVFNMLAYKD-------------MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
...++.++|+..++.+.... ...+..+...+...|+.++|..+++. .+.+...+..+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 88999999999999875421 11233456778899999999999882 2446667788888999
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchH
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDP 233 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 233 (293)
+.|+.++|...|+...+ .-+.+...+..++..|...|++++|++.++.. ...|+ ...+..+..++...|+.++|..
T Consensus 615 ~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999997 23456778899999999999999999999988 44444 4456677778899999999999
Q ss_pred HHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCCCC
Q 036775 234 IRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEIRR-MGLKKK 280 (293)
Q Consensus 234 ~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~ 280 (293)
+++.+....+.+ ...+..+...+...|++++|...|++... .|+.|.
T Consensus 693 ~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 693 TFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 999998865332 24666778889999999999999998753 456544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=5.2e-13 Score=118.88 Aligned_cols=268 Identities=9% Similarity=-0.035 Sum_probs=156.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
...+..+...+...|++++|+..+++..+. .+.+.. +..+..++...|+.++|...++++.+ ..|.+...+..+.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~--~~P~~~~~~~~la 157 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALP--RAPQTQQYPTEYV 157 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 444455555566666666666666666553 122333 55555555666666666666666655 2333334444444
Q ss_pred HHHHHcCCHHHHHHHHH----------------------------------------------Hhhh---CCcccHHH--
Q 036775 86 NMYVKCGDVGIAIQVFN----------------------------------------------MLAY---KDMISWST-- 114 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~----------------------------------------------~~~~---~~~~~~~~-- 114 (293)
..+...+..++|++.++ .+.+ .++.....
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 44444444443333332 2221 01111000
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--chhHHHHH
Q 036775 115 -----VISGLAMNGCGRQALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--QTQHYACV 186 (293)
Q Consensus 115 -----li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 186 (293)
.+.++...|++++|...|+++.+.+.. |+. .-..+..++...|++++|...|+.+.+.....+ .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 022344567778888888887776532 332 112245577788888888888888764211110 12345556
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCc-------------h---HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhH
Q 036775 187 VDMYGRAGLLEEAEAFIREM-PIEA-------------E---WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTF 249 (293)
Q Consensus 187 ~~~~~~~g~~~~a~~~~~~~-~~~~-------------~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (293)
..++...|++++|..+++.+ ...| + ...+..+...+...|+.++|...++++....|.++..+
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 66778888888888888777 2222 2 12334455567778888888888888888778888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 250 ALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 250 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
..+...+...|++++|++.+++..+ +.|+.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 8888888888888888888887665 44554
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=2.6e-13 Score=111.80 Aligned_cols=246 Identities=9% Similarity=0.040 Sum_probs=152.9
Q ss_pred cCCHHHHHHHHHHHHHccCCCchHHHH-HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH--HHHHHHHHcCCHH
Q 036775 19 RGFCEEAVSVFQEMEKTKEAEPNEATL-VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN--AVINMYVKCGDVG 95 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 95 (293)
.|++++|.+.+....+.. +++..+ .....+..+.|+++.+.+.+.++.+ .+|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHH
Confidence 488888887777655532 223333 2333445788888888888888865 445543332 3366778888888
Q ss_pred HHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCChhHHHH
Q 036775 96 IAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 96 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~ 165 (293)
+|.+.+++..+. +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 171 ~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 171 AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888888754 4556777888888888888888888888877655322 123333333334444555555
Q ss_pred HHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 166 LFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
+++.+-+ ..+.+......+...+...|+.++|..++++. +..|+... .++.+....++.+.+....+...+..|.
T Consensus 251 ~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 251 WWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555543 22345556666666777777777777766665 32333321 1223333446666666666666666666
Q ss_pred chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 245 SVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
|+..+..+...+.+.|++++|.+.|+...+
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 666666666666666666666666666655
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=4.1e-13 Score=120.48 Aligned_cols=231 Identities=10% Similarity=0.017 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISG 118 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~ 118 (293)
+...|..+..++.. ++..+|...+..... ..|+......+...+...|++++|...|+++.. ++...+..+..+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56677777777666 788889998887766 235544444555666789999999999998765 344556777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (293)
+.+.|+.++|...+++..+.... +...+..+.......|++++|...+++..+ ..|+...+..+..++.+.|++++
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 89999999999999999886522 333343444455567999999999999986 24678889999999999999999
Q ss_pred HHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 199 AEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 199 a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
|+..+++. ...|+ ...++.+...+...|+.++|...+++..+..|.++..+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~-- 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID-- 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--
Confidence 99999998 55665 446777777899999999999999999999999999999999999999999999999999876
Q ss_pred CCCCC
Q 036775 277 LKKKT 281 (293)
Q Consensus 277 ~~p~~ 281 (293)
+.|+.
T Consensus 706 l~P~~ 710 (987)
T PRK09782 706 DIDNQ 710 (987)
T ss_pred cCCCC
Confidence 44544
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=4.7e-14 Score=115.98 Aligned_cols=255 Identities=11% Similarity=-0.041 Sum_probs=187.0
Q ss_pred CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc----------------------------
Q 036775 21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRY---------------------------- 72 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 72 (293)
+..+|+..|...... +.-+......+.++|...+++++|+++|+.+.+..
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 345566666654442 22223344445555666666666666666655411
Q ss_pred ----CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775 73 ----DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145 (293)
Q Consensus 73 ----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 145 (293)
-.+..+.+|.++.++|+-.++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.......+ +-.
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYn 490 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYN 490 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhH
Confidence 23556788999999999999999999999998865 4578888888889999999999999988653222 223
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~ 223 (293)
.|--+...|.+.++++.|+-.|+...+ - -+-+......+...+.+.|+.++|++++++. ...| |+..-.--...+.
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~-I-NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVE-I-NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhc-C-CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 444556678899999999999999885 1 2345667778888999999999999999998 3333 3333344555677
Q ss_pred hcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 224 IHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
..+++++|...++++++..|.+..+|..+...|.+.|+.+.|..-|--+.+ +.|...
T Consensus 569 ~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~ 625 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGA 625 (638)
T ss_pred hhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccc
Confidence 889999999999999999999999999999999999999999988876655 444443
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=2.9e-12 Score=114.13 Aligned_cols=267 Identities=8% Similarity=-0.036 Sum_probs=193.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchH------------------------
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSF------------------------ 60 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~------------------------ 60 (293)
+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~ 192 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAA 192 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445 8888888999999999999999998853 2233444444444444444443
Q ss_pred ----------------------HHHHHHHHHhhcCCCCchh-HH----HHHHHHHHHcCCHHHHHHHHHHhhhCC--ccc
Q 036775 61 ----------------------GQYVHSYISTRYDLSVSNL-VG----NAVINMYVKCGDVGIAIQVFNMLAYKD--MIS 111 (293)
Q Consensus 61 ----------------------a~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~ 111 (293)
|.+.++.+.+.....|+.. .+ ...+..+...|++++|+..|+++.+.+ ...
T Consensus 193 ~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~ 272 (765)
T PRK10049 193 ELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP 272 (765)
T ss_pred HHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH
Confidence 3444444443111222221 11 111334567799999999999998653 122
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----------C
Q 036775 112 --WSTVISGLAMNGCGRQALQLFSLMIINGVFP---DDVTFIALISACSHGGLVDQGLILFKAMSTVYE----------I 176 (293)
Q Consensus 112 --~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~ 176 (293)
-..+..++...|++++|+..|+++.+..... .......+..++...|++++|.++++.+.+... -
T Consensus 273 ~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~ 352 (765)
T PRK10049 273 WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTS 352 (765)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCC
Confidence 2235778999999999999999987653221 134566677788999999999999999986211 0
Q ss_pred Ccc---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHH
Q 036775 177 VPQ---TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFAL 251 (293)
Q Consensus 177 ~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (293)
.|+ ...+..+...+...|++++|+++++++ ...| +...+..+...+...|+++.|+..+++.....|.+...+..
T Consensus 353 ~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~ 432 (765)
T PRK10049 353 IPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE 432 (765)
T ss_pred CCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence 122 234566788899999999999999998 3344 45578888888999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 036775 252 MSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++..+.+.|++++|..+++++.+
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.2e-12 Score=108.50 Aligned_cols=259 Identities=9% Similarity=-0.017 Sum_probs=165.0
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHH-HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCH
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEAT-LVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDV 94 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 94 (293)
..|+++.|.+.+.+..+ ..|++.. +-....+..+.|+.+.+.+.+....+ ..|+. .+.......+...|++
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~---~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE---LAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCcCchHHHHHHHHHHHHCCCH
Confidence 45889999888887766 3455433 33445567778899999998888766 22333 2334457778888999
Q ss_pred HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH---hcCCChhHHHHHHH
Q 036775 95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC---SHGGLVDQGLILFK 168 (293)
Q Consensus 95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~ 168 (293)
+.|.+.++.+.+. +......+...+...|++++|.+.+..+.+.++.++......-..++ ...+..+.+.+.+.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999988888753 55677788888899999999999999888876543322211111111 22222222233333
Q ss_pred Hhhhhc--CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHH-HHHHHH--HHhcCChhhchHHHHHHHhhc
Q 036775 169 AMSTVY--EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVW-GALLNA--CRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 169 ~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~-~~l~~~--~~~~~~~~~a~~~~~~~~~~~ 242 (293)
.+.+.. ..+.+...+..+...+...|+.++|.+++++. +..||.... ..++.. ....++.+.+...+++..+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333210 11236667777778888888888888888777 434544321 012222 334566777777777777777
Q ss_pred CCch--hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 243 GVSV--GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 243 ~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
|.++ ....++...+.+.|++++|.+.|+........|++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 7777 667777888888888888888887544444455554
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=2.4e-15 Score=118.53 Aligned_cols=230 Identities=12% Similarity=0.081 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHH
Q 036775 40 PNEATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTV 115 (293)
Q Consensus 40 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l 115 (293)
|+...+ .+...+.+.|++++|.+++..... .. .+.+...|..+.......++.+.|.+.++++... +...+..+
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~-~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l 84 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQ-KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 443333 556778899999999999966554 23 2445566667777888899999999999999865 44567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
+.. ...+++++|.+++.+..+. .++...+...+..+.+.++++++.++++.+......+.+...|..+...+.+.|+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 777 7899999999999887654 3566778888889999999999999999987644456677889999999999999
Q ss_pred hHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 196 LEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 196 ~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
.++|++.+++. ...|+ ......++..+...|+.+++..+++...+..+.++..+..+..++...|+.++|..+|++..
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999999998 55664 66788899999999999999999999998888888999999999999999999999999977
Q ss_pred H
Q 036775 274 R 274 (293)
Q Consensus 274 ~ 274 (293)
+
T Consensus 242 ~ 242 (280)
T PF13429_consen 242 K 242 (280)
T ss_dssp H
T ss_pred c
Confidence 6
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=4.8e-12 Score=104.40 Aligned_cols=254 Identities=9% Similarity=0.017 Sum_probs=197.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH--HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
|-....+..+.|+++.|.+.+.++.+ ..|+..... .....+...|+++.|.+.++.+.+ ..|.+......+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~--~~P~~~~al~ll~~ 195 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLE--VAPRHPEVLRLAEQ 195 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 43334555889999999999999987 567765444 335568899999999999999987 45667788899999
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCc-----------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 87 MYVKCGDVGIAIQVFNMLAYKDM-----------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
.|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.+-+. .+.+......+..++.
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHH
Confidence 99999999999999999986522 13444444444555667777777776433 2447788889999999
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchH
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDP 233 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 233 (293)
..|+.++|.+.+++..+ . +|+... .++.+....++.+++.+..+.. +..|+ ......+...|...+++++|..
T Consensus 275 ~~g~~~~A~~~L~~~l~-~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 275 ECDDHDTAQQIILDGLK-R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HCCCHHHHHHHHHHHHh-c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998875 2 455522 2344445669999999999888 44554 4467788888999999999999
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|+...+..| +..++..+..++.+.|+.++|.+++++-..
T Consensus 350 ~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 350 AFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999998765 567788999999999999999999987543
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=3.1e-12 Score=109.96 Aligned_cols=262 Identities=11% Similarity=-0.023 Sum_probs=180.8
Q ss_pred cchHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhc---------ccCcchHHHHHHHHH
Q 036775 4 RDVVSWTTMIGGYAE-----RGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACS---------SISALSFGQYVHSYI 68 (293)
Q Consensus 4 p~~~~y~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~ 68 (293)
++...|...+.+-.. .+++++|++.|++..+ ..|+ ...|..+..++. ..+++++|...++++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 456667777766432 2346799999999988 4454 344544443332 334578999999998
Q ss_pred HhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775 69 STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145 (293)
Q Consensus 69 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 145 (293)
.+ --|.+...+..+...+...|++++|...|++..+. +...+..+..++...|++++|...+++..+.... +..
T Consensus 331 l~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 331 TE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred Hh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 87 44557778888888999999999999999998764 3457888889999999999999999999887544 222
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNAC 222 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~ 222 (293)
.+..++..+...|++++|...++++.+ .. +| +...+..+..+|...|+.++|...++++ ...|+.. ..+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 333444456678899999999999875 22 34 3455777888899999999999999988 4455544 344445556
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
...| +.+...++.+.+.......-+..+-..+.-.|+-+.+..+ +++.+.|
T Consensus 486 ~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7777 4777777776664421111122244445555666666555 7776543
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.59 E-value=1.5e-12 Score=99.67 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=151.1
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
.....+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 33556677778888888888888888877653 3456777778888888888888888888776433 5566777777
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM 230 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 230 (293)
.+...|++++|.+.++...+....+.....+..+..++...|++++|...+++. ...| +...+..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 888888999999888888762222233456677788888899999999988887 3333 34567777788888999999
Q ss_pred chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
|...+++..+..+.++..+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999888877666777777888888889999999998887755
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=2.6e-12 Score=100.98 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
+..||..+|.++++-...+.|.+++++-.... .+.+..+||.+|.+-+-. ...++..+|.. ..+.||..++|++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~----~~K~Lv~EMis-qkm~Pnl~TfNal 279 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYS----VGKKLVAEMIS-QKMTPNLFTFNAL 279 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhh----ccHHHHHHHHH-hhcCCchHhHHHH
Confidence 44555666666666655666666666555444 455555565555543211 11445555555 4555666666666
Q ss_pred HHHHHHcCCHHHHHH----HHHHhh----hCCcccHHHHHHHHHhcCCH
Q 036775 85 INMYVKCGDVGIAIQ----VFNMLA----YKDMISWSTVISGLAMNGCG 125 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~----~~~~~~----~~~~~~~~~li~~~~~~~~~ 125 (293)
+++..+.|+++.|.+ ++.+|+ +|...+|..+|..+++.++.
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 666666555544332 222332 23444444444444444444
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=7.3e-14 Score=114.88 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=181.8
Q ss_pred cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------------------------
Q 036775 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----------------------------- 107 (293)
Q Consensus 57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------------------- 107 (293)
+..+|...|..... .+.-+..+...+..+|...+++++|+++|+.+.+.
T Consensus 334 ~~~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 56778888888554 34444466678899999999999999999988632
Q ss_pred --------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc
Q 036775 108 --------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ 179 (293)
Q Consensus 108 --------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 179 (293)
.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+-.-+.....+|.|...|+.... +.|.
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 4578999999999999999999999999875432 678898888888899999999999999874 2332
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775 180 -TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF 256 (293)
Q Consensus 180 -~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 256 (293)
-..|.-|.-.|.+.++++.|+-.|++. .+.|. .+....+...+.+.|+.++|+++++++...+|.++.+--..+..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 345666788899999999999999998 67774 445555666689999999999999999999999998888888999
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775 257 AGADRWEDANKIRDEIRRMGLKKKTGCS 284 (293)
Q Consensus 257 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 284 (293)
...+++++|...++++++ +.|+....
T Consensus 568 ~~~~~~~eal~~LEeLk~--~vP~es~v 593 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKE--LVPQESSV 593 (638)
T ss_pred HhhcchHHHHHHHHHHHH--hCcchHHH
Confidence 999999999999999987 66766543
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.57 E-value=1e-14 Score=82.51 Aligned_cols=50 Identities=34% Similarity=0.585 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 54 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 54 (293)
||+.+||++|.+|++.|++++|+++|++|.+.| ++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 99999999999999874
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=4.3e-12 Score=97.12 Aligned_cols=196 Identities=12% Similarity=0.024 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
....+..+...+...|++++|.+.+++..+ ..+.+...+..+...+...|++++|.+.+++..+. +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE--HDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 344555566666666666666666666655 23344555566666666666666666666666542 3344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
.+...|++++|.+.+++.......| ....+..+..++...|++++|...+++..+ ..+.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCH
Confidence 6666667777777766665532211 233455555666667777777777766664 1223344566666666777777
Q ss_pred HHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 197 EEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 197 ~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
++|...+++. ...| +...+..+...+...|+.+.+..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777766665 2222 333444555556666777776666655544
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=3.2e-11 Score=106.45 Aligned_cols=262 Identities=9% Similarity=0.006 Sum_probs=186.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
...+...|++++|+++|+++.+.. +-|+..+..++..+...++.++|.+.++.+.+ ..|+...+..++..+...+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~---~dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAE---RDPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc---cCcchHHHHHHHHHHHhcc
Confidence 456777788888888888887753 33355556667777888888888888888765 3444444544444444455
Q ss_pred CHHHHHHHHHHhhhCCc---------------------------------------------------------------
Q 036775 93 DVGIAIQVFNMLAYKDM--------------------------------------------------------------- 109 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~--------------------------------------------------------------- 109 (293)
+..+|++.++++.+.++
T Consensus 184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 55557777776652100
Q ss_pred ---------------------c----cHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 110 ---------------------I----SWS----TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 110 ---------------------~----~~~----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
. .|. -.+-++...|+..++++.|+.+...|.+....+-..+..+|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 0 000 12334556778888888888888888766667888889999999999
Q ss_pred hHHHHHHHHhhhhcC----CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCC-C-------------c--hHhH-HHHHH
Q 036775 161 DQGLILFKAMSTVYE----IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI-E-------------A--EWSV-WGALL 219 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-------------~--~~~~-~~~l~ 219 (293)
++|..+++.+....+ .+++......|..+|...+++++|..+++.+.. . | |... ...++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 999999999865321 123444457788999999999999999988821 1 2 2222 33345
Q ss_pred HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
..+...|+...|++.++.+....|.|......+...+...|.+.+|.+.++.... +.|+.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~ 483 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRS 483 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCcc
Confidence 5578899999999999999888899999999999999999999999999976554 35554
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=7.2e-12 Score=98.56 Aligned_cols=270 Identities=13% Similarity=0.174 Sum_probs=187.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHH-HHHHHHHHhh-----------
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFG-QYVHSYISTR----------- 71 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a-~~~~~~~~~~----------- 71 (293)
+.+=|.|++ ....|.+..+.-+|+.|+..| .+.++..-..+++. |-...+.--+ .+-|-.|...
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345566666 566889999999999999988 77777665555554 2222221111 1122222210
Q ss_pred -------cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775 72 -------YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGV 140 (293)
Q Consensus 72 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 140 (293)
.-.|.+..++.++|.++|+-...+.|.+++++.... +..+||.+|.+-.-.. ..+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 134667889999999999999999999999988754 6677888887654333 2789999999999
Q ss_pred CCcHhHHHHHHHHHhcCCChhH----HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH-HHHHHHhC---------
Q 036775 141 FPDDVTFIALISACSHGGLVDQ----GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE-AEAFIREM--------- 206 (293)
Q Consensus 141 ~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~--------- 206 (293)
+||..|||+++.+..+.|+++. |.+++.+|++ -|+.|...+|..+|..+++.++..+ |..++.++
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 9999999999999999998765 5678888887 7999999999999999888777644 44444443
Q ss_pred -CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-----CCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 207 -PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-----GVSV---GTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 207 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
...| |...+..-+..|.+..+.+.|.++-.-+..+. +++. .-|..+..+.+.....+.....|+.|.-.-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2334 34466777777888888888887776666543 3321 124455555666666666666666665544
Q ss_pred CCCCCc
Q 036775 277 LKKKTG 282 (293)
Q Consensus 277 ~~p~~~ 282 (293)
+-|++.
T Consensus 429 y~p~~~ 434 (625)
T KOG4422|consen 429 YFPHSQ 434 (625)
T ss_pred ecCCch
Confidence 444444
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=2e-14 Score=81.24 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=40.3
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 107 KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56778888888888888888888888888888888888888888887764
No 38
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.54 E-value=8.3e-12 Score=103.34 Aligned_cols=232 Identities=13% Similarity=0.081 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhh----cC-CCCchhH-HHHHHHHHHHcCCHHHHHHHHHHhhhC--------
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTR----YD-LSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYK-------- 107 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 107 (293)
..+...+...|...|+++.|..++++.... .| ..|...+ .+.+...|...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777776651 12 1233322 244667788888888888888877631
Q ss_pred ---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-CcH-hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC--
Q 036775 108 ---DMISWSTVISGLAMNGCGRQALQLFSLMII-----NGVF-PDD-VTFIALISACSHGGLVDQGLILFKAMSTVYE-- 175 (293)
Q Consensus 108 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-- 175 (293)
-..+++.|..+|.+.|++++|...+++..+ .|.. |.+ .-++.+...++..+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 224577777788888888888777776543 1222 222 3456666778888999999988887654221
Q ss_pred CCc----chhHHHHHHHHHHhcCChHHHHHHHHhC---------CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775 176 IVP----QTQHYACVVDMYGRAGLLEEAEAFIREM---------PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 176 ~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (293)
..+ -..+++.|...|...|++++|.+++++. +..+. ...++.+...|.+.+.+..|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2367899999999999999999999887 11222 346777888899999999898888765542
Q ss_pred ----c---CCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 242 ----K---GVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 242 ----~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
+ |....+|..|+..|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 3345689999999999999999999988765
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.2e-11 Score=98.05 Aligned_cols=164 Identities=5% Similarity=-0.021 Sum_probs=139.1
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
.+.|+..+.+-|+-.++.++|...|++..+.+.. ....|+.+..-|...++...|.+-++...+ -.+.|-..|-.|.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLG 405 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLG 405 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhh
Confidence 4567777778888888999999999999887654 567788888889999999999999999886 3456778899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHH
Q 036775 188 DMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDA 265 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 265 (293)
.+|.-.+...-|+-.|++. ..+| |...|.+|..+|.+.++.++|...|+.....+..+...+..|...|-+.++.++|
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988 5555 5668999999999999999999999999888877888899999999999999999
Q ss_pred HHHHHHHHH
Q 036775 266 NKIRDEIRR 274 (293)
Q Consensus 266 ~~~~~~m~~ 274 (293)
...|+.-.+
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 988887654
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.8e-12 Score=102.57 Aligned_cols=270 Identities=11% Similarity=-0.060 Sum_probs=220.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
|+..--.-.+-+...+++.+..++++..... .+++...+..-|.++...|+..+-..+-.++.. ..|..+.+|-++
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhH
Confidence 4444455566777889999999999999887 467777777778888999999888888888887 678888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
...|...|...+|.+.|.+...-| ...|-.....|+-.|..++|+..|....+.=.. ....+.-+.--|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence 999999999999999999877544 457999999999999999999999887653111 1122233344578899999
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCc-hHhHHHHHHHHHHhcCChhhch
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--------PIEA-EWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
.|.++|.+... -.+.|+.+.+-+.-.....+.+.+|..+|+.. +..+ -..+++.|.++|.+.+.+++|.
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999884 44567788888888888899999999999876 1112 3457888999999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 036775 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 283 (293)
..+++.....|.++.+|..+.-.|...|+++.|.+.|.+-. .+.|+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~ 524 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIF 524 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHH
Confidence 99999999999999999999999999999999999998754 47777643
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=3e-11 Score=100.18 Aligned_cols=258 Identities=12% Similarity=0.004 Sum_probs=185.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
|-....+..+.|+.+.|.+.+.+..+. .|+.. .-......+...|+++.|...++.+.+ ..|.+..+...+..
T Consensus 121 ~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~--~~P~~~~~l~ll~~ 195 (409)
T TIGR00540 121 LIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAARHGVDKLLE--MAPRHKEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344456788889999999999998763 45543 333457778889999999999999988 44667778899999
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CcccHHH----HHHHHHhcCCHHHHHHHHHHHHhCCC---CCcHhHHHHHHHHHhc
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK---DMISWST----VISGLAMNGCGRQALQLFSLMIINGV---FPDDVTFIALISACSH 156 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~ 156 (293)
.+...|++++|.+.++...+. +...+.. ........+..+++.+.+..+.+... +.+...+..+...+..
T Consensus 196 ~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~ 275 (409)
T TIGR00540 196 AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID 275 (409)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999865 2222321 11122333333334445555554322 1377888899999999
Q ss_pred CCChhHHHHHHHHhhhhcCCCcchhH---HHHHHHHHHhcCChHHHHHHHHhC-CCCchH---hHHHHHHHHHHhcCChh
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQTQH---YACVVDMYGRAGLLEEAEAFIREM-PIEAEW---SVWGALLNACRIHRNDE 229 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~~ 229 (293)
.|+.++|.+.+++..+. .|+... ...........++.+.+.+.++.. ...|+. ....++...+.+.|+++
T Consensus 276 ~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 276 CDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred CCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 99999999999999862 233321 122222233457788888888777 334433 45667888899999999
Q ss_pred hchHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 230 MFDPIRQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 230 ~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+|...|+...... .|++..+..+...+.+.|+.++|.+++++-..
T Consensus 353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999533322 45666788999999999999999999997543
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=5.7e-11 Score=90.27 Aligned_cols=263 Identities=12% Similarity=0.067 Sum_probs=179.1
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHHHHcCC
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYVKCGD 93 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 93 (293)
+.-+.+.++|+++|-+|.+. -+-+..+..++.+.+.+.|..+.|.++.+.+....+.+.+.. ....|..-|...|-
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 33457889999999999874 244455667788889999999999999999877333333322 23567788889999
Q ss_pred HHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCCChhHHHHH
Q 036775 94 VGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 94 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
+|.|+.+|..+.+. -......|+..|-..++|++|+++-+++.+.|..+.. ..|..+...+....+++.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999988764 3345667888888889999999988888877655432 3456666666677778888888
Q ss_pred HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH--hHHHHHHHHHHhcCChhhchHHHHHHHhhc-
Q 036775 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW--SVWGALLNACRIHRNDEMFDPIRQELVNKK- 242 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 242 (293)
+.+..+. . +-.+..--.+.+.+...|+++.|.+.++.. ...|+. .+...|..+|.+.|+.++...++....+..
T Consensus 203 l~kAlqa-~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 203 LKKALQA-D-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHhh-C-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8777652 1 222333334667777788888888888777 334443 356667777788887777776666554422
Q ss_pred -------------------------------CCchhhHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 243 -------------------------------GVSVGTFALMSNTFAG---ADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 243 -------------------------------~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
.|+...+..|+..... .|+..+....++.|....++.++.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 2344455556655442 355677777777777665554443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.6e-11 Score=96.27 Aligned_cols=248 Identities=15% Similarity=0.070 Sum_probs=184.4
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (293)
.-...++++|+++|+++.++.+.+. |..+|+.++-+-.....+.--.+....+ ... -+.|+.++.+-|+-.++.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i---dKy--R~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI---DKY--RPETCCIIANYYSLRSEH 346 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh---ccC--CccceeeehhHHHHHHhH
Confidence 3345678888888888877654433 3567776665433222221111111111 223 344667888889999999
Q ss_pred HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 95 GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 95 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
++|...|++..+- ....|+.+.+-|...++...|.+.|+...+-+.. |-..|-.+..+|.-.+...-|+-+|++..
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999999865 4567999999999999999999999999987554 88899999999999999999999999998
Q ss_pred hhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCc
Q 036775 172 TVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK----GVS 245 (293)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~ 245 (293)
. -.+-|...|.+|..+|.+.++.++|+..|++. ....+...+..|...|-+.++..+|...+++-.+.. ..+
T Consensus 426 ~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 E--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred h--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 6 33557889999999999999999999999998 223455789999999999999999999998766522 222
Q ss_pred h---hhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 246 V---GTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 246 ~---~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
+ ..-..|..-+.+.+++++|..+...
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 2 2333466667777777777665443
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=3.3e-11 Score=95.75 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=172.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH-HHHHh----------------------------------cccCcc
Q 036775 14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN-VLSAC----------------------------------SSISAL 58 (293)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-ll~~~----------------------------------~~~~~~ 58 (293)
..+.+.|+++.|+++++-+.+......+...-+. .+... ...|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 3578899999999999988775422222111111 11111 123566
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh---hCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDMISWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
++|.+.+++... ....-....| .+.-.+-..|++++|+.+|-++. ..+..+.-.+.+.|-...++..|++++-+.
T Consensus 507 dka~~~ykeal~-ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALN-NDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHc-CchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 666666666544 1111112222 22334555677777777775543 235555666667777777777777777665
Q ss_pred HhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhH
Q 036775 136 IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSV 214 (293)
Q Consensus 136 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 214 (293)
... ++-|+.....|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++++.+|++. -+.|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 443 444677788888889999999999988776654 45678888888888888999999999999998 57899999
Q ss_pred HHHHHHHH-HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 215 WGALLNAC-RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 215 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
|..++..| .+.|+++.|..+++...+..|-+..+...|++.+...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99988875 788999999999999999999999999999999998875
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=2.5e-10 Score=86.82 Aligned_cols=195 Identities=12% Similarity=0.077 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH--HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA--TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+--+|-+.|.+.|.++.|+.+-+.+.++.+.+-+.. ...-+..-|...|-++.|+.+|..+.....+. ......|+
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa--~~AlqqLl 148 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA--EGALQQLL 148 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh--HHHHHHHH
Confidence 344566788899999999999999887643333333 33345566889999999999999987732233 33447889
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHH--------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWS--------TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 157 (293)
..|....+|++|+++-+++.+.+...|+ -+...+....+.+.|..++.+..+.+.+ .+..-..+-......
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~ 227 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAK 227 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhc
Confidence 9999999999999999988876554444 4445555678899999999998877544 444445566778889
Q ss_pred CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
|+++.|.+.++...+ .+..--..+...|..+|...|+.++...++.++
T Consensus 228 g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 228 GDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred cchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999887 454444567888899999999999998888776
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=4.2e-10 Score=87.94 Aligned_cols=264 Identities=10% Similarity=0.050 Sum_probs=192.2
Q ss_pred HHHHHHH--cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775 12 MIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV 89 (293)
Q Consensus 12 li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (293)
+..+..+ .|+|.+|.++..+-.+.+ +-....|..-..+.-+.|+.+.+...+.++.+ ..-.++....-+......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae-~~~~~~l~v~ltrarlll 164 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE-LAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHH
Confidence 4444443 589999999999877654 22334555666778889999999999999877 444566666777888888
Q ss_pred HcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH-------hHHHHHHHHHhcCCC
Q 036775 90 KCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD-------VTFIALISACSHGGL 159 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~ 159 (293)
..|+++.|..-.++..+ ..+.......++|.+.|++.++..++..|.+.|.--++ .+|..++.-....+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999988887764 36778888999999999999999999999998876544 356666666666666
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---------------------------------
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--------------------------------- 206 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------------------------------- 206 (293)
.+.-.+.|+..-+ ..+-++..-.+++.-+.+.|+.++|.++.++.
T Consensus 245 ~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 245 SEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred chHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 6666666666654 33444555556666777777777777766543
Q ss_pred CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 207 PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 207 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
....++..+.+|...|.+++.+.+|...|+...+. .++..+|+.+..++.+.|+..+|.+++++-...-.+|+.
T Consensus 323 ~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 323 QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 01123345777777788888888888888855553 447788888888888888888888888876654445544
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.45 E-value=4.9e-11 Score=102.61 Aligned_cols=228 Identities=8% Similarity=-0.084 Sum_probs=170.1
Q ss_pred CchHHHHHHHHHHhc-----ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH---------cCCHHHHHHHHHHh
Q 036775 39 EPNEATLVNVLSACS-----SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK---------CGDVGIAIQVFNML 104 (293)
Q Consensus 39 ~p~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~ 104 (293)
+.+...|...+++-. ..+++++|...+++..+ ..|.+...|..+..++.. .+++++|...+++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 344555666666531 22456789999999876 334455566666655542 24489999999998
Q ss_pred hhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-h
Q 036775 105 AYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-T 180 (293)
Q Consensus 105 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 180 (293)
.+. +..++..+...+...|++++|...|++..+.++. +...+..+..++...|++++|...+++..+. .|+ .
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~ 406 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRA 406 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCh
Confidence 864 5567888888899999999999999999987543 5667888888999999999999999999863 343 2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM--PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
..+..++..+...|++++|...+++. ...|+ ...+..+..++...|+.++|...++++....+.+....+.+...|.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 33344455677789999999999887 22354 3346667777889999999999999987777766777788888888
Q ss_pred cCCCHHHHHHHHHHHHH
Q 036775 258 GADRWEDANKIRDEIRR 274 (293)
Q Consensus 258 ~~g~~~~a~~~~~~m~~ 274 (293)
..| ++|...++.+.+
T Consensus 487 ~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 487 QNS--ERALPTIREFLE 501 (553)
T ss_pred ccH--HHHHHHHHHHHH
Confidence 888 478887777765
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=5.3e-10 Score=98.89 Aligned_cols=259 Identities=11% Similarity=0.019 Sum_probs=164.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK 90 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 90 (293)
.++..+...|+.++|+..+++.... .+........+...+...|++++|.++++.+.+ ..|.+...+..++..+..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~--~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWDQALALWQSSLK--KDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHhh
Confidence 6666677777777777777776521 122223333334566677788888888888776 444455666677777777
Q ss_pred cCCHHHHHHHHHHhhhCCcccHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHH-----
Q 036775 91 CGDVGIAIQVFNMLAYKDMISWSTVISGLAM--NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQG----- 163 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a----- 163 (293)
.++.++|++.++++...+......+..++.. .++..+|++.++++.+.... +...+..+..++.+.|-...|
T Consensus 149 ~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 149 AGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred cCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 7888888888877776544332223333333 45555588888888776432 444555555555544432222
Q ss_pred -------------------------------------------HHHHHHhhhhcCCCcch-hHH----HHHHHHHHhcCC
Q 036775 164 -------------------------------------------LILFKAMSTVYEIVPQT-QHY----ACVVDMYGRAGL 195 (293)
Q Consensus 164 -------------------------------------------~~~~~~~~~~~~~~~~~-~~~----~~l~~~~~~~g~ 195 (293)
+.-++.+....+-.|.. ..| --.+.++...|+
T Consensus 228 ~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 228 ENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred hCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 22222222211111321 111 233456778899
Q ss_pred hHHHHHHHHhCCCCc---hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc------CCchhhHHHHHHHHhcCCCHHHHH
Q 036775 196 LEEAEAFIREMPIEA---EWSVWGALLNACRIHRNDEMFDPIRQELVNKK------GVSVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 196 ~~~a~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~ 266 (293)
..++++.++.++..+ -..+-..+..+|...+.+++|..+++.+.... +++......|..++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 999999999994222 12245667888999999999999999987654 223444678999999999999999
Q ss_pred HHHHHHHH
Q 036775 267 KIRDEIRR 274 (293)
Q Consensus 267 ~~~~~m~~ 274 (293)
.+++.+.+
T Consensus 388 ~~l~~~~~ 395 (822)
T PRK14574 388 QFAVNYSE 395 (822)
T ss_pred HHHHHHHh
Confidence 99999987
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.6e-11 Score=93.41 Aligned_cols=223 Identities=8% Similarity=-0.063 Sum_probs=164.7
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhc
Q 036775 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMN 122 (293)
Q Consensus 46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~ 122 (293)
+-+.++|.+.|.+.+|.+.++...+ -.|-+.+|..|-..|.+..+.+.|+.+|.+..+. |+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 3456677777888888777777655 3455666777777788888888888888777653 333344456667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 036775 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 202 (293)
++.++|.++|+...+... .++....++...|.-.++.+-|..+++++.+ .|+ .+...|+.+.-+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888888887776533 3666777777777778888888888888877 454 4566677777777778888888877
Q ss_pred HHhC---CCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 203 IREM---PIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 203 ~~~~---~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
|++. -..| -...|..+-......|++..|.+.|+.....++.+...++.|...-.+.|++++|..+++....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7776 1123 2346777777778888999999999888888888888999999889999999999999987655
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=7.4e-12 Score=106.43 Aligned_cols=241 Identities=11% Similarity=0.053 Sum_probs=146.6
Q ss_pred HHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775 27 SVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 27 ~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
.++-.+...| +.||..||..+|.-|+..|+.+.|- +|..|+. ...+.+...++.++.+....++.+.+. +
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-------e 80 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-------E 80 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-------C
Confidence 3456677777 8999999999999999999999888 8888888 678888888899998888888877665 6
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHH-HH-------hCCCCCcHhHHHHHHHH--------------HhcCCChhHHH
Q 036775 107 KDMISWSTVISGLAMNGCGRQALQLFSL-MI-------INGVFPDDVTFIALISA--------------CSHGGLVDQGL 164 (293)
Q Consensus 107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~-m~-------~~g~~p~~~~~~~ll~~--------------~~~~~~~~~a~ 164 (293)
|...+|+.|..+|.++||... ++..++ |. ..|+..-+.-|-..+.+ ..-.|-++.+.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 778889999999999998765 222222 21 22332111222111111 11222333333
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHh-cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGR-AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK- 242 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 242 (293)
+++..+-......|... +++-... ...+++-..+-+.....|+..++..++.+-...|+.+.|..++..|.+.+
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 33322221011111111 1222211 12233333333333225777777777777777777777777777777665
Q ss_pred CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285 (293)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 285 (293)
|..+.-|-.|+-+ .++..-+..+++-|++.|+.|+..++-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 5555555555544 666777777777777777777777654
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.43 E-value=5.3e-10 Score=95.55 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=84.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775 179 QTQHYACVVDMYGRAGLLEEAEAFIREMP---IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT 255 (293)
Q Consensus 179 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 255 (293)
+...|.-+.++|...|++.+|+.+|..+- ...+...|-.+..+|...|.++.|...++......|.+...-..|...
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl 492 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASL 492 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHH
Confidence 34568888899999999999999999992 223466899999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHH
Q 036775 256 FAGADRWEDANKIRDEIR 273 (293)
Q Consensus 256 ~~~~g~~~~a~~~~~~m~ 273 (293)
+.+.|+.++|.+++..|.
T Consensus 493 ~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 493 YQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCCHHHHHHHHhccc
Confidence 999999999999998875
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.43 E-value=3.2e-10 Score=93.87 Aligned_cols=270 Identities=11% Similarity=0.047 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
.|-.....+-..|++..|..++...... .+.+...|...+..-....+++.|..+|.+.. +..|+..+|.--+..
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANL 660 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHH
Confidence 3444444444555555555555555443 22334455555555555555555555555542 244444444444444
Q ss_pred HHHcCCHHHHHHHHHHhh----------------------------------hC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775 88 YVKCGDVGIAIQVFNMLA----------------------------------YK---DMISWSTVISGLAMNGCGRQALQ 130 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~----------------------------------~~---~~~~~~~li~~~~~~~~~~~a~~ 130 (293)
---.+..++|.+++++.. +. .+..|-.|...--+.|++-.|..
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ 740 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS 740 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence 444444555555444443 22 33456566666666667777777
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 036775 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210 (293)
Q Consensus 131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 210 (293)
++++.+-.++. +...|...|..-.+.|..+.|..+..+..+ .++.+...|..-|....+.++-.++.+.+++....|
T Consensus 741 ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp 817 (913)
T KOG0495|consen 741 ILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP 817 (913)
T ss_pred HHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc
Confidence 77776665554 666777777777777777777777766665 455555666666666666666666666666665444
Q ss_pred hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccceeeec
Q 036775 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWIEVN 289 (293)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~~i~ 289 (293)
.+ .-.+...+-....++.|...|.+..+.+|.+-.+|..+..-+.+.|.-++-.++++.... -.|..+..|+.+.
T Consensus 818 hV--llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 818 HV--LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 43 344555577788899999999999999999999999999999999999999999987765 5788887776553
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2e-11 Score=92.93 Aligned_cols=228 Identities=11% Similarity=0.005 Sum_probs=191.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV 89 (293)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (293)
+-+-.+|.+.|-+.+|.+-|+...+ ..|-+.||..+-++|.+..+...|..++.+-.+ ..|.++.........+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHH
Confidence 4567889999999999999999888 568888999999999999999999999999876 56666655577788888
Q ss_pred HcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 90 KCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
..++.++|.++|+...+. ++.....+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999988764 5666667777888899999999999999999987 888999999999999999999999
Q ss_pred HHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 167 FKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 167 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
|++... .--.|+ ..+|..+.......|++.-|.+.|+-. ....+...++.|.-.-.+.|+++.|..+++......
T Consensus 381 f~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 998876 222343 356888888888999999999999887 334456688888888899999999999998887766
Q ss_pred CC
Q 036775 243 GV 244 (293)
Q Consensus 243 ~~ 244 (293)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 53
No 54
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.40 E-value=1.8e-09 Score=89.54 Aligned_cols=270 Identities=11% Similarity=-0.019 Sum_probs=225.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
-.||+.-.+.|.+.+.++-|..+|....+- .+-+...|.-....--..|..++...+++.+.. .+|.....|....
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~a 591 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYA 591 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHH
Confidence 357888888999999999999999998885 455567777777777778899999999999988 6777888888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
.-+...|++..|..++.+.-+. +...|..-+.....+..++.|..+|.+... ..|+...|..-+....-.++.++
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHH
Confidence 8999999999999999988764 566898999999999999999999998876 46677777777777778899999
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
|.+++++..+ .++.=...|..+...+.+.++.+.|...|..- +.-|+.. .|-.|...--+.|+.-.|..++++..-
T Consensus 670 A~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 670 ALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999999986 44444567888899999999999999988776 5556554 677777777788899999999999999
Q ss_pred hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCccce
Q 036775 241 KKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSW 285 (293)
Q Consensus 241 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 285 (293)
.+|.+...|...|++-.+.|+.+.|..++-+..+. =|+.+..|
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LW 790 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLW 790 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhH
Confidence 99999999999999999999999999988765442 35555555
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=2.2e-09 Score=85.08 Aligned_cols=220 Identities=8% Similarity=-0.079 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775 21 FCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (293)
+.+.++.-+.++.......|+ ...|..+...+...|+.+.|...|++..+ ..|.+...|+.+...+...|++++|.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALA--LRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345566666666543222232 23455555566667777777777776665 33445566677777777777777777
Q ss_pred HHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775 99 QVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175 (293)
Q Consensus 99 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 175 (293)
+.|++..+. +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...++.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 777766543 33456666666666777777777777766543 2222111112223345566777777755443 2
Q ss_pred CCcchhHHHHHHHHHHhcCChHHH--HHHHHhC-CCC----c-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775 176 IVPQTQHYACVVDMYGRAGLLEEA--EAFIREM-PIE----A-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247 (293)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~g~~~~a--~~~~~~~-~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (293)
.+|+...+ .+ .+...|+..++ ...+.+. ... | ....|..+...+...|+.++|...|++..+..|++..
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 22322211 12 22223444332 2222111 111 1 2235666666667777777777777777666655443
Q ss_pred hH
Q 036775 248 TF 249 (293)
Q Consensus 248 ~~ 249 (293)
-+
T Consensus 272 e~ 273 (296)
T PRK11189 272 EH 273 (296)
T ss_pred HH
Confidence 33
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=8.7e-10 Score=87.34 Aligned_cols=213 Identities=11% Similarity=-0.025 Sum_probs=153.3
Q ss_pred CcchHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775 56 SALSFGQYVHSYISTRYDLSVS--NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQ 130 (293)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 130 (293)
+..+.+..-+.++.......|+ ...|..+...|.+.|+.++|...|++..+. +...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556667777777652223332 355788888999999999999999998864 56789999999999999999999
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CC
Q 036775 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PI 208 (293)
Q Consensus 131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~ 208 (293)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...++.++|...|++. ..
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999876433 4677888888899999999999999999862 343322222223345678899999999765 22
Q ss_pred CchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNK-------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.|+. |. ........|+...+ ..++.+.+. .+.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3332 22 12223345665544 344555432 23345689999999999999999999999988754
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=6.9e-09 Score=88.99 Aligned_cols=265 Identities=9% Similarity=0.031 Sum_probs=187.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+..--.........|+.++|.+++.+..+. .+.+...|..|...|-..|+.+++...+-.+.. -.|.|...|..+.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~la 214 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHH
Confidence 333333444445559999999999999887 466778899999999999999999887766654 6667888999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCC
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWS---TVISGLAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGG 158 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~ 158 (293)
....+.|+++.|.-+|.+..+.++.-|. --+..|-+.|+...|...|.++.....+.|- .+.-..+..+...+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~ 294 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN 294 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999875444333 3456788889999999999988876442222 22333455566667
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--------------------------------
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-------------------------------- 206 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------------------------------- 206 (293)
+.+.|.+.++....+.+-..+...++.++..|.+...++.|......+
T Consensus 295 ~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~ 374 (895)
T KOG2076|consen 295 ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKEL 374 (895)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCC
Confidence 777788777777653333444556666666666666666665544322
Q ss_pred --------------------------------C--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC-CchhhHHH
Q 036775 207 --------------------------------P--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG-VSVGTFAL 251 (293)
Q Consensus 207 --------------------------------~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 251 (293)
. ..-++..|.-+..++...|.+..|..++..+....+ .+...|-.
T Consensus 375 s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 375 SYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred CccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 0 011233456666677788888888888888777663 34567888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH
Q 036775 252 MSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+..+|...|.+++|.+.|+....
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888888888888888887665
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=8.4e-09 Score=80.83 Aligned_cols=227 Identities=10% Similarity=0.004 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|..-..+--+.|+.+.+-.++.+..+.. -.++.....+..+.....|+...|..-..++.+ --+.++.+......
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~--~~pr~~~vlrLa~r 195 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARENVDQLLE--MTPRHPEVLRLALR 195 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHH--hCcCChHHHHHHHH
Confidence 345555566667778888888877776632 233444445555557777777777777777765 33445556677777
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---------------------------------------------CcccHHHHHHHHHh
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK---------------------------------------------DMISWSTVISGLAM 121 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~---------------------------------------------~~~~~~~li~~~~~ 121 (293)
+|.+.|++.....++.++.+. ++..--+++.-+.+
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 788888877777777776532 33445566777788
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 201 (293)
.|+.++|.++..+..+.+..|+ ....-.+.+.++.+.-++..+.-....+. ++..+.+|...|.+.+.|.+|..
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~ 349 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASE 349 (400)
T ss_pred cCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999988877666 23333566778887777777776653443 44678899999999999999999
Q ss_pred HHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 202 FIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 202 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
.|+.. +..|+..+|+.+.+++.+.|+..+|.+..++.....
T Consensus 350 ~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 350 ALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99987 778999999999999999999999999998877543
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=9.5e-10 Score=88.17 Aligned_cols=215 Identities=9% Similarity=-0.033 Sum_probs=176.2
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQA 128 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 128 (293)
+.-.|+...+..-|+...+ ..+.+...|--+...|....+.++....|+....- +..+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~--l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIK--LDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHh--cCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHH
Confidence 4556888899999999887 33334444777888899999999999999988753 678899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 036775 129 LQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P 207 (293)
Q Consensus 129 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~ 207 (293)
..=|++....... +...|..+--+.-+.++++++...|++.++ .++--+++|+.....+...+++++|.+.|+.. .
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999876443 567777777777899999999999999996 56667789999999999999999999999887 3
Q ss_pred CCch---------HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 208 IEAE---------WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 208 ~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
+.|. +...-.++. +.-.+++..|..++++..+.+|.....|..|...-.+.|+.++|+++|++-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3443 111112221 224489999999999999999999999999999999999999999999864
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.31 E-value=2.1e-10 Score=97.86 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=166.4
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
.||.+||..+|.-|+..|+.+.|- +|.-|.-.. .+.+...++.++..+...++.+.+. .|...+|+
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------------ep~aDtyt 87 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------------EPLADTYT 87 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC------------CCchhHHH
Confidence 488999999999999999999998 999988777 8889999999999999999887654 68888999
Q ss_pred HHHHHHHHcCCHHH---HHHHHHHhhhC-------Cc---------------ccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 83 AVINMYVKCGDVGI---AIQVFNMLAYK-------DM---------------ISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 83 ~l~~~~~~~~~~~~---A~~~~~~~~~~-------~~---------------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.|..+|...||+.. ..+.++.+... .. ..-...+....-.|-|+.+++++..+-.
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 99999999998655 33322222211 00 0111233333445556666666554421
Q ss_pred CCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCchHhH
Q 036775 138 NGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEAEWSV 214 (293)
Q Consensus 138 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~ 214 (293)
..- ..++..+++-+.. ......++........+ .|+..+|.+++++-..+|+.+.|..++.+| +...+...
T Consensus 168 sa~---~~p~~vfLrqnv~--~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 168 SAW---NAPFQVFLRQNVV--DNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred ccc---cchHHHHHHHhcc--CCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 100 0111123443333 23344555555544223 699999999999999999999999999999 44444444
Q ss_pred HHHHHHHHHhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHH
Q 036775 215 WGALLNACRIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTFAGADRWED 264 (293)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 264 (293)
|..|+.+ .++...+..+++.|.+.+ .|+..|+...+..+...|....
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 4455544 788888889998888876 8889999888888877666433
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.29 E-value=3.6e-10 Score=82.07 Aligned_cols=194 Identities=9% Similarity=0.010 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
+...|.-.|...|+...|..-+++..+.|+ .+|..+...|.+.|..+.|.+.|++..+.... +....|..-.-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 456778888899999999999998887654 46777888888899999999999988876443 55667777777888
Q ss_pred CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHH
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 234 (293)
.|++++|.+.|++....-...--..+|..+.-+-.+.|+++.|...|++. ...|+ ..+...+.......|++-.|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88999999999888873223333467888888888889999999988887 44443 33566677777888888899888
Q ss_pred HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++......+++....-..|+.-.+.|+.+.+-++=..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888777666654
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.29 E-value=7.7e-10 Score=95.35 Aligned_cols=272 Identities=11% Similarity=0.002 Sum_probs=205.9
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcc--CCCchH------HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTK--EAEPNE------ATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (293)
+-+..-|.+...+...|++.+|...|+.....- ...++. .+-..+.+..-..++.+.|.+.|..+.+ ..|
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp 527 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHP 527 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCc
Confidence 456677888888889999999999999886650 012222 2333455556677899999999999987 444
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHH
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALI 151 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll 151 (293)
.-+..|..|+......+...+|..++.....- ++..++.+...+.+...+..|.+-|....+.- ..+|.++...|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 44555566665555567888999999888753 67788888889999999999999777765432 235777776776
Q ss_pred HHHhc------------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCchHhHHHH
Q 036775 152 SACSH------------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGA 217 (293)
Q Consensus 152 ~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~ 217 (293)
+.|.+ .+..++|+++|.+..+ ..+-|...-|-+.-+++..|++.+|.++|.... ...+..+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 65542 2457789999998886 445677777888899999999999999999982 2234567889
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
+.++|...|++..|.+.|+...+.. ..++.+...|.+++-+.|++.+|.+.+..... +.|..
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~ 749 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSN 749 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCcc
Confidence 9999999999999999999888766 45678899999999999999999998866544 44443
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=9.2e-09 Score=86.42 Aligned_cols=260 Identities=13% Similarity=-0.012 Sum_probs=186.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC- 91 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 91 (293)
...+...|++++|++.++.-.+. +.............+.+.|+.++|..++..+.+ ..|.+..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~--rNPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELID--RNPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHhhhc
Confidence 34568889999999999886553 444455666777889999999999999999987 4455555556666666333
Q ss_pred ----CCHHHHHHHHHHhhhCCc--ccHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775 92 ----GDVGIAIQVFNMLAYKDM--ISWSTVISGLAMNGCG-RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 92 ----~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 164 (293)
.+.+...++|+++.+.-+ .....+.-.+.....+ ..+...+..+...|+++ +|..+-..|....+.+-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 257778888888875422 2222222222222223 34556667777888753 5666666666665655555
Q ss_pred HHHHHhhhhc-------------CCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHHHHHHHHHhcCC
Q 036775 165 ILFKAMSTVY-------------EIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACRIHRN 227 (293)
Q Consensus 165 ~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~ 227 (293)
+++....... .-+|+. .++..+...|-..|++++|+.++++. ...|+. ..|..-.+.+...|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 6665554310 112444 34466778899999999999999977 667874 478778888999999
Q ss_pred hhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775 228 DEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279 (293)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 279 (293)
+.+|....+.....+..|...=+-.+..+.+.|+.++|.+++..+.+.+..|
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999999999998888888889999999999999999999887766533
No 64
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=2.8e-08 Score=79.81 Aligned_cols=265 Identities=12% Similarity=0.056 Sum_probs=171.5
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVG 81 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 81 (293)
+|+...|++.|..=.+-..++.|..+|+...- +.|+..+|.-..+---+.|....+..+|+.+.+..|... +...+
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lf 247 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILF 247 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 58888888888888888888888888888876 678888888777777788888888888888777433322 22233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh--------------------------------------------C---CcccHHH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAY--------------------------------------------K---DMISWST 114 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~--------------------------------------------~---~~~~~~~ 114 (293)
.+....-.++..++.|.-+|+-... . |-.+|--
T Consensus 248 vaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfd 327 (677)
T KOG1915|consen 248 VAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHH
Confidence 4444444445556666655543321 0 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-------HHHHHHHHH---hcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDV-------TFIALISAC---SHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (293)
.++.-...|+.+...++|++.... ++|-.. .|.-+=.+| ....+.+.+.++++.... -++....|+.
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHH
Confidence 677777789999999999998765 444221 121111111 256777888888887775 4444555555
Q ss_pred HHHHHHH----hcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775 185 CVVDMYG----RAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259 (293)
Q Consensus 185 ~l~~~~~----~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (293)
.+--+|+ ++.++..|.+++... |.-|...++...|..-.+.++++.+..++++..+-.|-+-.+|......-...
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 4443333 466777777777665 66676666666666666667777777777777666666666666655555566
Q ss_pred CCHHHHHHHHHHHH
Q 036775 260 DRWEDANKIRDEIR 273 (293)
Q Consensus 260 g~~~~a~~~~~~m~ 273 (293)
|+.+.|..+|.-..
T Consensus 485 gdtdRaRaifelAi 498 (677)
T KOG1915|consen 485 GDTDRARAIFELAI 498 (677)
T ss_pred hhHHHHHHHHHHHh
Confidence 66666666665443
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.24 E-value=7.7e-09 Score=89.39 Aligned_cols=266 Identities=9% Similarity=0.026 Sum_probs=179.5
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLV 80 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 80 (293)
.|++.-+.|...|.-.|+++.++.+...+....... .-...|..+.+++-..|++++|...|.+..+ ..++ ...
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~ 344 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLP 344 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCcccc
Confidence 467778888899999999999999988887753111 2234678888999999999999999888765 3333 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCcHhHHHHHHHH
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG----CGRQALQLFSLMIINGVFPDDVTFIALISA 153 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 153 (293)
+..|...|.+.|+++.+...|+.+.+. +..+...|...|...+ ..+.|..++.+..+.-+ -|...|..+...
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 567888999999999999999988754 3445555556666554 45666666666655432 366677666666
Q ss_pred HhcCCChhHHHHHHHHhhh---hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C-----CCchH------hHHHHH
Q 036775 154 CSHGGLVDQGLILFKAMST---VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P-----IEAEW------SVWGAL 218 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-----~~~~~------~~~~~l 218 (293)
+....-+. ++.+|..... ..+..+..+..|.+...+...|++++|...|+.. + ..++. .+-..+
T Consensus 424 ~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNl 502 (1018)
T KOG2002|consen 424 LEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNL 502 (1018)
T ss_pred HHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHH
Confidence 55443333 2555443331 1344466677888888888888888888888766 1 11222 122234
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
....-..++++.|...|+.+.+..|.-+..|..++......+...+|...++....
T Consensus 503 arl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 503 ARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 44456667778888888888877777777777777555666777777777776654
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=2.5e-08 Score=72.70 Aligned_cols=195 Identities=11% Similarity=-0.020 Sum_probs=107.7
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG 123 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 123 (293)
-+.-.|.+.|+...|..-++...+ .-|.+..+|..+...|.+.|+.+.|.+-|++..+- +..+.|.-.--+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 344445566666666666666555 33344455566666666666666666666655532 4445555555556666
Q ss_pred CHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 202 (293)
++++|...|++....-.-| -..||..+..+..+.|+.+.|...|++..+ -.+-...+...+.....+.|++-.|...
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666655432111 224555555555666666666666666554 1122234455566666666666666666
Q ss_pred HHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 203 IREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 203 ~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
++.. ...++..+.-..|+.-...|+.+.+.++-..+.+..|-+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 6665 223444444445555566666666666666665555543
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.7e-08 Score=81.15 Aligned_cols=259 Identities=14% Similarity=0.024 Sum_probs=184.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHHHHHHHH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVINMY 88 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 88 (293)
..-.-|.++|.+++|++.|.+... .-|| +..|.....+|...|+|+++.+.-....+ +.|+- ..+..-..++
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAH 193 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHH
Confidence 344568889999999999999998 6688 77788888888999999988877766655 34432 3334444455
Q ss_pred HHcCCHHHHHH----------------------HHHHh---------hh---C---Cc----------------------
Q 036775 89 VKCGDVGIAIQ----------------------VFNML---------AY---K---DM---------------------- 109 (293)
Q Consensus 89 ~~~~~~~~A~~----------------------~~~~~---------~~---~---~~---------------------- 109 (293)
-..|++++|+. ++++. .+ | +.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 55555555542 22111 00 0 00
Q ss_pred ---------------------------------------ccHH-------HHHHHH-------HhcCCHHHHHHHHHHHH
Q 036775 110 ---------------------------------------ISWS-------TVISGL-------AMNGCGRQALQLFSLMI 136 (293)
Q Consensus 110 ---------------------------------------~~~~-------~li~~~-------~~~~~~~~a~~~~~~m~ 136 (293)
..++ .+..++ .-.|+.-.|.+-|+...
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0000 111111 12456666777777776
Q ss_pred hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hH
Q 036775 137 INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SV 214 (293)
Q Consensus 137 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~ 214 (293)
.....++. .|.-+..+|....+.++.++.|+..... -+-++.+|..-..++.-.+++++|..=|++. .+.|+. ..
T Consensus 354 ~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 354 KLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred hcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 65444332 2777777888999999999999998862 2345667888888888899999999999988 666654 46
Q ss_pred HHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036775 215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280 (293)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 280 (293)
|-.+..+.-+.+.++++...|+...+..|..+.+|+....++..++++++|.+.|+..++ +.|+
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~ 494 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccc
Confidence 666776767788999999999999999999999999999999999999999999998766 4454
No 68
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=1.3e-09 Score=85.27 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=75.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH----hcC
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG----RAG 194 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 194 (293)
+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ . ..|. +...+..++. -.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDS-ILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcH-HHHHHHHHHHHHHhCch
Confidence 44456666666655432 2444555555566666666666666666653 1 2222 2222333222 223
Q ss_pred ChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCH-HHHHHHHHH
Q 036775 195 LLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW-EDANKIRDE 271 (293)
Q Consensus 195 ~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~ 271 (293)
++.+|..+|+++ ...+++.+.+.+..+....|++++|..++++.....|.++.+...++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 466666666666 22345555555555666666666666666666555555666666666665555555 445555555
Q ss_pred HHH
Q 036775 272 IRR 274 (293)
Q Consensus 272 m~~ 274 (293)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 544
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=5e-10 Score=87.66 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC-CchhHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS-VSNLVGNAVI 85 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~ 85 (293)
....-+.+++...|+.+.++ .+.... ..|.......+...+....+-+.+..-++.... .... .+..+.....
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~-~~~~~~~~~~~~~~A 109 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLA-DQAGESNEIVQLLAA 109 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCC-TS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHH-hccccccHHHHHHHH
Confidence 33445667788888876543 444332 356666655555555544444455444444333 2223 2333334444
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh----cCCChh
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----HGGLVD 161 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~ 161 (293)
..+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+.+ +..+...+..++. ....+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHH
Confidence 5677789999999999876 456677788899999999999999999998753 3345555555544 334799
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCCh-hhchHHHHHH
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRND-EMFDPIRQEL 238 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 238 (293)
+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++. ... .+..+...++......|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 99999999986 55678888999999999999999999999887 333 3556777777777777777 7788888888
Q ss_pred HhhcCCch
Q 036775 239 VNKKGVSV 246 (293)
Q Consensus 239 ~~~~~~~~ 246 (293)
....|..+
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88776544
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-08 Score=82.90 Aligned_cols=243 Identities=12% Similarity=-0.023 Sum_probs=190.5
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGN 82 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 82 (293)
+....+..-|.++...|+..+-..+=.++.+. .|-.+.+|-++.--|...|...+|++.|..... +.| -...|-
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~---lD~~fgpaWl 350 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT---LDPTFGPAWL 350 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh---cCccccHHHH
Confidence 45566677788899999998888888888875 466678999999888888999999999999855 444 346788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
...+.|+-.|+-++|...+....+- ....+--+.--|.+.++...|.+.|.+.....+ -|+...+-+.-.....+.
T Consensus 351 ~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 351 AFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEE 429 (611)
T ss_pred HHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhh
Confidence 9999999999999999999877653 222233344568889999999999999876533 366677777766777899
Q ss_pred hhHHHHHHHHhhhhcC-C---Cc-chhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhch
Q 036775 160 VDQGLILFKAMSTVYE-I---VP-QTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~-~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
+.+|..+|+....... + ++ -..+++.|..+|.+.+++++|+..++.. -...++.++.++.-.|...|+++.|.
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 9999999988773111 1 11 2346889999999999999999999988 33557788999999999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHH
Q 036775 233 PIRQELVNKKGVSVGTFALM 252 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l 252 (293)
..|.+.....|.+..+-..|
T Consensus 510 d~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 510 DHFHKALALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHhcCCccHHHHHHH
Confidence 99999999888775544333
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.7e-09 Score=83.33 Aligned_cols=158 Identities=13% Similarity=0.147 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 201 (293)
+|++++|.+.|++.....-.-....|+.-+ .+-..|++++|+..|-.+.. -+.-+..+...+...|....+...|++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 567777777777766543222222333222 23445555555555544432 112233333444444444444444444
Q ss_pred HHHhC-CC-CchHhHHHHHHHH----------------------------------HHhcCChhhchHHHHHHHhhcCCc
Q 036775 202 FIREM-PI-EAEWSVWGALLNA----------------------------------CRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 202 ~~~~~-~~-~~~~~~~~~l~~~----------------------------------~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
++-+. .+ ..|+.....|... |....-.+++..+|++..- ..|+
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~ 658 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPN 658 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCcc
Confidence 44443 11 1223333333333 4444445555555554432 3456
Q ss_pred hhhHHHHHHH-HhcCCCHHHHHHHHHHHHHcCCCCCCccc
Q 036775 246 VGTFALMSNT-FAGADRWEDANKIRDEIRRMGLKKKTGCS 284 (293)
Q Consensus 246 ~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 284 (293)
..-|..++.. +.+.|++.+|.++++...+ .++.|..+.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldcl 697 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHH
Confidence 6667766555 4467888888888887643 455554443
No 72
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.17 E-value=1.1e-08 Score=91.42 Aligned_cols=205 Identities=8% Similarity=0.038 Sum_probs=172.6
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD 144 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 144 (293)
+.|-+...|-..|......+++++|.++.++.... -.-.|.++++.-..-|.-+...++|+++.+..- .-
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~ 1530 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AY 1530 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hH
Confidence 56667778889999999999999999999988753 234788888888888999999999999987521 24
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---hHhHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGALLN 220 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~l~~ 220 (293)
..|..|...|.+.++.++|.++++.|.++++ -...+|...+..+.+.++-+.|..++.+. ..-| ........+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 5688899999999999999999999998554 56678999999999999999999999887 3233 4445555566
Q ss_pred HHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 221 ACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
.-.+.|+.+.+..+|+......|.-...|+..|..-.+.|+.+.++.+|++....++.|..
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 6688999999999999999999988999999999999999999999999999998887754
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.13 E-value=3.2e-07 Score=75.09 Aligned_cols=255 Identities=9% Similarity=-0.041 Sum_probs=127.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH---HHHHhcccCcchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN---VLSACSSISALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVK 90 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 90 (293)
.+...|++++|.+.+++..... +.|...+.. ........+....+.+.+... ....|+ ......+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHH
Confidence 3455677777777777766642 223333331 111112234444444444331 122222 2333455566777
Q ss_pred cCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcH--hHHHHHHHHHhcCCChhHHH
Q 036775 91 CGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDD--VTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~--~~~~~ll~~~~~~~~~~~a~ 164 (293)
.|++++|.+.+++..+. +...+..+..++...|++++|...+++....... |+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777777643 3455666777777777777777777776654221 222 23445666677777777777
Q ss_pred HHHHHhhhhcCCCcchhHH-H--HHHHHHHhcCChHHHHHH--H-HhC-CCCc-hHhHHH--HHHHHHHhcCChhhchHH
Q 036775 165 ILFKAMSTVYEIVPQTQHY-A--CVVDMYGRAGLLEEAEAF--I-REM-PIEA-EWSVWG--ALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~-~~~~-~~~~~~--~l~~~~~~~~~~~~a~~~ 234 (293)
.++++........+..... + .++.-+...|....+.++ + ... ...+ ....+. ....++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 7777765311111111111 1 222233334433333222 1 111 1001 111122 234445677777777777
Q ss_pred HHHHHhhcCC---------chhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 235 RQELVNKKGV---------SVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 235 ~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
++.+...... ..........++...|++++|.+.+.+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7666553311 112222233334567777777777776544
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-07 Score=74.72 Aligned_cols=186 Identities=8% Similarity=-0.031 Sum_probs=110.9
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChh
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVD 161 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 161 (293)
+......++++.|+.+-++..+. ++..|-.-...+...|++++|.-.|+......+ -+...|..++.+|...|+..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 33334444555555555555433 333444444556666777777777766554321 25566777777777777777
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHH-HHHHh-cCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHH
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVV-DMYGR-AGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQE 237 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 237 (293)
+|.-.-+...+ -++.+..+.+.+. ..+.. ...-++|..+++.- .++|+.. ..+.+...+...|..+.+..++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 76666665554 2334444544442 22222 22235666666665 5666654 445555557888888888888887
Q ss_pred HHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 238 LVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.....+ |....+.|...+...+.+.+|.+.|....+
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 776555 556777788888888888888777765443
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=8.8e-07 Score=72.54 Aligned_cols=267 Identities=12% Similarity=-0.026 Sum_probs=170.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHH-HHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATL-VNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
....|..+...+...|+.+.+...+....+.....++.... ......+...|++++|.+++++..+ ..|.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD--DYPRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 34456667777778888888887777766543223333222 2223346778999999999999887 34555545442
Q ss_pred HHHHHH----HcCCHHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 84 VINMYV----KCGDVGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 84 l~~~~~----~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
...+. ..+..+.+.+.++.....+. .....+...+...|++++|...+++..+.... +...+..+...+..
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 22222 24555666666655322222 23334556788999999999999999987533 56778888889999
Q ss_pred CCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHH----H--HHHHHHHhcCC
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVW----G--ALLNACRIHRN 227 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~----~--~l~~~~~~~~~ 227 (293)
.|++++|...++.........|+. ..|..+...+...|++++|..++++. ...|..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999988622212333 23556888999999999999999997 223311111 1 22333445555
Q ss_pred hhhchHH---HHHHHhhcCCc--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 228 DEMFDPI---RQELVNKKGVS--VGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 228 ~~~a~~~---~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
...+.+. ........+.. .........++...|+.++|..+++.+...
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444443 11111111111 122235677788999999999999998764
No 76
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.1e-07 Score=72.24 Aligned_cols=255 Identities=12% Similarity=0.025 Sum_probs=175.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH-HHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN-AVINM 87 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~ 87 (293)
+++.+..+.+..+++.|++++..-.+. .+.+....+.+..+|-...++..|...++++.. .-|...-|. --...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 567777788888999999998887664 233677778888888888999999999998865 334433332 23455
Q ss_pred HHHcCCHHHHHHHHHHhhh-----------------------------------CCcccHHHHHHHHHhcCCHHHHHHHH
Q 036775 88 YVKCGDVGIAIQVFNMLAY-----------------------------------KDMISWSTVISGLAMNGCGRQALQLF 132 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~-----------------------------------~~~~~~~~li~~~~~~~~~~~a~~~~ 132 (293)
+.+.+.+..|+++...|.. .+..+.+.......+.|++++|.+-|
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 5666677777776665542 12233333444456789999999999
Q ss_pred HHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-------------chh--------HHHHHH----
Q 036775 133 SLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-------------QTQ--------HYACVV---- 187 (293)
Q Consensus 133 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~l~---- 187 (293)
....+-+---....|+..+ +..+.|+.+.|.++..++++ .|++. |.. +-+.++
T Consensus 168 qaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 9988764433566777666 45577899999999998886 45431 111 122333
Q ss_pred ---HHHHhcCChHHHHHHHHhCC----CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775 188 ---DMYGRAGLLEEAEAFIREMP----IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 188 ---~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (293)
..+.+.|+++.|.+-+-.|+ ...|++|...+.-.- ..+++.....-++-+....|-.+.||..++-.||+..
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhH
Confidence 34567899999999999992 345666655443221 2344555555666666777778899999999999999
Q ss_pred CHHHHHHHHHH
Q 036775 261 RWEDANKIRDE 271 (293)
Q Consensus 261 ~~~~a~~~~~~ 271 (293)
-++-|-.++.+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 99999888754
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.3e-07 Score=73.44 Aligned_cols=250 Identities=11% Similarity=-0.006 Sum_probs=174.3
Q ss_pred cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh-HHHHHHHHHHHcCCHHHH
Q 036775 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL-VGNAVINMYVKCGDVGIA 97 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A 97 (293)
.++...|...+-.+.....++-|......+..++...|+.+.|...|++... ..|+.. ......-.+.+.|+.+..
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhH
Confidence 4555555555544444433566677777777888888888888888887754 334332 223333445566777776
Q ss_pred HHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775 98 IQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174 (293)
Q Consensus 98 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 174 (293)
..+...+-.. +...|-.-...+...++++.|+.+-++..+.... +...+..--..+...++.++|.-.|+..+..
T Consensus 286 ~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L- 363 (564)
T KOG1174|consen 286 SALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML- 363 (564)
T ss_pred HHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence 6666655443 3445666666667788899999988888765433 5556666667788999999999999998852
Q ss_pred CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHH-HH-HHhcCChhhchHHHHHHHhhcCCchhhHH
Q 036775 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALL-NA-CRIHRNDEMFDPIRQELVNKKGVSVGTFA 250 (293)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 250 (293)
-+-+...|.-|+..|...|++.+|.-.-+.. +. ..+..+...+. .. +.....-++|..+++...+..|.-....+
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 2346788999999999999999987765544 21 12333333221 12 33445568999999999999998889999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 251 LMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+...+...|+.++++++++.-..
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh
Confidence 999999999999999999987654
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.2e-07 Score=79.13 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC----cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc----C-CCc-c
Q 036775 113 STVISGLAMNGCGRQALQLFSLMIIN---GVFP----DDVTFIALISACSHGGLVDQGLILFKAMSTVY----E-IVP-Q 179 (293)
Q Consensus 113 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~ 179 (293)
+.+...+...+++++|..++....+. -+.+ -..+++.+...|...|++++|.++++...... + ..+ .
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33444444555555555555443221 0111 12456666666666666666666666655421 1 111 1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC--------CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREM--------PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
...++.|...|.+.++.++|.++|.+. +..|+.. +|..|...|...|+++.|..+.+.+.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234556666666666666666666554 2233333 56666777777777777777666555
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.3e-08 Score=83.28 Aligned_cols=219 Identities=11% Similarity=-0.008 Sum_probs=168.1
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQA 128 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a 128 (293)
+.+.|++.+|.-.|+...+ .-|-+...|.-|.-.....++-..|+..+++..+-| ....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3466778888888888877 567778888888888888888888888888887654 44555666677888888888
Q ss_pred HHHHHHHHhCCCC--------CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHH
Q 036775 129 LQLFSLMIINGVF--------PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200 (293)
Q Consensus 129 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 200 (293)
+..++......++ ++..+-.. ..+.....+....++|-++....+..+|..+...|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887654321 01000000 1222333455666777666654565678888999999999999999999
Q ss_pred HHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 201 AFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 201 ~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+.|+.. .++| |..+||.|...++...+.++|...|++..+..|.-+++...|.-.|...|.+++|.+.|-+...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999998 6677 5568999999999999999999999999999998899999999999999999999998876443
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=5.8e-07 Score=75.80 Aligned_cols=258 Identities=10% Similarity=0.003 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhc-c-----cCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-S-----ISALSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
........+.+.|+.++|..+|..+.+.+ |+...|...+..+. - ..+.+...++++.+.. .. |.....
T Consensus 40 ~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~--~y-p~s~~~ 113 (517)
T PF12569_consen 40 VLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAE--KY-PRSDAP 113 (517)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHH--hC-ccccch
Confidence 34456678899999999999999999964 66666555554443 1 2256777888888876 33 333322
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHhhhCCc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCcHh
Q 036775 82 NAVINMYVKCGDV-GIAIQVFNMLAYKDM-ISWSTVISGLAMNGCGRQALQLFSLMIIN----G----------VFPDDV 145 (293)
Q Consensus 82 ~~l~~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~ 145 (293)
..+.-.+..-..+ ..+..++..+..+.+ .+|+.+-..|......+-..+++...... + -.|+..
T Consensus 114 ~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 193 (517)
T PF12569_consen 114 RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTL 193 (517)
T ss_pred hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHH
Confidence 2332222222233 344455566666655 45666666666555555566666665432 1 123443
Q ss_pred --HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHH
Q 036775 146 --TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLN 220 (293)
Q Consensus 146 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~ 220 (293)
++.-+...|...|++++|.++++..++ + .|+ +..|..-.+.|-+.|++.+|.+.++.. ...+ |-..-+-...
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~-h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK 270 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIE-H--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh-c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence 445556667899999999999999986 2 455 567888899999999999999999988 3333 3344444555
Q ss_pred HHHhcCChhhchHHHHHHHhhc-CCch--------hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 221 ACRIHRNDEMFDPIRQELVNKK-GVSV--------GTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+.+.|+.+.|..++....+.+ .+.. +-..-...+|.+.|++..|++-|..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5789999999999998887765 2211 1224567889999999999998887654
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=1.2e-06 Score=70.75 Aligned_cols=255 Identities=11% Similarity=0.040 Sum_probs=197.3
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHH
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIA 97 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 97 (293)
..+++..|.++|+...... .-+...|.-.+..-.+...+..|..+++.... -+|.-...|--.+.+--..|++..|
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHH
Confidence 3567788999999887642 45566777777777889999999999999987 5666667777777778888999999
Q ss_pred HHHHHHhh--hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775 98 IQVFNMLA--YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE 175 (293)
Q Consensus 98 ~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 175 (293)
.++|++-. +|+..+|++.|+--.+-+.++.|..+|++..-. -|++.+|.....--.+.|+...|.++|+...+..|
T Consensus 161 RqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 161 RQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999876 589999999999999999999999999998864 58999999999988999999999999999887433
Q ss_pred CC-cchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHHHHHHHHhcCChhhchHH--------HHHHHhhc
Q 036775 176 IV-PQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEMFDPI--------RQELVNKK 242 (293)
Q Consensus 176 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~ 242 (293)
-. .+...+.+....=.++..++.|.-+|+-. +.......|..+..--.+.|+....... ++.....+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 21 12234445555555677888898888766 2222344566666555666665544333 34555677
Q ss_pred CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC
Q 036775 243 GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKK 279 (293)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 279 (293)
|-|-.+|--.+..-...|+.+...++|++... +++|
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp 354 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPP 354 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCc
Confidence 88888998889998999999999999998765 4555
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.99 E-value=8.5e-10 Score=56.13 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=15.9
Q ss_pred CCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 175 EIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 83
>PF12854 PPR_1: PPR repeat
Probab=98.96 E-value=1.4e-09 Score=55.32 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.3
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
|++||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888774
No 84
>PLN02789 farnesyltranstransferase
Probab=98.94 E-value=1.4e-06 Score=69.41 Aligned_cols=223 Identities=10% Similarity=-0.007 Sum_probs=102.9
Q ss_pred CcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC-CHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCH--HHHH
Q 036775 56 SALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG-DVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCG--RQAL 129 (293)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~--~~a~ 129 (293)
+..++|..+...+.+ -.|-+..+|+.-..++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 344444444444443 22222333333333333444 345555555554432 223344333333333332 4445
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CCh----HHHHHH
Q 036775 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLL----EEAEAF 202 (293)
Q Consensus 130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~~ 202 (293)
++++++.+...+ |..+|.....++...|+++++++.++++++ .. +-|...|+....++.+. |.+ ++....
T Consensus 129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 555555544333 445555555555555555555555555554 11 22334444444333332 111 233333
Q ss_pred HHhC-CCCc-hHhHHHHHHHHHHhc----CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC----------------
Q 036775 203 IREM-PIEA-EWSVWGALLNACRIH----RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD---------------- 260 (293)
Q Consensus 203 ~~~~-~~~~-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------------- 260 (293)
..+. ...| |...|+.+...+... +....+..++.......+.++.....|+..|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 3222 3233 333455555554442 22344555555555555556666666666666532
Q ss_pred --CHHHHHHHHHHHHHcCCCCCCccce
Q 036775 261 --RWEDANKIRDEIRRMGLKKKTGCSW 285 (293)
Q Consensus 261 --~~~~a~~~~~~m~~~~~~p~~~~~~ 285 (293)
..++|.++++.+. ...|=..-||
T Consensus 286 ~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 286 LSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred cccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 3467888888873 3444444454
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=4.3e-07 Score=69.79 Aligned_cols=184 Identities=12% Similarity=-0.008 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGN 82 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 82 (293)
....+-.+...+...|++++|...|+++....+..|. ...+..+..++.+.|++++|...++.+.+...-.+.. ..+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4445555666666677777777777766553211111 1344555566666677777777777766511111111 1233
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHhhhCCcc---cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 83 AVINMYVKC--------GDVGIAIQVFNMLAYKDMI---SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 83 ~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
.+..++.+. |+.++|.+.|+++.+.++. .+..+..... ... .. ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHHHHH
Confidence 344444433 4566666666666543221 1111110000 000 00 00112445
Q ss_pred HHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 152 SACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+.+.|++++|...++...+...-.| ....+..+..++...|++++|..+++.+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999998888876322122 3467888888999999999998888876
No 86
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=1.8e-07 Score=71.89 Aligned_cols=183 Identities=9% Similarity=-0.093 Sum_probs=125.7
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM------ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VT 146 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~ 146 (293)
+.....+..+...+.+.|++++|...|+++.+.++ .++..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34455667888888999999999999998875322 35677888889999999999999999875432121 13
Q ss_pred HHHHHHHHhcC--------CChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHH
Q 036775 147 FIALISACSHG--------GLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGA 217 (293)
Q Consensus 147 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 217 (293)
+..+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 44444455443 6788888888888762 2332 22222221111 00000 001123
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCC---chhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGV---SVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
+...+...|+++.|...++...+..|. .+..+..+..++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455688999999999999999887643 4578899999999999999999999988764
No 87
>PLN02789 farnesyltranstransferase
Probab=98.91 E-value=5.9e-06 Score=65.86 Aligned_cols=209 Identities=10% Similarity=0.018 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccC-cchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSIS-ALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+++.+-..+...++.++|+.+..++.. ..|+.. .|+.--.++...+ .++++...++.+.+ ..+.+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHH
Confidence 455566667778899999999999988 445544 5655555556666 57899999999987 5566767777666
Q ss_pred HHHHHcCCH--HHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC---
Q 036775 86 NMYVKCGDV--GIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG--- 157 (293)
Q Consensus 86 ~~~~~~~~~--~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--- 157 (293)
..+.+.|+. ++++.+++++.+. +..+|+...-++...|+++++++.++++.+.++. |...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence 566666653 6788899888865 5678888888888999999999999999998766 666777666665544
Q ss_pred CCh----hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc----CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHh
Q 036775 158 GLV----DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA----GLLEEAEAFIREM-PIEA-EWSVWGALLNACRI 224 (293)
Q Consensus 158 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~ 224 (293)
|.. ++...+...++. ..+-|...|+.+...+... ++..+|...+.+. ...| +......|+..|..
T Consensus 193 ~~~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 222 466777767765 3355677888888888773 3456687777776 3344 45567777877765
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=1.1e-06 Score=79.18 Aligned_cols=223 Identities=9% Similarity=0.048 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-C-cccHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV---SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-D-MISWSTV 115 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l 115 (293)
++..|-..+.-..+.++.++|+++.+++...-.+.. -..+|.++++.-..-|.-+...++|+++.+- | -..|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344566666666666666666666666665222111 1234555666555556666666666666653 2 2346666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--chhHHHHHHHHHHhc
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--QTQHYACVVDMYGRA 193 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 193 (293)
...|.+.+..++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.+..+ ..+- ........+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence 66666666667777777666543 112455666666666666666666666666654 1211 223344445555566
Q ss_pred CChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-CC--chhhHHHHHHHHhcCCCHHHHH
Q 036775 194 GLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-GV--SVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 194 g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~a~ 266 (293)
|+.+.+..+|+.. ...| -...|+..+..-.++|+.+.+..+|+++.... ++ --..|...+..--..|+-+.+.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 6666666666665 1122 33456666666666677777777776666654 21 1234555555555555544333
No 89
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=1.4e-06 Score=77.35 Aligned_cols=229 Identities=8% Similarity=0.044 Sum_probs=122.8
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
..+...|..|+..+...+++++|.++.+.... ..|+.. .|..+...+.+.++.+.+..+ .+.. -.+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~--- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNL--- 97 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hccccc---
Confidence 35677888999999999999999999997776 445543 333333345566665555544 2222 111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
++.....+...+..- +..++-.+..+|-+.|+.++|..+|+++.+..+. |....|.+...+... +
T Consensus 98 -----------~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 98 -----------KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred -----------chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 111111111111110 1223445555566666666666666666555422 455555555555555 6
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHH---HHH--hcCChHHHHHHHHhC----CCCchHhHHHHHHHHHHhcCChhh
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVD---MYG--RAGLLEEAEAFIREM----PIEAEWSVWGALLNACRIHRNDEM 230 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~ 230 (293)
+++|.+++.+.... - .+..-|+.+.. -++ ...+++.-..+.+.+ +...-+.++--+...|...++++.
T Consensus 165 L~KA~~m~~KAV~~-~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYR-F--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHH-H--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 66666655555431 0 00001111111 000 111222222222222 222334455556667888888999
Q ss_pred chHHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 231 FDPIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
+..+++.+.+..+.|.....-++.+|.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999988888888888888877
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=4.6e-07 Score=74.59 Aligned_cols=248 Identities=10% Similarity=-0.044 Sum_probs=182.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (293)
.+.+.|++.+|.-.|+...+. -+-+...|..|..+.+..++-..|...+++..+ --|-+..+.-.|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhH
Confidence 467889999999999999886 366678999999999999999999999999877 3444667778888899999999
Q ss_pred HHHHHHHHHhhhCC-cccHHHHH---------HHHHhcCCHHHHHHHHHHHHh-CCCCCcHhHHHHHHHHHhcCCChhHH
Q 036775 95 GIAIQVFNMLAYKD-MISWSTVI---------SGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSHGGLVDQG 163 (293)
Q Consensus 95 ~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~a 163 (293)
..|.+.++.-.... ...|...- ..+.....+....++|-++.. .+..+|......|--.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999998775321 11111000 112222334556667766654 44446777777888888899999999
Q ss_pred HHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775 164 LILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (293)
...|+.... .-+-|...||.|.-.++...+.++|+.-|.+. .+.|..+ ....|.-+|...|.+++|...|-.....
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999986 33446789999999999999999999999998 7788765 5666777899999999998887555432
Q ss_pred cC----------CchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 242 KG----------VSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 242 ~~----------~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
.+ ++-..|.+|=.++.-.++.+.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 1224566665666666666644443
No 91
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2e-06 Score=64.37 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=152.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
++-+.-.|++..++..-...... +-+...-..+-++|...|.+... ...++. +-.|.......+......-+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcc
Confidence 34455568888877665554332 23444444555666666655433 222222 22333333333333333333
Q ss_pred CHHH-HHHHHHHhhhCCcc---cHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775 93 DVGI-AIQVFNMLAYKDMI---SWS-TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILF 167 (293)
Q Consensus 93 ~~~~-A~~~~~~~~~~~~~---~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 167 (293)
+.++ -.++.+.+..++.. ++. .-...|+..|++++|++...... +......=+..+.+..+.+.|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 33444555444222 222 22345788899999998887721 3333333344556778889999999
Q ss_pred HHhhhhcCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775 168 KAMSTVYEIVPQTQHYACVVDMYGR----AGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (293)
+.|.+ . .+..|.+.|..++.+ .++..+|.-+|++| +..|+..+.+....++...|++++|..+++.....
T Consensus 161 k~mq~-i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQ-I---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHc-c---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99986 1 344566666666554 46688899999999 46788888888888899999999999999999998
Q ss_pred cCCchhhHHHHHHHHhcCCCHHHH-HHHHHHHHH
Q 036775 242 KGVSVGTFALMSNTFAGADRWEDA-NKIRDEIRR 274 (293)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 274 (293)
.+.++.+...++.+-...|...++ .+.+.+++.
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 888888888888887777776544 445555543
No 92
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=3e-07 Score=77.65 Aligned_cols=209 Identities=11% Similarity=-0.032 Sum_probs=149.2
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccHHHHHHHHHhcCC
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISWSTVISGLAMNGC 124 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~ 124 (293)
.+...+.+.|-...|..++++... |..++.+|+..|+..+|..+..+-.+ ||...|..+.+......-
T Consensus 403 ~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344445556666666666666532 45667777777777777777766554 355566666666655555
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 036775 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 204 (293)
+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 67777776654221 11112222234678888888888766522 3345678888888889999999999998
Q ss_pred hC-CCCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 205 EM-PIEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 205 ~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.. ...||. ..||.+-.+|.+.++-.+|...+++..+-...+...|.+-+....+.|.+++|.+.+.++.+
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 87 556654 58999999999999999999999999888777778888888899999999999999998866
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.83 E-value=6.7e-06 Score=63.91 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=113.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHH---HHhcccCcchHHHHHHHHHHhhcCCCCchhHH-HHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL---SACSSISALSFGQYVHSYISTRYDLSVSNLVG-NAVINM 87 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~ 87 (293)
+-..+...|++..|+.-|..... .|+..|.++. ..|...|+-..|..=+....+ ..||-..- ..-...
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchh
Confidence 44456667778888877777654 3333344333 346677777777777776654 45554322 223445
Q ss_pred HHHcCCHHHHHHHHHHhhhCCc----------------ccHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH
Q 036775 88 YVKCGDVGIAIQVFNMLAYKDM----------------ISWS--TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA 149 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~----------------~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 149 (293)
+.+.|.+++|..=|+.+.+.++ ..|+ ..+..+...|+...|++....+.+..+ .|...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHH
Confidence 6778888888888887775422 1111 223344556788888888887776533 36677777
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 211 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~ 211 (293)
-..+|...|++..|+.-++...+ --..+..++..+...+...|+.+.++...++. +..||
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 77777777777777766666553 11234445555556666666666666555554 44443
No 94
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.83 E-value=1.6e-05 Score=66.72 Aligned_cols=261 Identities=13% Similarity=0.143 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
..|-..++.....|++......|+.....=++......|...+.-....+-.+.+.+++++..+ +.|.. -+.-+.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHHHHH
Confidence 3556666777778888888888888766533444556777777777777888888888888765 33433 467778
Q ss_pred HHHHcCCHHHHHHHHHHhhhC--------------------------------C----------------cccHHHHHHH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYK--------------------------------D----------------MISWSTVISG 118 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~--------------------------------~----------------~~~~~~li~~ 118 (293)
.+++.+++++|.+.+...... + ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 888888888888877766411 0 1358888999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-------------------------------------------
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS------------------------------------------- 155 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~------------------------------------------- 155 (293)
|.+.|.+++|.++|++..+.-. +..-|+.+..+|.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999998888655421 2222222222221
Q ss_pred -----------------------cCCChhHHHHHHHHhhhhcCCCcc------hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 156 -----------------------HGGLVDQGLILFKAMSTVYEIVPQ------TQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 156 -----------------------~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..|+..+....+.+..+ .+.|. ...|..+.+.|...|+++.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11234444445555543 33332 234677777888888888888888877
Q ss_pred CCCc--h----HhHHHHHHHHHHhcCChhhchHHHHHHHhhc------------CC------chhhHHHHHHHHhcCCCH
Q 036775 207 PIEA--E----WSVWGALLNACRIHRNDEMFDPIRQELVNKK------------GV------SVGTFALMSNTFAGADRW 262 (293)
Q Consensus 207 ~~~~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~------~~~~~~~li~~~~~~g~~ 262 (293)
-..| . ..+|..-...-.++.+++.|..+.+....-. |+ +...|...+...-..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 2121 1 2234444444466777777777776554321 11 233455566666666777
Q ss_pred HHHHHHHHHHHHcC
Q 036775 263 EDANKIRDEIRRMG 276 (293)
Q Consensus 263 ~~a~~~~~~m~~~~ 276 (293)
+....+++++.+..
T Consensus 494 estk~vYdriidLr 507 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777787777643
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=1e-06 Score=65.67 Aligned_cols=151 Identities=15% Similarity=0.024 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh-C--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAY-K--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
..+-..+...|+-+....+..+... . |....+..+....+.|++..|...+++...-. ++|..+|+.+--+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444555555555555555554332 1 33334445566666666666666666655432 345666666666666666
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CchHhHHHHHHHHHHhcCChhhchHHH
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPI--EAEWSVWGALLNACRIHRNDEMFDPIR 235 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (293)
+.++|..-|.+..+.. .-+...++.+...|.-.|+++.|..++..... ..|...-..+.......|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 6666666666665422 22334456666666666666666666665511 123444455555556666666666554
No 96
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=7.8e-06 Score=69.77 Aligned_cols=128 Identities=10% Similarity=0.034 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH-hHHHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACR 223 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~ 223 (293)
.|......+.+.+..++|...+.+... ..+.....|......+...|++++|.+.|... -+.|+. ....++...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 355666677888999999988888875 44556677888888899999999999999887 566754 47888888899
Q ss_pred hcCChhhchH--HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 224 IHRNDEMFDP--IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 224 ~~~~~~~a~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
+.|+...+.. ++..+.+.+|.++..|..+...+.+.|+.++|.+.|......
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9999998888 999999999999999999999999999999999999976553
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.80 E-value=3.9e-06 Score=62.69 Aligned_cols=160 Identities=13% Similarity=0.033 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVIS 117 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 117 (293)
|... ..+-..+...|+-+....+...... ..+.+......++....+.|++..|...|++...+ |..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence 3344 5566667788888888888877654 55666667777999999999999999999998764 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
+|.+.|+.++|..-|.+..+.-.. +....+.+.-.+.-.|+.+.|..++..... .-.-|..+-..+..+....|+++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChH
Confidence 999999999999999999876433 556778888888899999999999999886 33446777888999999999999
Q ss_pred HHHHHHHhC
Q 036775 198 EAEAFIREM 206 (293)
Q Consensus 198 ~a~~~~~~~ 206 (293)
+|.++...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 999988766
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=5.4e-06 Score=72.69 Aligned_cols=132 Identities=10% Similarity=0.013 Sum_probs=62.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
+..+-.|.....+.|..++|..+++...+..+. +......+...+.+.+++++|....++... .-+-+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 344444555555555555555555555443211 233444444455555555555555555543 21223334444445
Q ss_pred HHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775 189 MYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 189 ~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 243 (293)
++.+.|++++|..+|++. ...|+ ...+..+..++...|+.++|...|++..+...
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 555555555555555555 11222 33444445555555555555555555554443
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.78 E-value=1.5e-06 Score=64.53 Aligned_cols=154 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 164 (293)
+..|...|+++.+....+.+..+. . .+...++.+++...+++..+.... |...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 445666666666544433222221 0 111245555555555555544332 5556666666666666666666
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMY-GRAGL--LEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
..|+...+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...++++.
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666541 123444555555543 44454 36666666665 3333 33345555555666666666666666666
Q ss_pred hhcCCchhhH
Q 036775 240 NKKGVSVGTF 249 (293)
Q Consensus 240 ~~~~~~~~~~ 249 (293)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 6655554333
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.75 E-value=3.2e-06 Score=62.74 Aligned_cols=115 Identities=9% Similarity=0.070 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHH-HHhcCC--hhhch
Q 036775 158 GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNA-CRIHRN--DEMFD 232 (293)
Q Consensus 158 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~-~~~~~~--~~~a~ 232 (293)
++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+ +...|+ .+.|.
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 333444444444333 11333444444444444455555554444444 2222 22233333333 233333 24444
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.++++..+..|.++.++..+...+.+.|++++|...|+++.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444444444444444445555555555544443
No 101
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=1.2e-06 Score=71.13 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=107.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
...|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++....... +......-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 3566777777899999999999999999888888999999999999999999999876333 666666667778899999
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCc
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEA 210 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 210 (293)
+.|..+.+++.+ -.+.+-.+|..|..+|...|+++.|+..++.++..+
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999986 223345699999999999999999999999985443
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=6e-07 Score=63.07 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
.+..+..++.+.|++++|...|+...
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333333334444444444444333
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=4.3e-07 Score=63.81 Aligned_cols=89 Identities=7% Similarity=-0.130 Sum_probs=42.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHH
Q 036775 186 VVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWE 263 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 263 (293)
+...+...|++++|...|+.. ...| +...|..+..++...|+++.|...|++..+..|.++..+..+..++...|+++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence 344444455555555554444 2222 33344444444555555555555555555544555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 036775 264 DANKIRDEIRR 274 (293)
Q Consensus 264 ~a~~~~~~m~~ 274 (293)
+|...|+...+
T Consensus 110 eAi~~~~~Al~ 120 (144)
T PRK15359 110 LAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=3.8e-06 Score=73.62 Aligned_cols=144 Identities=10% Similarity=-0.060 Sum_probs=114.4
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHH
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWST 114 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 114 (293)
.+.++..+..|..+..+.|.+++|..+++...+ -.|.+......+...+.+.+++++|+..+++....+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 556678888888889999999999999999977 445566677888889999999999999999988653 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHH
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACV 186 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 186 (293)
+..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+.... ...+....|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence 77888999999999999999987433 2578888888899999999999999999886 233444554443
No 105
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=5.4e-05 Score=63.66 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCH
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRW 262 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 262 (293)
.++..|-+.|+++.|..+++.. +..|+.. .|..-.+.+...|+.+.|..++++..+.+.+|...=.--..-..++++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 3455555566666666666655 4455443 3333344456666666666666666665555544333444455556666
Q ss_pred HHHHHHHHHHHHcC
Q 036775 263 EDANKIRDEIRRMG 276 (293)
Q Consensus 263 ~~a~~~~~~m~~~~ 276 (293)
++|.++...+-+.|
T Consensus 456 ~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 456 EEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHhhhcc
Confidence 66666665555544
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=5.2e-05 Score=70.11 Aligned_cols=262 Identities=11% Similarity=-0.028 Sum_probs=172.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhc---CCC-CchhHHHHHH
Q 036775 14 GGYAERGFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRY---DLS-VSNLVGNAVI 85 (293)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~ 85 (293)
..+...|++++|...+++..... ...+ ....+.+...+...|+++.|...+++..... +.. ........+.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 45567899999999999876631 1111 1234455556778999999999988877521 111 1123445667
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC-------C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--cHhHHHHH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK-------D----MISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFP--DDVTFIAL 150 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~-------~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~~~~~~l 150 (293)
..+...|++++|...+++.... + ...+..+...+...|++++|...+.+.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7888999999999998876541 1 112344556677789999999999887543 1112 23344555
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--chH----hHHHHHH
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-----ACVVDMYGRAGLLEEAEAFIREMPIE--AEW----SVWGALL 219 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~----~~~~~l~ 219 (293)
...+...|+.+.|...++..............+ ...+..+...|+.+.|..++...... ... ..+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 667788999999999998886421111111111 11224455689999999998776211 111 1134455
Q ss_pred HHHHhcCChhhchHHHHHHHhhc-----C-CchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 220 NACRIHRNDEMFDPIRQELVNKK-----G-VSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.++...|+.++|...++...... + ....+...+..++.+.|+.++|...+.+..+..
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 66888999999999998877642 1 123467778888999999999999999887643
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=5.9e-06 Score=70.13 Aligned_cols=189 Identities=14% Similarity=0.100 Sum_probs=156.4
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
+.+|-...-..+...+...|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+-.+ -+||...|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555566678889999999999999999976 4678889999999999999999988877 3678889999988
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhh
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEM 230 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 230 (293)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| -..+|..+-.+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 888888889999988776541 1111222233478999999999876 4444 45588888888999999999
Q ss_pred chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
+...|..-....|.+...||++-.+|.+.|+-.+|...+.+..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999988866
No 108
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.66 E-value=5.6e-08 Score=50.14 Aligned_cols=34 Identities=38% Similarity=0.688 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 143 (293)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888999999999998888888887
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=5.3e-05 Score=63.72 Aligned_cols=248 Identities=8% Similarity=-0.010 Sum_probs=161.4
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
.-...|..++..| ..+++...++..+.+.+. .+-...|.....-.+...|+-++|....+.... +-..+.+.|..
T Consensus 6 KE~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv 80 (700)
T KOG1156|consen 6 KENALFRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHV 80 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHH
Confidence 3444566666644 567788888888888774 333344554444456677888888888877665 55566777888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+.-.+-...++++|++.|.....- +...|.-+.-.-++.|+++.....-.++.+.... ....|..+..+..-.|+.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHH
Confidence 887787888999999999887643 4556665555566677777777777776664222 445677777777777888
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHH------HHHHhcCChHHHHHHHHhCC-CCchHh-HHHHHHHHHHhcCChhhch
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVV------DMYGRAGLLEEAEAFIREMP-IEAEWS-VWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~a~ 232 (293)
..|..+++...+...-.|+...+.-.. ....+.|.+++|.+-+.... ...|-. .-..-...+.+.++.++|.
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 888888777776333345544443222 23455677777777666552 111221 1122233367777888888
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHh
Q 036775 233 PIRQELVNKKGVSVGTFALMSNTFA 257 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~ 257 (293)
.++..+....|.+...|..+..++.
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHH
Confidence 8888887777777777777776665
No 110
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.61 E-value=8.8e-08 Score=49.37 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
.+|+.++.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 111
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=9.3e-08 Score=48.92 Aligned_cols=33 Identities=33% Similarity=0.431 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 142 (293)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3.5e-05 Score=57.90 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=125.3
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 036775 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFP 142 (293)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 142 (293)
.+.+.+.. .....+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+- -
T Consensus 94 ~l~E~~a~-~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d 167 (299)
T KOG3081|consen 94 SLYELVAD-STDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D 167 (299)
T ss_pred HHHHHHHh-hccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence 34444443 3333343444455667889999999999998733 3344444456678889999999999999863 3
Q ss_pred cHhHHHHHHHHHh----cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHH
Q 036775 143 DDVTFIALISACS----HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWG 216 (293)
Q Consensus 143 ~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~ 216 (293)
+..|.+.|..++. ..+.+.+|.-+|++|.+ ..+|+..+.+-...++...|++++|..++++. +...++.+..
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~ 245 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA 245 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence 6677777777765 34678999999999986 67899999999999999999999999999998 3334555555
Q ss_pred HHHHH-HHhcCChhhchHHHHHHHhhcCCc
Q 036775 217 ALLNA-CRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 217 ~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
.++.. .....+.+...+.+.++....|..
T Consensus 246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 246 NLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 55554 444445566667777777666543
No 113
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=9.4e-08 Score=48.90 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCc
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEP 40 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 40 (293)
+.+||++|.+|++.|+++.|.++|++|.+.| ++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g-v~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQG-VKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 3689999999999999999999999999887 776
No 114
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.57 E-value=0.00027 Score=59.73 Aligned_cols=262 Identities=10% Similarity=0.059 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCch---HHHHHHHHHHhcccCcchHHHHHHHHHHhhc----------C
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPN---EATLVNVLSACSSISALSFGQYVHSYISTRY----------D 73 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~ 73 (293)
..|..+...|-..|+++.|..+|++..+-. .+-- ..+|......-.+..+++.|.++++....-. +
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 357778888899999999999999987643 2221 3355555555566778888888887765410 1
Q ss_pred CCCc------hhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCcH
Q 036775 74 LSVS------NLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVIS---GLAMNGCGRQALQLFSLMIINGVFPDD 144 (293)
Q Consensus 74 ~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p~~ 144 (293)
.++. ..+|...++.--..|-++....+|+++.+-.+.|=..+++ -+-.+.-++++.++|++-...=..|++
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 1111 1233444555556677888888888887654444433333 233455677888888765443233444
Q ss_pred -hHHHHHHHHHh---cCCChhHHHHHHHHhhhhcCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhC--CCCch--HhH
Q 036775 145 -VTFIALISACS---HGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREM--PIEAE--WSV 214 (293)
Q Consensus 145 -~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~--~~~ 214 (293)
..|++-+.-+. ....++.|..+|++..+ +++|... .|......=.+.|....|+.++++. ++++. ...
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 23444444333 34578899999999986 7776543 2222222333468888899999888 33433 336
Q ss_pred HHHHHHHHHhcCChhhchHHHHHHHhhcCCch--hhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSV--GTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
|+..|.-....=.......+|++..+.-|.+. .........-++.|..+.|..++.-
T Consensus 625 yni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 625 YNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 77777765555555666677776666543221 1223334445667777777777754
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.55 E-value=0.00024 Score=58.77 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=83.3
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC---CCCc-hHhHHHHHHHHHHhcCChhhchHHH
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM---PIEA-EWSVWGALLNACRIHRNDEMFDPIR 235 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (293)
.+.....++++.....+.|+. +|..+++.-.+..-+..|..+|.+. +..+ ++..+++++.-| ..++.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHH
Confidence 444455555555433344433 5777777777888888888888888 2233 555566665544 467888888888
Q ss_pred HHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 236 QELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 236 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
+...+..+.++.-....+.-+...++-..+..+|++....++.|+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8888888877777777777788888888888888888777666554
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=4.1e-05 Score=63.67 Aligned_cols=219 Identities=13% Similarity=0.026 Sum_probs=139.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
++.+.+.|++++|.....++... .+-+...+..-+-+..+.+.++.|..+.+.- .+...+..-+..=..+..+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHcc
Confidence 45677889999999999999885 3445667777788889999999998555442 122222222223345566889
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-cCCChhHHHHHHHHhh
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-HGGLVDQGLILFKAMS 171 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 171 (293)
..++|+..++....-|..+...-.+.+.+.|++++|+++|..+.+.+.. + +..-+.+-+ ..+-...+ ++.+..
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~-~~~q~v- 167 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQV-QLLQSV- 167 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhH-HHHHhc-
Confidence 9999999999655556667777788899999999999999999876543 2 222222111 11111111 112222
Q ss_pred hhcCCCcchhHHH---HHHHHHHhcCChHHHHHHHHhC----------CCCc--h----Hh-HHHHHHHHHHhcCChhhc
Q 036775 172 TVYEIVPQTQHYA---CVVDMYGRAGLLEEAEAFIREM----------PIEA--E----WS-VWGALLNACRIHRNDEMF 231 (293)
Q Consensus 172 ~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~----------~~~~--~----~~-~~~~l~~~~~~~~~~~~a 231 (293)
...| ..+|. ...-.+...|++.+|+++++.. +... + .. .-..+..++...|+.++|
T Consensus 168 ---~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 168 ---PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred ---cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2223 22333 3444677899999999999876 1111 1 11 122344446788999999
Q ss_pred hHHHHHHHhhcCCch
Q 036775 232 DPIRQELVNKKGVSV 246 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~ 246 (293)
..++....+..++|.
T Consensus 244 ~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHhcCCCc
Confidence 999988888776554
No 117
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.52 E-value=7.2e-06 Score=66.80 Aligned_cols=124 Identities=12% Similarity=0.059 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC 222 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~ 222 (293)
....+++..+...++++.|..+++++.+ . .|+ ....+++.+...++-.+|.+++++. ...| +..........+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~-~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRE-R--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHh-c--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455666777788899999999999986 2 254 4556888888888889999998888 3233 555555556668
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
...++++.|..+.+++.+..|.+..+|..|..+|...|++++|.-.++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998764
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.00027 Score=65.52 Aligned_cols=261 Identities=10% Similarity=-0.008 Sum_probs=165.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccC-C----CchH--HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-c----hh
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKE-A----EPNE--ATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-S----NL 79 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~-~----~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~ 79 (293)
....+...|++++|..++......-. . .+.. .....+...+...|+++.|...++.... . .+. + ..
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~ 492 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALA-E-LPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-c-CCCccHHHHHH
Confidence 34455677899999998887754310 0 1111 1222223345678999999999988766 2 221 1 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-c
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK-----D----MISWSTVISGLAMNGCGRQALQLFSLMIIN----GVF--P-D 143 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~ 143 (293)
..+.+...+...|++++|...+++.... + ..++..+...+...|++++|...+++.... |.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3456667778899999999999887632 1 124455667788899999999998886542 221 1 2
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC-CCc--chhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHH
Q 036775 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYE-IVP--QTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWG 216 (293)
Q Consensus 144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~ 216 (293)
...+..+...+...|++++|...+++...... ..+ ....+..+...+...|+.++|.+.+++. ........+.
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 23344555566778999999999888754211 112 2334455667788899999999888776 1111111111
Q ss_pred -----HHHHHHHhcCChhhchHHHHHHHhhcCCchh----hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 217 -----ALLNACRIHRNDEMFDPIRQELVNKKGVSVG----TFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 217 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+..+...|+.+.+...+............ .+..+..++...|++++|...+++...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1123345678888888887665543222221 145677888899999999999998765
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.7e-05 Score=64.74 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=148.9
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc--ccHHHHHHHHHhc
Q 036775 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM--ISWSTVISGLAMN 122 (293)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~ 122 (293)
..+=++-+...+++++|.+....+.. +.+.+...+..-+-+..+.+.+++|+.+.+.-..... .-+---.-+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 34455667889999999999999987 5566666777777788999999999977665442211 1112334455678
Q ss_pred CCHHHHHHHHHHHHhCCCCCc-HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHH
Q 036775 123 GCGRQALQLFSLMIINGVFPD-DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 199 (293)
+..++|+..++- ..++ ..+...-...+.+.|++++|..+|+.+.+ .+ .++. ..-..++. .+---.+
T Consensus 93 nk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k-n~-~dd~d~~~r~nl~a----~~a~l~~ 161 (652)
T KOG2376|consen 93 NKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK-NN-SDDQDEERRANLLA----VAAALQV 161 (652)
T ss_pred ccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CchHHHHHHHHHHH----HHHhhhH
Confidence 999999999983 3333 33555555667899999999999999986 23 2322 22222221 1111222
Q ss_pred HHHHHhCCCCchHhHHHHH---HHHHHhcCChhhchHHHHHHHhh--------cCC--ch-----hhHHHHHHHHhcCCC
Q 036775 200 EAFIREMPIEAEWSVWGAL---LNACRIHRNDEMFDPIRQELVNK--------KGV--SV-----GTFALMSNTFAGADR 261 (293)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~--------~~~--~~-----~~~~~li~~~~~~g~ 261 (293)
. +.+..+..|+ .+|..+ ...+...|++..|+++++...+. ... ++ ..-..|..++-..|+
T Consensus 162 ~-~~q~v~~v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 162 Q-LLQSVPEVPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred H-HHHhccCCCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 2 5566655553 234443 34468899999999999888321 111 11 123456777888999
Q ss_pred HHHHHHHHHHHHHcCCCCCCccceeeecC
Q 036775 262 WEDANKIRDEIRRMGLKKKTGCSWIEVNP 290 (293)
Q Consensus 262 ~~~a~~~~~~m~~~~~~p~~~~~~~~i~~ 290 (293)
.++|.+++...++.+ .+|....-+..+|
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NN 267 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNN 267 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcc
Confidence 999999999988865 4555444444443
No 120
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=9.9e-05 Score=57.91 Aligned_cols=126 Identities=14% Similarity=0.089 Sum_probs=80.5
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC-CC-chHhHHHH-HHHHHHhcC
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP-IE-AEWSVWGA-LLNACRIHR 226 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~~-l~~~~~~~~ 226 (293)
+..++.-..++++++.+++.... .-...|..-+ .+..+++..|++.+|+++|-++. .+ .|..+|-+ |.++|...+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 33333444566777777776664 3333334333 47788889999999999998882 11 34555655 455578888
Q ss_pred ChhhchHHHHHHHhhc-CCchh-hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 227 NDEMFDPIRQELVNKK-GVSVG-TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 227 ~~~~a~~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
.++.|..++ .+.. +.+.. ....+..-|-+.+.+--|-+.|+++.. ..|++.
T Consensus 443 kP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pE 495 (557)
T KOG3785|consen 443 KPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPE 495 (557)
T ss_pred CchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcc
Confidence 888886654 3333 33332 344456668888899889999988876 445544
No 121
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=0.00045 Score=59.52 Aligned_cols=168 Identities=10% Similarity=-0.065 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAV 84 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 84 (293)
|...|..|.-+..+.|+++.+.+.|++.... ..-....|..+-..+...|.-..|..+++.......-+++...+-..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~--~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPF--SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 6677888888888889999888888887653 34445566677777777777777777777665422223333333333
Q ss_pred HHHHHH-cCCHHHHHHHHHHhh--------------------------------------------------hC---Ccc
Q 036775 85 INMYVK-CGDVGIAIQVFNMLA--------------------------------------------------YK---DMI 110 (293)
Q Consensus 85 ~~~~~~-~~~~~~A~~~~~~~~--------------------------------------------------~~---~~~ 110 (293)
-..|.+ .+.+++++.+-.+.. +. |+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 333332 234444443333322 11 221
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 174 (293)
.-..+.--|+..++.+.|++..++..+.+..-+...|..+.-.+...+++.+|+.+.+...+..
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 2122223356677888888888888877666677788888878888888888887777665533
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=3.8e-06 Score=58.47 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 184 ACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 184 ~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
..+...+...|++++|.+.|+.. ...| +...+..+...+...|+++.|...++...+..|.++.++..+..++...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 33444444445555555444444 1122 233344444444444555555555554444444444555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 036775 262 WEDANKIRDEIRR 274 (293)
Q Consensus 262 ~~~a~~~~~~m~~ 274 (293)
+++|.+.|++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (135)
T TIGR02552 101 PESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.00016 Score=64.23 Aligned_cols=212 Identities=10% Similarity=0.124 Sum_probs=135.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccC-CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
|+.--..-+.++...+-..+-+++++++.-.+. +.-+...-+.++-...+. +...+.+..+++-. ...+ .
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdn---yDa~-----~ 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAP-----D 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhcc---CCch-----h
Confidence 555556667788888888888888888754321 111122223333333332 23333333333322 1111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh-------------------------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAY-------------------------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
+.......+-+++|..+|++... .....|..+..+-.+.|...+|.+-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 12223334445555555544320 14568999999999999999999988664
Q ss_pred CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHH
Q 036775 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218 (293)
Q Consensus 139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 218 (293)
-|+..|..++....+.|.+++-.+++...++ ..-.|.. =+.|+-+|++.+++.+.++++. .||......+
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQV 1200 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHH
Confidence 2677899999999999999999999887776 4444544 4679999999999998877664 4666656666
Q ss_pred HHHHHhcCChhhchHHHHHH
Q 036775 219 LNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~ 238 (293)
..-|...+.++.|.-++...
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHHh
Confidence 66677777777777666543
No 124
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.47 E-value=1.8e-05 Score=67.73 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=18.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
.|...+..-+-..|+...|..-|-+.
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHhh
Confidence 45666677777788888888776544
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=2.7e-05 Score=63.38 Aligned_cols=161 Identities=11% Similarity=-0.010 Sum_probs=100.7
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHH
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGN 82 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 82 (293)
.|+...+...+.+......-..+-.++.+-.+. .-...-|. ........|+++.|+..++.+.+ ..|.|+....
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~ 344 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYG-RALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLE 344 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHH-HHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHH
Confidence 355555666665554444333333333322221 11122233 23334466778888888888766 4455555556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
.....+.+.++.++|.+.++++...+ ...+-.+.+++.+.|++.+|..++++...... -|+..|..|..+|...|+
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCc
Confidence 66777888888888888888877543 33456667778888888888888887776543 377788888888888888
Q ss_pred hhHHHHHHHHh
Q 036775 160 VDQGLILFKAM 170 (293)
Q Consensus 160 ~~~a~~~~~~~ 170 (293)
..++.....+.
T Consensus 424 ~~~a~~A~AE~ 434 (484)
T COG4783 424 RAEALLARAEG 434 (484)
T ss_pred hHHHHHHHHHH
Confidence 77777665554
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=4.4e-05 Score=62.19 Aligned_cols=118 Identities=14% Similarity=0.048 Sum_probs=87.3
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a 231 (293)
+...|+.++|+..++.+.. ..+-|..-.......+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4466788888888888775 44555666666777888888888888888887 45565 44556666778888888888
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..+++......|.++..|..|.++|...|+..++.....+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888888888888888888888887777777766665543
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00025 Score=53.12 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWST---VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
..++-+...+|+.+.|..+++++...=+.++.. -.--+-..|++++|+++|+.+.+.++ .|..++-.-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcC
Confidence 334444455566666666666655431111111 11123446777777777777776653 35666666666666667
Q ss_pred ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHH-Hh--cCChhhchH
Q 036775 159 LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNAC-RI--HRNDEMFDP 233 (293)
Q Consensus 159 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~-~~--~~~~~~a~~ 233 (293)
+--+|++-+....+ .+..|...|.-+...|...|++++|.-.++++ -+.|... .+..+...+ .. ..+.+.+..
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 66677777777765 45667777777777777777777777777777 3344333 344444442 22 234556667
Q ss_pred HHHHHHhhcCCc
Q 036775 234 IRQELVNKKGVS 245 (293)
Q Consensus 234 ~~~~~~~~~~~~ 245 (293)
++.+..+..+.+
T Consensus 213 yy~~alkl~~~~ 224 (289)
T KOG3060|consen 213 YYERALKLNPKN 224 (289)
T ss_pred HHHHHHHhChHh
Confidence 777776666533
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.6e-05 Score=59.61 Aligned_cols=199 Identities=12% Similarity=-0.020 Sum_probs=136.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH-HHHH
Q 036775 78 NLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA-LISA 153 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~ 153 (293)
..-+++.+..+.+..++..|++++..-.++ +....+.|..+|.+..++..|-..|+++-.. -|...-|.. -...
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 334566677777778888888888766554 4455677778888888888888888887654 344443332 2234
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (293)
+-+.+.+.+|.++...|.. . ++.. +...-.......+++..+..+++..+.+.+..+.+.......+.|++++|
T Consensus 88 LY~A~i~ADALrV~~~~~D--~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD--N--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHhcccHHHHHHHHHhcC--C--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 5577888888888888764 1 2221 11111222345788888888888886556666665555556789999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
.+-|+...+-..-++..--++.-+.-+.|+++.|.++..++.++|++-.+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 999988887665444443334555667789999999999999999986655
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=2.8e-05 Score=54.81 Aligned_cols=125 Identities=7% Similarity=0.014 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCC-chHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc--hhHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAE-PNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS--NLVGNAV 84 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 84 (293)
.|..++..+ ..++...+...++.+.+..+.. ......-.+...+...|++++|...|+.+.. ....++ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 445555544 2566666666666665542111 1112222233445566666666666666655 221111 1123344
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSL 134 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~ 134 (293)
...+...|++++|+..++....+ ....+......+.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555566666666666543322 222344445555556666666555544
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=1.1e-05 Score=56.07 Aligned_cols=94 Identities=11% Similarity=-0.018 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHH
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGL 119 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~ 119 (293)
.....+...+...|++++|.+.++.+.. ..+.+...+..+...+.+.|++++|...+++..+. +...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3444555566677777777777777765 33456666677777777777777777777776543 344566666777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 036775 120 AMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~~~ 138 (293)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777664
No 131
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=6.2e-05 Score=64.56 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=101.4
Q ss_pred HHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHH
Q 036775 50 SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQAL 129 (293)
Q Consensus 50 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 129 (293)
.+......|.+|..+++.+.. . ..-..-|..+...|+..|+++.|+++|-+. ..++-.|..|.+.|+|+.|.
T Consensus 740 eaai~akew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 344566677777777776654 1 122233566677788888888888888644 24566777888888888887
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036775 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIE 209 (293)
Q Consensus 130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 209 (293)
++-.+. .|.......|.+-..-+-+.|++.+|.++|-.... |+. -|.+|-+.|..+..+++.++-.-.
T Consensus 812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 776554 34444555666666666677777777776654432 443 455677777777777776665211
Q ss_pred chHhHHHHHHHHHHhcCChhhchHHH
Q 036775 210 AEWSVWGALLNACRIHRNDEMFDPIR 235 (293)
Q Consensus 210 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 235 (293)
.-..|...+..-+-..|+.+.|+..|
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 12223444444455566666655544
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=7.9e-05 Score=66.59 Aligned_cols=217 Identities=9% Similarity=0.038 Sum_probs=147.6
Q ss_pred CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHH
Q 036775 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISG 118 (293)
Q Consensus 39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 118 (293)
+.+...+..|+..+...+++++|.++.+...+ ..|.....|-.+...+.+.++.+.+..+ .++..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~ 92 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDS 92 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhh
Confidence 34466788899999999999999999997665 3334444455555567777776655444 34445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (293)
.....++.-+..+...|.+.+- +...+..+..+|-+.|+.++|..+|+++.+ .. +-|..+.|.+...|+.. ++++
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred cccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHH
Confidence 5556667666666666766432 455888899999999999999999999997 33 56788999999999999 9999
Q ss_pred HHHHHHhC-CCCchHhHHHHHHHH-----HHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775 199 AEAFIREM-PIEAEWSVWGALLNA-----CRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 199 a~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (293)
|++++.+. ...-+..-|+.+... .....+.+...++.+++.... ..-..++..+-..|...++|+++..+++
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99998876 111111112222111 122233444444444444432 2334566777788888999999999999
Q ss_pred HHHHc
Q 036775 271 EIRRM 275 (293)
Q Consensus 271 ~m~~~ 275 (293)
.+.+.
T Consensus 248 ~iL~~ 252 (906)
T PRK14720 248 KILEH 252 (906)
T ss_pred HHHhc
Confidence 98774
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.35 E-value=3.3e-05 Score=54.45 Aligned_cols=112 Identities=9% Similarity=0.030 Sum_probs=55.1
Q ss_pred CCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH----hHHHHHHHHHHhcCCh
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW----SVWGALLNACRIHRND 228 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~ 228 (293)
.++...+...++.+.... +.+ ......+...+...|++++|...|+.. ...|+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555421 112 122223444555556666666555555 111221 1223334445556666
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
+.|...++.. ...+..+..+.....++.+.|++++|...|+.
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655442 22233444556666666677777777666654
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00011 Score=54.95 Aligned_cols=181 Identities=12% Similarity=0.030 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHhhhC--------Cc-ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH-HHHhcCCCh
Q 036775 91 CGDVGIAIQVFNMLAYK--------DM-ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI-SACSHGGLV 160 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~~--------~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~ 160 (293)
..+.++..+++.++... +. ..|..++-+....|+.+.|...++++.+.= |.+.-...+= --+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 35778888888887632 11 235556666777899999999999988763 4432222111 123457889
Q ss_pred hHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC--CCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 161 DQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM--PIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 161 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
++|.++++.+.++ -+-|..++-.-+-..-..|+--+|++-+.+. ....|...|.-+...|...|+++.|...++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999873 2455666666565666677777777766665 45567888999999999999999999999999
Q ss_pred HhhcCCchhhHHHHHHHHhcC---CCHHHHHHHHHHHHHc
Q 036775 239 VNKKGVSVGTFALMSNTFAGA---DRWEDANKIRDEIRRM 275 (293)
Q Consensus 239 ~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 275 (293)
.-..|.++..+..+...+--. .+.+-|.++|.+-.+.
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 988898888888887775443 3567778888776653
No 135
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.34 E-value=8.5e-07 Score=44.16 Aligned_cols=30 Identities=30% Similarity=0.494 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGV 140 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 140 (293)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.33 E-value=0.00038 Score=55.00 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=59.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHh----CCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----CCcchh-H
Q 036775 115 VISGLAMN-GCGRQALQLFSLMII----NGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYE----IVPQTQ-H 182 (293)
Q Consensus 115 li~~~~~~-~~~~~a~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~-~ 182 (293)
+...|... |++++|.+.|.+..+ .| .+. ..++..+...+.+.|++++|.++|++.....- .+.+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34445555 667777776666543 22 111 23455556666777777777777776654110 111221 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCc------hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhh
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREM-PIEA------EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGT 248 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 248 (293)
+...+-++...|+...|.+.+++. ...| .......|+.++ ..|+.+.............+.|++-
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~ 270 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWK 270 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHH
Confidence 223333555567777777777665 2222 222344444444 3444444444444443333444333
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=8.8e-05 Score=64.36 Aligned_cols=164 Identities=10% Similarity=-0.025 Sum_probs=88.3
Q ss_pred cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CcccHHHHHHHHHhcCCHHHHHHH
Q 036775 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMNGCGRQALQL 131 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 131 (293)
...|.+++|..+|++-+. |..|=..|...|.+++|.++-+.-.+- =..||..-..-+-..++.+.|++.
T Consensus 811 ieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 344555555555555444 122333444455555555554322111 123555555566666777777776
Q ss_pred HHHHH----------hCCC---------CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775 132 FSLMI----------INGV---------FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192 (293)
Q Consensus 132 ~~~m~----------~~g~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (293)
|++.. ...+ .-|...|.-....+-..|+.+.|+.+|...+. |.++++..|-
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCI 950 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEee
Confidence 65531 1110 11333333334444456667777666666553 4456666666
Q ss_pred cCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 193 AGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 193 ~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
.|+.++|-++-++-+ |......|.+.|-..|++.+|..+|.+..
T Consensus 951 qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777777766654 33344456666777777777777776554
No 138
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00034 Score=57.78 Aligned_cols=156 Identities=9% Similarity=-0.028 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc--c----hhHHHHHHHH
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP--Q----TQHYACVVDM 189 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~----~~~~~~l~~~ 189 (293)
.++..+..+++.|.+-+....... -+..-++..-.++...|.+.++...-....+. |-.. + ...+..+..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHHHHHHHHHhhhh
Confidence 333334444444444444444332 12223333444455555555544443333321 1100 0 1122233446
Q ss_pred HHhcCChHHHHHHHHhC---CCCchHhH-------------------------HHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775 190 YGRAGLLEEAEAFIREM---PIEAEWSV-------------------------WGALLNACRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~---~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (293)
|.+.++++.++..|++. -..|+..+ -..-...+.+.|++..|...|.++.+.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 66677788888887765 11122111 011123367889999999999999998
Q ss_pred cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 242 KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.|.|...|....-+|.+.|.+..|.+-.+.-.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 899999999999999999999888876554433
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.28 E-value=1.3e-06 Score=43.45 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRRMGL 277 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 277 (293)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999999875
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.27 E-value=0.00089 Score=52.54 Aligned_cols=226 Identities=12% Similarity=0.023 Sum_probs=157.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHccC-----------CCchHHHHH--HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKE-----------AEPNEATLV--NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~-----------~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
.+.+.|.+++|..=|+...+..+ ..+....+. ..+..+...|+...|......+.+ -.+.+...+
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHH
Confidence 56788999999999999887531 011111222 234446677899999999999887 567788888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh---CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHH----HH----
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAY---KDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI----AL---- 150 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~l---- 150 (293)
..-..+|...|++..|+.=++...+ -++.++-.+-..+...|+.+.++...++..+. .||...+- .+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 8889999999999999887776654 36667777788888899999999888888764 45543211 11
Q ss_pred -----HHHHhcCCChhHHHHHHHHhhhhcCCCcc-----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHH
Q 036775 151 -----ISACSHGGLVDQGLILFKAMSTVYEIVPQ-----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGAL 218 (293)
Q Consensus 151 -----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l 218 (293)
+......+++.++.+..+...+ . .|. ...+..+-.++...|++.+|++.-.+. .+.|+ +.++---
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 1123355677777777776664 2 232 233455667778889999998887776 55665 5677666
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGVSVG 247 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (293)
..+|.-...++.|..-|+...+..+.+..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 77787778888888888877776655443
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00014 Score=63.24 Aligned_cols=242 Identities=12% Similarity=0.079 Sum_probs=156.0
Q ss_pred chHHHHHHHH--HHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCC--------
Q 036775 5 DVVSWTTMIG--GYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDL-------- 74 (293)
Q Consensus 5 ~~~~y~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------- 74 (293)
|..|-.++++ .|..-|+.+.|.+-.+-++. ...|..+.+.|.+.++++-|.-.+-.|...+|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4455555554 35567899999777665543 468999999999999988888777777653332
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
.++ ..-.-..-.-...|.+++|+.+|++.++.| .|-..|-..|.|++|.++-+.=-+-.+ ..||-.-...+
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYL 868 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHH
Confidence 121 222233334567799999999999887654 455567778999999998765222222 24666666666
Q ss_pred hcCCChhHHHHHHHHhhhh--------cCC----------CcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHH
Q 036775 155 SHGGLVDQGLILFKAMSTV--------YEI----------VPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~--------~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 216 (293)
...++.+.|+++|++.... ... ..|...|.....-+...|..+.|+.++...+ -|.
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------D~f 942 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------DYF 942 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------hhh
Confidence 7778888888887765320 000 1123334444444444566666666666553 155
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
++++..+-+|+.++|.++-++- .|...-..|.+.|-..|++.+|...|-+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6666666778888777665432 344455567889999999999998887654
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.25 E-value=4.6e-05 Score=59.93 Aligned_cols=142 Identities=12% Similarity=0.062 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+.+|-.+|...-+.+..+.|..+|.+.++.+....+.....+.+.. ...++.+.|..+|+...+ .++.+...|...+
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLK--KFPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHH
Confidence 3578899999999999999999999998664344444444444433 234667779999999988 5677788888889
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
+.+.+.++.+.|..+|++.... ....|...++-=.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 9999999999999999988753 3357888888888899999999999888774 344444444443
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=2.1e-05 Score=51.06 Aligned_cols=80 Identities=13% Similarity=0.173 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHhcCC--------ChhHHHHHHHHhhhhcCCCcchhH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACSHGG--------LVDQGLILFKAMSTVYEIVPQTQH 182 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 182 (293)
-...|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|.. .+++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666777999999999999999999 899999999999877553 34467888999987 789999999
Q ss_pred HHHHHHHHHh
Q 036775 183 YACVVDMYGR 192 (293)
Q Consensus 183 ~~~l~~~~~~ 192 (293)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.24 E-value=5.1e-05 Score=62.31 Aligned_cols=120 Identities=16% Similarity=0.116 Sum_probs=96.4
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
+.+.+......+++......+++.+..++-+.... -..|..++++.|...|..+.++.+++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556666677788888888888899888887743 245677999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (293)
++.+|..+.+.|++..|.++...|.. .+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988875 56556666666555555544
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=4.1e-05 Score=51.79 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=8.9
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 036775 186 VVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+..++.+.|++++|...|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 344444444444444444433
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=3.1e-05 Score=53.98 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
...-.+...+...|++++|..+|+.. ...| +..-|..|..++...|++++|...|.......|.++..+-.+..++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44555666778889999999999888 4445 444677777778888999999999998888888889999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 036775 259 ADRWEDANKIRDEIRR 274 (293)
Q Consensus 259 ~g~~~~a~~~~~~m~~ 274 (293)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999987665
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=2.2e-05 Score=50.33 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (293)
+..+...+...|++++|..++++. ...|+ ...+..+...+...++++.|...++......+.+..++..+...+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666667777777777777766 33332 3455556666777777777777777777766666677777788888888
Q ss_pred CHHHHHHHHHHHHH
Q 036775 261 RWEDANKIRDEIRR 274 (293)
Q Consensus 261 ~~~~a~~~~~~m~~ 274 (293)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 148
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0012 Score=52.11 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=92.3
Q ss_pred cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHH
Q 036775 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQAL 129 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 129 (293)
....++..|..+++.-.. .+-.....+-.-+..++...|++++|...|..+.+. +...+-.|..++.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 344555555555555433 222222222233455555666666666666555432 3344555555555556666666
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 036775 130 QLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PI 208 (293)
Q Consensus 130 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~ 208 (293)
.+-.... -+.-....++....+.++-++-.++.+.+... .+--.+|.......-.+.+|++++++. ..
T Consensus 112 ~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 112 SIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT------LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5544421 12223333333344555555555555444421 111122333333333456666666665 33
Q ss_pred CchHhHHHHHHHH-HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHH
Q 036775 209 EAEWSVWGALLNA-CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTF 256 (293)
Q Consensus 209 ~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~ 256 (293)
.|+....|.-+.. |.+...++.+..+++-..++.|.++...|....-.
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~ 229 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNL 229 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4444444443333 45556666666666666666665555555444433
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=5.5e-05 Score=48.42 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
+|..+...+...|++++|...+++..+.. +.+...+..+...+...++++.|.+.++.... ..+.+..++..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHH
Confidence 34556667777788888888888776642 33335566666667777777777777777665 233344556666666
Q ss_pred HHHcCCHHHHHHHHHHhh
Q 036775 88 YVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~ 105 (293)
+...|+.++|...++...
T Consensus 78 ~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 78 YYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHhHHHHHHHHHHHH
Confidence 777777777776666554
No 150
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.00085 Score=59.66 Aligned_cols=176 Identities=9% Similarity=-0.027 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhhhCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775 94 VGIAIQVFNMLAYKDM---ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 170 (293)
...|+..|-+..+.|+ ..|..|...|...-+...|.+.|+...+.... +..........|.+..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555544444433 34566666665555666666666665544322 4445555556666666666666553222
Q ss_pred hhhcCCCcchhH--HHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCch
Q 036775 171 STVYEIVPQTQH--YACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 171 ~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
-+ .-+.-... |....-.|.+.+++.+|...|+.. ...| |...|..+..+|...|.+..|.++|.++....|.+.
T Consensus 553 ~q--ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 553 AQ--KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hh--hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22 11111111 222333355556666666666555 3334 334566666666666666666666666655555444
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
..--......+..|++.+|...+...
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333344445556666666555544
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.14 E-value=0.0002 Score=52.07 Aligned_cols=111 Identities=8% Similarity=-0.044 Sum_probs=49.9
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHH
Q 036775 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLA 120 (293)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 120 (293)
+..+...+...|++++|...+++..+....++ ....+..+...+.+.|++++|...+++..+. +...+..+..++.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33444444445555555555555443111111 1234444555555555555555555544432 2223333334444
Q ss_pred hcCC--------------HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 121 MNGC--------------GRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 121 ~~~~--------------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
..|+ +++|.+++++.... .|+ .|..++..+...|+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cch--hHHHHHHHHHhcCc
Confidence 3333 45666666665543 233 35555555554443
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=7.3e-06 Score=51.77 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775 157 GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 205 (293)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3555666666666554211111233333455555556666666555555
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=1.5e-05 Score=50.29 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHH
Q 036775 19 RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAI 98 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (293)
.|+++.|+.+++++....+..|+...+..+..++.+.|++++|..+++. .+ .+ +.+....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888888877542122445555567777788888888777777 22 11 122333345577777777777777
Q ss_pred HHHHH
Q 036775 99 QVFNM 103 (293)
Q Consensus 99 ~~~~~ 103 (293)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.11 E-value=0.00017 Score=48.66 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=38.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC--C----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CcHhHHHHHHHHH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK--D----MISWSTVISGLAMNGCGRQALQLFSLMIINGVF--PDDVTFIALISAC 154 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~--~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~ 154 (293)
.++..+.+.|++++|.+.|+.+.+. + ...+..+..++.+.|++++|...|+.+...... .....+..+..++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3344444444455554444444321 1 112333444444445555555555544432111 0122333444444
Q ss_pred hcCCChhHHHHHHHHhhh
Q 036775 155 SHGGLVDQGLILFKAMST 172 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~ 172 (293)
.+.|+.++|.+.++++.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHhCChHHHHHHHHHHHH
Confidence 444555555555554443
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.0059 Score=53.87 Aligned_cols=223 Identities=11% Similarity=0.059 Sum_probs=149.8
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 93 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (293)
....+++.+|++...++.+. .||.. |..++.+ ..+.|..++|..+++.... .+.. |..+...+-.+|-..++
T Consensus 19 ~ld~~qfkkal~~~~kllkk---~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK---HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH---CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhh
Confidence 34678999999999998874 45543 3344444 5789999999988888765 2222 77888999999999999
Q ss_pred HHHHHHHHHHhhhCCcc--cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC----------Chh
Q 036775 94 VGIAIQVFNMLAYKDMI--SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG----------LVD 161 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------~~~ 161 (293)
.++|..+|++..+.++. -...+..+|.|.+++.+-.++=-+|-+. .+-+.+.|-++++...+.. -..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999876444 4445667788887776544443333332 3335667777777665332 134
Q ss_pred HHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh-C-CCCc--hHhHHHHHHHHHHhcCChhhchHHHHH
Q 036775 162 QGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE-M-PIEA--EWSVWGALLNACRIHRNDEMFDPIRQE 237 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (293)
-|.+.++.+.++.|.--+..-.-.-...+...|++++|.+++.. . ...+ +...-+.-+.-+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 56677777776443212222222334456778999999999943 3 2122 233334455667888999999999988
Q ss_pred HHhhcCCc
Q 036775 238 LVNKKGVS 245 (293)
Q Consensus 238 ~~~~~~~~ 245 (293)
+...++.+
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 88888776
No 156
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.0031 Score=52.38 Aligned_cols=232 Identities=10% Similarity=-0.047 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC--c----hhHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV--S----NLVGN 82 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~----~~~~~ 82 (293)
+..+..+.-+..++..|++-+..... +.-+..-++..-.++...|.+......-....+ .|-.. + .....
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~e---l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALE---LATDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh---HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHHHHHHHHHHHHHHH
Confidence 34566677778888999998888877 443333444444557777777666655555444 12110 0 11122
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
.+..+|.+.++++.|+..|.+...+... -....+....++++.......-.+...- .-...-...+.+.|++..
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~pe~A-~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYINPEKA-EEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHhccCHHH
Confidence 3444677778889999988886543111 1122233334444444444333222211 111112344556666666
Q ss_pred HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 163 GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 163 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
|...|.+++. ..+-|...|+...-+|.+.|.+..|+.--+.. ...|+.. .|..=..++....+++.|...|++..+
T Consensus 377 Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666664 22445566666666666666666666655444 3334332 444444445555666666666666666
Q ss_pred hcCCchhhHHHH
Q 036775 241 KKGVSVGTFALM 252 (293)
Q Consensus 241 ~~~~~~~~~~~l 252 (293)
.+|.+...-..+
T Consensus 455 ~dp~~~e~~~~~ 466 (539)
T KOG0548|consen 455 LDPSNAEAIDGY 466 (539)
T ss_pred cCchhHHHHHHH
Confidence 665444433333
No 157
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.0033 Score=56.32 Aligned_cols=236 Identities=11% Similarity=0.114 Sum_probs=136.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+..|..+..+-.+.|.+.+|++-|-+. -|+..|.-++..+.+.|.+++..+.+...++ ..-.|... ..|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHH
Confidence 456778888888888888887665432 3566788899999999999999888888877 45555555 6888
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcc--------------------------cHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMI--------------------------SWSTVISGLAMNGCGRQALQLFSLMIING 139 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~--------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g 139 (293)
-+|++.+++.+-++++. .|+.. -|..|...+...|++..|.+.-++.
T Consensus 1174 ~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA---- 1246 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA---- 1246 (1666)
T ss_pred HHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc----
Confidence 89999988887766552 23333 3444444444445554444443332
Q ss_pred CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHH
Q 036775 140 VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGA 217 (293)
Q Consensus 140 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~ 217 (293)
-+..||..+-.+|...+.+..|. |.. .++-....-..-++.-|...|-+++.+.+++.. |.+ ...-.|+-
T Consensus 1247 --ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1247 --NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred --cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 14455555555555554443321 111 112223344566777777777777777777765 433 23334444
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
|.-.|++-. +++..+.++.... ..-.--+++++-+..-|.+..=++..-
T Consensus 1319 LaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1319 LAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444332 2222222221111 112234567777777777776666543
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.0003 Score=55.41 Aligned_cols=124 Identities=10% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCCccc---HHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS---WSTVISG-LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
+|..++...-+.+..+.|..+|.+..+....+ |-..... +...++.+.|..+|+...+. ...+...|..-+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 55666666666666667777776666443222 2222222 22245555566666666554 3335555666666666
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcch---hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQT---QHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+.++.+.|..+|+.... .+.++. ..|...+..=.+.|+++.+..+.+++
T Consensus 82 ~~~d~~~aR~lfer~i~--~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAIS--SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCC--TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666664 222222 35666666666666666666666655
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=0.00048 Score=49.86 Aligned_cols=114 Identities=8% Similarity=-0.111 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHH
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQV 100 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 100 (293)
+..+...+..+.+..+..-....|..+...+...|++++|...++........++ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444555532221233345566666667777888888888888765211111 234677778888888888888888
Q ss_pred HHHhhhC---CcccHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 036775 101 FNMLAYK---DMISWSTVISGLA-------MNGCGRQALQLFSLM 135 (293)
Q Consensus 101 ~~~~~~~---~~~~~~~li~~~~-------~~~~~~~a~~~~~~m 135 (293)
+++..+. ...++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8877653 2234555555555 677777665555543
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.99 E-value=0.0026 Score=50.34 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcC-CChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCchH
Q 036775 146 TFIALISACSHG-GLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREMP--------IEAEW 212 (293)
Q Consensus 146 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~ 212 (293)
.+..+...|... |++++|.+.|++..+....... ..++..+...+.+.|++++|.++|++.. .+.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444455667777 8999999999988763221111 3466778889999999999999999871 12222
Q ss_pred h-HHHHHHHHHHhcCChhhchHHHHHHHhhcCC---c--hhhHHHHHHHHhc--CCCHHHHHHHHHHH
Q 036775 213 S-VWGALLNACRIHRNDEMFDPIRQELVNKKGV---S--VGTFALMSNTFAG--ADRWEDANKIRDEI 272 (293)
Q Consensus 213 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~li~~~~~--~g~~~~a~~~~~~m 272 (293)
. .+...+-++...|+...|...++......|. + -.....|+.++-. ...++++..-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 2 2333344567789999999999998876542 2 3345667777764 45677776666654
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.98 E-value=0.00025 Score=57.95 Aligned_cols=85 Identities=9% Similarity=-0.060 Sum_probs=39.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEE 198 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 198 (293)
+...|++++|++.|++..+.... +...|..+..++.+.|++++|...++.+.+. -+.+...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 33445555555555555443322 3344444444455555555555555555431 12233344444455555555555
Q ss_pred HHHHHHhC
Q 036775 199 AEAFIREM 206 (293)
Q Consensus 199 a~~~~~~~ 206 (293)
|...|++.
T Consensus 89 A~~~~~~a 96 (356)
T PLN03088 89 AKAALEKG 96 (356)
T ss_pred HHHHHHHH
Confidence 55555444
No 162
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.97 E-value=0.0014 Score=58.36 Aligned_cols=125 Identities=10% Similarity=0.024 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCcHhHHHHHHHHHh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGV-FPDDVTFIALISACS 155 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~ 155 (293)
.|..|...|....+...|.+.|++.-+- |...+......|++..+++.|..+.-..-+... ..-...|...--.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 4455555555555555555555554433 333444455555555555555555221111100 000011111222334
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+.++..++..-|+...+ --+-|...|..++.+|.+.|++..|.++|.+.
T Consensus 574 ea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred CccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 44555555555554443 12233445555555555555555555555544
No 163
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.97 E-value=0.00012 Score=53.66 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=73.4
Q ss_pred HHHHHh--hhCCcccHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC--------------
Q 036775 99 QVFNML--AYKDMISWSTVISGLAM-----NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG-------------- 157 (293)
Q Consensus 99 ~~~~~~--~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------- 157 (293)
..|++. ..++..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 34566677777777654 467777788888899999999999999999887643
Q ss_pred --CChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 158 --GLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 158 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
.+-+-|++++++|.. .|+-||.+++..+++.+.+.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 245668899999987 8999999999999999876554
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.00025 Score=46.20 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHccCC-CchHHHHHHHHHHhcccC--------cchHHHHHHHHHHhhcCCCCchhH
Q 036775 10 TTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSIS--------ALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
..-|..+...+++.....+|+.+++.| + .|+..+|+.++.+.++.. .....+.+|+.|.. .++.|+..+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 445667777799999999999999998 8 899999999998866543 34456788999988 789999999
Q ss_pred HHHHHHHHHH
Q 036775 81 GNAVINMYVK 90 (293)
Q Consensus 81 ~~~l~~~~~~ 90 (293)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887765
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=0.0005 Score=48.11 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcC
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHG 157 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 157 (293)
.-.+...+...|++++|.++|+....- +..-|-.|..++-..|++++|+..|.......+. |...+-.+-.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence 344555566677777777777766543 3344666666677777777777777777666543 566666667777777
Q ss_pred CChhHHHHHHHHhhhhc
Q 036775 158 GLVDQGLILFKAMSTVY 174 (293)
Q Consensus 158 ~~~~~a~~~~~~~~~~~ 174 (293)
|+.+.|.+.|+..+...
T Consensus 117 G~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 117 DNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 77777777777766533
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.95 E-value=0.00047 Score=50.12 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (293)
+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 44444445555555555555555544322221 234555555555666666666666655541 12233344445555
Q ss_pred HHhcCCh
Q 036775 190 YGRAGLL 196 (293)
Q Consensus 190 ~~~~g~~ 196 (293)
|...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555543
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=4.5e-05 Score=58.38 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=82.8
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhc
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMF 231 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a 231 (293)
+.+.+++.+|+..|.+.++ -.+-|..-|..-..+|.+.|.++.|++--+.. .+.|+.. +|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 5678999999999999986 23446677788889999999999998877766 6667654 899999999999999999
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (293)
...|++..+..|.+......|=.+=.+.+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 99999999988888755555544433333
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.007 Score=48.45 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH 225 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 225 (293)
+.+..+.-+...|+...|.++-.+. ++ |+..-|-..+.+|+..++|++-..+-.. +..+.-|..++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 3444455555666666555554433 22 5666666667777777777666665433 22334566667777777
Q ss_pred CChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHH
Q 036775 226 RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
|+..+|..+..+ ..+..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHH
Confidence 777666666554 1234456666666776666554
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.00086 Score=57.35 Aligned_cols=63 Identities=10% Similarity=-0.051 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 108 DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|...+++..+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33456666555556777888888887777654 5677777777777788888888887777765
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00058 Score=49.46 Aligned_cols=79 Identities=10% Similarity=-0.045 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLMIINGVFP--DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
.|..+...+...|++++|+..|++.......| ...++..+...+...|+.++|...++...+. .+....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 34445555555566666666666655432221 1235555555666666666666666665541 1222334444444
Q ss_pred HHH
Q 036775 189 MYG 191 (293)
Q Consensus 189 ~~~ 191 (293)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=7e-05 Score=44.59 Aligned_cols=56 Identities=7% Similarity=0.039 Sum_probs=45.7
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+...|+++.|...++.+.+..|.++..+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577888888888888888888888888888888888888888888888888765
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.84 E-value=0.0011 Score=44.57 Aligned_cols=104 Identities=9% Similarity=0.008 Sum_probs=59.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC---chhHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTRYDLSV---SNLVGNAVINM 87 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 87 (293)
-.++-..|+.++|+.+|++....| .... ...+..+.+++...|++++|..+++.... ..|. +......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHHHHHH
Confidence 345556677777777777777765 3333 23455556667777777777777777665 2222 22233334445
Q ss_pred HHHcCCHHHHHHHHHHhhhCCcccHHHHHHHH
Q 036775 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGL 119 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 119 (293)
+...|+.++|++.+-...-++...|..-|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777666555444444444444333
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.83 E-value=0.00045 Score=56.93 Aligned_cols=96 Identities=18% Similarity=0.221 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
.....+++.+....+.+.+..++.+.+.. ....-..|..++++.|.+.|..+.+..+++.=.. +|+-||..+++.||
T Consensus 67 ~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 67 LDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhHHHHH
Confidence 34455556555566666666666666544 1212233445777777777777777777766654 67777777777777
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 036775 188 DMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~ 206 (293)
+.+.+.|++..|.++...|
T Consensus 146 d~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 7777777777777776666
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0019 Score=43.50 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHH
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYG 191 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 191 (293)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..++++....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566778889999999998888876644 34566777788888999999999988876321100 2222233445677
Q ss_pred hcCChHHHHHHHHhCCCCchHhHHHHHHHHHH
Q 036775 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACR 223 (293)
Q Consensus 192 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 223 (293)
..|+.++|+.++-..- .++...|..-|..|.
T Consensus 87 ~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL-AETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 8888888888876541 123334555554443
No 175
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00042 Score=53.22 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 197 (293)
+.+.+++++|+..|.+.++.... |.+-|..-..+|++.|.++.|++--+..+. +.|. ..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcHH
Confidence 45677888888888888776443 667777777788888888888877766664 2343 467888888888888888
Q ss_pred HHHHHHHhC-CCCchHhHHHHHHHH
Q 036775 198 EAEAFIREM-PIEAEWSVWGALLNA 221 (293)
Q Consensus 198 ~a~~~~~~~-~~~~~~~~~~~l~~~ 221 (293)
+|++.|++. .+.|+-.+|-.=+..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 888887776 677777666655555
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.78 E-value=0.00073 Score=55.22 Aligned_cols=103 Identities=10% Similarity=-0.053 Sum_probs=85.2
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCCh
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRND 228 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 228 (293)
...+...|++++|+..|+++.+ .-+.+...|..+..+|...|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3456678999999999999986 23446678888999999999999999999998 5555 455788888889999999
Q ss_pred hhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775 229 EMFDPIRQELVNKKGVSVGTFALMSNT 255 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~~~~~~~li~~ 255 (293)
+.|...+++..+..|.+......+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999988887776665444
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.78 E-value=0.00013 Score=44.03 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=55.7
Q ss_pred hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 036775 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD-RWEDANKIRDEIRR 274 (293)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 274 (293)
+...|..+...+...|+++.|...|++..+..|.++..|..+..++...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34567778888899999999999999999999989999999999999999 79999999988765
No 178
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.78 E-value=0.0073 Score=50.45 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHH
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQV 100 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 100 (293)
.+.....+++....-...|+ .+|...++...+..-++.|..+|.++.+ .+..+ ++.+.++++..|| .++..-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 44555666666554323343 4567777877888888999999999988 56555 6777788887776 4678889999
Q ss_pred HHHhhhC--Cccc-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcH--hHHHHHHHHHhcCCChhHHHHHHHHhhhhcC
Q 036775 101 FNMLAYK--DMIS-WSTVISGLAMNGCGRQALQLFSLMIINGVFPDD--VTFIALISACSHGGLVDQGLILFKAMSTVYE 175 (293)
Q Consensus 101 ~~~~~~~--~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 175 (293)
|+--.++ |... -..-+.-+...++-..|..+|++....++.|+. ..|..++..-+.-|++..+.++-+++.....
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9877654 4333 345667777888888999999998887666553 6899999888889999988888877765322
Q ss_pred --CCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 176 --IVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 176 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+....-..+++.|.-.+....-..-++.+
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 2233334455666776666665555555554
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.78 E-value=0.00015 Score=43.53 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=29.8
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchH
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEW 212 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~ 212 (293)
+.|++++|.++|+.+.. ..+-+...+..+..+|.+.|++++|..+++++ ...|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 45566666666666654 12234445555666666666666666666666 334443
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.72 E-value=0.012 Score=45.26 Aligned_cols=172 Identities=13% Similarity=0.104 Sum_probs=92.1
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH---HHHHHHHHHcCCHHHHHHHHHHhhhCCc----ccHHHHHH
Q 036775 45 LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG---NAVINMYVKCGDVGIAIQVFNMLAYKDM----ISWSTVIS 117 (293)
Q Consensus 45 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~ 117 (293)
+......+...|+++.|.+.|+.+.. ..|-+.... -.++.+|.+.+++++|...+++..+..+ ..|-..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 33344455667888888888888877 333333332 4567788888889999888888875311 12333333
Q ss_pred HHHh--c---------------CCH---HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCC
Q 036775 118 GLAM--N---------------GCG---RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIV 177 (293)
Q Consensus 118 ~~~~--~---------------~~~---~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 177 (293)
+.+. . .|. .+|+..|+++.+ -|-.+.-..+|...+..+...
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~---- 173 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR---- 173 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH----
Confidence 3221 1 112 233344444433 333334445555444444431
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHhC----C-CCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 178 PQTQHYACVVDMYGRAGLLEEAEAFIREM----P-IEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 178 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
. ...-..+.+.|.+.|.+.-|..=++.+ + ..........+..+|...|..+.|..+...+
T Consensus 174 l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 111124555666666666665555555 2 2223334555666677777777666665544
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.69 E-value=0.014 Score=44.99 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCcc---c---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYKDMI---S---WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
.....+.+.|++++|.+.|+++....+. . .-.++.++.+.+++++|...+++..+..+.-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 4455566789999999999998864222 1 234567788899999999999998876443333344444444331
Q ss_pred --C---------------CC---hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHH
Q 036775 157 --G---------------GL---VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG 216 (293)
Q Consensus 157 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 216 (293)
. .+ ..+|...|+.+++ -|-...-..+|...+..+...--.. -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-EL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence 1 11 1233344444443 2322233444444444331010000 11
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcCCc---hhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKGVS---VGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
.+..-|.+.|.+..|..-++.+.+..|.+ ......++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 23444888999999999999999887654 4456778899999999999999887654
No 182
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.0028 Score=44.61 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMII-----NGVFPDDVT 146 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 146 (293)
..++..+...|++++|..+.+.+... +...|..+|.++...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666667777777776666543 444666667777777777777666666532 366666544
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.003 Score=54.13 Aligned_cols=141 Identities=7% Similarity=-0.079 Sum_probs=88.0
Q ss_pred CCCCchhHHHHHHHHHHHc--C---CHHHHHHHHHHhhhCCc---ccHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 036775 73 DLSVSNLVGNAVINMYVKC--G---DVGIAIQVFNMLAYKDM---ISWSTVISGLAMN--------GCGRQALQLFSLMI 136 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~--------~~~~~a~~~~~~m~ 136 (293)
..+.+...|...+.+.... + +.++|..+|++..+.|+ ..|..+..++... .+...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4455555555555553332 1 25566777776665432 2333332222221 12234444444433
Q ss_pred hC-CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhH
Q 036775 137 IN-GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSV 214 (293)
Q Consensus 137 ~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~ 214 (293)
.. ....+...|..+.......|++++|...+++..+ . .|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 1233556777776666778999999999999986 3 367888999999999999999999999887 56666555
Q ss_pred HH
Q 036775 215 WG 216 (293)
Q Consensus 215 ~~ 216 (293)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0037 Score=50.38 Aligned_cols=257 Identities=9% Similarity=-0.053 Sum_probs=158.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcC
Q 036775 14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCG 92 (293)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 92 (293)
..+.+..++..|+..+....+.. +-+..-|..-...+...++++++.--.++-.+ +.| ....+...-.++...+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r---~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVR---LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhhee---cCCCccccccchhhhhhhhH
Confidence 35566677788888888877752 33344555555556666666666544433322 111 1123334444455555
Q ss_pred CHHHHHHHHHHhh---------------hCC---c--ccHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 93 DVGIAIQVFNMLA---------------YKD---M--ISWSTV-ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 93 ~~~~A~~~~~~~~---------------~~~---~--~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
+..+|.+.++.-. ..+ + .+|..+ ..++...|+.++|.++--..++.... ..+...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~---n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT---NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc---hhHHHHh
Confidence 5555554443221 001 1 122222 24566778888888877776654322 2333344
Q ss_pred HH--HhcCCChhHHHHHHHHhhhhcCCCcchhH-------------HHHHHHHHHhcCChHHHHHHHHhC-CCCc-----
Q 036775 152 SA--CSHGGLVDQGLILFKAMSTVYEIVPQTQH-------------YACVVDMYGRAGLLEEAEAFIREM-PIEA----- 210 (293)
Q Consensus 152 ~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~~~~-~~~~----- 210 (293)
++ +--.++.+.+...|++..+ ..|+... +..-.+-..+.|++.+|.+.+.+. ++.|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 43 3356778888888888775 2354322 222233456789999999999887 4444
Q ss_pred hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCC
Q 036775 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKT 281 (293)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 281 (293)
+...|.....+..+.|+.++|..-.++..+.++.-...|..-..++...++|++|.+-|+...+..-.+..
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 45556666666889999999999999998888777777888888888899999999999877654333333
No 185
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.65 E-value=0.00081 Score=45.72 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------ccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEK--------------TKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~--------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
|..++.++|.++++.|+.+....+++..-. ..+..|+..+..+++.+++..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999998876522 112457777777777777777777777777777777
Q ss_pred hcCCCCchhHHHHHHHHHHHc
Q 036775 71 RYDLSVSNLVGNAVINMYVKC 91 (293)
Q Consensus 71 ~~~~~~~~~~~~~l~~~~~~~ 91 (293)
..+++.+..+|..|++-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 677777777777776654443
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.04 Score=48.99 Aligned_cols=217 Identities=11% Similarity=0.032 Sum_probs=135.8
Q ss_pred ccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHH
Q 036775 54 SISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQ 130 (293)
Q Consensus 54 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~ 130 (293)
..+++..|.+-...+.+.++..+-..++.+|. ..+.|..++|..+++....+ |..|...+-.+|-..++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678888888888776343333333333333 56789999999888877643 77788889999999999999999
Q ss_pred HHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-C---------hHHHH
Q 036775 131 LFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-L---------LEEAE 200 (293)
Q Consensus 131 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~ 200 (293)
+|++..+. .|+..-...+..+|.+.+++.+-.++--++.+ ..+-+...+=++++.+...- . ..-|.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99998764 56788888888889988887765555444443 23333433333444443321 1 12344
Q ss_pred HHHHhCCCCc----hHhHHHHHHHHHHhcCChhhchHHHHH-HHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 201 AFIREMPIEA----EWSVWGALLNACRIHRNDEMFDPIRQE-LVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 201 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+.++.+-..+ +..-...-.......|.+++|..++.. ..+.. +.+...-+.-+..+...++|.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444441111 111122223345677889999988843 33332 44444555666677777777777777776666
Q ss_pred cC
Q 036775 275 MG 276 (293)
Q Consensus 275 ~~ 276 (293)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 54
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.011 Score=42.46 Aligned_cols=132 Identities=13% Similarity=0.052 Sum_probs=89.6
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHhH
Q 036775 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDVT 146 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~ 146 (293)
....|+....-.|..+....|+..+|...|++...- |......+.++....+++..|...++.+-+.... -+..+
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 455677777777888888888888888888877642 6666677777777788888888888887665311 12234
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
...+.+.+...|...+|+..|+.... + -|+...-......+.+.|+.+++..-+.++
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~-~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS-Y--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH-h--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 55566777788888888888888875 2 355544444455677777776665544333
No 188
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.63 E-value=0.00091 Score=49.19 Aligned_cols=87 Identities=9% Similarity=0.151 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC----------------cchHHH
Q 036775 4 RDVVSWTTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----------------ALSFGQ 62 (293)
Q Consensus 4 p~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 62 (293)
.|-.+|..+++.|.+. |.++=....+..|.+-| +.-|..+|+.||..+=+.. +.+-|.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666543 45555555666666666 6666666666666654321 334456
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
+++++|.. .|+-||..++..|++.+++.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 66666666 566666666666666665444
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0027 Score=49.05 Aligned_cols=100 Identities=8% Similarity=0.036 Sum_probs=73.1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc-hHhHHHHHHHHH-H--hcCChhhchHHHHHHHhhcCCchhhHHH
Q 036775 177 VPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA-EWSVWGALLNAC-R--IHRNDEMFDPIRQELVNKKGVSVGTFAL 251 (293)
Q Consensus 177 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~-~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 251 (293)
+-|...|-.|...|...|+++.|..-|.+. .+.| +...+..+..++ . ......++..+++++.+.+|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888888888888888888888777 3332 344455555552 2 2234567778888888888888888888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 252 MSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 252 li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888888888888888888887754
No 190
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.57 E-value=0.0014 Score=44.52 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=47.7
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMI---------------INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY 174 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 174 (293)
.++.+++.++++.|+.+....+++..- .....|+..+..+++.+|+..+++..|.++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 345555556666666655555554432 12244666666666666666666666666666666656
Q ss_pred CCCcchhHHHHHHHHH
Q 036775 175 EIVPQTQHYACVVDMY 190 (293)
Q Consensus 175 ~~~~~~~~~~~l~~~~ 190 (293)
+++.+..+|..|+.-.
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6666666666666543
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.56 E-value=0.00013 Score=43.90 Aligned_cols=52 Identities=4% Similarity=0.137 Sum_probs=38.3
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...|+++.|..+++.+....|.+...+..+..+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567777777777777777777777777777777777777777777777655
No 192
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.56 E-value=0.028 Score=45.08 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 182 HYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 182 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
+.+..+.-+...|+...|.++-.+.++ |+...|...+.+++..+++++...+.+. ..+|.-|...+.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCC
Confidence 445556666777888888888888874 7777788888888888888777765432 2345678888888888888
Q ss_pred HHHHHHHHHH
Q 036775 262 WEDANKIRDE 271 (293)
Q Consensus 262 ~~~a~~~~~~ 271 (293)
..+|..+...
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 8888877765
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.52 E-value=0.00053 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=27.7
Q ss_pred HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+.+.|++++|...|+++.+ ..+-+...+..+..++...|++++|..+|++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555666666555554 22234445555555555555555555555554
No 194
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.52 E-value=0.035 Score=45.13 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 246 VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
-+.+.+++.+..-.|++++|.+..++|.+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34445555555555555555555555544
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.48 E-value=0.013 Score=43.92 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=33.7
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCCchh---hHHHHHHHHhcCCCHHHHH
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGVSVG---TFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~ 266 (293)
+..-|.+.|.+..|..-++.+.+..|.+.. ....++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 344478888888888888888887766544 4566777888888877443
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=97.46 E-value=0.0019 Score=45.55 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=39.9
Q ss_pred HHhcCChHHHHHHHHhC-C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHH
Q 036775 190 YGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 267 (293)
+...|++++|..+|.-+ - ..-+..-|..|..++...++++.|...|.......+.|+..+-....++...|+.+.|.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 33455555555555544 1 111222344444444555555555555554444444444444445555555555555555
Q ss_pred HHHHHH
Q 036775 268 IRDEIR 273 (293)
Q Consensus 268 ~~~~m~ 273 (293)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 554443
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.44 E-value=0.014 Score=39.44 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Q 036775 213 SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLK 278 (293)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 278 (293)
...+.-+......|.-+.-.++++.+.+...+++.....+..+|.+.|+..++.+++++..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345566777888999999999999988777888999999999999999999999999999998874
No 198
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.43 E-value=0.00072 Score=47.68 Aligned_cols=70 Identities=14% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCCCcc
Q 036775 214 VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR-----RMGLKKKTGC 283 (293)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 283 (293)
....++..+...|+++.+..+++.+....|.+...|..++.+|...|+..+|.++|+++. +.|+.|.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566667889999999999999999999999999999999999999999999998764 3588887654
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.0017 Score=39.00 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC-cchHHHHHHHHHHh
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS-ALSFGQYVHSYIST 70 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 70 (293)
+..+|..+-..+...|++++|+..|++..+.. +-+...|..+..++...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777776642 334556666666666666 56777766666554
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.37 E-value=0.053 Score=43.82 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=123.3
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHH--HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHH
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVG 95 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (293)
-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+.|.+.-+..-. .-+--.-.+.+++...|..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChH
Confidence 346666666666666542 22221 22222233455666666655555433 12222334566677777777777
Q ss_pred HHHHHHHHhhhC-----Cccc--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCChhHHH
Q 036775 96 IAIQVFNMLAYK-----DMIS--WSTVISGLA---MNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGLVDQGL 164 (293)
Q Consensus 96 ~A~~~~~~~~~~-----~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~ 164 (293)
.|+++.+.-... ++.- --.|+-+-. -..+...|...-.+..+ +.||.. .-..-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 777777655422 2110 111111110 11233333333333222 334432 2233445677888888888
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHH
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 239 (293)
.+++.+=+ . .|.+.++ .+..+.+.|+. +.+=+++. ..+| +..+-..+..+....|++..|..--+...
T Consensus 284 ~ilE~aWK-~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWK-A--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHh-c--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 88888764 3 3444333 22334455543 22222222 2334 34455566666777888877766555544
Q ss_pred hhcCCchhhHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 036775 240 NKKGVSVGTFALMSNTFAG-ADRWEDANKIRDEIRR 274 (293)
Q Consensus 240 ~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~ 274 (293)
.. .|....|..|...-.- .|+-+++...+-+-.+
T Consensus 357 r~-~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 357 RE-APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hh-CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 43 3355667777776544 4888888887766544
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.36 E-value=0.0039 Score=48.44 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
+.-+...|...|++++|...|+.+.+. ....+-.+..++...|+.++|..+|+++.+.
T Consensus 183 ~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 183 NYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555431 1122333344455555666666666555543
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.34 E-value=0.00094 Score=40.66 Aligned_cols=56 Identities=7% Similarity=-0.017 Sum_probs=44.1
Q ss_pred HHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 220 NACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
..|.+.++++.|..+++.+....|.++..+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45677788888888888888888878888888888888888888888888877763
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.32 E-value=0.004 Score=50.28 Aligned_cols=260 Identities=12% Similarity=-0.030 Sum_probs=162.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHccC--CCchHHHHHHHHHHhcccCcchHHHHHHHHHHh---hcCCC-CchhHHHHHHHHH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKE--AEPNEATLVNVLSACSSISALSFGQYVHSYIST---RYDLS-VSNLVGNAVINMY 88 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~l~~~~ 88 (293)
-+++.|+...-+.+|+...+-|. ...=+.+|+-+.++|.-.+++++|.+....=.. ..|-+ -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 57889999999999999988761 112234566777778888888888876543211 01111 1222334455556
Q ss_pred HHcCCHHHHHHHHHHhh----hC-----CcccHHHHHHHHHhcCC--------------------HHHHHHHHHHHH---
Q 036775 89 VKCGDVGIAIQVFNMLA----YK-----DMISWSTVISGLAMNGC--------------------GRQALQLFSLMI--- 136 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~----~~-----~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~--- 136 (293)
--.|.+++|+-+-.+-. +- ....+..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777765433221 11 22345556666655442 233444443311
Q ss_pred -hCCCC-CcHhHHHHHHHHHhcCCChhHHHHHHHHhhh---hcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC----
Q 036775 137 -INGVF-PDDVTFIALISACSHGGLVDQGLILFKAMST---VYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM---- 206 (293)
Q Consensus 137 -~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~---- 206 (293)
+.|-. .--..|..|-..|.-.|+++.|+...+.-.+ .+|-+. ....+..+..++.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 0123455555566667889998876654322 244333 3457888999999999999999988865
Q ss_pred ---C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 207 ---P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 207 ---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+ ......+..+|...|.-..++++|..++.+-... .......+-+|..+|...|..++|+.+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2 2335557778888888888899998888654431 133456788899999999999999988776554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.0065 Score=47.24 Aligned_cols=97 Identities=10% Similarity=0.106 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc----hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch----HhHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ----TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE----WSVWG 216 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~----~~~~~ 216 (293)
.|...+....+.|++++|...|+.+.+.+ |+ ...+..+...|...|++++|...|+.+ ...|+ ...+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34444444455677777777777776522 32 235566667777777777777777666 21222 22334
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
.+...+...|+.+.|..+++.+.+..|.+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 44445566667777777776666666544
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.29 E-value=0.096 Score=45.20 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=105.9
Q ss_pred HHHHHHHHHHcCC--HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 9 WTTMIGGYAERGF--CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 9 y~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
++..=.+|.+.++ +-+.+.-++++++.| -.|+... +...|+-.|.+.+|.++|.+- |.. +..+.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P~~iL---lA~~~Ay~gKF~EAAklFk~~----G~e------nRAlE 666 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRG-ETPNDLL---LADVFAYQGKFHEAAKLFKRS----GHE------NRALE 666 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCchHHH---HHHHHHhhhhHHHHHHHHHHc----Cch------hhHHH
Confidence 4445556666554 334444556677776 6677543 344577788888888888763 332 34456
Q ss_pred HHHHcCCHHHHHHHHHHhh---------hC-----CcccHHHHHHHHHhcCCHHHHHHHHHH------HHhCCCC---Cc
Q 036775 87 MYVKCGDVGIAIQVFNMLA---------YK-----DMISWSTVISGLAMNGCGRQALQLFSL------MIINGVF---PD 143 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~---------~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~~---p~ 143 (293)
.|.....++.|.+++.... ++ ++.-=.+....+...|+.++|..+.-+ +.+-+-+ .+
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 6666666666666553321 11 222223445556667777777665421 1111111 23
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh
Q 036775 144 DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS 213 (293)
Q Consensus 144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~ 213 (293)
..+...+...+.+...+..|-++|..|-. ...+++.....++|++|..+-++. +..||+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 34555555555666777778888877753 234677788889999999998888 4445543
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.047 Score=41.65 Aligned_cols=134 Identities=8% Similarity=-0.135 Sum_probs=97.4
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH-----
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA----- 184 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----- 184 (293)
..-+.++..+.-.|.+.--+.++++..+...+-++.....+.+.-.+.|+.+.|..+|+...+.. -+.|..+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHh
Confidence 34566777777888888889999999888777788888889999999999999999999776532 233333333
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 185 CVVDMYGRAGLLEEAEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
.....|.-.+++.+|...+.++. ...|....|.-.-+..-.|+...|.+..+.+.+..|.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33344666788889999998883 2234444454444556678899999999888887754
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.015 Score=44.23 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHH
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVF 101 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 101 (293)
.+..+++|++-.. ...++++..+...+.+.-....+....+ ...+.++.....|+..-.+.||.+.|...|
T Consensus 165 ~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 165 EESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred hhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3666777765433 3556777777888888888888888888 555667777788888888889999999988
Q ss_pred HHhhhC----CcccHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 102 NMLAYK----DMISWSTVI-----SGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 102 ~~~~~~----~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
++..+. |..+++.++ ..+.-.+++..|...|.+....... |....|.-.-+..-.|+..+|.+.++.+.+
T Consensus 236 ~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred HHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 877643 444444433 3445567888888888887766543 556666666666677888888888888875
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.24 E-value=0.079 Score=43.17 Aligned_cols=161 Identities=16% Similarity=0.066 Sum_probs=107.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC-------CcccHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK-------DMISWSTVISGLAM---NGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
..++-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+......+++.||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 45666788999999999999999865 22223345556777 899999999999977666777888988888
Q ss_pred HHHhc---------CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC-hH---HHHHHH---HhC-------CC
Q 036775 152 SACSH---------GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL-LE---EAEAFI---REM-------PI 208 (293)
Q Consensus 152 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~---~~~-------~~ 208 (293)
..|-. ...+++|...|.+.-+ +.|+...--.+...+...|. ++ +..++- ... .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 77642 2346778877776543 34554322223333333343 22 222222 111 12
Q ss_pred CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 209 EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 209 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
..+.--+.+++.++.-.|+.++|.+..+++.+..||.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2344467788899999999999999999999887654
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.24 E-value=0.077 Score=42.92 Aligned_cols=251 Identities=11% Similarity=-0.009 Sum_probs=152.9
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHccCCCchHHHHHHHHHH--hcccCcchHHHHHHHHHHhhcCCCCchhH--HH
Q 036775 9 WTTMIGGYAE--RGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSA--CSSISALSFGQYVHSYISTRYDLSVSNLV--GN 82 (293)
Q Consensus 9 y~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 82 (293)
|.+|-.++.. .|+-..|.++-.+..+. +..|......++.+ ..-.|+++.|.+-|+.|.. .|.... ..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLR 158 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLR 158 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHH
Confidence 4444444443 36666776666554432 44444444455544 4456888888888888865 222221 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHh--HHHHHHHHHh-
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDV--TFIALISACS- 155 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~- 155 (293)
.|.-.-.+.|+.+.|..+-++.-+. -.-.+...+...+..|+|+.|+++++.-+... +.+++. .-..|+.+-.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333344567888888777776653 23467888999999999999999999876543 344442 2223333221
Q ss_pred --cCCChhHHHHHHHHhhhhcCCCcchhH-HHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhhc
Q 036775 156 --HGGLVDQGLILFKAMSTVYEIVPQTQH-YACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 156 --~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 231 (293)
-..+...|...-.+.. .+.|+..- -..-..+|.+.|+..++-.+++.+ +..|++..+. .|.....-+.+
T Consensus 239 s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcH
Confidence 1123444554444333 44566432 223456899999999999999999 6677776443 34444444555
Q ss_pred hHHHHHHHh---hcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 232 DPIRQELVN---KKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 232 ~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
..-+++..+ ..+.+...-..+..+....|++..|..--+..
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 555554444 34666777778888888899988777655543
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.03 Score=43.50 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=45.7
Q ss_pred cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc---CChHHHHHHHHhC-CCCchHh-HHHH
Q 036775 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA---GLLEEAEAFIREM-PIEAEWS-VWGA 217 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~-~~~~~~~-~~~~ 217 (293)
|...|..|-.+|...|+.+.|...|....+..| ++...+..+..++... ..-.++..+|+++ ...|+.. ....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445555555555555555555555555554222 2333333333333221 1233455555555 3333322 2333
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
|...+...|++.+|...+++|.+..|+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 333355555555555555555555443
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.05 Score=39.29 Aligned_cols=100 Identities=5% Similarity=-0.073 Sum_probs=49.9
Q ss_pred CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCc---hHhHHHH
Q 036775 142 PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEA---EWSVWGA 217 (293)
Q Consensus 142 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~ 217 (293)
|+...-..+..+..+.|+..+|...|++... .-+..|......+.++....+++..|...++++ ...| ++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4444445555555555555555555555553 223334445555555555555555555555555 1111 1122233
Q ss_pred HHHHHHhcCChhhchHHHHHHHhhc
Q 036775 218 LLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 218 l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
+.+.+...|.+..|+.-|+......
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC
Confidence 4444555555555555555554433
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.13 E-value=0.065 Score=40.12 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC-CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA-EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
+....=.....+...|++.+|++.|+.+....+. +--......+..++-+.|+++.|...++.+.+...-.|.. .+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~ 82 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYAL 82 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHH
Confidence 3334344455677888999999999998875311 2223455567777888888888888888887733322222 1222
Q ss_pred HHHHHHHcCC-------------HHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH
Q 036775 84 VINMYVKCGD-------------VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150 (293)
Q Consensus 84 l~~~~~~~~~-------------~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 150 (293)
.+.+.+.... ..+|.. .+..++.-|=.+.-..+|...+..+.+. =...-..+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~-----------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~i 147 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIE-----------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHH-----------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHH-----------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 2222221111 112222 2333444444444455555544444321 01111224
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhcCChHHH
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 199 (293)
..-|.+.|.+..|..-++.+.+...-.+. ......++.+|.+.|..+.+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 45567777777777777777763221111 13445666677777766643
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.09 E-value=0.0022 Score=39.63 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=9.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNM 103 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~ 103 (293)
++.+...|...|++++|+..|++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444443
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.07 E-value=0.087 Score=44.93 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcH-----hHHHHHHHHHhc----CCChhHHHHHHHHhhhhcCCCcchhHH
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIING-VFPDD-----VTFIALISACSH----GGLVDQGLILFKAMSTVYEIVPQTQHY 183 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 183 (293)
.+++..+-.||-+.+++.+.+..+.+ +.-.. -+|..++..++. ....+.|.++++.+.+. -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 44555566899999999998876543 32111 234444444443 45678899999999863 3666555
Q ss_pred HH-HHHHHHhcCChHHHHHHHHhCC-CC-----chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHH-
Q 036775 184 AC-VVDMYGRAGLLEEAEAFIREMP-IE-----AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNT- 255 (293)
Q Consensus 184 ~~-l~~~~~~~g~~~~a~~~~~~~~-~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~- 255 (293)
.. -.+.+...|++++|++.|++.- .. .....+--+.-.+...+++++|...+..+.+....+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 43 4566778999999999999762 11 1223344456668889999999999999999888888888776555
Q ss_pred HhcCCCH-------HHHHHHHHHHHH
Q 036775 256 FAGADRW-------EDANKIRDEIRR 274 (293)
Q Consensus 256 ~~~~g~~-------~~a~~~~~~m~~ 274 (293)
+...|+. ++|.++|.+...
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 4457877 899999987654
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0046 Score=38.17 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----cCCCch-HHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKT----KEAEPN-EATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
..+|+.+-..|...|++++|+..|++..+. |...|+ ..++..+..++...|++++|.+.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788888888889999998888887542 111122 33555555666666666666666665543
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.2 Score=44.02 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=147.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCC---CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhc---------
Q 036775 5 DVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEA---EPNEATLVNVLSACSSISALSFGQYVHSYISTRY--------- 72 (293)
Q Consensus 5 ~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------- 72 (293)
...+|..+...--..|+++.|..+++.=...+.. -.+..-+...+.-+.+.|+.+....++-++....
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888889999998888754433311 1223345566777888888888888777776611
Q ss_pred -CCCCchhHHHHHHH--------HHHHcCCHHHHHHHHHHhh-------hCCcccHHHHHHHHHhcCCHH----------
Q 036775 73 -DLSVSNLVGNAVIN--------MYVKCGDVGIAIQVFNMLA-------YKDMISWSTVISGLAMNGCGR---------- 126 (293)
Q Consensus 73 -~~~~~~~~~~~l~~--------~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~---------- 126 (293)
..|.....|.-++. .+.+.++..++...|..-. +.-...-....+.+.+.....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 11112222211111 1112222222222221100 011111223334444433311
Q ss_pred HHHHHHHHHH-hCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775 127 QALQLFSLMI-INGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205 (293)
Q Consensus 127 ~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 205 (293)
+-+.+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..++|++-+++-+.
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1122222222 22434444556666666778899999988877765 27888888888899999999998888877
Q ss_pred CCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775 206 MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (293)
.+. +.-|.-++.+|.+.|+.++|.+++-+... +.-...+|.+.|++.+|.++--
T Consensus 741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cCC---CCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 741 34467788899999999999988755422 1156788888888888877643
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.99 E-value=0.0058 Score=37.08 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
+.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444443222 33334444444444444444444444444
No 218
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.96 E-value=0.086 Score=45.91 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred cHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 143 DDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 143 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
+....-.+..++.+.|.-++|.+.|-+... |. +-+..|...++|.+|.++-++..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL-----PK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC-----cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444555566666666666655433221 22 13345555666666666666653
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.92 E-value=0.14 Score=44.30 Aligned_cols=175 Identities=13% Similarity=0.053 Sum_probs=100.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHH-----HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLV-----NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
...++-.|.+.+|-++|.+--..+ --...|. ....-+...|..++-..+.+.-.+ .. .+..--.+....
T Consensus 639 A~~~Ay~gKF~EAAklFk~~G~en---RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~-WA--r~~kePkaAAEm 712 (1081)
T KOG1538|consen 639 ADVFAYQGKFHEAAKLFKRSGHEN---RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD-WA--RNIKEPKAAAEM 712 (1081)
T ss_pred HHHHHhhhhHHHHHHHHHHcCchh---hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-Hh--hhcCCcHHHHHH
Confidence 345667788888888776532211 0011111 122224444544444444433322 11 111111345666
Q ss_pred HHHcCCHHHHHHHHH-------------HhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 88 YVKCGDVGIAIQVFN-------------MLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~-------------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
+...|+.++|..+.- ++...+..+...+...+.+...+.-|-++|..|-+. .+++...
T Consensus 713 LiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlH 783 (1081)
T KOG1538|consen 713 LISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLH 783 (1081)
T ss_pred hhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhhe
Confidence 777788777765542 222235556666666777788888899999887432 3467778
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
...+++++|..+-+..-+ +.||+ |......++...++++|.+.|.+.+
T Consensus 784 ve~~~W~eAFalAe~hPe---~~~dV--y~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPE---FKDDV--YMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred eecccchHhHhhhhhCcc---ccccc--cchHHHHhhhhhhHHHHHHHHHHhc
Confidence 899999999998887654 34554 4445555666666666666665553
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.88 E-value=0.2 Score=41.49 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHH
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVV 187 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~ 187 (293)
.+|...++.-.+..-.+.|..+|-+..+.| +.+++..+++++..++ .|+..-|..+|+.-... .||...| +..+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHH
Confidence 356667777777777778888888887777 5667777777776554 46667777777755431 2444333 3455
Q ss_pred HHHHhcCChHHHHHHHHhC--CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 188 DMYGRAGLLEEAEAFIREM--PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~--~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
..+.+.++-+.|..+|+.. .+..+ ...|..+|.--+.-|+...+..+-+++....
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 6667777777787777754 22222 3456667766666777766666655555544
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.86 E-value=0.14 Score=43.70 Aligned_cols=178 Identities=12% Similarity=0.054 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-----hHHHHHHHHHHH----cC
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-----LVGNAVINMYVK----CG 92 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~ 92 (293)
+.-..-+|+-+..- +||. +..+++..+-.|+-+.+.+.+....+..++.... ..|...+..++. ..
T Consensus 173 v~~G~G~f~L~lSl--LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL--LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred HHHHHHHHHHHHHh--CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 33444455555553 4443 3345555666677777777776665522332221 123333333333 33
Q ss_pred CHHHHHHHHHHhhh--CCcccHHHHH-HHHHhcCCHHHHHHHHHHHHhCC---CCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 93 DVGIAIQVFNMLAY--KDMISWSTVI-SGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 93 ~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
+.+.|.++++.+.+ |+...|...- +.+...|++++|++.|++..... .+.....+--+.-.+.-..++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 56777777777766 4544443322 44555677777777777654211 112233444555566667777777777
Q ss_pred HHHhhhhcCCCcchhHHHHH-HHHHHhcCCh-------HHHHHHHHhC
Q 036775 167 FKAMSTVYEIVPQTQHYACV-VDMYGRAGLL-------EEAEAFIREM 206 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~ 206 (293)
|..+.+... .+..+|.-+ ..++...|+. ++|..+|++.
T Consensus 328 f~~L~~~s~--WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 328 FLRLLKESK--WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhccc--cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 777775322 223333322 2244455666 7777777666
No 222
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.83 E-value=0.099 Score=43.14 Aligned_cols=127 Identities=14% Similarity=0.079 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh--CCcccH-HHHHHH
Q 036775 43 ATLVNVLSACSSISALSFGQYVHSYISTRYD-LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY--KDMISW-STVISG 118 (293)
Q Consensus 43 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~li~~ 118 (293)
..|...+++-.+..-++.|..+|-...+ .+ +.+++.++++.+..++ .|+...|.++|+--.. +|...| +..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444455555555555555555555555 33 4445555555554443 2444555555554332 232222 223333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc--HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPD--DVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+.+.++-+.|..+|+..... +..+ ...|..+|..-..-|++..+..+-+.+.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 44455555555555533221 1111 23455555555555555555555555443
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.82 E-value=0.092 Score=44.23 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=97.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCC
Q 036775 14 GGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGD 93 (293)
Q Consensus 14 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (293)
+...-.++++++.+....-.-...++ ......+++-+-+.|..+.|+++-..-.. -.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCC
Confidence 34455677777766664211111022 33456677777777777777766444322 2445567788
Q ss_pred HHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 036775 94 VGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTV 173 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 173 (293)
++.|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..++-.|.-.|+.+.-.++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~- 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE- 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-
Confidence 888877765554 555888888888888888888888887542 45566667777887777777766654
Q ss_pred cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchH
Q 036775 174 YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212 (293)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 212 (293)
.| -++....++.-.|+.++..+++.+.+..|-.
T Consensus 402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A 434 (443)
T PF04053_consen 402 RG------DINIAFQAALLLGDVEECVDLLIETGRLPEA 434 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred cc------CHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence 22 1455556666678888888888877644443
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.71 E-value=0.11 Score=43.23 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=56.6
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchH----HHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNE----ATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
.+...|+.+-.+|.+.|++++|+..|++... +.|+. .+|..+..+|...|+.++|.+.++...+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999888 55664 3589999999999999999999999887
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.66 E-value=0.3 Score=40.47 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=150.4
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHH------HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEA------TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV 89 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (293)
+-+.+++.+|.++|.+.-+.. ..++. .-+-+++++. .++.+.....+....+..|..+-...+..| .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L--~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKAL--VAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHH--HHH
Confidence 346789999999999987752 33322 2334555554 456666666666666634433333333332 355
Q ss_pred HcCCHHHHHHHHHHhhhC------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHhHH
Q 036775 90 KCGDVGIAIQVFNMLAYK------------------DMISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPDDVTF 147 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~ 147 (293)
+.+++++|.+.+..-.+. |...=+..+.++...|++.++..+++++... ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899998877655432 1112345677888999999999999998754 334688888
Q ss_pred HHHHHHHhcC--------CC-------hhHHHHHHHHhhhh-----cCCCcchhHHHHHHHHHHhc-----CChHHHHHH
Q 036775 148 IALISACSHG--------GL-------VDQGLILFKAMSTV-----YEIVPQTQHYACVVDMYGRA-----GLLEEAEAF 202 (293)
Q Consensus 148 ~~ll~~~~~~--------~~-------~~~a~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~ 202 (293)
+.++-.++++ .. ++.+.-+.+++... ..+-|.......++....-. --+-.+...
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 8866655543 11 22233333333321 02234444444444443321 112344445
Q ss_pred HHhCCCCchHh-HHHHHHHHHHhcCChhhchHHHHHHHhhc-----CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 203 IREMPIEAEWS-VWGALLNACRIHRNDEMFDPIRQELVNKK-----GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 203 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
|+.--+.|+.. ....+...+.+ +.+.+..+.+.+.... ..-..+|..++....+.++...|.+.+.-+.-
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~-- 326 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI-- 326 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--
Confidence 55445566644 34444444544 5666666665554432 22356799999999999999999999987765
Q ss_pred CCCCC
Q 036775 277 LKKKT 281 (293)
Q Consensus 277 ~~p~~ 281 (293)
+.|+.
T Consensus 327 ldp~~ 331 (549)
T PF07079_consen 327 LDPRI 331 (549)
T ss_pred cCCcc
Confidence 44443
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.65 E-value=0.02 Score=44.01 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=65.4
Q ss_pred HHHHHhh--hCCcccHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC-------------
Q 036775 99 QVFNMLA--YKDMISWSTVISGLAMN-----GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG------------- 158 (293)
Q Consensus 99 ~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------- 158 (293)
..|.... ++|..+|...+..+... +.++-....++.|++.|+.-|..+|+.|+..+-+..
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3444444 34556666666665432 455666667777888888888888888888765543
Q ss_pred ---ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 159 ---LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 159 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
+-+=++.++++|.. +|+.||.++-..|++++.+.+.
T Consensus 135 YP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred CchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence 23346788888885 7888888888888888877664
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=96.64 E-value=0.047 Score=38.66 Aligned_cols=90 Identities=8% Similarity=-0.105 Sum_probs=70.6
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh---hCCcccHHHHHHHHHhcC
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA---YKDMISWSTVISGLAMNG 123 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~ 123 (293)
.....+-..|++++|..+|+.+.. --+-+..-+..|..++-..+++++|...|...- ..|+..+-....++...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 333445678999999999999877 233445556888888888999999999997654 347777778888999999
Q ss_pred CHHHHHHHHHHHHhC
Q 036775 124 CGRQALQLFSLMIIN 138 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~ 138 (293)
+.+.|...|......
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999988763
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.60 E-value=0.045 Score=45.33 Aligned_cols=66 Identities=8% Similarity=-0.177 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
+.+...++.+..++.+.|++++|...+++..+ +.|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34466788888899999999999999999876 34543 35889999999999999999999888764
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.59 E-value=0.14 Score=35.70 Aligned_cols=127 Identities=11% Similarity=-0.014 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG 191 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 191 (293)
...++..+...+.+.....+++.+...+. .+...++.++..|++.+ ..+....++. . .+.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 34555666666666667777766666553 45566666666666542 2233333331 1 12222334666666
Q ss_pred hcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhc-CChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIH-RNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 192 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
+.+.++++..++.+++.. ...+..+... ++.+.|.+++++ ..++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 677777777777776532 2222333333 566666666554 1244566666655543
No 230
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.50 E-value=0.0031 Score=31.80 Aligned_cols=33 Identities=9% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHH
Q 036775 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANK 267 (293)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 267 (293)
+++..+..|.++..|..+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 567788889999999999999999999999863
No 231
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.059 Score=47.05 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=83.1
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
.+..-...+.+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..++|++-+++-..++ ++.-|.-++
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 34334444445556667777888888888888888888888888888888888887777665543 245667778
Q ss_pred HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 152 SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+|.+.|+.++|.+++-.... . .-...+|.+.|++.+|.++--+-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHHHHh
Confidence 888888888888887766542 1 14666777788877777665443
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.13 Score=39.58 Aligned_cols=98 Identities=11% Similarity=0.031 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccC-CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch-hHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKE-AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN-LVGNAVI 85 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 85 (293)
.|+.-+. +.+.|++..|...|....+..+ ..-....+..|..++...|+++.|..+|..+.+...-.|.. ....-|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555555 3345556666666666655420 01112233345555555555555555555555532222221 3333444
Q ss_pred HHHHHcCCHHHHHHHHHHhhh
Q 036775 86 NMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~ 106 (293)
.+..+.|+.++|...|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 444455555555555555443
No 233
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.29 E-value=0.011 Score=31.85 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775 215 WGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM 252 (293)
Q Consensus 215 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 252 (293)
+..+...|...|+++.|.+.+++..+..|.++..+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 44455555566666666666666666555555555444
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.12 Score=42.07 Aligned_cols=118 Identities=11% Similarity=0.018 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhC------------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH
Q 036775 85 INMYVKCGDVGIAIQVFNMLAYK------------------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT 146 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~~~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 146 (293)
.+.|.+.|++..|..-|++...- -..+++.+..++.+.+++..|++..+..+..+. +|+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhH
Confidence 45677888888888887775421 223566666677777777777777777666543 35555
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChH-HHHHHHHhC
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLE-EAEAFIREM 206 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~-~a~~~~~~~ 206 (293)
.-.--.++...|+++.|...|+.+++ +.|+- .+-+.|+.+--+..... +..++|..|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777764 23433 33333444433333332 335555555
No 235
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.24 E-value=0.078 Score=40.97 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=77.7
Q ss_pred CcchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC----------------cchHH
Q 036775 3 KRDVVSWTTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS----------------ALSFG 61 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a 61 (293)
++|-.+|-+.+..+... +.++=....++.|..-| +.-|..+|..||..+-+.. +-+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~ 142 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCA 142 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHH
Confidence 46788888888877654 55666677788898888 9999999999999876543 34557
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH-HHHHHHHHHhh
Q 036775 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV-GIAIQVFNMLA 105 (293)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 105 (293)
.+++++|.. .|+.||..+-..|++++.+.+-. .+..++.--|.
T Consensus 143 I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 143 IKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 889999998 89999999999999999887753 33444444443
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.064 Score=41.20 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc---hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCch-HhHHHHH
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQ---TQHYACVVDMYGRAGLLEEAEAFIREM----PIEAE-WSVWGAL 218 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~-~~~~~~l 218 (293)
|+.-+. +.+.|++..|.+.|...++ +.+-+ ...+..|..++...|++++|..+|..+ +..|. +..+.-|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444443 2344445556555555554 22221 123444555555555555555555554 11111 1233334
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCCc
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGVS 245 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (293)
..+....|+.+.|..+++++.+..|.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 444455555555555555555544443
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.10 E-value=0.2 Score=36.52 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhCC------cccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYKD------MISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.+..+...|++.|+.+.|.+.|.++.+.. +..+-.+|+.....+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566677777777777777777766542 23455566666666677666666665543
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.01 E-value=0.31 Score=33.92 Aligned_cols=84 Identities=12% Similarity=0.013 Sum_probs=39.1
Q ss_pred HHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHH
Q 036775 47 NVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGR 126 (293)
Q Consensus 47 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 126 (293)
.++..+...+.......+++.+.. .+ +.+...++.++..|++.+ ..+..+.++. ..+......+++.|.+.+.++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~-~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALK-LN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHc-cC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344444445555555555555555 22 244445555666655442 2222233321 223333334555555555555
Q ss_pred HHHHHHHHH
Q 036775 127 QALQLFSLM 135 (293)
Q Consensus 127 ~a~~~~~~m 135 (293)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
No 239
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=1.2 Score=40.08 Aligned_cols=171 Identities=11% Similarity=0.052 Sum_probs=106.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHH----HHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVL----SACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
-|..+.+..-++-|+.+-+.- ..+..+...+. .-+.+.|++++|..-|-+-.. -+.|. .++.-
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~k 406 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHH
Confidence 345555666666676654432 22333333333 335677888888777666543 23333 23555
Q ss_pred HHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHH
Q 036775 88 YVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGL 164 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 164 (293)
|....++..--.+++.+.+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..|.+.+-+++|.
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 66666666666777777665 45567788999999999988888776654 3322 112445677777888888887
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
.+-..... +... +--.+-..+++++|++.++.++
T Consensus 484 ~LA~k~~~------he~v---l~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK------HEWV---LDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc------CHHH---HHHHHHHhcCHHHHHHHHhcCC
Confidence 76555432 2222 3334556789999999999985
No 240
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.19 Score=40.84 Aligned_cols=94 Identities=9% Similarity=-0.056 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC-CC-CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 181 QHYACVVDMYGRAGLLEEAEAFIREM-PI-EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 181 ~~~~~l~~~~~~~g~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
.+++.+.-+|.+.+++.+|++.-... .. .+|+.....=..++...|+++.|...|+++.+..|.|...-+-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667777888888888888877766 32 44666666677778888889999999988888888887777777777766
Q ss_pred CCCHHHH-HHHHHHHHH
Q 036775 259 ADRWEDA-NKIRDEIRR 274 (293)
Q Consensus 259 ~g~~~~a-~~~~~~m~~ 274 (293)
..++.+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6555554 667777754
No 241
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.90 E-value=1.1 Score=39.45 Aligned_cols=221 Identities=11% Similarity=0.051 Sum_probs=114.7
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH--------HHHHHHHHHcCCHHHHHHHHHHhhhCCc
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG--------NAVINMYVKCGDVGIAIQVFNMLAYKDM 109 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 109 (293)
-.|.+..|..+.......-.++.|+..|-+...-.|+..-...- .+=+.+ --|++++|+++|-++.++|.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 45788888888877777677777777666554322221111111 111222 24788999999888877653
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHH----------------HHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHH------
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSL----------------MIINGVFPDDVTFIALISACSHGGLVDQGLILF------ 167 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~----------------m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~------ 167 (293)
.|..+.+.|+|-.+.++++. |-.. -.+...|......|...|+.+.-.+.+
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELF 838 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence 23444445555554444432 1110 012223444444455554444322222
Q ss_pred HHhhhh-cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh-----
Q 036775 168 KAMSTV-YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK----- 241 (293)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 241 (293)
..+... ...+-+....-.+.+++.+.|..++|.+.+-+.+. |.. -+..|...+++.+|.++-+...-.
T Consensus 839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-pka-----Av~tCv~LnQW~~avelaq~~~l~qv~tl 912 (1189)
T KOG2041|consen 839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-PKA-----AVHTCVELNQWGEAVELAQRFQLPQVQTL 912 (1189)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC-cHH-----HHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 111110 12344566677788889999999999888877752 222 234455555555444443322110
Q ss_pred -------cCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 242 -------KGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 242 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.-.+.. ..--|..+.+.|++-+|-+++-+|.+
T Consensus 913 iak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 913 IAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 000111 11235566677777777777777754
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.89 E-value=0.73 Score=39.02 Aligned_cols=135 Identities=10% Similarity=0.065 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
....+.++..+-+.|..+.|+++-..-. .-.....+.|+++.|.++.+. ..+...|..|.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg 354 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHH
Confidence 4447888898999999999987754422 223445577888888776433 34677999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 86 NMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++..+
T Consensus 355 ~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999775 467788888889999888888888776653 4445555666788888888
Q ss_pred HHHHhh
Q 036775 166 LFKAMS 171 (293)
Q Consensus 166 ~~~~~~ 171 (293)
++.+..
T Consensus 424 lL~~~~ 429 (443)
T PF04053_consen 424 LLIETG 429 (443)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 877654
No 243
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.86 E-value=0.0016 Score=45.69 Aligned_cols=129 Identities=10% Similarity=0.024 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (293)
.++..+.+.+.+..+..+++.+...+...+....+.++..|++.+..+...++++... .+.+ ..++..+.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-----~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-----DKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-----THHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-----HHHHHHHHhc
Confidence 3566667778888888888888877666678888888888888887777777776322 2222 3467777888
Q ss_pred CChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 194 GLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 194 g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
|.+++|.-++.+++...... ..+...++++.|..++.. ..++.+|..++..+...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al------~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEAL------EILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCS------STSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHHH------HHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 88888888888875322211 113345566666643322 3456788888888877665
No 244
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.85 E-value=0.55 Score=36.71 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCcccHHHHHHHHHhcCCHHHHHHHH
Q 036775 63 YVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KDMISWSTVISGLAMNGCGRQALQLF 132 (293)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~ 132 (293)
++.+.+....+-.++..+....+..+++.+++.+-.++++.... .|...|...|......|+..-...+.
T Consensus 187 EvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 187 EVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 33333333333444444444455555555555555555544332 14444555555555555544444433
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.83 E-value=0.34 Score=32.93 Aligned_cols=52 Identities=17% Similarity=0.055 Sum_probs=22.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 120 AMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+..|+.+.|++.|.+....-+ -....||.-..++.-.|+.++|..-+++..+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344444444444444433211 1334444444444444444444444444443
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.68 Score=36.25 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=79.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChH
Q 036775 118 GLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
.....|+..+|..+|+...+.... +...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 345567777777777777665433 3455566667777777777777777776541 11111112223445555555555
Q ss_pred HHHHHHHhCCCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCC
Q 036775 198 EAEAFIREMPIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKK--GVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 198 ~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g 260 (293)
+...+-.+....| |...-..+...+...|+.+.|...+-.+.+.+ -.+...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 5555555553344 44455556666777777777766654444433 234445555666655555
No 247
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.74 E-value=0.52 Score=37.53 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCC---hhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 126 RQALQLFSLMIINGVFPDDV-TFIALISACSHGGL---VDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 126 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
+.++.+|+.+.+.|...+-. -+.+-+-++..... ...+..+++.+.+ .++++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 44555666666655544321 22222222222211 3355566666665 46666655555443
No 248
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.70 E-value=0.16 Score=39.72 Aligned_cols=80 Identities=13% Similarity=0.232 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh----hcCCCcchhHHH
Q 036775 109 MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQTQHYA 184 (293)
Q Consensus 109 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 184 (293)
..++..++..+...|+.+.+...++++...... +...|..++.+|.+.|+...|+..|+++.+ ..|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 445666777777777777777777777665443 666777777777777777777777666653 346667666665
Q ss_pred HHHHH
Q 036775 185 CVVDM 189 (293)
Q Consensus 185 ~l~~~ 189 (293)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55555
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.68 E-value=0.37 Score=33.39 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIIN 138 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~ 138 (293)
.++.+|.+.+++++|...+++..+.
T Consensus 52 ~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 52 DLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.47 Score=37.86 Aligned_cols=149 Identities=11% Similarity=-0.014 Sum_probs=101.6
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch----hHHHHHHHHHHHcCC
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN----LVGNAVINMYVKCGD 93 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 93 (293)
.+|++.+|-..++++.+. .|.|...+...-.+|.-.|+.......++.+.. .-.++. .+...+.-++..+|-
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 356777777888888776 677777888888888888988888888888765 233444 333455666778899
Q ss_pred HHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775 94 VGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIIN---GVFPDDVTFIALISACSHGGLVDQGLILF 167 (293)
Q Consensus 94 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 167 (293)
+++|++.-++..+- |.-.-.++...+-.+|++.++.++..+-... +-..-..-|-...-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887764 4445566777788889999998887664321 11111122333333455668899999888
Q ss_pred HHh
Q 036775 168 KAM 170 (293)
Q Consensus 168 ~~~ 170 (293)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 754
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.55 E-value=0.85 Score=36.87 Aligned_cols=200 Identities=11% Similarity=0.009 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH----HHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCc---hh
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVF----QEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVS---NL 79 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~ 79 (293)
.+|..+..+.++.|.+++++..- +-........---..|..+-+++-+.-++.+++.+-..-....|..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34556667777777777665432 111111000111223444445555555566666655554443344331 12
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCcHhH
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGCGRQALQLFSLMII----NGVFPDDVT 146 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~ 146 (293)
...++..++.-.+.++++++.|+...+- ...+|-.|...|.+..|+++|.-+..+..+ .++.--..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3345666777778899999999877642 345788999999999999998877666543 233311122
Q ss_pred HH-----HHHHHHhcCCChhHHHHHHHHhhhhcCCCcch----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 147 FI-----ALISACSHGGLVDQGLILFKAMSTVYEIVPQT----QHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 147 ~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
|. .+.-++...|.+-+|.+.-++..+..-...|. .....+.+.|...|+.+.|+.-|+..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 32 33345677888888877776665422222233 34556778899999999988887765
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.54 E-value=0.79 Score=35.14 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 88 YVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
-.+.|++++|.+.|+.+... ...+--.++.++.+.+++++|+...++....-+.-...-|..-|.++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 34667777777777777653 12234445566677777777777777766543322223344444443
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.54 E-value=0.069 Score=28.61 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKT 35 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~ 35 (293)
.+|..+...|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45777888888888888888888888885
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.83 Score=34.80 Aligned_cols=201 Identities=9% Similarity=-0.034 Sum_probs=104.7
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCC--cccHHHHHHHHHh
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKD--MISWSTVISGLAM 121 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~ 121 (293)
.|.-...+|....++++|...+....+ +...+...|. ....++.|.-+.+++.+-+ +..|+.-...|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344455566677777777777666655 3333322221 1223344444444444332 2235555666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcC----CCcchhHHHHHHHHHHhcCChH
Q 036775 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYE----IVPQTQHYACVVDMYGRAGLLE 197 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~ 197 (293)
+|.++.|-..+++.-+. ...-++++|+++|++...... ...-...+..+.+.|.+..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777766666654321 123344555555554432110 0111233455556667777777
Q ss_pred HHHHHHHhCC-------CCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCchhhHHHHHHHHhcCCCHHHH
Q 036775 198 EAEAFIREMP-------IEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNKK----GVSVGTFALMSNTFAGADRWEDA 265 (293)
Q Consensus 198 ~a~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a 265 (293)
+|-..+.+-+ .-++. ..|.+.|-.+....++..|+..++.-.+.. +.+..+...|+.+|- .|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence 6665554441 11221 134444555666677777777776644322 345567777777764 4566666
Q ss_pred HHHHH
Q 036775 266 NKIRD 270 (293)
Q Consensus 266 ~~~~~ 270 (293)
.+++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 65543
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.41 E-value=0.85 Score=36.87 Aligned_cols=44 Identities=14% Similarity=0.081 Sum_probs=19.6
Q ss_pred HcCCHHHHHHHHHHHHHcc-CCCchHHHHHHHHHHhcccCcchHH
Q 036775 18 ERGFCEEAVSVFQEMEKTK-EAEPNEATLVNVLSACSSISALSFG 61 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a 61 (293)
...+.++|+..|.+-...- ...---.++..+..+.++.|.++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 3455566666655544321 0111122444444555555555444
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.40 E-value=0.56 Score=32.54 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=25.3
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+.|++++|.+.|+.+.......+ ....-..|+.+|.+.+++++|...+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345555555555555554221111 1123344555555555555555555554
No 257
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.39 E-value=1.4 Score=37.18 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=27.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCch---HhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 186 VVDMYGRAGLLEEAEAFIREM-PIEAE---WSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
+..+..+.|+.++|++.++++ +..|. ......|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 444445555555555555555 22221 12344455555555555555555555443
No 258
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.38 E-value=0.36 Score=39.59 Aligned_cols=233 Identities=11% Similarity=-0.027 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----HHccCCCchHHHHHHHHHHhcccCcchHHHHHHHH----HHhhcCCC-Cc
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEM----EKTKEAEPNEATLVNVLSACSSISALSFGQYVHSY----ISTRYDLS-VS 77 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m----~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~-~~ 77 (293)
..|..|-.+|.-.+++++|++.-..= +..|...-...+...+.+.+--.|.+++|.-.-.+ ..+ .|-. ..
T Consensus 56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~are-LgDrv~e 134 (639)
T KOG1130|consen 56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARE-LGDRVLE 134 (639)
T ss_pred HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHH-HhHHHhh
Confidence 34666777777788888888754321 11110111122223344444445666666433222 111 1111 12
Q ss_pred hhHHHHHHHHHHHcCC--------------------HHHHHHHHHHhhh---C------CcccHHHHHHHHHhcCCHHHH
Q 036775 78 NLVGNAVINMYVKCGD--------------------VGIAIQVFNMLAY---K------DMISWSTVISGLAMNGCGRQA 128 (293)
Q Consensus 78 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a 128 (293)
...+-.|...|...|+ ++.|.++|..-.+ . ...+|..|.+.|.-.|+++.|
T Consensus 135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a 214 (639)
T KOG1130|consen 135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA 214 (639)
T ss_pred hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence 2344456666665442 2334444433221 1 334677777777778899999
Q ss_pred HHHHHHH----HhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhhh----hcCCCcchhHHHHHHHHHHhcCChHHH
Q 036775 129 LQLFSLM----IINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMST----VYEIVPQTQHYACVVDMYGRAGLLEEA 199 (293)
Q Consensus 129 ~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a 199 (293)
+..-+.- ++.|-+. ....+..+..++.-.|+++.|.+.|+.... ...-........+|...|.-...+++|
T Consensus 215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA 294 (639)
T KOG1130|consen 215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA 294 (639)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 8766542 2333332 235677788888889999999998876543 112223345667788889888999999
Q ss_pred HHHHHhC-------C-CCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 200 EAFIREM-------P-IEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 200 ~~~~~~~-------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
+.++.+- + .--....+.+|..+|...|..+.|..+.+.-.+
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9988654 1 122445677888888888988888887765554
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.35 E-value=0.17 Score=32.19 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
+.-++.+-++.+......|++....+.+++|.+.+++..|.++++..+.+.+ .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 5567778888888888999999999999999999999999999998885333 34556766653
No 260
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.33 E-value=0.15 Score=32.75 Aligned_cols=63 Identities=10% Similarity=0.169 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVD 188 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (293)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++.+.+ +....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3446777788888888999999999999999999999999999999987444 33337777764
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.29 E-value=1.5 Score=36.81 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=75.4
Q ss_pred cchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHc---------CCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcC
Q 036775 57 ALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKC---------GDVGIAIQVFNMLAYK---DMISWSTVISGLAMNG 123 (293)
Q Consensus 57 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~ 123 (293)
+.+.|..+|.+........|+ ...|..+..++... .+..+|.++-++..+. |..+...+..++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 455667777777632234443 34444444333322 2234455555555543 4455555555556666
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 203 (293)
+.+.|...|++....++. ...+|......+.-.|+.++|.+.+++..+....+....+....++.|+..+ +++|+.++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 777777777777654322 2334444444455667777777777775542222222233334444555444 45555544
Q ss_pred H
Q 036775 204 R 204 (293)
Q Consensus 204 ~ 204 (293)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.98 Score=34.43 Aligned_cols=203 Identities=16% Similarity=0.088 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
.|.-...+|....++++|...+.+..+- .+.|...|. ....++.|.-+.+++.+ .+.-...|+-....
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfh-------AAKayEqaamLake~~k---lsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFH-------AAKAYEQAAMLAKELSK---LSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHH-------HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHH
Confidence 3555566777788888888877776542 233333332 22344555556666544 33444556777888
Q ss_pred HHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCcHhHHHHHHHHHhcCCChhH
Q 036775 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIIN---GV--FPDDVTFIALISACSHGGLVDQ 162 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~~~~~~ 162 (293)
|..+|..+.|-..+++.-+ ...+.++++|+++|.+...- +- ..-...+...-..+.+.+.+++
T Consensus 101 Y~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred HHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8888888887777765532 13355677777777665321 11 1122334555566677777777
Q ss_pred HHHHHHHhhhh---cCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhC---C---CCchHhHHHHHHHHHHhcCChhhch
Q 036775 163 GLILFKAMSTV---YEIVPQT-QHYACVVDMYGRAGLLEEAEAFIREM---P---IEAEWSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 163 a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~---~---~~~~~~~~~~l~~~~~~~~~~~~a~ 232 (293)
|-..+..-... ..--++. ..|-..|-.|.-..++..|...++.- + ..-+..+...|+.+| ..|+.+.+.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 66555443210 0111222 23555566677778899999999884 1 123555777788777 456666665
Q ss_pred HHH
Q 036775 233 PIR 235 (293)
Q Consensus 233 ~~~ 235 (293)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 554
No 263
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.18 E-value=0.62 Score=31.77 Aligned_cols=137 Identities=12% Similarity=0.041 Sum_probs=78.4
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH---HHHHHHHHHcC
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG---NAVINMYVKCG 92 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~ 92 (293)
..-.|.+++-.++..+..... +..-++-+|--....-+-+-..++++.+ |--.|...+ ..++.+|++.|
T Consensus 12 ~ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsI----GkiFDis~C~NlKrVi~C~~~~n 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSI----GKIFDISKCGNLKRVIECYAKRN 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHH----GGGS-GGG-S-THHHHHHHHHTT
T ss_pred HHHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHH----hhhcCchhhcchHHHHHHHHHhc
Confidence 445688888888888876643 2333444443333333444445555554 333343332 34455555544
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
.. ....+..+..+...|+-+.-.+++.++.+ +-.+++.....+..+|.+.|+..++.+++.+.-+
T Consensus 84 ~~--------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 84 KL--------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ch--------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 32 23345566777888888888888888875 3456778888888899999999999999888876
Q ss_pred hcCC
Q 036775 173 VYEI 176 (293)
Q Consensus 173 ~~~~ 176 (293)
.|+
T Consensus 149 -kG~ 151 (161)
T PF09205_consen 149 -KGL 151 (161)
T ss_dssp -TT-
T ss_pred -hch
Confidence 564
No 264
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.16 E-value=2.3 Score=38.12 Aligned_cols=247 Identities=7% Similarity=-0.047 Sum_probs=124.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC 91 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (293)
.+..+.+.+++...+..+.. .+.+...-.....+....|+.++|......+=. .| ...+..++.++..+.+.
T Consensus 105 ~l~~La~~~~w~~~~~~~~~------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cC-CCCChHHHHHHHHHHHc
Confidence 34455566777766652211 234444555666677777776666555555433 12 22344557777777766
Q ss_pred CCHHHHHHHHHHhh----hCCcccHHHHHHHH-----------H-hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH-
Q 036775 92 GDVGIAIQVFNMLA----YKDMISWSTVISGL-----------A-MNGCGRQALQLFSLMIINGVFPDDVTFIALISAC- 154 (293)
Q Consensus 92 ~~~~~A~~~~~~~~----~~~~~~~~~li~~~-----------~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~- 154 (293)
|.+.... +++++. ..+...-..+...+ . -..+...+..++.. +.|+...-..++.++
T Consensus 177 g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~ 250 (644)
T PRK11619 177 GKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFA 250 (644)
T ss_pred CCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHH
Confidence 6544332 222221 11111111111111 0 01122222222111 122321111111122
Q ss_pred -hcCCChhHHHHHHHHhhhhcCCCcch--hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHhHHHHHHHHHHhcCChhh
Q 036775 155 -SHGGLVDQGLILFKAMSTVYEIVPQT--QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWSVWGALLNACRIHRNDEM 230 (293)
Q Consensus 155 -~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 230 (293)
....+.+.|...+..........+.. .+...+.......+..+++.+++... ....+......-+......++.+.
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHH
Confidence 13445677888888765433443333 23344443334433366777777765 222344444555555567888888
Q ss_pred chHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 231 FDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
+...+..+.........-.-.+.+++...|+.++|...|+++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777775544444555666777877788888888888876
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=0.84 Score=32.80 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=69.6
Q ss_pred HHHcCCHHHHHHHHHHhhhCCcccHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCcHh-HHH--HHHHHHhcCCC
Q 036775 88 YVKCGDVGIAIQVFNMLAYKDMISWSTVIS-----GLAMNGCGRQALQLFSLMIINGVFPDDV-TFI--ALISACSHGGL 159 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~--~ll~~~~~~~~ 159 (293)
+.+.+..++|+.-|..+.+.+--.|-.|.. .....|+...|...|++.-.....|-.. -.. .-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345567777777777777765555555433 3455677777777777776554444322 111 11122456777
Q ss_pred hhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 160 VDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+++.....+-+.. .+-+.....-..|.-+-.+.|++.+|..+|..+
T Consensus 148 y~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 148 YDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 7777776666654 232223334455666666777777777777766
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.97 E-value=0.69 Score=33.74 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=46.3
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----Ccc------
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYK-----DMI------ 110 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~------ 110 (293)
.+..+...|.+.|+.+.|.+.+..+.. ....+.. ..+..+|......+++..+...+.+.... |..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 455555556666666666666666655 3333332 23455566666666666666655555421 111
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHH
Q 036775 111 SWSTVISGLAMNGCGRQALQLFSLM 135 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~~a~~~~~~m 135 (293)
+|..+ .+...+++.+|-+.|-+.
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 11111 123456777777766554
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.97 E-value=0.063 Score=27.30 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=22.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 248 TFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+|..|...|.+.|++++|.++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477889999999999999999998543
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.95 E-value=0.46 Score=32.33 Aligned_cols=88 Identities=16% Similarity=0.036 Sum_probs=65.9
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHh---HHHHHHHHHHhc
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWS---VWGALLNACRIH 225 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~---~~~~l~~~~~~~ 225 (293)
+....|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++. +-+ ... .|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 46788999999999999885 44556788999999999999999999888876 211 222 222223337888
Q ss_pred CChhhchHHHHHHHhhcC
Q 036775 226 RNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~ 243 (293)
|+.+.|..-|+..-+.+.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 999999888887776654
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.89 E-value=2.1 Score=36.31 Aligned_cols=58 Identities=14% Similarity=-0.048 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-cHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIINGVFP-DDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
.+..++-+.|+.++|.+.|++|.+....- .......|+.++...+.+.++..++.+.-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 35555666677777777777776543221 23355666777777777777777776654
No 270
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.89 E-value=3.5 Score=38.81 Aligned_cols=125 Identities=14% Similarity=0.115 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHH----HhcCCChhHHHHHHH
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISA----CSHGGLVDQGLILFK 168 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~ 168 (293)
+++.|+..+..+. ...|.-.++.--++|.+++|+.++ .|+...+..+..+ +.....+++|--.|+
T Consensus 895 ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 895 RYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred HHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444444443332 223333333334444455554443 3454444444333 334455555555555
Q ss_pred HhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHh--HHHHHHHHHHhcCChhhchHHHHHH
Q 036775 169 AMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
..-+ ...-+.+|..+|+|.+|+.+..++....+.. +-..|+..+...++.-+|-++..+.
T Consensus 964 ~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 964 RCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred Hhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4322 1224456666666666666666664222322 1244555566666655555554443
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.86 E-value=0.45 Score=37.21 Aligned_cols=71 Identities=7% Similarity=0.061 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh----hcCCCCchhHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST----RYDLSVSNLVG 81 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 81 (293)
+..++..+...|+++.+.+.++++... -+-+...|..++.++.+.|+...|...|+++.+ ..|+.|...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 344445555555555555555555544 244455555555555555555555555555444 23444444443
No 272
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.80 E-value=1.6 Score=34.55 Aligned_cols=157 Identities=8% Similarity=0.012 Sum_probs=75.4
Q ss_pred cHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 111 SWSTVISGLAMNGCGR---QALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 111 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
+...++.++...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|.. .+......+..++
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~--~~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIR--SVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHH--hcccccchHHHHH
Confidence 4555666666666543 455555555443222 234455556666667778888888888876 2322223344344
Q ss_pred HHH---HhcCChHHHHHHHHhC---CCCchHh-HHHH-HHHH-H--HhcCC------hhhchHHHHHHHhhc--CCchhh
Q 036775 188 DMY---GRAGLLEEAEAFIREM---PIEAEWS-VWGA-LLNA-C--RIHRN------DEMFDPIRQELVNKK--GVSVGT 248 (293)
Q Consensus 188 ~~~---~~~g~~~~a~~~~~~~---~~~~~~~-~~~~-l~~~-~--~~~~~------~~~a~~~~~~~~~~~--~~~~~~ 248 (293)
..+ .... ...|...+..+ ...|... .... ++.. + .+.++ .+....++..+.+.. +.+..+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 3322 23444444444 2222221 1111 1111 1 11111 333444444333322 434433
Q ss_pred HHHH-------HHHHhcCCCHHHHHHHHHH
Q 036775 249 FALM-------SNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 249 ~~~l-------i~~~~~~g~~~~a~~~~~~ 271 (293)
-..+ +..+-+.+++++|.+.|+-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 2222 3345578999999999874
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.76 E-value=0.099 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEME 33 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~ 33 (293)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47778888888888888888888854
No 274
>PRK11906 transcriptional regulator; Provisional
Probab=94.55 E-value=2.5 Score=35.60 Aligned_cols=160 Identities=9% Similarity=0.001 Sum_probs=100.4
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHHHHccCCCchH-HHHHHHHHHhc---------ccCcchHHHHHHHHHH
Q 036775 7 VSW--TTMIGGYAER-----GFCEEAVSVFQEMEKTKEAEPNE-ATLVNVLSACS---------SISALSFGQYVHSYIS 69 (293)
Q Consensus 7 ~~y--~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~ 69 (293)
..| ...+.+.... ...+.|+.+|.+........|+- ..|..+..++. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 6666665552 23567888999988443356663 33333333221 1234455666666666
Q ss_pred hhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CcHh
Q 036775 70 TRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVF-PDDV 145 (293)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~ 145 (293)
+ --+.|......+.....-.++++.|..+|++...- ...+|......+.-+|+.++|.+.+++..+..+. ....
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 6 44557777777888788888999999999998753 2345655666667789999999999996654221 1223
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHH
Q 036775 146 TFIALISACSHGGLVDQGLILFKA 169 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~ 169 (293)
.....+..|+.. .++.|++++-+
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhh
Confidence 333344455554 46666666544
No 275
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.54 E-value=1.2 Score=32.02 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=72.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh-HHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchh-HHHHHH
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV-TFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQ-HYACVV 187 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~ 187 (293)
..|..-++ +.+.+..++|+.-|..+.+.|..--.. .-..........|+...|...|++.-.+.. .|-.. -...|=
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 34444443 456677888888888888776542111 111222335577888888888888775322 22221 111121
Q ss_pred --HHHHhcCChHHHHHHHHhCCCCchH---hHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 188 --DMYGRAGLLEEAEAFIREMPIEAEW---SVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 188 --~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
..+...|.++....-.+-+....++ ..-..|.-+--+.|++..|...|..+....
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2345577777777777766212221 122334444567777777777777766643
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.43 E-value=1.5 Score=32.68 Aligned_cols=200 Identities=12% Similarity=-0.036 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCc---ccHHHHHH-
Q 036775 42 EATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDM---ISWSTVIS- 117 (293)
Q Consensus 42 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~- 117 (293)
...+......+...+.+..+...+...............+......+...+.+..+.+.+......+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 34445555555556666666555555543102233334445555555555666666666666554211 12222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc-chhHHHHHHHHHHhcC
Q 036775 118 GLAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVP-QTQHYACVVDMYGRAG 194 (293)
Q Consensus 118 ~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 194 (293)
.+...|+++.|...+.+...... ......+......+...++.+.+...+..... ..+. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcc
Confidence 45566666666666666543211 01222333333334455666666666666654 2222 2445555555666666
Q ss_pred ChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775 195 LLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 195 ~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 243 (293)
+++.+...+... ...|+ ...+..+...+...+..+.+...+.+.....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 666666666555 22332 22233333333344445555555555555444
No 277
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.42 E-value=1.6 Score=32.77 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=15.8
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
.||--|..-+...|+.++|..+|+-..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 355556666666666666666665443
No 278
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.33 E-value=1.8 Score=33.22 Aligned_cols=158 Identities=12% Similarity=0.046 Sum_probs=107.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh-
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR- 192 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 192 (293)
+..-.+.|++++|...|+.+...-+ +-...+-..++.++.+.+++++|....++..+.++-+||.. |..-|.+++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHh
Confidence 3445678999999999999986532 22456777788889999999999999999998777677663 3333333332
Q ss_pred ------cCChHHHHHHHHhC----------CCCchHhH-----------HH-HHHHHHHhcCChhhchHHHHHHHhhcCC
Q 036775 193 ------AGLLEEAEAFIREM----------PIEAEWSV-----------WG-ALLNACRIHRNDEMFDPIRQELVNKKGV 244 (293)
Q Consensus 193 ------~g~~~~a~~~~~~~----------~~~~~~~~-----------~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (293)
..+...+.+-+..+ +-.||+.. +. .+.+-|.+.|.+..|..-++.+.+..+.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 22333344444333 12233322 11 1223378999999999999999988765
Q ss_pred chhh---HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 245 SVGT---FALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 245 ~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+ +-.+..+|...|-.++|.+.-+-+..
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 5544 56677889999999999988765543
No 279
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.28 E-value=0.31 Score=31.04 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 21 FCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
+.-++.+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.
T Consensus 22 D~we~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555566666656 777777777888888888888888887777764
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.27 E-value=0.99 Score=36.11 Aligned_cols=161 Identities=12% Similarity=-0.013 Sum_probs=116.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH----HHHHHHHhcC
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA----CVVDMYGRAG 194 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g 194 (293)
...+|+..+|-..++++.+. .+.|...+.-.-.+|.-.|+.+.-...++++.. ...++...|. .+.-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578889999999998876 445888888888999999999999999988875 3345543333 3444566799
Q ss_pred ChHHHHHHHHhC-CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc----hhhHHHHHHHHhcCCCHHHHHHH
Q 036775 195 LLEEAEAFIREM-PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS----VGTFALMSNTFAGADRWEDANKI 268 (293)
Q Consensus 195 ~~~~a~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~ 268 (293)
-+++|++.-++. .+.+ |.-...++.+.....|+.+++.++..+-...-..+ ..-|-...-.+...+.++.|.++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999888 4444 45566777777888999999998876655543211 12234445566778999999999
Q ss_pred HHHHHHcCCCCCCc
Q 036775 269 RDEIRRMGLKKKTG 282 (293)
Q Consensus 269 ~~~m~~~~~~p~~~ 282 (293)
|+.=.-..+..+..
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99754444555554
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.17 E-value=1.7 Score=32.35 Aligned_cols=216 Identities=12% Similarity=-0.020 Sum_probs=154.1
Q ss_pred CcchHHHHHHHHHHhhcCCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCcccHHHHHHHHHhcCCHHHHH
Q 036775 56 SALSFGQYVHSYISTRYDLS-VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KDMISWSTVISGLAMNGCGRQAL 129 (293)
Q Consensus 56 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~ 129 (293)
+....+...+..... .... ............+...+.+..+...+..... .....+......+...++...+.
T Consensus 37 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALE-LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHh-cCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 445555555555544 1111 1356677888889999999999998887753 24456667777788888999999
Q ss_pred HHHHHHHhCCCCCcHhHHHHHHH-HHhcCCChhHHHHHHHHhhhhcCC--CcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 130 QLFSLMIINGVFPDDVTFIALIS-ACSHGGLVDQGLILFKAMSTVYEI--VPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 130 ~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+.+.........+ ......... .+...|+++.+...+..... ... ......+......+...++.+++...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988765443 222223333 78899999999999999854 221 123344455555577889999999999988
Q ss_pred -CCCch--HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 207 -PIEAE--WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 207 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...++ ...+..+...+...+..+.+...+.......+.....+..+...+...+..+++...+.+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444 566777788888899999999999999888876555666666666677789999988887665
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.15 E-value=2.3 Score=33.66 Aligned_cols=135 Identities=10% Similarity=0.072 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----c---CCCchH-----HHHHHHHHHhcccCcch---HHHHHHHHHHhhc
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKT----K---EAEPNE-----ATLVNVLSACSSISALS---FGQYVHSYISTRY 72 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~----~---~~~p~~-----~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~ 72 (293)
.||.=...+.+..+++.|...+++..+. + ...|+. .+...++.++...+..+ +|..+.+.+....
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 3444444443333777777666655332 1 122332 24445555565555433 4455555554423
Q ss_pred CCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCcH
Q 036775 73 DLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLA--MNGCGRQALQLFSLMIINGVFPDD 144 (293)
Q Consensus 73 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~ 144 (293)
+.+ +.++..-+..+.+.++.+++.+.+.+|... ....+..+++.+. .......|...++.+....+.|..
T Consensus 118 ~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 118 GNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred CCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 332 333344455555577777777777777654 2344555554442 223345566666665554444444
No 283
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.14 E-value=0.34 Score=31.18 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHH
Q 036775 24 EAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVI 85 (293)
Q Consensus 24 ~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 85 (293)
+..+-++.+.... ..|++....+.+++|.+.+++..|.++++.++.+.+. ....|..++
T Consensus 28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 4555556665555 7788888888888888888888888888877763332 222554444
No 284
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.03 E-value=0.19 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888888888999999998888877
No 285
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.99 E-value=4.6 Score=36.55 Aligned_cols=177 Identities=11% Similarity=-0.036 Sum_probs=113.7
Q ss_pred HHHHHHhcccCcchHHHHHHHHHHhhcCCCCch--hHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcC
Q 036775 46 VNVLSACSSISALSFGQYVHSYISTRYDLSVSN--LVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNG 123 (293)
Q Consensus 46 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 123 (293)
..-|....+...++-|..+-+. .+.+++. .+.....+.+.+.|++++|...|-+-..--. -..+|.-|....
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~----~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS----QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHH
Confidence 3444455555556666555444 3444443 2334455666778999999888866543211 123566666777
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFI 203 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 203 (293)
+..+-..+++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+..-. ....-| ....+..+.+.+-.++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 777888888888888886 666668899999999999988887766542 222223 334667778888888888888
Q ss_pred HhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 204 REMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 204 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
...+..++. ...+ +-..+++++|.++++.+
T Consensus 487 ~k~~~he~v--l~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKKHEWV--LDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhccCHHH--HHHH---HHHhcCHHHHHHHHhcC
Confidence 877643322 2222 44567788888776544
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.91 E-value=0.17 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+|..+..+|...|++++|...|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4577777888888888888888877665
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.88 E-value=0.29 Score=38.51 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=76.4
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh
Q 036775 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV 145 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 145 (293)
.|.+....+...++..-....+++.++..+-+++.. -..+-.++++.+ -.-++++++.++..=.+.|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 366666677777777777788899999888777642 111222333333 3457789999999989999999999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 146 TFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 146 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+++.+|..+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999998887765
No 288
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.54 E-value=3.5 Score=33.70 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=43.2
Q ss_pred hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc----CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 211 EWSVWGALLNACRIHRNDEMFDPIRQELVNKK----GVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 211 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+|..+...+.+.|.++.|...+..+.... ...+.....-+..+-..|+..+|...+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44467777777778888887777777766644 11344455556667777888888888777766
No 289
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.48 E-value=3.8 Score=33.92 Aligned_cols=162 Identities=10% Similarity=-0.125 Sum_probs=106.7
Q ss_pred chHHHHHHHHHH-hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCccc-------
Q 036775 40 PNEATLVNVLSA-CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMIS------- 111 (293)
Q Consensus 40 p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------- 111 (293)
|.-.+|..+-.- +.-.++.++|.++--...+. -+.+....-.-..++.-.++.+.|...|++....|+..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 444555444433 56678888888887777661 12222221222234445678899999999888654432
Q ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcch
Q 036775 112 --------WSTVISGLAMNGCGRQALQLFSLMIIN---GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQT 180 (293)
Q Consensus 112 --------~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 180 (293)
|..=.+-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+.++|+.--+.... +.+.-
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~sy 320 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSY 320 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHH
Confidence 222334456789999999999998764 3556667777777788899999999988777664 22221
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 181 -QHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 181 -~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..|..-..++...++|++|.+-++..
T Consensus 321 ikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 321 IKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445666788999999988877
No 290
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.27 E-value=5.1 Score=34.76 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCc--hHhHHHHHHHHHHhcCChhhchHHHHHHHhhc-CCchhhHHHHHHHH
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEA--EWSVWGALLNACRIHRNDEMFDPIRQELVNKK-GVSVGTFALMSNTF 256 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~ 256 (293)
..+|..-+.--...|+++.+.-+|++.-+.. =...|-..+.-....|+.+.+..++.+..+-. +..+.+...-....
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3556666666667777777777777763221 12234444444444477777776666666544 32333333323333
Q ss_pred hcCCCHHHHHHHHHHHHHc
Q 036775 257 AGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 257 ~~~g~~~~a~~~~~~m~~~ 275 (293)
-..|++..|..+++.+...
T Consensus 377 e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HhhccHHHHHHHHHHHHhh
Confidence 4567888888888776553
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.26 E-value=2.2 Score=30.63 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 26 VSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 26 ~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
.+.+..+.+.+ ++|+...+..++..+.+.|++....+++.. ++-+|.......+-.+. +....+.++=-+|.
T Consensus 14 lEYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 34455555566 888888888888888888877665555443 44444433222221221 22233333333444
Q ss_pred hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775 106 YKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170 (293)
Q Consensus 106 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 170 (293)
.+=...+..+++.+...|++-+|+.+.+..... +......++.+..+.++...=..+++-.
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333335666777777888888888877664322 1122234555555555544444444333
No 292
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.02 E-value=4.8 Score=33.81 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=53.8
Q ss_pred hHhHHHHHHHH--HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 036775 211 EWSVWGALLNA--CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283 (293)
Q Consensus 211 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 283 (293)
+...-|.|..+ +..+|++.++...-..+.+-.| ++.+|..+.-++....++++|.+++.. ++|+...
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~ 527 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERM 527 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhh
Confidence 44567777777 5788999999877777766555 999999999999999999999999986 4555443
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.00 E-value=0.35 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
..|..+-..+...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777888888888888888888877
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.00 E-value=8.3 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=10.4
Q ss_pred HHHHhcCCChhHHHHHHHHhh
Q 036775 151 ISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~ 171 (293)
+.+|...|+|.+|..+..++.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhc
Confidence 344445555555555544443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.96 E-value=0.15 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=16.5
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHH
Q 036775 74 LSVSNLVGNAVINMYVKCGDVGIAI 98 (293)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~A~ 98 (293)
.|-+...|+.|...|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3456666777777777777777664
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.93 E-value=0.3 Score=24.06 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+..+...+...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777888888888888888887665
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=4 Score=32.18 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=25.9
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
....++...|..++..... ..+.+...-..++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3444555555555555544 222233334455555555555555555555544
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.68 E-value=2.8 Score=30.17 Aligned_cols=124 Identities=10% Similarity=0.054 Sum_probs=83.6
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHH
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNA 83 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 83 (293)
|+...|..+++.+.+.|++.....+ ...+ +-+|+......+-.+.. ....+.++--+|.++.+. .+..
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~ql----lq~~-Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~-----~~~~ 94 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQL----LQYH-VIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT-----AYEE 94 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH----Hhhc-ccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh-----hHHH
Confidence 6677999999999999997766444 4444 56666555544433332 334445554445442221 3456
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775 84 VINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139 (293)
Q Consensus 84 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 139 (293)
++..+...|++-+|+++.++....+...-..++++....+|...-..+|+-..+.+
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 77889999999999999998766666666778888888888777666666665543
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.65 E-value=0.087 Score=36.86 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=48.0
Q ss_pred HHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHH
Q 036775 48 VLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ 127 (293)
Q Consensus 48 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 127 (293)
++..+.+.+.......+++.+.. .+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NNYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SSS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cccCHHHHHHHHHhcchHHH
Confidence 44555666666666666776665 344455666677777777776666666666522 22333445555566666666
Q ss_pred HHHHHHHH
Q 036775 128 ALQLFSLM 135 (293)
Q Consensus 128 a~~~~~~m 135 (293)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66655554
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.65 E-value=3.9 Score=31.83 Aligned_cols=221 Identities=14% Similarity=0.175 Sum_probs=109.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---c-CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHH----H
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKT---K-EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVG----N 82 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~---~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~ 82 (293)
.+|....+.|++++..+.|.++..- . ....+..+.++++..-+...+.+...++++.-.....-..+...| +
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNt 149 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNT 149 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccc
Confidence 3455666677777777766666431 0 012334455566655555555555555544433311112222222 4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC---------------CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCcHhH
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK---------------DMISWSTVISGLAMNGCGRQALQLFSLMIING-VFPDDVT 146 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~ 146 (293)
-|...|...+++.+..+++.++.+. =...|..=|+.|...++-.....+|++..... ..|-+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl- 228 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL- 228 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-
Confidence 5666677777777777777666531 12456666777777777777777777654321 122222
Q ss_pred HHHHHHHH-----hcCCChhHHHHHHHHhhhhcC--CCcchh---HHHHHHHHHHhcCC--h--HHHHHHHHhCCCCchH
Q 036775 147 FIALISAC-----SHGGLVDQGLILFKAMSTVYE--IVPQTQ---HYACVVDMYGRAGL--L--EEAEAFIREMPIEAEW 212 (293)
Q Consensus 147 ~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~g~--~--~~a~~~~~~~~~~~~~ 212 (293)
...+|+-| .+.|++++|..-|-+.-.... -.|... -|..|..++.+.|- + .+|. -.+..|..
T Consensus 229 ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEI 304 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEI 304 (440)
T ss_pred HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHH
Confidence 22333333 355677766543333222121 122222 24445555555441 1 1110 01234555
Q ss_pred hHHHHHHHHHHhcCChhhchHHHHH
Q 036775 213 SVWGALLNACRIHRNDEMFDPIRQE 237 (293)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~ 237 (293)
.....++.+|. .++..+.+++++.
T Consensus 305 lAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 305 LAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHHHh-cccHHHHHHHHHh
Confidence 66677777773 3455555555443
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.46 E-value=0.32 Score=25.25 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 246 VGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998755
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.45 E-value=0.45 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45778888888888888888888887754
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.43 E-value=2.9 Score=29.75 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 036775 120 AMNGCGRQALQLFSLMI 136 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~ 136 (293)
...|+|.+|..+|+++.
T Consensus 55 i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELE 71 (160)
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 33444444444444443
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.28 E-value=2.2 Score=31.59 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhc--CCCcchhHHHHHHHHHHhcCChHHHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVY--EIVPQTQHYACVVDMYGRAGLLEEAE 200 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~ 200 (293)
.-+.|...|-++...+.--++.....+...| ...+.+++.+++....+.. +-.+|+..+..|+..|.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3367777777777776554544444444444 4667888888877776522 22466777888888888888887774
No 305
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.91 E-value=0.53 Score=37.65 Aligned_cols=93 Identities=6% Similarity=-0.049 Sum_probs=54.6
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCC-chHhHHHHHHHHHHhcCCh
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIE-AEWSVWGALLNACRIHRND 228 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~ 228 (293)
..-|.+.|.+++|+..|..... -.+-|..++..-..+|.+..++..|+.--... .+. .-...|..-..+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3456778888888888877664 22337777777777888887777665433332 111 1122344444444455666
Q ss_pred hhchHHHHHHHhhcCCc
Q 036775 229 EMFDPIRQELVNKKGVS 245 (293)
Q Consensus 229 ~~a~~~~~~~~~~~~~~ 245 (293)
.+|..-++...+..|.+
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 66666666666655543
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=4.6 Score=35.21 Aligned_cols=123 Identities=20% Similarity=0.084 Sum_probs=58.0
Q ss_pred HcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHH
Q 036775 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKA 169 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 169 (293)
-.|+++.|..++..+.++ .-+.++.-+.+.|-.++|+++- +|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 345556555555444422 2334444455555555554431 222111 1122345666666555444
Q ss_pred hhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 170 MSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 32 233466666666666666666666655421 34444444455554444433333333
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.66 E-value=3.6 Score=29.26 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=25.4
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHHHHHHhcCChHHHHHHHHhC
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+.++.+++..++..+.- ..|..... ..-...+...|+|.+|.++|+++
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355566666666666653 23332211 11223355566666666666666
No 308
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.60 E-value=8.6 Score=33.45 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=123.6
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI 151 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 151 (293)
+++..+|..-+..-.+.|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 345566788888888999999999999998866 33456556665666699998888887766554432332222222
Q ss_pred HHHhcCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHH---HHHHhC-CCCchHhH----HHHHHHH-
Q 036775 152 SACSHGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAE---AFIREM-PIEAEWSV----WGALLNA- 221 (293)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~-~~~~~~~~----~~~l~~~- 221 (293)
...-..|+.+.|..+++.+.+ .+ |+. ..-..-+....+.|+.+.+. .++... ...-+... +....+-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~--e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIES--EY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHh--hC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 223456799999999999987 44 544 33344556677788888887 444444 11112211 2222222
Q ss_pred HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCC
Q 036775 222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGAD 260 (293)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g 260 (293)
+...++.+.|..++.++.+..|++...|..++......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 567889999999999999999999999998888877655
No 309
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.59 E-value=11 Score=34.61 Aligned_cols=197 Identities=13% Similarity=0.064 Sum_probs=112.4
Q ss_pred HHcCCHHHHHHHHHHhhh----CCc-------ccHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCcHhHHHHHHH
Q 036775 89 VKCGDVGIAIQVFNMLAY----KDM-------ISWSTVIS-GLAMNGCGRQALQLFSLMIIN----GVFPDDVTFIALIS 152 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~----~~~-------~~~~~li~-~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~ 152 (293)
....++.+|..++.+... ++. ..|+.+-. .....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345788999988887763 221 14555433 334578899999888877653 23345566677777
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhH---HHHH--HHHHHhcCChH--HHHHHHHhC-----CCC----chHhHHH
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQH---YACV--VDMYGRAGLLE--EAEAFIREM-----PIE----AEWSVWG 216 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~--~a~~~~~~~-----~~~----~~~~~~~ 216 (293)
+..-.|++++|..+..+..+. .-.-+... |..+ ...+...|+.. +.+..|... +.. +-..++.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 788889999999888777652 11223322 2222 23455667332 223333322 111 2233455
Q ss_pred HHHHHHHh-cCChhhchHHHHHHHhhcCCch-h--hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775 217 ALLNACRI-HRNDEMFDPIRQELVNKKGVSV-G--TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286 (293)
Q Consensus 217 ~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 286 (293)
.++.++.+ .+...++..-++......+... . .+..|+......|+.++|...++++......+....+|.
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
Confidence 55555444 2222233333322222222211 1 234678888899999999999999988766666665554
No 310
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=5.2 Score=30.50 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=31.4
Q ss_pred HHHHHHhc-CChHHHHHHHHhC-----CCCchHhHHHHHHHH---HHhcCChhhchHHHHHHHhhc
Q 036775 186 VVDMYGRA-GLLEEAEAFIREM-----PIEAEWSVWGALLNA---CRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 186 l~~~~~~~-g~~~~a~~~~~~~-----~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 242 (293)
+...|... .++++|+..|+.. +...+...--.++.+ -.+.+++..|..+|+++....
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433 4556666666655 222222222333333 367788888888888777654
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.16 E-value=3.8 Score=34.70 Aligned_cols=127 Identities=10% Similarity=0.045 Sum_probs=68.5
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-C-CCchHhHHHHHHHHHHhcCChhhchH
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-P-IEAEWSVWGALLNACRIHRNDEMFDP 233 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 233 (293)
..|++-.|-+-+....+...-.|+. ...........|.++.+...+... + +.....+...+++.....|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4455555444333333212223333 333334456667777777777666 1 22334456666777777777777777
Q ss_pred HHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcccee
Q 036775 234 IRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGCSWI 286 (293)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 286 (293)
.-+.+....--++.....-.......|-++++...|+++.. +.|.....|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~--~~~~~~~g~v 429 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL--LNPETQSGWV 429 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc--cCChhcccce
Confidence 77777665544444444333344455667777777776654 3344333443
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.87 E-value=12 Score=33.63 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHc-
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKC- 91 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 91 (293)
...+.-.|+++.|++.+-.- .+ .+.+..++...+..+.-.+-.+... ..+.....-.|...-+..||..|.+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~~--~~-~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRN--EF-NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHhh--cc-CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 45566788888888888772 22 5677777777776655433322222 11111011111124466777777764
Q ss_pred --CCHHHHHHHHHHhhhC
Q 036775 92 --GDVGIAIQVFNMLAYK 107 (293)
Q Consensus 92 --~~~~~A~~~~~~~~~~ 107 (293)
.+..+|.+.|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4667777777655543
No 313
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=7.5 Score=34.00 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=70.9
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
...+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+..+ |..|+-.+...|+.+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 344667777777766443 3556688888888888888888888877643 34566666677777665555
Q ss_pred HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchH
Q 036775 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEW 212 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 212 (293)
-....+ .|. .|.-.-+|...|+++++.+++.+-+.-|..
T Consensus 715 a~~~~~-~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r~peA 753 (794)
T KOG0276|consen 715 ASLAKK-QGK------NNLAFLAYFLSGDYEECLELLISTQRLPEA 753 (794)
T ss_pred HHHHHh-hcc------cchHHHHHHHcCCHHHHHHHHHhcCcCcHH
Confidence 555554 332 223344667788888888888777544443
No 314
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.70 E-value=0.41 Score=22.13 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~ 270 (293)
.....+..++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667788888888888888775
No 315
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.56 E-value=4.4 Score=28.32 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=60.4
Q ss_pred cCCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHhhh---------CCcccHHHHHHHHHhcCC-HHHHHHHHHHHHhCC
Q 036775 72 YDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAY---------KDMISWSTVISGLAMNGC-GRQALQLFSLMIING 139 (293)
Q Consensus 72 ~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g 139 (293)
.+..++..+ .+.++.-....+.+.....+++.+.. .+-..|..++.+.+.... --.+..+|+-|++.+
T Consensus 31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~ 110 (145)
T PF13762_consen 31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND 110 (145)
T ss_pred cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence 345554433 36777777777777777777776642 255678888888866555 445677888888777
Q ss_pred CCCcHhHHHHHHHHHhcCCC
Q 036775 140 VFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 140 ~~p~~~~~~~ll~~~~~~~~ 159 (293)
.+++..-|..++.++.+...
T Consensus 111 ~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 88888888888887766533
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.52 E-value=0.69 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
.+|..+-..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577778888889999999999888776
No 317
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=90.43 E-value=2.5 Score=28.54 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 036775 125 GRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIR 204 (293)
Q Consensus 125 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 204 (293)
--+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+ +.+....|-.++ ++..-+++
T Consensus 65 ~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~ 133 (149)
T KOG4077|consen 65 GWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLN 133 (149)
T ss_pred HHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHH
Confidence 3456677777888889999999999999999999999999999999863 334444566554 45556666
Q ss_pred hCCC
Q 036775 205 EMPI 208 (293)
Q Consensus 205 ~~~~ 208 (293)
++|+
T Consensus 134 ELGI 137 (149)
T KOG4077|consen 134 ELGI 137 (149)
T ss_pred HhCC
Confidence 6653
No 318
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.42 E-value=11 Score=32.47 Aligned_cols=177 Identities=7% Similarity=-0.003 Sum_probs=113.0
Q ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 75 SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
+.|.....+++..+..+..+.-.+.+-.+|.+- +-..|..++++|..+ ..+.-..+++++.+..+. |++.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 445555567777887777777777777777653 556778888888887 557777888888776553 4444444444
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcc------hhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHHHHHHH
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQ------TQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNAC 222 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~ 222 (293)
.|-+ ++.+.+..+|..... .+-|. ...|..+...- ..+.+...++...+ +...-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 777888888877764 22231 12444443211 34566666666555 3333344555566668
Q ss_pred HhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhc
Q 036775 223 RIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAG 258 (293)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~ 258 (293)
....++.++.+++..+.+.+..+...-..++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 888888888888888888776676666666655544
No 319
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.68 E-value=12 Score=31.98 Aligned_cols=243 Identities=11% Similarity=0.034 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC------cchHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHHHcCCHH
Q 036775 23 EEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS------ALSFGQYVHSYISTRYDLSVS-NLVGNAVINMYVKCGDVG 95 (293)
Q Consensus 23 ~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 95 (293)
+....+|++..+ .-|+...|...|..|...- .+.....+++...+..+..+. ...|..+.-.++......
T Consensus 299 s~~~~v~ee~v~---~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 299 SRCCAVYEEAVK---TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 345567777766 5677888888787765432 344445566666554444443 345666666666665543
Q ss_pred -HHHHHHHHhhhCCcccHHHHHHHHHhcC-CHHH-HHHHHHHHHhCCCCCcHhHHHHHH-HHHhcCCChhHHHHHHHHhh
Q 036775 96 -IAIQVFNMLAYKDMISWSTVISGLAMNG-CGRQ-ALQLFSLMIINGVFPDDVTFIALI-SACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 96 -~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~-a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~ 171 (293)
-|..+....-..+...|-.-++...+.. +++- -.++|......-..+....|++.. ....+....+.. +....
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~I---i~a~~ 452 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLI---ISALL 452 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHH---HHHHH
Confidence 3444444555556666666666555332 2222 223334444332333334444444 001111112222 22333
Q ss_pred hhcCCCcchhHH-HHHHHHHHhcCChHHHHHHHHhCC-C-CchHhHHHHHHHHH--HhcCChhhchHHHHHHHhhcCCch
Q 036775 172 TVYEIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREMP-I-EAEWSVWGALLNAC--RIHRNDEMFDPIRQELVNKKGVSV 246 (293)
Q Consensus 172 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~-~-~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~ 246 (293)
. -..|+..++ +.+++-+.+.|-..+|..++..+. . .|+...|..++..- ...-+...+..+++.+......++
T Consensus 453 s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 S--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred H--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 2 223555444 568888889999999999999882 2 34666777777662 222337788888988888877888
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..|...+.--...|+.+.+-.++-+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 888888888788999888888765543
No 320
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=89.35 E-value=10 Score=30.65 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCC----CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHH
Q 036775 126 RQALQLFSLMIINGV----FPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEA 201 (293)
Q Consensus 126 ~~a~~~~~~m~~~g~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 201 (293)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... ..+...-..++.+++...+.+...+
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 445555555554311 22333344444444555554444444444332 1233444455555555555555555
Q ss_pred HHHhC
Q 036775 202 FIREM 206 (293)
Q Consensus 202 ~~~~~ 206 (293)
+++..
T Consensus 223 ~l~~~ 227 (324)
T PF11838_consen 223 LLDLL 227 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 321
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.33 E-value=3.2 Score=31.24 Aligned_cols=57 Identities=16% Similarity=0.018 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHh
Q 036775 113 STVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAM 170 (293)
Q Consensus 113 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 170 (293)
+.-++.+.+.+..++|+....+=.+.++. |..+-..++..+|-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33445555556666666655554444322 4444445555556666666655544443
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.31 E-value=13 Score=31.74 Aligned_cols=90 Identities=13% Similarity=0.012 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhc
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRA 193 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 193 (293)
.....+...|+++.+.+.+...... +.....+..++++...+.|+++.|..+-+.|.. ..+ -+.++...-...--..
T Consensus 328 l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~-~ei-e~~ei~~iaa~sa~~l 404 (831)
T PRK15180 328 LRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS-NEI-EDEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc-ccc-CChhheeeecccHHHH
Confidence 3334455667777777777665433 333556777777777777777777777777765 232 2222222222223345
Q ss_pred CChHHHHHHHHhC
Q 036775 194 GLLEEAEAFIREM 206 (293)
Q Consensus 194 g~~~~a~~~~~~~ 206 (293)
|-++++.-.|++.
T Consensus 405 ~~~d~~~~~wk~~ 417 (831)
T PRK15180 405 QLFDKSYHYWKRV 417 (831)
T ss_pred hHHHHHHHHHHHH
Confidence 6677777777766
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.30 E-value=4.3 Score=30.09 Aligned_cols=74 Identities=12% Similarity=-0.107 Sum_probs=49.8
Q ss_pred cccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-------CCcccHHHHHHHHHhcCCH
Q 036775 53 SSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-------KDMISWSTVISGLAMNGCG 125 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~ 125 (293)
.+.|+ +.|.+.|-++.. .+.-.++.....|...|. ..+.+++..++.+..+ .|+..+.+|+..+.+.|+.
T Consensus 118 sr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34444 456666666655 444455666566665555 5678888888877653 3677888888888888888
Q ss_pred HHHH
Q 036775 126 RQAL 129 (293)
Q Consensus 126 ~~a~ 129 (293)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 324
>PRK09687 putative lyase; Provisional
Probab=89.15 E-value=9.8 Score=30.20 Aligned_cols=218 Identities=8% Similarity=-0.006 Sum_probs=127.4
Q ss_pred CchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCH----HHHHHHHHHh--hhCCcccH
Q 036775 39 EPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDV----GIAIQVFNML--AYKDMISW 112 (293)
Q Consensus 39 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~ 112 (293)
.+|.......+.++...|..+....+ ..+.+ .++...-...+.+++..|+. +++...+..+ .+++..+-
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l-~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLA-IELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHH-HHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHH
Confidence 35555666666667666653333333 33322 34556666777777877763 4677777766 34555566
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH
Q 036775 113 STVISGLAMNGCG-----RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV 187 (293)
Q Consensus 113 ~~li~~~~~~~~~-----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 187 (293)
...+.+++..+.. ..+.+.+..... .++..+-...+.++.+.++ +.+...+-.+.+ .++..+-..-+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHHH
Confidence 6666666655421 233444433332 2355566677777777776 456666666654 24444555555
Q ss_pred HHHHhcC-ChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHH
Q 036775 188 DMYGRAG-LLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDAN 266 (293)
Q Consensus 188 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 266 (293)
.++.+.+ ..+.+...+..+-..++...-...+.++.+.|+......+.+.+.. . + .....+.++...|.. +|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~-~--~--~~~~a~~ALg~ig~~-~a~ 254 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKK-G--T--VGDLIIEAAGELGDK-TLL 254 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcC-C--c--hHHHHHHHHHhcCCH-hHH
Confidence 5665543 2445666665553356666677777778788776555555555433 1 1 345677888888885 688
Q ss_pred HHHHHHHHc
Q 036775 267 KIRDEIRRM 275 (293)
Q Consensus 267 ~~~~~m~~~ 275 (293)
..+..+.+.
T Consensus 255 p~L~~l~~~ 263 (280)
T PRK09687 255 PVLDTLLYK 263 (280)
T ss_pred HHHHHHHhh
Confidence 888877763
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.90 E-value=0.87 Score=24.40 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 251 LMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46788999999999999999888644
No 326
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.87 E-value=1.3 Score=21.69 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 247 GTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 247 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788889999999999999988765
No 327
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.59 E-value=22 Score=33.55 Aligned_cols=256 Identities=8% Similarity=0.037 Sum_probs=135.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHH-------HHHHhcccCc---chHHHHHHHHHHhhcCCCCchhHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVN-------VLSACSSISA---LSFGQYVHSYISTRYDLSVSNLVG 81 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~-------ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~ 81 (293)
+=+++...+.++.|+..|.++..+ .+--...|-+ ++.-....|+ +++|..-|+.+ ++-+.-+.-|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 555 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRES--FPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL---HGGVGAPLEY 555 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhc--CCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh---cCCCCCchHH
Confidence 346777788889999988888665 2222233332 2222333444 45555555555 4444444555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhC-------------------------CcccHHHHHHHHHh---cCCHHHHHHHHH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYK-------------------------DMISWSTVISGLAM---NGCGRQALQLFS 133 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------------~~~~~~~li~~~~~---~~~~~~a~~~~~ 133 (293)
..-...|.+.|++++-.+.+.-..++ ...+|--++-+... .-...+-..+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLE 635 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 55566788888888877777655432 11122222222211 111222233333
Q ss_pred HHHhCC------------------------------------------CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 134 LMIING------------------------------------------VFPDDVTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 134 ~m~~~g------------------------------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
.+...- ..+|-.+........+..|.++-+.+..+.+.
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (932)
T PRK13184 636 ILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILA 715 (932)
T ss_pred HHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 332210 01233333344444577888888877777666
Q ss_pred hhc---CCCcch--------hHHHHHHHHHHhcCChHHHHHHHHhCCCCchHh--HHHHHHHHHHhcCChhhchHHHHHH
Q 036775 172 TVY---EIVPQT--------QHYACVVDMYGRAGLLEEAEAFIREMPIEAEWS--VWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 172 ~~~---~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
+.. ..+-+. ..|-.=+.++.....++++...+.... |... .+..++.-+...++.+....+.+.+
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (932)
T PRK13184 716 EVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTD--PTLILYAFDLFAIQALLDEEGESIIQLLQLI 793 (932)
T ss_pred HHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCC--HHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 411 111111 112222445555566777776555553 3333 3444444456667777777777666
Q ss_pred HhhcCCch---hhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 239 VNKKGVSV---GTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 239 ~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
.....+.. ......|.+|.-..++++|-++++....
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (932)
T PRK13184 794 YDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPL 832 (932)
T ss_pred HhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCCh
Confidence 66553332 2345567888888999999999876433
No 328
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.51 E-value=10 Score=29.84 Aligned_cols=83 Identities=7% Similarity=-0.133 Sum_probs=42.8
Q ss_pred HHHHHHcCCHHHHHHHHHHhh-hC---CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-----
Q 036775 85 INMYVKCGDVGIAIQVFNMLA-YK---DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS----- 155 (293)
Q Consensus 85 ~~~~~~~~~~~~A~~~~~~~~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----- 155 (293)
|.+++..+++.+++.+.-+.- .| ...+...-|-.|.+.+.+..+.++-.......-.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666655443221 11 333444455556666666666666665554322223334555555443
Q ss_pred cCCChhHHHHHH
Q 036775 156 HGGLVDQGLILF 167 (293)
Q Consensus 156 ~~~~~~~a~~~~ 167 (293)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666555
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.10 E-value=8.8 Score=28.37 Aligned_cols=88 Identities=6% Similarity=-0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC-Cccc-----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK-DMIS-----WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSH 156 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 156 (293)
.+...+..++++++|+..++..... .-.. --.|.+.....|.+|+|+.+++.....+.. ......--..+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3456677788888888888776632 1122 223455667788888888888876654332 2223334456778
Q ss_pred CCChhHHHHHHHHhhh
Q 036775 157 GGLVDQGLILFKAMST 172 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~ 172 (293)
.|+-++|..-|+...+
T Consensus 172 kg~k~~Ar~ay~kAl~ 187 (207)
T COG2976 172 KGDKQEARAAYEKALE 187 (207)
T ss_pred cCchHHHHHHHHHHHH
Confidence 8888888888888876
No 330
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.00 E-value=8.9 Score=30.10 Aligned_cols=87 Identities=14% Similarity=0.014 Sum_probs=53.8
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHH-HhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCcccHHHHHHH
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYI-STRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY----KDMISWSTVISG 118 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~ 118 (293)
....=|.+++..++|.++....-+- ..-..+||.+ ...-|-.|++.++...+.++-..-.+ .+...|..++..
T Consensus 85 LcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaEL 162 (309)
T PF07163_consen 85 LCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAEL 162 (309)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHH
Confidence 3444567788888888876543333 2212334433 34556668888888777766655442 245557777666
Q ss_pred HHh-----cCCHHHHHHHH
Q 036775 119 LAM-----NGCGRQALQLF 132 (293)
Q Consensus 119 ~~~-----~~~~~~a~~~~ 132 (293)
|.. .|.+++|+++.
T Consensus 163 yLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 163 YLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHhccccHHHHHHHH
Confidence 654 68888888877
No 331
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.52 E-value=3.7 Score=27.81 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 036775 62 QYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
.+-+..... ..+-|++.+....+.++-+.+|+..|.++|+-++.
T Consensus 69 rkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444 56666666666667777777777777777766653
No 332
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=87.04 E-value=4.2 Score=30.20 Aligned_cols=101 Identities=6% Similarity=-0.055 Sum_probs=70.3
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcch-----hHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhc
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQT-----QHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIH 225 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~ 225 (293)
-+.+.|++++|..-|..... -+++.. ..|..-..++.+.+.++.|+.--... .+.|+.. ....-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 36789999999999999886 344432 34555566788889998887765554 5555432 222234458888
Q ss_pred CChhhchHHHHHHHhhcCCchhhHHHHHHH
Q 036775 226 RNDEMFDPIRQELVNKKGVSVGTFALMSNT 255 (293)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~li~~ 255 (293)
..++.|..-|+++.+..|.....-...++.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999888766555444443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.47 E-value=3 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcc
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTK 36 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~ 36 (293)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35678888888888888888887654
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.29 E-value=9.4 Score=26.83 Aligned_cols=50 Identities=10% Similarity=-0.075 Sum_probs=24.0
Q ss_pred cCcchHHHHHHHHHHhhcCCCCchhH-HHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 55 ISALSFGQYVHSYISTRYDLSVSNLV-GNAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 55 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
.++.+.+..+++.+.- +.|+..- -..-.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 4555555555555543 2222211 122223345556666666666666544
No 335
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.12 E-value=1.5 Score=21.12 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKT 35 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~ 35 (293)
.+..++.+.|++++|.+.|+++.+.
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455666777888888888877664
No 336
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.94 E-value=12 Score=27.96 Aligned_cols=85 Identities=12% Similarity=0.029 Sum_probs=38.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCc----HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcc-hhHHHHHHHHHHhc
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPD----DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQ-TQHYACVVDMYGRA 193 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 193 (293)
+..+|++++|..-|.+....-.... ...|..-..++.+.+.++.|+.--...++ . .|+ ......-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie-l--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE-L--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh-c--CchhHHHHHHHHHHHHhh
Confidence 3445555555555555544321111 12233333344555555555554444443 1 121 12222233455555
Q ss_pred CChHHHHHHHHhC
Q 036775 194 GLLEEAEAFIREM 206 (293)
Q Consensus 194 g~~~~a~~~~~~~ 206 (293)
.++++|+.-|+.+
T Consensus 182 ek~eealeDyKki 194 (271)
T KOG4234|consen 182 EKYEEALEDYKKI 194 (271)
T ss_pred hhHHHHHHHHHHH
Confidence 6666666655555
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.91 E-value=3.2 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=30.0
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcch-hHHHHHHHHHHhcCChHHHHHH
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQT-QHYACVVDMYGRAGLLEEAEAF 202 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 202 (293)
..++.++|+..|+...+...-+++. .++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777776632223332 3566677777777777776654
No 338
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.83 E-value=17 Score=29.22 Aligned_cols=46 Identities=11% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCCcHhHHHHHHHHHhc--CC----ChhHHHHHHHHhhh
Q 036775 127 QALQLFSLMIINGVFPDDVTFIALISACSH--GG----LVDQGLILFKAMST 172 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~ 172 (293)
+.+.+++.|++.|.+-+..+|.+....... .. ....+..+|+.|++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk 131 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKK 131 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 344555556666665555555443322222 11 13345556666655
No 339
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.76 E-value=4.3 Score=30.08 Aligned_cols=51 Identities=12% Similarity=-0.009 Sum_probs=31.2
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
...+.+......+...+.....|+..+|..++..+...|+.++|.++.+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444443345677777777777777777777777777666
No 340
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=85.48 E-value=6.3 Score=29.19 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=17.3
Q ss_pred CCcccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 107 KDMISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 107 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
|+..+|..++.++...|+.++|.+...++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555555555555555555555555555544
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.35 E-value=2.2 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEK 34 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~ 34 (293)
..|..+...+...|+++.|...|....+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3566777788888888888888887765
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.32 E-value=26 Score=31.03 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHccCCCchHHHHHHHHHH-hcccCcchHHHHHHHHHHhh---cCCCCchhHHHHHHHHHHHcC-----
Q 036775 22 CEEAVSVFQEMEKTKEAEPNEATLVNVLSA-CSSISALSFGQYVHSYISTR---YDLSVSNLVGNAVINMYVKCG----- 92 (293)
Q Consensus 22 ~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~----- 92 (293)
...|.+.++...+.|...+-...=...... .....+.+.|...++.+.+. .-..-.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 467888888887776333332222223333 55777889998888887551 011113334566777777743
Q ss_pred CHHHHHHHHHHhhhC-CcccHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh--cCCChhHHHHH
Q 036775 93 DVGIAIQVFNMLAYK-DMISWSTVISGLAMN---GCGRQALQLFSLMIINGVFPDDVTFIALISACS--HGGLVDQGLIL 166 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~ 166 (293)
+.+.|..++.+.-+. +...--.+...+... .+...|.++|....+.|.. ...-+..++.... -..+.+.|..+
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 567799988877654 333333333333332 3678999999999888864 3333333333222 34577888888
Q ss_pred HHHhhhhcC
Q 036775 167 FKAMSTVYE 175 (293)
Q Consensus 167 ~~~~~~~~~ 175 (293)
+++..+ .|
T Consensus 387 ~k~aA~-~g 394 (552)
T KOG1550|consen 387 YKKAAE-KG 394 (552)
T ss_pred HHHHHH-cc
Confidence 888887 45
No 343
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.29 E-value=26 Score=31.02 Aligned_cols=179 Identities=11% Similarity=-0.057 Sum_probs=105.3
Q ss_pred chHHHHHHHHHHhhcCCCCchhHHHHHHHH-HHHcCCHHHHHHHHHHhhh-------C-CcccHHHHHHHHHhcC-----
Q 036775 58 LSFGQYVHSYISTRYDLSVSNLVGNAVINM-YVKCGDVGIAIQVFNMLAY-------K-DMISWSTVISGLAMNG----- 123 (293)
Q Consensus 58 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~-------~-~~~~~~~li~~~~~~~----- 123 (293)
...+.+.++...+.....+-...-.....+ +....+.+.|..+|+.+.+ . ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 456788888877722222222222333334 5566799999999998865 2 4556777888887754
Q ss_pred CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhc-CCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHH----hcCChHH
Q 036775 124 CGRQALQLFSLMIINGVFPDDVTFIALISACSH-GGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYG----RAGLLEE 198 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~ 198 (293)
+.+.|+.++....+.|.+ +.......+.-... ..+...|.++|..... .|. +... -.+..+|. ...+.+.
T Consensus 308 d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~-~~A~--~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGH-ILAI--YRLALCYELGLGVERNLEL 382 (552)
T ss_pred cHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCC-hHHH--HHHHHHHHhCCCcCCCHHH
Confidence 667799999999888764 65555444443333 3567899999999886 453 3332 22333332 2356788
Q ss_pred HHHHHHhCC--CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhc
Q 036775 199 AEAFIREMP--IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 199 a~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
|..++++.- ..|....-...+..+.. +....+...+....+..
T Consensus 383 A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 383 AFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 888888871 12222222222222333 55555555554444433
No 344
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.49 E-value=20 Score=28.89 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=66.7
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHH
Q 036775 108 DMISWSTVISGLAMNGCGRQALQLFSLMIING---VFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYA 184 (293)
Q Consensus 108 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 184 (293)
...+-..++..-....+++.+...+-+++... ..|+. +-.+.+..| -.-+.++++.++..=++ +|+-||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcch-hccccchhhHH
Confidence 34455566666666778888888888776431 22222 122223322 33466788888888887 89999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+|+.+.+.+++.+|.++.-.|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999988887666
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.25 E-value=19 Score=28.59 Aligned_cols=173 Identities=14% Similarity=0.041 Sum_probs=105.1
Q ss_pred CcccHHHHHHHHHh------cC-----CHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhh-----
Q 036775 108 DMISWSTVISGLAM------NG-----CGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMS----- 171 (293)
Q Consensus 108 ~~~~~~~li~~~~~------~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----- 171 (293)
...+|...+.++.. .| -..+|+++|.-+.+..-+ +.+-..++.++-...+..+|...+....
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 34456666666551 22 146788888887765322 2333445555555555555554433221
Q ss_pred --h------------------hcCCCcchhHHHHHHHHHHh-cCChHHHHHHHHhC-C-CCc-------------hHhHH
Q 036775 172 --T------------------VYEIVPQTQHYACVVDMYGR-AGLLEEAEAFIREM-P-IEA-------------EWSVW 215 (293)
Q Consensus 172 --~------------------~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~-~-~~~-------------~~~~~ 215 (293)
. ..+...|..-|-..+....+ ...++++.++.... + .-| -..+|
T Consensus 199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly 278 (361)
T COG3947 199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence 1 01223345455555544333 34466777666655 1 000 11233
Q ss_pred HH----HHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH-----HcCCCCCCc
Q 036775 216 GA----LLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR-----RMGLKKKTG 282 (293)
Q Consensus 216 ~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~ 282 (293)
.. ....|...|.+.+|..+.++....+|.+...+-.|+..+...|+--.+.+-++.+. +.|+.-+..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 33 34558999999999999999999999999999999999999999777777766653 246665544
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.64 E-value=13 Score=26.18 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=8.5
Q ss_pred HHhcCChHHHHHHHHhC
Q 036775 190 YGRAGLLEEAEAFIREM 206 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~ 206 (293)
+...|++++|.++|++.
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34445555555555554
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.96 E-value=11 Score=28.51 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhh-cCCCCchhHHHHHHHH
Q 036775 9 WTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTR-YDLSVSNLVGNAVINM 87 (293)
Q Consensus 9 y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 87 (293)
-+..++.+.+.++..+++....+=.+. .+.|...-..++..++-.|++++|..-++-..+. ....+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345566677777777777776665554 2444445556667777777777776655554330 1222334445555543
No 348
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=82.94 E-value=4.2 Score=32.86 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHccCCCc-hHHHHHHHHHHhcccCcchHHHHHHHHH
Q 036775 15 GYAERGFCEEAVSVFQEMEKTKEAEP-NEATLVNVLSACSSISALSFGQYVHSYI 68 (293)
Q Consensus 15 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 68 (293)
.|.+.|.+++|+..|..... ..| |++++..-..+|.+...+..|+.-....
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 46777888888888877666 334 7777777777777777776665544443
No 349
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.84 E-value=5.9 Score=21.64 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=22.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777777666666554
No 350
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.46 E-value=4.9 Score=24.67 Aligned_cols=45 Identities=7% Similarity=0.006 Sum_probs=20.5
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchH-HHHHHHHHHhcccCcchHHH
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNE-ATLVNVLSACSSISALSFGQ 62 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~ 62 (293)
...+.++|+..|....+.-.-+|+. .++..++.+++..|.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554432112221 13444455555555554443
No 351
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.30 E-value=26 Score=28.63 Aligned_cols=187 Identities=11% Similarity=0.024 Sum_probs=90.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC---CchhHHHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLS---VSNLVGNAVINMY 88 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 88 (293)
...+.-+.|+|+...+....... ..++...+..+... ..++.+++....+.+.....-. .....|.......
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~---~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l 78 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNE---DSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSL 78 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccC---CChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34667778888885555554433 23444555544444 7777888777777766521110 1112222222222
Q ss_pred HHc---CCHHHHHHHHHHhhhC------CcccHHHHHHHHHhcCCH---HHHHHHHHHHHh--CCCCCcHhHHHHHHHHH
Q 036775 89 VKC---GDVGIAIQVFNMLAYK------DMISWSTVISGLAMNGCG---RQALQLFSLMII--NGVFPDDVTFIALISAC 154 (293)
Q Consensus 89 ~~~---~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~---~~a~~~~~~m~~--~g~~p~~~~~~~ll~~~ 154 (293)
.+. .+++++.++....... =...|..-+... ..++ +..+.+=..+.. ........++..+...+
T Consensus 79 ~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~--~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~a 156 (352)
T PF02259_consen 79 VKLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNM--QDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLA 156 (352)
T ss_pred HHHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 222 3334444433211100 001122111111 1111 111111111111 11233456777888888
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCc---chhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVP---QTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+.|.++.|...+..+.. .+... .+.+...-.+.+...|+..+|+..++..
T Consensus 157 Rk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888888887765 22111 2334445566677778877877776554
No 352
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=82.26 E-value=18 Score=26.76 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHhC-----CCCchHhHHHHHHH-HHHhcCC--hhhchHHHHHHHhhcCCchh-------hH-
Q 036775 186 VVDMYGRAGLLEEAEAFIREM-----PIEAEWSVWGALLN-ACRIHRN--DEMFDPIRQELVNKKGVSVG-------TF- 249 (293)
Q Consensus 186 l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~l~~-~~~~~~~--~~~a~~~~~~~~~~~~~~~~-------~~- 249 (293)
.+-.....|++++|.+-++++ .++.-...|..+.. +++.++. +-+|..++.-+.....|++. .|
T Consensus 35 ~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~Yi 114 (204)
T COG2178 35 EAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYI 114 (204)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHH
Confidence 333445566677777766666 12222223444444 2444333 34555555555554433322 22
Q ss_pred ----------HHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 250 ----------ALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 250 ----------~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
....--..+.|++++|.+.++-|.+
T Consensus 115 lGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 115 LGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1112223467899999998887754
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.54 E-value=12 Score=24.31 Aligned_cols=87 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
..++|..+-+.+.. .+.. ...+--+-+..+.+.|++++|..+.+...-||...|.+|-. .+.|..+++..-+.+|.
T Consensus 20 cHqEA~tIAdwL~~-~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHL-KGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhc-CCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 34555555555544 1211 22222333445667777777777777776677777766543 45666666666666666
Q ss_pred hCCCCCcHhHHH
Q 036775 137 INGVFPDDVTFI 148 (293)
Q Consensus 137 ~~g~~p~~~~~~ 148 (293)
..|- |...+|.
T Consensus 96 ~sg~-p~lq~Fa 106 (115)
T TIGR02508 96 ASGD-PRLQTFV 106 (115)
T ss_pred hCCC-HHHHHHH
Confidence 6553 3444443
No 354
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=81.47 E-value=25 Score=27.91 Aligned_cols=68 Identities=7% Similarity=0.004 Sum_probs=41.4
Q ss_pred CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 139 GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 139 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
|-.++..+...++..+++.+++..-.++++......+..-|...|..+++.-...|+..-...+.++-
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 34456666666666666666666666666666542234445566666666666666666666665543
No 355
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.88 E-value=15 Score=25.05 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHH
Q 036775 60 FGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFN 102 (293)
Q Consensus 60 ~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (293)
.+.++|..|.. .|+-. -...|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555 33332 23334455555555555555555554
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.52 E-value=38 Score=29.40 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 036775 7 VSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVIN 86 (293)
Q Consensus 7 ~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (293)
...-+++..+..+-.+.-+..+..+|..-| -+-..|..++.+|... .-+.-..+++++.+ ..+ .|...-..|..
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve-~df-nDvv~~ReLa~ 140 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVE-YDF-NDVVIGRELAD 140 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHH-hcc-hhHHHHHHHHH
Confidence 334455566666666666666666666632 4455556666666655 44455556665555 222 22222233444
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCc---------ccHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCcHhHHHHHHHHHhc
Q 036775 87 MYVKCGDVGIAIQVFNMLAYKDM---------ISWSTVISGLAMNGCGRQALQLFSLMII-NGVFPDDVTFIALISACSH 156 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~ 156 (293)
.|-+ ++.+++...|.++..+=+ ..|..+...- ..+.+..+.+...+.. .|...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 666666666665543211 1444444321 2445555555555543 2333344555566666777
Q ss_pred CCChhHHHHHHHHhhh
Q 036775 157 GGLVDQGLILFKAMST 172 (293)
Q Consensus 157 ~~~~~~a~~~~~~~~~ 172 (293)
..++++|++++....+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 7788888888876654
No 357
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=80.51 E-value=12 Score=23.57 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 036775 123 GCGRQALQLFSLMI 136 (293)
Q Consensus 123 ~~~~~a~~~~~~m~ 136 (293)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.51 E-value=32 Score=28.96 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=69.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHH--HHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHH
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEAT--LVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMY 88 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 88 (293)
+...+..|+.+.+..++ +.| ..|+... -.+.+..++..|+.+-+.-++ + .|..|+.. .....+...
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g-~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll----~-~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIG-INPNFEIYDGISPIKLAMKFRDSEAIKLLM----K-HGAIPDVKYPDIESELHDA 75 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHH----h-CCCCccccCCCcccHHHHH
Confidence 33445567765554443 455 6666432 334455556667665444333 3 35444332 112345566
Q ss_pred HHcCCHHHHHHHHHHhhhC----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhH--HHHHHHHHhcCCChhH
Q 036775 89 VKCGDVGIAIQVFNMLAYK----DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVT--FIALISACSHGGLVDQ 162 (293)
Q Consensus 89 ~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~ 162 (293)
+..|+.+.+..+++.-... +....+ .+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 6778888877777654321 111222 333344556653 4444455565554321 1123334445666655
Q ss_pred HHHHHH
Q 036775 163 GLILFK 168 (293)
Q Consensus 163 a~~~~~ 168 (293)
+..+++
T Consensus 151 v~~Ll~ 156 (413)
T PHA02875 151 IELLID 156 (413)
T ss_pred HHHHHh
Confidence 544443
No 359
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.38 E-value=14 Score=24.40 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMII 137 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 137 (293)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577777777777888888888777765
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.22 E-value=44 Score=30.04 Aligned_cols=192 Identities=10% Similarity=0.033 Sum_probs=109.0
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchh--HHHHHHHHHH-HcCCHHHHHHHHHHhhhC----Cc-
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNL--VGNAVINMYV-KCGDVGIAIQVFNMLAYK----DM- 109 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~-~~~~~~~A~~~~~~~~~~----~~- 109 (293)
.+.+...|..+|.. |.+.++.+.+....+|... ++..+...+. ...+++.|+..+++.... +.
T Consensus 26 ~~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 26 SEEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred ChhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34566677777754 4556666664355555443 3455566555 567889999888876532 11
Q ss_pred ----ccHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCcHhHHHHH-HHHHhcCCChhHHHHHHHHhhhhcC--CCc
Q 036775 110 ----ISWSTVISGLAMNGCGRQALQLFSLMIIN----GVFPDDVTFIAL-ISACSHGGLVDQGLILFKAMSTVYE--IVP 178 (293)
Q Consensus 110 ----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~--~~~ 178 (293)
.+-..++..+.+.+... |...+++..+. +..+-...|.-+ +..+...++...|.+.++.+..... ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 12234556666666555 88888776542 222333444444 3333334788888888888776432 233
Q ss_pred chhHHHHHHHHHH--hcCChHHHHHHHHhC-----C-------CCchHhHHHHHHHH--HHhcCChhhchHHHHHHH
Q 036775 179 QTQHYACVVDMYG--RAGLLEEAEAFIREM-----P-------IEAEWSVWGALLNA--CRIHRNDEMFDPIRQELV 239 (293)
Q Consensus 179 ~~~~~~~l~~~~~--~~g~~~~a~~~~~~~-----~-------~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 239 (293)
...++..++.+.. +.+..+++.+.++++ + ..|...+|..++.. +...|+.+.+...++.+.
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555443 345455666655544 1 12345566666666 456777666666665554
No 361
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.64 E-value=23 Score=26.33 Aligned_cols=105 Identities=11% Similarity=0.012 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhCC-cccHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHH-----HHHHHhcCCChhHHH
Q 036775 96 IAIQVFNMLAYKD-MISWST-----VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIA-----LISACSHGGLVDQGL 164 (293)
Q Consensus 96 ~A~~~~~~~~~~~-~~~~~~-----li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~ 164 (293)
+.....+++...+ ..+|-. +...+...|++++|..-++..... |....+.. |.+.....|.+|+|.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444445555443 444443 345677789999999999887653 33334443 344567889999999
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..++.... .+. .......-.+.+...|+-++|+.-|+..
T Consensus 147 ~~L~t~~~-~~w--~~~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 147 KTLDTIKE-ESW--AAIVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHhcccc-ccH--HHHHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 99988875 232 2333455678899999999999988876
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.33 E-value=28 Score=27.28 Aligned_cols=159 Identities=16% Similarity=0.030 Sum_probs=79.4
Q ss_pred HcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCcHhHHHHHHHHHhcCCChh-HHH
Q 036775 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQ----LFSLMIINGVFPDDVTFIALISACSHGGLVD-QGL 164 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 164 (293)
+.+++++|.+++..-. ..+.+.|+...|-+ +++-..+.+.++|......++..+.....-+ .-.
T Consensus 2 ~~kky~eAidLL~~Ga-----------~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGA-----------LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHHH-----------HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHHH-----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 4567777777775432 23344555443333 3333344566666665555555554433211 222
Q ss_pred HHHHHhhhh--cC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 165 ILFKAMSTV--YE--IVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 165 ~~~~~~~~~--~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
++.+.+.+- .+ -..++.....+...|.+.|++.+|+.-|-.-. .|+...+..++......|...+.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~~~e~--------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGYPSEA--------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTSS--H---------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcCCcch---------
Confidence 233333220 11 22356777888999999999999998876654 34444443344333333333333
Q ss_pred hcCCchhhH-HHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 241 KKGVSVGTF-ALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 241 ~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
..| ...+--|.-.|+...|...++...+.
T Consensus 141 ------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------DLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 222 22344566677888888888777654
No 363
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.23 E-value=25 Score=26.67 Aligned_cols=182 Identities=10% Similarity=-0.023 Sum_probs=103.9
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcc-cHHHHHH--HHHhcCCHHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSV-SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMI-SWSTVIS--GLAMNGCGRQ 127 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~~~~~~ 127 (293)
|-..|-+..|+-=|.+... +.| -+.+||-|.--+...|+++.|.+.|+...+-|+. -|..+-+ ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 4445555666655665544 444 4567888888888999999999999998876543 3433333 2334688888
Q ss_pred HHHHHHHHHhCCCC-CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC-ChHHHHHHHHh
Q 036775 128 ALQLFSLMIINGVF-PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG-LLEEAEAFIRE 205 (293)
Q Consensus 128 a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~ 205 (293)
|.+-|-..-+.... |=...|.-+.. +.-++.+|..-+.+--+ + .|..-|...+..|.-.. ..+.+.+-...
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a 224 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKA 224 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHh
Confidence 88877776655322 22233333332 34456666554433322 2 34344444333332211 12222222222
Q ss_pred CCCC------chHhHHHHHHHHHHhcCChhhchHHHHHHHhhcC
Q 036775 206 MPIE------AEWSVWGALLNACRIHRNDEMFDPIRQELVNKKG 243 (293)
Q Consensus 206 ~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 243 (293)
.... .-..||--|..-+...|+.++|..+|+.......
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2111 1234677777778899999999999988876543
No 364
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=79.10 E-value=5.4 Score=31.62 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL 150 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 150 (293)
|+..|....+.||+++|+.++++.++.|..--..||..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 567777778888888888888888887776444454433
No 365
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.91 E-value=4.2 Score=24.93 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=16.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCch
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPN 41 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 41 (293)
+++.+.+..-.++|+++++.|.+.|.+.|.
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 444455555556666666666666544433
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=77.58 E-value=12 Score=30.12 Aligned_cols=54 Identities=4% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+..+.|+..+|.+.++.+.++..+..-..+...|+.++....-+.++..++-+.
T Consensus 284 CARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 284 CARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344678888888888777653221111223445677777666666666555444
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.22 E-value=35 Score=27.14 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHH-------HHHHHHHHhcccCcchHHHHHHHHHHh---hcCCCCchhH
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEA-------TLVNVLSACSSISALSFGQYVHSYIST---RYDLSVSNLV 80 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~ 80 (293)
-+.....+.+++++|+..+.+....| ...+.. +..-+...|...|+.....+......+ ...-+....+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg-~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKG-VSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCC-CChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 35566778899999999999998887 655544 344566778888887766555443322 1333445556
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCCCcHh
Q 036775 81 GNAVINMYVKCG-DVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGCGRQALQLFSL----MIINGVFPDDV 145 (293)
Q Consensus 81 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~ 145 (293)
..+|+..+.... .++.-+.+.....+. ....=..++..+.+.|.+.+|+.+.+. +++..-+|+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 677777666553 455555555554431 112234577888999999999876554 44445555443
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.08 E-value=56 Score=29.46 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 56 (293)
++|-.|.+.|++++|.++..+.... .......+...+..+....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCC
Confidence 4677899999999999999666554 5666677888888887653
No 369
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.78 E-value=22 Score=24.22 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=32.3
Q ss_pred hchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHHH
Q 036775 230 MFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 230 ~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 271 (293)
.+..+|+.+...+ ...+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7778888887765 44566788888888899999999988864
No 370
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=74.87 E-value=10 Score=22.03 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHH
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYIS 69 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 69 (293)
|-.-.-.+|.++...|++++|.+....+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333444444555555555555444443
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=74.71 E-value=42 Score=26.82 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhCC--cccHHHHHHHHHhcCCHHHHHHHHHHH-------Hh-------------------CCCCCcHh
Q 036775 94 VGIAIQVFNMLAYKD--MISWSTVISGLAMNGCGRQALQLFSLM-------II-------------------NGVFPDDV 145 (293)
Q Consensus 94 ~~~A~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~-------------------~g~~p~~~ 145 (293)
-.+|+++|.-+.+.. ..+-+.++..+....+..+|...+... .. .++.-|..
T Consensus 149 s~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~ 228 (361)
T COG3947 149 SRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQ 228 (361)
T ss_pred hhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHH
Confidence 367788887776553 555666777777777777666555432 11 12344666
Q ss_pred HHHHHHHHHhcC-CChhHHHHHHHHhhhhcCCCcc-----------------hhHHHHHHHHHHhcCChHHHHHHHHhC-
Q 036775 146 TFIALISACSHG-GLVDQGLILFKAMSTVYEIVPQ-----------------TQHYACVVDMYGRAGLLEEAEAFIREM- 206 (293)
Q Consensus 146 ~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~- 206 (293)
-|...++..... -.++++.++...... +.-|+ ..+++.....|..+|.+.+|.++-++.
T Consensus 229 e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~l 306 (361)
T COG3947 229 EYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRAL 306 (361)
T ss_pred HHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 666666654433 345666666666642 22221 123445557788999999999999988
Q ss_pred CCCc-hHhHHHHHHHHHHhcCChhhchHHHHHHHh
Q 036775 207 PIEA-EWSVWGALLNACRIHRNDEMFDPIRQELVN 240 (293)
Q Consensus 207 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 240 (293)
...| +...|-.|+..+...|+--.+..-++++.+
T Consensus 307 tldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 307 TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4444 566788888889999998888777776654
No 372
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=74.50 E-value=46 Score=27.15 Aligned_cols=81 Identities=12% Similarity=0.107 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh-------CCcccH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCcHhH-
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAY-------KDMISW--STVISGLAMNGCGRQALQLFSLMII-----NGVFPDDVT- 146 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~- 146 (293)
..++...-+.++.++|++.++++.+ |+...| ..+.+++...|+..++.+++++.++ .|++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 4556666677899999999998874 344443 3456677788999999999999887 678876654
Q ss_pred HHHHHHH-HhcCCChhH
Q 036775 147 FIALISA-CSHGGLVDQ 162 (293)
Q Consensus 147 ~~~ll~~-~~~~~~~~~ 162 (293)
|..+-.- |...|++..
T Consensus 159 fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 3333332 334455443
No 373
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.05 E-value=4.3 Score=27.81 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 119 LAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 119 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
.-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457778899999999999999984 66776653
No 374
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=73.73 E-value=5.8 Score=23.09 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=20.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 248 TFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
-.-.+|.++...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345578888888999999888887754
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.43 E-value=33 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 126 RQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 126 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
++|.+.|.+..+ ..|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 444444444444 356666776666654
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.90 E-value=41 Score=25.96 Aligned_cols=88 Identities=13% Similarity=0.125 Sum_probs=45.6
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh----------------hCCcccHHHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA----------------YKDMISWSTV 115 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~~~~~~~~~l 115 (293)
|.+..+..-..++.+-.+. .+++-+..-..+++ +...|+..+|+.-++.-. +|.+.....+
T Consensus 169 ysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~m 245 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKM 245 (333)
T ss_pred hcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHH
Confidence 4444444444444444444 45555555444443 455677777766655432 2333334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPD 143 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 143 (293)
+..| ..+++++|.+++.++-+.|..|.
T Consensus 246 l~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 246 LQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 4433 34566666666666666666543
No 377
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=72.23 E-value=75 Score=28.65 Aligned_cols=179 Identities=8% Similarity=-0.050 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhh-C------CcccHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCcHh-----HHHHHHHHHhcCCChh
Q 036775 95 GIAIQVFNMLAY-K------DMISWSTVISGLA-MNGCGRQALQLFSLMIINGVFPDDV-----TFIALISACSHGGLVD 161 (293)
Q Consensus 95 ~~A~~~~~~~~~-~------~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~ll~~~~~~~~~~ 161 (293)
..|++.++.+.+ . +..++-.+...+. ...+.+.|+..+++....--+++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 344555555542 1 3445666666665 6789999999999875432222221 2234455666666666
Q ss_pred HHHHHHHHhhhhcCCC---cchhHHHHH-HHHHHhcCChHHHHHHHHhC------CCCchHhHHHHHHHHH--HhcCChh
Q 036775 162 QGLILFKAMSTVYEIV---PQTQHYACV-VDMYGRAGLLEEAEAFIREM------PIEAEWSVWGALLNAC--RIHRNDE 229 (293)
Q Consensus 162 ~a~~~~~~~~~~~~~~---~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~------~~~~~~~~~~~l~~~~--~~~~~~~ 229 (293)
|...+++.++...-. +-...+..+ +..+...++...|.+.++.+ ...|....+..++.+. ...+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 999888877633221 112233333 22333347999999999887 2344555666666663 4555566
Q ss_pred hchHHHHHHHhh----------cCCchhhHHHHHHHHh--cCCCHHHHHHHHHHHHH
Q 036775 230 MFDPIRQELVNK----------KGVSVGTFALMSNTFA--GADRWEDANKIRDEIRR 274 (293)
Q Consensus 230 ~a~~~~~~~~~~----------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 274 (293)
.+....+..... .+|...+|..++..++ ..|+++.+...++++.+
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666655321 1345567777766654 67888888888777654
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.97 E-value=8.2 Score=18.17 Aligned_cols=27 Identities=19% Similarity=0.054 Sum_probs=15.1
Q ss_pred ChhhchHHHHHHHhhcCCchhhHHHHH
Q 036775 227 NDEMFDPIRQELVNKKGVSVGTFALMS 253 (293)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~li 253 (293)
+.+.+..+|+++....|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445566666666665555555555444
No 379
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=71.87 E-value=29 Score=24.39 Aligned_cols=45 Identities=9% Similarity=-0.018 Sum_probs=19.3
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 150 LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
++..+.+.++.-.|.++++.+.+ .+...+..|...-++.+...|-
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCC
Confidence 33444444444555555555554 2333333333333344444443
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.47 E-value=26 Score=23.10 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 57 ALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 57 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
..++|..+.+.+.. .+. ....+--+-+..+.+.|++++|+..=.....||...|-+| +-.+.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~-~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQ-EGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAAL--CAWKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHH-TTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh-CCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 34555555555544 121 1222222333444555555555222222223444444333 2244555555555555554
Q ss_pred hC
Q 036775 137 IN 138 (293)
Q Consensus 137 ~~ 138 (293)
..
T Consensus 97 ~~ 98 (116)
T PF09477_consen 97 SS 98 (116)
T ss_dssp T-
T ss_pred hC
Confidence 43
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=71.44 E-value=24 Score=29.61 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhh-----------CCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAY-----------KDMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
..|++.++-.||+..|+++++.+.- -.+.++--+.-+|...+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999887752 145677788888999999999999998864
No 382
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.39 E-value=33 Score=24.13 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHhhhC----CcccHHHHHHHHHhc
Q 036775 80 VGNAVINMYVKCGD-VGIAIQVFNMLAYK----DMISWSTVISGLAMN 122 (293)
Q Consensus 80 ~~~~l~~~~~~~~~-~~~A~~~~~~~~~~----~~~~~~~li~~~~~~ 122 (293)
.|.+++.+.++..- ---+..+|.-+++. +..-|..+|.++.+.
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34555555544333 23334444444432 233355555544443
No 383
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.97 E-value=47 Score=25.85 Aligned_cols=53 Identities=8% Similarity=-0.081 Sum_probs=31.4
Q ss_pred HHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 222 CRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+...|++-+++.....+....|.+...|..-..+.+..-+..+|..=|....+
T Consensus 240 ~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 240 LLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666666666666555554443
No 384
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=70.91 E-value=54 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=14.3
Q ss_pred HhHHHHHHHHHHhcCChhhch
Q 036775 212 WSVWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~ 232 (293)
..+|.-|+.+++..|+.+...
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345777888888888766543
No 385
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.79 E-value=52 Score=26.22 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 036775 185 CVVDMYGRAGLLEEAEAFIR 204 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~ 204 (293)
.++..+.+.|++.+|+.+..
T Consensus 130 Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 130 KLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHHhcccHHHHHHHHH
Confidence 45566666666666665543
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=70.66 E-value=4.8 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred HcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHh
Q 036775 18 ERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC 52 (293)
Q Consensus 18 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~ 52 (293)
..|.-..|..+|.+|.+.| .+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G-~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERG-NPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCC-CCCc--cHHHHHHHh
Confidence 3455567778888888877 6776 355555543
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.70 E-value=36 Score=26.42 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAYK---------DMISWSTVISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 136 (293)
+...+..-|.+.|++++|.++|+.+... ...+...+..++.+.|+.+..+.+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3346677888999999999999888532 23455567778888899888887766654
No 388
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.52 E-value=18 Score=20.31 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHH
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNV 48 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 48 (293)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~---~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE---IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH---HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh---hCCCcHHHHHH
Confidence 34467788888888888888887 56665544433
No 389
>PRK10941 hypothetical protein; Provisional
Probab=69.06 E-value=56 Score=25.86 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
.|-.+|.+.++++.|+.+.+.+..- .+.++.-+..-.-.+.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3334455555555555555555542 122233333344445555555555554444444
No 390
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=68.69 E-value=5.3 Score=23.37 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHccCCCchHH
Q 036775 21 FCEEAVSVFQEMEKTKEAEPNEA 43 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~~~ 43 (293)
+++.|+..|.++...|.++|+..
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhhc
Confidence 68899999999998876777643
No 391
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=68.00 E-value=23 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhh--hCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 036775 94 VGIAIQVFNMLA--YKDMISWSTVISGLAMNGCGRQALQLFSLMIING 139 (293)
Q Consensus 94 ~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 139 (293)
+++|...|++.. +|+...|+.-+... ++|-++..++.+.+
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 455666666554 35555666655544 23445555554443
No 392
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.60 E-value=32 Score=22.47 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=15.4
Q ss_pred HHHHhcCChHHHHHHHHhCCCCchHhHHHHH
Q 036775 188 DMYGRAGLLEEAEAFIREMPIEAEWSVWGAL 218 (293)
Q Consensus 188 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l 218 (293)
..+...|++++|..+.+... .||...|.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~-~pdlepw~AL 76 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC-YPDLEPWLAL 76 (115)
T ss_pred HHHHccchHHHHHHhcCCCC-CchHHHHHHH
Confidence 34455555555555555553 4555544443
No 393
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=67.52 E-value=22 Score=20.69 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhc-----ccCcchHHHHH
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACS-----SISALSFGQYV 64 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~-----~~~~~~~a~~~ 64 (293)
+...|++-+|.++++.+-... ..+....+..+|..++ +.|+.+.|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~-~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAA-PGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHC-CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 556788888999888886543 2345666666666532 44555555443
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.49 E-value=29 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCc----HhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 120 AMNGCGRQALQLFSLMII----NGVFPD----DVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 120 ~~~~~~~~a~~~~~~m~~----~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
.+.|++.+|.+.+.+..+ .+.... ......+.......|+.++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666666554444432 222211 12222233345566777777777776665
No 395
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.34 E-value=80 Score=27.01 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREMPI--EAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (293)
...|+.-|...|...+|.+.+++++. -.....+-+++.+.-+.|+-.....+++.. ......|-+.+-.+|.+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c---f~sglIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC---FKSGLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH---HhcCceeHHHhhhhhhhh
Confidence 45577777788888888888888752 235556777777777777665443333332 333344555555555543
No 396
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=67.08 E-value=32 Score=24.94 Aligned_cols=40 Identities=10% Similarity=0.000 Sum_probs=18.9
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCCh
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLL 196 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 196 (293)
...+.-.|.++++.+.+ .+..++..|...-+..+.+.|-+
T Consensus 37 ~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 37 LQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred hcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCE
Confidence 33444455555555554 34344444433444455555443
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=66.79 E-value=10 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCc
Q 036775 248 TFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTG 282 (293)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 282 (293)
-|+.-|....+.|++++|+++++|.++.|+.--..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~ 293 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARS 293 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHH
Confidence 47789999999999999999999999998864333
No 398
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.58 E-value=48 Score=29.86 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCcHhHHHHHHHHHhcCCCh
Q 036775 114 TVISGLAMNGCGRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
+|..+|..+|++-.+.++++..... |-+.=...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666667666666666666543 2222234555566666666654
No 399
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=66.51 E-value=70 Score=26.05 Aligned_cols=131 Identities=11% Similarity=0.023 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--------Cc
Q 036775 38 AEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--------DM 109 (293)
Q Consensus 38 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~ 109 (293)
+..|...++.+..+ ....+++-.+..+...+..|-..-...+......||+.|+.+.|++.+.+--++ |+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34444444444432 222344444444555543344444556667778888888888888888766554 22
Q ss_pred ccHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCcH----hHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 110 ISWSTVISG-LAMNGCGRQALQLFSLMIINGVFPDD----VTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 110 ~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
..+..-+.. |....-..+-++..+.+.+.|...+. .+|..+- |...+++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 222222211 22222233334444444455544332 3343332 3344577777777766654
No 400
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=1.1e+02 Score=28.81 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=85.2
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 87 MYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
....+|+++.|++.-.++- |..+|..|.....+.|+.+-|+..|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3456788888877665554 455889999999999999999888887653 23333345567788777776
Q ss_pred HHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh
Q 036775 167 FKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK 241 (293)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 241 (293)
.+.... +-|..+ ....-.-.|+.++=..+++..+..|-.. .....+|.-+.|.++.++....
T Consensus 721 ~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~lay------lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLAY------LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHHH------HHHhhcCcHHHHHHHHHhhccc
Confidence 665543 122211 1111223588888888888887544322 1134678888888888877763
No 401
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.04 E-value=64 Score=25.48 Aligned_cols=204 Identities=11% Similarity=0.034 Sum_probs=125.0
Q ss_pred CcchHHHHHHHHHH-HHcCCHHHHHHHHHHHHHccCCCch--HHHHHHHHHHhcccCcchHHHHHHHHHHhh--cCC--C
Q 036775 3 KRDVVSWTTMIGGY-AERGFCEEAVSVFQEMEKTKEAEPN--EATLVNVLSACSSISALSFGQYVHSYISTR--YDL--S 75 (293)
Q Consensus 3 ~p~~~~y~~li~~~-~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~--~ 75 (293)
+||+..=|..-..- .+...+++|+.-|++.....|-..+ -.....++....+.+++++....+.++..- ..+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 46665544433221 2345789999999998774311111 223446778888999999998888887650 112 2
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhh-----CCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAY-----KDM----ISWSTVISGLAMNGCGRQALQLFSLMIINGVF----- 141 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----- 141 (293)
-+....|+++..-+...+.+--.++|+.-.+ ++. .|-+.|...|...+.+.+..++++++.+.-..
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2344557777777766666666555554332 122 24456777888889999999999988653111
Q ss_pred ------CcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHH----HHHHhcCChHHHHH-HHHhC
Q 036775 142 ------PDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVV----DMYGRAGLLEEAEA-FIREM 206 (293)
Q Consensus 142 ------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~-~~~~~ 206 (293)
-=...|..-|..|...++-..-..++++......--|.+.....+- .+..+.|+|++|.. +|+..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1234577777778788888888888887765344445554333222 33556788888754 44443
No 402
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=65.94 E-value=1.2e+02 Score=28.46 Aligned_cols=219 Identities=13% Similarity=-0.027 Sum_probs=119.4
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchh-------HHHHHH-HHHHHcCCHHHHHHHHHHhhhC--------CcccHHHH
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNL-------VGNAVI-NMYVKCGDVGIAIQVFNMLAYK--------DMISWSTV 115 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l 115 (293)
.....++.+|..+..++....+ +|+.. .++.|- ......|++++|.++-+..... .+..+.++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~-~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLK-APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhC-cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4567889999999999887322 22222 223332 2334568899999888777642 55667778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHH---HHH--HHHhcCCChhHH--HHHHHHhhhhc--CCCc---chhHH
Q 036775 116 ISGLAMNGCGRQALQLFSLMIINGVFPDDVTFI---ALI--SACSHGGLVDQG--LILFKAMSTVY--EIVP---QTQHY 183 (293)
Q Consensus 116 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~ll--~~~~~~~~~~~a--~~~~~~~~~~~--~~~~---~~~~~ 183 (293)
..+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|+...+ ...|....... ..+. -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999888776542222333332 222 224566643332 33333332211 1111 12344
Q ss_pred HHHHHHHHhc-CChHHHHHHHHhC-CCCch--Hh--HHHHHHHHHHhcCChhhchHHHHHHHhhc-CC----chhh--HH
Q 036775 184 ACVVDMYGRA-GLLEEAEAFIREM-PIEAE--WS--VWGALLNACRIHRNDEMFDPIRQELVNKK-GV----SVGT--FA 250 (293)
Q Consensus 184 ~~l~~~~~~~-g~~~~a~~~~~~~-~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~----~~~~--~~ 250 (293)
..+..++.+. +...++...++-- ...|. .. .+..|.......|+.++|...+.++.... .+ +..+ +.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555541 1122222222222 11222 22 22356677889999999999998888754 11 1111 12
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 036775 251 LMSNTFAGADRWEDANKIRDE 271 (293)
Q Consensus 251 ~li~~~~~~g~~~~a~~~~~~ 271 (293)
.-...-...|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222233467888888777654
No 403
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.83 E-value=99 Score=27.56 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=39.8
Q ss_pred cCCHHHHHHHHHHhhh--C--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHH
Q 036775 91 CGDVGIAIQVFNMLAY--K--DMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLIL 166 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~--~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 166 (293)
.|+...|.+.+..... | .-+..-.|.+...+.|..-+|-.++.+..... ....-++..+-+++.-..+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4555555555544431 1 22223334444455555555555555544433 22334555555555555566666666
Q ss_pred HHHhhh
Q 036775 167 FKAMST 172 (293)
Q Consensus 167 ~~~~~~ 172 (293)
|++...
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 655543
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.80 E-value=48 Score=25.76 Aligned_cols=77 Identities=16% Similarity=0.021 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhCCc--ccHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCcHhHHHHHHHHHhcCCChhHHHHHH
Q 036775 95 GIAIQVFNMLAYKDM--ISWSTVISGLAMNGCGRQALQLFSLMII----NG-VFPDDVTFIALISACSHGGLVDQGLILF 167 (293)
Q Consensus 95 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 167 (293)
+.|.+.|........ ..--.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 345555554443322 2233567789999999999999999852 23 3445677788888889999999887765
Q ss_pred HHhh
Q 036775 168 KAMS 171 (293)
Q Consensus 168 ~~~~ 171 (293)
-++.
T Consensus 242 leLl 245 (247)
T PF11817_consen 242 LELL 245 (247)
T ss_pred HHHh
Confidence 5543
No 405
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=65.42 E-value=58 Score=24.72 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=19.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 248 TFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 248 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
..-.+.....+.|+.++|.+.|.++...+
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33445566667788888888887776643
No 406
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=65.41 E-value=21 Score=23.66 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCC
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGL 159 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 159 (293)
++..+...+..-.|.++++.+.+.+..++..|.-..+..+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444555566666666655555555555555555555544
No 407
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=65.28 E-value=53 Score=24.22 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhh
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAY 106 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~ 106 (293)
..+-.|.+.|.+++|.+++++..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc
Confidence 345566677777777777766653
No 408
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=64.94 E-value=1.2e+02 Score=28.11 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHh-----------cccCcchHHHHHHHHHHhhcCC
Q 036775 6 VVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSAC-----------SSISALSFGQYVHSYISTRYDL 74 (293)
Q Consensus 6 ~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~-----------~~~~~~~~a~~~~~~~~~~~~~ 74 (293)
......++.++...|+++.|.+++..-... .-+.......++.+. ...|....|.++++-+......
T Consensus 432 ~~~~~~~l~~LL~~~~f~la~~~~~~~~~~--~l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 432 DEIEEIFLEALLSSGRFSLAKSLYEESSSS--PLSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCCcC--CCCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 445667788888888888888888764332 123333444444332 1245666777777766552111
Q ss_pred CCchhHHHHHHHHHHHcCCH
Q 036775 75 SVSNLVGNAVINMYVKCGDV 94 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~~~~ 94 (293)
.+...-...|+.+.....++
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f 529 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEF 529 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHhC
Confidence 22333334555555544443
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.57 E-value=33 Score=21.64 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHH
Q 036775 128 ALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAE 200 (293)
Q Consensus 128 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 200 (293)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+.+ | |+. |...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~r--g--~~a--F~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIVQ--K--EGW--FSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhcc--C--CcH--HHHHHHHHHHcCchhhhh
Confidence 44566666666653 444444444433456777788887777763 2 443 677777777777655443
No 410
>PRK10941 hypothetical protein; Provisional
Probab=64.28 E-value=70 Score=25.30 Aligned_cols=76 Identities=11% Similarity=-0.056 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC----CCCchHhHHHHHHHHH
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM----PIEAEWSVWGALLNAC 222 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~l~~~~ 222 (293)
.+.+-.+|.+.++++.|.++.+.+.. -.+.+..-+.--.-.|.+.|.+..|..=++.. +..|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34456677888888888888888885 22334455666666788888888887755544 5566666666656555
Q ss_pred Hh
Q 036775 223 RI 224 (293)
Q Consensus 223 ~~ 224 (293)
.+
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 411
>PRK09687 putative lyase; Provisional
Probab=64.22 E-value=72 Score=25.40 Aligned_cols=233 Identities=11% Similarity=-0.025 Sum_probs=137.5
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcc----hHHHHHHHHHHhhcCCCCch
Q 036775 3 KRDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL----SFGQYVHSYISTRYDLSVSN 78 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 78 (293)
.+|....-..+.++...|. +++...+..+..+ +|...=...+.+++..|+. .++...+..+.. ..++.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~ 105 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSA 105 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCH
Confidence 3566666667777777775 4444555555432 3444445556666666653 345666655522 35666
Q ss_pred hHHHHHHHHHHHcCC-----HHHHHHHHHH-hhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHH
Q 036775 79 LVGNAVINMYVKCGD-----VGIAIQVFNM-LAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALIS 152 (293)
Q Consensus 79 ~~~~~l~~~~~~~~~-----~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 152 (293)
.+....+.++...+. ...+...+.. +..++..+-...+.++++.++ +++...+-.+.+. +|...-...+.
T Consensus 106 ~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 106 CVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 666666666666542 1233444433 334566677778888888887 4566666666653 45555556666
Q ss_pred HHhcCC-ChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhc
Q 036775 153 ACSHGG-LVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMF 231 (293)
Q Consensus 153 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 231 (293)
++.+.+ .-+.+...+..+.. .++..+-..-+.++.+.|...-.-.+.+.++ .++. ....+.+....|.. .+
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-hH
Confidence 666653 24466666666664 3577777788888998888543334444444 2332 34567777888886 56
Q ss_pred hHHHHHHHhhcCCchhhHHHHHHHH
Q 036775 232 DPIRQELVNKKGVSVGTFALMSNTF 256 (293)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~li~~~ 256 (293)
...+..+.+..+ |..+-...+.++
T Consensus 254 ~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 254 LPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 666666666555 544444444443
No 412
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.04 E-value=37 Score=21.61 Aligned_cols=55 Identities=9% Similarity=-0.002 Sum_probs=27.8
Q ss_pred HHHcCCHHHHHHHHHHHHHccC---CCch--H--HHHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 16 YAERGFCEEAVSVFQEMEKTKE---AEPN--E--ATLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~---~~p~--~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
..+.|++.+|++.+.+.-.... ..+. . .....+...+...|+.++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567888888666555433210 1110 1 1112223335556666666666666555
No 413
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.91 E-value=27 Score=26.97 Aligned_cols=116 Identities=11% Similarity=0.015 Sum_probs=72.6
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchh-HHHHHHHHHHhcCChHHHHHHHHh-CCCCchHhHHHHHH-HHHHhcCChhh
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQ-HYACVVDMYGRAGLLEEAEAFIRE-MPIEAEWSVWGALL-NACRIHRNDEM 230 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~~~~~~~ 230 (293)
|...+.++.|+..|.+.+. +.|+.. -|+.-+.++.+..+++.+..-=.+ ..+.||...-..++ .+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 5566778888887777663 457664 456677788888888887654443 36778777544444 44678888888
Q ss_pred chHHHHHHHhhc-----CCchhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 231 FDPIRQELVNKK-----GVSVGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 231 a~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
+...+.+..... ++-......|..+--..=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888775432 223344555555444444444445544443
No 414
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.62 E-value=94 Score=26.20 Aligned_cols=212 Identities=11% Similarity=0.003 Sum_probs=104.0
Q ss_pred HHHhcccCcchHHHHHHHHHHhhcCCCCchhH--HHHHHHHHHHcCCHHHHHHHHHHhhhCC---cccHHHHHHHHHhcC
Q 036775 49 LSACSSISALSFGQYVHSYISTRYDLSVSNLV--GNAVINMYVKCGDVGIAIQVFNMLAYKD---MISWSTVISGLAMNG 123 (293)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~ 123 (293)
+...+..|+.+.+..+++ .|..++... ..+.+...+..|+.+-+.-+++.-..++ .... ..+...+..|
T Consensus 6 L~~A~~~g~~~iv~~Ll~-----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~-t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLLD-----IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIE-SELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcc-cHHHHHHHCC
Confidence 334455666665555543 466665433 2445666677888887766666544332 2223 3455566788
Q ss_pred CHHHHHHHHHHHHhCCCCCc----HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhH--HHHHHHHHHhcCChH
Q 036775 124 CGRQALQLFSLMIINGVFPD----DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQH--YACVVDMYGRAGLLE 197 (293)
Q Consensus 124 ~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 197 (293)
+.+.+..+++ .|...+ ..-.+ .+...+..|+.+-+ +.+.+ .|..|+... -...+...+..|+.+
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~~~~~iv----~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMT-PLHLATILKKLDIM----KLLIA-RGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCC-HHHHHHHhCCHHHH----HHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 8877665554 333221 11223 33344456665444 34443 455554321 112344455678877
Q ss_pred HHHHHHHhCCCCc---hHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 198 EAEAFIREMPIEA---EWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 198 ~a~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
-+..+++.- ..+ |..-.+ .+......|+.+.+..+++........+..-...++...+..|+.+ +.+-+.+
T Consensus 150 ~v~~Ll~~g-~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~ 223 (413)
T PHA02875 150 GIELLIDHK-ACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIK 223 (413)
T ss_pred HHHHHHhcC-CCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHH
Confidence 666666543 222 222222 2333445666665544443222111111111224444445566654 4455567
Q ss_pred cCCCCCCc
Q 036775 275 MGLKKKTG 282 (293)
Q Consensus 275 ~~~~p~~~ 282 (293)
.|..++..
T Consensus 224 ~gad~n~~ 231 (413)
T PHA02875 224 RGADCNIM 231 (413)
T ss_pred CCcCcchH
Confidence 78877753
No 415
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.59 E-value=2.2e+02 Score=30.33 Aligned_cols=62 Identities=8% Similarity=-0.075 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 036775 212 WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRM 275 (293)
Q Consensus 212 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 275 (293)
..+|....+.....|..+.|...+-...+... +..+.-.+...-..|+...|+.++++-...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34677777778889999988877755555553 456777788888999999999999987754
No 416
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=62.39 E-value=1.5e+02 Score=28.39 Aligned_cols=184 Identities=11% Similarity=-0.029 Sum_probs=92.5
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
++..+-...+..+...+.-+ ...+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHH
Confidence 44444445555555433211 22333444455555555556666555443221 1122 1245555555666666
Q ss_pred cCCChhH-HHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHH
Q 036775 156 HGGLVDQ-GLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPI 234 (293)
Q Consensus 156 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 234 (293)
..+..+. +...+..+.. .++..+-...+.++...|..+.+...+...-..++...-...+.++...+..+....+
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHH
Confidence 6655432 3344444443 3566667777778888877655533333332245555555566666666654433333
Q ss_pred HHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 235 RQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 235 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+ + .++..+-...+.++.+.+....+...+....+
T Consensus 844 ~~~L-~--D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEAL-T--DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHh-c--CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 3332 2 33455566666777665334455555554443
No 417
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.10 E-value=24 Score=19.21 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=21.3
Q ss_pred HHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHH
Q 036775 16 YAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLS 50 (293)
Q Consensus 16 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~ 50 (293)
..+.|-..++..++++|.+.| +.-++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g-~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAG-FRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcC-cccCHHHHHHHHH
Confidence 445566667777777776666 6666666655554
No 418
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=62.07 E-value=99 Score=26.28 Aligned_cols=234 Identities=10% Similarity=-0.053 Sum_probs=123.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcC
Q 036775 13 IGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCG 92 (293)
Q Consensus 13 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 92 (293)
|+++...| ..++..+-..... .++...+.....++....+......+.+.+ ..++..+...+..++...+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~~~~~~~L~~~L-----~d~~~~vr~aaa~ALg~i~ 114 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE---ADEPGRVACAALALLAQEDALDLRSVLAVL-----QAGPEGLCAGIQAALGWLG 114 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCChHHHHHHHHHh-----cCCCHHHHHHHHHHHhcCC
Confidence 66677777 5677766666542 233344444444443333222233333333 2345556788888888888
Q ss_pred CHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 93 DVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 93 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
..+-...+..-....+.......+.++...+. + +...+....+ .+|...-..-+.++...+..+..- .+..+..
T Consensus 115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~-~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~-~L~~al~ 188 (410)
T TIGR02270 115 GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-D-PGPALEAALT---HEDALVRAAALRALGELPRRLSES-TLRLYLR 188 (410)
T ss_pred chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C-hHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchH-HHHHHHc
Confidence 87777666666666666666666677665442 2 3334444443 356666677777777777654333 3344443
Q ss_pred hcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH
Q 036775 173 VYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM 252 (293)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 252 (293)
.+|..+-..-+.+....|. ++|...+......++......+.......|.. .+...+..+.+. ..+-...
T Consensus 189 ----d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~-~a~~~L~~ll~d----~~vr~~a 258 (410)
T TIGR02270 189 ----DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGP-DAQAWLRELLQA----AATRREA 258 (410)
T ss_pred ----CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCch-hHHHHHHHHhcC----hhhHHHH
Confidence 3555556666667777777 66666665532233333333333333333333 333333333332 1144455
Q ss_pred HHHHhcCCCHHHHHHHHHHH
Q 036775 253 SNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~m 272 (293)
+.++.+.|+..-+.-+.+.|
T Consensus 259 ~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 259 LRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHHHcCCcchHHHHHHHh
Confidence 55566666555444444433
No 419
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=76 Score=25.95 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=10.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH
Q 036775 253 SNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 253 i~~~~~~g~~~~a~~~~~~m~~ 274 (293)
...+...|+..++.+.+++.++
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHhcccHHHHHHHHHHHHH
Confidence 3334445555555555555444
No 420
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.89 E-value=1e+02 Score=26.01 Aligned_cols=90 Identities=12% Similarity=0.017 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhh------CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCcH
Q 036775 80 VGNAVINMYVKCGDVGIAIQVFNMLAY------KDMISWSTVISGLAMNGCGRQALQLFSLMIIN---------GVFPDD 144 (293)
Q Consensus 80 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------g~~p~~ 144 (293)
.+.-+...|..+|+++.|++.|-+.+. ..+..|-.+|..-.-.|+|........+..+. .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 456788899999999999999998653 24456777888888889998888888777654 122333
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHhh
Q 036775 145 VTFIALISACSHGGLVDQGLILFKAMS 171 (293)
Q Consensus 145 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 171 (293)
..+..+...+ .+++..|.+.|-...
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 3344443333 336666666655444
No 421
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.85 E-value=96 Score=25.71 Aligned_cols=119 Identities=16% Similarity=0.174 Sum_probs=66.1
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcchhH-------HH-HHHHHHHhcCCh--------HHHHHHHHhCC----------
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQTQH-------YA-CVVDMYGRAGLL--------EEAEAFIREMP---------- 207 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~-~l~~~~~~~g~~--------~~a~~~~~~~~---------- 207 (293)
|...++++.|..+++.... .|.... |- -++-.+.-.|+. .-|.+.++.|.
T Consensus 193 ciglk~fe~Al~~~e~~v~----~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y 268 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT----TPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVY 268 (422)
T ss_pred eeccccHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHHHHHHHH
Confidence 3467899999999998874 243222 22 222233445665 45666666662
Q ss_pred CCchHhHHHHHHHH----HHhcCChhhchHHHHHHHhhc-CCchhhHHHHH----HHHhcCCCHHHHHHHHHHHHHcC
Q 036775 208 IEAEWSVWGALLNA----CRIHRNDEMFDPIRQELVNKK-GVSVGTFALMS----NTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 208 ~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.........+++.. +.+-++..-+......+.+.. ..-..||.+|- .-..+.+..++|.+..-+|.+.|
T Consensus 269 ~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 269 LKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 01111124444444 455566666666666555544 33345665542 22335677788888877777654
No 422
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=60.59 E-value=21 Score=23.97 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=23.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
++..+...+.+-.|.++++.+.+.|...+..|.-.-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 44444555555566666666666655555555444455555444
No 423
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=60.21 E-value=93 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhh
Q 036775 147 FIALISACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 172 (293)
+..+...+...|..+.|..+++.+.+
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE 182 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLE 182 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHH
Confidence 33344445577777888877777776
No 424
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.43 E-value=76 Score=24.09 Aligned_cols=85 Identities=12% Similarity=0.155 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHHHh----CCCCCcH--hHHHHHHHHHhcCCC-------hhHHHHHHHHhhhhcCCCc---c-hhHHH
Q 036775 122 NGCGRQALQLFSLMII----NGVFPDD--VTFIALISACSHGGL-------VDQGLILFKAMSTVYEIVP---Q-TQHYA 184 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~---~-~~~~~ 184 (293)
...+++|.+.|.-..- .+.+|.. ..+..+...|...|+ +..|.+.|.+..+....+. + ....-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3445555554443321 2233332 233334444555555 3345555555554221111 1 22333
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 036775 185 CVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 185 ~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
.+.....+.|+.++|.++|.++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 4556667778888888888777
No 425
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=58.79 E-value=1e+02 Score=25.33 Aligned_cols=88 Identities=17% Similarity=0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 82 NAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQ-ALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 82 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
-.+.+.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......++++.+.....
T Consensus 170 QGIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 170 QGIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 4456777777777666666665555455556666665555543333 33444444443 7888888888888777666
Q ss_pred hHHHHHHHHhhh
Q 036775 161 DQGLILFKAMST 172 (293)
Q Consensus 161 ~~a~~~~~~~~~ 172 (293)
......+..+.+
T Consensus 247 ~~~~~~i~~~L~ 258 (340)
T PF12069_consen 247 DLVAILIDALLQ 258 (340)
T ss_pred hHHHHHHHHHhc
Confidence 666665555554
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=58.51 E-value=89 Score=24.57 Aligned_cols=26 Identities=15% Similarity=-0.004 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHcCCHHHHHHHHH
Q 036775 77 SNLVGNAVINMYVKCGDVGIAIQVFN 102 (293)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~A~~~~~ 102 (293)
++.....+...|.+.|++.+|+..|-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44455556666666666666655553
No 427
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.92 E-value=7 Score=31.59 Aligned_cols=116 Identities=16% Similarity=0.036 Sum_probs=65.3
Q ss_pred hcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCChhhch
Q 036775 155 SHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRNDEMFD 232 (293)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~a~ 232 (293)
...|.++.|++.|...+. --++....|..-.+++.+.++...|++=+... .+.||.. -|-.--.+-...|+++++.
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 356777777777777775 22344555666666777777777777666555 5555544 3333333445667777777
Q ss_pred HHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 233 PIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
..++...+.+- +..+=..+=...-+.+..++-...+++-+
T Consensus 203 ~dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 203 HDLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHHH
Confidence 77776666552 12222333333444444444444444433
No 428
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=57.75 E-value=18 Score=17.86 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHHccCCCchHHHHH
Q 036775 21 FCEEAVSVFQEMEKTKEAEPNEATLV 46 (293)
Q Consensus 21 ~~~~a~~~~~~m~~~~~~~p~~~~~~ 46 (293)
.++.|..+|+.... +.|++.+|.
T Consensus 2 E~dRAR~IyeR~v~---~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVL---VHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHH---hCCCchHHH
Confidence 35566666666655 446655553
No 429
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=56.62 E-value=30 Score=22.75 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHH--hCCCCCcHhHHHHHHHHHhcC
Q 036775 123 GCGRQALQLFSLMI--INGVFPDDVTFIALISACSHG 157 (293)
Q Consensus 123 ~~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~ 157 (293)
|+++.....+-... ..++.+|...+...+.++...
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~r 97 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHR 97 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 55555544443332 345556666666666555443
No 430
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.40 E-value=1.7e+02 Score=27.11 Aligned_cols=187 Identities=9% Similarity=-0.047 Sum_probs=0.0
Q ss_pred HHHhcccCcchHHHHHHHHHHhhcCCCC---chhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCH
Q 036775 49 LSACSSISALSFGQYVHSYISTRYDLSV---SNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCG 125 (293)
Q Consensus 49 l~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 125 (293)
+.-+.+.+.+++|..+-+.. .|..| ...+....|..+.-.|++++|-...-.|...+..-|.-.+..+...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Q ss_pred HHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 036775 126 RQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIRE 205 (293)
Q Consensus 126 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 205 (293)
.....+ +-......+...|..++..+.. .+...-.++....-. ..-......++.-.-..+...-....++
T Consensus 440 ~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~--~Lys~l~iisa~~~q~~q~Se~~~L~e~--- 510 (846)
T KOG2066|consen 440 TDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPG--HLYSVLTIISATEPQIKQNSESTALLEV--- 510 (846)
T ss_pred chhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCCh--hhhhhhHHHhhcchHHHhhccchhHHHH---
Q ss_pred CCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcC
Q 036775 206 MPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGA 259 (293)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (293)
|+.-|...+++..|...+-.+....-.+..--..|-....++
T Consensus 511 ------------La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~d~i~~~ 552 (846)
T KOG2066|consen 511 ------------LAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLFDQIKDQ 552 (846)
T ss_pred ------------HHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhHHHHHHH
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.44 E-value=64 Score=22.03 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHhhhCCccc-----HHHHHHHHHhcCCHHHHHHHHH
Q 036775 97 AIQVFNMLAYKDMIS-----WSTVISGLAMNGCGRQALQLFS 133 (293)
Q Consensus 97 A~~~~~~~~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~ 133 (293)
..++|..|....+-+ |......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566665554332 4444555556666666666664
No 432
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.24 E-value=1.3e+02 Score=25.34 Aligned_cols=50 Identities=6% Similarity=-0.045 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHh--HHHHHHHHHh--cCCChhHHHHHHHHhh
Q 036775 121 MNGCGRQALQLFSLMIINGVFPDDV--TFIALISACS--HGGLVDQGLILFKAMS 171 (293)
Q Consensus 121 ~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~ 171 (293)
+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455555555555555544 333322 2222223322 3344445555555444
No 433
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.15 E-value=84 Score=23.25 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHhcCCChhHHHHHHHHhhh
Q 036775 153 ACSHGGLVDQGLILFKAMST 172 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~ 172 (293)
.|.+.|.+++|.++++...+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 35555666666665555553
No 434
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.64 E-value=32 Score=22.74 Aligned_cols=27 Identities=0% Similarity=-0.093 Sum_probs=20.0
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHh
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYIST 70 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 70 (293)
-|..++..|...|..++|.+++.....
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777655
No 435
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.60 E-value=1.5e+02 Score=25.91 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHHHhh---hC---------CcccHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCc---
Q 036775 86 NMYVKCGDVGIAIQVFNMLA---YK---------DMISWSTVISGLAMNGCGRQALQLFSLMII-------NGVFPD--- 143 (293)
Q Consensus 86 ~~~~~~~~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~g~~p~--- 143 (293)
..+.-.|++.+|.+++...- ++ ....||.|...+.+.|.+..+..+|....+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34566799999999886543 11 223467777777777777777777766553 465552
Q ss_pred --------HhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775 144 --------DVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192 (293)
Q Consensus 144 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (293)
..+||+-+ .+...|++-.|.+.|..... -+..++..|..|..+|.-
T Consensus 328 tls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 23455544 46688999999999999886 456778889988888764
No 436
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=54.50 E-value=1.1e+02 Score=25.26 Aligned_cols=37 Identities=8% Similarity=0.006 Sum_probs=23.3
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhH
Q 036775 44 TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLV 80 (293)
Q Consensus 44 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (293)
-.-.+++.|.+.|.+++|.++.....+....-|+..+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~l 144 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPL 144 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchh
Confidence 3446777777777888777777776663333344333
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.27 E-value=2e+02 Score=27.32 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCC--c-----ccHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCcHhHHHH--
Q 036775 81 GNAVINMYVKCGDVGIAIQVFNMLAYKD--M-----ISWSTVISGLAMNGCG--RQALQLFSLMIINGVFPDDVTFIA-- 149 (293)
Q Consensus 81 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~-- 149 (293)
|..|+..|...|+.++|++++.+....+ . ..+..+++-+...+.. +-+++.-+...+....-....++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 4567777777777777777777665422 1 1233344444433333 333333333322211111111111
Q ss_pred ----------HHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh
Q 036775 150 ----------LISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR 192 (293)
Q Consensus 150 ----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 192 (293)
.+-.+......+-+..+++.+... .-.++..-.+.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 122344555666677777777752 334455555666666654
No 438
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=53.72 E-value=34 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.013 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
|+++.....+-.+.- |...|...+...+.++...|
T Consensus 62 Ge~~~~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 62 GEYDDIYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CchHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 666666555555444 55667777777666655443
No 439
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.29 E-value=12 Score=31.65 Aligned_cols=95 Identities=7% Similarity=-0.075 Sum_probs=63.4
Q ss_pred HHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHHHHHHhcCChHHHHHHHHhC-CCCchHh-HHHHHHHHHHhcCC
Q 036775 151 ISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVVDMYGRAGLLEEAEAFIREM-PIEAEWS-VWGALLNACRIHRN 227 (293)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~ 227 (293)
...+...+.++.|..++.+.++ ..||...| ..-..++.+.+++..|+.=+... +..|+.. .|..=..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4455677889999999999886 35655443 44447888888888887655554 6566543 34434455667777
Q ss_pred hhhchHHHHHHHhhcCCchhh
Q 036775 228 DEMFDPIRQELVNKKGVSVGT 248 (293)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~ 248 (293)
+.+|...|+......|.++..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHH
Confidence 788888777777666655443
No 440
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.66 E-value=1e+02 Score=23.59 Aligned_cols=110 Identities=11% Similarity=0.128 Sum_probs=55.4
Q ss_pred cCCCCchhHHHHHHHHHHH--cCCHHHHHHHHHHhhhCCc-cc-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHH
Q 036775 72 YDLSVSNLVGNAVINMYVK--CGDVGIAIQVFNMLAYKDM-IS-WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTF 147 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~-~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 147 (293)
.++++.-. .++.++.. .+++++|.+.+- .|+. .+ -..++.++...|+.+.|+.+++.+.-... +....
T Consensus 73 f~ip~~~~---~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~ 144 (226)
T PF13934_consen 73 FGIPPKYI---KFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEAL 144 (226)
T ss_pred hCCCHHHH---HHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHH
Confidence 45554433 34454443 355666666663 3322 12 22467777777777777777776532111 12222
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcC
Q 036775 148 IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAG 194 (293)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 194 (293)
..++.. ...+.+.+|..+-+...+. -....+..++..+....
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHh
Confidence 222333 4556777777766655431 11334555555555433
No 441
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=52.11 E-value=74 Score=21.76 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCchHhHHH-HHHHHHHhcCChhhchHHHHH
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREMPIEAEWSVWG-ALLNACRIHRNDEMFDPIRQE 237 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~ 237 (293)
..+..++.-++.-.|..++|.+++...+.-++-...| -++..|+...+.++...+-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4456677777777888888888888875545444333 366677777666666555443
No 442
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.02 E-value=1.2e+02 Score=24.33 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=48.5
Q ss_pred cccCcchHHHHHHHHHHhhcCC---CCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CcccHHHHHHHHHhcCCHHHH
Q 036775 53 SSISALSFGQYVHSYISTRYDL---SVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-DMISWSTVISGLAMNGCGRQA 128 (293)
Q Consensus 53 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 128 (293)
....-.+.+.+.+......... ..++.....++....+.|+.+.-..+++..... +......++.+++...+.+..
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHH
Confidence 4455566667777776661111 234444455666666666655555555555543 445566777777777777777
Q ss_pred HHHHHHHHhCC
Q 036775 129 LQLFSLMIING 139 (293)
Q Consensus 129 ~~~~~~m~~~g 139 (293)
.++++.....+
T Consensus 221 ~~~l~~~l~~~ 231 (324)
T PF11838_consen 221 KRLLDLLLSND 231 (324)
T ss_dssp HHHHHHHHCTS
T ss_pred HHHHHHHcCCc
Confidence 77777777644
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=51.40 E-value=83 Score=22.11 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 112 WSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 112 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
-..++..+...+++-.|.++++++.+.++..+..|.-..+..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34445555555555555555555555555444444433444444433
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=51.32 E-value=1.3e+02 Score=24.18 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=11.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 036775 115 VISGLAMNGCGRQALQLFSLMI 136 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~ 136 (293)
.++.+...|++..|+++..+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455555555555555544
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=51.19 E-value=1.3e+02 Score=24.36 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=18.8
Q ss_pred HHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 165 ILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
++++.+.+ .++.|.-..+..+--.+.+.=.+.+++.+|+.+
T Consensus 264 EL~~~L~~-~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEE-KEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHh-cCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 34444443 444444444444444444444444555555444
No 446
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=1.5e+02 Score=24.93 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCc------hHh--HHHHHHHHHHhcCChhhchHHHHHHHhhc--CCch-----hh
Q 036775 184 ACVVDMYGRAGLLEEAEAFIREMPIEA------EWS--VWGALLNACRIHRNDEMFDPIRQELVNKK--GVSV-----GT 248 (293)
Q Consensus 184 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~-----~~ 248 (293)
..|...+-..|++++|.+++.+.+++- ... ..---++-|...+++-.|.-+-+++.... .++. .-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 456778888999999999998884221 111 11122455788899999988888888765 3332 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q 036775 249 FALMSNTFAGADRWEDANKIRDEIRRMGL 277 (293)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 277 (293)
|+.++....+.+.+=++.+.++..-..|-
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~ 243 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGN 243 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccc
Confidence 89999999999999999999998876543
No 447
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=50.91 E-value=1e+02 Score=23.07 Aligned_cols=25 Identities=8% Similarity=-0.047 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 182 HYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 182 ~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
..+.++..+...|+++.|.+.|.-+
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lL 67 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLL 67 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3455566666666666666666555
No 448
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.34 E-value=1.5e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh-cCCChhHHHHHHHHhhh
Q 036775 115 VISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS-HGGLVDQGLILFKAMST 172 (293)
Q Consensus 115 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 172 (293)
-|..+.+.|-+..|+++.+-+......-|.......|..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35678889999999999999988776657777777777765 77788877877777653
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.15 E-value=33 Score=31.82 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=19.4
Q ss_pred hcCChHHHHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHH
Q 036775 192 RAGLLEEAEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQEL 238 (293)
Q Consensus 192 ~~g~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 238 (293)
..|+++.|++.-+.+. +..+|..|......+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 3444444444444332 2333444444444444444444444433
No 450
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.93 E-value=1.3e+02 Score=24.05 Aligned_cols=137 Identities=14% Similarity=0.049 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHcc-CCCchHH-HHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHH
Q 036775 19 RGFCEEAVSVFQEMEKTK-EAEPNEA-TLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGI 96 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (293)
..+...|.......++.= ...-+.. +-..++....+.++.....+.+..+.. ...-...+..+...|++..
T Consensus 73 ~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~-------v~~~~~~l~~ll~~~dy~~ 145 (291)
T PF10475_consen 73 QDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT-------VQQTQSRLQELLEEGDYPG 145 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCHHH
Confidence 344555555555554431 0111111 123444556666666666666666654 2223456777789999999
Q ss_pred HHHHHHHhhhC--CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCcHhHHHHHHHHHhcCCChhHHHH
Q 036775 97 AIQVFNMLAYK--DMISWSTVISGLAMNGCGRQALQLFSLMIIN-----GVFPDDVTFIALISACSHGGLVDQGLI 165 (293)
Q Consensus 97 A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~ 165 (293)
|++++.+..+- +...|+.+=..- .++++-....+++.+. -...|+..|..++.+|.-.|+...+.+
T Consensus 146 Al~li~~~~~~l~~l~~~~c~~~L~---~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 146 ALDLIEECQQLLEELKGYSCVRHLS---SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999877653 111222211111 1223322333222221 014688899999999999997766553
No 451
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=49.80 E-value=6 Score=21.99 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHHccCCCchH
Q 036775 20 GFCEEAVSVFQEMEKTKEAEPNE 42 (293)
Q Consensus 20 ~~~~~a~~~~~~m~~~~~~~p~~ 42 (293)
=+++.|+..|..+...|.+||+.
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHh
Confidence 36779999999998888677764
No 452
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.13 E-value=2.2e+02 Score=26.42 Aligned_cols=185 Identities=11% Similarity=0.063 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHhhcCCCCchh---HHHHHHHHHHHcCCHHHHHHHHHHhhh-CCc----------ccHHHHHHHHHhcCC
Q 036775 59 SFGQYVHSYISTRYDLSVSNL---VGNAVINMYVKCGDVGIAIQVFNMLAY-KDM----------ISWSTVISGLAMNGC 124 (293)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~----------~~~~~li~~~~~~~~ 124 (293)
++-...+.+|.+ +--.|++. +...++..|-...+++...++.+.++. ||. ..|.-.++---+-|+
T Consensus 180 ~~l~~~L~~mR~-RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 180 DQLNDYLDKMRT-RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHHHh-hcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 334556777777 44445443 345666677778889999998888774 211 234444444455688
Q ss_pred HHHHHHHHHHHHhC--CCCCcHhH-----HHHHH--HHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCC
Q 036775 125 GRQALQLFSLMIIN--GVFPDDVT-----FIALI--SACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGL 195 (293)
Q Consensus 125 ~~~a~~~~~~m~~~--g~~p~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 195 (293)
-++|+...-.|.+. .+.||... |.-+. +.|...+..+.|...|++.-+ +.|+...--.+...+...|+
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHHHhhh
Confidence 88998888777654 35666543 22211 224455667778888877653 45655322122222222222
Q ss_pred -hHHHHHHH------HhC-CCCchHh---H---HHHHHHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775 196 -LEEAEAFI------REM-PIEAEWS---V---WGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247 (293)
Q Consensus 196 -~~~a~~~~------~~~-~~~~~~~---~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (293)
++...++- ..+ +.+-... . ....+.+-.-.+++.+|.+.-++|.+..||...
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 22222211 111 1111111 1 112344445678888888888888888877543
No 453
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=1.3e+02 Score=23.52 Aligned_cols=119 Identities=7% Similarity=-0.067 Sum_probs=75.7
Q ss_pred HHHHcCCHHHHHHHHHHhhh--CCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHH-HHHhcCCChhH
Q 036775 87 MYVKCGDVGIAIQVFNMLAY--KDMI-SWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALI-SACSHGGLVDQ 162 (293)
Q Consensus 87 ~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~ 162 (293)
.|.....++.|...|-+... |++. =|+.-+.++.+..+++.+..--.+.++ +.||..--..++ .+......++.
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 34455678888888876654 4443 366677788888888888877777665 456654433333 34556778888
Q ss_pred HHHHHHHhhhh---cCCCcchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036775 163 GLILFKAMSTV---YEIVPQTQHYACVVDMYGRAGLLEEAEAFIREMP 207 (293)
Q Consensus 163 a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 207 (293)
|+..+.+.... ..+++.......|..+--..-...+..++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 88888777431 2334444556666666555555666666666654
No 454
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.08 E-value=1.8e+02 Score=25.34 Aligned_cols=97 Identities=7% Similarity=-0.028 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC--Cc---------------ccHHHHHHHHHh
Q 036775 59 SFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK--DM---------------ISWSTVISGLAM 121 (293)
Q Consensus 59 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---------------~~~~~li~~~~~ 121 (293)
+.....++...+..++..+......++.. ..|+...|+..++.+..- +. .....++. ..+
T Consensus 179 ~el~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~~~~~i~~li~-si~ 255 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLIPIEVVRDYIN-AIF 255 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCHHHHHHHHH-HHH
Confidence 33444555544435666666555555442 347888888888765421 00 11122222 245
Q ss_pred cCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 122 NGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 122 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
.++++.|..++.+|...|..|....-..+..++-.-|
T Consensus 256 ~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 256 NGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 6888999999999988888776654444444443333
No 455
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.80 E-value=75 Score=20.84 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036775 10 TTMIGGYAERGFCEEAVSVFQEME 33 (293)
Q Consensus 10 ~~li~~~~~~~~~~~a~~~~~~m~ 33 (293)
..++..|...|+.++|...+.++.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 456677888899999999998863
No 456
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.38 E-value=1.1e+02 Score=22.90 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcc
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTK 36 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~ 36 (293)
.-+.++..|...|+++.|-++|.-+.+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~ 71 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCP 71 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCC
Confidence 34567777788888888888888777653
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.80 E-value=1.6e+02 Score=24.20 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=68.9
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHhhhh---cCCCcchhHHHHHHH-HHHh----cCChHHHHHHHHhCC---CCchH
Q 036775 144 DVTFIALISACSHGGLVDQGLILFKAMSTV---YEIVPQTQHYACVVD-MYGR----AGLLEEAEAFIREMP---IEAEW 212 (293)
Q Consensus 144 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~-~~~~----~g~~~~a~~~~~~~~---~~~~~ 212 (293)
...+......||+-|+.+.|.+.+....++ .|.+.|...+.+-+. .|.. ...+++|..++++-+ .+.-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 456667777889999999998887766542 355666654433222 2222 234566666766663 11122
Q ss_pred hHHHHHHHHHHhcCChhhchHHHHHHHhhc-CCchhhHHH-----HHHHHhcCCCHHHHHHHHH
Q 036775 213 SVWGALLNACRIHRNDEMFDPIRQELVNKK-GVSVGTFAL-----MSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 213 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~-----li~~~~~~g~~~~a~~~~~ 270 (293)
.+|..+- |...+++.+|-.+|-...... .-...+|.. .+.+.....+.+-=.++.+
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~dlktKVi~ 245 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVDLKTKVIK 245 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccchHHhhhcC
Confidence 2333322 455667777777776655544 222333333 3444555556555555544
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=47.75 E-value=1.9e+02 Score=25.26 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=127.4
Q ss_pred CcchHHHHHHHHHHHHcC------CHHHHHHHHHHHHHccCCCch-HHHHHHHHHHhcccCcchH-HHHHHHHHHhhcCC
Q 036775 3 KRDVVSWTTMIGGYAERG------FCEEAVSVFQEMEKTKEAEPN-EATLVNVLSACSSISALSF-GQYVHSYISTRYDL 74 (293)
Q Consensus 3 ~p~~~~y~~li~~~~~~~------~~~~a~~~~~~m~~~~~~~p~-~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~ 74 (293)
-|+...|+..|..|...- .....+.+|+.....+...++ ...|..+...+...+...+ |..+.. .++
T Consensus 312 l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~-----e~f 386 (568)
T KOG2396|consen 312 LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTT-----ELF 386 (568)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhH-----HHh
Confidence 467788888888776542 455666777776665545555 4456655555554444333 333332 355
Q ss_pred CCchhHHHHHHHHHHHc-CCHHHH-HHHHHHhhh----CCcccHHHHHHHHHhcCC-HHH-HHH-HHHHHHhCCCCCcHh
Q 036775 75 SVSNLVGNAVINMYVKC-GDVGIA-IQVFNMLAY----KDMISWSTVISGLAMNGC-GRQ-ALQ-LFSLMIINGVFPDDV 145 (293)
Q Consensus 75 ~~~~~~~~~l~~~~~~~-~~~~~A-~~~~~~~~~----~~~~~~~~li~~~~~~~~-~~~-a~~-~~~~m~~~g~~p~~~ 145 (293)
..+...|..-+...... .+++-- .++|..... +....|+... .|+ ++. .+. ++...... ..|+..
T Consensus 387 ~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~ 460 (568)
T KOG2396|consen 387 RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSV 460 (568)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCcee
Confidence 56666665545444422 122211 122222221 2333444443 222 211 112 22222222 345555
Q ss_pred HH-HHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHh--cCChHHHHHHHHhC--CCCchHhHHHHHHH
Q 036775 146 TF-IALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGR--AGLLEEAEAFIREM--PIEAEWSVWGALLN 220 (293)
Q Consensus 146 ~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~--~~~~~~~~~~~l~~ 220 (293)
|+ +.++..+-+.|-..+|...+..+.. -.+|+...|..++..=.. .-++.-+..+++.+ ....|+..|.-.+.
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMK 538 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 54 4566677788889999999998886 345666777777754322 23377778888877 22256666777776
Q ss_pred HHHhcCChhhchHHHHHHHhhc
Q 036775 221 ACRIHRNDEMFDPIRQELVNKK 242 (293)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~ 242 (293)
--..+|..+.+-.++.+..+.-
T Consensus 539 ~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred hhccCCCcccccHHHHHHHHhh
Confidence 6678899998888887666543
No 459
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.69 E-value=1.4e+02 Score=23.48 Aligned_cols=54 Identities=9% Similarity=-0.044 Sum_probs=29.7
Q ss_pred cCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775 156 HGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 211 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~ 211 (293)
..|++-++++.-.+... ..+.|...|..-.++.+..-+..+|..=|... ...|.
T Consensus 242 ~~~e~yevleh~seiL~--~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILR--HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44555555555555553 33445556666666666666666666655554 44443
No 460
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.67 E-value=70 Score=20.99 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 83 AVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 83 ~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
.++.-|...|+.++|...+.++..|
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC
Confidence 3444455555555555555554333
No 461
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.47 E-value=60 Score=21.13 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=27.7
Q ss_pred hHHHHHHHhhc-CCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCcc
Q 036775 232 DPIRQELVNKK-GVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKKTGC 283 (293)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 283 (293)
++.++++...+ +..+.....|.-.|++.|+.+.|.+-|+.= ..+-|....
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE--KalFPES~~ 107 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE--KALFPESGV 107 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh--hhhCccchh
Confidence 34444444433 444455566666777777777777777652 224444443
No 462
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=47.38 E-value=1.4e+02 Score=24.38 Aligned_cols=64 Identities=19% Similarity=0.063 Sum_probs=35.5
Q ss_pred HcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHH
Q 036775 90 KCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISAC 154 (293)
Q Consensus 90 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 154 (293)
+..++-...++++.+.+.|...-..++++.. .|+.+..-..++.+++.|+.++......+...+
T Consensus 288 K~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l 351 (354)
T TIGR01914 288 KARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEIL 351 (354)
T ss_pred hhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 3334444555555555555555555555543 345555556666666666666666655555543
No 463
>PRK09857 putative transposase; Provisional
Probab=47.27 E-value=1.5e+02 Score=23.85 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=42.1
Q ss_pred HHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC
Q 036775 217 ALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMGLKKK 280 (293)
Q Consensus 217 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 280 (293)
.++.-....++.+....+++.+.+..+.......++..-+.+.|.-+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334556666667777666655444444455666777777777888888899988888755
No 464
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.83 E-value=1.8e+02 Score=24.66 Aligned_cols=160 Identities=10% Similarity=-0.023 Sum_probs=86.3
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhh--------cCCCcc
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGV--FPDDVTFIALISACSHGGLVDQGLILFKAMSTV--------YEIVPQ 179 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~ 179 (293)
..+.-+...|...|+++.|++.|.+.++.-- +-....|..+|..-.-.|+|.....+..+..+. ..+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3566788889999999999999999665311 112345666666666778888777777666541 112333
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCchHhHHHHHHHHHHhcCChhhchHHHHHHHhh--cCCchhh
Q 036775 180 TQHYACVVDMYGRAGLLEEAEAFIREMP---------IEAEWSVWGALLNACRIHRNDEMFDPIRQELVNK--KGVSVGT 248 (293)
Q Consensus 180 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 248 (293)
...+..+..... +++..|...|-... +.|...+....+.+.+.-++-+.-..+.....-. ....|..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 344444444433 47777776665541 3344444444555544444433332222111111 0223344
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 249 FALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 249 ~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
...+..-| .+++....+++++++
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k 331 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIK 331 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhc
Confidence 44443333 235666666666653
No 465
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.44 E-value=4e+02 Score=28.59 Aligned_cols=146 Identities=10% Similarity=-0.018 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 036775 114 TVISGLAMNGCGRQALQLFSLM----IINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDM 189 (293)
Q Consensus 114 ~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (293)
.+..+-.+.+.+.+|...+++- ++. .....-|..+...|...+++|....+...-.. .|+. + .-|-.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a----~~sl--~-~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA----DPSL--Y-QQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc----CccH--H-HHHHH
Confidence 4555667778888888888772 221 11234455555577777777777776654211 1222 2 23445
Q ss_pred HHhcCChHHHHHHHHhC-CCCch-HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHH-HHHHhcCCCHHHHH
Q 036775 190 YGRAGLLEEAEAFIREM-PIEAE-WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALM-SNTFAGADRWEDAN 266 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~ 266 (293)
....|++..|...|+.+ +..|+ ...++.++......|.++......+-.....++....++++ +.+--+.++++...
T Consensus 1459 ~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 56678888888888887 44555 44566666655555555555544433333333222222222 33334555555544
Q ss_pred HH
Q 036775 267 KI 268 (293)
Q Consensus 267 ~~ 268 (293)
+.
T Consensus 1539 ~~ 1540 (2382)
T KOG0890|consen 1539 SY 1540 (2382)
T ss_pred hh
Confidence 44
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.39 E-value=2.5e+02 Score=26.15 Aligned_cols=172 Identities=14% Similarity=0.082 Sum_probs=95.1
Q ss_pred HHHHHHhhhC----C---cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHh----------HHHHHHHHHhcCCCh
Q 036775 98 IQVFNMLAYK----D---MISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDV----------TFIALISACSHGGLV 160 (293)
Q Consensus 98 ~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------~~~~ll~~~~~~~~~ 160 (293)
...+.+|+.+ + ..+-..++-.|-...+++...++.+.++.. ||.. .|.-.++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3455666643 3 334556667777788999999999998864 3321 233333333466888
Q ss_pred hHHHHHHHHhhhhc-CCCcchhH-----HHHH--HHHHHhcCChHHHHHHHHhC-CCCchHh---HHHHHHHHHHhcCCh
Q 036775 161 DQGLILFKAMSTVY-EIVPQTQH-----YACV--VDMYGRAGLLEEAEAFIREM-PIEAEWS---VWGALLNACRIHRND 228 (293)
Q Consensus 161 ~~a~~~~~~~~~~~-~~~~~~~~-----~~~l--~~~~~~~g~~~~a~~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~ 228 (293)
++|+...-.+.+.. .+.||... |--+ -..|...+..+.|..+|++. .+.|+.. .+..|+.+..+ .+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~--~F 337 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGE--HF 337 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhh--hc
Confidence 88888877776533 35666532 2211 12345567788899999988 6677654 34455544322 22
Q ss_pred hhchHHHHHHH-------hhcCC-chhh---HHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036775 229 EMFDPIRQELV-------NKKGV-SVGT---FALMSNTFAGADRWEDANKIRDEIRR 274 (293)
Q Consensus 229 ~~a~~~~~~~~-------~~~~~-~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~ 274 (293)
+...++-+-.. +++.. +..- ....+.+-.-++++.+|.+.-+.|-+
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc
Confidence 22222211111 11110 1111 12233444456788888888777755
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.33 E-value=41 Score=29.94 Aligned_cols=92 Identities=11% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 036775 8 SWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINM 87 (293)
Q Consensus 8 ~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 87 (293)
.|-.-+..+...++.. ....+.+...- ...+.....-++..|.+.|-.+.+..+.+.+-. .-. ...-|...+..
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~-p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~-~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRV-PLDTNDDAEKLLEICAELGLEDVAREICKILGQ-RLL--KEGRYGEALSW 447 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG-----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhC-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHH--HCCCHHHHHHH
Confidence 3555555555444332 45555555543 233445567788888888888888888887766 222 23456777888
Q ss_pred HHHcCCHHHHHHHHHHhh
Q 036775 88 YVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 88 ~~~~~~~~~A~~~~~~~~ 105 (293)
+.++|+......+-+.+.
T Consensus 448 ~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HH----------------
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 888888877766655544
No 468
>PRK12798 chemotaxis protein; Reviewed
Probab=46.25 E-value=1.9e+02 Score=24.64 Aligned_cols=220 Identities=13% Similarity=0.064 Sum_probs=131.0
Q ss_pred hcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHH--HcCCHHHHHHHHHHhhhC----CcccHHHHHHH-HHhcCC
Q 036775 52 CSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYV--KCGDVGIAIQVFNMLAYK----DMISWSTVISG-LAMNGC 124 (293)
Q Consensus 52 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~----~~~~~~~li~~-~~~~~~ 124 (293)
....|+......++.. +..++.. ..|+.+.. -.|+-++|.+.+..+... ....|-.|+.+ .....+
T Consensus 91 ~lSGGnP~vlr~L~~~-----d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~d 163 (421)
T PRK12798 91 LLSGGNPATLRKLLAR-----DKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATD 163 (421)
T ss_pred HhcCCCHHHHHHHHHc-----CCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccC
Confidence 3445566555544443 3333332 33443332 358999999999888643 44567777765 445678
Q ss_pred HHHHHHHHHHHHhC--CCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHH-HHHHHHHH---hcCChHH
Q 036775 125 GRQALQLFSLMIIN--GVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHY-ACVVDMYG---RAGLLEE 198 (293)
Q Consensus 125 ~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~---~~g~~~~ 198 (293)
+.+|+++|++..-. |--..+....--+....+.|+.+++..+-.+..+.+...|=..-| ..+...+. .....+.
T Consensus 164 P~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~ 243 (421)
T PRK12798 164 PATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR 243 (421)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH
Confidence 99999999987643 212233445555556778899998887777666534333322212 22222333 3344566
Q ss_pred HHHHHHhCCCCchHhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCc------hhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 036775 199 AEAFIREMPIEAEWSVWGALLNACRIHRNDEMFDPIRQELVNKKGVS------VGTFALMSNTFAGADRWEDANKIRDEI 272 (293)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m 272 (293)
-..++..|.-.--...|..+.+.-...|+.+.|...-++.......+ ...|.... -.-..+++++.+.+..+
T Consensus 244 l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa--~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 244 LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAA--LVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH--ccCcccHHHHHHHHhcC
Confidence 66777777433345578888888999999999988888777654211 11233222 22345577777777766
Q ss_pred HHcCCCCC
Q 036775 273 RRMGLKKK 280 (293)
Q Consensus 273 ~~~~~~p~ 280 (293)
-...+.|.
T Consensus 322 ~~~~L~~~ 329 (421)
T PRK12798 322 DRDKLSER 329 (421)
T ss_pred ChhhCChh
Confidence 55555544
No 469
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.01 E-value=62 Score=19.09 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcc
Q 036775 4 RDVVSWTTMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSS 54 (293)
Q Consensus 4 p~~~~y~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~ 54 (293)
|+...++.++..+++..-.+.++..+.+..+.|. -+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 5667788888888888888888888888888873 344555555555443
No 470
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.92 E-value=53 Score=21.73 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=24.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccCcc
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSISAL 58 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~~~ 58 (293)
++..+...+..-.|.++++.+.+.+ ...+..|..-.|..+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~-~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKG-PSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhCCCE
Confidence 4444444555556666666666554 445555555555555555433
No 471
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.61 E-value=2.5e+02 Score=25.96 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhhhhcCCCc
Q 036775 147 FIALISACSHGGLVDQGLILFKAMSTVYEIVP 178 (293)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 178 (293)
...++.++.+ ++...++.+++++.. .|+.+
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~-~G~d~ 278 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAA-CAVGF 278 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHH-hCCCH
Confidence 3444444333 555566666666654 44443
No 472
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.52 E-value=89 Score=20.75 Aligned_cols=76 Identities=16% Similarity=0.260 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCChhHHHHHHHHhhhhcCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 036775 123 GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLVDQGLILFKAMSTVYEIVPQTQHYACVVDMYGRAGLLEEAEAF 202 (293)
Q Consensus 123 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 202 (293)
...++|..+.+.+...+.. ....-.+-+..+.+.|++++| +..-. ....||...|.+| +-.+.|..+++...
T Consensus 20 HcH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A--Ll~~~---~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA--LLLPQ---CHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH--HHHHT---TS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH--HHhcc---cCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 4567788888777776552 333333444556778888888 22221 2345777666555 45577888888888
Q ss_pred HHhC
Q 036775 203 IREM 206 (293)
Q Consensus 203 ~~~~ 206 (293)
+.++
T Consensus 92 l~rl 95 (116)
T PF09477_consen 92 LTRL 95 (116)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 473
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=45.11 E-value=2e+02 Score=24.77 Aligned_cols=63 Identities=10% Similarity=-0.139 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 214 VWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 214 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
-...|+.-|...|+..+|.+..+++--..-....++..++.+.-+.|+-+..+.++++.-+.|
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 356678888889999999888777654443455678889999999988777777777665544
No 474
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.05 E-value=76 Score=19.85 Aligned_cols=11 Identities=36% Similarity=0.223 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 036775 125 GRQALQLFSLM 135 (293)
Q Consensus 125 ~~~a~~~~~~m 135 (293)
.++|.++++.+
T Consensus 46 ~~q~~~LLd~L 56 (84)
T cd08326 46 RDQARQLLIDL 56 (84)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 475
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=44.83 E-value=39 Score=20.48 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 121 MNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 121 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
..++.+.+.+++++..+.|..|.......+.-+..
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35677777777777777666666555554554443
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.53 E-value=63 Score=18.78 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=5.9
Q ss_pred cCCHHHHHHHHHHH
Q 036775 122 NGCGRQALQLFSLM 135 (293)
Q Consensus 122 ~~~~~~a~~~~~~m 135 (293)
.|++-+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 477
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.32 E-value=95 Score=20.75 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=12.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcc
Q 036775 12 MIGGYAERGFCEEAVSVFQEMEKTK 36 (293)
Q Consensus 12 li~~~~~~~~~~~a~~~~~~m~~~~ 36 (293)
+|+.+.+....++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3344444444555555555555554
No 478
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=44.21 E-value=49 Score=20.03 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHH
Q 036775 260 DRWEDANKIRDEIRR 274 (293)
Q Consensus 260 g~~~~a~~~~~~m~~ 274 (293)
|....|.+-|++|..
T Consensus 59 G~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 59 GELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHcC
Confidence 345566666666543
No 479
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.85 E-value=1.9e+02 Score=24.11 Aligned_cols=54 Identities=6% Similarity=-0.097 Sum_probs=30.7
Q ss_pred HHHHHhcCChhhchHHHHHHHhhcCC-chhhHHHHHHHHh-cCCCHHHHHHHHHHH
Q 036775 219 LNACRIHRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFA-GADRWEDANKIRDEI 272 (293)
Q Consensus 219 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~m 272 (293)
+....+.|-+..|.++.+.+...+|. |+.....+|..|+ +.++++--+++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 33355666666666666666666655 5555555555543 455555555555544
No 480
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=43.04 E-value=57 Score=25.14 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=29.0
Q ss_pred HhcCChHHHHHHHHhC-CCCchH-hHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchh
Q 036775 191 GRAGLLEEAEAFIREM-PIEAEW-SVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVG 247 (293)
Q Consensus 191 ~~~g~~~~a~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (293)
.+.++.+.+-+++.+. ...|.. ..|..+-..--+.|+.+.|.+.+++..+..|++..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445555555555554 333332 24555554455555555555555555555555433
No 481
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.04 E-value=2.3e+02 Score=24.80 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=6.4
Q ss_pred cCChHHHHHHHHh
Q 036775 193 AGLLEEAEAFIRE 205 (293)
Q Consensus 193 ~g~~~~a~~~~~~ 205 (293)
.|+...|+.+++.
T Consensus 213 ~Gd~RdAL~lLeq 225 (484)
T PRK14956 213 DGSVRDMLSFMEQ 225 (484)
T ss_pred CChHHHHHHHHHH
Confidence 3555555555543
No 482
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.90 E-value=1.3e+02 Score=22.85 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCC---------hhhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036775 214 VWGALLNACRIHRN---------DEMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRDEIR 273 (293)
Q Consensus 214 ~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 273 (293)
-|..+..+|.++|- .+....+++...+.+ ..-|+.|..+|.--...-+.++..+++..++
T Consensus 165 E~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 165 EYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 35555555555543 234445555555544 3346788888888888888999999887764
No 483
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.47 E-value=49 Score=22.14 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHccCCCchHHHHHHHHHHhcccC
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKTKEAEPNEATLVNVLSACSSIS 56 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ll~~~~~~~ 56 (293)
+++..+...+..-.|.++++.+.+.+ ...+..|..--|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKG-PRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTT-TT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhcc-CCcCHHHHHHHHHHHHHCC
Confidence 44455555555555555555555544 4444444444444444433
No 484
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.28 E-value=2.1e+02 Score=24.09 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=38.8
Q ss_pred HHhcCCChhHHHHHHHHhhhhcCCCcchh--HHHHHHHHHH--hcCChHHHHHHHHhC
Q 036775 153 ACSHGGLVDQGLILFKAMSTVYEIVPQTQ--HYACVVDMYG--RAGLLEEAEAFIREM 206 (293)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~ 206 (293)
.+.+.+++..|.++++.+.+ . ++++.. .+..+..+|. ..-++++|.+.++..
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~-r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~ 195 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLR-R-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKL 195 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHH-h-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44588999999999999997 3 555554 4555555554 367788999999877
No 485
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.24 E-value=2.5e+02 Score=25.08 Aligned_cols=61 Identities=5% Similarity=-0.015 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 41 NEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 41 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
....|..+++.+. .-+.+...++++++.. .+ ...+..++++....|......-+.+.+...
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~----~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE----KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3445555555443 3344555556665532 11 456677777777777776666666666554
No 486
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.07 E-value=2.5e+02 Score=24.85 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC-----------------CcccHHHHHHHHHhcCCHH
Q 036775 64 VHSYISTRYDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK-----------------DMISWSTVISGLAMNGCGR 126 (293)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~~~li~~~~~~~~~~ 126 (293)
.+....+..|++.+......++.. ..|+...|..++++.... +......++.++ ..|+.+
T Consensus 186 ~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~~~d~~ 262 (509)
T PRK14958 186 HCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-AAKAGD 262 (509)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHH
Confidence 333333335666665544444433 357888888888765421 112223344433 347888
Q ss_pred HHHHHHHHHHhCCCCCc
Q 036775 127 QALQLFSLMIINGVFPD 143 (293)
Q Consensus 127 ~a~~~~~~m~~~g~~p~ 143 (293)
.++.++++|...|..|.
T Consensus 263 ~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 263 RLLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHHcCCCHH
Confidence 88888888888887764
No 487
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=42.07 E-value=2.5e+02 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Q 036775 11 TMIGGYAERGFCEEAVSVFQEMEKT 35 (293)
Q Consensus 11 ~li~~~~~~~~~~~a~~~~~~m~~~ 35 (293)
.|+.-|.+.+++++|+.++..|.-.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~ 437 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWN 437 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCcc
Confidence 5777899999999999999998664
No 488
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.01 E-value=1.5e+02 Score=22.26 Aligned_cols=181 Identities=9% Similarity=0.033 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHHHc----CCHHHHHHHHHHHHHccCCCch----HHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCC
Q 036775 4 RDVVSWTTMIGGYAER----GFCEEAVSVFQEMEKTKEAEPN----EATLVNVLSACSSISALSFGQYVHSYISTRYDLS 75 (293)
Q Consensus 4 p~~~~y~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 75 (293)
+|...+|-++..+.+. ++.+.+..+=.+....+ ..++ ......-+..|-+.|++.+.-.+|-.... |..
T Consensus 6 l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~-~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~--gce 82 (233)
T PF14669_consen 6 LDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQ-FKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM--GCE 82 (233)
T ss_pred CCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh--hcC
Confidence 4566677776655544 33444444433433333 3333 22333344457777888777777766655 222
Q ss_pred CchhHHHHHHHHHHHcCCHHHHHHHHHHhhhCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHh
Q 036775 76 VSNLVGNAVINMYVKCGDVGIAIQVFNMLAYKDMISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACS 155 (293)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 155 (293)
.-... .-+.++ -|+.+.++.+++....|.....+-++.-..+++.+.|-- ..-.+++..|.
T Consensus 83 ~~~dl--q~~~~~-------va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yh 143 (233)
T PF14669_consen 83 KFADL--QRFCAC-------VAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYH 143 (233)
T ss_pred CHHHH--HHHHHH-------HHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHH
Confidence 11110 001111 134444444455556677777766666555554443311 12235666777
Q ss_pred cCCChhHHHHHHHHhhhhc-------CC------CcchhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 156 HGGLVDQGLILFKAMSTVY-------EI------VPQTQHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~~-------~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
+..++.++.++++.|.+.. |+ .+.-...|.-...+.+.|.+|.|..++++-
T Consensus 144 k~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 144 KTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 8888888888888876521 11 122345667777888899999999998876
No 489
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.58 E-value=91 Score=19.75 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 036775 74 LSVSNLVGNAVINMYVKCGDVGIAIQVFNMLAYK 107 (293)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 107 (293)
.|.|......+...+...|++++|++.+-.+.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555666677777777777777777666654
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.54 E-value=1.1e+02 Score=20.86 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=30.6
Q ss_pred hhchHHHHHHHhhc--CCchhhHHHHHHHHhcCCCHHHHHHHHH
Q 036775 229 EMFDPIRQELVNKK--GVSVGTFALMSNTFAGADRWEDANKIRD 270 (293)
Q Consensus 229 ~~a~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 270 (293)
+....+|..+...+ ......|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777665 3345567888888888999999988885
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=41.07 E-value=1.4e+02 Score=21.67 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCCCh
Q 036775 110 ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIALISACSHGGLV 160 (293)
Q Consensus 110 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 160 (293)
..-..++..+...++.-.|.++++.+.+.+..++..|.-.-|..+.+.|-+
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 334455555555555566666666666666555655555555555555544
No 492
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.05 E-value=2.3e+02 Score=25.10 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCchH-hHHHH---HHHHHHhcCChhhchHHHHHHHhhc--CCch---h------
Q 036775 183 YACVVDMYGRAGLLEEAEAFIREMPIEAEW-SVWGA---LLNACRIHRNDEMFDPIRQELVNKK--GVSV---G------ 247 (293)
Q Consensus 183 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~------ 247 (293)
...++.-|.+.+++++|..++..|...-.. ..|.. +.....+..-..+.+..++.+.... |..+ .
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 345677888888888888888888433221 22333 3333444443444445555554433 2111 0
Q ss_pred -----hHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 036775 248 -----TFALMSNTFAGADRWEDANKIRDEIRRMG 276 (293)
Q Consensus 248 -----~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 276 (293)
.-......+.+.+++++|..+--.+.+++
T Consensus 491 d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~D 524 (545)
T PF11768_consen 491 DPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRD 524 (545)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchH
Confidence 11234455567788888877665554433
No 493
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.70 E-value=2.5e+02 Score=24.58 Aligned_cols=32 Identities=6% Similarity=-0.141 Sum_probs=16.6
Q ss_pred cCCCCchhHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 036775 72 YDLSVSNLVGNAVINMYVKCGDVGIAIQVFNMLA 105 (293)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 105 (293)
.|+..+......++ -...|+...|+.++++..
T Consensus 196 Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 196 ENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAI 227 (484)
T ss_pred cCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHH
Confidence 45544444333332 223467777777776643
No 494
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.22 E-value=88 Score=21.96 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhCCCCCcHhHHHHHHHHHhcCC
Q 036775 114 TVISGLAMN-GCGRQALQLFSLMIINGVFPDDVTFIALISACSHGG 158 (293)
Q Consensus 114 ~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 158 (293)
.++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 495
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=2.3e+02 Score=23.93 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHcc----CCCchHHHHHHHHHHhcccCcchHHHHHHHHHHhhcCCCCchhHHHHHHHHHHH----
Q 036775 19 RGFCEEAVSVFQEMEKTK----EAEPNEATLVNVLSACSSISALSFGQYVHSYISTRYDLSVSNLVGNAVINMYVK---- 90 (293)
Q Consensus 19 ~~~~~~a~~~~~~m~~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 90 (293)
.++.+.|++-+-...+.- ....+...+..++..|...++|+.-.+...-+.+++|--.-.. ..++.-+..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai--~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAI--QSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHhccC
Confidence 567777776665554431 1445556677788889999888877666555554333211111 112211111
Q ss_pred cCCHHHHHHHHHHhhh---C-----Cc--ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCcHhHHHHH----------
Q 036775 91 CGDVGIAIQVFNMLAY---K-----DM--ISWSTVISGLAMNGCGRQALQLFSLMIINGVFPDDVTFIAL---------- 150 (293)
Q Consensus 91 ~~~~~~A~~~~~~~~~---~-----~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---------- 150 (293)
..+.+.-+.+.+.+.. - .. ..-..|....-..|+.++|..++.+.. +.||.++
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFIL 175 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHH
Confidence 1122333333333321 1 11 122345566777889998888887752 3343332
Q ss_pred --HHHHhcCCChhHHHHHHHHhhhhcCCCcch-----hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036775 151 --ISACSHGGLVDQGLILFKAMSTVYEIVPQT-----QHYACVVDMYGRAGLLEEAEAFIREM 206 (293)
Q Consensus 151 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~ 206 (293)
++.|...+++-.|.-+-+....+.--.|+. .-|+.++......+.+=.+.+.++..
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 344556677777766666555432223443 34667777777777777777777766
No 496
>COG0819 TenA Putative transcription activator [Transcription]
Probab=39.75 E-value=1.7e+02 Score=22.35 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=34.7
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHH-----------HHHHHccCCCchHHHHHHHHHHhcccC
Q 036775 2 PKRDVVSWTTMIGGYAERGFCEEAVSVF-----------QEMEKTKEAEPNEATLVNVLSACSSIS 56 (293)
Q Consensus 2 p~p~~~~y~~li~~~~~~~~~~~a~~~~-----------~~m~~~~~~~p~~~~~~~ll~~~~~~~ 56 (293)
|.|...+|+..|...+..|++.+.+..+ ..+.+.. ..+....|...+..|+...
T Consensus 105 ~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~-~~~~~~~Y~~Wi~~Y~s~e 169 (218)
T COG0819 105 PSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKP-RASPNPPYQEWIDTYASEE 169 (218)
T ss_pred CCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCcHHHHHHHcCCHH
Confidence 5688899999999999999877654322 2222222 2224556777777776543
No 497
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.02 E-value=2.9e+02 Score=24.77 Aligned_cols=121 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred HhcCCChhHHHHHHHHhhhhcCCCcc------------hhHHHHHHHHHHhcCChHHHHHHHHhC---------------
Q 036775 154 CSHGGLVDQGLILFKAMSTVYEIVPQ------------TQHYACVVDMYGRAGLLEEAEAFIREM--------------- 206 (293)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~--------------- 206 (293)
+.....+++|...|.-... ...|+ ..+...+...+...|+.+.|-+++++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred --------CCCchHhHHHHHHHH---HHhcCChhhchHHHHHHHhhcCC-chhhHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 036775 207 --------PIEAEWSVWGALLNA---CRIHRNDEMFDPIRQELVNKKGV-SVGTFALMSNTFA-GADRWEDANKIRDEIR 273 (293)
Q Consensus 207 --------~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 273 (293)
...-|-..|-++.+- ..+.|-+..|..+.+.+....|. ||.....+|..|+ ++.+++=-++++++..
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred HcC
Q 036775 274 RMG 276 (293)
Q Consensus 274 ~~~ 276 (293)
..+
T Consensus 406 ~~n 408 (665)
T KOG2422|consen 406 NMN 408 (665)
T ss_pred hhc
No 498
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.75 E-value=3.1e+02 Score=25.04 Aligned_cols=85 Identities=15% Similarity=-0.017 Sum_probs=63.2
Q ss_pred HHhcCChHHHHHHHHhC-CCCc-----h--HhHHHHHHHHHHhcCChhhchHHHHHHHhhcCCchhhHHHHHHHHhcCCC
Q 036775 190 YGRAGLLEEAEAFIREM-PIEA-----E--WSVWGALLNACRIHRNDEMFDPIRQELVNKKGVSVGTFALMSNTFAGADR 261 (293)
Q Consensus 190 ~~~~g~~~~a~~~~~~~-~~~~-----~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 261 (293)
..+..++..+.++|+.- ..-| + ......+-.+|....+.+.|.+++++..+.+|.++.+--.+..+....|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 34567777888877654 1111 1 22344555568888999999999999999988888888888888889999
Q ss_pred HHHHHHHHHHHHH
Q 036775 262 WEDANKIRDEIRR 274 (293)
Q Consensus 262 ~~~a~~~~~~m~~ 274 (293)
-++|..+......
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 9999988876654
No 499
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=38.50 E-value=1e+02 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHhC
Q 036775 193 AGLLEEAEAFIREM 206 (293)
Q Consensus 193 ~g~~~~a~~~~~~~ 206 (293)
.|++.+|.+.+-.+
T Consensus 508 ~~~~~~Aa~~Lv~L 521 (566)
T PF07575_consen 508 EGDFREAASLLVSL 521 (566)
T ss_dssp --------------
T ss_pred hhhHHHHHHHHHHH
Confidence 46676766555444
No 500
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.37 E-value=1.4e+02 Score=20.93 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCcHhHHHHHHHHHhcCCC---hhHHHHHHHHhhhhcCCCcc--hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCch
Q 036775 141 FPDDVTFIALISACSHGGL---VDQGLILFKAMSTVYEIVPQ--TQHYACVVDMYGRAGLLEEAEAFIREM-PIEAE 211 (293)
Q Consensus 141 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~ 211 (293)
.++..+--.+..++.++.+ ..+.+.+++.+.+ .. +|+ ......|.-++.+.++++++.++.+.+ ..+||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 4455555566666666654 4556777777774 12 232 233334566788888888888887776 44444
Done!